Query psy15215
Match_columns 1432
No_of_seqs 837 out of 5615
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 23:39:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyd_F RNA polymerase sigma fa 100.0 3E-103 1E-107 992.2 15.1 583 39-628 5-602 (613)
2 3iyd_F RNA polymerase sigma fa 100.0 3E-103 1E-107 991.5 15.1 594 829-1429 5-613 (613)
3 1sig_A Sigma70, RNA polymerase 100.0 1.1E-56 3.7E-61 530.7 33.4 329 144-474 1-339 (339)
4 1sig_A Sigma70, RNA polymerase 100.0 1.6E-56 5.5E-61 529.3 33.2 329 934-1264 1-339 (339)
5 2a6h_F RNA polymerase sigma fa 100.0 7.5E-56 2.6E-60 533.7 33.9 413 830-1428 4-423 (423)
6 2a6h_F RNA polymerase sigma fa 100.0 1.6E-54 5.5E-59 522.1 38.0 404 40-629 4-414 (423)
7 1l9z_H Sigma factor SIGA; heli 100.0 1.8E-47 6E-52 456.0 38.0 251 1174-1428 185-438 (438)
8 1l9z_H Sigma factor SIGA; heli 100.0 1.9E-44 6.6E-49 429.9 38.7 242 384-629 185-429 (438)
9 4edg_A DNA primase; catalytic 100.0 2.5E-39 8.6E-44 372.6 14.4 193 616-811 3-252 (329)
10 3ugo_A RNA polymerase sigma fa 100.0 2.5E-38 8.4E-43 353.6 15.6 239 917-1323 4-245 (245)
11 3ugo_A RNA polymerase sigma fa 100.0 3.5E-38 1.2E-42 352.3 15.4 240 127-533 4-245 (245)
12 1dd9_A DNA primase, DNAG; topr 100.0 4.1E-37 1.4E-41 357.1 14.8 195 617-811 17-266 (338)
13 2au3_A DNA primase; zinc ribbo 100.0 2.9E-33 1E-37 336.9 14.8 197 621-821 105-359 (407)
14 1rp3_A RNA polymerase sigma fa 99.9 3E-27 1E-31 265.6 16.0 219 1191-1419 13-236 (239)
15 1l0o_C Sigma factor; bergerat 99.9 9.9E-28 3.4E-32 269.9 6.2 237 1164-1415 5-243 (243)
16 1rp3_A RNA polymerase sigma fa 99.9 2.9E-26 9.8E-31 257.5 17.6 220 401-630 13-237 (239)
17 1l0o_C Sigma factor; bergerat 99.9 7.4E-27 2.5E-31 262.8 6.7 238 373-625 4-243 (243)
18 2q1z_A RPOE, ECF SIGE; ECF sig 99.8 3.6E-20 1.2E-24 199.2 8.7 170 1173-1417 12-182 (184)
19 1or7_A Sigma-24, RNA polymeras 99.8 1.4E-19 4.8E-24 196.3 12.2 179 1174-1418 10-188 (194)
20 1nui_A DNA primase/helicase; z 99.8 6.8E-20 2.3E-24 207.4 7.8 145 638-811 73-253 (255)
21 1or7_A Sigma-24, RNA polymeras 99.8 8.6E-19 2.9E-23 190.1 15.4 183 384-632 10-192 (194)
22 2q1z_A RPOE, ECF SIGE; ECF sig 99.8 2.3E-19 7.9E-24 192.9 10.5 171 383-628 12-183 (184)
23 3mzy_A RNA polymerase sigma-H 99.7 3.7E-18 1.3E-22 179.4 12.8 154 1214-1421 1-159 (164)
24 1q57_A DNA primase/helicase; d 99.7 4.6E-19 1.6E-23 220.9 6.1 141 639-811 11-190 (503)
25 3mzy_A RNA polymerase sigma-H 99.7 2.4E-17 8.3E-22 173.1 14.3 153 424-630 1-158 (164)
26 2lfw_A PHYR sigma-like domain; 99.6 2.1E-16 7E-21 165.3 -0.2 143 1191-1421 2-144 (157)
27 2lfw_A PHYR sigma-like domain; 99.5 8.1E-16 2.8E-20 160.8 -5.2 140 401-628 2-141 (157)
28 3n0r_A Response regulator; sig 99.4 5.7E-14 1.9E-18 161.6 6.0 144 1183-1419 17-160 (286)
29 3t72_q RNA polymerase sigma fa 99.3 3.3E-12 1.1E-16 120.9 9.8 81 1349-1429 2-82 (99)
30 3n0r_A Response regulator; sig 99.3 7.8E-13 2.7E-17 152.1 6.2 141 393-626 17-157 (286)
31 2k6x_A Sigma-A, RNA polymerase 99.2 9.8E-12 3.3E-16 110.5 5.9 59 39-97 7-67 (72)
32 1tty_A Sigma-A, RNA polymerase 99.0 5.5E-10 1.9E-14 103.9 8.8 72 1358-1429 10-81 (87)
33 2p7v_B Sigma-70, RNA polymeras 99.0 4.6E-10 1.6E-14 99.2 6.6 66 1363-1428 2-67 (68)
34 3hug_A RNA polymerase sigma fa 99.0 1.3E-09 4.3E-14 102.6 10.0 74 1344-1421 15-88 (92)
35 1ku3_A Sigma factor SIGA; heli 99.0 2.3E-10 7.8E-15 102.8 4.5 69 1360-1428 4-73 (73)
36 3t72_q RNA polymerase sigma fa 99.0 1.6E-09 5.6E-14 102.5 9.8 72 559-630 2-73 (99)
37 3hug_A RNA polymerase sigma fa 98.9 9.8E-09 3.3E-13 96.5 10.9 73 554-630 15-87 (92)
38 2o7g_A Probable RNA polymerase 98.8 5.5E-09 1.9E-13 102.1 7.3 87 1173-1265 10-96 (112)
39 2o7g_A Probable RNA polymerase 98.8 9.9E-09 3.4E-13 100.3 7.5 87 383-475 10-96 (112)
40 2k6x_A Sigma-A, RNA polymerase 98.7 7.9E-09 2.7E-13 91.8 5.7 59 829-887 7-67 (72)
41 1h3l_A RNA polymerase sigma fa 98.7 8.5E-09 2.9E-13 95.8 4.7 80 1180-1264 5-84 (87)
42 2o8x_A Probable RNA polymerase 98.6 4.3E-08 1.5E-12 86.9 7.5 64 1355-1422 4-67 (70)
43 1h3l_A RNA polymerase sigma fa 98.6 1.8E-08 6.3E-13 93.5 4.8 80 390-474 5-84 (87)
44 3clo_A Transcriptional regulat 98.6 1.1E-10 3.6E-15 132.3 -13.6 162 1175-1424 85-250 (258)
45 1tty_A Sigma-A, RNA polymerase 98.5 1.1E-07 3.8E-12 88.3 7.4 61 568-628 10-70 (87)
46 1t6t_1 Putative protein; struc 98.5 1.1E-07 3.6E-12 91.8 6.0 62 718-779 7-90 (118)
47 1ku3_A Sigma factor SIGA; heli 98.5 5.9E-08 2E-12 86.9 3.9 59 570-628 4-63 (73)
48 1xsv_A Hypothetical UPF0122 pr 98.4 5E-07 1.7E-11 88.0 9.3 68 1351-1422 9-77 (113)
49 2p7v_B Sigma-70, RNA polymeras 98.4 1.9E-07 6.6E-12 82.3 4.9 56 573-628 2-57 (68)
50 2o8x_A Probable RNA polymerase 98.4 3.8E-07 1.3E-11 80.7 6.3 61 565-629 4-64 (70)
51 1xsv_A Hypothetical UPF0122 pr 98.3 2.3E-06 8E-11 83.3 9.9 67 561-631 9-76 (113)
52 1s7o_A Hypothetical UPF0122 pr 98.3 1.4E-06 4.8E-11 84.7 8.1 62 1357-1422 12-74 (113)
53 2rnj_A Response regulator prot 98.3 5E-07 1.7E-11 84.6 4.4 67 1353-1424 16-82 (91)
54 3clo_A Transcriptional regulat 98.2 1.6E-09 5.3E-14 122.7 -15.6 155 385-627 85-243 (258)
55 1x3u_A Transcriptional regulat 98.2 2E-06 6.9E-11 78.0 7.3 64 1358-1426 8-71 (79)
56 3c57_A Two component transcrip 98.2 1.6E-06 5.5E-11 81.8 6.5 65 1355-1424 16-80 (95)
57 1je8_A Nitrate/nitrite respons 98.2 2.1E-06 7.3E-11 78.5 6.3 60 1360-1424 15-74 (82)
58 1jhg_A Trp operon repressor; c 98.1 3.3E-06 1.1E-10 79.1 6.4 76 561-637 19-98 (101)
59 1s7o_A Hypothetical UPF0122 pr 98.1 7.9E-06 2.7E-10 79.4 9.1 60 567-630 12-72 (113)
60 1jhg_A Trp operon repressor; c 98.1 3.6E-06 1.2E-10 78.8 5.7 68 1351-1419 19-90 (101)
61 1fse_A GERE; helix-turn-helix 97.9 1.2E-05 4.2E-10 71.7 6.8 62 1360-1426 5-66 (74)
62 2rnj_A Response regulator prot 97.9 6E-06 2.1E-10 77.2 3.3 59 563-626 16-74 (91)
63 3c57_A Two component transcrip 97.8 2.1E-05 7.1E-10 74.1 5.9 57 565-626 16-72 (95)
64 1x3u_A Transcriptional regulat 97.7 3E-05 1E-09 70.2 5.8 54 568-626 8-61 (79)
65 1je8_A Nitrate/nitrite respons 97.6 3.4E-05 1.2E-09 70.4 4.4 55 569-628 14-68 (82)
66 3ulq_B Transcriptional regulat 97.6 0.00011 3.7E-09 68.3 7.5 58 1362-1424 25-82 (90)
67 2jpc_A SSRB; DNA binding prote 97.6 8.7E-05 3E-09 63.4 5.8 51 1369-1424 1-51 (61)
68 1p4w_A RCSB; solution structur 97.4 0.00021 7.1E-09 67.6 6.9 56 1364-1424 32-87 (99)
69 1fse_A GERE; helix-turn-helix 97.3 0.00017 5.7E-09 64.2 5.0 53 570-627 5-57 (74)
70 3ulq_B Transcriptional regulat 97.1 0.00044 1.5E-08 64.2 5.6 49 572-625 25-73 (90)
71 2jpc_A SSRB; DNA binding prote 96.8 0.00087 3E-08 57.1 4.4 43 579-626 1-43 (61)
72 1p4w_A RCSB; solution structur 96.8 0.0012 4E-08 62.4 5.7 47 574-625 32-78 (99)
73 2q0o_A Probable transcriptiona 96.4 0.0046 1.6E-07 68.4 7.7 55 1365-1424 174-228 (236)
74 1l3l_A Transcriptional activat 96.3 0.0052 1.8E-07 67.8 7.6 54 1366-1424 173-226 (234)
75 3szt_A QCSR, quorum-sensing co 96.0 0.018 6.2E-07 63.6 10.0 54 1365-1423 174-227 (237)
76 2w7n_A TRFB transcriptional re 96.0 0.014 4.7E-07 54.8 7.2 46 1366-1415 18-63 (101)
77 3qp6_A CVIR transcriptional re 95.8 0.012 4.1E-07 66.2 7.1 52 1366-1422 197-248 (265)
78 1tc3_C Protein (TC3 transposas 95.7 0.012 4.3E-07 47.1 5.1 40 1366-1409 5-44 (51)
79 2q0o_A Probable transcriptiona 95.4 0.015 5.2E-07 64.1 6.1 45 576-625 175-219 (236)
80 1l3l_A Transcriptional activat 95.3 0.015 5.2E-07 64.0 6.0 45 576-625 173-217 (234)
81 2x48_A CAG38821; archeal virus 95.0 0.011 3.7E-07 49.1 2.6 40 1366-1410 16-55 (55)
82 3szt_A QCSR, quorum-sensing co 94.7 0.051 1.8E-06 59.9 8.0 46 575-625 174-219 (237)
83 2fcj_A Small toprim domain pro 94.4 0.055 1.9E-06 52.3 6.2 58 729-793 4-85 (119)
84 3qp6_A CVIR transcriptional re 94.2 0.038 1.3E-06 62.1 5.5 46 576-626 197-242 (265)
85 2w7n_A TRFB transcriptional re 94.2 0.11 3.7E-06 48.7 7.6 45 576-624 18-62 (101)
86 1yio_A Response regulatory pro 94.0 0.11 3.9E-06 55.3 8.6 59 1361-1424 137-195 (208)
87 1tc3_C Protein (TC3 transposas 94.0 0.051 1.7E-06 43.4 4.4 39 576-618 5-43 (51)
88 1a04_A Nitrate/nitrite respons 92.8 0.18 6E-06 54.1 7.7 55 1365-1424 153-207 (215)
89 3c3w_A Two component transcrip 91.8 0.21 7.1E-06 54.2 6.7 54 1365-1423 148-201 (225)
90 2x48_A CAG38821; archeal virus 91.8 0.073 2.5E-06 43.9 2.3 38 577-619 17-54 (55)
91 3klo_A Transcriptional regulat 91.3 0.18 6.1E-06 54.6 5.5 56 1364-1424 157-212 (225)
92 1yio_A Response regulatory pro 89.4 0.55 1.9E-05 49.8 7.2 50 571-625 137-186 (208)
93 3p7n_A Sensor histidine kinase 89.3 0.89 3E-05 49.9 9.1 65 1355-1424 187-251 (258)
94 1a04_A Nitrate/nitrite respons 88.0 0.6 2.1E-05 49.8 6.3 46 575-625 153-198 (215)
95 1p2f_A Response regulator; DRR 87.5 0.49 1.7E-05 50.8 5.3 52 1366-1418 145-199 (220)
96 1jko_C HIN recombinase, DNA-in 87.2 0.29 9.8E-06 39.2 2.4 38 1367-1409 6-44 (52)
97 2gwr_A DNA-binding response re 87.0 0.65 2.2E-05 50.6 5.9 52 1365-1417 152-208 (238)
98 1qgp_A Protein (double strande 86.4 0.6 2E-05 41.5 4.2 42 1369-1410 14-55 (77)
99 1qbj_A Protein (double-strande 86.2 0.99 3.4E-05 40.5 5.5 41 1369-1409 10-50 (81)
100 2oqr_A Sensory transduction pr 86.1 0.6 2E-05 50.4 5.0 51 1366-1417 156-211 (230)
101 3c3w_A Two component transcrip 85.9 0.63 2.2E-05 50.3 5.1 46 575-625 148-193 (225)
102 1kgs_A DRRD, DNA binding respo 85.0 0.72 2.5E-05 49.5 5.0 54 1366-1420 151-209 (225)
103 3klo_A Transcriptional regulat 83.7 0.73 2.5E-05 49.7 4.3 47 574-625 157-203 (225)
104 1zx4_A P1 PARB, plasmid partit 83.7 0.82 2.8E-05 48.0 4.4 37 1370-1411 13-49 (192)
105 1ys7_A Transcriptional regulat 82.9 0.79 2.7E-05 49.5 4.2 54 1366-1420 159-217 (233)
106 1p2f_A Response regulator; DRR 82.1 1.4 4.6E-05 47.2 5.6 49 576-625 145-196 (220)
107 3q9s_A DNA-binding response re 81.9 0.99 3.4E-05 49.7 4.5 54 1366-1420 182-240 (249)
108 2oqr_A Sensory transduction pr 80.5 1.6 5.6E-05 46.8 5.6 49 576-625 156-209 (230)
109 2gwr_A DNA-binding response re 80.3 1.8 6.1E-05 47.0 5.9 49 576-625 153-206 (238)
110 3p7n_A Sensor histidine kinase 79.4 3 0.0001 45.6 7.4 56 565-625 187-242 (258)
111 3r0j_A Possible two component 79.3 2.1 7.1E-05 46.9 6.0 50 1366-1416 176-230 (250)
112 1qbj_A Protein (double-strande 78.7 2.8 9.6E-05 37.6 5.5 43 579-625 10-52 (81)
113 1u78_A TC3 transposase, transp 78.6 2 6.9E-05 42.4 5.1 41 1366-1410 6-46 (141)
114 1qgp_A Protein (double strande 78.4 1.8 6.3E-05 38.3 4.2 38 579-616 14-51 (77)
115 1pdn_C Protein (PRD paired); p 78.3 2.7 9.2E-05 40.4 5.9 42 1366-1411 17-58 (128)
116 3k2z_A LEXA repressor; winged 78.3 2 6.7E-05 45.6 5.2 43 1366-1408 2-46 (196)
117 2elh_A CG11849-PA, LD40883P; s 78.1 3.4 0.00012 37.4 6.1 40 1367-1411 23-63 (87)
118 3kor_A Possible Trp repressor; 77.8 1.6 5.6E-05 41.7 3.8 40 1365-1411 60-99 (119)
119 2jt1_A PEFI protein; solution 77.7 3.2 0.00011 36.8 5.5 34 1284-1317 14-48 (77)
120 1jko_C HIN recombinase, DNA-in 77.7 1.9 6.4E-05 34.2 3.8 37 577-618 6-43 (52)
121 1kgs_A DRRD, DNA binding respo 77.6 2.4 8.1E-05 45.3 5.7 49 576-625 151-204 (225)
122 1oyi_A Double-stranded RNA-bin 77.0 2 6.9E-05 38.4 4.0 24 1387-1410 31-54 (82)
123 2hqr_A Putative transcriptiona 76.6 0.71 2.4E-05 49.6 1.1 51 1366-1417 143-198 (223)
124 1k78_A Paired box protein PAX5 74.7 3.7 0.00012 41.1 5.8 43 1366-1412 32-74 (149)
125 2jn6_A Protein CGL2762, transp 74.6 4.6 0.00016 37.2 6.1 41 1366-1410 5-47 (97)
126 1ys7_A Transcriptional regulat 74.6 2.6 9E-05 45.2 5.1 49 576-625 159-212 (233)
127 3q9s_A DNA-binding response re 74.3 2.8 9.6E-05 46.0 5.3 49 576-625 182-235 (249)
128 2o3f_A Putative HTH-type trans 73.4 7.6 0.00026 37.0 7.3 51 1357-1407 9-60 (111)
129 2jt1_A PEFI protein; solution 72.6 5.1 0.00017 35.5 5.4 27 501-527 22-48 (77)
130 2heo_A Z-DNA binding protein 1 71.9 4.2 0.00014 34.9 4.6 40 1367-1408 8-47 (67)
131 2w48_A Sorbitol operon regulat 71.7 3.3 0.00011 47.3 5.3 37 1372-1412 11-47 (315)
132 2glo_A Brinker CG9653-PA; prot 71.2 5.1 0.00018 33.2 4.9 40 1367-1410 6-49 (59)
133 1zx4_A P1 PARB, plasmid partit 70.5 2.8 9.6E-05 44.0 3.8 37 580-621 13-49 (192)
134 2d1h_A ST1889, 109AA long hypo 69.9 6.9 0.00023 36.3 6.2 44 1364-1409 16-59 (109)
135 3sqn_A Conserved domain protei 69.7 4.1 0.00014 49.6 5.7 121 1277-1416 18-138 (485)
136 2k9s_A Arabinose operon regula 69.1 30 0.001 32.1 10.6 39 1279-1317 5-44 (107)
137 2hqr_A Putative transcriptiona 69.0 2.1 7.2E-05 45.8 2.6 49 576-625 143-196 (223)
138 3frw_A Putative Trp repressor 68.7 5.8 0.0002 37.2 5.0 46 1367-1413 37-84 (107)
139 3r0a_A Putative transcriptiona 68.7 7.3 0.00025 37.7 6.2 45 1363-1409 20-65 (123)
140 3nqo_A MARR-family transcripti 67.3 13 0.00044 38.7 8.3 55 1355-1410 27-81 (189)
141 3oio_A Transcriptional regulat 66.8 32 0.0011 32.3 10.3 39 1279-1317 9-47 (113)
142 3r0j_A Possible two component 66.8 6.2 0.00021 43.0 6.0 49 576-625 176-229 (250)
143 3k2z_A LEXA repressor; winged 66.1 4.9 0.00017 42.4 4.8 39 576-614 2-42 (196)
144 3k2a_A Homeobox protein MEIS2; 66.0 14 0.00048 31.6 6.7 56 1366-1421 4-63 (67)
145 3iwf_A Transcription regulator 65.3 11 0.00037 35.7 6.4 53 1356-1408 4-57 (107)
146 2o3f_A Putative HTH-type trans 65.1 13 0.00043 35.4 6.9 51 567-617 9-60 (111)
147 3kor_A Possible Trp repressor; 64.5 4.5 0.00016 38.7 3.5 34 576-615 61-94 (119)
148 2l0k_A Stage III sporulation p 64.1 6.5 0.00022 36.2 4.4 38 1369-1410 7-44 (93)
149 1y0u_A Arsenical resistance op 63.8 25 0.00085 32.0 8.6 37 1368-1409 30-66 (96)
150 2k27_A Paired box protein PAX- 63.6 3.9 0.00013 41.5 3.2 40 1366-1409 25-64 (159)
151 3mn2_A Probable ARAC family tr 63.5 65 0.0022 29.8 11.7 39 1279-1317 4-42 (108)
152 3oou_A LIN2118 protein; protei 62.4 49 0.0017 30.6 10.6 39 1279-1317 7-45 (108)
153 1u78_A TC3 transposase, transp 61.8 6.7 0.00023 38.5 4.5 40 576-619 6-45 (141)
154 2gxg_A 146AA long hypothetical 61.2 20 0.00068 35.0 8.0 50 1358-1411 24-75 (146)
155 3tgn_A ADC operon repressor AD 61.0 11 0.00037 37.1 5.9 41 1366-1410 35-75 (146)
156 2cfx_A HTH-type transcriptiona 60.9 11 0.00038 37.4 6.0 42 1366-1410 2-43 (144)
157 3eco_A MEPR; mutlidrug efflux 60.7 19 0.00063 35.0 7.6 55 1355-1410 15-71 (139)
158 3frw_A Putative Trp repressor 60.5 18 0.00061 33.9 6.6 47 569-615 28-77 (107)
159 2nnn_A Probable transcriptiona 60.4 18 0.00062 35.0 7.5 52 1356-1410 24-76 (140)
160 2qvo_A Uncharacterized protein 60.3 8.1 0.00028 35.3 4.5 45 1366-1410 9-54 (95)
161 1pdn_C Protein (PRD paired); p 60.3 9.4 0.00032 36.5 5.2 40 576-619 17-56 (128)
162 3bro_A Transcriptional regulat 59.7 24 0.00081 34.2 8.2 55 1356-1411 19-75 (141)
163 1jhf_A LEXA repressor; LEXA SO 59.6 6.3 0.00022 41.7 4.1 45 1365-1409 2-49 (202)
164 2cyy_A Putative HTH-type trans 59.5 12 0.0004 37.5 5.9 42 1366-1410 4-45 (151)
165 2dbb_A Putative HTH-type trans 59.3 15 0.0005 36.8 6.6 43 1365-1410 5-47 (151)
166 1uxc_A FRUR (1-57), fructose r 58.7 6.7 0.00023 33.4 3.3 22 1388-1409 2-23 (65)
167 2cg4_A Regulatory protein ASNC 58.4 13 0.00043 37.3 5.9 43 1366-1411 5-47 (152)
168 1ku9_A Hypothetical protein MJ 58.3 18 0.0006 35.5 7.0 50 1358-1409 13-64 (152)
169 3lsg_A Two-component response 58.1 78 0.0027 28.9 11.1 37 1281-1317 6-43 (103)
170 2x4h_A Hypothetical protein SS 57.8 13 0.00044 36.4 5.8 47 1364-1410 8-55 (139)
171 2k9s_A Arabinose operon regula 57.8 58 0.002 30.1 10.2 39 489-527 5-44 (107)
172 1r1u_A CZRA, repressor protein 57.6 23 0.00077 33.0 7.2 46 1360-1409 16-62 (106)
173 2p5v_A Transcriptional regulat 57.6 13 0.00044 37.7 5.9 42 1366-1410 7-48 (162)
174 1q1h_A TFE, transcription fact 57.5 9.1 0.00031 36.0 4.4 40 1367-1408 16-55 (110)
175 2elh_A CG11849-PA, LD40883P; s 57.3 14 0.00048 33.2 5.5 37 577-618 23-60 (87)
176 2w25_A Probable transcriptiona 57.1 14 0.00046 37.0 5.9 42 1366-1410 4-45 (150)
177 3r0a_A Putative transcriptiona 56.8 19 0.00066 34.7 6.7 47 573-625 20-67 (123)
178 1sfx_A Conserved hypothetical 56.4 15 0.00051 33.8 5.7 42 1366-1410 17-58 (109)
179 1oyi_A Double-stranded RNA-bin 56.3 9.6 0.00033 34.1 4.0 22 597-618 31-52 (82)
180 1sfu_A 34L protein; protein/Z- 56.3 18 0.00061 31.7 5.5 39 1357-1409 14-52 (75)
181 1ais_B TFB TFIIB, protein (tra 56.3 1.5E+02 0.0053 30.7 14.4 173 1200-1415 13-194 (200)
182 2rn7_A IS629 ORFA; helix, all 56.1 9.1 0.00031 35.9 4.1 45 1367-1411 7-55 (108)
183 2hin_A GP39, repressor protein 55.8 8.3 0.00028 33.5 3.4 22 1388-1409 12-33 (71)
184 3jth_A Transcription activator 55.5 26 0.00089 31.9 7.2 46 1360-1409 13-59 (98)
185 3iwf_A Transcription regulator 55.1 24 0.00082 33.2 6.8 50 566-615 4-54 (107)
186 3ech_A MEXR, multidrug resista 55.1 20 0.00068 35.0 6.7 53 1356-1411 20-76 (142)
187 1i1g_A Transcriptional regulat 55.0 12 0.00042 36.7 5.1 42 1367-1411 2-43 (141)
188 3i4p_A Transcriptional regulat 54.9 16 0.00053 37.2 6.0 40 1367-1409 1-40 (162)
189 2jn6_A Protein CGL2762, transp 54.5 15 0.0005 33.7 5.2 39 577-619 6-46 (97)
190 4b8x_A SCO5413, possible MARR- 54.5 21 0.00072 35.4 6.8 55 1355-1410 19-75 (147)
191 2e1c_A Putative HTH-type trans 54.3 16 0.00053 37.6 5.9 42 1366-1410 24-65 (171)
192 3bpv_A Transcriptional regulat 54.3 27 0.00091 33.7 7.5 52 1356-1410 14-67 (138)
193 1k78_A Paired box protein PAX5 54.3 13 0.00045 37.0 5.2 40 576-619 32-71 (149)
194 3oio_A Transcriptional regulat 54.0 66 0.0022 30.0 10.0 39 489-527 9-47 (113)
195 1hlv_A CENP-B, major centromer 53.7 14 0.00049 35.7 5.3 45 1366-1413 7-52 (131)
196 1bl0_A Protein (multiple antib 53.5 56 0.0019 31.4 9.6 39 1279-1317 13-51 (129)
197 3bdd_A Regulatory protein MARR 53.2 33 0.0011 33.2 8.0 43 1366-1411 28-70 (142)
198 1k61_A Mating-type protein alp 52.7 38 0.0013 27.9 7.0 52 1366-1417 4-59 (60)
199 1le8_B Mating-type protein alp 52.6 37 0.0013 30.2 7.4 63 1367-1429 9-75 (83)
200 3nqo_A MARR-family transcripti 52.1 27 0.00091 36.3 7.4 50 566-616 28-77 (189)
201 2fu4_A Ferric uptake regulatio 52.1 24 0.00082 31.1 6.1 42 1366-1408 14-60 (83)
202 3pqk_A Biofilm growth-associat 52.1 28 0.00094 32.0 6.8 46 1360-1409 13-59 (102)
203 1zug_A Phage 434 CRO protein; 52.1 13 0.00045 31.3 4.2 23 1387-1409 17-39 (71)
204 2pn6_A ST1022, 150AA long hypo 52.0 18 0.00063 35.9 5.9 41 1367-1410 1-41 (150)
205 2fbh_A Transcriptional regulat 52.0 25 0.00085 34.3 6.9 54 1356-1411 22-77 (146)
206 3f3x_A Transcriptional regulat 52.0 27 0.00093 34.0 7.2 42 1366-1411 34-75 (144)
207 3fm5_A Transcriptional regulat 51.9 78 0.0027 30.9 10.7 65 455-527 14-78 (150)
208 1jgs_A Multiple antibiotic res 51.8 40 0.0014 32.4 8.3 55 1355-1412 18-74 (138)
209 2zkz_A Transcriptional repress 51.6 16 0.00056 33.6 5.1 39 1368-1409 26-64 (99)
210 3qq6_A HTH-type transcriptiona 51.5 14 0.00046 32.4 4.2 30 1376-1409 17-46 (78)
211 3fm5_A Transcriptional regulat 51.4 32 0.0011 33.8 7.7 53 1355-1409 23-77 (150)
212 1r69_A Repressor protein CI; g 51.4 14 0.00047 31.0 4.2 23 1387-1409 15-37 (69)
213 2a6c_A Helix-turn-helix motif; 51.3 14 0.00047 32.8 4.3 22 1388-1409 33-54 (83)
214 3fmy_A HTH-type transcriptiona 50.7 10 0.00034 32.9 3.2 37 1367-1409 11-47 (73)
215 2p5k_A Arginine repressor; DNA 50.6 21 0.00071 29.6 5.1 24 1385-1408 18-46 (64)
216 2r1j_L Repressor protein C2; p 50.4 13 0.00045 31.0 3.9 22 1388-1409 20-41 (68)
217 2d1h_A ST1889, 109AA long hypo 50.4 24 0.0008 32.5 6.1 45 574-624 16-60 (109)
218 2xi8_A Putative transcription 50.2 13 0.00046 30.7 3.9 23 1387-1409 15-37 (66)
219 2ia0_A Putative HTH-type trans 50.1 20 0.00068 36.8 5.9 43 1364-1409 12-54 (171)
220 2cw1_A SN4M; lambda CRO fold, 50.0 9.9 0.00034 32.4 2.9 21 1388-1408 15-35 (65)
221 2dk5_A DNA-directed RNA polyme 50.0 11 0.00036 34.6 3.3 45 1364-1409 15-59 (91)
222 3f6w_A XRE-family like protein 49.9 13 0.00044 32.7 3.9 29 1377-1409 22-50 (83)
223 2k9q_A Uncharacterized protein 49.9 13 0.00045 32.2 3.9 22 1388-1409 17-38 (77)
224 4ghj_A Probable transcriptiona 49.7 14 0.00048 34.5 4.2 30 1375-1408 42-71 (101)
225 2oqg_A Possible transcriptiona 49.7 27 0.00091 32.7 6.4 45 1362-1410 13-58 (114)
226 1y7y_A C.AHDI; helix-turn-heli 49.5 15 0.00052 31.2 4.2 23 1387-1409 27-49 (74)
227 3sqn_A Conserved domain protei 49.4 16 0.00054 44.4 5.8 115 491-628 22-136 (485)
228 3b7h_A Prophage LP1 protein 11 49.4 17 0.00059 31.3 4.6 29 1377-1409 15-43 (78)
229 3vdp_A Recombination protein R 49.3 25 0.00085 37.1 6.4 52 728-779 92-178 (212)
230 3nrv_A Putative transcriptiona 49.1 22 0.00075 34.9 5.9 52 1357-1411 25-79 (148)
231 3cuo_A Uncharacterized HTH-typ 49.0 18 0.00061 32.9 4.9 39 1368-1409 23-61 (99)
232 3oou_A LIN2118 protein; protei 49.0 1E+02 0.0036 28.3 10.4 39 489-527 7-45 (108)
233 2b5a_A C.BCLI; helix-turn-heli 49.0 16 0.00053 31.5 4.2 23 1387-1409 24-46 (77)
234 3o9x_A Uncharacterized HTH-typ 49.0 30 0.001 33.5 6.8 39 1365-1409 69-107 (133)
235 3bj6_A Transcriptional regulat 49.0 29 0.00099 34.1 6.9 52 1357-1411 26-79 (152)
236 3eus_A DNA-binding protein; st 48.8 15 0.00053 32.7 4.3 29 1377-1409 22-50 (86)
237 2lkp_A Transcriptional regulat 48.7 38 0.0013 32.0 7.4 40 1367-1410 30-69 (119)
238 1uly_A Hypothetical protein PH 48.2 24 0.00081 37.1 6.2 40 1367-1410 18-57 (192)
239 2wiu_B HTH-type transcriptiona 48.0 19 0.00065 31.9 4.8 22 1388-1409 27-48 (88)
240 3cdh_A Transcriptional regulat 47.9 41 0.0014 33.2 7.8 52 1356-1410 28-81 (155)
241 2glo_A Brinker CG9653-PA; prot 47.8 18 0.00062 29.8 4.2 44 577-625 6-53 (59)
242 1p6r_A Penicillinase repressor 47.7 19 0.00064 31.8 4.6 43 1365-1410 5-51 (82)
243 3t76_A VANU, transcriptional r 47.6 17 0.00057 33.0 4.2 22 1388-1409 39-60 (88)
244 2htj_A P fimbrial regulatory p 47.5 25 0.00084 31.0 5.3 24 1386-1409 14-37 (81)
245 1vdd_A Recombination protein R 47.5 32 0.0011 36.6 6.8 53 727-779 77-162 (228)
246 1ais_B TFB TFIIB, protein (tra 47.3 2.1E+02 0.0071 29.6 13.6 27 595-621 164-190 (200)
247 2ecc_A Homeobox and leucine zi 47.3 21 0.00071 31.5 4.6 51 1366-1416 9-60 (76)
248 3eco_A MEPR; mutlidrug efflux 47.3 41 0.0014 32.4 7.6 51 565-616 15-67 (139)
249 3hsr_A HTH-type transcriptiona 47.2 33 0.0011 33.4 6.8 54 1355-1411 20-75 (140)
250 1rzs_A Antirepressor, regulato 47.2 7.1 0.00024 32.7 1.6 20 1388-1407 12-31 (61)
251 2rdp_A Putative transcriptiona 46.8 46 0.0016 32.5 8.0 52 1357-1411 28-81 (150)
252 4hbl_A Transcriptional regulat 46.8 42 0.0014 33.0 7.6 52 1357-1411 27-80 (149)
253 2w48_A Sorbitol operon regulat 46.8 16 0.00056 41.5 5.1 33 582-618 11-43 (315)
254 3oop_A LIN2960 protein; protei 46.7 36 0.0012 33.1 7.0 52 1356-1410 22-75 (143)
255 3bro_A Transcriptional regulat 46.5 46 0.0016 32.0 7.8 49 566-615 19-69 (141)
256 3kz3_A Repressor protein CI; f 46.5 16 0.00054 32.0 3.9 22 1388-1409 27-48 (80)
257 1adr_A P22 C2 repressor; trans 46.4 16 0.00055 31.2 3.9 22 1388-1409 20-41 (76)
258 4aik_A Transcriptional regulat 46.3 50 0.0017 32.8 8.1 53 1356-1410 16-70 (151)
259 1s3j_A YUSO protein; structura 46.3 34 0.0012 33.7 6.9 51 1357-1410 23-75 (155)
260 2fa5_A Transcriptional regulat 46.3 49 0.0017 32.8 8.2 53 1356-1411 33-88 (162)
261 2nyx_A Probable transcriptiona 46.2 35 0.0012 34.4 7.1 51 1357-1410 29-83 (168)
262 2ewt_A BLDD, putative DNA-bind 46.1 22 0.00076 29.9 4.7 23 1387-1409 22-46 (71)
263 3s8q_A R-M controller protein; 46.0 18 0.00062 31.6 4.2 23 1387-1409 25-47 (82)
264 1lj9_A Transcriptional regulat 45.9 28 0.00095 33.9 6.1 53 1356-1411 14-68 (144)
265 3mkl_A HTH-type transcriptiona 45.9 1.1E+02 0.0038 28.8 10.2 37 1280-1316 10-46 (120)
266 3k0l_A Repressor protein; heli 45.6 33 0.0011 34.3 6.8 53 1355-1410 30-84 (162)
267 4aik_A Transcriptional regulat 45.5 1.2E+02 0.0041 29.9 10.9 83 500-586 43-127 (151)
268 2da1_A Alpha-fetoprotein enhan 45.5 36 0.0012 29.1 5.9 54 1366-1419 13-67 (70)
269 1r71_A Transcriptional repress 45.4 21 0.00071 37.0 5.1 41 1365-1408 34-74 (178)
270 3g3z_A NMB1585, transcriptiona 45.2 47 0.0016 32.3 7.7 51 1357-1410 17-69 (145)
271 3ech_A MEXR, multidrug resista 45.1 37 0.0013 33.0 6.9 49 566-617 20-72 (142)
272 1neq_A DNA-binding protein NER 45.0 14 0.00049 32.2 3.3 23 1387-1409 23-45 (74)
273 2ppx_A AGR_C_3184P, uncharacte 44.8 18 0.0006 33.3 4.1 30 1375-1408 36-65 (99)
274 1q1h_A TFE, transcription fact 44.7 23 0.00079 33.1 5.0 43 577-625 16-58 (110)
275 2pex_A Transcriptional regulat 44.6 43 0.0015 33.0 7.3 55 1355-1412 31-87 (153)
276 2ef8_A C.ECOT38IS, putative tr 44.5 20 0.00067 31.4 4.2 23 1387-1409 24-46 (84)
277 3bd1_A CRO protein; transcript 44.5 15 0.00052 32.0 3.4 22 1388-1409 13-34 (79)
278 3deu_A Transcriptional regulat 44.4 1E+02 0.0034 30.9 10.3 122 454-587 27-150 (166)
279 2kpj_A SOS-response transcript 44.3 20 0.00069 32.4 4.4 24 1386-1409 22-45 (94)
280 2hr3_A Probable transcriptiona 44.3 30 0.001 33.8 6.0 52 1358-1411 22-75 (147)
281 1ku9_A Hypothetical protein MJ 44.1 43 0.0015 32.6 7.2 48 567-616 12-61 (152)
282 2frh_A SARA, staphylococcal ac 44.0 30 0.001 33.3 5.8 52 1357-1409 23-76 (127)
283 2nnn_A Probable transcriptiona 43.7 42 0.0014 32.3 7.0 48 566-616 24-72 (140)
284 1xmk_A Double-stranded RNA-spe 43.7 14 0.0005 32.7 3.1 38 1369-1409 11-49 (79)
285 3omt_A Uncharacterized protein 43.5 17 0.00059 31.0 3.6 23 1387-1409 22-44 (73)
286 3oop_A LIN2960 protein; protei 43.4 99 0.0034 29.8 9.7 63 455-526 12-74 (143)
287 3kp7_A Transcriptional regulat 43.3 38 0.0013 33.3 6.7 50 1357-1410 24-75 (151)
288 4fx0_A Probable transcriptiona 43.1 54 0.0019 32.4 7.8 55 1356-1410 18-76 (148)
289 2gxg_A 146AA long hypothetical 43.0 51 0.0017 32.0 7.5 44 568-615 24-69 (146)
290 1jhf_A LEXA repressor; LEXA SO 42.9 15 0.00052 38.6 3.8 43 576-618 3-48 (202)
291 1x57_A Endothelial differentia 42.9 26 0.00088 31.4 4.8 23 1387-1409 27-49 (91)
292 2fbk_A Transcriptional regulat 42.8 24 0.00084 36.1 5.3 56 1356-1411 54-111 (181)
293 1y0u_A Arsenical resistance op 42.6 72 0.0025 28.8 7.9 34 578-616 30-63 (96)
294 1b72_B Protein (PBX1); homeodo 42.4 63 0.0022 28.8 7.3 56 1366-1421 7-66 (87)
295 2dk5_A DNA-directed RNA polyme 42.3 18 0.0006 33.1 3.5 46 574-624 15-60 (91)
296 1x2n_A Homeobox protein pknox1 42.1 30 0.001 29.9 4.9 53 1366-1418 13-69 (73)
297 1r1t_A Transcriptional repress 42.0 67 0.0023 30.8 7.9 39 1368-1410 45-83 (122)
298 2k27_A Paired box protein PAX- 42.0 14 0.00047 37.3 3.1 40 576-619 25-64 (159)
299 2kko_A Possible transcriptiona 41.9 21 0.00073 33.4 4.2 35 1371-1409 27-61 (108)
300 2qvo_A Uncharacterized protein 41.9 26 0.00088 31.9 4.7 41 576-616 9-50 (95)
301 3bs3_A Putative DNA-binding pr 41.8 21 0.00072 30.5 3.9 23 1387-1409 24-46 (76)
302 2l0k_A Stage III sporulation p 41.8 24 0.00081 32.4 4.3 36 579-618 7-42 (93)
303 1on2_A Transcriptional regulat 41.7 32 0.0011 33.6 5.7 44 1367-1410 2-46 (142)
304 2fbh_A Transcriptional regulat 41.6 1.7E+02 0.0057 28.0 11.2 63 456-526 13-75 (146)
305 2a61_A Transcriptional regulat 41.5 38 0.0013 32.9 6.3 43 1366-1411 30-72 (145)
306 2qww_A Transcriptional regulat 41.3 52 0.0018 32.4 7.3 51 1358-1411 28-80 (154)
307 4b8x_A SCO5413, possible MARR- 41.3 49 0.0017 32.7 7.1 50 566-616 20-71 (147)
308 3g5g_A Regulatory protein; tra 41.2 23 0.00079 32.7 4.2 22 1388-1409 43-64 (99)
309 3bja_A Transcriptional regulat 41.2 28 0.00097 33.5 5.2 53 1356-1411 18-72 (139)
310 2l8n_A Transcriptional repress 41.2 11 0.00039 32.2 1.9 22 1387-1408 10-31 (67)
311 1puf_B PRE-B-cell leukemia tra 40.9 34 0.0012 29.5 5.1 56 1366-1421 7-66 (73)
312 2dbb_A Putative HTH-type trans 40.8 30 0.001 34.4 5.4 39 575-616 5-43 (151)
313 3cjn_A Transcriptional regulat 40.5 36 0.0012 33.9 6.1 43 1366-1411 49-91 (162)
314 1sfx_A Conserved hypothetical 40.5 49 0.0017 30.1 6.6 42 576-624 17-58 (109)
315 3deu_A Transcriptional regulat 40.4 51 0.0017 33.2 7.2 54 1355-1410 37-92 (166)
316 2o38_A Hypothetical protein; a 40.2 23 0.0008 34.0 4.2 31 1374-1408 45-75 (120)
317 1sfu_A 34L protein; protein/Z- 40.2 43 0.0015 29.3 5.4 41 567-625 14-54 (75)
318 2fa5_A Transcriptional regulat 40.0 1.6E+02 0.0056 28.9 11.0 64 454-526 22-86 (162)
319 2wus_R RODZ, putative uncharac 39.9 29 0.00098 32.9 4.8 30 1376-1409 14-43 (112)
320 3boq_A Transcriptional regulat 39.7 33 0.0011 34.1 5.6 54 1356-1411 31-87 (160)
321 2cfx_A HTH-type transcriptiona 39.7 32 0.0011 34.0 5.4 38 576-616 2-39 (144)
322 1j1v_A Chromosomal replication 39.6 53 0.0018 30.1 6.3 43 1369-1415 33-76 (94)
323 2jrt_A Uncharacterized protein 39.6 22 0.00076 32.7 3.8 52 1371-1426 37-89 (95)
324 1bl0_A Protein (multiple antib 39.5 1.1E+02 0.0036 29.4 9.0 39 489-527 13-51 (129)
325 3b73_A PHIH1 repressor-like pr 39.1 32 0.0011 32.6 4.9 41 1367-1410 11-53 (111)
326 3e6m_A MARR family transcripti 39.1 43 0.0015 33.4 6.4 52 1356-1410 38-91 (161)
327 2dmn_A Homeobox protein TGIF2L 38.9 43 0.0015 29.8 5.5 54 1366-1419 13-70 (83)
328 3tgn_A ADC operon repressor AD 38.8 32 0.0011 33.5 5.2 36 577-616 36-71 (146)
329 3a03_A T-cell leukemia homeobo 38.7 34 0.0012 27.8 4.5 51 1366-1416 3-54 (56)
330 1r1u_A CZRA, repressor protein 38.7 62 0.0021 29.9 6.9 44 569-616 15-59 (106)
331 1u2w_A CADC repressor, cadmium 38.7 30 0.001 33.1 4.9 39 1368-1409 41-79 (122)
332 2x4h_A Hypothetical protein SS 38.5 34 0.0012 33.3 5.3 43 574-616 8-51 (139)
333 2k40_A Homeobox expressed in E 38.5 47 0.0016 28.1 5.5 55 1366-1420 7-62 (67)
334 1z4h_A TORI, TOR inhibition pr 38.4 22 0.00075 30.1 3.3 24 1387-1410 11-34 (66)
335 3trb_A Virulence-associated pr 38.2 26 0.0009 32.7 4.1 22 1387-1408 28-49 (104)
336 2eth_A Transcriptional regulat 38.0 34 0.0012 33.9 5.3 44 1366-1412 41-84 (154)
337 2hwv_A DNA-binding response re 38.0 54 0.0018 31.4 6.5 50 1366-1416 43-97 (121)
338 2heo_A Z-DNA binding protein 1 37.8 33 0.0011 29.2 4.3 29 1289-1317 21-49 (67)
339 3bpv_A Transcriptional regulat 37.8 72 0.0025 30.5 7.6 49 565-616 13-63 (138)
340 2cyy_A Putative HTH-type trans 37.8 35 0.0012 33.9 5.4 38 576-616 4-41 (151)
341 2wte_A CSA3; antiviral protein 37.7 47 0.0016 36.2 6.7 44 1363-1409 146-189 (244)
342 3f3x_A Transcriptional regulat 37.6 62 0.0021 31.4 7.1 37 576-616 34-70 (144)
343 3e6m_A MARR family transcripti 37.6 1.2E+02 0.004 30.0 9.4 65 453-526 26-90 (161)
344 3u2r_A Regulatory protein MARR 37.6 36 0.0012 34.3 5.5 55 1355-1410 30-86 (168)
345 2dn0_A Zinc fingers and homeob 37.5 43 0.0015 29.2 5.2 55 1366-1420 14-69 (76)
346 2auw_A Hypothetical protein NE 37.5 26 0.00088 35.9 4.2 37 1366-1408 89-125 (170)
347 2da2_A Alpha-fetoprotein enhan 37.4 37 0.0013 29.0 4.7 53 1367-1419 14-67 (70)
348 1yz8_P Pituitary homeobox 2; D 37.4 56 0.0019 27.7 5.8 53 1366-1418 9-62 (68)
349 1z91_A Organic hydroperoxide r 37.3 35 0.0012 33.2 5.3 54 1357-1413 26-81 (147)
350 2fu4_A Ferric uptake regulatio 37.2 54 0.0019 28.7 6.0 39 576-615 14-57 (83)
351 3a02_A Homeobox protein arista 37.1 43 0.0015 27.6 4.9 52 1366-1417 5-57 (60)
352 1xn7_A Hypothetical protein YH 37.1 35 0.0012 30.1 4.5 29 1385-1413 15-43 (78)
353 3kxa_A NGO0477 protein, putati 37.0 28 0.00097 34.4 4.4 32 1374-1409 73-104 (141)
354 2hdd_A Protein (engrailed home 36.9 47 0.0016 27.4 5.1 51 1366-1416 9-60 (61)
355 2oa4_A SIR5; structure, struct 36.8 27 0.00093 32.5 3.8 52 1371-1426 39-90 (101)
356 1j5y_A Transcriptional regulat 36.8 31 0.001 35.9 4.9 39 1369-1409 21-59 (187)
357 1ub9_A Hypothetical protein PH 36.8 33 0.0011 31.0 4.6 39 1368-1409 15-53 (100)
358 3cuo_A Uncharacterized HTH-typ 36.7 41 0.0014 30.4 5.2 42 571-615 15-57 (99)
359 2lk2_A Homeobox protein TGIF1; 36.7 44 0.0015 30.3 5.1 53 1367-1419 12-68 (89)
360 2da4_A Hypothetical protein DK 36.7 43 0.0015 29.5 5.1 50 1367-1416 15-69 (80)
361 2w25_A Probable transcriptiona 36.6 37 0.0013 33.6 5.3 38 576-616 4-41 (150)
362 2fbi_A Probable transcriptiona 36.6 37 0.0013 32.8 5.2 43 1366-1411 33-75 (142)
363 3vk0_A NHTF, transcriptional r 36.6 24 0.00083 33.3 3.7 21 1388-1408 36-56 (114)
364 2p5v_A Transcriptional regulat 36.6 37 0.0013 34.2 5.3 38 576-616 7-44 (162)
365 3op9_A PLI0006 protein; struct 36.4 30 0.001 32.4 4.4 29 1377-1409 17-45 (114)
366 1lmb_3 Protein (lambda repress 36.4 27 0.00093 31.2 3.9 22 1388-1409 32-53 (92)
367 2cg4_A Regulatory protein ASNC 36.3 38 0.0013 33.7 5.4 38 576-616 5-42 (152)
368 3jth_A Transcription activator 36.3 72 0.0025 28.8 6.9 49 569-625 12-61 (98)
369 1vz0_A PARB, chromosome partit 36.2 35 0.0012 36.9 5.3 41 1365-1408 116-156 (230)
370 3jw4_A Transcriptional regulat 36.2 1.1E+02 0.0037 29.7 8.8 65 455-526 16-80 (148)
371 2b0l_A GTP-sensing transcripti 36.2 24 0.00083 32.9 3.5 25 1388-1416 45-69 (102)
372 2rn7_A IS629 ORFA; helix, all 36.0 30 0.001 32.2 4.2 43 577-619 7-53 (108)
373 3qwg_A ESX-1 secretion-associa 35.9 23 0.00078 34.3 3.4 40 1368-1408 7-51 (123)
374 2y75_A HTH-type transcriptiona 35.9 38 0.0013 32.6 5.1 26 1384-1409 24-49 (129)
375 3mlf_A Transcriptional regulat 35.8 32 0.0011 32.4 4.4 29 1377-1409 31-59 (111)
376 2vz4_A Tipal, HTH-type transcr 35.7 19 0.00066 33.8 2.8 25 1387-1411 2-26 (108)
377 1g2h_A Transcriptional regulat 35.6 39 0.0013 28.1 4.4 21 1388-1408 35-55 (61)
378 3s2w_A Transcriptional regulat 35.6 53 0.0018 32.6 6.4 54 1355-1411 34-89 (159)
379 2ict_A Antitoxin HIGA; helix-t 35.5 34 0.0012 30.8 4.4 22 1388-1409 23-44 (94)
380 3hyi_A Protein DUF199/WHIA; la 35.5 91 0.0031 34.9 8.6 54 1355-1411 230-285 (295)
381 1okr_A MECI, methicillin resis 35.4 26 0.00089 33.3 3.8 46 1364-1412 5-54 (123)
382 3pqk_A Biofilm growth-associat 35.2 75 0.0026 29.0 6.9 43 569-615 12-55 (102)
383 3bj6_A Transcriptional regulat 35.2 67 0.0023 31.4 7.0 47 567-616 26-74 (152)
384 3fmy_A HTH-type transcriptiona 35.2 27 0.00091 30.0 3.4 36 577-618 11-46 (73)
385 3jw4_A Transcriptional regulat 35.2 33 0.0011 33.6 4.7 52 1358-1410 28-81 (148)
386 3k0l_A Repressor protein; heli 34.8 70 0.0024 31.8 7.1 49 565-616 30-80 (162)
387 1p6r_A Penicillinase repressor 34.8 38 0.0013 29.7 4.5 38 575-615 5-46 (82)
388 2k4j_A Putative transcriptiona 34.8 49 0.0017 31.3 5.6 50 1366-1416 41-95 (115)
389 1mnm_C Protein (MAT alpha-2 tr 34.8 90 0.0031 27.9 7.0 50 1366-1415 33-86 (87)
390 2frh_A SARA, staphylococcal ac 34.8 70 0.0024 30.6 6.8 48 567-615 23-72 (127)
391 1jgs_A Multiple antibiotic res 34.6 87 0.003 29.9 7.6 50 565-617 18-69 (138)
392 2zkz_A Transcriptional repress 34.5 47 0.0016 30.4 5.2 37 578-617 26-62 (99)
393 3o9x_A Uncharacterized HTH-typ 34.5 66 0.0022 31.1 6.6 38 575-618 69-106 (133)
394 3nrv_A Putative transcriptiona 34.3 47 0.0016 32.4 5.7 49 566-617 24-75 (148)
395 2gau_A Transcriptional regulat 34.3 88 0.003 32.9 8.3 45 1364-1408 148-202 (232)
396 3mn2_A Probable ARAC family tr 34.2 58 0.002 30.1 6.0 39 489-527 4-42 (108)
397 1uxc_A FRUR (1-57), fructose r 34.2 23 0.00077 30.1 2.7 21 598-618 2-22 (65)
398 3cdh_A Transcriptional regulat 34.2 77 0.0026 31.1 7.3 49 566-617 28-78 (155)
399 3kp7_A Transcriptional regulat 34.2 74 0.0025 31.1 7.1 47 567-617 24-72 (151)
400 1tbx_A ORF F-93, hypothetical 34.1 32 0.0011 31.3 4.0 43 1366-1411 5-51 (99)
401 2rdp_A Putative transcriptiona 34.0 78 0.0027 30.8 7.3 48 567-617 28-77 (150)
402 3nau_A Zinc fingers and homeob 34.0 46 0.0016 28.4 4.4 50 1367-1416 11-61 (66)
403 2pij_A Prophage PFL 6 CRO; tra 33.9 30 0.001 28.9 3.5 20 1388-1407 15-34 (67)
404 2kfs_A Conserved hypothetical 33.9 20 0.00068 35.7 2.6 24 1387-1410 32-55 (148)
405 1lj9_A Transcriptional regulat 33.9 65 0.0022 31.1 6.6 49 565-616 13-63 (144)
406 4hbl_A Transcriptional regulat 33.9 93 0.0032 30.4 7.8 47 567-616 27-75 (149)
407 1b0n_A Protein (SINR protein); 33.8 34 0.0012 31.7 4.2 23 1387-1409 15-37 (111)
408 2l49_A C protein; P2 bacteriop 33.8 30 0.001 31.4 3.8 23 1387-1409 18-40 (99)
409 2dmu_A Homeobox protein goosec 33.7 42 0.0014 28.6 4.4 52 1367-1418 14-66 (70)
410 2dmt_A Homeobox protein BARH-l 33.7 45 0.0015 29.4 4.7 53 1367-1419 24-77 (80)
411 2fbk_A Transcriptional regulat 33.6 51 0.0017 33.7 5.9 51 566-616 54-106 (181)
412 3bdd_A Regulatory protein MARR 33.6 85 0.0029 30.1 7.4 38 576-616 28-65 (142)
413 1ig7_A Homeotic protein MSX-1; 33.6 47 0.0016 27.1 4.5 51 1366-1416 6-57 (58)
414 2vn2_A DNAD, chromosome replic 33.5 60 0.0021 31.4 6.1 47 1366-1412 29-77 (128)
415 2ly9_A Zinc fingers and homeob 33.5 46 0.0016 28.7 4.7 55 1367-1421 13-68 (74)
416 3rjp_A COVR; winged helix-turn 33.4 64 0.0022 29.2 6.0 51 1366-1417 22-77 (96)
417 3gbg_A TCP pilus virulence reg 33.4 1.7E+02 0.0058 31.8 10.7 36 1280-1315 172-207 (276)
418 1ahd_P Antennapedia protein mu 33.4 59 0.002 27.6 5.3 53 1366-1418 8-61 (68)
419 2k02_A Ferrous iron transport 33.3 26 0.00088 31.7 3.0 22 1388-1409 18-39 (87)
420 2r0q_C Putative transposon TN5 33.3 26 0.00089 37.1 3.7 32 1372-1408 166-197 (209)
421 2e1o_A Homeobox protein PRH; D 33.3 38 0.0013 28.9 4.1 52 1367-1418 14-66 (70)
422 3bja_A Transcriptional regulat 33.2 63 0.0022 30.9 6.3 48 566-616 18-67 (139)
423 2e1c_A Putative HTH-type trans 33.0 45 0.0015 34.1 5.3 38 576-616 24-61 (171)
424 3hsr_A HTH-type transcriptiona 33.0 67 0.0023 31.0 6.5 49 565-616 20-70 (140)
425 3ivp_A Putative transposon-rel 32.9 41 0.0014 32.2 4.8 29 1377-1409 20-48 (126)
426 2l9r_A Homeobox protein NKX-3. 32.9 40 0.0014 29.0 4.1 54 1367-1420 11-65 (69)
427 1rr7_A Middle operon regulator 32.9 62 0.0021 31.5 5.9 39 1369-1413 81-119 (129)
428 2oqg_A Possible transcriptiona 32.7 70 0.0024 29.7 6.3 43 570-616 11-54 (114)
429 2cra_A Homeobox protein HOX-B1 32.7 43 0.0015 28.6 4.3 53 1367-1419 14-67 (70)
430 3rkx_A Biotin-[acetyl-COA-carb 32.6 32 0.0011 39.2 4.5 39 1369-1408 3-41 (323)
431 2ao9_A Phage protein; structur 32.6 33 0.0011 34.6 4.0 47 1363-1409 20-71 (155)
432 1i1g_A Transcriptional regulat 32.5 39 0.0013 33.0 4.6 42 577-625 2-43 (141)
433 2lkp_A Transcriptional regulat 32.5 91 0.0031 29.3 7.2 49 570-626 22-71 (119)
434 3f6o_A Probable transcriptiona 32.4 35 0.0012 32.4 4.1 43 1363-1409 11-54 (118)
435 3i4p_A Transcriptional regulat 32.4 47 0.0016 33.5 5.3 38 577-617 1-38 (162)
436 2pg4_A Uncharacterized protein 32.3 33 0.0011 31.1 3.8 27 1386-1412 30-57 (95)
437 3u2r_A Regulatory protein MARR 32.2 68 0.0023 32.1 6.6 51 565-616 30-82 (168)
438 1ic8_A Hepatocyte nuclear fact 32.2 90 0.0031 32.7 7.4 57 1344-1408 7-65 (194)
439 1j9i_A GPNU1 DBD;, terminase s 32.2 13 0.00044 31.7 0.9 24 1388-1411 4-27 (68)
440 3rkq_A Homeobox protein NKX-2. 32.2 69 0.0023 25.9 5.4 49 1366-1414 8-57 (58)
441 1fx7_A Iron-dependent represso 32.1 21 0.00072 38.5 2.8 44 1365-1409 2-47 (230)
442 2bv6_A MGRA, HTH-type transcri 32.1 44 0.0015 32.3 5.0 42 1366-1410 34-75 (142)
443 2djn_A Homeobox protein DLX-5; 32.1 43 0.0015 28.6 4.2 53 1367-1419 14-67 (70)
444 1jgg_A Segmentation protein EV 32.0 50 0.0017 27.2 4.5 51 1366-1416 7-58 (60)
445 2k9l_A RNA polymerase sigma fa 31.9 1.1E+02 0.0039 26.5 7.0 57 1353-1416 15-74 (76)
446 1zug_A Phage 434 CRO protein; 31.9 40 0.0014 28.1 4.0 22 597-618 17-38 (71)
447 3e7l_A Transcriptional regulat 31.9 43 0.0015 28.0 4.1 22 1388-1409 34-55 (63)
448 2jsc_A Transcriptional regulat 31.8 35 0.0012 32.5 4.0 36 1369-1408 21-56 (118)
449 1r69_A Repressor protein CI; g 31.8 36 0.0012 28.2 3.7 22 597-618 15-36 (69)
450 3f6w_A XRE-family like protein 31.7 32 0.0011 30.0 3.4 28 587-618 22-49 (83)
451 2fxa_A Protease production reg 31.6 91 0.0031 32.8 7.6 51 1357-1410 34-86 (207)
452 1akh_A Protein (mating-type pr 31.5 52 0.0018 27.1 4.5 49 1366-1414 11-60 (61)
453 3f52_A CLP gene regulator (CLG 31.3 35 0.0012 32.2 3.9 22 1388-1409 43-64 (117)
454 2r1j_L Repressor protein C2; p 31.2 34 0.0012 28.2 3.4 22 597-618 19-40 (68)
455 2nyx_A Probable transcriptiona 31.2 86 0.0029 31.4 7.2 47 567-616 29-79 (168)
456 1s3j_A YUSO protein; structura 31.2 84 0.0029 30.8 7.0 47 567-616 23-71 (155)
457 2a6c_A Helix-turn-helix motif; 31.2 36 0.0012 29.9 3.7 22 597-618 32-53 (83)
458 3tqn_A Transcriptional regulat 31.2 29 0.00099 32.8 3.2 24 1388-1415 35-58 (113)
459 3boq_A Transcriptional regulat 31.0 78 0.0027 31.2 6.7 50 566-617 31-83 (160)
460 2kko_A Possible transcriptiona 30.8 56 0.0019 30.5 5.2 42 570-615 15-57 (108)
461 3qq6_A HTH-type transcriptiona 30.8 37 0.0013 29.5 3.7 30 586-619 17-46 (78)
462 3b7h_A Prophage LP1 protein 11 30.8 42 0.0014 28.7 4.0 22 597-618 21-42 (78)
463 2pn6_A ST1022, 150AA long hypo 30.8 52 0.0018 32.5 5.3 37 577-616 1-37 (150)
464 1vz0_A PARB, chromosome partit 30.8 47 0.0016 35.9 5.2 55 575-634 116-170 (230)
465 2jvl_A TRMBF1; coactivator, he 30.7 36 0.0012 31.7 3.8 22 1388-1409 51-72 (107)
466 2xi8_A Putative transcription 30.5 35 0.0012 28.0 3.4 23 596-618 14-36 (66)
467 4ghj_A Probable transcriptiona 30.5 36 0.0012 31.6 3.7 29 586-618 43-71 (101)
468 1uhs_A HOP, homeodomain only p 30.4 59 0.002 27.9 4.9 53 1366-1418 7-61 (72)
469 2g9w_A Conserved hypothetical 30.4 58 0.002 31.8 5.5 46 1364-1411 4-53 (138)
470 1gxq_A PHOB, phosphate regulon 30.4 67 0.0023 29.7 5.6 51 1366-1417 31-86 (106)
471 1fjl_A Paired protein; DNA-bin 30.3 54 0.0018 28.9 4.7 53 1366-1418 24-77 (81)
472 2pex_A Transcriptional regulat 30.3 91 0.0031 30.5 7.0 50 565-617 31-82 (153)
473 3r1f_A ESX-1 secretion-associa 30.2 31 0.0011 33.9 3.3 41 1367-1408 8-53 (135)
474 2a61_A Transcriptional regulat 30.2 67 0.0023 31.0 5.9 38 576-616 30-67 (145)
475 3eus_A DNA-binding protein; st 30.2 39 0.0013 30.0 3.8 22 597-618 28-49 (86)
476 2pmu_A Response regulator PHOP 30.1 57 0.002 30.5 5.1 50 1366-1416 34-88 (110)
477 2k9q_A Uncharacterized protein 30.1 36 0.0012 29.3 3.4 22 597-618 16-37 (77)
478 1y7y_A C.AHDI; helix-turn-heli 30.0 45 0.0015 28.1 4.0 22 597-618 27-48 (74)
479 1neq_A DNA-binding protein NER 30.0 24 0.00083 30.7 2.3 24 596-619 22-45 (74)
480 2dmq_A LIM/homeobox protein LH 30.0 53 0.0018 28.8 4.5 52 1367-1418 14-66 (80)
481 1r8d_A Transcription activator 29.9 22 0.00075 33.5 2.1 25 1387-1411 3-27 (109)
482 1bia_A BIRA bifunctional prote 29.9 59 0.002 36.9 6.1 40 1367-1409 3-42 (321)
483 1uly_A Hypothetical protein PH 29.8 57 0.002 34.0 5.6 36 577-616 18-53 (192)
484 2ek5_A Predicted transcription 29.8 39 0.0013 32.9 3.9 25 1388-1416 30-54 (129)
485 3neu_A LIN1836 protein; struct 29.8 34 0.0012 33.0 3.5 24 1388-1415 39-62 (125)
486 3g3z_A NMB1585, transcriptiona 29.7 1E+02 0.0035 29.7 7.3 48 566-616 16-65 (145)
487 3lfp_A CSP231I C protein; tran 29.6 49 0.0017 30.0 4.5 22 1388-1409 16-41 (98)
488 4fx0_A Probable transcriptiona 29.6 1.1E+02 0.0036 30.2 7.3 52 566-617 18-73 (148)
489 3cec_A Putative antidote prote 29.6 40 0.0014 31.0 3.9 22 1388-1409 33-54 (104)
490 1hlv_A CENP-B, major centromer 29.3 55 0.0019 31.4 5.0 41 576-619 7-48 (131)
491 2cue_A Paired box protein PAX6 29.2 76 0.0026 27.8 5.5 55 1366-1420 13-68 (80)
492 3fym_A Putative uncharacterize 29.2 44 0.0015 32.4 4.3 30 1376-1409 10-39 (130)
493 1du6_A PBX1, homeobox protein 29.2 28 0.00096 29.2 2.5 51 1366-1416 9-63 (64)
494 3cjn_A Transcriptional regulat 29.1 71 0.0024 31.7 6.0 46 568-616 39-86 (162)
495 2b5a_A C.BCLI; helix-turn-heli 29.0 47 0.0016 28.3 4.0 22 597-618 24-45 (77)
496 2da3_A Alpha-fetoprotein enhan 29.0 34 0.0012 30.0 3.1 53 1367-1419 24-77 (80)
497 1zq3_P PRD-4, homeotic bicoid 28.9 68 0.0023 27.2 4.9 53 1366-1418 8-61 (68)
498 2wiu_B HTH-type transcriptiona 28.9 49 0.0017 29.1 4.2 22 597-618 26-47 (88)
499 2hi3_A Homeodomain-only protei 28.7 65 0.0022 27.8 4.8 53 1366-1418 8-62 (73)
500 2qq9_A Diphtheria toxin repres 28.7 23 0.00078 38.1 2.3 45 1365-1410 2-48 (226)
No 1
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=100.00 E-value=2.9e-103 Score=992.21 Aligned_cols=583 Identities=50% Similarity=0.809 Sum_probs=435.3
Q ss_pred HHHHHHHHHHhccccCcccHHHHHhhCCCCCCCHHHHHHHHHHHhhCCCcccccCCchhhhhccCCCCCchhhHHHHhhh
Q psy15215 39 LRKKFKILIKLGKERGYLTFSEINDFLPEDIIDHEIIESIIKTFRYMDISVSEHVLDTETLMLSNITSDDDVEEATEAAL 118 (1432)
Q Consensus 39 ~~~~l~~Li~~Gke~G~lTy~EInd~LP~~~~~~d~id~ii~~L~~~gI~v~d~~~~~~~~~~~~~~~de~~~~~~~~~l 118 (1432)
.++.++.||++||++|||||+||||+||++.+++|+||+|+.+|++|||+|+|.+++.+.+.+++...++++.++++.++
T Consensus 5 ~~~~~~~li~~~k~~g~lt~~ei~~~l~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 84 (613)
T 3iyd_F 5 PQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVL 84 (613)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhcCcccHHHHHHhCcccCCCHHHHHHHHHHHHHCCCeeeecCCchhhhhcccccchhhhhhHHHHhh
Confidence 45689999999999999999999999999999999999999999999999999887766554443322333333445566
Q ss_pred ccCCCCCCCCCChHHHHHHhcCCccCCCchHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHhhhcccchhhhhcc
Q psy15215 119 STVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDG 198 (1432)
Q Consensus 119 ~~~~~~~grt~DPVRmYLREMG~V~LLTREgEIeIAKRIE~G~~~v~~al~~~P~~v~~il~~~e~l~~ge~rl~dii~g 198 (1432)
+.+++++|+|+|||||||||||+||||||||||+||||||+|.++|+.+||.||++|.+|++|+++|.+|+++|+|||+|
T Consensus 85 ~~~~~~~~~~~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g~~~~~~~~~~~P~ti~~il~~~~~l~~ge~rl~dii~g 164 (613)
T 3iyd_F 85 SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYNRVEAEEARLSDLITG 164 (613)
T ss_dssp --------------------C--------CSSSTTTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSSCGGGTBCC
T ss_pred ccccccccCCCCcHHHHHHHhcccccCCchhHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHHHHcCCCcHHHHHcc
Confidence 76777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcc--h---h-----ccCCCCCChh-hh----hhhcCCCCCCHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15215 199 LIDKNFSSNN--R---V-----IKGNKNNNEE-KI----LIESSSADLSTEQLEKLKYESLIKFSNISFHFDKMRKAFEK 263 (1432)
Q Consensus 199 ~~d~~~~~~~--~---~-----~~~~~~~~e~-~d----~~~~~~~~~~~~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~ 263 (1432)
|.||+..+.. . . +++.++++++ ++ ++...+.++ .++.+.++|..|++.|.++++++++
T Consensus 165 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~e~~~~~f~~l~~~~~~~~~~~~k 237 (613)
T 3iyd_F 165 FVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSI-------DPELAREKFAELRAQYVVTRDTIKA 237 (613)
T ss_dssp CCSCSSSCCSCCSCCTTSCSSCGGGCC--------------------C-------CHHHHHHHHHHHTTTHHHHTTTTTT
T ss_pred cCCCccccccccccccccccccccccccccccccccccchhhhhhcCC-------CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998632210 0 0 0000000000 00 001112222 2456689999999999999998888
Q ss_pred cCCCcHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhcCCCccchhhhh
Q psy15215 264 EGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVD 343 (1432)
Q Consensus 264 ~g~~~~~~~k~~~~i~~~l~~ikl~~k~ie~l~~~l~~~~~~ir~~Er~i~~~~v~~~gmpr~~fi~~f~~~e~~~~wl~ 343 (1432)
+|..++.+.+++..|++.|++|+|+|++|++||+.|+..+++|+.+||.|+++|++.|||||++|++.|+||++|+.|++
T Consensus 238 ~g~~~~~~~~~~~~l~~~~~~lkL~~k~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~mpr~~Fi~~f~g~e~~~~w~~ 317 (613)
T 3iyd_F 238 KGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFN 317 (613)
T ss_dssp CCSCSHHHHHHHHHHHHHHTTSCBCHHHHHHHTHHHHTTTHHHHHHHHHHHHTTTTTTTCCGGGTTTTTTTCCSSTTTTH
T ss_pred cccchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcccccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhcCchHHHHhhchHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhcccC
Q psy15215 344 NETKIQHDYNLILCRNIPSIKELQQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDR 423 (1432)
Q Consensus 344 ~~~~~~~~~~~~L~~~~~~i~~~q~~L~~iE~~~~l~~~e~~~l~~~i~~gd~~~~~A~~~li~~~~~lV~~ia~ky~~~ 423 (1432)
++++.+++|++.|.+..++|+.+|++|.+++..++|+..+...|+.+++.||..++.|+..||..|+++|+++|++|+++
T Consensus 318 ~~~~~~~~~~~~l~~~~~~I~~~q~kL~~ie~~~~~~~~~~~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~ 397 (613)
T 3iyd_F 318 AAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNR 397 (613)
T ss_dssp HHHTTCCTTGGGGGGTHHHHHHHHHHHHHHHHHHTSCTTTHHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTT
T ss_pred HHHHhhccHHHHHHHhHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999977779999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhhccccCCCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhCCC
Q psy15215 424 GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSE 503 (1432)
Q Consensus 424 ~~~~~DLiQEg~igL~kav~~fd~~~g~~Fstya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~~r~~~~~~~~~g~~ 503 (1432)
+.+++||+||||||||+++++|++.+|++|+||++|||||+|+++++++.+++|+|+|+++++|+++++++++.+++|++
T Consensus 398 ~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~ 477 (613)
T 3iyd_F 398 GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 (613)
T ss_dssp SSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHHHHHHHTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHHHHHHHHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCCCCCCCCcCcccccCCCCChHHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy15215 504 PDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESK 583 (1432)
Q Consensus 504 pt~~eia~~~~~~~~~v~~~~~~~~~~~sl~~~~~~~~~~~~~~~i~d~~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~ 583 (1432)
||++|||+.||||+++|+.+++.+..++|++.|+++++++.+.+++++....+|.+.+...++...|..+|++|||++|.
T Consensus 478 pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~~~~~l~d~i~d~~~~~p~~~~~~~e~~~~l~~aL~~Lp~~er~ 557 (613)
T 3iyd_F 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAK 557 (613)
T ss_dssp CCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSSSSCCGGGSCCCSSSCCHHHHHHHHTTSSSHHHHTTSSCHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCCCCccHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999888888999999988889999999988899999999999999999
Q ss_pred HHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q psy15215 584 VLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLA 628 (1432)
Q Consensus 584 Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~~l 628 (1432)
||.|||+++++.++|++|||+.||+|+++|+++.++|+++||+++
T Consensus 558 Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~~~ 602 (613)
T 3iyd_F 558 VLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 (613)
T ss_dssp HHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTSCS
T ss_pred HHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhCcc
Confidence 999999988878889999999999999999999999999999765
No 2
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=100.00 E-value=3.4e-103 Score=991.49 Aligned_cols=594 Identities=51% Similarity=0.815 Sum_probs=445.2
Q ss_pred HHHHHHHHHHhccccCccchHHHhhhCCCCCCCHHHHHHHHHHHHhcCccccccccchhhhhccCCCCCchhHHHHHhhh
Q psy15215 829 LRKKFKILIKLGKERGYLTFSEINDFLPEDIIDHEIIESIIKTFRYMDISVSEHVLDTETLMLSNITSDDDVEEATEAAL 908 (1432)
Q Consensus 829 ~~~~~~~Li~~gk~~g~lT~~ei~~~lp~~~~~~e~ie~i~~~l~~~gI~v~e~~~~~e~~~~~~~~~de~~~e~~~~~~ 908 (1432)
.+..++.||..||++|||||+|||++||++.+++|++++|+.+|+++||+|++.+++.+++.+++...++++.++++.++
T Consensus 5 ~~~~~~~li~~~k~~g~lt~~ei~~~l~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 84 (613)
T 3iyd_F 5 PQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVL 84 (613)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhcCcccHHHHHHhCcccCCCHHHHHHHHHHHHHCCCeeeecCCchhhhhcccccchhhhhhHHHHhh
Confidence 35678999999999999999999999999999999999999999999999999887766554433222333333445566
Q ss_pred ccCCCCCCCCCChHHHHHHccCCccCCCchHHHHHHHHHHHhHHHHHHHHhhChHHHHHHHHHHHHhhhcccchhhhhcc
Q psy15215 909 STVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDG 988 (1432)
Q Consensus 909 ~~~~~~~grt~DPVRmYLREMG~v~LLTREgEIeIAKRIE~G~~~v~~al~~~P~~v~~il~~~e~l~~ge~~l~dii~g 988 (1432)
+.+++++|+|+|||||||||||+||||||||||+||||||+|.++|+.+||.||++|.+|++|+++|.+|+++|+|||+|
T Consensus 85 ~~~~~~~~~~~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g~~~~~~~~~~~P~ti~~il~~~~~l~~ge~rl~dii~g 164 (613)
T 3iyd_F 85 SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYNRVEAEEARLSDLITG 164 (613)
T ss_dssp --------------------C--------CSSSTTTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSSCGGGTBCC
T ss_pred ccccccccCCCCcHHHHHHHhcccccCCchhHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHHHHcCCCcHHHHHcc
Confidence 66777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCch--h---hc----c-CCCCCchh-hh----hhhccCCCCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15215 989 LIDKNFSSNN--R---VI----K-GNKNNNEE-KI----LIESSSADLSTEQLEKLKYESLIKFSNISFHFDKMRKAFEK 1053 (1432)
Q Consensus 989 ~~d~~~~~~~--~---~~----~-~~~~~e~~-~d----~~~~~~~~~~~~~l~~l~~~~~~~f~~l~~~~~~~~~~~~~ 1053 (1432)
|.||+..+.. . .. + +.++++++ ++ ++...+.+++ ++.+.++|..|+++|+++++++.+
T Consensus 165 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~e~~~~~f~~l~~~~~~~~~~~~k 237 (613)
T 3iyd_F 165 FVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSID-------PELAREKFAELRAQYVVTRDTIKA 237 (613)
T ss_dssp CCSCSSSCCSCCSCCTTSCSSCGGGCC--------------------CC-------HHHHHHHHHHHTTTHHHHTTTTTT
T ss_pred cCCCccccccccccccccccccccccccccccccccccchhhhhhcCCC-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998632210 0 00 0 00000000 00 0011122222 356689999999999999999888
Q ss_pred hCCCcHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCccchhhHH
Q psy15215 1054 EGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVD 1133 (1432)
Q Consensus 1054 ~~~~~~~~~k~~~~i~~~l~~irl~~k~i~~l~~~l~~~~~~ir~~Er~i~~~~~~~~~m~r~~fl~~f~~~e~~~~wl~ 1133 (1432)
+|..++.+.+++..|++.|++|+|+|++|++||+.|+..+++|+.+||.|+++|++.|||||++|++.|+||++|+.|+.
T Consensus 238 ~g~~~~~~~~~~~~l~~~~~~lkL~~k~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~mpr~~Fi~~f~g~e~~~~w~~ 317 (613)
T 3iyd_F 238 KGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFN 317 (613)
T ss_dssp CCSCSHHHHHHHHHHHHHHTTSCBCHHHHHHHTHHHHTTTHHHHHHHHHHHHTTTTTTTCCGGGTTTTTTTCCSSTTTTH
T ss_pred cccchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcccccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCchhHHHhhchHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhccCC
Q psy15215 1134 NETKIQHDYNLILCRNIPSIKELQQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDR 1213 (1432)
Q Consensus 1134 ~~~~~~~~~~~~L~~~~~~I~~~q~~L~~ie~~~~l~~~e~~~l~~~~~~g~~~~~~A~~~Li~~~~~lV~~ia~~y~~~ 1213 (1432)
++++.+++|++.|.+..++|..+|++|.+++..++|+..+...|+.+++.|+..++.||+.||++|+++|+++|++|+++
T Consensus 318 ~~~~~~~~~~~~l~~~~~~I~~~q~kL~~ie~~~~~~~~~~~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~ 397 (613)
T 3iyd_F 318 AAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNR 397 (613)
T ss_dssp HHHTTCCTTGGGGGGTHHHHHHHHHHHHHHHHHHTSCTTTHHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTT
T ss_pred HHHHhhccHHHHHHHhHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999977779999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHhCCC
Q psy15215 1214 GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSE 1293 (1432)
Q Consensus 1214 ~~~~~DLiQEg~igl~kav~kfd~~~g~~Fstya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~~~~~~~~~~~~g~~ 1293 (1432)
+.+++||+||||+|||+++++|++.+|++|+||++|||||+|+++++++.+++|+|+|+++++|+++++.+++.+++||+
T Consensus 398 ~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~ 477 (613)
T 3iyd_F 398 GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 (613)
T ss_dssp SSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHHHHHHHTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHHHHHHHHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCCCCCCCCcCcccccCCCCChHHHHHHHHHHHHHHHHHccCCHHHHH
Q psy15215 1294 PDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESK 1373 (1432)
Q Consensus 1294 pt~~eia~~~~~~~~~v~~~~~~~~~~~Sl~~~~~~~~~~~~~d~i~d~~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~ 1373 (1432)
||++|||+.||+|+++|+.+++.+..++|++.|++++++..+.+++++....+|++.+...++...|..+|++|||++|.
T Consensus 478 pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~~~~~l~d~i~d~~~~~p~~~~~~~e~~~~l~~aL~~Lp~~er~ 557 (613)
T 3iyd_F 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAK 557 (613)
T ss_dssp CCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSSSSCCGGGSCCCSSSCCHHHHHHHHTTSSSHHHHTTSSCHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCCCCccHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999988889999999988889999999989999999999999999999
Q ss_pred HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHHhhhcc
Q psy15215 1374 VLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIFLEG 1429 (1432)
Q Consensus 1374 Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~~~~~~ 1429 (1432)
||.|||+++++.++|++|||+.||||++||+++++||+++||++.++..|+.|+++
T Consensus 558 Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~~~~~~~l~~~l~~ 613 (613)
T 3iyd_F 558 VLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 (613)
T ss_dssp HHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTSCSSSCSSTTCC--
T ss_pred HHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhCcchhhHHHHHhcC
Confidence 99999998887888999999999999999999999999999999999999999874
No 3
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=100.00 E-value=1.1e-56 Score=530.73 Aligned_cols=329 Identities=39% Similarity=0.629 Sum_probs=277.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHhhhcccchhhhhccccCCCCCCcc----h-hccC----C
Q psy15215 144 LLTRDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNFSSNN----R-VIKG----N 214 (1432)
Q Consensus 144 LLTREgEIeIAKRIE~G~~~v~~al~~~P~~v~~il~~~e~l~~ge~rl~dii~g~~d~~~~~~~----~-~~~~----~ 214 (1432)
||||||||+||||||+|+++|+++||.||++|.+||+|+++|.+|+++|+|||+||+||+.++.. . ..++ +
T Consensus 1 LLTREgEI~IAKRIE~G~~~v~~ai~~~P~~i~~il~~~~~l~~ge~rl~dii~g~~d~~~~~~~~~~~~~~~~~~~~~~ 80 (339)
T 1sig_A 1 GSHMEGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYNRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQED 80 (339)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTTTSSCGGGTEEEECC-----CCCCSCTTTTCCSCTTT
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHcCCccHHHHHhcccCCCcccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999998622110 0 0000 0
Q ss_pred -CCCChhhhhhhcCCCCCCHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcccCCHHHHH
Q psy15215 215 -KNNNEEKILIESSSADLSTEQLEKLKYESLIKFSNISFHFDKMRKAFEKEGYNSESYIKAHNNISNEMLGIRFTAKSIE 293 (1432)
Q Consensus 215 -~~~~e~~d~~~~~~~~~~~~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~g~~~~~~~k~~~~i~~~l~~ikl~~k~ie 293 (1432)
++++++++++++.+.. .......++.+.++|..|++.|+++++++.++|..++.+.+.+..|++.|++|+|+|++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ikl~~k~id 158 (339)
T 1sig_A 81 LDDDEDEDEEDGDDDSA--DDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFD 158 (339)
T ss_dssp TC----------------------CCHHHHHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHTTEEECHHHHH
T ss_pred ccccccccccccccccc--ccccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 0000000000000000 0000122566779999999999999999988888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhcCCCccchhhhhhHhhhcCchHHHHhhchHHHHHHHHHHHhh
Q psy15215 294 KLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKELQQKLINL 373 (1432)
Q Consensus 294 ~l~~~l~~~~~~ir~~Er~i~~~~v~~~gmpr~~fi~~f~~~e~~~~wl~~~~~~~~~~~~~L~~~~~~i~~~q~~L~~i 373 (1432)
+||+.|+..+++|+.+||.||++|++.+||||++|++.||||++|+.|++++++.+++|+..+.+..+.|..+|++|.++
T Consensus 159 ~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~mpr~~fi~~f~g~e~~~~w~~~~~~~~~~~~~~l~~~~~~i~~~q~kl~~i 238 (339)
T 1sig_A 159 YLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 238 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHTTTCSSGGGTHHHHTTCSHHHHHGGGTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcccccCcHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCChhhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHhhccccCCCcc
Q psy15215 374 QTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 453 (1432)
Q Consensus 374 E~~~~l~~~e~~~l~~~i~~gd~~~~~A~~~li~~~~~lV~~ia~ky~~~~~~~~DLiQEg~igL~kav~~fd~~~g~~F 453 (1432)
+..+++++.+...|+.+++.|+..+..|+..|+..|+++|+++|++|++++.+++||+||||||||+++++|++.+|++|
T Consensus 239 e~~~~l~~~~~~~l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f 318 (339)
T 1sig_A 239 EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 318 (339)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCH
T ss_pred HHHcCCChHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCH
Confidence 99999999999999999999999445599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q psy15215 454 STYATWWIRQAITRSIADQAR 474 (1432)
Q Consensus 454 stya~~~ir~~i~~~i~~~~r 474 (1432)
+||++|||+|+|++++++++|
T Consensus 319 ~twl~~iirn~~~~~lr~~~r 339 (339)
T 1sig_A 319 STYATWWIRQAITRSIADQAR 339 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999998764
No 4
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=100.00 E-value=1.6e-56 Score=529.32 Aligned_cols=329 Identities=39% Similarity=0.627 Sum_probs=277.7
Q ss_pred CCCchHHHHHHHHHHHhHHHHHHHHhhChHHHHHHHHHHHHhhhcccchhhhhccccCCCCCCch----h-hccC----C
Q psy15215 934 LLTRDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNFSSNN----R-VIKG----N 1004 (1432)
Q Consensus 934 LLTREgEIeIAKRIE~G~~~v~~al~~~P~~v~~il~~~e~l~~ge~~l~dii~g~~d~~~~~~~----~-~~~~----~ 1004 (1432)
||||||||+||||||+|+++|+.|||.||++|++||+|+++|.+|+++|+|||+||+||+.++.. + ..++ +
T Consensus 1 LLTREgEI~IAKRIE~G~~~v~~ai~~~P~~i~~il~~~~~l~~ge~rl~dii~g~~d~~~~~~~~~~~~~~~~~~~~~~ 80 (339)
T 1sig_A 1 GSHMEGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYNRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQED 80 (339)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTTTSSCGGGTEEEECC-----CCCCSCTTTTCCSCTTT
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHcCCccHHHHHhcccCCCcccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999998622110 0 0000 0
Q ss_pred CCCchhhhh-hhccCCCCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhccccCHHHHH
Q psy15215 1005 KNNNEEKIL-IESSSADLSTEQLEKLKYESLIKFSNISFHFDKMRKAFEKEGYNSESYIKAHNNISNEMLGIRFTAKSIE 1083 (1432)
Q Consensus 1005 ~~~e~~~d~-~~~~~~~~~~~~l~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~i~~~l~~irl~~k~i~ 1083 (1432)
+++++++++ +++.+.. .......++.+.++|..|++.|+++.+++.++|..++.+.+.+..|++.|++|+|+|++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ikl~~k~id 158 (339)
T 1sig_A 81 LDDDEDEDEEDGDDDSA--DDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFD 158 (339)
T ss_dssp TC----------------------CCHHHHHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHTTEEECHHHHH
T ss_pred ccccccccccccccccc--ccccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 000000000 0000000 0000112466779999999999999999988888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCccchhhHHHHhhhcCchhHHHhhchHHHHHHHHHHHHh
Q psy15215 1084 KLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKELQQKLINL 1163 (1432)
Q Consensus 1084 ~l~~~l~~~~~~ir~~Er~i~~~~~~~~~m~r~~fl~~f~~~e~~~~wl~~~~~~~~~~~~~L~~~~~~I~~~q~~L~~i 1163 (1432)
+||+.|+..+++|+.+||.|+++|++.+||||++|++.|+||++|+.|+.++++.+++|++.+.+..+.|..+|++|.++
T Consensus 159 ~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~mpr~~fi~~f~g~e~~~~w~~~~~~~~~~~~~~l~~~~~~i~~~q~kl~~i 238 (339)
T 1sig_A 159 YLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 238 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHTTTCSSGGGTHHHHTTCSHHHHHGGGTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcccccCcHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCChhhHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHhccccCCCcc
Q psy15215 1164 QTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 1243 (1432)
Q Consensus 1164 e~~~~l~~~e~~~l~~~~~~g~~~~~~A~~~Li~~~~~lV~~ia~~y~~~~~~~~DLiQEg~igl~kav~kfd~~~g~~F 1243 (1432)
+..+++++.+...|+.+++.|+..++.|+..||..|+++|+++|++|++++.+++||+||||+|||+++++|++.+|++|
T Consensus 239 e~~~~l~~~~~~~l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f 318 (339)
T 1sig_A 239 EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 318 (339)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCH
T ss_pred HHHcCCChHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCH
Confidence 99999999999999999999999555699999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcc
Q psy15215 1244 STYATWWIRQAITRSIADQAR 1264 (1432)
Q Consensus 1244 stya~~~ir~~i~~~i~~~~r 1264 (1432)
+||++||+||+|++++|++++
T Consensus 319 ~twl~~iirn~~~~~lr~~~r 339 (339)
T 1sig_A 319 STYATWWIRQAITRSIADQAR 339 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999998763
No 5
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=7.5e-56 Score=533.70 Aligned_cols=413 Identities=44% Similarity=0.661 Sum_probs=274.1
Q ss_pred HHHHHHHHHhccccCccchHHHhhhCCCCCCCHHHHHHHH---HH-HHhcCccccccccchhhhhccCCCCCchhHHHHH
Q psy15215 830 RKKFKILIKLGKERGYLTFSEINDFLPEDIIDHEIIESII---KT-FRYMDISVSEHVLDTETLMLSNITSDDDVEEATE 905 (1432)
Q Consensus 830 ~~~~~~Li~~gk~~g~lT~~ei~~~lp~~~~~~e~ie~i~---~~-l~~~gI~v~e~~~~~e~~~~~~~~~de~~~e~~~ 905 (1432)
.+.++.|+..||++||+||+|||++ | .+++++++.++ .. |.++||+|++..++++ . ++ ++
T Consensus 4 ~~~~~~l~~~~k~~g~lt~~ei~~~-~--~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~-~--------~~--~~-- 67 (423)
T 2a6h_F 4 SKRKNAQAQEAQETEVLVQEEAEEL-P--EFPEGEPDPDLEDPDLALEDDLLDLPEEGEGLD-L--------EE--EE-- 67 (423)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhcCCCCHHHHhcc-c--cCChhhhhHHHHHHHhhhccCCCcccCCCcccc-c--------hh--hh--
Confidence 4568889999999999999999999 6 57999999999 99 9999999987543321 0 00 11
Q ss_pred hhhccCCCCCCCCCChHHHHHHccCCccCCCchHHHHHHHHHHHhHHHHHHHHhhChHHHHHHHHHHHHhhhcccchhhh
Q psy15215 906 AALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEI 985 (1432)
Q Consensus 906 ~~~~~~~~~~grt~DPVRmYLREMG~v~LLTREgEIeIAKRIE~G~~~v~~al~~~P~~v~~il~~~e~l~~ge~~l~di 985 (1432)
+.. ..+.+.++|||+|||+|||++||||+|+|+++|+||+.|..... .+. . .
T Consensus 68 -~~~--~~~~~~~~d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~------------~l~--~-----------~ 119 (423)
T 2a6h_F 68 -EDL--PIPKISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIK------------KLS--E-----------I 119 (423)
T ss_dssp ---------CCTTHHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHH------------HHH--H-----------H
T ss_pred -hcc--cccccCCCcHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHH------------HHH--H-----------h
Confidence 111 11235688999999999999999999999999999999974211 000 0 0
Q ss_pred hccccCCCCCCchhhccCCCCCchhhhhhhccCCCCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy15215 986 VDGLIDKNFSSNNRVIKGNKNNNEEKILIESSSADLSTEQLEKLKYESLIKFSNISFHFDKMRKAFEKEGYNSESYIKAH 1065 (1432)
Q Consensus 986 i~g~~d~~~~~~~~~~~~~~~~e~~~d~~~~~~~~~~~~~l~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~k~~ 1065 (1432)
.. ..+.. +.. +.......
T Consensus 120 ~~---------------------------------~~~~~--------~~~----------~~~~~~~~----------- 137 (423)
T 2a6h_F 120 TG---------------------------------LDPDL--------IRE----------VVRAKILG----------- 137 (423)
T ss_dssp HC---------------------------------CCHHH--------HHH----------HHHHHHHC-----------
T ss_pred hc---------------------------------cchhh--------hhh----------hHhhhhhh-----------
Confidence 00 00000 000 00000000
Q ss_pred HHHHHHhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCccchhhHHHHhhhcCchhHH
Q psy15215 1066 NNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLI 1145 (1432)
Q Consensus 1066 ~~i~~~l~~irl~~k~i~~l~~~l~~~~~~ir~~Er~i~~~~~~~~~m~r~~fl~~f~~~e~~~~wl~~~~~~~~~~~~~ 1145 (1432)
..++ ..-|+ ...|.....
T Consensus 138 ----------------------------------~~~~----------------~~~~~---~~~~~~~~~--------- 155 (423)
T 2a6h_F 138 ----------------------------------SARV----------------RHIPG---LKETLDPKT--------- 155 (423)
T ss_dssp ----------------------------------CHHH----------------HHTTS---CSSSCTTHH---------
T ss_pred ----------------------------------hhhc----------------ccccc---hhhhhhhhh---------
Confidence 0000 00111 112222100
Q ss_pred HhhchHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHH
Q psy15215 1146 LCRNIPSIKELQQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGN 1225 (1432)
Q Consensus 1146 L~~~~~~I~~~q~~L~~ie~~~~l~~~e~~~l~~~~~~g~~~~~~A~~~Li~~~~~lV~~ia~~y~~~~~~~~DLiQEg~ 1225 (1432)
.......+.. .+ .....|+..++.| .. |++.||.+|+++|++||++|+++|.+++|||||||
T Consensus 156 -------~~~~~~~~~~----~~---~~~~~L~~~~~~d-~~---A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~ 217 (423)
T 2a6h_F 156 -------VEEIDQKLKS----LP---KEHKRYLHIAREG-EA---ARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGN 217 (423)
T ss_dssp -------HHHHHHHHHH----SC---HHHHHHHHHHHHH-HH---HHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHH
T ss_pred -------hhhhhhhhhc----cc---ccHHHHHHHHhcC-HH---HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 0001111111 11 1344566666654 44 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcC-
Q psy15215 1226 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKME- 1304 (1432)
Q Consensus 1226 igl~kav~kfd~~~g~~Fstya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~~~~~~~~~~~~g~~pt~~eia~~~~- 1304 (1432)
+|||+|+++|+|.+|++|+|||+||||++|.+++++++|++|+|+|+.+.++++++..+++.+.+||+||+++||+.+|
T Consensus 218 igL~kav~kFd~~~g~~FstYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~ 297 (423)
T 2a6h_F 218 QGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGP 297 (423)
T ss_dssp HHHHHHHHHCCTTSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCT
T ss_pred HHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCHHHHHHHHHHccCCCCCCCCCCCCCCCCcCcccccCCCCChHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcccC
Q psy15215 1305 -MPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEM 1383 (1432)
Q Consensus 1305 -~~~~~v~~~~~~~~~~~Sl~~~~~~~~~~~~~d~i~d~~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~ 1383 (1432)
+++++|..+++....++|++.|+++++++.+.+++++....+|++.+....+...|..+|++||+++|.||.||||++.
T Consensus 298 ~~~~~~v~~~~~~~~~~~Sld~~~~~~~~~~l~d~l~d~~~~~pe~~~~~~~~~~~L~~aL~~L~~rer~Vl~lr~~L~~ 377 (423)
T 2a6h_F 298 GWDAKRVEETLKIAQEPVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLID 377 (423)
T ss_dssp TCCHHHHHHHHHHHSCCEESSCBCSSSSSCBGGGSSCCSSSCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhccCCcccccccCCCCccchhhhhccccCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccCC
Confidence 9999999999999999999999998888888999988777789999998899999999999999999999999999877
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhh-CchhhhhHHhhhc
Q psy15215 1384 SSDHTLEEVGKQFDVTRERIRQIEAKALRKLR-HPSRYYKLKIFLE 1428 (1432)
Q Consensus 1384 ~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr-~~~~~~~l~~~~~ 1428 (1432)
+.++|++|||+.||||++||||++++|++||| ++.++..|++|++
T Consensus 378 ~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR~~~~~~~~l~~~l~ 423 (423)
T 2a6h_F 378 GREHTLEEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRDFLD 423 (423)
T ss_dssp C-----CHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHTTSSSSCCC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhhhhhhHHHHHhhC
Confidence 78889999999999999999999999999999 9999999999974
No 6
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=1.6e-54 Score=522.12 Aligned_cols=404 Identities=43% Similarity=0.637 Sum_probs=265.3
Q ss_pred HHHHHHHHHhccccCcccHHHHHhhCCCCCCCHHHHHHHH---HH-HhhCCCcccccCCchhhhhccCCCCCchhhHHHH
Q psy15215 40 RKKFKILIKLGKERGYLTFSEINDFLPEDIIDHEIIESII---KT-FRYMDISVSEHVLDTETLMLSNITSDDDVEEATE 115 (1432)
Q Consensus 40 ~~~l~~Li~~Gke~G~lTy~EInd~LP~~~~~~d~id~ii---~~-L~~~gI~v~d~~~~~~~~~~~~~~~de~~~~~~~ 115 (1432)
++.++.||++||++|||||+|||++ | .+++|++|.++ .+ |.++||+|++..++.+ . + + ++
T Consensus 4 ~~~~~~l~~~~k~~g~lt~~ei~~~-~--~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~-~-------~-~--~~-- 67 (423)
T 2a6h_F 4 SKRKNAQAQEAQETEVLVQEEAEEL-P--EFPEGEPDPDLEDPDLALEDDLLDLPEEGEGLD-L-------E-E--EE-- 67 (423)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhcCCCCHHHHhcc-c--cCChhhhhHHHHHHHhhhccCCCcccCCCcccc-c-------h-h--hh--
Confidence 4579999999999999999999999 6 47999999999 99 9999999997643311 0 0 0 11
Q ss_pred hhhccCCCCCCCCCChHHHHHHhcCCccCCCchHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHhhhcccchhhh
Q psy15215 116 AALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEI 195 (1432)
Q Consensus 116 ~~l~~~~~~~grt~DPVRmYLREMG~V~LLTREgEIeIAKRIE~G~~~v~~al~~~P~~v~~il~~~e~l~~ge~rl~di 195 (1432)
+.. ..+.+.++|||+|||+|||++||||+|+|+++|+||+.|..... .+. ..
T Consensus 68 -~~~--~~~~~~~~d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~------------~l~-------------~~ 119 (423)
T 2a6h_F 68 -EDL--PIPKISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIK------------KLS-------------EI 119 (423)
T ss_dssp ---------CCTTHHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHH------------HHH-------------HH
T ss_pred -hcc--cccccCCCcHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHH------------HHH-------------Hh
Confidence 111 11235688999999999999999999999999999999963211 000 00
Q ss_pred hccccCCCCCCcchhccCCCCCChhhhhhhcCCCCCCHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q psy15215 196 VDGLIDKNFSSNNRVIKGNKNNNEEKILIESSSADLSTEQLEKLKYESLIKFSNISFHFDKMRKAFEKEGYNSESYIKAH 275 (1432)
Q Consensus 196 i~g~~d~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~g~~~~~~~k~~ 275 (1432)
.. ..+.. ... +.+....
T Consensus 120 ~~---------------------------------~~~~~--------~~~----------~~~~~~~------------ 136 (423)
T 2a6h_F 120 TG---------------------------------LDPDL--------IRE----------VVRAKIL------------ 136 (423)
T ss_dssp HC---------------------------------CCHHH--------HHH----------HHHHHHH------------
T ss_pred hc---------------------------------cchhh--------hhh----------hHhhhhh------------
Confidence 00 00000 000 0000000
Q ss_pred HHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhcCCCccchhhhhhHhhhcCchHHH
Q psy15215 276 NNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLI 355 (1432)
Q Consensus 276 ~~i~~~l~~ikl~~k~ie~l~~~l~~~~~~ir~~Er~i~~~~v~~~gmpr~~fi~~f~~~e~~~~wl~~~~~~~~~~~~~ 355 (1432)
....+ ..-|+ ...|...... ..|..
T Consensus 137 ---------------------------------~~~~~----------------~~~~~---~~~~~~~~~~--~~~~~- 161 (423)
T 2a6h_F 137 ---------------------------------GSARV----------------RHIPG---LKETLDPKTV--EEIDQ- 161 (423)
T ss_dssp ---------------------------------CCHHH----------------HHTTS---CSSSCTTHHH--HHHHH-
T ss_pred ---------------------------------hhhhc----------------ccccc---hhhhhhhhhh--hhhhh-
Confidence 00000 00111 1123321100 00111
Q ss_pred HhhchHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHH
Q psy15215 356 LCRNIPSIKELQQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGN 435 (1432)
Q Consensus 356 L~~~~~~i~~~q~~L~~iE~~~~l~~~e~~~l~~~i~~gd~~~~~A~~~li~~~~~lV~~ia~ky~~~~~~~~DLiQEg~ 435 (1432)
.+.. . ......|+..++.| .. |++.||.+|+++|+++|++|+++|.+++|||||||
T Consensus 162 -------------~~~~----~---~~~~~~L~~~~~~d-~~---A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~ 217 (423)
T 2a6h_F 162 -------------KLKS----L---PKEHKRYLHIAREG-EA---ARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGN 217 (423)
T ss_dssp -------------HHHH----S---CHHHHHHHHHHHHH-HH---HHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHH
T ss_pred -------------hhhc----c---cccHHHHHHHHhcC-HH---HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 1111 1 12345567777654 55 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcC-
Q psy15215 436 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKME- 514 (1432)
Q Consensus 436 igL~kav~~fd~~~g~~Fstya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~- 514 (1432)
||||+|+++|+|.+|++|+|||+|||||+|.++|++++|++|+|+|+.+.+++++++.+++.+.+|++|++++||+.+|
T Consensus 218 igL~kav~kFd~~~g~~FstYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~ 297 (423)
T 2a6h_F 218 QGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGP 297 (423)
T ss_dssp HHHHHHHHHCCTTSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCT
T ss_pred HHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCHHHHHHHHHHccCCCCCCCCCCCCCCCCcCcccccCCCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccc
Q psy15215 515 -MPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEM 593 (1432)
Q Consensus 515 -~~~~~v~~~~~~~~~~~sl~~~~~~~~~~~~~~~i~d~~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~ 593 (1432)
+++++|..+++.+..++|++.|+++++++.+.+++++....+|++.+....+...|..+|++||+++|.||.||||++.
T Consensus 298 ~~~~~~v~~~~~~~~~~~Sld~~~~~~~~~~l~d~l~d~~~~~pe~~~~~~~~~~~L~~aL~~L~~rer~Vl~lr~~L~~ 377 (423)
T 2a6h_F 298 GWDAKRVEETLKIAQEPVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLID 377 (423)
T ss_dssp TCCHHHHHHHHHHHSCCEESSCBCSSSSSCBGGGSSCCSSSCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhccCCcccccccCCCCccchhhhhccccCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccCC
Confidence 9999999999999999999999988877888999988777789999998899999999999999999999999999877
Q ss_pred CCCCcHHHHHhhcccchhHHHHHHHHHHHHHH-HHHH
Q psy15215 594 SSDHTLEEVGKQFDVTRERIRQIEAKALRKLR-PLAH 629 (1432)
Q Consensus 594 ~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr-~~l~ 629 (1432)
+.++|++|||+.||+|+++|++++++|+++|| +++.
T Consensus 378 ~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR~~~~~ 414 (423)
T 2a6h_F 378 GREHTLEEVGAFFGVTRERIRQIENKALRKLKYHESR 414 (423)
T ss_dssp C-----CHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhhhhh
Confidence 78889999999999999999999999999999 5543
No 7
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=1.8e-47 Score=456.00 Aligned_cols=251 Identities=58% Similarity=0.882 Sum_probs=235.4
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHhccccCCCcchhHHHHHHHH
Q psy15215 1174 LRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 1253 (1432)
Q Consensus 1174 ~~~l~~~~~~g~~~~~~A~~~Li~~~~~lV~~ia~~y~~~~~~~~DLiQEg~igl~kav~kfd~~~g~~Fstya~~~ir~ 1253 (1432)
...|+..++ ++.. |++.||.+|+++|++||++|.++|.+++|||||||+|||+|+++||+.+|++|+|||+|||||
T Consensus 185 ~~eLi~~~~-~d~~---A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rFsTYA~~wIR~ 260 (438)
T 1l9z_H 185 LKRYLHIAR-EGEA---ARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQ 260 (438)
T ss_pred HHHHHHHHh-cCHH---HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCChHHHHHHHHHH
Confidence 344555554 3455 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcC--CCHHHHHHHHHHccCCCCCCCCCCCCC
Q psy15215 1254 AITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKME--MPEEKIRKIMKIAKEPVSMESPVGDDE 1331 (1432)
Q Consensus 1254 ~i~~~i~~~~r~irip~~~~~~~~k~~~~~~~~~~~~g~~pt~~eia~~~~--~~~~~v~~~~~~~~~~~Sl~~~~~~~~ 1331 (1432)
+|.+++++++|++|+|+|+.+.++++++..+++.+.+||+||.++||+.+| +++++|..+++....++|++.|+++++
T Consensus 261 ~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~SLd~~~~~d~ 340 (438)
T 1l9z_H 261 AINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIGDEK 340 (438)
T ss_pred HHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999998887
Q ss_pred CCCcCcccccCCCCChHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1332 DSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1332 ~~~~~d~i~d~~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
+..+.+++++....+|++.+....+...|..+|++||+++|.||.||||++.+.++|++|||+.||||++||||+++||+
T Consensus 341 d~~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAl 420 (438)
T 1l9z_H 341 DSFYGDFIPDENLPSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKAL 420 (438)
T ss_pred chhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 77888888887777899999888999999999999999999999999997777788999999999999999999999999
Q ss_pred HHhh-CchhhhhHHhhhc
Q psy15215 1412 RKLR-HPSRYYKLKIFLE 1428 (1432)
Q Consensus 1412 ~kLr-~~~~~~~l~~~~~ 1428 (1432)
+||| ++.++..|++|++
T Consensus 421 kKLR~~~~~~~~l~~yl~ 438 (438)
T 1l9z_H 421 RKLKYHESRTRKLRDFLE 438 (438)
T ss_pred HHHHHhHhhHHHHHHhhC
Confidence 9999 9999999999984
No 8
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=1.9e-44 Score=429.86 Aligned_cols=242 Identities=57% Similarity=0.872 Sum_probs=225.8
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHhhccccCCCccHHHHHHHHHH
Q psy15215 384 LRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 463 (1432)
Q Consensus 384 ~~~l~~~i~~gd~~~~~A~~~li~~~~~lV~~ia~ky~~~~~~~~DLiQEg~igL~kav~~fd~~~g~~Fstya~~~ir~ 463 (1432)
...|+..++ |+.. |++.||.+|+++|++||++|.++|.+++|||||||||||+|+++|++.+|++|+|||+|||||
T Consensus 185 ~~eLi~~~~-~d~~---A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rFsTYA~~wIR~ 260 (438)
T 1l9z_H 185 LKRYLHIAR-EGEA---ARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQ 260 (438)
T ss_pred HHHHHHHHh-cCHH---HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCChHHHHHHHHHH
Confidence 345566664 4455 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcC--CCHHHHHHHHHHccCCCCCCCCCCCCC
Q psy15215 464 AITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKME--MPEEKIRKIMKIAKEPVSMESPVGDDE 541 (1432)
Q Consensus 464 ~i~~~i~~~~r~irip~~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~--~~~~~v~~~~~~~~~~~sl~~~~~~~~ 541 (1432)
+|.++|++++|++|+|+|+.+.+++++++.+++.+.+|++|+.++||+.+| +++++|..+++.+..++|++.|+++++
T Consensus 261 ~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~SLd~~~~~d~ 340 (438)
T 1l9z_H 261 AINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIGDEK 340 (438)
T ss_pred HHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999998877
Q ss_pred CCCcCcccccCCCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHH
Q psy15215 542 DSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 621 (1432)
Q Consensus 542 ~~~~~~~i~d~~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl 621 (1432)
+..+.+++++....+|++.+....+...|..+|++||+++|.||.||||++.+.++|++|||+.||||+++|++++++|+
T Consensus 341 d~~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAl 420 (438)
T 1l9z_H 341 DSFYGDFIPDENLPSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKAL 420 (438)
T ss_pred chhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 77788888887667899999888999999999999999999999999997777788999999999999999999999999
Q ss_pred HHHH-HHHH
Q psy15215 622 RKLR-PLAH 629 (1432)
Q Consensus 622 ~kLr-~~l~ 629 (1432)
++|| +.+.
T Consensus 421 kKLR~~~~~ 429 (438)
T 1l9z_H 421 RKLKYHESR 429 (438)
T ss_pred HHHHHhHhh
Confidence 9999 5543
No 9
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=100.00 E-value=2.5e-39 Score=372.63 Aligned_cols=193 Identities=27% Similarity=0.401 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh---hhhhH-hhcC--CCcccccccccCCCCCchhhHHHHHHH---------------
Q psy15215 616 IEAKALRKLRPLAHDWLEQRTHQ---NEKII-ACSS--DSSNHNEHVTNNNFPPGFNIFHKLLRI--------------- 674 (1432)
Q Consensus 616 ~~~rAl~kLr~~l~~~~~~~l~~---~~~~~-~l~~--l~~~~~~~f~~Gyap~~~~~l~~~~~~--------------- 674 (1432)
.++..+..+.+.+..||+++|.. +..|+ ||+. ||+++|++|+|||||.+|+.|.+++..
T Consensus 3 ~~~~~l~~~~~~a~~~y~~~L~~~~~g~~a~~YL~~Rgl~~e~i~~f~lGyap~~~~~l~~~l~~~g~~~~~l~~~GL~~ 82 (329)
T 4edg_A 3 ADDLQMIEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDIELAYEAGLLS 82 (329)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSTTHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHHHTTCCHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHcCCCHHHHHhCCeeeccCcHHHHHHHHHHCCCCHHHHHHCCCeE
Confidence 34567888889999999999854 34567 9877 999999999999999999999887641
Q ss_pred ---HH-Hhhhcc--EEEEee-----eeeeeeeeeeCCCCC----CCCCCCcccCccccCchHhHHhhccCCeEEEEecch
Q psy15215 675 ---LQ-EYLESF--LISFFL-----RNHGISGFLLTTPDP----VHETPLFHKSNELYGLFEAKNAIGKSGYVLITEGYM 739 (1432)
Q Consensus 675 ---~~-~~~~~f--ri~fpi-----r~igf~gR~~~~~~~----s~et~~f~K~~~Ly~~~~a~~~~~~~~~~~~vEG~~ 739 (1432)
.. .+++|| |||||| +||||+||.++++.| ||||++|+|+++|||+|.|+++|++.+.+|||||||
T Consensus 83 ~~~~g~~~yd~Fr~Ri~fPI~d~~G~vigF~gR~l~~~~pKYlNspet~~f~K~~~Lygl~~a~~~i~~~~~vivvEG~~ 162 (329)
T 4edg_A 83 RNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYTGQEPKYLNSPETPIFQKRKLLYNLDKARKSIRKLDEIVLLEGFM 162 (329)
T ss_dssp EETTTTEEEESCCSEEEEEEECTTSCEEEEEEECSSSCSSSEEECCCCSSCCTTTCCBTHHHHHHHHHHHTCEEEESCHH
T ss_pred ECCCCCccccccCCEEEEEEECCCCCEEEEEeEECCCCCCeEeCCCCcccccccchhccHHHHHHHhccCCcEEEEecHH
Confidence 11 345666 799999 699999999998777 999999999999999999999999999999999999
Q ss_pred hHHHHhhhCC---------------------CCCeEEEEecCcHHHHHHHHHHHHHhhhhcCCCceEEEecCCCCCCHHH
Q psy15215 740 DVIGLSQFGF---------------------FANSSYTCFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 798 (1432)
Q Consensus 740 D~ia~~~~g~---------------------~~~~i~~~~D~D~aG~~a~~~~~~~~~~~~~~~~~~~~~~lp~~~Dpde 798 (1432)
||||+||+|+ ++.+||+|||||.||++||.|+++.+...|.. ++|+.+|+|+||||
T Consensus 163 Dvial~q~Gi~naVA~lGTalt~~~~~~L~r~~~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~---v~v~~lP~gkDpdd 239 (329)
T 4edg_A 163 DVIKSDTAGLKNVVATMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQHLLQQGLN---VFVIQLPSGMDPDE 239 (329)
T ss_dssp HHHHHHHHTCCSEEECSSSCCCHHHHHHHHHHCSEEEECCCSSHHHHHHHHHHHHHHHHTTCE---EEECCCCTTCCHHH
T ss_pred HHHHHHHcCCCeEEECCccCCCHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHHhcCCe---EEEEECCCCCCHHH
Confidence 9999999999 36899999999999999999999999987765 99999999999999
Q ss_pred HHHHhChhhhhhc
Q psy15215 799 YIRKFGYKIFSKK 811 (1432)
Q Consensus 799 ~~~~~g~~~~~~~ 811 (1432)
|++++|+++|.+.
T Consensus 240 ~l~~~G~~~~~~~ 252 (329)
T 4edg_A 240 YIGKYGNDAFTTF 252 (329)
T ss_dssp HHHHHCHHHHHHH
T ss_pred HHHHhCHHHHHHH
Confidence 9999999999774
No 10
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=2.5e-38 Score=353.57 Aligned_cols=239 Identities=48% Similarity=0.740 Sum_probs=148.8
Q ss_pred CCCChHHHHHHccCCccCCCchHHHHHHHHHHHhHHHHHHHHhhChHHHHHHHHHHHHhhhcccchhhhhccccCCCCCC
Q psy15215 917 RTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNFSS 996 (1432)
Q Consensus 917 rt~DPVRmYLREMG~v~LLTREgEIeIAKRIE~G~~~v~~al~~~P~~v~~il~~~e~l~~ge~~l~dii~g~~d~~~~~ 996 (1432)
.|+|||||||||||.|||||+++||+||||||.|...+..++..+|.+...+++.++.+..|+.++.+ +.||....
T Consensus 4 ~~~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~g~~~~~--- 79 (245)
T 3ugo_A 4 MTSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQK-IPGLKEKP--- 79 (245)
T ss_dssp -CCHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCC-CTTCCCCC---
T ss_pred CCCCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcc-cccccccc---
Confidence 47999999999999999999999999999999999999999999999999999999999999999999 88886321
Q ss_pred chhhccCCCCCchhhhhhhccCCCCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhccc
Q psy15215 997 NNRVIKGNKNNNEEKILIESSSADLSTEQLEKLKYESLIKFSNISFHFDKMRKAFEKEGYNSESYIKAHNNISNEMLGIR 1076 (1432)
Q Consensus 997 ~~~~~~~~~~~e~~~d~~~~~~~~~~~~~l~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~i~~~l~~ir 1076 (1432)
++.. .
T Consensus 80 -------------------------~~~~-~------------------------------------------------- 84 (245)
T 3ugo_A 80 -------------------------DPKT-V------------------------------------------------- 84 (245)
T ss_dssp -------------------------CHHH-H-------------------------------------------------
T ss_pred -------------------------cchh-H-------------------------------------------------
Confidence 0000 0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCccchhhHHHHhhhcCchhHHHhhchHHHHHH
Q psy15215 1077 FTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKEL 1156 (1432)
Q Consensus 1077 l~~k~i~~l~~~l~~~~~~ir~~Er~i~~~~~~~~~m~r~~fl~~f~~~e~~~~wl~~~~~~~~~~~~~L~~~~~~I~~~ 1156 (1432)
.|.+...
T Consensus 85 -----------------------------------------------------~~~~~~~-------------------- 91 (245)
T 3ugo_A 85 -----------------------------------------------------EEVDGKL-------------------- 91 (245)
T ss_dssp -----------------------------------------------------HHHHHHH--------------------
T ss_pred -----------------------------------------------------HHHHHhh--------------------
Confidence 0000000
Q ss_pred HHHHHHhhhhcCCCh-hhHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHhc
Q psy15215 1157 QQKLINLQTDIVLPL-NDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKF 1235 (1432)
Q Consensus 1157 q~~L~~ie~~~~l~~-~e~~~l~~~~~~g~~~~~~A~~~Li~~~~~lV~~ia~~y~~~~~~~~DLiQEg~igl~kav~kf 1235 (1432)
++. .+...+.. +..|+.. |++.|++.|.++|+++|++|++++.+++||+||||+|||+|+++|
T Consensus 92 ------------~~~~~~~~~L~~-~~~~d~~---A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~f 155 (245)
T 3ugo_A 92 ------------KSLPKELKRYLH-IAREGEA---ARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKF 155 (245)
T ss_dssp ------------HTSCHHHHHHHH-HHHHHHH---HHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHC
T ss_pred ------------ccchHHHHHHHH-HHhCCHH---HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 000 00111222 2334445 999999999999999999999999999999999999999999999
Q ss_pred cccCCCcchhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcC--CCHHHHHHH
Q psy15215 1236 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKME--MPEEKIRKI 1313 (1432)
Q Consensus 1236 d~~~g~~Fstya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~~~~~~~~~~~~g~~pt~~eia~~~~--~~~~~v~~~ 1313 (1432)
|+.+|++|+||++||||++|.++++++.+.+|+|.++.+.++++.++.+.+.+.+|+.||.+|||+.|| +|+.+|+..
T Consensus 156 d~~~g~~F~tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~ 235 (245)
T 3ugo_A 156 EYKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEET 235 (245)
T ss_dssp CGGGCCCHHHHHHHHHHHHHHHHHHHHTC---------------------------------------------------
T ss_pred CcccCCcHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHccCCCCC
Q psy15215 1314 MKIAKEPVSM 1323 (1432)
Q Consensus 1314 ~~~~~~~~Sl 1323 (1432)
+..+..++||
T Consensus 236 l~~ar~~lsl 245 (245)
T 3ugo_A 236 LKIAQEPVSL 245 (245)
T ss_dssp ----------
T ss_pred HHHHhhccCC
Confidence 9999888886
No 11
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=3.5e-38 Score=352.31 Aligned_cols=240 Identities=47% Similarity=0.726 Sum_probs=149.2
Q ss_pred CCCChHHHHHHhcCCccCCCchHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHhhhcccchhhhhccccCCCCCC
Q psy15215 127 RTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNFSS 206 (1432)
Q Consensus 127 rt~DPVRmYLREMG~V~LLTREgEIeIAKRIE~G~~~v~~al~~~P~~v~~il~~~e~l~~ge~rl~dii~g~~d~~~~~ 206 (1432)
.|+|||||||||||.|||||+++||+||||||.|...+..++..+|.....+++.++.+..|+.++.+ ++||....
T Consensus 4 ~~~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~g~~~~~--- 79 (245)
T 3ugo_A 4 MTSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQK-IPGLKEKP--- 79 (245)
T ss_dssp -CCHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCC-CTTCCCCC---
T ss_pred CCCCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcc-cccccccc---
Confidence 47999999999999999999999999999999999999999999999999999999999999999999 88886321
Q ss_pred cchhccCCCCCChhhhhhhcCCCCCCHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhccc
Q psy15215 207 NNRVIKGNKNNNEEKILIESSSADLSTEQLEKLKYESLIKFSNISFHFDKMRKAFEKEGYNSESYIKAHNNISNEMLGIR 286 (1432)
Q Consensus 207 ~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~g~~~~~~~k~~~~i~~~l~~ik 286 (1432)
.+.. .
T Consensus 80 -------------------------~~~~-----~--------------------------------------------- 84 (245)
T 3ugo_A 80 -------------------------DPKT-----V--------------------------------------------- 84 (245)
T ss_dssp -------------------------CHHH-----H---------------------------------------------
T ss_pred -------------------------cchh-----H---------------------------------------------
Confidence 0100 0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhcCCCccchhhhhhHhhhcCchHHHHhhchHHHHHH
Q psy15215 287 FTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKEL 366 (1432)
Q Consensus 287 l~~k~ie~l~~~l~~~~~~ir~~Er~i~~~~v~~~gmpr~~fi~~f~~~e~~~~wl~~~~~~~~~~~~~L~~~~~~i~~~ 366 (1432)
.|.+... + .
T Consensus 85 -----------------------------------------------------~~~~~~~---------~--~------- 93 (245)
T 3ugo_A 85 -----------------------------------------------------EEVDGKL---------K--S------- 93 (245)
T ss_dssp -----------------------------------------------------HHHHHHH---------H--T-------
T ss_pred -----------------------------------------------------HHHHHhh---------c--c-------
Confidence 0000000 0 0
Q ss_pred HHHHHhhhhccCCChhhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHhhcc
Q psy15215 367 QQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFE 446 (1432)
Q Consensus 367 q~~L~~iE~~~~l~~~e~~~l~~~i~~gd~~~~~A~~~li~~~~~lV~~ia~ky~~~~~~~~DLiQEg~igL~kav~~fd 446 (1432)
...+...|. ++..|+.. |++.|+..|+++|+++|++|++++.+++||+||||+|||+|+++|+
T Consensus 94 -------------~~~~~~~L~-~~~~~d~~---A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd 156 (245)
T 3ugo_A 94 -------------LPKELKRYL-HIAREGEA---ARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFE 156 (245)
T ss_dssp -------------SCHHHHHHH-HHHHHHHH---HHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCC
T ss_pred -------------chHHHHHHH-HHHhCCHH---HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 000011122 23345556 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcC--CCHHHHHHHH
Q psy15215 447 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKME--MPEEKIRKIM 524 (1432)
Q Consensus 447 ~~~g~~Fstya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~--~~~~~v~~~~ 524 (1432)
+.+|++|+||++||||++|.++++++.+.+++|.++.+.++++.++.+.+.+.+|++||.+|||+.|| +|+.+|+..+
T Consensus 157 ~~~g~~F~tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l 236 (245)
T 3ugo_A 157 YKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETL 236 (245)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHHHHHTC----------------------------------------------------
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHccCCCCC
Q psy15215 525 KIAKEPVSM 533 (1432)
Q Consensus 525 ~~~~~~~sl 533 (1432)
..+..++||
T Consensus 237 ~~ar~~lsl 245 (245)
T 3ugo_A 237 KIAQEPVSL 245 (245)
T ss_dssp ---------
T ss_pred HHHhhccCC
Confidence 999888875
No 12
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=100.00 E-value=4.1e-37 Score=357.13 Aligned_cols=195 Identities=34% Similarity=0.561 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hhhhhH-hhcC--CCcccccccccCCCCCchhhHHHHHH---H--------------
Q psy15215 617 EAKALRKLRPLAHDWLEQRTH--QNEKII-ACSS--DSSNHNEHVTNNNFPPGFNIFHKLLR---I-------------- 674 (1432)
Q Consensus 617 ~~rAl~kLr~~l~~~~~~~l~--~~~~~~-~l~~--l~~~~~~~f~~Gyap~~~~~l~~~~~---~-------------- 674 (1432)
.+..+..+.+.+..||+.++. .+..++ ||+. ||+++|+.|+|||||.+|+.|.+++. .
T Consensus 17 ~~~~l~~~~~~a~~~y~~~L~~~~~~~a~~YL~~RGls~e~i~~f~lGyap~~~~~L~~~l~~~g~~~~~l~~~GL~~~~ 96 (338)
T 1dd9_A 17 QRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTN 96 (338)
T ss_dssp ---CHHHHHHHHHHHHHHHHTSGGGHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHCSSHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHcCCCHHHHHHcceeeccccHHHHHHHHHHcCCCHHHHHHCCCeeec
Confidence 345677788888999999987 466777 9877 99999999999999999999887763 1
Q ss_pred -HHHhhhcc--EEEEee-----eeeeeeeeeeCCCCC----CCCCCCcccCccccCchHhHHhhccCCeEEEEecchhHH
Q psy15215 675 -LQEYLESF--LISFFL-----RNHGISGFLLTTPDP----VHETPLFHKSNELYGLFEAKNAIGKSGYVLITEGYMDVI 742 (1432)
Q Consensus 675 -~~~~~~~f--ri~fpi-----r~igf~gR~~~~~~~----s~et~~f~K~~~Ly~~~~a~~~~~~~~~~~~vEG~~D~i 742 (1432)
...+++|| |||||| +||||+||.++++.| ||+|++|+|+..|||++.|++.+++.+.+||||||||||
T Consensus 97 ~~g~~yd~Fr~Ri~fPI~d~~G~vigf~gR~l~~~~pKYlnspet~if~K~~~Lygl~~A~~~i~~~~~viIvEG~~Dvl 176 (338)
T 1dd9_A 97 DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVV 176 (338)
T ss_dssp ---CEEESCCSEEEEEEECTTSCEEEEEEEESSSCSCSEEECCCCSSCCTTTCCBTHHHHHHTCSSCSCEEEESSHHHHH
T ss_pred CCCccccccCCEEEEEEECCCCcEEEEEEEeCCCCCCceecCCCCcccccCccccCccHHHHhhccCCeEEEEechHhHH
Confidence 11234555 699999 699999999987766 999999999999999999999999999999999999999
Q ss_pred HHhhhCC---------------------CCCeEEEEecCcHHHHHHHHHHHHHhhhhcCCCceEEEecCCCCCCHHHHHH
Q psy15215 743 GLSQFGF---------------------FANSSYTCFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 801 (1432)
Q Consensus 743 a~~~~g~---------------------~~~~i~~~~D~D~aG~~a~~~~~~~~~~~~~~~~~~~~~~lp~~~Dpde~~~ 801 (1432)
|+||+|+ ++.+||+|||||.||++||.|+++.+++....+..|+|+.+|+|+|||||++
T Consensus 177 sl~q~G~~~aVA~lGtalt~~~~~~L~r~~~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~lP~gkDpdd~l~ 256 (338)
T 1dd9_A 177 ALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 256 (338)
T ss_dssp HHHHTTCCCEEECCC-CCCHHHHHHHHHHCSEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEEECTTCCHHHHHH
T ss_pred HHHHcCCCcEEEeCccccCHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCChHHHHH
Confidence 9999999 3688999999999999999999998554434456699999999999999999
Q ss_pred HhChhhhhhc
Q psy15215 802 KFGYKIFSKK 811 (1432)
Q Consensus 802 ~~g~~~~~~~ 811 (1432)
++|.++|.+.
T Consensus 257 ~~G~~~~~~~ 266 (338)
T 1dd9_A 257 KEGKEAFEAR 266 (338)
T ss_dssp HHHHHHHHHH
T ss_pred HhcHHHHHHH
Confidence 9999999774
No 13
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=100.00 E-value=2.9e-33 Score=336.94 Aligned_cols=197 Identities=26% Similarity=0.478 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhH-hhcC--CCcccccccccCCCCCchhhHHHHHHHH-----------------HHhhh
Q psy15215 621 LRKLRPLAHDWLEQRTHQNEKII-ACSS--DSSNHNEHVTNNNFPPGFNIFHKLLRIL-----------------QEYLE 680 (1432)
Q Consensus 621 l~kLr~~l~~~~~~~l~~~~~~~-~l~~--l~~~~~~~f~~Gyap~~~~~l~~~~~~~-----------------~~~~~ 680 (1432)
+..+.+.+..||+..+..+..+. ||+. ||.++|+.|+|||+|. |+.|.+++... ..+++
T Consensus 105 l~~~~~~a~~~~~~~L~~~~~a~~YL~~RGi~~~~i~~f~lGyap~-~~~l~~~l~~~~~~~~~l~~~Gl~~~~~g~~~d 183 (407)
T 2au3_A 105 VYVALDRVCDFYRESLLKNREASEYVKSRGIDPKVARKFDLGYAPS-SEALVKVLKENDLLEAYLETKNLLSPTKGVYRD 183 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHTTCEECCC-HHHHHHHHHHHTCHHHHHTTTCEECSSTTCCEE
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHcCCCHHHHHHhCCCCCCc-hHHHHHHHHhcCCCHHHHHHCCceEecCCCccc
Confidence 44555667778888877777777 9977 9999999999999999 99998876421 11223
Q ss_pred cc--EEEEee-----eeeeeeee-eeCCCCC----CCCCCCcccCccccCchHhHHhhccCCeEEEEecchhHHHHhhhC
Q psy15215 681 SF--LISFFL-----RNHGISGF-LLTTPDP----VHETPLFHKSNELYGLFEAKNAIGKSGYVLITEGYMDVIGLSQFG 748 (1432)
Q Consensus 681 ~f--ri~fpi-----r~igf~gR-~~~~~~~----s~et~~f~K~~~Ly~~~~a~~~~~~~~~~~~vEG~~D~ia~~~~g 748 (1432)
+| |||||| +||||+|| .++++.| ||+|++|+|++.|||++.|++.+.+.+.+|||||||||||+||+|
T Consensus 184 ~f~~ri~fPi~d~~G~vigf~gRr~l~~~~pKylnspet~~f~k~~~lygl~~a~~~i~~~~~viivEG~~Dvlsl~q~G 263 (407)
T 2au3_A 184 LFLRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYINSPDSRVFKKGENLFGLYEAKEYIKEEGFAILVEGYFDLLRLFSEG 263 (407)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSCCSSCSEEECCCCSSCCGGGCEETHHHHHHHHHHHTCEEECSSHHHHHHHHHTT
T ss_pred ccCCeEEEEEECCCCCEEEEEEEEecCCCCCeeecCCCCCCCCCCccccChHHHHHHhccCCeEEEEechHhHHHHHHCC
Confidence 44 599999 69999999 8987666 999999999999999999999888889999999999999999999
Q ss_pred C---------------------CCCeEEEEecCcHHHHHHHHHHHHHhhhhcCCCceEEEecCCCCCCHHHHHHHhChhh
Q psy15215 749 F---------------------FANSSYTCFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKI 807 (1432)
Q Consensus 749 ~---------------------~~~~i~~~~D~D~aG~~a~~~~~~~~~~~~~~~~~~~~~~lp~~~Dpde~~~~~g~~~ 807 (1432)
+ ++.+||+|||||.||++||.|++..+...|.. ++|+.+|+|+|||||++++|.++
T Consensus 264 ~~n~VA~lGtalt~~~~~~L~r~~~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~---~~v~~lP~gkDpdd~l~~~g~~~ 340 (407)
T 2au3_A 264 IRNVVAPLGTALTQNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPLLLSAGVE---VYPVYLPEGYDPDEFIKEFGKEE 340 (407)
T ss_dssp CCSEEEESSSSCCHHHHHHHHTTCSEEEEECCSSHHHHHHHHHHHHHHHHTTCE---EEEECCCTTCCHHHHHHHHCHHH
T ss_pred CCcEEEcCcccCCHHHHHHHHhcCCeEEEEEcCCHHHHHHHHHHHHHHHhCCCe---EEEEECCCCCChHHHHHhcCHHH
Confidence 8 35899999999999999999999998877665 99999999999999999999999
Q ss_pred hhhc-----cccchhhccc
Q psy15215 808 FSKK-----NAFSFDIKSN 821 (1432)
Q Consensus 808 ~~~~-----~~~~f~~~~~ 821 (1432)
|.+. +.++|.+...
T Consensus 341 ~~~~l~~a~~~~~~~~~~~ 359 (407)
T 2au3_A 341 LRRLINSSGELFETLIKTA 359 (407)
T ss_dssp HHHHHHHCCCHHHHHHHHG
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 9774 4444444433
No 14
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.94 E-value=3e-27 Score=265.58 Aligned_cols=219 Identities=23% Similarity=0.317 Sum_probs=191.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcc---CCCCChhHHHHHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHhccccc
Q psy15215 1191 AKREMTEANLRLVISIAKKYT---DRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 1267 (1432)
Q Consensus 1191 A~~~Li~~~~~lV~~ia~~y~---~~~~~~~DLiQEg~igl~kav~kfd~~~g~~Fstya~~~ir~~i~~~i~~~~r~ir 1267 (1432)
|++.|+..|.++|+++|++|+ +++.+++||+||||++||+++++|++.+|.+|+||+++|+++.+.++++++.+
T Consensus 13 a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~~--- 89 (239)
T 1rp3_A 13 EREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLDF--- 89 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSST---
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcCc---
Confidence 899999999999999999998 67899999999999999999999999988899999999999999999998764
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHcc--CCCCCCCCCCCCCCCCcCcccccCCCC
Q psy15215 1268 IPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAK--EPVSMESPVGDDEDSHLGDFIEDENML 1345 (1432)
Q Consensus 1268 ip~~~~~~~~k~~~~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~--~~~Sl~~~~~~~~~~~~~d~i~d~~~~ 1345 (1432)
.|.+.....++++++...+.+..|+.|+.+++|+.+|++++.+..++.... ..+|++.+..++++.. .+. .+. ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~-~~~-~~~-~~ 166 (239)
T 1rp3_A 90 GSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDY-SEL-IPS-ST 166 (239)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-GGG-SC
T ss_pred cchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccccCCCccc-ccc-cCC-CC
Confidence 688888889999999999999999999999999999999999999876543 2345555433222222 233 222 34
Q ss_pred ChHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchh
Q psy15215 1346 APSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 1419 (1432)
Q Consensus 1346 ~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~ 1419 (1432)
+|++.+...+....|..+|++|||++|.||.|+|+.|+ |++|||+.||+|+++|++++++|+++||+...
T Consensus 167 ~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~~g~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~ 236 (239)
T 1rp3_A 167 NVEEEVIKRELTEKVKEAVSKLPEREKLVIQLIFYEEL----PAKEVAKILETSVSRVSQLKAKALERLREMLS 236 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTSCC----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 78888888888999999999999999999999998888 99999999999999999999999999998553
No 15
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.94 E-value=9.9e-28 Score=269.91 Aligned_cols=237 Identities=26% Similarity=0.417 Sum_probs=54.2
Q ss_pred hhhcCCChhhHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHhccccCCCcc
Q psy15215 1164 QTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 1243 (1432)
Q Consensus 1164 e~~~~l~~~e~~~l~~~~~~g~~~~~~A~~~Li~~~~~lV~~ia~~y~~~~~~~~DLiQEg~igl~kav~kfd~~~g~~F 1243 (1432)
+....|+..+...|+.++++|+.. |++.|+..|.++|+++|++|+++..+++||+||||++||+++++|++.+|.+|
T Consensus 5 ~~~~~~~~~~~~~l~~~~~~gd~~---a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f 81 (243)
T 1l0o_C 5 QGQSPIKDQEMKELIRRSQEGDQE---ARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKF 81 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCCHHHHHHHHHHHHcCCHH---HHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCH
Confidence 445567777888999999999988 99999999999999999999999999999999999999999999999988899
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHccCCCCC
Q psy15215 1244 STYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSM 1323 (1432)
Q Consensus 1244 stya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~~~~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~~~~Sl 1323 (1432)
+||+++|+++.+.++++++. .+++|.++.....+++++...+.+..|+.|+.++++..+|++++.+...+.....+.|+
T Consensus 82 ~~~l~~i~~~~~~d~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 160 (243)
T 1l0o_C 82 STYAVPMIIGEIQRFLRDDG-TVKVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSI 160 (243)
T ss_dssp ------------------CC-CCTTHHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHhcC-CccCcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCc
Confidence 99999999999999999988 78999999999999999999999999999999999999999999999999888788899
Q ss_pred CCCCCCCCC--CCcCcccccCCCCChHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHH
Q psy15215 1324 ESPVGDDED--SHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRE 1401 (1432)
Q Consensus 1324 ~~~~~~~~~--~~~~d~i~d~~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~ 1401 (1432)
+.|++++++ .++.+.+ |++.....+....|..+|++||+++|.||.|+|+.|+ |++|||+.||||++
T Consensus 161 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g~----s~~EIA~~lgis~~ 229 (243)
T 1l0o_C 161 HETVYENDGDPITLLDQI-------ADADEASWFDKIALKKAIEELDERERLIVYLRYYKDQ----TQSEVASRLGISQV 229 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCCcccchhhcc-------CcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC----CHHHHHHHHCcCHH
Confidence 888654432 2233322 2333444556778999999999999999999998888 99999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy15215 1402 RIRQIEAKALRKLR 1415 (1432)
Q Consensus 1402 ~Vrq~~~rAl~kLr 1415 (1432)
+|++++++|+++||
T Consensus 230 tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 230 QMSRLEKKILQHIK 243 (243)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999997
No 16
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.94 E-value=2.9e-26 Score=257.50 Aligned_cols=220 Identities=23% Similarity=0.326 Sum_probs=191.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcc---cCCCChhhHHHHHHHHHHHHHhhccccCCCccHHHHHHHHHHHHHHHHHHhccccc
Q psy15215 401 AKREMTEANLRLVISIAKKYT---DRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 477 (1432)
Q Consensus 401 A~~~li~~~~~lV~~ia~ky~---~~~~~~~DLiQEg~igL~kav~~fd~~~g~~Fstya~~~ir~~i~~~i~~~~r~ir 477 (1432)
|++.|+..|.++|+++|++|+ +.+.+++||+|||+++||+++++|++.+|.+|+||+++|+++.+.++++++.+
T Consensus 13 a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~~--- 89 (239)
T 1rp3_A 13 EREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLDF--- 89 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSST---
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcCc---
Confidence 899999999999999999998 67899999999999999999999999988899999999999999999998764
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHcc--CCCCCCCCCCCCCCCCcCcccccCCCC
Q psy15215 478 IPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAK--EPVSMESPVGDDEDSHLGDFIEDENML 555 (1432)
Q Consensus 478 ip~~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~--~~~sl~~~~~~~~~~~~~~~i~d~~~~ 555 (1432)
.|.+.....+++.++...+.+..|+.|+.+++|..+|++++.+..++.... ..+|++.+..++++.. .+. ++. ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~-~~~-~~~-~~ 166 (239)
T 1rp3_A 90 GSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDY-SEL-IPS-ST 166 (239)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-GGG-SC
T ss_pred cchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccccCCCccc-ccc-cCC-CC
Confidence 688888889999999999999999999999999999999999999876543 2345554432222112 233 222 35
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q psy15215 556 APSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLAHD 630 (1432)
Q Consensus 556 ~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~~l~~ 630 (1432)
+|++.+...+....|..+|++||++++.||.|+|+.|+ |++|||+.||+|+++|+++.++|+++|++.+..
T Consensus 167 ~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~~g~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~~ 237 (239)
T 1rp3_A 167 NVEEEVIKRELTEKVKEAVSKLPEREKLVIQLIFYEEL----PAKEVAKILETSVSRVSQLKAKALERLREMLSN 237 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTSCC----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 78888888888999999999999999999999998888 999999999999999999999999999988753
No 17
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.93 E-value=7.4e-27 Score=262.79 Aligned_cols=238 Identities=26% Similarity=0.419 Sum_probs=54.1
Q ss_pred hhhccCCChhhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHhhccccCCCc
Q psy15215 373 LQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 452 (1432)
Q Consensus 373 iE~~~~l~~~e~~~l~~~i~~gd~~~~~A~~~li~~~~~lV~~ia~ky~~~~~~~~DLiQEg~igL~kav~~fd~~~g~~ 452 (1432)
++....|+..+...|+.+++.||.. |++.|+..|.++|+++|++|+++..+++||+|||+++||+++++|++.+|.+
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~gd~~---a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~ 80 (243)
T 1l0o_C 4 MQGQSPIKDQEMKELIRRSQEGDQE---ARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVK 80 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCCHHHHHHHHHHHHcCCHH---HHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 3455677888889999999999988 9999999999999999999999999999999999999999999999988889
Q ss_pred cHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHccCCCC
Q psy15215 453 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVS 532 (1432)
Q Consensus 453 Fstya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~~~~s 532 (1432)
|+||+++|++|.+.++++++. .+++|.++.....+++++...+.+..|+.|+.++++..+|++++.+...+.....+.|
T Consensus 81 f~~~l~~i~~~~~~d~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (243)
T 1l0o_C 81 FSTYAVPMIIGEIQRFLRDDG-TVKVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTS 159 (243)
T ss_dssp -------------------CC-CCTTHHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CccCcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccC
Confidence 999999999999999999987 7899999999999999999999999999999999999999999999999888878888
Q ss_pred CCCCCCCCCC--CCcCcccccCCCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccch
Q psy15215 533 MESPVGDDED--SHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTR 610 (1432)
Q Consensus 533 l~~~~~~~~~--~~~~~~i~d~~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~ 610 (1432)
++.|++++++ .++.+.+ |.+.....+....|..+|++||++++.||.|+|+.|+ |++|||+.||+|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g~----s~~EIA~~lgis~ 228 (243)
T 1l0o_C 160 IHETVYENDGDPITLLDQI-------ADADEASWFDKIALKKAIEELDERERLIVYLRYYKDQ----TQSEVASRLGISQ 228 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCCcccchhhcc-------CcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC----CHHHHHHHHCcCH
Confidence 9887654332 2233332 2233444556778999999999999999999998888 9999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy15215 611 ERIRQIEAKALRKLR 625 (1432)
Q Consensus 611 ~~v~~~~~rAl~kLr 625 (1432)
++|+++.++|+++||
T Consensus 229 ~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 229 VQMSRLEKKILQHIK 243 (243)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999986
No 18
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.80 E-value=3.6e-20 Score=199.23 Aligned_cols=170 Identities=13% Similarity=0.031 Sum_probs=147.1
Q ss_pred hHHHHHHH-HHhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHhccccCCCcchhHHHHHH
Q psy15215 1173 DLRDINRK-MIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 1251 (1432)
Q Consensus 1173 e~~~l~~~-~~~g~~~~~~A~~~Li~~~~~lV~~ia~~y~~~~~~~~DLiQEg~igl~kav~kfd~~~g~~Fstya~~~i 1251 (1432)
....|+.+ ++.|+.. |++.|+..|.+.|+++|++++++..+++|++||+|+.+|+++++|++..| +|.+|++.++
T Consensus 12 ~~~~li~~~~~~gd~~---a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~ 87 (184)
T 2q1z_A 12 DWVALMRAIRDHRDEA---AFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIA 87 (184)
T ss_dssp CHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHH
Confidence 35578888 8999988 99999999999999999999999999999999999999999999998775 8999999999
Q ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCCCCC
Q psy15215 1252 RQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDE 1331 (1432)
Q Consensus 1252 r~~i~~~i~~~~r~irip~~~~~~~~k~~~~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~~~~Sl~~~~~~~~ 1331 (1432)
+|.+.+++|++.+... ++ ++
T Consensus 88 ~n~~~d~~R~~~~~~~-------------------------------------------------------~~----~~- 107 (184)
T 2q1z_A 88 RNRRIDGLRKDRQPEP-------------------------------------------------------ED----LF- 107 (184)
T ss_dssp HTSCCTTTCSSSCCCC-------------------------------------------------------CC----CC-
T ss_pred HHHHHHHHHhhccccc-------------------------------------------------------cc----cc-
Confidence 9999999987654210 00 00
Q ss_pred CCCcCcccccCCCCChHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1332 DSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1332 ~~~~~d~i~d~~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
. .. ....+|++.....+....+..+|..||+++|.||.|+|+.|+ |++|||+.||+|+++|++++++|+
T Consensus 108 -~-----~~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g~----s~~eIA~~lgis~~tV~~~l~ra~ 176 (184)
T 2q1z_A 108 -W-----GP-DSEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFFGDL----THRELAAETGLPLGTIKSRIRLAL 176 (184)
T ss_dssp -C-----CS-SCCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSCC----SSCCSTTTCCCCCHHHHHHHHHHH
T ss_pred -c-----cC-CCCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 0 01 112468888888888889999999999999999999999888 999999999999999999999999
Q ss_pred HHhhCc
Q psy15215 1412 RKLRHP 1417 (1432)
Q Consensus 1412 ~kLr~~ 1417 (1432)
++||+.
T Consensus 177 ~~Lr~~ 182 (184)
T 2q1z_A 177 DRLRQH 182 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
No 19
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.80 E-value=1.4e-19 Score=196.29 Aligned_cols=179 Identities=18% Similarity=0.216 Sum_probs=140.1
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHhccccCCCcchhHHHHHHHH
Q psy15215 1174 LRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 1253 (1432)
Q Consensus 1174 ~~~l~~~~~~g~~~~~~A~~~Li~~~~~lV~~ia~~y~~~~~~~~DLiQEg~igl~kav~kfd~~~g~~Fstya~~~ir~ 1253 (1432)
...|+.+++.|+.. |++.|+..|.+.|+++|++|++ ..+++|++||+|+++|+++++|++.. .|.+|++.+++|
T Consensus 10 ~~~l~~~~~~gd~~---a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n 83 (194)
T 1or7_A 10 DQVLVERVQKGDQK---AFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVN 83 (194)
T ss_dssp HHHHHHHHHTTCHH---HHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHH
T ss_pred hHHHHHHHHccCHH---HHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHH
Confidence 45788999999988 9999999999999999999999 89999999999999999999999864 599999999999
Q ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCCCCCCC
Q psy15215 1254 AITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDS 1333 (1432)
Q Consensus 1254 ~i~~~i~~~~r~irip~~~~~~~~k~~~~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~~~~Sl~~~~~~~~~~ 1333 (1432)
.+.+++|++.+..+.. . +.. . . ...++.+
T Consensus 84 ~~~d~~R~~~~~~~~~----~------------------------~~~-----------~---~--~~~~~~~------- 112 (194)
T 1or7_A 84 TAKNYLVAQGRRPPSS----D------------------------VDA-----------I---E--AENFESG------- 112 (194)
T ss_dssp HHHHHHHHHTTCCTHH----H------------------------HHH-----------H---H--HHSCCSS-------
T ss_pred HHHHHHHHHhccCccc----c------------------------ccc-----------c---c--ccccccc-------
Confidence 9999999887632110 0 000 0 0 0001100
Q ss_pred CcCcccccCCCCChHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy15215 1334 HLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRK 1413 (1432)
Q Consensus 1334 ~~~d~i~d~~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~k 1413 (1432)
+.+.+ ..+|++.+...+....+..+|..||+++|.||.|+|+.|+ |++|||+.||+|+++|+++++||+++
T Consensus 113 ---~~~~~--~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~~g~----s~~EIA~~lgis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 113 ---GALKE--ISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGL----SYEEIAAIMDCPVGTVRSRIFRAREA 183 (194)
T ss_dssp ---CC----------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCC----CHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ---ccccC--CCChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHcCC----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 00011 0134333334456678889999999999999999999888 99999999999999999999999999
Q ss_pred hhCch
Q psy15215 1414 LRHPS 1418 (1432)
Q Consensus 1414 Lr~~~ 1418 (1432)
||+..
T Consensus 184 Lr~~l 188 (194)
T 1or7_A 184 IDNKV 188 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99844
No 20
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=99.79 E-value=6.8e-20 Score=207.36 Aligned_cols=145 Identities=15% Similarity=0.077 Sum_probs=116.0
Q ss_pred hhhhhH-hhcC--CCcccccccccCCCCCchhhHHHHHHHHHHhhhccEEEEee-----eeeeeeeeeeCCCCC-CCCCC
Q psy15215 638 QNEKII-ACSS--DSSNHNEHVTNNNFPPGFNIFHKLLRILQEYLESFLISFFL-----RNHGISGFLLTTPDP-VHETP 708 (1432)
Q Consensus 638 ~~~~~~-~l~~--l~~~~~~~f~~Gyap~~~~~l~~~~~~~~~~~~~fri~fpi-----r~igf~gR~~~~~~~-s~et~ 708 (1432)
+...+. ||.. ||.++|+.|++||+..+. ...||||| ++|||.+|.++ ..| -..|+
T Consensus 73 ~~~~~~~YL~~RGi~~~~i~~f~~~~~~~~g---------------~~~i~fp~~d~~G~vvg~~~R~~~-~~~Ky~~s~ 136 (255)
T 1nui_A 73 ESNGRYSALTARGISKETCQKAGYWIAKVDG---------------VMYQVADYRDQNGNIVSQKVRDKD-KNFKTTGSH 136 (255)
T ss_dssp GTTCBCCCBGGGTBCHHHHHHHTEEEEEETT---------------EEEEEEEEECTTSCEEEEEEECTT-CCCEEEECC
T ss_pred ccHHHHHHHHHcCCCHHHHHHhCeEEEccCC---------------cEEEEEEEECCCCCEEEEEEECCC-CCceEecCC
Confidence 344455 8877 999999999999974311 11389999 69999999953 333 11122
Q ss_pred CcccCccccCchHhHHhhccCCeEEEEecchhHHHHhhh-CC--------------------------CCCeEEEEecCc
Q psy15215 709 LFHKSNELYGLFEAKNAIGKSGYVLITEGYMDVIGLSQF-GF--------------------------FANSSYTCFDGD 761 (1432)
Q Consensus 709 ~f~K~~~Ly~~~~a~~~~~~~~~~~~vEG~~D~ia~~~~-g~--------------------------~~~~i~~~~D~D 761 (1432)
|+..|||++.++ +.+.+|||||||||||++|+ |+ ...+||+|||||
T Consensus 137 ---k~~~lyg~~~~~----~~~~v~i~EG~~Dals~~~~~g~~~~v~slg~~~~~~~~~l~~~~~~l~~~~~iil~~D~D 209 (255)
T 1nui_A 137 ---KSDALFGKHLWN----GGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQIILMFDMD 209 (255)
T ss_dssp ---CTTCCTTGGGCC----CBSCCEEESSHHHHHHHHHHHTTCSCEECCTTTTTTHHHHHHHTHHHHTTBSCEEEECCSS
T ss_pred ---CCccccCccccC----CCCEEEEEeCHHHHHHHHHhhCCCcEEEECCCccchhHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 888999999884 46789999999999999999 54 136899999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCceEEEecCCCCCCHHHHHHHhChhhhhhc
Q psy15215 762 QAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKK 811 (1432)
Q Consensus 762 ~aG~~a~~~~~~~~~~~~~~~~~~~~~~lp~~~Dpde~~~~~g~~~~~~~ 811 (1432)
.||++||.++...+.. + . |+++.+| ++|||||++++|.++|.+.
T Consensus 210 ~aG~~aa~~~~~~l~~-~-~---v~~~~~p-~kD~nd~l~~~g~~~~~~~ 253 (255)
T 1nui_A 210 EAGRKAVEEAAQVLPA-G-K---VRVAVLP-CKDANECHLNGHDREIMEQ 253 (255)
T ss_dssp HHHHHHHHHHHHHSCT-T-T---EEECCCS-SSSHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-C-C---EEEEeCC-CCCHHHHHHhcCHHHHHHH
Confidence 9999999999997753 3 3 8888899 9999999999999999764
No 21
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.78 E-value=8.6e-19 Score=190.06 Aligned_cols=183 Identities=18% Similarity=0.221 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHhhccccCCCccHHHHHHHHHH
Q psy15215 384 LRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 463 (1432)
Q Consensus 384 ~~~l~~~i~~gd~~~~~A~~~li~~~~~lV~~ia~ky~~~~~~~~DLiQEg~igL~kav~~fd~~~g~~Fstya~~~ir~ 463 (1432)
...|+.+++.||.. |+..|+..|.+.|+++|.+|++ ..+++|++||+++++|+++++|++.. +|.+|++.+++|
T Consensus 10 ~~~l~~~~~~gd~~---a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n 83 (194)
T 1or7_A 10 DQVLVERVQKGDQK---AFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVN 83 (194)
T ss_dssp HHHHHHHHHTTCHH---HHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHH
T ss_pred hHHHHHHHHccCHH---HHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHH
Confidence 56789999999998 9999999999999999999999 89999999999999999999999764 699999999999
Q ss_pred HHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCCCCCCC
Q psy15215 464 AITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDS 543 (1432)
Q Consensus 464 ~i~~~i~~~~r~irip~~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~~~~sl~~~~~~~~~~ 543 (1432)
.+.+++|++.+..+.. . .. +. ....++.+
T Consensus 84 ~~~d~~R~~~~~~~~~-~-~~-----------------------~~-------------------~~~~~~~~------- 112 (194)
T 1or7_A 84 TAKNYLVAQGRRPPSS-D-VD-----------------------AI-------------------EAENFESG------- 112 (194)
T ss_dssp HHHHHHHHHTTCCTHH-H-HH-----------------------HH-------------------HHHSCCSS-------
T ss_pred HHHHHHHHHhccCccc-c-cc-----------------------cc-------------------cccccccc-------
Confidence 9999999887632110 0 00 00 00001100
Q ss_pred CcCcccccCCCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHH
Q psy15215 544 HLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRK 623 (1432)
Q Consensus 544 ~~~~~i~d~~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~k 623 (1432)
+.+++ ..+|++.+...+....+..+|.+||++++.||.|+|+.|+ |++|||+.+|+|+++|+++.++|+++
T Consensus 113 ---~~~~~--~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~~g~----s~~EIA~~lgis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 113 ---GALKE--ISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGL----SYEEIAAIMDCPVGTVRSRIFRAREA 183 (194)
T ss_dssp ---CC----------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCC----CHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ---ccccC--CCChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHcCC----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 00011 0133333334456678899999999999999999998888 99999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy15215 624 LRPLAHDWL 632 (1432)
Q Consensus 624 Lr~~l~~~~ 632 (1432)
|++.+..++
T Consensus 184 Lr~~l~~~~ 192 (194)
T 1or7_A 184 IDNKVQPLI 192 (194)
T ss_dssp HHHHHCC--
T ss_pred HHHHHHHHh
Confidence 999886554
No 22
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.78 E-value=2.3e-19 Score=192.86 Aligned_cols=171 Identities=13% Similarity=0.024 Sum_probs=147.9
Q ss_pred hHHHHHHH-HHHhHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHhhccccCCCccHHHHHHHH
Q psy15215 383 DLRDINRK-MIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 461 (1432)
Q Consensus 383 e~~~l~~~-i~~gd~~~~~A~~~li~~~~~lV~~ia~ky~~~~~~~~DLiQEg~igL~kav~~fd~~~g~~Fstya~~~i 461 (1432)
....|+.+ ++.||.. |+..|+..|.+.|+++|.+++++..+++|++||+++.+|+++++|++..| +|.+|++.++
T Consensus 12 ~~~~li~~~~~~gd~~---a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~ 87 (184)
T 2q1z_A 12 DWVALMRAIRDHRDEA---AFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIA 87 (184)
T ss_dssp CHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHH
Confidence 45678889 9999998 99999999999999999999999899999999999999999999998765 8999999999
Q ss_pred HHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCCCCC
Q psy15215 462 RQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDE 541 (1432)
Q Consensus 462 r~~i~~~i~~~~r~irip~~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~~~~sl~~~~~~~~ 541 (1432)
+|.+.++++++.+...+ + ++
T Consensus 88 ~n~~~d~~R~~~~~~~~-------------------------------------------------------~----~~- 107 (184)
T 2q1z_A 88 RNRRIDGLRKDRQPEPE-------------------------------------------------------D----LF- 107 (184)
T ss_dssp HTSCCTTTCSSSCCCCC-------------------------------------------------------C----CC-
T ss_pred HHHHHHHHHhhcccccc-------------------------------------------------------c----cc-
Confidence 99999998876542110 0 00
Q ss_pred CCCcCcccccCCCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHH
Q psy15215 542 DSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 621 (1432)
Q Consensus 542 ~~~~~~~i~d~~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl 621 (1432)
. .. ....+|++.+...+....+..+|.+||++++.||.|+|..|+ |++|||+.+|+|+++|+++.++|+
T Consensus 108 -~-----~~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g~----s~~eIA~~lgis~~tV~~~l~ra~ 176 (184)
T 2q1z_A 108 -W-----GP-DSEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFFGDL----THRELAAETGLPLGTIKSRIRLAL 176 (184)
T ss_dssp -C-----CS-SCCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSCC----SSCCSTTTCCCCCHHHHHHHHHHH
T ss_pred -c-----cC-CCCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 0 00 122468888888888889999999999999999999999888 999999999999999999999999
Q ss_pred HHHHHHH
Q psy15215 622 RKLRPLA 628 (1432)
Q Consensus 622 ~kLr~~l 628 (1432)
++|++.+
T Consensus 177 ~~Lr~~l 183 (184)
T 2q1z_A 177 DRLRQHM 183 (184)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9999764
No 23
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.75 E-value=3.7e-18 Score=179.38 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=107.9
Q ss_pred CCChhHHHHHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHhCCC
Q psy15215 1214 GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSE 1293 (1432)
Q Consensus 1214 ~~~~~DLiQEg~igl~kav~kfd~~~g~~Fstya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~~~~~~~~~~~~g~~ 1293 (1432)
|.+++|++||||+++|+++.+|++.+ .+|+||++++++|.+.+++|++.+..+.|..
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~---------------------- 57 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLN---------------------- 57 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhH----------------------
Confidence 57899999999999999999999887 6899999999999999999998753332211
Q ss_pred CCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCCCCCCCCcC----cccccCCCCChHHHHHHHHHHHHHHHHHc-cCC
Q psy15215 1294 PDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLG----DFIEDENMLAPSDAALNASMRSVVKDILN-SLT 1368 (1432)
Q Consensus 1294 pt~~eia~~~~~~~~~v~~~~~~~~~~~Sl~~~~~~~~~~~~~----d~i~d~~~~~p~~~~~~~~~~~~l~~~L~-~L~ 1368 (1432)
.+++.+.+..++....+. +.+. ....+|++.+...+....+..+|. .||
T Consensus 58 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~~l~~~L~ 111 (164)
T 3mzy_A 58 -------------------------EALKTNAILEDSAYFDDEGHNINNYK-SSESNPEEAYLLKEEIEEFKKFSENNFS 111 (164)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHHHHHHHHSC
T ss_pred -------------------------HHhhhhhhhccCCCCCcccchhhhhc-ccCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence 112222222221111111 1111 223467788888888999999999 999
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhh
Q psy15215 1369 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYY 1421 (1432)
Q Consensus 1369 ~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~ 1421 (1432)
|++|.||. +|+.|+ |++|||+.||+|+++|+++++||+++||+.....
T Consensus 112 ~~~r~v~~-~~~~g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~~ 159 (164)
T 3mzy_A 112 KFEKEVLT-YLIRGY----SYREIATILSKNLKSIDNTIQRIRKKSEEWIKEE 159 (164)
T ss_dssp HHHHHHHH-HHTTTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHcCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999 788888 9999999999999999999999999999965543
No 24
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.74 E-value=4.6e-19 Score=220.94 Aligned_cols=141 Identities=16% Similarity=0.072 Sum_probs=117.1
Q ss_pred hhhhH-hhcC--CCcccccccccCCCCCchhhHHHHHHHHHHhhhccEEEEee-----eeeeeeeeeeCCCCC----CCC
Q psy15215 639 NEKII-ACSS--DSSNHNEHVTNNNFPPGFNIFHKLLRILQEYLESFLISFFL-----RNHGISGFLLTTPDP----VHE 706 (1432)
Q Consensus 639 ~~~~~-~l~~--l~~~~~~~f~~Gyap~~~~~l~~~~~~~~~~~~~fri~fpi-----r~igf~gR~~~~~~~----s~e 706 (1432)
...++ ||.. ||.++|++|++||+|... +.+||||| ++|||++|.. +..| ||
T Consensus 11 ~~~~~~YL~~Rgi~~~~~~~~~~~~~~~~g---------------~~~i~fp~~d~~G~~~g~~~R~~-~~~~ky~~~~- 73 (503)
T 1q57_A 11 SNGRYSALTARGISKETCQKAGYWIAKVDG---------------VMYQVADYRDQNGNIVSQKVRDK-DKNFKTTGSH- 73 (503)
T ss_dssp BCCBCCCBTTTTBCHHHHHHHTEEECCBTT---------------BCEEEEEEECTTSCEEEEEEEET-TTEEEEEECC-
T ss_pred hhHHHHHHHHCCCCHHHHHHcCeEEECCCC---------------cEEEEEEEECCCCCEEEEEeECC-CCCceEecCC-
Confidence 34456 8877 899999999999999521 12499999 5999999993 3333 44
Q ss_pred CCCcccCccccCchHhHHhhccCCeEEEEecchhHHHHhhh-CC--------------------------CCCeEEEEec
Q psy15215 707 TPLFHKSNELYGLFEAKNAIGKSGYVLITEGYMDVIGLSQF-GF--------------------------FANSSYTCFD 759 (1432)
Q Consensus 707 t~~f~K~~~Ly~~~~a~~~~~~~~~~~~vEG~~D~ia~~~~-g~--------------------------~~~~i~~~~D 759 (1432)
|+..|||++.++ +.+.+|||||||||||++|+ |+ ...+|++|||
T Consensus 74 -----k~~~lyg~~~~~----~~~~v~i~EG~~D~ls~~~~~g~~~~v~slg~~~~~~~~~l~~~l~~l~~~~~ivl~~D 144 (503)
T 1q57_A 74 -----KSDALFGKHLWN----GGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQIILMFD 144 (503)
T ss_dssp -----CTTCEETGGGCS----SEEEEEEESSHHHHHHHTTTTTTCSCEEEESSTTTTHHHHHHTTHHHHHTEEEEEEECC
T ss_pred -----CCCceECccccC----CCCEEEEECCHHHHHHHHHhcCCCcEEEECCcccchhHHHHHHHHHhhcCCCEEEEEeC
Confidence 788999999885 46789999999999999999 85 1358999999
Q ss_pred CcHHHHHHHHHHHHHhhhhcCCCceEEEecCCCCCCHHHHHHHhChhhhhhc
Q psy15215 760 GDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKK 811 (1432)
Q Consensus 760 ~D~aG~~a~~~~~~~~~~~~~~~~~~~~~~lp~~~Dpde~~~~~g~~~~~~~ 811 (1432)
||.||++|+.++...+... .|+++.+| ++|||||++++|.++|.+.
T Consensus 145 ~D~aG~~aa~~~~~~l~~~-----~~~~~~~p-~kD~nd~l~~~g~~~~~~~ 190 (503)
T 1q57_A 145 MDEAGRKAVEEAAQVLPAG-----KVRVAVLP-CKDANECHLNGHDREIMEQ 190 (503)
T ss_dssp SSHHHHHHHHHHHHHSCGG-----GEEECCCS-SSSHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccC-----cEEEEeCC-CCCHHHHHHhcCHHHHHHH
Confidence 9999999999999977643 38888899 9999999999999998764
No 25
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.72 E-value=2.4e-17 Score=173.14 Aligned_cols=153 Identities=18% Similarity=0.237 Sum_probs=108.1
Q ss_pred CCChhhHHHHHHHHHHHHHhhccccCCCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhCCC
Q psy15215 424 GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSE 503 (1432)
Q Consensus 424 ~~~~~DLiQEg~igL~kav~~fd~~~g~~Fstya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~~r~~~~~~~~~g~~ 503 (1432)
|.+++|++|||+++||+++.+|++.+ .+|+||++++++|.+.++++++.+..+.|..
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~---------------------- 57 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLN---------------------- 57 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhH----------------------
Confidence 57899999999999999999999877 6999999999999999999998754333211
Q ss_pred CCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCCCCCCCCcC----cccccCCCCChHHHHHHHHHHHHHHHHHh-cCC
Q psy15215 504 PDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLG----DFIEDENMLAPSDAALNASMRSVVKDILN-SLT 578 (1432)
Q Consensus 504 pt~~eia~~~~~~~~~v~~~~~~~~~~~sl~~~~~~~~~~~~~----~~i~d~~~~~p~~~~~~~~~~~~l~~~L~-~L~ 578 (1432)
.+++.+.+..++....+. +.+. ....+|++.+...+....+..+|. .||
T Consensus 58 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~~l~~~L~ 111 (164)
T 3mzy_A 58 -------------------------EALKTNAILEDSAYFDDEGHNINNYK-SSESNPEEAYLLKEEIEEFKKFSENNFS 111 (164)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHHHHHHHHSC
T ss_pred -------------------------HHhhhhhhhccCCCCCcccchhhhhc-ccCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence 111222221111111111 1111 123467888888888999999999 999
Q ss_pred HHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q psy15215 579 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLAHD 630 (1432)
Q Consensus 579 ~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~~l~~ 630 (1432)
++++.||. +|..|+ |++|||+.||+|+++|+++.++|+++|++.+..
T Consensus 112 ~~~r~v~~-~~~~g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 112 KFEKEVLT-YLIRGY----SYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp HHHHHHHH-HHTTTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHcCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 788888 999999999999999999999999999998864
No 26
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.56 E-value=2.1e-16 Score=165.33 Aligned_cols=143 Identities=14% Similarity=0.125 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHhcccccccc
Q psy15215 1191 AKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 1270 (1432)
Q Consensus 1191 A~~~Li~~~~~lV~~ia~~y~~~~~~~~DLiQEg~igl~kav~kfd~~~g~~Fstya~~~ir~~i~~~i~~~~r~irip~ 1270 (1432)
+|+.|+..|.+.|+++|.+++++..+++|++||+|+++|++.++|++.. .|.+|++.+++|.+.+++|+...
T Consensus 2 ~f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~~~------ 73 (157)
T 2lfw_A 2 SLGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADGEA------ 73 (157)
T ss_dssp TGGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTTSC------
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhccCc------
Confidence 4678999999999999999999999999999999999999999998753 69999999999999999875320
Q ss_pred cHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCCCCCCCCcCcccccCCCCChHHH
Q psy15215 1271 HMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDA 1350 (1432)
Q Consensus 1271 ~~~~~~~k~~~~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~~~~Sl~~~~~~~~~~~~~d~i~d~~~~~p~~~ 1350 (1432)
+ +.+. + ..
T Consensus 74 -----------------------~-----------------------------~~~~---e---------~~-------- 81 (157)
T 2lfw_A 74 -----------------------Q-----------------------------TSQS---D---------AE-------- 81 (157)
T ss_dssp -----------------------C-----------------------------CCCC---S---------CS--------
T ss_pred -----------------------c-----------------------------cCCc---c---------hH--------
Confidence 0 0000 0 00
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhh
Q psy15215 1351 ALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYY 1421 (1432)
Q Consensus 1351 ~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~ 1421 (1432)
+....+..+|..||+++|.||.|+|..|+ |++|||+.||+|.++|+++++||+++||......
T Consensus 82 ----~~~~~l~~~l~~Lp~~~r~vl~L~~~~g~----s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~ 144 (157)
T 2lfw_A 82 ----GTEAVARARLARMTPLSRQALLLTAMEGF----SPEDAAYLIEVDTSEVETLVTEALAEIEKQTRAL 144 (157)
T ss_dssp ----SSSSTTTTTTTTSCTTHHHHHTTTSSSCC----CHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCC
T ss_pred ----HHHHHHHHHHHhCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 00124566899999999999999999888 9999999999999999999999999999966543
No 27
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.47 E-value=8.1e-16 Score=160.81 Aligned_cols=140 Identities=14% Similarity=0.115 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHhhccccCCCccHHHHHHHHHHHHHHHHHHhccccccch
Q psy15215 401 AKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 480 (1432)
Q Consensus 401 A~~~li~~~~~lV~~ia~ky~~~~~~~~DLiQEg~igL~kav~~fd~~~g~~Fstya~~~ir~~i~~~i~~~~r~irip~ 480 (1432)
++..|+..|.+.|+++|.+++++..+++|++||+|+.+|++.++|++. .+|.+|++.+++|.+.+++|+...
T Consensus 2 ~f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~--~~~~~wl~~ia~n~~~d~~R~~~~------ 73 (157)
T 2lfw_A 2 SLGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRD--VDPRLGLYRMFQGIWASANADGEA------ 73 (157)
T ss_dssp TGGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCS--SCTTHHHHHHHHHHHHHHTTTTSC------
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCC--CcHHHHHHHHHHHHHHHHhhccCc------
Confidence 367899999999999999999998999999999999999999999875 379999999999999998875320
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCCCCCCCCcCcccccCCCCChHHH
Q psy15215 481 HMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDA 560 (1432)
Q Consensus 481 ~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~~~~sl~~~~~~~~~~~~~~~i~d~~~~~p~~~ 560 (1432)
+ +.+. + ..
T Consensus 74 -----------------------~-----------------------------~~~~---e---------~~-------- 81 (157)
T 2lfw_A 74 -----------------------Q-----------------------------TSQS---D---------AE-------- 81 (157)
T ss_dssp -----------------------C-----------------------------CCCC---S---------CS--------
T ss_pred -----------------------c-----------------------------cCCc---c---------hH--------
Confidence 0 0000 0 00
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q psy15215 561 ALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLA 628 (1432)
Q Consensus 561 ~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~~l 628 (1432)
+....+..+|.+||+++|.||.|+|..|+ |++|||+.+|+|.++|+++.++|+++|++.+
T Consensus 82 ----~~~~~l~~~l~~Lp~~~r~vl~L~~~~g~----s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 82 ----GTEAVARARLARMTPLSRQALLLTAMEGF----SPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp ----SSSSTTTTTTTTSCTTHHHHHTTTSSSCC----CHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred ----HHHHHHHHHHHhCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 00124667899999999999999999888 9999999999999999999999999998765
No 28
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.43 E-value=5.7e-14 Score=161.62 Aligned_cols=144 Identities=10% Similarity=-0.004 Sum_probs=119.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHh
Q psy15215 1183 AGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 1262 (1432)
Q Consensus 1183 ~g~~~~~~A~~~Li~~~~~lV~~ia~~y~~~~~~~~DLiQEg~igl~kav~kfd~~~g~~Fstya~~~ir~~i~~~i~~~ 1262 (1432)
+|+.. +|..|+..|.+.|+++|.+|+++..+++|++||+|+.+|+...+|++. .+|.||++.+++|.+.+++|+.
T Consensus 17 ~g~~~---~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~ 91 (286)
T 3n0r_A 17 RGSEM---HLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQL 91 (286)
T ss_dssp ---CC---CHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC--
T ss_pred CCCcC---CHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhcccc
Confidence 46666 999999999999999999999999999999999999999999999864 4799999999999998877632
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCCCCCCCCcCcccccC
Q psy15215 1263 ARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDE 1342 (1432)
Q Consensus 1263 ~r~irip~~~~~~~~k~~~~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~~~~Sl~~~~~~~~~~~~~d~i~d~ 1342 (1432)
.. + .....
T Consensus 92 ~~-------------------------------------------------------------~--~~~~~--------- 99 (286)
T 3n0r_A 92 EV-------------------------------------------------------------G--HDQGL--------- 99 (286)
T ss_dssp ---------------------------------------------------------------C--CCCCC---------
T ss_pred cc-------------------------------------------------------------C--CCccc---------
Confidence 10 0 00000
Q ss_pred CCCChHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchh
Q psy15215 1343 NMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 1419 (1432)
Q Consensus 1343 ~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~ 1419 (1432)
. ....+..+|++||+++|.||.|+|..|+ |++|||+.+|+|..+|+..+.+|+++|+....
T Consensus 100 ~------------~~~~l~~al~~Lp~~~R~v~~L~~~eg~----s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~ 160 (286)
T 3n0r_A 100 H------------AGDDAAQRLMRIAPRSRQAFLLTALEGF----TPTEAAQILDCDFGEVERLIGDAQAEIDAELA 160 (286)
T ss_dssp C------------TTSHHHHHHHHHSCHHHHHHHHHHTTCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred c------------hHHHHHHHHHhCCHHHeeEEEEEeeCCC----CHHHHHHHhCcCHHHHHHHHHHHHhhhhccCC
Confidence 0 0124788999999999999999999888 99999999999999999999999999998654
No 29
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=99.33 E-value=3.3e-12 Score=120.93 Aligned_cols=81 Identities=68% Similarity=0.934 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHHhhhc
Q psy15215 1349 DAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIFLE 1428 (1432)
Q Consensus 1349 ~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~~~~~ 1428 (1432)
+.+...++...|..+|+.|||++|.||.|||+.+.+.++|++|||+.||+|++||++++++|+++||+..++..|++|+.
T Consensus 2 ~~~~~~el~~~l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~~ 81 (99)
T 3t72_q 2 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGSS 81 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788899999999999999999999999776677899999999999999999999999999999999999999997
Q ss_pred c
Q psy15215 1429 G 1429 (1432)
Q Consensus 1429 ~ 1429 (1432)
.
T Consensus 82 ~ 82 (99)
T 3t72_q 82 G 82 (99)
T ss_pred h
Confidence 5
No 30
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.32 E-value=7.8e-13 Score=152.13 Aligned_cols=141 Identities=11% Similarity=0.006 Sum_probs=116.1
Q ss_pred HhHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHhhccccCCCccHHHHHHHHHHHHHHHHHHh
Q psy15215 393 AGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 472 (1432)
Q Consensus 393 ~gd~~~~~A~~~li~~~~~lV~~ia~ky~~~~~~~~DLiQEg~igL~kav~~fd~~~g~~Fstya~~~ir~~i~~~i~~~ 472 (1432)
+|+.. +|..|+..|.+.|+.+|.+|+++..+++|++||.|+.+|+...+|++. .+|.+|++.+++|.+.+++|+.
T Consensus 17 ~g~~~---~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~ 91 (286)
T 3n0r_A 17 RGSEM---HLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQL 91 (286)
T ss_dssp ---CC---CHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC--
T ss_pred CCCcC---CHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhcccc
Confidence 56666 999999999999999999999999999999999999999999999864 4799999999999998776531
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCCCCCCCCcCcccccC
Q psy15215 473 ARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDE 552 (1432)
Q Consensus 473 ~r~irip~~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~~~~sl~~~~~~~~~~~~~~~i~d~ 552 (1432)
.. + .....
T Consensus 92 ~~-------------------------------------------------------------~--~~~~~--------- 99 (286)
T 3n0r_A 92 EV-------------------------------------------------------------G--HDQGL--------- 99 (286)
T ss_dssp ---------------------------------------------------------------C--CCCCC---------
T ss_pred cc-------------------------------------------------------------C--CCccc---------
Confidence 10 0 00000
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHH
Q psy15215 553 NMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRP 626 (1432)
Q Consensus 553 ~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~ 626 (1432)
. ....+..+|++||+++|.||.|+|..|+ |++|||..+|+|.++|+.+..++...++.
T Consensus 100 ~------------~~~~l~~al~~Lp~~~R~v~~L~~~eg~----s~~EIA~~lgis~~tVks~l~rA~~~Lr~ 157 (286)
T 3n0r_A 100 H------------AGDDAAQRLMRIAPRSRQAFLLTALEGF----TPTEAAQILDCDFGEVERLIGDAQAEIDA 157 (286)
T ss_dssp C------------TTSHHHHHHHHHSCHHHHHHHHHHTTCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred c------------hHHHHHHHHHhCCHHHeeEEEEEeeCCC----CHHHHHHHhCcCHHHHHHHHHHHHhhhhc
Confidence 0 0124788999999999999999999998 99999999999999999999999887764
No 31
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=99.21 E-value=9.8e-12 Score=110.49 Aligned_cols=59 Identities=32% Similarity=0.654 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhccccCcccHHHHHhhCCCCC--CCHHHHHHHHHHHhhCCCcccccCCchh
Q psy15215 39 LRKKFKILIKLGKERGYLTFSEINDFLPEDI--IDHEIIESIIKTFRYMDISVSEHVLDTE 97 (1432)
Q Consensus 39 ~~~~l~~Li~~Gke~G~lTy~EInd~LP~~~--~~~d~id~ii~~L~~~gI~v~d~~~~~~ 97 (1432)
..+.++.||++||++|||||+|||++||++. ++++++|+++..|.++||+|++.+|+.+
T Consensus 7 ~~~~~k~Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI~Vvd~~~~~~ 67 (72)
T 2k6x_A 7 IERRIKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIVENEPEEE 67 (72)
T ss_dssp HHHHHHHHHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCCCCBCCSCCSC
T ss_pred HHHHHHHHHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCCccccCCcchh
Confidence 4567999999999999999999999999987 8999999999999999999998776543
No 32
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=99.02 E-value=5.5e-10 Score=103.91 Aligned_cols=72 Identities=58% Similarity=0.838 Sum_probs=65.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHHhhhcc
Q psy15215 1358 SVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIFLEG 1429 (1432)
Q Consensus 1358 ~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~~~~~~ 1429 (1432)
..|..+|+.|||++|.||.++|+++.+.++|++|||+.+|+|++||++++++|+++||.......+++|+..
T Consensus 10 ~~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~~~~~~ 81 (87)
T 1tty_A 10 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 81 (87)
T ss_dssp SHHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 467889999999999999999985555566999999999999999999999999999999999999998864
No 33
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=98.99 E-value=4.6e-10 Score=99.23 Aligned_cols=66 Identities=77% Similarity=1.099 Sum_probs=59.8
Q ss_pred HHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHHhhhc
Q psy15215 1363 ILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIFLE 1428 (1432)
Q Consensus 1363 ~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~~~~~ 1428 (1432)
+|+.|||+++.||.++||.+...++|++|||+.+|+|+++|++++++|+++||...+...++.|++
T Consensus 2 ~l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 67 (68)
T 2p7v_B 2 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 67 (68)
T ss_dssp CSCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGGGGSCTTC
T ss_pred HHHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 468899999999999997644456699999999999999999999999999999999999998875
No 34
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=98.99 E-value=1.3e-09 Score=102.65 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=68.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhh
Q psy15215 1344 MLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYY 1421 (1432)
Q Consensus 1344 ~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~ 1421 (1432)
..+|.+.+...+....|..+|..||+++|.||.|+|+.|+ |++|||+.||+|.++|++++++|+++||+.....
T Consensus 15 ~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~ 88 (92)
T 3hug_A 15 EQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGW----STAQIATDLGIAEGTVKSRLHYAVRALRLTLQEL 88 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHTSCC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999999999999998888 9999999999999999999999999999866543
No 35
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=98.98 E-value=2.3e-10 Score=102.76 Aligned_cols=69 Identities=59% Similarity=0.816 Sum_probs=53.4
Q ss_pred HHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhh-CchhhhhHHhhhc
Q psy15215 1360 VKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR-HPSRYYKLKIFLE 1428 (1432)
Q Consensus 1360 l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr-~~~~~~~l~~~~~ 1428 (1432)
+..+|+.|||+++.||.++|+++.+.++|++|||+.+|+|+++|++++++|+++|| ++.+...|++|++
T Consensus 4 l~~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~~~~~~~~ 73 (73)
T 1ku3_A 4 LEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE 73 (73)
T ss_dssp CSSSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHHHHHHhhC
Confidence 45678999999999999999855445669999999999999999999999999999 9999888988863
No 36
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=98.97 E-value=1.6e-09 Score=102.46 Aligned_cols=72 Identities=68% Similarity=0.959 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q psy15215 559 DAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLAHD 630 (1432)
Q Consensus 559 ~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~~l~~ 630 (1432)
+.+...++...|..+|+.|||++|.||.|||+.+.+.++|++|||+.+|+|+++|+++.++|+++||+.+..
T Consensus 2 ~~~~~~el~~~l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~ 73 (99)
T 3t72_q 2 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 73 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999999999997766778999999999999999999999999999988753
No 37
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=98.86 E-value=9.8e-09 Score=96.55 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=68.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q psy15215 554 MLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLAHD 630 (1432)
Q Consensus 554 ~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~~l~~ 630 (1432)
..+|.+.+...+....|..+|.+||++++.||.|+|..|+ |++|||+.||+|..+|+++.++|+++|++.+..
T Consensus 15 ~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 87 (92)
T 3hug_A 15 EQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGW----STAQIATDLGIAEGTVKSRLHYAVRALRLTLQE 87 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHTSCC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999998888 999999999999999999999999999988754
No 38
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=98.80 E-value=5.5e-09 Score=102.14 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=75.9
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHhccccCCCcchhHHHHHHH
Q psy15215 1173 DLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 1252 (1432)
Q Consensus 1173 e~~~l~~~~~~g~~~~~~A~~~Li~~~~~lV~~ia~~y~~~~~~~~DLiQEg~igl~kav~kfd~~~g~~Fstya~~~ir 1252 (1432)
....|+..++.|+.. |++.|+..|.+.|+++|.++ ++..+++|++||+|+.+|+++.+|++. .+|.+|++.+++
T Consensus 10 ~~~~l~~~~~~gd~~---a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~ 83 (112)
T 2o7g_A 10 AVTALALSAAKGNGR---ALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIAR 83 (112)
T ss_dssp HHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHH
Confidence 355788899999888 99999999999999999999 888899999999999999999999864 379999999999
Q ss_pred HHHHHHHHHhccc
Q psy15215 1253 QAITRSIADQART 1265 (1432)
Q Consensus 1253 ~~i~~~i~~~~r~ 1265 (1432)
|.+.+++|++.+.
T Consensus 84 n~~~d~~R~~~~~ 96 (112)
T 2o7g_A 84 HVVADHIRHVRSR 96 (112)
T ss_dssp HHHHHHTC-----
T ss_pred HHHHHHHHHhhcc
Confidence 9999999987753
No 39
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=98.76 E-value=9.9e-09 Score=100.28 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHhhccccCCCccHHHHHHHHH
Q psy15215 383 DLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 462 (1432)
Q Consensus 383 e~~~l~~~i~~gd~~~~~A~~~li~~~~~lV~~ia~ky~~~~~~~~DLiQEg~igL~kav~~fd~~~g~~Fstya~~~ir 462 (1432)
+...|+..++.|+.. |+..|+..|.+.|+++|.++ +...+++|++||+++.+|+.+.+|++. .+|.+|++.+++
T Consensus 10 ~~~~l~~~~~~gd~~---a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~ 83 (112)
T 2o7g_A 10 AVTALALSAAKGNGR---ALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIAR 83 (112)
T ss_dssp HHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHH
Confidence 355789999999998 99999999999999999999 888899999999999999999999863 379999999999
Q ss_pred HHHHHHHHHhccc
Q psy15215 463 QAITRSIADQART 475 (1432)
Q Consensus 463 ~~i~~~i~~~~r~ 475 (1432)
|.+.+++|++.+.
T Consensus 84 n~~~d~~R~~~~~ 96 (112)
T 2o7g_A 84 HVVADHIRHVRSR 96 (112)
T ss_dssp HHHHHHTC-----
T ss_pred HHHHHHHHHhhcc
Confidence 9999999987663
No 40
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=98.74 E-value=7.9e-09 Score=91.76 Aligned_cols=59 Identities=32% Similarity=0.654 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhccccCccchHHHhhhCCCCC--CCHHHHHHHHHHHHhcCccccccccchh
Q psy15215 829 LRKKFKILIKLGKERGYLTFSEINDFLPEDI--IDHEIIESIIKTFRYMDISVSEHVLDTE 887 (1432)
Q Consensus 829 ~~~~~~~Li~~gk~~g~lT~~ei~~~lp~~~--~~~e~ie~i~~~l~~~gI~v~e~~~~~e 887 (1432)
+...++.|++.||++|||||++||++||+.. +++++++.++..|.++||+|++.+|+.+
T Consensus 7 ~~~~~k~Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI~Vvd~~~~~~ 67 (72)
T 2k6x_A 7 IERRIKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIVENEPEEE 67 (72)
T ss_dssp HHHHHHHHHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCCCCBCCSCCSC
T ss_pred HHHHHHHHHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCCccccCCcchh
Confidence 5667899999999999999999999999987 8999999999999999999998776543
No 41
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=98.70 E-value=8.5e-09 Score=95.81 Aligned_cols=80 Identities=15% Similarity=0.088 Sum_probs=70.1
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHH
Q psy15215 1180 KMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 1259 (1432)
Q Consensus 1180 ~~~~g~~~~~~A~~~Li~~~~~lV~~ia~~y~~~~~~~~DLiQEg~igl~kav~kfd~~~g~~Fstya~~~ir~~i~~~i 1259 (1432)
++..|+.. |+..|+..|.+.|+++|.+++++..+++|++||+|+.+|+..++|++. .+|.+|++.+++|.+.+++
T Consensus 5 ~~~~g~~~---af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~ 79 (87)
T 1h3l_A 5 ESTAERSA---RFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSY 79 (87)
T ss_dssp -CHHHHHH---HHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTC
T ss_pred ccCcccHH---HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHH
Confidence 45677777 999999999999999999999999999999999999999999999865 4799999999999999999
Q ss_pred HHhcc
Q psy15215 1260 ADQAR 1264 (1432)
Q Consensus 1260 ~~~~r 1264 (1432)
|++.+
T Consensus 80 R~~~~ 84 (87)
T 1h3l_A 80 RKKQR 84 (87)
T ss_dssp C----
T ss_pred HHhcc
Confidence 87654
No 42
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=98.64 E-value=4.3e-08 Score=86.87 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=54.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhh
Q psy15215 1355 SMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYK 1422 (1432)
Q Consensus 1355 ~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~ 1422 (1432)
+....+..+|+.|||+++.||.++|+.|+ |++|||+.+|+|+++|++++++|+++||.......
T Consensus 4 e~~~~l~~~l~~L~~~~r~il~l~~~~g~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~ 67 (70)
T 2o8x_A 4 EDLVEVTTMIADLTTDQREALLLTQLLGL----SYADAAAVCGCPVGTIRSRVARARDALLADAEPDD 67 (70)
T ss_dssp HHHHHHHTTTTSSCHHHHHHHHHHHTSCC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhccc
Confidence 34567889999999999999999998888 99999999999999999999999999999776543
No 43
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=98.63 E-value=1.8e-08 Score=93.50 Aligned_cols=80 Identities=15% Similarity=0.088 Sum_probs=70.3
Q ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHhhccccCCCccHHHHHHHHHHHHHHHH
Q psy15215 390 KMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 469 (1432)
Q Consensus 390 ~i~~gd~~~~~A~~~li~~~~~lV~~ia~ky~~~~~~~~DLiQEg~igL~kav~~fd~~~g~~Fstya~~~ir~~i~~~i 469 (1432)
++..|+.. |+..|+..|.+.|+++|.+++++..+++|++||+++.+|+..++|++. .+|.+|++.+++|.+.+++
T Consensus 5 ~~~~g~~~---af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~ 79 (87)
T 1h3l_A 5 ESTAERSA---RFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSY 79 (87)
T ss_dssp -CHHHHHH---HHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTC
T ss_pred ccCcccHH---HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHH
Confidence 45678888 999999999999999999999998999999999999999999999864 4799999999999999999
Q ss_pred HHhcc
Q psy15215 470 ADQAR 474 (1432)
Q Consensus 470 ~~~~r 474 (1432)
+++.+
T Consensus 80 R~~~~ 84 (87)
T 1h3l_A 80 RKKQR 84 (87)
T ss_dssp C----
T ss_pred HHhcc
Confidence 87654
No 44
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.60 E-value=1.1e-10 Score=132.30 Aligned_cols=162 Identities=13% Similarity=0.096 Sum_probs=119.9
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCChhHHH----HHHHHHHHHHHHhccccCCCcchhHHHHH
Q psy15215 1175 RDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLI----QEGNIGLMKAVDKFEYRRGYKFSTYATWW 1250 (1432)
Q Consensus 1175 ~~l~~~~~~g~~~~~~A~~~Li~~~~~lV~~ia~~y~~~~~~~~DLi----QEg~igl~kav~kfd~~~g~~Fstya~~~ 1250 (1432)
..++.++..+|.. ++..+...+.++++.+............|+. ||+|+.+|+....|++.. +|.+|++.+
T Consensus 85 ~~ll~~i~p~D~~---~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~i 159 (258)
T 3clo_A 85 DCIYRRIHPEDLV---EKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFC 159 (258)
T ss_dssp HHHHTTBCHHHHH---HHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEE
T ss_pred HHHHHhCChHHHH---HHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHH
Confidence 3466777666666 8999999999999999887766667778886 999999999999998654 799999888
Q ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCCCC
Q psy15215 1251 IRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDD 1330 (1432)
Q Consensus 1251 ir~~i~~~i~~~~r~irip~~~~~~~~k~~~~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~~~~Sl~~~~~~~ 1330 (1432)
+++.+.++.+.... ...+...
T Consensus 160 a~n~~~d~~r~~~~-----------------------------------------------------------~~~~~~~ 180 (258)
T 3clo_A 160 LYSLSADQRPEQGI-----------------------------------------------------------YATITQM 180 (258)
T ss_dssp EEEECSCCCCCSSC-----------------------------------------------------------CCEEEET
T ss_pred HHHHHcchhhhhHH-----------------------------------------------------------HHHHHhh
Confidence 77766554321100 0000000
Q ss_pred CCCCcCcccccCCCCChHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1331 EDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1331 ~~~~~~d~i~d~~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.. .+.... + .+..++..||+++|+||.|+ ..|+ |.+|||+.||+|.+||+.+++||
T Consensus 181 ~~---~~~~~~-----~-----------~~~~~~~~L~~~erevl~L~-~~G~----s~~EIA~~L~iS~~TVk~~l~ra 236 (258)
T 3clo_A 181 ER---GEVETL-----S-----------LSEEHRNILSEREKEILRCI-RKGL----SSKEIAATLYISVNTVNRHRQNI 236 (258)
T ss_dssp TT---TEEEEC-----C-----------CHHHHTTSSCHHHHHHHHHH-HTTC----CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cc---cccccc-----h-----------hhHHHHccCCHHHHHHHHHH-HcCC----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 00 000000 0 14567899999999999998 5777 99999999999999999999999
Q ss_pred HHHhhCchhhhhHH
Q psy15215 1411 LRKLRHPSRYYKLK 1424 (1432)
Q Consensus 1411 l~kLr~~~~~~~l~ 1424 (1432)
++|||...+.....
T Consensus 237 ~~kL~~~~~~~~~~ 250 (258)
T 3clo_A 237 LEKLSVGNSIEACR 250 (258)
T ss_dssp HHHTTCSSHHHHHH
T ss_pred HHHHcCCCHHHHHH
Confidence 99999988876544
No 45
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=98.54 E-value=1.1e-07 Score=88.28 Aligned_cols=61 Identities=57% Similarity=0.858 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q psy15215 568 SVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLA 628 (1432)
Q Consensus 568 ~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~~l 628 (1432)
..|..+|+.||++++.||.++|+++.+.++|++|||+.+|+|+++|+++.++|+++|+..+
T Consensus 10 ~~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 10 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp SHHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999965556669999999999999999999999999998765
No 46
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=98.49 E-value=1.1e-07 Score=91.77 Aligned_cols=62 Identities=26% Similarity=0.254 Sum_probs=52.5
Q ss_pred CchHhHHhhccC--CeEEEEecchhHHHHhhhCC--------------------CCCeEEEEecCcHHHHHHHHHHHHHh
Q psy15215 718 GLFEAKNAIGKS--GYVLITEGYMDVIGLSQFGF--------------------FANSSYTCFDGDQAGRRAARRALEVC 775 (1432)
Q Consensus 718 ~~~~a~~~~~~~--~~~~~vEG~~D~ia~~~~g~--------------------~~~~i~~~~D~D~aG~~a~~~~~~~~ 775 (1432)
.+.+.+..+++. +.+|||||++|+++|+++|+ +...|++|+|+|.||.+++.++.+.+
T Consensus 7 ~l~e~~~~l~~~s~~~vIvVEGk~D~~~L~~~g~~~iI~t~Gtal~~~i~~l~~~~~~VIIltD~D~aGe~ir~~i~~~l 86 (118)
T 1t6t_1 7 NLSEWIKELKKASREAVILVEGKNDKKALSKFSIKNVIDLSGKRYADVVDMLEGKWEKVILLFDLDTHGERINQKMKELL 86 (118)
T ss_dssp SHHHHHHHHHHHTTTSEEEESSHHHHHHHHTTTCCCEEECTTSCHHHHHHHHTTTCSEEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEEEChHHHHHHHHhCcCcEEEECCCcHHHHHHHHHhCCCEEEEEECCChhHHHHHHHHHHhc
Confidence 355667777766 88999999999999999998 33449999999999999999999988
Q ss_pred hhhc
Q psy15215 776 LLYA 779 (1432)
Q Consensus 776 ~~~~ 779 (1432)
...|
T Consensus 87 ~~~~ 90 (118)
T 1t6t_1 87 SSQG 90 (118)
T ss_dssp HHTT
T ss_pred CccC
Confidence 7644
No 47
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=98.49 E-value=5.9e-08 Score=86.88 Aligned_cols=59 Identities=56% Similarity=0.773 Sum_probs=52.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHH-HHH
Q psy15215 570 VKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR-PLA 628 (1432)
Q Consensus 570 l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr-~~l 628 (1432)
+..+|+.|||+++.||.++|+++.+.++|++|||+.+|+|+++|+++.++|+++|+ ..+
T Consensus 4 l~~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~ 63 (73)
T 1ku3_A 4 LEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHES 63 (73)
T ss_dssp CSSSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHh
Confidence 45678999999999999999855445669999999999999999999999999999 544
No 48
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.43 E-value=5e-07 Score=88.03 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHH-ccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhh
Q psy15215 1351 ALNASMRSVVKDIL-NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYK 1422 (1432)
Q Consensus 1351 ~~~~~~~~~l~~~L-~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~ 1422 (1432)
+........+..++ ..|||+++.|+.++|..|+ |++|||+.+|+|+++|+++++||+++||.......
T Consensus 9 ~e~~~~~~~l~~~l~~~L~~~~r~vl~l~~~~g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~ 77 (113)
T 1xsv_A 9 LVKTLRMNYLFDFYQSLLTNKQRNYLELFYLEDY----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLE 77 (113)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHTSCC----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445567788889 9999999999999998888 99999999999999999999999999998765544
No 49
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=98.40 E-value=1.9e-07 Score=82.27 Aligned_cols=56 Identities=79% Similarity=1.086 Sum_probs=49.6
Q ss_pred HHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q psy15215 573 ILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLA 628 (1432)
Q Consensus 573 ~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~~l 628 (1432)
+|+.|||+++.||.++||.+...++|++|||+.+|+|+++|+++.++|+++|+..+
T Consensus 2 ~l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 2 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CSCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred HHHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999765445669999999999999999999999999998654
No 50
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=3.8e-07 Score=80.70 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q psy15215 565 SMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLAH 629 (1432)
Q Consensus 565 ~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~~l~ 629 (1432)
+....+..+++.|||+++.||.++|..|+ |++|||+.+|+|+++|+++.++|+.+|+..+.
T Consensus 4 e~~~~l~~~l~~L~~~~r~il~l~~~~g~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~ 64 (70)
T 2o8x_A 4 EDLVEVTTMIADLTTDQREALLLTQLLGL----SYADAAAVCGCPVGTIRSRVARARDALLADAE 64 (70)
T ss_dssp HHHHHHHTTTTSSCHHHHHHHHHHHTSCC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 34567889999999999999999998888 99999999999999999999999999997764
No 51
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.28 E-value=2.3e-06 Score=83.31 Aligned_cols=67 Identities=13% Similarity=0.206 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHH-hcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHH
Q psy15215 561 ALNASMRSVVKDIL-NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLAHDW 631 (1432)
Q Consensus 561 ~~~~~~~~~l~~~L-~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~~l~~~ 631 (1432)
+........+..++ ..|||+++.||.|+|..|+ |++|||+.+|+|+++|+.+.++|+.+|+..+..+
T Consensus 9 ~e~~~~~~~l~~~l~~~L~~~~r~vl~l~~~~g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~ 76 (113)
T 1xsv_A 9 LVKTLRMNYLFDFYQSLLTNKQRNYLELFYLEDY----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKL 76 (113)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHTSCC----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567788889 9999999999999998888 9999999999999999999999999999988653
No 52
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.27 E-value=1.4e-06 Score=84.73 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=55.9
Q ss_pred HHHHHHHH-ccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhh
Q psy15215 1357 RSVVKDIL-NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYK 1422 (1432)
Q Consensus 1357 ~~~l~~~L-~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~ 1422 (1432)
...+..++ ..|||+++.|+.++|..|+ |++|||+.+|+|+++|++++++|+++||.......
T Consensus 12 ~~~l~~~l~~~L~~~~r~vl~l~y~~g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~ 74 (113)
T 1s7o_A 12 MNALFEFYAALLTDKQMNYIELYYADDY----SLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLH 74 (113)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHTCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667778 8999999999999999888 99999999999999999999999999998765544
No 53
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=98.26 E-value=5e-07 Score=84.56 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHH
Q psy15215 1353 NASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLK 1424 (1432)
Q Consensus 1353 ~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~ 1424 (1432)
.......+..++..||++|+.||.+ |..|+ |.+|||+.||+|..||+++++++++||+...+...+.
T Consensus 16 ~~~~~~~l~~~l~~Lt~~e~~vl~l-~~~g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~ 82 (91)
T 2rnj_A 16 RGSHMKKRAELYEMLTEREMEILLL-IAKGY----SNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVI 82 (91)
T ss_dssp ---------CTGGGCCSHHHHHHHH-HHTTC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHH-HHcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 3344667888999999999999999 56677 9999999999999999999999999999988776543
No 54
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.25 E-value=1.6e-09 Score=122.65 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=113.7
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCChhhHH----HHHHHHHHHHHhhccccCCCccHHHHHHH
Q psy15215 385 RDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLI----QEGNIGLMKAVDKFEYRRGYKFSTYATWW 460 (1432)
Q Consensus 385 ~~l~~~i~~gd~~~~~A~~~li~~~~~lV~~ia~ky~~~~~~~~DLi----QEg~igL~kav~~fd~~~g~~Fstya~~~ 460 (1432)
..++.++..+|.. ++..+...|.+++..+............|+. ||.++.+|+.+..|++.. +|.+|++..
T Consensus 85 ~~ll~~i~p~D~~---~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~i 159 (258)
T 3clo_A 85 DCIYRRIHPEDLV---EKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFC 159 (258)
T ss_dssp HHHHTTBCHHHHH---HHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEE
T ss_pred HHHHHhCChHHHH---HHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHH
Confidence 3466677667776 8999999999999999887766666788886 999999999999998643 688888887
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCCCC
Q psy15215 461 IRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDD 540 (1432)
Q Consensus 461 ir~~i~~~i~~~~r~irip~~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~~~~sl~~~~~~~ 540 (1432)
+++.+.++.+.... ...+...
T Consensus 160 a~n~~~d~~r~~~~-----------------------------------------------------------~~~~~~~ 180 (258)
T 3clo_A 160 LYSLSADQRPEQGI-----------------------------------------------------------YATITQM 180 (258)
T ss_dssp EEEECSCCCCCSSC-----------------------------------------------------------CCEEEET
T ss_pred HHHHHcchhhhhHH-----------------------------------------------------------HHHHHhh
Confidence 77666544221100 0000000
Q ss_pred CCCCcCcccccCCCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHH
Q psy15215 541 EDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 620 (1432)
Q Consensus 541 ~~~~~~~~i~d~~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rA 620 (1432)
.. ++... .+ .+..++..||+++++||.|+ ..|+ |.+|||+.||+|.++|+.+.++|
T Consensus 181 ~~---~~~~~-----~~-----------~~~~~~~~L~~~erevl~L~-~~G~----s~~EIA~~L~iS~~TVk~~l~ra 236 (258)
T 3clo_A 181 ER---GEVET-----LS-----------LSEEHRNILSEREKEILRCI-RKGL----SSKEIAATLYISVNTVNRHRQNI 236 (258)
T ss_dssp TT---TEEEE-----CC-----------CHHHHTTSSCHHHHHHHHHH-HTTC----CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cc---ccccc-----ch-----------hhHHHHccCCHHHHHHHHHH-HcCC----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 00 00000 00 14567899999999999998 5777 99999999999999999999999
Q ss_pred HHHHHHH
Q psy15215 621 LRKLRPL 627 (1432)
Q Consensus 621 l~kLr~~ 627 (1432)
+++|+..
T Consensus 237 ~~kL~~~ 243 (258)
T 3clo_A 237 LEKLSVG 243 (258)
T ss_dssp HHHTTCS
T ss_pred HHHHcCC
Confidence 9999864
No 55
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=98.21 E-value=2e-06 Score=78.02 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=56.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHHhh
Q psy15215 1358 SVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIF 1426 (1432)
Q Consensus 1358 ~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~~~ 1426 (1432)
..+..++..||++|+.|+.+ |..|+ |.+|||+.+|+|..+|+++..++++||+...+...+.-+
T Consensus 8 ~~l~~~l~~L~~~e~~vl~l-~~~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~~~~ 71 (79)
T 1x3u_A 8 NDIRARLQTLSERERQVLSA-VVAGL----PNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLVRMA 71 (79)
T ss_dssp HHHHHHHHHHCHHHHHHHHH-HTTTC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHH-HHcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 46778899999999999999 56777 999999999999999999999999999998887755433
No 56
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=98.20 E-value=1.6e-06 Score=81.76 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=48.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHH
Q psy15215 1355 SMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLK 1424 (1432)
Q Consensus 1355 ~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~ 1424 (1432)
+....+..++..||++|++||.++ ..|+ |++|||+.||+|..||+++++++++||+...+...+.
T Consensus 16 ~~~~~l~~~l~~Lt~~e~~vl~l~-~~g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~ 80 (95)
T 3c57_A 16 PRGSHMQDPLSGLTDQERTLLGLL-SEGL----TNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAV 80 (95)
T ss_dssp -----------CCCHHHHHHHHHH-HTTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC---
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH-HcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 335667889999999999999996 6777 9999999999999999999999999999988776543
No 57
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=98.16 E-value=2.1e-06 Score=78.54 Aligned_cols=60 Identities=22% Similarity=0.385 Sum_probs=52.7
Q ss_pred HHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHH
Q psy15215 1360 VKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLK 1424 (1432)
Q Consensus 1360 l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~ 1424 (1432)
+..++..||++|++||.+ |..|+ |.+|||+.||+|..+|+++++++++||+...+.....
T Consensus 15 ~~~~~~~Lt~~e~~vl~l-~~~g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~ 74 (82)
T 1je8_A 15 TERDVNQLTPRERDILKL-IAQGL----PNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAV 74 (82)
T ss_dssp --CCGGGSCHHHHHHHHH-HTTTC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHccCCHHHHHHHHH-HHcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 456789999999999999 56666 9999999999999999999999999999988877554
No 58
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=98.11 E-value=3.3e-06 Score=79.06 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHH-hcCCHHHHHHHHHHhhccc---CCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15215 561 ALNASMRSVVKDIL-NSLTPRESKVLRMRFGIEM---SSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLAHDWLEQRT 636 (1432)
Q Consensus 561 ~~~~~~~~~l~~~L-~~L~~rer~Vl~lr~~~~~---~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~~l~~~~~~~l 636 (1432)
+....-.+.+..++ .-|||+|+.+|.+||++.. +.++|+.|||+.+|+|+++|.+. +++|+++...+..|+.+.+
T Consensus 19 i~~~~~~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k~~l~~~l 97 (101)
T 1jhg_A 19 LKNAYQNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELRQWLEEVL 97 (101)
T ss_dssp HHHHHHTTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHHHHHHHHh
Confidence 33444456677778 5699999999999999863 34589999999999999999988 8999999999999999886
Q ss_pred h
Q psy15215 637 H 637 (1432)
Q Consensus 637 ~ 637 (1432)
.
T Consensus 98 ~ 98 (101)
T 1jhg_A 98 L 98 (101)
T ss_dssp S
T ss_pred c
Confidence 4
No 59
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.09 E-value=7.9e-06 Score=79.40 Aligned_cols=60 Identities=13% Similarity=0.279 Sum_probs=55.2
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q psy15215 567 RSVVKDIL-NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLAHD 630 (1432)
Q Consensus 567 ~~~l~~~L-~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~~l~~ 630 (1432)
...+..++ ..|||+++.|+.++|..|+ |++|||+.+|+|+++|+.+.++|+.+|+..+..
T Consensus 12 ~~~l~~~l~~~L~~~~r~vl~l~y~~g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 72 (113)
T 1s7o_A 12 MNALFEFYAALLTDKQMNYIELYYADDY----SLAEIADEFGVSRQAVYDNIKRTEKILETYEMK 72 (113)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHTCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778 8999999999999999888 999999999999999999999999999998865
No 60
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=98.06 E-value=3.6e-06 Score=78.78 Aligned_cols=68 Identities=21% Similarity=0.196 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHH-ccCCHHHHHHHHHHhcccC---CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchh
Q psy15215 1351 ALNASMRSVVKDIL-NSLTPRESKVLRMRFGIEM---SSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 1419 (1432)
Q Consensus 1351 ~~~~~~~~~l~~~L-~~L~~rer~Vl~lr~~~~~---~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~ 1419 (1432)
+......+.+...+ .-|||+|+.+|.+||+... +.++|+.|||+.+|+|+++|+.+ +|++++|.+..+
T Consensus 19 i~~~~~~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k 90 (101)
T 1jhg_A 19 LKNAYQNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELR 90 (101)
T ss_dssp HHHHHHTTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHH
T ss_pred HHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHH
Confidence 33344455666677 4699999999999999863 34589999999999999999999 999999988443
No 61
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=97.94 E-value=1.2e-05 Score=71.67 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=52.5
Q ss_pred HHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHHhh
Q psy15215 1360 VKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIF 1426 (1432)
Q Consensus 1360 l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~~~ 1426 (1432)
....+..||++|+.|+.+ |..|+ |.+|||+.+|+|+.+|++++.+++++|+...+...+...
T Consensus 5 ~~~~~~~L~~~e~~il~~-~~~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~~ 66 (74)
T 1fse_A 5 EFQSKPLLTKREREVFEL-LVQDK----TTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVEL 66 (74)
T ss_dssp ---CCCCCCHHHHHHHHH-HTTTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHH-HHcCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 345678899999999999 56666 999999999999999999999999999998887765543
No 62
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=97.86 E-value=6e-06 Score=77.16 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHH
Q psy15215 563 NASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRP 626 (1432)
Q Consensus 563 ~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~ 626 (1432)
.......+..++..||++|+.||.| |..|+ |++|||+.||+|..+|+.+.++++++|+.
T Consensus 16 ~~~~~~~l~~~l~~Lt~~e~~vl~l-~~~g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 16 RGSHMKKRAELYEMLTEREMEILLL-IAKGY----SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp ---------CTGGGCCSHHHHHHHH-HHTTC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHH-HHcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3344667888999999999999999 56666 99999999999999999999999999974
No 63
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=97.80 E-value=2.1e-05 Score=74.11 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHH
Q psy15215 565 SMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRP 626 (1432)
Q Consensus 565 ~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~ 626 (1432)
+....+..++..||++|++||.|+ ..|+ |++|||+.+|+|..+|+.+.++++++|+.
T Consensus 16 ~~~~~l~~~l~~Lt~~e~~vl~l~-~~g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 16 PRGSHMQDPLSGLTDQERTLLGLL-SEGL----TNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -----------CCCHHHHHHHHHH-HTTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH-HcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 345668889999999999999996 6777 99999999999999999999999999974
No 64
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=97.74 E-value=3e-05 Score=70.20 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=49.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHH
Q psy15215 568 SVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRP 626 (1432)
Q Consensus 568 ~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~ 626 (1432)
..+..++..||++|+.|+.+ |..|+ |++|||+.+|+|..+|+.+..+++++|+.
T Consensus 8 ~~l~~~l~~L~~~e~~vl~l-~~~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 8 NDIRARLQTLSERERQVLSA-VVAGL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHHHHHHHHHCHHHHHHHHH-HTTTC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHH-HHcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 46778899999999999999 56676 99999999999999999999999999984
No 65
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=97.63 E-value=3.4e-05 Score=70.45 Aligned_cols=55 Identities=20% Similarity=0.416 Sum_probs=47.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q psy15215 569 VVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLA 628 (1432)
Q Consensus 569 ~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~~l 628 (1432)
.+..++..||++|++||.+ |..|+ |++|||+.+|+|..+|+.+.++++++|+...
T Consensus 14 ~~~~~~~~Lt~~e~~vl~l-~~~g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 14 TTERDVNQLTPRERDILKL-IAQGL----PNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp ---CCGGGSCHHHHHHHHH-HTTTC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHccCCHHHHHHHHH-HHcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 3567889999999999999 56666 9999999999999999999999999997543
No 66
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=97.61 E-value=0.00011 Score=68.33 Aligned_cols=58 Identities=22% Similarity=0.233 Sum_probs=49.0
Q ss_pred HHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHH
Q psy15215 1362 DILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLK 1424 (1432)
Q Consensus 1362 ~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~ 1424 (1432)
.....||++|++||.+.+ .|+ |.+|||+.||+|..||+..+.++++||.-..+.....
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-~G~----s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~r~~lv~ 82 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-KGF----TNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVL 82 (90)
T ss_dssp ----CCCHHHHHHHHHHH-TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred ccccCCCHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 356789999999999987 676 9999999999999999999999999999877776544
No 67
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=97.56 E-value=8.7e-05 Score=63.43 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHH
Q psy15215 1369 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLK 1424 (1432)
Q Consensus 1369 ~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~ 1424 (1432)
|+|++|+.+ +..|+ |.+|||+.||+|..||++..+++++||+...+.....
T Consensus 1 ~re~~vl~l-~~~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~l~~ 51 (61)
T 2jpc_A 1 LRERQVLKL-IDEGY----TNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLN 51 (61)
T ss_dssp CHHHHHHHH-HHTSC----CSHHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred CHHHHHHHH-HHcCC----CHHHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 579999999 77777 9999999999999999999999999999988777544
No 68
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=97.42 E-value=0.00021 Score=67.59 Aligned_cols=56 Identities=25% Similarity=0.327 Sum_probs=49.4
Q ss_pred HccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHH
Q psy15215 1364 LNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLK 1424 (1432)
Q Consensus 1364 L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~ 1424 (1432)
...||++|++||.+. ..|+ |.+|||+.||+|..||+..+.++++||.-..+.....
T Consensus 32 ~~~Lt~re~~Vl~l~-~~G~----s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r~elv~ 87 (99)
T 1p4w_A 32 DKRLSPKESEVLRLF-AEGF----LVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLN 87 (99)
T ss_dssp SSSCCHHHHHHHHHH-HHTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred cCCCCHHHHHHHHHH-HcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 367999999999995 4677 9999999999999999999999999999887776543
No 69
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=97.34 E-value=0.00017 Score=64.17 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=45.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q psy15215 570 VKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPL 627 (1432)
Q Consensus 570 l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~~ 627 (1432)
....+..||++|+.|+.+ |..|+ |.+|||+.+|+|+.+|+++..+++.+|+..
T Consensus 5 ~~~~~~~L~~~e~~il~~-~~~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 5 EFQSKPLLTKREREVFEL-LVQDK----TTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp ---CCCCCCHHHHHHHHH-HTTTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCCCCCHHHHHHHHH-HHcCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 445678899999999999 56666 999999999999999999999999999743
No 70
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=97.13 E-value=0.00044 Score=64.18 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=42.1
Q ss_pred HHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 572 DILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 572 ~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
.....||++|++||.|.+ .|+ |.+|||+.||+|..+|+.+..++++||.
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-~G~----s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-KGF----TNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ----CCCHHHHHHHHHHH-TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 457789999999999987 666 9999999999999999999999999985
No 71
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=96.84 E-value=0.00087 Score=57.07 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHH
Q psy15215 579 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRP 626 (1432)
Q Consensus 579 ~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~ 626 (1432)
|+|++|+.+ +..|+ |.+|||+.+|+|+.+|+.+.++++++|+.
T Consensus 1 ~re~~vl~l-~~~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 1 LRERQVLKL-IDEGY----TNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp CHHHHHHHH-HHTSC----CSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHH-HHcCC----CHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 579999999 77777 99999999999999999999999999974
No 72
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=96.83 E-value=0.0012 Score=62.41 Aligned_cols=47 Identities=28% Similarity=0.405 Sum_probs=42.6
Q ss_pred HhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 574 LNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 574 L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
...||++|++||.+. ..|+ |.+|||+.||+|..+|+....+++++|.
T Consensus 32 ~~~Lt~re~~Vl~l~-~~G~----s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLF-AEGF----LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHH-HHTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHH-HcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 366999999999995 4666 9999999999999999999999999995
No 73
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=96.40 E-value=0.0046 Score=68.35 Aligned_cols=55 Identities=20% Similarity=0.118 Sum_probs=48.6
Q ss_pred ccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHH
Q psy15215 1365 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLK 1424 (1432)
Q Consensus 1365 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~ 1424 (1432)
..||++|++||.+. ..|. |.+|||++||+|..||+.++.++++||.-..+.....
T Consensus 174 ~~Lt~~e~~vl~~~-~~g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~ 228 (236)
T 2q0o_A 174 QMLSPREMLCLVWA-SKGK----TASVTANLTGINARTVQHYLDKARAKLDAESVPQLVA 228 (236)
T ss_dssp GSCCHHHHHHHHHH-HTTC----CHHHHHHHHCCCHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred CCCCHHHHHHHHHH-HcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 35999999999995 4666 9999999999999999999999999999888776543
No 74
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=96.33 E-value=0.0052 Score=67.79 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=47.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLK 1424 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~ 1424 (1432)
.||++|++||.+. ..|+ |.+|||+.||+|..||+..+.++++||.-..+.+...
T Consensus 173 ~Lt~~e~~vl~~~-~~g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~ 226 (234)
T 1l3l_A 173 WLDPKEATYLRWI-AVGK----TMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTA 226 (234)
T ss_dssp CCCHHHHHHHHHH-TTTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred CCCHHHHHHHHHH-HcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5999999999995 4666 9999999999999999999999999998877776543
No 75
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=96.03 E-value=0.018 Score=63.57 Aligned_cols=54 Identities=22% Similarity=0.347 Sum_probs=48.1
Q ss_pred ccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhH
Q psy15215 1365 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKL 1423 (1432)
Q Consensus 1365 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l 1423 (1432)
..||++|++||.+. ..|+ |.+|||+.||+|..||+..+.++++||.-..+....
T Consensus 174 ~~Lt~re~~vl~~~-~~G~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~~ 227 (237)
T 3szt_A 174 VRLTARETEMLKWT-AVGK----TYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEAT 227 (237)
T ss_dssp CCCCHHHHHHHHHH-HTTC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred CCCCHHHHHHHHHH-HcCC----CHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 46999999999996 4566 999999999999999999999999999887777654
No 76
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=95.97 E-value=0.014 Score=54.82 Aligned_cols=46 Identities=9% Similarity=0.074 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhh
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr 1415 (1432)
++++.-..|-.++|..|+ |..|||+.||+||.+|++.+.+|...+-
T Consensus 18 ~~~~~~~~~A~lyYv~g~----tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 18 EVGQQTIEIARGVLVDGK----PQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHHHHTTCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 688999999999999998 9999999999999999999999998763
No 77
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=95.75 E-value=0.012 Score=66.18 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=47.3
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhh
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYK 1422 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~ 1422 (1432)
.||++|++||.+.. .|+ |.+|||+.||+|..||+..+.++++||.-..+...
T Consensus 197 ~Lt~re~~vl~~~~-~G~----s~~eIA~~l~is~~TV~~~~~~~~~kl~~~~~~~~ 248 (265)
T 3qp6_A 197 PLSQREYDIFHWMS-RGK----TNWEIATILNISERTVKFHVANVIRKLNANNRTHA 248 (265)
T ss_dssp CCCHHHHHHHHHHH-TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred CCCHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHH
Confidence 69999999999984 666 99999999999999999999999999998777654
No 78
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=95.68 E-value=0.012 Score=47.09 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.|++.++..+...|..|. |..+||+.||||+.||+.++.+
T Consensus 5 ~l~~~~~~~i~~~~~~g~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNV----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTTC----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHhh
Confidence 588888866666676666 9999999999999999988754
No 79
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=95.37 E-value=0.015 Score=64.14 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
.||++|++||.+. ..|+ |.+|||+.+|+|..+|+.+..++++||.
T Consensus 175 ~Lt~~e~~vl~~~-~~g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 175 MLSPREMLCLVWA-SKGK----TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp SCCHHHHHHHHHH-HTTC----CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH-HcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 5999999999995 4666 9999999999999999999999999996
No 80
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=95.35 E-value=0.015 Score=64.03 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=41.3
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
.||++|++||.+. ..|+ |.+|||+.||+|..+|+.+.+++++||.
T Consensus 173 ~Lt~~e~~vl~~~-~~g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 173 WLDPKEATYLRWI-AVGK----TMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCHHHHHHHHHH-TTTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH-HcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 5999999999995 4666 9999999999999999999999999995
No 81
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=95.02 E-value=0.011 Score=49.07 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=30.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.+++..+.|+.+ |..|. |..|||+.||+|+.||++++.+|
T Consensus 16 ~~~~~~~~i~~l-~~~g~----s~~eIA~~lgis~~TV~~~l~~a 55 (55)
T 2x48_A 16 SEDDLVSVAHEL-AKMGY----TVQQIANALGVSERKVRRYLESC 55 (55)
T ss_dssp SHHHHHHHHHHH-HHTTC----CHHHHHHHHTSCHHHHHHHHTC-
T ss_pred cCHHHHHHHHHH-HHcCC----CHHHHHHHHCcCHHHHHHHHHhC
Confidence 345556667666 55666 99999999999999999987654
No 82
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=94.74 E-value=0.051 Score=59.91 Aligned_cols=46 Identities=26% Similarity=0.427 Sum_probs=41.6
Q ss_pred hcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 575 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 575 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
..||++|++||.+. ..|+ |.+|||+.||+|..+|+.+..++++||.
T Consensus 174 ~~Lt~re~~vl~~~-~~G~----s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 174 VRLTARETEMLKWT-AVGK----TYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp CCCCHHHHHHHHHH-HTTC----CHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHH-HcCC----CHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 46999999999996 4555 9999999999999999999999999985
No 83
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=94.42 E-value=0.055 Score=52.27 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=43.8
Q ss_pred CCeEEEEecchhHHHHhhhC-C-----------------------CCCeEEEEecCcHHHHHHHHHHHHHhhhhcCCCce
Q psy15215 729 SGYVLITEGYMDVIGLSQFG-F-----------------------FANSSYTCFDGDQAGRRAARRALEVCLLYATDDKI 784 (1432)
Q Consensus 729 ~~~~~~vEG~~D~ia~~~~g-~-----------------------~~~~i~~~~D~D~aG~~a~~~~~~~~~~~~~~~~~ 784 (1432)
-+.+|||||=.|+.+|.++| + ....|+++.|+|.+|.+-..+..+.+ ++
T Consensus 4 i~~vIVVEGk~D~~~L~~~~~~~~~iI~t~Gsi~~~~l~~I~~~~~~r~VIi~TD~D~~GekIRk~i~~~l-----p~-- 76 (119)
T 2fcj_A 4 VEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRMF-----PE-- 76 (119)
T ss_dssp CCEEEEESSHHHHHHHHHHBSSCCEEEECCSCCCHHHHHHHHHHTTTSEEEEECCSSHHHHHHHHHHHHHC-----TT--
T ss_pred cCeEEEEechHHHHHHHHhcCCCCCEEEeCCccCHHHHHHHHHHhcCCCEEEEECCCccHHHHHHHHHHHC-----CC--
Confidence 46799999999999999998 3 35788999999999987665544433 22
Q ss_pred EEEecCCCC
Q psy15215 785 IKFLFLPDK 793 (1432)
Q Consensus 785 ~~~~~lp~~ 793 (1432)
+..+++|..
T Consensus 77 ~~hafi~r~ 85 (119)
T 2fcj_A 77 AEHLYIDRA 85 (119)
T ss_dssp SEEECCCTT
T ss_pred CcEEeccCC
Confidence 356667764
No 84
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=94.22 E-value=0.038 Score=62.10 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRP 626 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~ 626 (1432)
.||++|++||.+.. .|+ |.+|||+.||+|..+|+.+..++++||.-
T Consensus 197 ~Lt~re~~vl~~~~-~G~----s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 197 PLSQREYDIFHWMS-RGK----TNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCHHHHHHHHHHH-TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 69999999999984 566 99999999999999999999999999963
No 85
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=94.19 E-value=0.11 Score=48.71 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKL 624 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kL 624 (1432)
++++.-.+|-.++|..|+ |+.|||+.+|+|+.+|.+...+|...+
T Consensus 18 ~~~~~~~~~A~lyYv~g~----tQ~eIA~~lGiSR~~VsrlL~~Ar~~~ 62 (101)
T 2w7n_A 18 EVGQQTIEIARGVLVDGK----PQATFATSLGLTRGAVSQAVHRVWAAF 62 (101)
T ss_dssp CCCHHHHHHHHHHHTTCC----CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCC----CHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 588888999999999888 999999999999999998888887765
No 86
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=94.02 E-value=0.11 Score=55.28 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=49.5
Q ss_pred HHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHH
Q psy15215 1361 KDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLK 1424 (1432)
Q Consensus 1361 ~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~ 1424 (1432)
...+..||++|++|+.+. ..| +|.++||+.+|+|..||+...++.++||.-..+.....
T Consensus 137 ~~~~~~Lt~rE~~vl~~l-~~g----~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~~~~~~~i~ 195 (208)
T 1yio_A 137 EQLFSSLTGREQQVLQLT-IRG----LMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVH 195 (208)
T ss_dssp HHHHHTSCHHHHHHHHHH-TTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHH-HcC----CcHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 344567999999999875 344 49999999999999999999999999998877666544
No 87
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=94.01 E-value=0.051 Score=43.38 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
.|++.++..+...+..|+ |..+||+.||+|+.+|..+..
T Consensus 5 ~l~~~~~~~i~~~~~~g~----s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNV----SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCHHHHHHHHHHHHTTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHh
Confidence 488888866666676666 999999999999999987654
No 88
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=92.79 E-value=0.18 Score=54.12 Aligned_cols=55 Identities=24% Similarity=0.405 Sum_probs=47.5
Q ss_pred ccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHH
Q psy15215 1365 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLK 1424 (1432)
Q Consensus 1365 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~ 1424 (1432)
..||++|++|+.+- ..|. |.+|||+.+++|..||+...++.++||.-..+.....
T Consensus 153 ~~Lt~rE~~vl~~l-~~g~----s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~~~r~~l~~ 207 (215)
T 1a04_A 153 NQLTPRERDILKLI-AQGL----PNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAV 207 (215)
T ss_dssp GGSCHHHHHHHHHH-HTTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred cCCCHHHHHHHHHH-HcCC----CHHHHHHHHCCCHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 45999999999874 3454 9999999999999999999999999998877776543
No 89
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=91.82 E-value=0.21 Score=54.19 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=46.4
Q ss_pred ccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhH
Q psy15215 1365 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKL 1423 (1432)
Q Consensus 1365 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l 1423 (1432)
..||++|++||.+- ..|. |.+|||+.+++|..||+...++.++||.-..+....
T Consensus 148 ~~LT~rE~~vL~~l-~~g~----s~~eIa~~l~is~~TV~~hi~~l~~KL~~~~r~~l~ 201 (225)
T 3c3w_A 148 SGLTDQERTLLGLL-SEGL----TNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAA 201 (225)
T ss_dssp TTSCHHHHHHHHHH-HTTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCCSSCHHH
T ss_pred CCCCHHHHHHHHHH-HCCC----CHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 46999999999874 3444 999999999999999999999999999877766543
No 90
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=91.81 E-value=0.073 Score=43.90 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHH
Q psy15215 577 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 619 (1432)
Q Consensus 577 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~r 619 (1432)
+++..+.|+.+ +..|. |..|||+.+|+|+.+|+.+..+
T Consensus 17 ~~~~~~~i~~l-~~~g~----s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 17 EDDLVSVAHEL-AKMGY----TVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHHHHH-HHTTC----CHHHHHHHHTSCHHHHHHHHTC
T ss_pred CHHHHHHHHHH-HHcCC----CHHHHHHHHCcCHHHHHHHHHh
Confidence 44555666666 55566 9999999999999999987654
No 91
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=91.34 E-value=0.18 Score=54.64 Aligned_cols=56 Identities=18% Similarity=0.339 Sum_probs=47.8
Q ss_pred HccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHH
Q psy15215 1364 LNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLK 1424 (1432)
Q Consensus 1364 L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~ 1424 (1432)
...||++|++||.+ +..| +|.++||+.+++|..||+...++.++||.-..+.....
T Consensus 157 ~~~Lt~rE~~vL~~-l~~g----~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~~~~~~l~~ 212 (225)
T 3klo_A 157 YAKLTKREQQIIKL-LGSG----ASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALI 212 (225)
T ss_dssp HHTSCHHHHHHHHH-HTTT----CCHHHHHHHTTCCHHHHHHHHHHHTTTSCCSSHHHHHH
T ss_pred cccCCHHHHHHHHH-HHcC----CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34699999999988 4444 49999999999999999999999999998877776544
No 92
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=89.37 E-value=0.55 Score=49.84 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=43.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 571 KDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 571 ~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
...+..||++|++|+.+. .. ++|.++||+.+|+|..+|+.+.++.++||.
T Consensus 137 ~~~~~~Lt~rE~~vl~~l-~~----g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 137 EQLFSSLTGREQQVLQLT-IR----GLMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp HHHHHTSCHHHHHHHHHH-TT----TCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHH-Hc----CCcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 445667999999999875 33 459999999999999999999999999985
No 93
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=89.31 E-value=0.89 Score=49.94 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=55.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHH
Q psy15215 1355 SMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLK 1424 (1432)
Q Consensus 1355 ~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~ 1424 (1432)
.........+..|+++++.++.+.. .+. +..+||..+|+|..+|+....++++||.-..+...+.
T Consensus 187 ~~~~~~~~~l~~L~~r~~~i~~~~~-~g~----~~~eia~~l~~s~~tv~~~l~~i~~kl~~~~~~elv~ 251 (258)
T 3p7n_A 187 ARRERAAEMLKTLSPRQLEVTTLVA-SGL----RNKEVAARLGLSEKTVKMHRGLVMEKLNLKTSADLVR 251 (258)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHH-TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 3456677889999999999998865 444 9999999999999999999999999999888776554
No 94
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=87.96 E-value=0.6 Score=49.84 Aligned_cols=46 Identities=24% Similarity=0.504 Sum_probs=40.5
Q ss_pred hcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 575 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 575 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
..||++|++|+.+- ..|. |.+|||+.+++|..+|+.+.++.++||.
T Consensus 153 ~~Lt~rE~~vl~~l-~~g~----s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLI-AQGL----PNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHH-HTTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHH-HcCC----CHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 45999999999875 3444 9999999999999999999999999995
No 95
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=87.50 E-value=0.49 Score=50.76 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=45.0
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC---CCHHHHHHHHHHHHHHhhCch
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFD---VTRERIRQIEAKALRKLRHPS 1418 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~---vs~~~Vrq~~~rAl~kLr~~~ 1418 (1432)
.||++|.+||.+ +..|.+...|.++||+.++ +|..||+...++.++||....
T Consensus 145 ~Lt~rE~~vl~~-l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~~~ 199 (220)
T 1p2f_A 145 HLPKKEFEILLF-LAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIEDDP 199 (220)
T ss_dssp CCCHHHHHHHHH-HHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCSST
T ss_pred ecCHHHHHHHHH-HHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccC
Confidence 599999999976 4456556789999999999 999999999999999997543
No 96
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=87.25 E-value=0.29 Score=39.24 Aligned_cols=38 Identities=8% Similarity=0.165 Sum_probs=27.2
Q ss_pred CCHHH-HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1367 LTPRE-SKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1367 L~~re-r~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+++.+ +.|+.+ +..|. |..+||+.||||+.||..++.+
T Consensus 6 ~~~~~~~~i~~l-~~~g~----s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 6 INKHEQEQISRL-LEKGH----PRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SCTTHHHHHHHH-HHTTC----CHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHHH-HHcCC----CHHHHHHHHCCCHHHHHHHHHH
Confidence 44433 445555 44444 9999999999999999987643
No 97
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=86.96 E-value=0.65 Score=50.61 Aligned_cols=52 Identities=17% Similarity=0.059 Sum_probs=44.1
Q ss_pred ccCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHhhCc
Q psy15215 1365 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQF-----DVTRERIRQIEAKALRKLRHP 1417 (1432)
Q Consensus 1365 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l-----~vs~~~Vrq~~~rAl~kLr~~ 1417 (1432)
..||++|.+||.+- ..+.+...|.+|||+.+ ++|..||+...++.++||...
T Consensus 152 ~~LT~rE~~vL~~l-~~~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~~ 208 (238)
T 2gwr_A 152 ISLTPLEFDLLVAL-ARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEKD 208 (238)
T ss_dssp ECCCHHHHHHHHHH-HHSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCSS
T ss_pred cccCHHHHHHHHHH-HHCCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhccC
Confidence 35999999999764 45655678999999999 999999999999999999753
No 98
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=86.43 E-value=0.6 Score=41.54 Aligned_cols=42 Identities=10% Similarity=0.224 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1369 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1369 ~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
+.++.||.+-.-.+.+.+.|..|||+.+|||+.+|++++.+-
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L 55 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 445777665554553456799999999999999998776543
No 99
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=86.15 E-value=0.99 Score=40.54 Aligned_cols=41 Identities=10% Similarity=0.239 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1369 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1369 ~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+.++.||.+-.-.+.|...|..|||+.||||+.+|++.+.+
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~ 50 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYS 50 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 34666776655555455779999999999999998865544
No 100
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=86.09 E-value=0.6 Score=50.41 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=44.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHhhCc
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQF-----DVTRERIRQIEAKALRKLRHP 1417 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l-----~vs~~~Vrq~~~rAl~kLr~~ 1417 (1432)
.||++|.+||.+- ..+.+...|.+|||+.+ ++|..||+...++.++||...
T Consensus 156 ~Lt~rE~~vL~~l-~~~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~~ 211 (230)
T 2oqr_A 156 TLPLKEFDLLEYL-MRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEAD 211 (230)
T ss_dssp CCCHHHHHHHHHH-HHTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCSS
T ss_pred ecCHHHHHHHHHH-HhCCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhhC
Confidence 5999999999874 35655678999999999 999999999999999999753
No 101
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=85.94 E-value=0.63 Score=50.28 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=40.0
Q ss_pred hcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 575 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 575 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
..||++|++||.+- ..| .|.+|||+.+++|..+|+...++.++||.
T Consensus 148 ~~LT~rE~~vL~~l-~~g----~s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQERTLLGLL-SEG----LTNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHHHHHHHH-HTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHH-HCC----CCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 45999999999874 344 59999999999999999999999988884
No 102
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=84.97 E-value=0.72 Score=49.52 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=45.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHhhCchhh
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFD-----VTRERIRQIEAKALRKLRHPSRY 1420 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~-----vs~~~Vrq~~~rAl~kLr~~~~~ 1420 (1432)
.||++|.+||.+- ..|.+...|.+|||+.++ +|..||+...++.++||....+.
T Consensus 151 ~Lt~rE~~vL~~l-~~~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~~~~~ 209 (225)
T 1kgs_A 151 DLTKKEYQILEYL-VMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGFKK 209 (225)
T ss_dssp CCCHHHHHHHHHH-HHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHTTCSS
T ss_pred ecCHHHHHHHHHH-HhCCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhCCCCC
Confidence 5999999999764 355456679999999998 99999999999999999765443
No 103
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=83.68 E-value=0.73 Score=49.73 Aligned_cols=47 Identities=17% Similarity=0.352 Sum_probs=40.5
Q ss_pred HhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 574 LNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 574 L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
...||++|.+||.+- .. ++|.++||+.+++|..+|+.+.++.++||.
T Consensus 157 ~~~Lt~rE~~vL~~l-~~----g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~ 203 (225)
T 3klo_A 157 YAKLTKREQQIIKLL-GS----GASNIEIADKLFVSENTVKTHLHNVFKKIN 203 (225)
T ss_dssp HHTSCHHHHHHHHHH-TT----TCCHHHHHHHTTCCHHHHHHHHHHHTTTSC
T ss_pred cccCCHHHHHHHHHH-Hc----CCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 345999999999884 34 459999999999999999999999988884
No 104
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=83.67 E-value=0.82 Score=48.04 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1370 RESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1370 rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
.-..+..+ |..|+ |.+|||+.||||+.+|++++..|.
T Consensus 13 iG~ria~~-y~~g~----tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 13 IGLRLMRM-KNDGM----SQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HHHHHHHH-HHTTC----CHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHcCC----CHHHHHHHhCcCHHHHHHHHHHhc
Confidence 34456666 76777 999999999999999999998875
No 105
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=82.94 E-value=0.79 Score=49.49 Aligned_cols=54 Identities=15% Similarity=0.028 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHhhCchhh
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFD-----VTRERIRQIEAKALRKLRHPSRY 1420 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~-----vs~~~Vrq~~~rAl~kLr~~~~~ 1420 (1432)
.||++|.+||.+- ..|.+...|.++||+.++ +|..||+...++.++||....+.
T Consensus 159 ~Lt~rE~~vL~~l-~~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~~~~~ 217 (233)
T 1ys7_A 159 DLTKREFDLLAVL-AEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGP 217 (233)
T ss_dssp CCCHHHHHHHHHH-HHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHCC--C
T ss_pred ccCHHHHHHHHHH-HhCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhccCCCC
Confidence 5999999999764 456556679999999998 99999999999999999865443
No 106
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=82.05 E-value=1.4 Score=47.20 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcc---cchhHHHHHHHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFD---VTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~---is~~~v~~~~~rAl~kLr 625 (1432)
.||++|.+||.+ +..|.|...|.++||+.++ +|..+|+.+.++.++||.
T Consensus 145 ~Lt~rE~~vl~~-l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~ 196 (220)
T 1p2f_A 145 HLPKKEFEILLF-LAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIE 196 (220)
T ss_dssp CCCHHHHHHHHH-HHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHH-HHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHh
Confidence 599999999976 4556556689999999999 999999999888888874
No 107
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=81.93 E-value=0.99 Score=49.71 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHH-----HhCCCHHHHHHHHHHHHHHhhCchhh
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGK-----QFDVTRERIRQIEAKALRKLRHPSRY 1420 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~-----~l~vs~~~Vrq~~~rAl~kLr~~~~~ 1420 (1432)
.||++|.+||.+-. .+.+..+|.+|||+ .+++|..||+...++.++||....+.
T Consensus 182 ~LT~rE~evL~ll~-~g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~~~~~ 240 (249)
T 3q9s_A 182 RLSPKEFDILALLI-RQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRDLDGY 240 (249)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCCCSCC
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhcCCCC
Confidence 59999999998754 56567789999999 58899999999999999999865543
No 108
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=80.46 E-value=1.6 Score=46.84 Aligned_cols=49 Identities=10% Similarity=-0.016 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhc-----ccchhHHHHHHHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQF-----DVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l-----~is~~~v~~~~~rAl~kLr 625 (1432)
.||++|.+||.+- ..|.|...|.+|||+.+ ++|..+|+.+.++.++||.
T Consensus 156 ~Lt~rE~~vL~~l-~~~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~ 209 (230)
T 2oqr_A 156 TLPLKEFDLLEYL-MRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIE 209 (230)
T ss_dssp CCCHHHHHHHHHH-HHTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHH-HhCCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHh
Confidence 4999999999864 45655668999999999 9999999999888888884
No 109
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=80.29 E-value=1.8 Score=47.04 Aligned_cols=49 Identities=18% Similarity=0.082 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhc-----ccchhHHHHHHHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQF-----DVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l-----~is~~~v~~~~~rAl~kLr 625 (1432)
.||++|.+||.+- ..|.|...|.+|||+.+ ++|..+|+...++.++||.
T Consensus 153 ~LT~rE~~vL~~l-~~~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~ 206 (238)
T 2gwr_A 153 SLTPLEFDLLVAL-ARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVE 206 (238)
T ss_dssp CCCHHHHHHHHHH-HHSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHH-HHCCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhc
Confidence 5999999999864 45655668999999999 9999999999888888884
No 110
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=79.38 E-value=3 Score=45.59 Aligned_cols=56 Identities=18% Similarity=0.321 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 565 SMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 565 ~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
.........+..|+++++.++.+.. .| ++..+||..+|+|..+|+....++++||.
T Consensus 187 ~~~~~~~~~l~~L~~r~~~i~~~~~-~g----~~~~eia~~l~~s~~tv~~~l~~i~~kl~ 242 (258)
T 3p7n_A 187 ARRERAAEMLKTLSPRQLEVTTLVA-SG----LRNKEVAARLGLSEKTVKMHRGLVMEKLN 242 (258)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHH-TT----CCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3456677889999999999999864 44 49999999999999999999999988885
No 111
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=79.30 E-value=2.1 Score=46.93 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=44.2
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHhhC
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQF-----DVTRERIRQIEAKALRKLRH 1416 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l-----~vs~~~Vrq~~~rAl~kLr~ 1416 (1432)
.||++|.+||.+-. .+.|...|.++|++.+ +++..+|+..+++.++||..
T Consensus 176 ~LT~rE~~iL~~l~-~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 176 SLSPTEFTLLRYFV-INAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp CCCHHHHHHHHHHH-HTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 59999999998754 5556788999999999 78999999999999999975
No 112
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=78.72 E-value=2.8 Score=37.57 Aligned_cols=43 Identities=14% Similarity=0.296 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 579 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 579 ~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
+.++.||.+-...+.|...|..|||+.||+|+.+|+ ++|++|.
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~----~~L~~Le 52 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEIN----RVLYSLA 52 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHH----HHHHHHH
Confidence 346667766555554567799999999999999887 4566664
No 113
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=78.60 E-value=2 Score=42.37 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.|++.++..+...+..|. |..+||+.||+|+.||+.+..+.
T Consensus 6 ~~s~~~r~~i~~~~~~G~----s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 6 ALSDTERAQLDVMKLLNV----SLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCHHHHHHHHHHHHTTC----CHHHHHHHHTCCHHHHHHHHHSG
T ss_pred cCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHcc
Confidence 477887776666565565 99999999999999999988753
No 114
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=78.38 E-value=1.8 Score=38.34 Aligned_cols=38 Identities=11% Similarity=0.301 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 579 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 579 ~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
+.++.||.+-.-.+.+.+.|..|||+.+|+|..+|+++
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~ 51 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRV 51 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 44677776655555455679999999999999998844
No 115
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=78.33 E-value=2.7 Score=40.45 Aligned_cols=42 Identities=10% Similarity=0.005 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
.+++.++.-+...+..|. |..+||+.||||+.||+.++.+..
T Consensus 17 ~~s~~~r~~i~~~~~~g~----s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADGI----RPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHHHTTC----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 466666654444454555 999999999999999999998754
No 116
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=78.32 E-value=2 Score=45.56 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHH--hcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMR--FGIEMSSDHTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr--~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
.||++|++||..- |....|.+.|..|||+.||+|..+|+.++.
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 5999999999764 333445667999999999999998876653
No 117
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=78.09 E-value=3.4 Score=37.40 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=28.6
Q ss_pred CCHHHH-HHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1367 LTPRES-KVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1367 L~~rer-~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
.|+..+ .++.+ |-.|. |..+||+.||||+.+|+++..+..
T Consensus 23 ys~e~k~~~v~~-~~~g~----s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 23 LTPRDKIHAIQR-IHDGE----SKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp CCHHHHHHHHHH-HHHTC----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHCCC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455543 34444 33344 999999999999999999986543
No 118
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=77.77 E-value=1.6 Score=41.71 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=27.9
Q ss_pred ccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1365 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1365 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
..|+.| .+|+.+- ..| +|+.|||+.+|+|..||.. .+++|
T Consensus 60 ~aLs~R-~eV~klL-~~G----~syreIA~~~g~S~aTIsR-v~r~L 99 (119)
T 3kor_A 60 QSLSQR-LQVAKMI-KQG----YTYATIEQESGASTATISR-VKRSL 99 (119)
T ss_dssp HHHHHH-HHHHHHH-HHT----CCHHHHHHHHCCCHHHHHH-HHHHH
T ss_pred HHHHHH-HHHHHHH-HcC----CCHHHHHHHHCCCHHHHHH-HHHHH
Confidence 345555 5666663 234 4999999999999999985 44444
No 119
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=77.74 E-value=3.2 Score=36.83 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=27.4
Q ss_pred HHHHHHh-CCCCCHHHHHHHcCCCHHHHHHHHHHc
Q psy15215 1284 RQILQET-GSEPDPSVIAIKMEMPEEKIRKIMKIA 1317 (1432)
Q Consensus 1284 ~~~~~~~-g~~pt~~eia~~~~~~~~~v~~~~~~~ 1317 (1432)
++...+. |.+||..|||+.+|+|+..|+.-|...
T Consensus 14 ~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~L 48 (77)
T 2jt1_A 14 QERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQL 48 (77)
T ss_dssp HHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3333444 889999999999999999999988654
No 120
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=77.69 E-value=1.9 Score=34.21 Aligned_cols=37 Identities=8% Similarity=0.173 Sum_probs=26.1
Q ss_pred CCHHH-HHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHH
Q psy15215 577 LTPRE-SKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 577 L~~re-r~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
+++.+ +.|+.+ +..|. |..+||+.+|+|+.+|..+..
T Consensus 6 ~~~~~~~~i~~l-~~~g~----s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 6 INKHEQEQISRL-LEKGH----PRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp SCTTHHHHHHHH-HHTTC----CHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHHHH-HHcCC----CHHHHHHHHCCCHHHHHHHHH
Confidence 44433 345555 44444 999999999999999987643
No 121
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=77.58 E-value=2.4 Score=45.33 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcc-----cchhHHHHHHHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFD-----VTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~-----is~~~v~~~~~rAl~kLr 625 (1432)
.||++|.+||.+- ..|.+...|.+|||+.++ +|..+|+.+.++.++||.
T Consensus 151 ~Lt~rE~~vL~~l-~~~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~ 204 (225)
T 1kgs_A 151 DLTKKEYQILEYL-VMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVD 204 (225)
T ss_dssp CCCHHHHHHHHHH-HHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHH-HhCCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhh
Confidence 5999999999764 455555679999999998 999999998888888874
No 122
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=76.97 E-value=2 Score=38.44 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=21.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.|..|||+.||+|+++|++++++=
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~L 54 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDL 54 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 599999999999999999887653
No 123
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=76.60 E-value=0.71 Score=49.61 Aligned_cols=51 Identities=16% Similarity=0.078 Sum_probs=43.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHhhCc
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFD-----VTRERIRQIEAKALRKLRHP 1417 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~-----vs~~~Vrq~~~rAl~kLr~~ 1417 (1432)
.||++|.+||.+- ..+.+...|.+|||+.++ +|..||+...++.++||...
T Consensus 143 ~Lt~rE~~vL~~l-~~~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~~ 198 (223)
T 2hqr_A 143 EVKGKPFEVLTHL-ARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKP 198 (223)
T ss_dssp CCCSTTTHHHHHH-HHTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHTT
T ss_pred ecCHHHHHHHHHH-HhCCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhcC
Confidence 5999999999764 345345579999999999 99999999999999999753
No 124
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=74.73 E-value=3.7 Score=41.14 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALR 1412 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~ 1412 (1432)
.+++.++.-+...+..|. |..+||+.||||+.||+.++.+...
T Consensus 32 ~~s~e~r~~iv~~~~~G~----s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 32 PLPDVVRQRIVELAHQGV----RPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp CCCHHHHHHHHHHHHTTC----CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 466666654444444555 9999999999999999999987643
No 125
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=74.61 E-value=4.6 Score=37.20 Aligned_cols=41 Identities=7% Similarity=0.178 Sum_probs=30.0
Q ss_pred cCCHHHHH-HHHHHhcc-cCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1366 SLTPRESK-VLRMRFGI-EMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1366 ~L~~rer~-Vl~lr~~~-~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
..|+..+. ++.++.-. |. |..+||..||||+++|+++..+.
T Consensus 5 ~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 5 TYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHHH
Confidence 35666554 44444323 45 99999999999999999998654
No 126
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=74.60 E-value=2.6 Score=45.23 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcc-----cchhHHHHHHHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFD-----VTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~-----is~~~v~~~~~rAl~kLr 625 (1432)
.||++|.+||.+- ..|.+...|.++||+.++ +|..+|+.+.++.++||.
T Consensus 159 ~Lt~rE~~vL~~l-~~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~ 212 (233)
T 1ys7_A 159 DLTKREFDLLAVL-AEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLE 212 (233)
T ss_dssp CCCHHHHHHHHHH-HHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHH-HhCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhc
Confidence 4999999999864 456556679999999998 999999999888888884
No 127
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=74.28 E-value=2.8 Score=45.97 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHh-----hcccchhHHHHHHHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGK-----QFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~-----~l~is~~~v~~~~~rAl~kLr 625 (1432)
.||++|.+||.+-. .+.+..+|.+|||+ .++++..+|+...++.++||.
T Consensus 182 ~LT~rE~evL~ll~-~g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~ 235 (249)
T 3q9s_A 182 RLSPKEFDILALLI-RQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLR 235 (249)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhh
Confidence 59999999998754 56566789999999 588899999999999888885
No 128
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=73.40 E-value=7.6 Score=36.97 Aligned_cols=51 Identities=12% Similarity=0.256 Sum_probs=38.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhcccC-CCCCCHHHHHHHhCCCHHHHHHHH
Q psy15215 1357 RSVVKDILNSLTPRESKVLRMRFGIEM-SSDHTLEEVGKQFDVTRERIRQIE 1407 (1432)
Q Consensus 1357 ~~~l~~~L~~L~~rer~Vl~lr~~~~~-~~~~t~~EIa~~l~vs~~~Vrq~~ 1407 (1432)
...|...+..||+.|+.|...-.-.-. -..+|..|||+..|||..||-+.-
T Consensus 9 ~~~i~~~~~~ls~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~ 60 (111)
T 2o3f_A 9 LAIIQSMXHXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLC 60 (111)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHH
Confidence 456777889999999998876543210 023499999999999999998654
No 129
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=72.62 E-value=5.1 Score=35.49 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHHc
Q psy15215 501 GSEPDPSVIAIKMEMPEEKIRKIMKIA 527 (1432)
Q Consensus 501 g~~pt~~eia~~~~~~~~~v~~~~~~~ 527 (1432)
|.+||..|||+.+|+|+..|+.-+...
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~L 48 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQL 48 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999999999999999988643
No 130
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=71.90 E-value=4.2 Score=34.89 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1367 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
+++..+.||.+--- .+.+.|..|||+.||+|+++|.++++
T Consensus 8 m~~~~~~IL~~L~~--~~~~~s~~eLA~~lglsr~tv~~~l~ 47 (67)
T 2heo_A 8 GDNLEQKILQVLSD--DGGPVAIFQLVKKCQVPKKTLNQVLY 47 (67)
T ss_dssp -CHHHHHHHHHHHH--HCSCEEHHHHHHHHCSCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH--cCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 44455566654321 22456999999999999999886554
No 131
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=71.74 E-value=3.3 Score=47.32 Aligned_cols=37 Identities=14% Similarity=0.367 Sum_probs=32.1
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q psy15215 1372 SKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALR 1412 (1432)
Q Consensus 1372 r~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~ 1412 (1432)
..|..|+|..+. |..|||++||||+.|||+-+.++.+
T Consensus 11 ~~ia~l~~~~~~----~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 11 VKIAQLYYEQDM----TQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHHHTSCC----CHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 357788887666 9999999999999999999988765
No 132
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=71.23 E-value=5.1 Score=33.21 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHhcccCCCCCC----HHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1367 LTPRESKVLRMRFGIEMSSDHT----LEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~~~~t----~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.|+..+.-+...+-.+. | ..+||..|||++++|+++..+.
T Consensus 6 ys~efK~~~~~~~~~g~----s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 6 FTPHFKLQVLESYRNDN----DCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCHHHHHHHHHHHHHCT----TTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHcCC----CcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 45555443334343344 7 9999999999999999997643
No 133
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=70.47 E-value=2.8 Score=44.01 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHH
Q psy15215 580 RESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 621 (1432)
Q Consensus 580 rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl 621 (1432)
...++..+ |..|+ |++|||+.||||+.+|.+....|.
T Consensus 13 iG~ria~~-y~~g~----tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 13 IGLRLMRM-KNDGM----SQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HHHHHHHH-HHTTC----CHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHcCC----CHHHHHHHhCcCHHHHHHHHHHhc
Confidence 34556666 76676 999999999999999998877664
No 134
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=69.91 E-value=6.9 Score=36.28 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=33.2
Q ss_pred HccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1364 LNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1364 L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
...|++.+..+|...+.. +.+.|..|||+.+|+|+++|++++.+
T Consensus 16 ~~~l~~~~~~~l~~l~~~--~~~~t~~ela~~l~is~~tv~~~l~~ 59 (109)
T 2d1h_A 16 CYKITDTDVAVLLKMVEI--EKPITSEELADIFKLSKTTVENSLKK 59 (109)
T ss_dssp HHTCCHHHHHHHHHHHHH--CSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHc--CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 457999988887554421 23469999999999999999876544
No 135
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=69.67 E-value=4.1 Score=49.58 Aligned_cols=121 Identities=10% Similarity=0.132 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCCCCCCCCcCcccccCCCCChHHHHHHHHH
Q psy15215 1277 NKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASM 1356 (1432)
Q Consensus 1277 ~k~~~~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~~~~Sl~~~~~~~~~~~~~d~i~d~~~~~p~~~~~~~~~ 1356 (1432)
.+..++...+.+ +..-|..+||+.+|+|..+|+.-++.......-...+.. ..-|-.+.........+
T Consensus 18 ~R~~~IL~~L~~--~~~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~---~~~Gy~L~~~~~~~~~~------- 85 (485)
T 3sqn_A 18 LRQIRLLEQLLN--VPQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIET---DSSGIRLRNQGNAQTNE------- 85 (485)
T ss_dssp HHHHHHHHHHHH--CCSCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEE---ETTEEEEEEC---CTHH-------
T ss_pred HHHHHHHHHHHh--CCCcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEE---cCCEEEEecCcHHHHHH-------
Confidence 334455555554 445789999999999999999998766544311001100 01111221111101100
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Q psy15215 1357 RSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 1416 (1432)
Q Consensus 1357 ~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~ 1416 (1432)
+ ...+++.+|....+.+..- ....|+.++|+.|.||++||.+-+.+..+.|++
T Consensus 86 ---~---~~~~~~~eR~~~Il~~LL~-~~~isi~~Lae~l~VS~sTi~~DLk~i~~~L~~ 138 (485)
T 3sqn_A 86 ---L---WSLFLPQSISIQLLKELLF-TKELVTTSFLSTSGVSYETLKRHIKKMNQALRD 138 (485)
T ss_dssp ---H---HHHHGGGSHHHHHHHHHHH-CSEEEHHHHHHHHTCCHHHHHHHHHHHHHHHGG
T ss_pred ---H---HHhcCHHHHHHHHHHHHHh-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 1 1123344443333333322 247799999999999999999999888888765
No 136
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=69.09 E-value=30 Score=32.07 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHHHc
Q psy15215 1279 ISRISRQILQETG-SEPDPSVIAIKMEMPEEKIRKIMKIA 1317 (1432)
Q Consensus 1279 ~~~~~~~~~~~~g-~~pt~~eia~~~~~~~~~v~~~~~~~ 1317 (1432)
+.++...+.+... .++|+++||+.+|+|+..+..+.+..
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555666667777 78999999999999999999998754
No 137
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=69.02 E-value=2.1 Score=45.79 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcc-----cchhHHHHHHHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFD-----VTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~-----is~~~v~~~~~rAl~kLr 625 (1432)
.||++|.+||.+- ..|.|...|.+|||+.++ +|..+|+.+.++.++||.
T Consensus 143 ~Lt~rE~~vL~~l-~~~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~ 196 (223)
T 2hqr_A 143 EVKGKPFEVLTHL-ARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMD 196 (223)
T ss_dssp CCCSTTTHHHHHH-HHTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHH-HhCCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHh
Confidence 4999999999864 345445579999999999 999999998888888874
No 138
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=68.71 E-value=5.8 Score=37.21 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHhccc--CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy15215 1367 LTPRESKVLRMRFGIE--MSSDHTLEEVGKQFDVTRERIRQIEAKALRK 1413 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~--~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~k 1413 (1432)
+||.|+.-+..|+-.- ...++|+.+|++.+|+|+.||.+ .+|+++.
T Consensus 37 ~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsR-v~r~L~~ 84 (107)
T 3frw_A 37 CTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISR-VNRSLNY 84 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHH-HHHHHHc
Confidence 7777777666555421 12446999999999999999984 4455443
No 139
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=68.67 E-value=7.3 Score=37.72 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=34.5
Q ss_pred HHccCCHHHHHHHHHHhcccCCCC-CCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1363 ILNSLTPRESKVLRMRFGIEMSSD-HTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1363 ~L~~L~~rer~Vl~lr~~~~~~~~-~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
..-.|++.+..|+..-...+ .+ .|..|||+.+|+|++||...+.+
T Consensus 20 ~~~gLt~~e~~il~~L~~~~--~~~~t~~eLa~~l~~s~sTV~r~L~~ 65 (123)
T 3r0a_A 20 CALNLTKADLNVMKSFLNEP--DRWIDTDALSKSLKLDVSTVQRSVKK 65 (123)
T ss_dssp HHHTCCHHHHHHHHHHHHST--TCCEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHCC--CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 45579999999987654322 23 59999999999999999866544
No 140
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=67.31 E-value=13 Score=38.75 Aligned_cols=55 Identities=13% Similarity=0.263 Sum_probs=41.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1355 SMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1355 ~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.+...+...+..||+.|..||..-+... +.+.|..+||+.+|+|+++|.+.+.+-
T Consensus 27 ~~~~~~~~~~~~lt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is~~tvs~~l~~L 81 (189)
T 3nqo_A 27 KIQIEGDKYFGILTSRQYMTILSILHLP-EEETTLNNIARKMGTSKQNINRLVANL 81 (189)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455666677789999999998766321 124599999999999999998766543
No 141
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=66.83 E-value=32 Score=32.25 Aligned_cols=39 Identities=8% Similarity=0.120 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHc
Q psy15215 1279 ISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIA 1317 (1432)
Q Consensus 1279 ~~~~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~ 1317 (1432)
+.++...+.+....++|+++||+.+|+++..+..+.+..
T Consensus 9 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 445555566666778999999999999999999998754
No 142
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=66.78 E-value=6.2 Score=43.00 Aligned_cols=49 Identities=18% Similarity=0.155 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhc-----ccchhHHHHHHHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQF-----DVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l-----~is~~~v~~~~~rAl~kLr 625 (1432)
.||++|.+||.+- ..+.|...|.++|++.+ +++..+|+.+.++.++||.
T Consensus 176 ~LT~rE~~iL~~l-~~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~ 229 (250)
T 3r0j_A 176 SLSPTEFTLLRYF-VINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKID 229 (250)
T ss_dssp CCCHHHHHHHHHH-HHTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHH-HHCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhc
Confidence 4999999999874 45556788999999998 7899999988888777774
No 143
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=66.12 E-value=4.9 Score=42.39 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHh--hcccCCCCcHHHHHhhcccchhHHH
Q psy15215 576 SLTPRESKVLRMRF--GIEMSSDHTLEEVGKQFDVTRERIR 614 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~--~~~~~~~~t~~EIa~~l~is~~~v~ 614 (1432)
.||++|++||..-. ....|.+-|..|||+.+|+|..+|.
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~ 42 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGAL 42 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHH
Confidence 59999999997753 3344556799999999999988765
No 144
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=65.96 E-value=14 Score=31.57 Aligned_cols=56 Identities=9% Similarity=0.098 Sum_probs=42.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCC----CHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhh
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDH----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYY 1421 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~----t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~ 1421 (1432)
.+|+.+..+|.-.|......+| .-.++|..+|+|...|+.+....+.+.++++...
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 5788899999888873332333 4789999999999999999999999999876443
No 145
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=65.31 E-value=11 Score=35.67 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=40.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhcccC-CCCCCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1356 MRSVVKDILNSLTPRESKVLRMRFGIEM-SSDHTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1356 ~~~~l~~~L~~L~~rer~Vl~lr~~~~~-~~~~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
+...|+..+..||+.|+.|...-.-.-. -...|..|+|+..|||..+|-+.-+
T Consensus 4 i~~~I~~~~~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~k 57 (107)
T 3iwf_A 4 ILYKIDNQYPYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSK 57 (107)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHH
Confidence 3467888899999999999865443211 1346999999999999999986544
No 146
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=65.14 E-value=13 Score=35.40 Aligned_cols=51 Identities=12% Similarity=0.256 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccc-CCCCcHHHHHhhcccchhHHHHHH
Q psy15215 567 RSVVKDILNSLTPRESKVLRMRFGIEM-SSDHTLEEVGKQFDVTRERIRQIE 617 (1432)
Q Consensus 567 ~~~l~~~L~~L~~rer~Vl~lr~~~~~-~~~~t~~EIa~~l~is~~~v~~~~ 617 (1432)
...|...+..||+.|++|.....-.-. -...|..|+|+..|+|..+|.+.-
T Consensus 9 ~~~i~~~~~~ls~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~ 60 (111)
T 2o3f_A 9 LAIIQSMXHXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLC 60 (111)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHH
Confidence 456777889999999999865543200 013499999999999999997543
No 147
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=64.48 E-value=4.5 Score=38.69 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=24.4
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQ 615 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~ 615 (1432)
.|+.| .+|+.|- - .|+|+.|||+.+|+|..||.+
T Consensus 61 aLs~R-~eV~klL-~----~G~syreIA~~~g~S~aTIsR 94 (119)
T 3kor_A 61 SLSQR-LQVAKMI-K----QGYTYATIEQESGASTATISR 94 (119)
T ss_dssp HHHHH-HHHHHHH-H----HTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHH-HHHHHHH-H----cCCCHHHHHHHHCCCHHHHHH
Confidence 34444 4555552 2 345999999999999999974
No 148
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=64.05 E-value=6.5 Score=36.19 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1369 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1369 ~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
+|...|+.+..-.+. |..+||+.+|||..||+..+...
T Consensus 7 ~R~~~I~~~l~~~~~----ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 7 ERTIKIGKYIVETKK----TVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp HHHHHHHHHHHHHCC----CHHHHHHHHTSCHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHcCC----CHHHHHHHHCCCHHHHHHHHcCC
Confidence 455556555443334 99999999999999999988753
No 149
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=63.83 E-value=25 Score=32.01 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1368 TPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1368 ~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
++....||.+- . .+.|..|||+.+|+|+.+|++.+..
T Consensus 30 ~~~r~~Il~~L-~----~~~~~~eLa~~l~is~~tv~~~L~~ 66 (96)
T 1y0u_A 30 NPVRRKILRML-D----KGRSEEEIMQTLSLSKKQLDYHLKV 66 (96)
T ss_dssp CHHHHHHHHHH-H----TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHH-c----CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 46666677654 2 2469999999999999999976543
No 150
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=63.63 E-value=3.9 Score=41.49 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.++..++.-+...+-.|. |..+||+.||||+.||+.++.+
T Consensus 25 ~~s~e~r~~ii~l~~~G~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLAHQGV----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHHHHTC----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 466666654444444555 9999999999999999999875
No 151
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=63.51 E-value=65 Score=29.76 Aligned_cols=39 Identities=8% Similarity=0.006 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHc
Q psy15215 1279 ISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIA 1317 (1432)
Q Consensus 1279 ~~~~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~ 1317 (1432)
+.++...+.+....++|.++||+.+|+|+..+..+.+..
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 445556666677788999999999999999999998754
No 152
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=62.36 E-value=49 Score=30.64 Aligned_cols=39 Identities=5% Similarity=0.084 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHc
Q psy15215 1279 ISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIA 1317 (1432)
Q Consensus 1279 ~~~~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~ 1317 (1432)
+.++...+.+..+.++|+++||+.+|+|+..+..+.+..
T Consensus 7 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 7 IQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345555666677788999999999999999999998754
No 153
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=61.85 E-value=6.7 Score=38.49 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=31.5
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 619 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~r 619 (1432)
.|++.++..+...+..|. |..+||+.+|+|+.+|.....+
T Consensus 6 ~~s~~~r~~i~~~~~~G~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 6 ALSDTERAQLDVMKLLNV----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCHHHHHHHHHHHHTTC----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHc
Confidence 477777776665565555 9999999999999999876654
No 154
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=61.17 E-value=20 Score=35.03 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=37.7
Q ss_pred HHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1358 SVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1358 ~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
..+...+. .|++.+..||..-+ ..+.|..+||+.+|+|+++|+..+.+-.
T Consensus 24 ~~~~~~~~~~~l~~~~~~iL~~l~----~~~~~~~ela~~l~~s~~tvs~~l~~Le 75 (146)
T 2gxg_A 24 RELNRRLGELNLSYLDFLVLRATS----DGPKTMAYLANRYFVTQSAITASVDKLE 75 (146)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT----TSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHh----cCCcCHHHHHHHhCCCchhHHHHHHHHH
Confidence 34444554 49999999987765 2356999999999999999987665443
No 155
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=61.03 E-value=11 Score=37.11 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.|++.+..||..-+..+ .|..|||+.+|+|+++|++++.+-
T Consensus 35 ~lt~~~~~iL~~l~~~~----~t~~eLa~~l~~s~~tvs~~l~~L 75 (146)
T 3tgn_A 35 ALTNTQEHILMLLSEES----LTNSELARRLNVSQAAVTKAIKSL 75 (146)
T ss_dssp CCCHHHHHHHHHHTTCC----CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCC----CCHHHHHHHHCCCHHHHHHHHHHH
Confidence 47888888887665433 699999999999999999766543
No 156
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=60.85 E-value=11 Score=37.39 Aligned_cols=42 Identities=10% Similarity=0.168 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.|++.++.||.+-... ...|..|||+.+|+|+++|+.++++-
T Consensus 2 ~ld~~d~~il~~L~~~---~~~s~~ela~~lg~s~~tv~~~l~~L 43 (144)
T 2cfx_A 2 KLDQIDLNIIEELKKD---SRLSMRELGRKIKLSPPSVTERVRQL 43 (144)
T ss_dssp CCCHHHHHHHHHHHHC---SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3788888888754322 34699999999999999998776543
No 157
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=60.68 E-value=19 Score=35.02 Aligned_cols=55 Identities=13% Similarity=0.232 Sum_probs=41.0
Q ss_pred HHHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1355 SMRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1355 ~~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.+...+...+. .||+.+-.||..-+..+ +.+.|..+||+.+|+|+++|.+.+.+-
T Consensus 15 ~~~~~~~~~~~~~~lt~~~~~vL~~l~~~~-~~~~t~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3eco_A 15 EMKQKADQKLEQFDITNEQGHTLGYLYAHQ-QDGLTQNDIAKALQRTGPTVSNLLRNL 71 (139)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHHHHST-TTCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 34455555565 49999999998766543 136699999999999999998766553
No 158
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=60.46 E-value=18 Score=33.94 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=33.6
Q ss_pred HHHHHHhc-CCHHHHHHHHHHhhcc--cCCCCcHHHHHhhcccchhHHHH
Q psy15215 569 VVKDILNS-LTPRESKVLRMRFGIE--MSSDHTLEEVGKQFDVTRERIRQ 615 (1432)
Q Consensus 569 ~l~~~L~~-L~~rer~Vl~lr~~~~--~~~~~t~~EIa~~l~is~~~v~~ 615 (1432)
.+..++.- +||.|+.-+.-|+-+- +..|+|+.+|++.+|+|..+|.+
T Consensus 28 e~~~ffedL~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsR 77 (107)
T 3frw_A 28 ECYTFFEDVCTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISR 77 (107)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHH
Confidence 34444543 7888887777666532 23456999999999999999973
No 159
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=60.35 E-value=18 Score=34.98 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=39.0
Q ss_pred HHHHHHHHHc-cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1356 MRSVVKDILN-SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1356 ~~~~l~~~L~-~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
....+...+. .|++.+..||..-+..+ +.|..+||+.+|+|+++|.+.+.+-
T Consensus 24 ~~~~~~~~~~~~l~~~~~~iL~~l~~~~---~~t~~ela~~l~~~~~tvs~~l~~L 76 (140)
T 2nnn_A 24 YAALFANGIGNGLTPTQWAALVRLGETG---PCPQNQLGRLTAMDAATIKGVVERL 76 (140)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHHHHHHS---SBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4445555555 79999999887755322 5699999999999999998766553
No 160
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=60.33 E-value=8.1 Score=35.34 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHhcc-cCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGI-EMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~-~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.|+.++..||...+.. +.+...|..+||+.+|+++++|.+++.+-
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 54 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKF 54 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3888998888765533 22234699999999999999999876554
No 161
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=60.26 E-value=9.4 Score=36.45 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 619 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~r 619 (1432)
.+++.++.-+...+..|. |..+||+.||+|+.+|+.+..+
T Consensus 17 ~~s~~~r~~i~~~~~~g~----s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADGI----RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHHTTC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 466666654444444454 9999999999999999877654
No 162
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=59.67 E-value=24 Score=34.22 Aligned_cols=55 Identities=7% Similarity=0.100 Sum_probs=40.1
Q ss_pred HHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1356 MRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1356 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
+...+...+. .|++.+..||..-+..+ +.+.|..+||+.+|+|+++|.+.+.+-.
T Consensus 19 ~~~~~~~~~~~~~lt~~~~~iL~~l~~~~-~~~~~~~ela~~l~~~~~tvs~~l~~Le 75 (141)
T 3bro_A 19 MSTRFDIFAKKYDLTGTQMTIIDYLSRNK-NKEVLQRDLESEFSIKSSTATVLLQRME 75 (141)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTT-TSCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCC-CCCcCHHHHHHHHCCCcchHHHHHHHHH
Confidence 3445555554 49999999887766443 2356999999999999999987665443
No 163
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=59.58 E-value=6.3 Score=41.69 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=31.8
Q ss_pred ccCCHHHHHHHHHHhcccCCCCC--CHHHHHHHhCCC-HHHHHHHHHH
Q psy15215 1365 NSLTPRESKVLRMRFGIEMSSDH--TLEEVGKQFDVT-RERIRQIEAK 1409 (1432)
Q Consensus 1365 ~~L~~rer~Vl~lr~~~~~~~~~--t~~EIa~~l~vs-~~~Vrq~~~r 1409 (1432)
..||++|+.++..---.-...++ |..|+|+.+|+| +++|++++.+
T Consensus 2 ~~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~ 49 (202)
T 1jhf_A 2 KALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKA 49 (202)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHH
Confidence 36899988876432111011244 999999999999 9999998764
No 164
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=59.53 E-value=12 Score=37.53 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.|++.++.||.+-... ...|..|||+.+|+|+++|++++++=
T Consensus 4 ~ld~~~~~il~~L~~~---~~~s~~ela~~lg~s~~tv~~~l~~L 45 (151)
T 2cyy_A 4 PLDEIDKKIIKILQND---GKAPLREISKITGLAESTIHERIRKL 45 (151)
T ss_dssp CCCHHHHHHHHHHHHC---TTCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4788888888754322 34699999999999999999876554
No 165
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=59.30 E-value=15 Score=36.75 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=32.9
Q ss_pred ccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1365 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1365 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
..|++.++.||.+-... ...|..|||+.+|+|+.+|++++++-
T Consensus 5 ~~ld~~d~~il~~L~~~---~~~s~~ela~~lg~s~~tv~~~l~~L 47 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSEN---SRLTYRELADILNTTRQRIARRIDKL 47 (151)
T ss_dssp -CCCHHHHHHHHHHHHC---TTCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35889999988754322 35699999999999999998776543
No 166
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=58.72 E-value=6.7 Score=33.45 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=20.4
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|+.+||+..|||+.||+.+++.
T Consensus 2 T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 8999999999999999998874
No 167
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=58.36 E-value=13 Score=37.32 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
.|++.++.||.+-... ...|..|||+.+|+|+++|++++++-.
T Consensus 5 ~ld~~d~~il~~L~~~---~~~s~~ela~~lg~s~~tv~~~l~~L~ 47 (152)
T 2cg4_A 5 LIDNLDRGILEALMGN---ARTAYAELAKQFGVSPETIHVRVEKMK 47 (152)
T ss_dssp CCCHHHHHHHHHHHHC---TTSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4788888888754322 346999999999999999998766543
No 168
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=58.26 E-value=18 Score=35.54 Aligned_cols=50 Identities=8% Similarity=0.214 Sum_probs=36.8
Q ss_pred HHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1358 SVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1358 ~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
..+...+. .|++.+..|+.+-+..+ .+.|..|||+.+|+|+++|..++.+
T Consensus 13 ~~~~~~~~~~gl~~~~~~il~~L~~~~--~~~t~~ela~~l~~~~stvs~~l~~ 64 (152)
T 1ku9_A 13 ELFSELAKIHGLNKSVGAVYAILYLSD--KPLTISDIMEELKISKGNVSMSLKK 64 (152)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHCS--SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHcC--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33444443 59999999987764322 3579999999999999999876654
No 169
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=58.06 E-value=78 Score=28.88 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHHHc
Q psy15215 1281 RISRQILQETGS-EPDPSVIAIKMEMPEEKIRKIMKIA 1317 (1432)
Q Consensus 1281 ~~~~~~~~~~g~-~pt~~eia~~~~~~~~~v~~~~~~~ 1317 (1432)
++...+.+.... ++|+++||+.+|+|+..+..+.+..
T Consensus 6 ~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 6 LIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344445555665 7899999999999999999998754
No 170
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=57.80 E-value=13 Score=36.37 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=33.3
Q ss_pred HccCCHHHHHHHHHHhcc-cCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1364 LNSLTPRESKVLRMRFGI-EMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1364 L~~L~~rer~Vl~lr~~~-~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
+..|++.+..+|..-+.. ..+.+.|..+||+.+|+|+++|++.+++-
T Consensus 8 ~~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~L 55 (139)
T 2x4h_A 8 MSNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHL 55 (139)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHH
Confidence 346898888887764432 22346799999999999999999766543
No 171
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=57.77 E-value=58 Score=30.06 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHHHc
Q psy15215 489 ISRISRQILQETG-SEPDPSVIAIKMEMPEEKIRKIMKIA 527 (1432)
Q Consensus 489 ~~r~~~~~~~~~g-~~pt~~eia~~~~~~~~~v~~~~~~~ 527 (1432)
+.++...+.+... .++|.++||+.+|+++..+..+.+..
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555556666777 78999999999999999999987643
No 172
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=57.63 E-value=23 Score=33.02 Aligned_cols=46 Identities=11% Similarity=0.266 Sum_probs=31.7
Q ss_pred HHHHHccCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1360 VKDILNSLT-PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1360 l~~~L~~L~-~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+...+..|. +....||.+-.. .+.|..|||+.+|+|+++|++.+++
T Consensus 16 ~~~~~~~l~~~~r~~IL~~L~~----~~~~~~ela~~l~is~stvs~~L~~ 62 (106)
T 1r1u_A 16 VTEIFKALGDYNRIRIMELLSV----SEASVGHISHQLNLSQSNVSHQLKL 62 (106)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHH----CCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344444444 555666665432 2459999999999999999976654
No 173
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=57.56 E-value=13 Score=37.72 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.|++.++.||.+-... ...|..|||+.+|+|+.+|++++.+-
T Consensus 7 ~ld~~~~~il~~L~~~---~~~s~~ela~~lg~s~~tv~~~l~~L 48 (162)
T 2p5v_A 7 TLDKTDIKILQVLQEN---GRLTNVELSERVALSPSPCLRRLKQL 48 (162)
T ss_dssp CCCHHHHHHHHHHHHC---TTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4888999888764322 24699999999999999999876553
No 174
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=57.54 E-value=9.1 Score=36.00 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1367 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
+.+....|+...+-.| ...|..|||+.||+|+++|++.+.
T Consensus 16 ~~~~~l~Il~~l~~~g--~~~s~~eLa~~lgvs~~tV~~~L~ 55 (110)
T 1q1h_A 16 LGDDVIDVLRILLDKG--TEMTDEEIANQLNIKVNDVRKKLN 55 (110)
T ss_dssp SCSTTHHHHHHHHHHC--SCBCHHHHHHTTTSCHHHHHHHHH
T ss_pred cChHHHHHHHHHHHcC--CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4456666776654322 235999999999999999986544
No 175
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=57.26 E-value=14 Score=33.22 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=25.8
Q ss_pred CCHHHH-HHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHH
Q psy15215 577 LTPRES-KVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 577 L~~rer-~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
.++..+ .++.+ |-.|. |..+||+.+|||+.+|.++..
T Consensus 23 ys~e~k~~~v~~-~~~g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 23 LTPRDKIHAIQR-IHDGE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CCHHHHHHHHHH-HHHTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHCCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 455443 34443 33344 999999999999999987654
No 176
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=57.05 E-value=14 Score=36.97 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.|++.++.||.+-... ...|..|||+.+|+|+++|++++++-
T Consensus 4 ~ld~~~~~iL~~L~~~---~~~s~~ela~~lg~s~~tv~~~l~~L 45 (150)
T 2w25_A 4 ALDDIDRILVRELAAD---GRATLSELATRAGLSVSAVQSRVRRL 45 (150)
T ss_dssp CCCHHHHHHHHHHHHC---TTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4888999888754322 34699999999999999998776553
No 177
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=56.76 E-value=19 Score=34.65 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=35.1
Q ss_pred HHhcCCHHHHHHHHHHhhcccCCC-CcHHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 573 ILNSLTPRESKVLRMRFGIEMSSD-HTLEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 573 ~L~~L~~rer~Vl~lr~~~~~~~~-~t~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
..-.|++.+..|+..-...+ .+ .|..|||+.+|+|+++|. +++.+|.
T Consensus 20 ~~~gLt~~e~~il~~L~~~~--~~~~t~~eLa~~l~~s~sTV~----r~L~~L~ 67 (123)
T 3r0a_A 20 CALNLTKADLNVMKSFLNEP--DRWIDTDALSKSLKLDVSTVQ----RSVKKLH 67 (123)
T ss_dssp HHHTCCHHHHHHHHHHHHST--TCCEEHHHHHHHHTSCHHHHH----HHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHCC--CCCcCHHHHHHHHCcCHHHHH----HHHHHHH
Confidence 44569999999987654322 23 599999999999999997 5555553
No 178
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=56.39 E-value=15 Score=33.84 Aligned_cols=42 Identities=12% Similarity=0.301 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.|++.+..||..-... .+.|..|||+.+|+|+++|++++.+=
T Consensus 17 ~l~~~~~~il~~l~~~---~~~s~~ela~~l~is~~tv~~~l~~L 58 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLER---GGMRVSEIARELDLSARFVRDRLKVL 58 (109)
T ss_dssp CCCHHHHHHHHHHHHH---CCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4889998888765421 24699999999999999998766543
No 179
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=56.34 E-value=9.6 Score=34.08 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=19.0
Q ss_pred CcHHHHHhhcccchhHHHHHHH
Q psy15215 597 HTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 597 ~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
.|..|||+.||+|+.+|+++..
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~ 52 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALY 52 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 5999999999999999985443
No 180
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=56.30 E-value=18 Score=31.70 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=28.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1357 RSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1357 ~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.+.+..++..|++.+. -|..+||++||+|...|.+.+.+
T Consensus 14 ~~~v~~~i~~L~~~~~--------------~Ta~~IAkkLg~sK~~vNr~LY~ 52 (75)
T 1sfu_A 14 FSLVKKEVLSLNTNDY--------------TTAISLSNRLKINKKKINQQLYK 52 (75)
T ss_dssp HHHHHHHHHTSCTTCE--------------ECHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcc--------------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 4566666667765432 49999999999998877765554
No 181
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=56.30 E-value=1.5e+02 Score=30.66 Aligned_cols=173 Identities=13% Similarity=0.130 Sum_probs=86.9
Q ss_pred HHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Q psy15215 1200 LRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKI 1279 (1432)
Q Consensus 1200 ~~lV~~ia~~y~~~~~~~~DLiQEg~igl~kav~kfd~~~g~~Fstya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~ 1279 (1432)
...+..++.++ +++ +-+.+.-..+++-+.....-+|.+....+...+.-++.
T Consensus 13 ~~~I~~~~~~L---~L~--~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr----------------------- 64 (200)
T 1ais_B 13 LSELDRITAQL---KLP--RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACR----------------------- 64 (200)
T ss_dssp HHHHHHHHHHH---TCC--HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHc---CCC--HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHH-----------------------
Confidence 34455555554 222 55666666666666555555665544444444433331
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCC-CCCCCCcCcccccCCCCChHHHHHHHHHHH
Q psy15215 1280 SRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVG-DDEDSHLGDFIEDENMLAPSDAALNASMRS 1358 (1432)
Q Consensus 1280 ~~~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~~~~Sl~~~~~-~~~~~~~~d~i~d~~~~~p~~~~~~~~~~~ 1358 (1432)
..|.+.|..||+...+++..++.+..+.......++.+.. .+....+..+...-. .+ .+ .......
T Consensus 65 ---------~~~~p~~l~di~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~-l~-~~--v~~~A~~ 131 (200)
T 1ais_B 65 ---------LLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELG-LS-EK--VRRRAIE 131 (200)
T ss_dssp ---------HHTCCCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHT-CC-HH--HHHHHHH
T ss_pred ---------HcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcC-CC-HH--HHHHHHH
Confidence 1244567888888888888888777654433333333221 000001111111001 11 11 1122233
Q ss_pred HHHHHHc-----cCCHHHHH--HHHH-HhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhh
Q psy15215 1359 VVKDILN-----SLTPRESK--VLRM-RFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415 (1432)
Q Consensus 1359 ~l~~~L~-----~L~~rer~--Vl~l-r~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr 1415 (1432)
.++.++. .-+|.--. .|.+ ... .|.+.|.+||+...|||..+|++....-.+.|.
T Consensus 132 i~~~~~~~~~~~gr~P~~iAaAaly~A~~~--~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 132 ILDEAYKRGLTSGKSPAGLVAAALYIASLL--EGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHTTCCTTSCHHHHHHHHHHHHHHH--TTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCcccCCCHHHHHHHHHHHHHHH--hCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 3333332 12333222 2211 211 234669999999999999999988776666553
No 182
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=56.13 E-value=9.1 Score=35.91 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=30.6
Q ss_pred CCHHHHH-HHHHHhccc---CCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1367 LTPRESK-VLRMRFGIE---MSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1367 L~~rer~-Vl~lr~~~~---~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
.|+..+. ++.+.+-.+ ...+.|..+||..||||+++|+++..+..
T Consensus 7 ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 7 FSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5555553 555544322 00013899999999999999999988754
No 183
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=55.83 E-value=8.3 Score=33.54 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=20.3
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+..++|+.+|||+.+|++++..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 6999999999999999999764
No 184
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=55.50 E-value=26 Score=31.91 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=30.5
Q ss_pred HHHHHccC-CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1360 VKDILNSL-TPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1360 l~~~L~~L-~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+..++..| .|....||.+-. . .+.|..|||+.+|+|+++|++.+.+
T Consensus 13 ~~~~~~~l~~~~r~~Il~~L~--~--~~~~~~ela~~l~is~~tvs~~L~~ 59 (98)
T 3jth_A 13 AVVLLKAMANERRLQILCMLH--N--QELSVGELCAKLQLSQSALSQHLAW 59 (98)
T ss_dssp HHHHHHHHCSHHHHHHHHHTT--T--SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh--c--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33444444 355555654432 2 3579999999999999999866543
No 185
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=55.12 E-value=24 Score=33.24 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccc-CCCCcHHHHHhhcccchhHHHH
Q psy15215 566 MRSVVKDILNSLTPRESKVLRMRFGIEM-SSDHTLEEVGKQFDVTRERIRQ 615 (1432)
Q Consensus 566 ~~~~l~~~L~~L~~rer~Vl~lr~~~~~-~~~~t~~EIa~~l~is~~~v~~ 615 (1432)
+...|...+..||+.|+.|...-.-... -...|..|+|+..|+|..+|.+
T Consensus 4 i~~~I~~~~~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~R 54 (107)
T 3iwf_A 4 ILYKIDNQYPYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIR 54 (107)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHH
Confidence 3467888899999999999865443210 1246999999999999999874
No 186
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=55.06 E-value=20 Score=35.05 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=37.3
Q ss_pred HHHHHHHHHcc----CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1356 MRSVVKDILNS----LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1356 ~~~~l~~~L~~----L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
+...+...+.. |++.+-.||..-+..+ +.|..+||+.+|+|+++|.+.+.+-.
T Consensus 20 ~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~~---~~t~~eLa~~l~~~~~tvs~~l~~L~ 76 (142)
T 3ech_A 20 VRTRIQSELDCQRLDLTPPDVHVLKLIDEQR---GLNLQDLGRQMCRDKALITRKIRELE 76 (142)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT---TCCHHHHHHHHC---CHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHhCC---CcCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44556666654 9999999988765432 56999999999999999997765543
No 187
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=55.02 E-value=12 Score=36.74 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1367 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
|++.++.||..-.. +...|..|||+.+|+|+.+|++++.+-.
T Consensus 2 ld~~~~~il~~L~~---~~~~~~~ela~~lg~s~~tv~~~l~~L~ 43 (141)
T 1i1g_A 2 IDERDKIILEILEK---DARTPFTEIAKKLGISETAVRKRVKALE 43 (141)
T ss_dssp CCSHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 67778888764322 1345999999999999999987765543
No 188
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=54.95 E-value=16 Score=37.18 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1367 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|.+.++.||.+--.. ...|+.|||+.+|+|+.+|+.++.+
T Consensus 1 lD~~d~~il~~L~~~---~~~s~~~la~~lg~s~~tv~~rl~~ 40 (162)
T 3i4p_A 1 MDRLDRKILRILQED---STLAVADLAKKVGLSTTPCWRRIQK 40 (162)
T ss_dssp CCHHHHHHHHHHTTC---SCSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHC---CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 456777887664322 3459999999999999999977655
No 189
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=54.48 E-value=15 Score=33.71 Aligned_cols=39 Identities=8% Similarity=0.193 Sum_probs=27.9
Q ss_pred CCHHHHH-HHHHHhhc-ccCCCCcHHHHHhhcccchhHHHHHHHH
Q psy15215 577 LTPRESK-VLRMRFGI-EMSSDHTLEEVGKQFDVTRERIRQIEAK 619 (1432)
Q Consensus 577 L~~rer~-Vl~lr~~~-~~~~~~t~~EIa~~l~is~~~v~~~~~r 619 (1432)
.|+..+. ++.+..-. |. |..+||..+|||+++|.++..+
T Consensus 6 ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 6 YSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 5665554 44444322 44 9999999999999999887654
No 190
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=54.48 E-value=21 Score=35.38 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=40.3
Q ss_pred HHHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1355 SMRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1355 ~~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.+...+...|. .||..|-.||.+-+... +.+.|..+||+.+++++++|..++.+-
T Consensus 19 ~l~~~~~~~l~~~gLt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~~~~~tvs~~v~~L 75 (147)
T 4b8x_A 19 ILLGEVDAVVKPYGLTFARYEALVLLTFSK-SGELPMSKIGERLMVHPTSVTNTVDRL 75 (147)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHHHTSG-GGEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHCC-CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455666665 49999999987655322 124599999999999999998776553
No 191
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=54.29 E-value=16 Score=37.63 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.|++.++.||.+-... ...|+.|||+.+|+|+.+|++++.+-
T Consensus 24 ~ld~~d~~IL~~L~~~---~~~s~~eLA~~lglS~~tv~~rl~~L 65 (171)
T 2e1c_A 24 PLDEIDKKIIKILQND---GKAPLREISKITGLAESTIHERIRKL 65 (171)
T ss_dssp CCCHHHHHHHHHHHHC---TTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5899999988764322 24699999999999999999876543
No 192
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=54.28 E-value=27 Score=33.69 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=39.2
Q ss_pred HHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1356 MRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1356 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
+...+...+. .|++.+..||..-+.. .+.|..|||+.+|+|+++|++.+.+-
T Consensus 14 ~~~~~~~~~~~~~l~~~~~~iL~~l~~~---~~~~~~ela~~l~~s~~tvs~~l~~L 67 (138)
T 3bpv_A 14 HRVFIGRELGHLNLTDAQVACLLRIHRE---PGIKQDELATFFHVDKGTIARTLRRL 67 (138)
T ss_dssp HHHHHHHHSGGGTCCHHHHHHHHHHHHS---TTCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHc---CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555555 4999999988776542 35699999999999999998766553
No 193
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=54.25 E-value=13 Score=36.96 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 619 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~r 619 (1432)
.+++.++.-+...+..|. |..+||+.||+|+.+|+.+..+
T Consensus 32 ~~s~e~r~~iv~~~~~G~----s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 32 PLPDVVRQRIVELAHQGV----RPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp CCCHHHHHHHHHHHHTTC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 366666654444444454 9999999999999999987765
No 194
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=53.99 E-value=66 Score=30.04 Aligned_cols=39 Identities=8% Similarity=0.120 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHc
Q psy15215 489 ISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIA 527 (1432)
Q Consensus 489 ~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~ 527 (1432)
+.++...+.+....++|.++||+.+|+++..+..+.+..
T Consensus 9 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 444555556666788999999999999999999997654
No 195
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=53.72 E-value=14 Score=35.73 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=32.2
Q ss_pred cCCHHHHH-HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy15215 1366 SLTPRESK-VLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRK 1413 (1432)
Q Consensus 1366 ~L~~rer~-Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~k 1413 (1432)
.+|+.++. |+.+.+-.|. .+..+||+.||||+++|+.+++..-..
T Consensus 7 ~~t~e~K~~iv~~~~~~g~---~~~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEENPD---LRKGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CCCHHHHHHHHHHHHHCTT---SCHHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred eCCHHHHHHHHHHHHHCCC---CcHHHHHHHhCCCHHHHHHHHhchhhh
Confidence 47777774 5555544343 245599999999999999998765443
No 196
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=53.46 E-value=56 Score=31.43 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHc
Q psy15215 1279 ISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIA 1317 (1432)
Q Consensus 1279 ~~~~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~ 1317 (1432)
+.++...+.+....++|.++||+.+|+++..+..+.+..
T Consensus 13 i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 13 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 445555666667778999999999999999999998754
No 197
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=53.21 E-value=33 Score=33.16 Aligned_cols=43 Identities=5% Similarity=0.033 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
.|++.+..||..-+.. .+.|..+||+.+|+|+++|++.+.+-.
T Consensus 28 ~l~~~~~~iL~~l~~~---~~~~~~ela~~l~is~~~vs~~l~~L~ 70 (142)
T 3bdd_A 28 GISLTRYSILQTLLKD---APLHQLALQERLQIDRAAVTRHLKLLE 70 (142)
T ss_dssp SSCHHHHHHHHHHHHH---CSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC---CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6999999988776542 246999999999999999987665543
No 198
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=52.72 E-value=38 Score=27.89 Aligned_cols=52 Identities=19% Similarity=0.262 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCC----CHHHHHHHhCCCHHHHHHHHHHHHHHhhCc
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDH----TLEEVGKQFDVTRERIRQIEAKALRKLRHP 1417 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~----t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~ 1417 (1432)
.+|+.+..+|.-.|......+| .-.++|..+|+|...|+.+......+.|+.
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4788888999888876321222 366899999999999999999888887763
No 199
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=52.61 E-value=37 Score=30.19 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHhcccCCCCC----CHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHHhhhcc
Q psy15215 1367 LTPRESKVLRMRFGIEMSSDH----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIFLEG 1429 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~~~~----t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~~~~~~ 1429 (1432)
+|+.+..+|.-.|......+| .-.++|..+|+|...|+.+....+.+.|+...+..+...+.+
T Consensus 9 ft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~~~~~~~~~ 75 (83)
T 1le8_B 9 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPELADLLSG 75 (83)
T ss_dssp CCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCHHHHTTSSS
T ss_pred CCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCHHHHhhccC
Confidence 788899999888875222222 456899999999999999999999999998776666655443
No 200
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=52.12 E-value=27 Score=36.28 Aligned_cols=50 Identities=12% Similarity=0.288 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 566 MRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 566 ~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
+...+...+..||+.+..||..-+... +.+.|..+||+.+|+++++|...
T Consensus 28 ~~~~~~~~~~~lt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is~~tvs~~ 77 (189)
T 3nqo_A 28 IQIEGDKYFGILTSRQYMTILSILHLP-EEETTLNNIARKMGTSKQNINRL 77 (189)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCCHHHHHHH
Confidence 445566677789999999998766321 13459999999999999998853
No 201
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=52.07 E-value=24 Score=31.10 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQF-----DVTRERIRQIEA 1408 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l-----~vs~~~Vrq~~~ 1408 (1432)
.++++...||.+-...+ +.+.|.+||++.+ ++|..||...+.
T Consensus 14 ~~t~~r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~is~~TVyR~L~ 60 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEIGLATVYRVLN 60 (83)
T ss_dssp CCCHHHHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHH
Confidence 48898888887654321 1467999999999 999999986554
No 202
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=52.06 E-value=28 Score=32.05 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=30.3
Q ss_pred HHHHHccCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1360 VKDILNSLT-PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1360 l~~~L~~L~-~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+..++..|. |.-..||.+-.. .+.|..|||+.+|+|+++|++.+.+
T Consensus 13 ~~~~~~~l~~~~r~~Il~~L~~----~~~~~~ela~~l~is~~tvs~~L~~ 59 (102)
T 3pqk_A 13 VANLLKTLSHPVRLMLVCTLVE----GEFSVGELEQQIGIGQPTLSQQLGV 59 (102)
T ss_dssp HHHHHHHHCSHHHHHHHHHHHT----CCBCHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344444444 445555554331 2479999999999999999876543
No 203
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=52.05 E-value=13 Score=31.31 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=21.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.|..++|+.+|||+++|+++++-
T Consensus 17 lsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 17 MTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 39999999999999999999864
No 204
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=52.00 E-value=18 Score=35.91 Aligned_cols=41 Identities=10% Similarity=0.250 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1367 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
|++.+..||.+-.. +...|..|||+.+|+|+++|++++++=
T Consensus 1 ld~~~~~il~~L~~---~~~~~~~ela~~lg~s~~tv~~~l~~L 41 (150)
T 2pn6_A 1 MDEIDLRILKILQY---NAKYSLDEIAREIRIPKATLSYRIKKL 41 (150)
T ss_dssp CCHHHHHHHHHHTT---CTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45677777765332 235699999999999999998776543
No 205
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=51.98 E-value=25 Score=34.28 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=39.2
Q ss_pred HHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1356 MRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1356 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
+...+...+. .|++.+..||..-+.. +.+.|..+||+.+|+|+++|+..+.+-.
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~iL~~l~~~--~~~~t~~~la~~l~~s~~~vs~~l~~L~ 77 (146)
T 2fbh_A 22 WRAELDRRLSHLGLSQARWLVLLHLARH--RDSPTQRELAQSVGVEGPTLARLLDGLE 77 (146)
T ss_dssp HHHHHHHHTGGGCCTTTHHHHHHHHHHC--SSCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHc--CCCCCHHHHHHHhCCChhhHHHHHHHHH
Confidence 3445555554 4899999888766222 2356999999999999999987665543
No 206
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=51.98 E-value=27 Score=34.05 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
.|++.+-.||..-+..+. |..+||+.+|+|+++|.+.+.+-.
T Consensus 34 ~lt~~~~~iL~~l~~~~~----~~~~la~~l~~~~~tvs~~l~~Le 75 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR----SMVYLANRYFVTQSAITAAVDKLE 75 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE----EHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCC----CHHHHHHHHCCChhHHHHHHHHHH
Confidence 699999999877664333 999999999999999997665543
No 207
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=51.87 E-value=78 Score=30.90 Aligned_cols=65 Identities=8% Similarity=0.055 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHc
Q psy15215 455 TYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIA 527 (1432)
Q Consensus 455 tya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~ 527 (1432)
.|..+.+.+.+.+.+.......-++...+..+.-+ ...+.+.|+.+||+.+|++...+..++...
T Consensus 14 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~l--------~~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 78 (150)
T 3fm5_A 14 GFLLSRVGGMVLGAVNKALVPTGLRVRSYSVLVLA--------CEQAEGVNQRGVAATMGLDPSQIVGLVDEL 78 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH--------HHSTTCCCSHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--------HhCCCCcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 55666666677777666555445555444433322 223444599999999999999999998533
No 208
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=51.77 E-value=40 Score=32.45 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=41.0
Q ss_pred HHHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q psy15215 1355 SMRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALR 1412 (1432)
Q Consensus 1355 ~~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~ 1412 (1432)
.+...+...+. .|++.+..||..-+.. .+.|..+||+.+|+|+++|.+.+.+-.+
T Consensus 18 ~~~~~~~~~~~~~~lt~~~~~iL~~l~~~---~~~~~~~la~~l~~~~~tvs~~l~~L~~ 74 (138)
T 1jgs_A 18 KKDRLLNEYLSPLDITAAQFKVLCSIRCA---ACITPVELKKVLSVDLGALTRMLDRLVC 74 (138)
T ss_dssp HHHHHHHHHHTTTTSCHHHHHHHHHHHHH---SSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHhc---CCCCHHHHHHHHCCChHHHHHHHHHHHH
Confidence 34556666665 4999999988776542 2459999999999999999987665443
No 209
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=51.64 E-value=16 Score=33.59 Aligned_cols=39 Identities=10% Similarity=0.174 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1368 TPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1368 ~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+|....||..-... .+.|..|||+.+|+|+++|++.++.
T Consensus 26 ~~~Rl~IL~~l~~~---~~~~~~ela~~l~is~stvs~hL~~ 64 (99)
T 2zkz_A 26 HPMRLKIVNELYKH---KALNVTQIIQILKLPQSTVSQHLCK 64 (99)
T ss_dssp SHHHHHHHHHHHHH---SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHC---CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 46666777332211 2359999999999999999976653
No 210
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=51.46 E-value=14 Score=32.42 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=24.5
Q ss_pred HHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1376 RMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1376 ~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.+|--.|+ |.+++|+.+|||+.+|+++++-
T Consensus 17 ~~R~~~gl----tq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 17 QYRKEKGY----SLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHTTC----CHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHcCC----CHHHHHHHHCcCHHHHHHHHcC
Confidence 34444455 9999999999999999999864
No 211
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=51.43 E-value=32 Score=33.82 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=38.7
Q ss_pred HHHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1355 SMRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1355 ~~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.+...+...+. .|++.|-.||..-+.. +.+.|..+||+.+++|+++|.+.+.+
T Consensus 23 ~~~~~~~~~l~~~glt~~q~~vL~~l~~~--~~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 23 MVLGAVNKALVPTGLRVRSYSVLVLACEQ--AEGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHHHHS--TTCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhC--CCCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 34555566655 4999999988765422 22459999999999999999876554
No 212
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=51.36 E-value=14 Score=30.96 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.|..++|+.+|||+.+|+++++.
T Consensus 15 lsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 15 LNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 39999999999999999998864
No 213
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=51.34 E-value=14 Score=32.78 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.7
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|..++|+.+|||+.+|+++++.
T Consensus 33 sq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 33 TQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 9999999999999999999864
No 214
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=50.70 E-value=10 Score=32.85 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1367 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+++..-.-+ |--.|+ |.+|+|+.+|||+.+|+++++-
T Consensus 11 ~~g~~lr~~--R~~~gl----tq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 11 VAPEFIVKV--RKKLSL----TQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp CCHHHHHHH--HHHTTC----CHHHHHHHHCSCTTHHHHHHTT
T ss_pred CCHHHHHHH--HHHcCC----CHHHHHHHhCcCHHHHHHHHcC
Confidence 444443333 333455 9999999999999999999863
No 215
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=50.60 E-value=21 Score=29.61 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHh-----CCCHHHHHHHHH
Q psy15215 1385 SDHTLEEVGKQF-----DVTRERIRQIEA 1408 (1432)
Q Consensus 1385 ~~~t~~EIa~~l-----~vs~~~Vrq~~~ 1408 (1432)
...|.+||++.| +||..||++.+.
T Consensus 18 ~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 467999999999 999999998877
No 216
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=50.45 E-value=13 Score=30.96 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=20.5
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|..++|+.+|+|+.+|+++++-
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 20 RQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTT
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 9999999999999999998863
No 217
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=50.36 E-value=24 Score=32.46 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=33.2
Q ss_pred HhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHH
Q psy15215 574 LNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKL 624 (1432)
Q Consensus 574 L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kL 624 (1432)
...|++.+..+|...+.. +.+.|..|||+.+|+|+++|+ +.+..|
T Consensus 16 ~~~l~~~~~~~l~~l~~~--~~~~t~~ela~~l~is~~tv~----~~l~~L 60 (109)
T 2d1h_A 16 CYKITDTDVAVLLKMVEI--EKPITSEELADIFKLSKTTVE----NSLKKL 60 (109)
T ss_dssp HHTCCHHHHHHHHHHHHH--CSCEEHHHHHHHHTCCHHHHH----HHHHHH
T ss_pred hhcCCHHHHHHHHHHHHc--CCCCCHHHHHHHHCcCHHHHH----HHHHHH
Confidence 456899988887554421 235699999999999999997 445555
No 218
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=50.15 E-value=13 Score=30.69 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.|.+++|+.+|+|+++|+++++-
T Consensus 15 ~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 15 ISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 39999999999999999999863
No 219
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=50.08 E-value=20 Score=36.79 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=32.2
Q ss_pred HccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1364 LNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1364 L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
...|++.++.||.+-... ...|..|||+.+|+|+++|++++.+
T Consensus 12 ~~~ld~~d~~IL~~L~~~---~~~s~~eLA~~lglS~~tv~~~l~~ 54 (171)
T 2ia0_A 12 EIHLDDLDRNILRLLKKD---ARLTISELSEQLKKPESTIHFRIKK 54 (171)
T ss_dssp --CCCHHHHHHHHHHHHC---TTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345888888888764322 2469999999999999999977654
No 220
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=49.99 E-value=9.9 Score=32.43 Aligned_cols=21 Identities=10% Similarity=0.237 Sum_probs=19.8
Q ss_pred CHHHHHHHhCCCHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
|..++|+.||||+++|++++.
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999873
No 221
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=49.98 E-value=11 Score=34.56 Aligned_cols=45 Identities=11% Similarity=0.044 Sum_probs=34.8
Q ss_pred HccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1364 LNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1364 L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+..|++-|..|+..-+-.+. .+.+.+|||+.++++..+|..++.+
T Consensus 15 ~~~Lt~~q~~Vl~~I~~~g~-~gi~qkeLa~~~~l~~~tvt~iLk~ 59 (91)
T 2dk5_A 15 MKGSDNQEKLVYQIIEDAGN-KGIWSRDVRYKSNLPLTEINKILKN 59 (91)
T ss_dssp CCCSCSSHHHHHHHHHHHCT-TCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHcCC-CCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 46689989888887774332 3569999999999999998765544
No 222
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=49.95 E-value=13 Score=32.72 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=23.9
Q ss_pred HHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1377 MRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1377 lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+|--.|+ |.+|+|+.+|||+.+|+++++-
T Consensus 22 ~R~~~gl----tq~elA~~~gis~~~is~~e~g 50 (83)
T 3f6w_A 22 ARSAAGI----TQKELAARLGRPQSFVSKTENA 50 (83)
T ss_dssp HHHHHTC----CHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHcCC----CHHHHHHHHCcCHHHHHHHHCC
Confidence 3444455 9999999999999999999863
No 223
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=49.89 E-value=13 Score=32.22 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=20.5
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|.+++|+.+|||+++|+++++-
T Consensus 17 sq~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 17 TAKSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTC
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 9999999999999999999863
No 224
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=49.74 E-value=14 Score=34.46 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.2
Q ss_pred HHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1375 LRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1375 l~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
=.+|--.|+ |++++|+.+|||+.+|+++++
T Consensus 42 r~~R~~~gl----TQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 42 KQARLNRDL----TQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HHHHHHTTC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHcCC----CHHHHHHHcCCCHHHHHHHHC
Confidence 345655566 999999999999999999985
No 225
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=49.67 E-value=27 Score=32.70 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=31.1
Q ss_pred HHHccCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1362 DILNSLT-PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1362 ~~L~~L~-~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.++..|. +....||..-. ..+.|..|||+.+|+|+++|++.+.+-
T Consensus 13 ~~~~~l~~~~r~~IL~~L~----~~~~~~~ela~~l~is~~tv~~~l~~L 58 (114)
T 2oqg_A 13 SVFAALSDETRWEILTELG----RADQSASSLATRLPVSRQAIAKHLNAL 58 (114)
T ss_dssp HHHHHTTCHHHHHHHHHHH----HSCBCHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHhCChHHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444443 56666766532 124699999999999999999776543
No 226
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=49.52 E-value=15 Score=31.17 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=20.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.|.+++|+.+|+|+++|+++++-
T Consensus 27 ~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 27 LSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 39999999999999999998864
No 227
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=49.44 E-value=16 Score=44.37 Aligned_cols=115 Identities=10% Similarity=0.176 Sum_probs=61.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHccCCCCCCCCCCCCCCCCcCcccccCCCCChHHHHHHHHHHHHH
Q psy15215 491 RISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVV 570 (1432)
Q Consensus 491 r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~~~~sl~~~~~~~~~~~~~~~i~d~~~~~p~~~~~~~~~~~~l 570 (1432)
+.-..+.+ +...|..+||+.+|+|..+|+.-+........-...+... .-|-.+........ .
T Consensus 22 ~IL~~L~~--~~~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~~---~~Gy~L~~~~~~~~-~----------- 84 (485)
T 3sqn_A 22 RLLEQLLN--VPQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETD---SSGIRLRNQGNAQT-N----------- 84 (485)
T ss_dssp HHHHHHHH--CCSCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEEE---TTEEEEEEC---CT-H-----------
T ss_pred HHHHHHHh--CCCcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEEc---CCEEEEecCcHHHH-H-----------
Confidence 33344443 4458899999999999999999986655443110011100 11111211111011 0
Q ss_pred HHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q psy15215 571 KDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLA 628 (1432)
Q Consensus 571 ~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~~l 628 (1432)
.....+++.+|....+.+..- ..+.|+.++|+.+.||++++.+- ++++++.+
T Consensus 85 -~~~~~~~~~eR~~~Il~~LL~-~~~isi~~Lae~l~VS~sTi~~D----Lk~i~~~L 136 (485)
T 3sqn_A 85 -ELWSLFLPQSISIQLLKELLF-TKELVTTSFLSTSGVSYETLKRH----IKKMNQAL 136 (485)
T ss_dssp -HHHHHHGGGSHHHHHHHHHHH-CSEEEHHHHHHHHTCCHHHHHHH----HHHHHHHH
T ss_pred -HHHHhcCHHHHHHHHHHHHHh-CCCCCHHHHHHHhCCCHHHHHHH----HHHHHHHH
Confidence 011223444444333333332 34779999999999999999844 44454444
No 228
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=49.36 E-value=17 Score=31.27 Aligned_cols=29 Identities=7% Similarity=0.121 Sum_probs=23.8
Q ss_pred HHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1377 MRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1377 lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+|--.|. |..++|+.+|||+++|+++++.
T Consensus 15 ~r~~~g~----sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 15 LITQQNL----TINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp HHHHTTC----CHHHHHHHHTCCHHHHHHHHCT
T ss_pred HHHHcCC----CHHHHHHHHCcCHHHHHHHHcC
Confidence 3443455 9999999999999999999864
No 229
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=49.29 E-value=25 Score=37.09 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=42.4
Q ss_pred cCCeEEEEecchhHHHHhhhCC-----------------------------------CCCeEEEEecCcHHHHHHHHHHH
Q psy15215 728 KSGYVLITEGYMDVIGLSQFGF-----------------------------------FANSSYTCFDGDQAGRRAARRAL 772 (1432)
Q Consensus 728 ~~~~~~~vEG~~D~ia~~~~g~-----------------------------------~~~~i~~~~D~D~aG~~a~~~~~ 772 (1432)
..+.+.|||-.-||+|+.+.|. ..++|||++...--|..-|.=..
T Consensus 92 d~~~iCVVE~~~Dv~aiE~t~~y~G~YhVLgG~iSPldGigP~~L~i~~L~~Ri~~~~v~EVIlAtnpTvEGeaTa~Yi~ 171 (212)
T 3vdp_A 92 DHSTICVVSHPMDVVAMEKVKEYKGVYHVLHGVISPIEGVGPEDIRIKELLERVRDGSVKEVILATNPDIEGEATAMYIA 171 (212)
T ss_dssp EEEEEEEESSHHHHHHHHTTSCCCEEEEECSSCCBTTTTBCGGGTTHHHHHHHHHHSCCSEEEECCCSSHHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHhhCccceEEEecCCccCccCCCCccccCHHHHHHHHhcCCCcEEEEECCCCccHHHHHHHHH
Confidence 3467999999999999999987 46899999999999987776666
Q ss_pred HHhhhhc
Q psy15215 773 EVCLLYA 779 (1432)
Q Consensus 773 ~~~~~~~ 779 (1432)
+++...+
T Consensus 172 ~~Lk~~~ 178 (212)
T 3vdp_A 172 KLLKPFG 178 (212)
T ss_dssp HHHTTTT
T ss_pred HHhhhcC
Confidence 6655443
No 230
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=49.11 E-value=22 Score=34.90 Aligned_cols=52 Identities=6% Similarity=0.108 Sum_probs=36.5
Q ss_pred HHHHHHHH-c--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1357 RSVVKDIL-N--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1357 ~~~l~~~L-~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
...+...+ . .|++.+..||..-+..+ +.|..|||+.+|+|+++|.+.+.+-.
T Consensus 25 ~~~~~~~~~~~~~l~~~~~~iL~~l~~~~---~~t~~ela~~l~~~~~tvs~~l~~Le 79 (148)
T 3nrv_A 25 MLKSSTAYTQKFGIGMTEWRIISVLSSAS---DCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
T ss_dssp HHC----CCGGGTCCHHHHHHHHHHHHSS---SBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHcCC---CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444 2 59999999887765433 56999999999999999997766543
No 231
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=49.02 E-value=18 Score=32.86 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1368 TPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1368 ~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
++.+..||..-.. +.+.|..|||+.+|+|+++|++.+.+
T Consensus 23 ~~~~~~il~~l~~---~~~~s~~ela~~l~is~~tvs~~l~~ 61 (99)
T 3cuo_A 23 HPKRLLILCMLSG---SPGTSAGELTRITGLSASATSQHLAR 61 (99)
T ss_dssp SHHHHHHHHHHTT---CCSEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHh---CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3666667755432 34579999999999999999876654
No 232
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=49.00 E-value=1e+02 Score=28.33 Aligned_cols=39 Identities=5% Similarity=0.084 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHc
Q psy15215 489 ISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIA 527 (1432)
Q Consensus 489 ~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~ 527 (1432)
+.++...+.+..+.++|.++||+.+|+++..+..+.+..
T Consensus 7 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 7 IQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344555666677788999999999999999999987654
No 233
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=48.99 E-value=16 Score=31.45 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.|..++|+.+|||+++|+++++-
T Consensus 24 lsq~~lA~~~gis~~~i~~~e~g 46 (77)
T 2b5a_A 24 VSQEELADLAGLHRTYISEVERG 46 (77)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
Confidence 39999999999999999998863
No 234
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=48.96 E-value=30 Score=33.53 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=29.6
Q ss_pred ccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1365 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1365 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.-+++.+-.-+ |--.|+ |.+++|+.+|+|+.+|+++++-
T Consensus 69 ~~~~~~~l~~~--R~~~gl----sq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 69 ETVAPEFIVKV--RKKLSL----TQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TTCCHHHHHHH--HHHTTC----CHHHHHHHHCSCTTHHHHHHHT
T ss_pred cCCCHHHHHHH--HHHcCC----CHHHHHHHHCCCHHHHHHHHCC
Confidence 34666654444 444456 9999999999999999999973
No 235
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=48.96 E-value=29 Score=34.12 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=38.1
Q ss_pred HHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1357 RSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1357 ~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
...+...+. .|++.+..||..-+..+ +.|..+||+.+|+|+++|++.+.+-.
T Consensus 26 ~~~~~~~~~~~~lt~~~~~iL~~l~~~~---~~t~~ela~~l~~~~~~vs~~l~~Le 79 (152)
T 3bj6_A 26 TAAVERGTLREGVTVGQRAILEGLSLTP---GATAPQLGAALQMKRQYISRILQEVQ 79 (152)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHST---TEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCC---CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444443 59999999887765422 46999999999999999987665543
No 236
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=48.79 E-value=15 Score=32.70 Aligned_cols=29 Identities=14% Similarity=0.386 Sum_probs=23.8
Q ss_pred HHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1377 MRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1377 lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+|--.|+ |.+++|+.+|||+++|+++++-
T Consensus 22 ~R~~~gl----tq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 22 ARLDAGL----TQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp HHHHTTC----CHHHHHHHTTCCHHHHHHHHTT
T ss_pred HHHHcCC----CHHHHHHHhCcCHHHHHHHHCC
Confidence 3444455 9999999999999999999863
No 237
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=48.73 E-value=38 Score=32.01 Aligned_cols=40 Identities=8% Similarity=0.100 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1367 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.++.+..||.+-.- .+.|..+||+.+|+|+++|++.+++-
T Consensus 30 ~~~~~~~il~~L~~----~~~s~~ela~~l~is~stvsr~l~~L 69 (119)
T 2lkp_A 30 ATPSRLMILTQLRN----GPLPVTDLAEAIGMEQSAVSHQLRVL 69 (119)
T ss_dssp CCHHHHHHHHHHHH----CCCCHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH----CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34677777766443 24599999999999999999877653
No 238
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=48.25 E-value=24 Score=37.05 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1367 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
+++.++.||.+-. . .+.|..|||+.+|+|+++|++++.+=
T Consensus 18 ~d~~~~~IL~~L~-~---~~~s~~eLA~~lglS~stv~~~l~~L 57 (192)
T 1uly_A 18 LEDTRRKILKLLR-N---KEMTISQLSEILGKTPQTIYHHIEKL 57 (192)
T ss_dssp HSHHHHHHHHHHT-T---CCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-c---CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5788888887654 2 25799999999999999999876553
No 239
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=48.01 E-value=19 Score=31.89 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.8
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|.+++|+.+|||+.+|+++++-
T Consensus 27 sq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 27 TQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 9999999999999999999874
No 240
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=47.89 E-value=41 Score=33.20 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=38.7
Q ss_pred HHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1356 MRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1356 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
+...+...+. .|++.+..||..-+.. .+.|..+||+.+|+|+.+|.+++.+-
T Consensus 28 ~~~~~~~~l~~~~lt~~~~~iL~~l~~~---~~~t~~ela~~l~i~~~tvs~~l~~L 81 (155)
T 3cdh_A 28 ASAQFHDHIRAQGLRVPEWRVLACLVDN---DAMMITRLAKLSLMEQSRMTRIVDQM 81 (155)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHSSC---SCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHC---CCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555554 5999999988765532 35699999999999999998766553
No 241
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=47.78 E-value=18 Score=29.79 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHhhcccCCCCc----HHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 577 LTPRESKVLRMRFGIEMSSDHT----LEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 577 L~~rer~Vl~lr~~~~~~~~~t----~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
.|+..+.-+...+-.|. | ..+||..+||++++|+++..+ ...++
T Consensus 6 ys~efK~~~~~~~~~g~----s~~~~~~~vA~~~gIs~~tl~~W~~~-~~~~~ 53 (59)
T 2glo_A 6 FTPHFKLQVLESYRNDN----DCKGNQRATARKYNIHRRQIQKWLQC-ESNLR 53 (59)
T ss_dssp CCHHHHHHHHHHHHHCT----TTTTCHHHHHHHTTSCHHHHHHHHTT-HHHHH
T ss_pred CCHHHHHHHHHHHHcCC----CcchHHHHHHHHHCcCHHHHHHHHHH-HHHHH
Confidence 45555543333333344 7 999999999999999887643 33343
No 242
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=47.68 E-value=19 Score=31.79 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=34.1
Q ss_pred ccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q psy15215 1365 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFD----VTRERIRQIEAKA 1410 (1432)
Q Consensus 1365 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~----vs~~~Vrq~~~rA 1410 (1432)
..|++.|..||..-+- ..+.|..||++.++ +++++|...+.+=
T Consensus 5 ~~lt~~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL 51 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK---HSSINTNEVIKELSKTSTWSPKTIQTMLLRL 51 (82)
T ss_dssp CCCCHHHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---CCCCCHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 4699999999876654 23569999999997 7999998776553
No 243
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=47.56 E-value=17 Score=32.96 Aligned_cols=22 Identities=9% Similarity=0.225 Sum_probs=20.9
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|..|+|+.+|||+.+|++++.-
T Consensus 39 Tq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 39 KKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 9999999999999999999875
No 244
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=47.50 E-value=25 Score=31.00 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1386 DHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1386 ~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+.|..|||+.||+|+.+|++.+.+
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~ 37 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLL 37 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 469999999999999999876654
No 245
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=47.47 E-value=32 Score=36.65 Aligned_cols=53 Identities=15% Similarity=0.019 Sum_probs=44.2
Q ss_pred ccCCeEEEEecchhHHHHhhhCC---------------------------------CCCeEEEEecCcHHHHHHHHHHHH
Q psy15215 727 GKSGYVLITEGYMDVIGLSQFGF---------------------------------FANSSYTCFDGDQAGRRAARRALE 773 (1432)
Q Consensus 727 ~~~~~~~~vEG~~D~ia~~~~g~---------------------------------~~~~i~~~~D~D~aG~~a~~~~~~ 773 (1432)
+..+.+.|||-.-||+|+.+.|. ..++|||+++.+--|..-|.=..+
T Consensus 77 Rd~~~iCVVE~~~Dv~aiE~t~~y~G~YhVLgG~lSPldGigP~dL~i~~L~~Rl~~V~EVIlAtnpTvEGEaTA~YI~~ 156 (228)
T 1vdd_A 77 RDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQR 156 (228)
T ss_dssp SCTTEEEEESSHHHHHHTTTTSSCCSEEEECSSCCBGGGTBCTTTSTTGGGGGGCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cCCCeEEEECCHHHHHHHHHhcccceEEEecCCccCcccCCChhhcCHHHHHHHhCCCCEEEEeCCCCchHHHHHHHHHH
Confidence 34568999999999999999986 368999999999999888877777
Q ss_pred Hhhhhc
Q psy15215 774 VCLLYA 779 (1432)
Q Consensus 774 ~~~~~~ 779 (1432)
++...+
T Consensus 157 ~Lk~~~ 162 (228)
T 1vdd_A 157 LLEPLG 162 (228)
T ss_dssp HHTTSS
T ss_pred HHHHcC
Confidence 666544
No 246
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=47.29 E-value=2.1e+02 Score=29.61 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=21.6
Q ss_pred CCCcHHHHHhhcccchhHHHHHHHHHH
Q psy15215 595 SDHTLEEVGKQFDVTRERIRQIEAKAL 621 (1432)
Q Consensus 595 ~~~t~~EIa~~l~is~~~v~~~~~rAl 621 (1432)
.+.|++||+...|++..+++...+.-.
T Consensus 164 ~~~t~~ei~~~~~vs~~ti~~~~~~l~ 190 (200)
T 1ais_B 164 EKRTQREVAEVARVTEVTVRNRYKELV 190 (200)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 456999999999999999986554433
No 247
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=47.27 E-value=21 Score=31.45 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Q psy15215 1366 SLTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 1416 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~ 1416 (1432)
..|+.+..+|.-.|-...- .....++||..+|+|...|+.+....+.|.|+
T Consensus 9 kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk 60 (76)
T 2ecc_A 9 RKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60 (76)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHH
Confidence 4677888888877765431 33467899999999999999999999888876
No 248
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=47.27 E-value=41 Score=32.44 Aligned_cols=51 Identities=14% Similarity=0.273 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 565 SMRSVVKDILNS--LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 565 ~~~~~l~~~L~~--L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.+...+...+.. |++.+..||..-+..+ +.+.|..+||+.+|+++++|...
T Consensus 15 ~~~~~~~~~~~~~~lt~~~~~vL~~l~~~~-~~~~t~~ela~~l~~~~~tvs~~ 67 (139)
T 3eco_A 15 EMKQKADQKLEQFDITNEQGHTLGYLYAHQ-QDGLTQNDIAKALQRTGPTVSNL 67 (139)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHHHHST-TTCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCcCHHHHHHHhCCCcccHHHH
Confidence 345556666654 9999999998766543 14679999999999999998843
No 249
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=47.20 E-value=33 Score=33.41 Aligned_cols=54 Identities=13% Similarity=0.098 Sum_probs=39.8
Q ss_pred HHHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1355 SMRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1355 ~~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
.+...+...+. .||+.|-.||..-+. ..+.|..+||+.+++|+++|..++.+-.
T Consensus 20 ~~~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L~ 75 (140)
T 3hsr_A 20 EIIKKYTNYLKEYDLTYTGYIVLMAIEN---DEKLNIKKLGERVFLDSGTLTPLLKKLE 75 (140)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHSCT---TCEEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 34455555554 499999888876543 2356999999999999999997665543
No 250
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=47.18 E-value=7.1 Score=32.67 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=19.5
Q ss_pred CHHHHHHHhCCCHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIE 1407 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~ 1407 (1432)
|..++|+.+|||+.+|++++
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 89999999999999999997
No 251
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=46.83 E-value=46 Score=32.52 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=38.9
Q ss_pred HHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1357 RSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1357 ~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
...+...+. .|++.+..||..-+.. .+.|..+||+.+|+|+++|.+.+.+-.
T Consensus 28 ~~~~~~~~~~~~l~~~~~~iL~~l~~~---~~~t~~ela~~l~~~~~tvs~~l~~Le 81 (150)
T 2rdp_A 28 KQRGREILTNYPITPPQFVALQWLLEE---GDLTVGELSNKMYLACSTTTDLVDRME 81 (150)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH---CSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHc---CCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 344555554 4999999988775542 245999999999999999998765543
No 252
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=46.82 E-value=42 Score=32.99 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=38.2
Q ss_pred HHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1357 RSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1357 ~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
...+...+. .||+.|-.||..-+.. .+.|..+||+.+|+|+++|.+++.+-.
T Consensus 27 ~~~~~~~~~~~~lt~~q~~iL~~l~~~---~~~~~~eLa~~l~~~~~~vs~~l~~L~ 80 (149)
T 4hbl_A 27 AQFYEKKLKQFGITYSQYLVMLTLWEE---NPQTLNSIGRHLDLSSNTLTPMLKRLE 80 (149)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHS---SSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHC---CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444443 4999999988776532 356999999999999999997665543
No 253
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=46.79 E-value=16 Score=41.50 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=27.1
Q ss_pred HHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHH
Q psy15215 582 SKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 582 r~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
.+|..|+|..+. |..|||+.||+|+.+|++-..
T Consensus 11 ~~ia~l~~~~~~----~~~ela~~l~vS~~tIrRdL~ 43 (315)
T 2w48_A 11 VKIAQLYYEQDM----TQAQIARELGIYRTTISRLLK 43 (315)
T ss_dssp HHHHHHHHTSCC----CHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 457788887666 999999999999999985433
No 254
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=46.74 E-value=36 Score=33.14 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=38.9
Q ss_pred HHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1356 MRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1356 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
+...+...+. .|++.|..||..-+.. .+.|..|||+.+|+|+++|.+++.+-
T Consensus 22 ~~~~~~~~~~~~~lt~~~~~iL~~l~~~---~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (143)
T 3oop_A 22 MHLFLMRSIASYDVTPEQWSVLEGIEAN---EPISQKEIALWTKKDTPTVNRIVDVL 75 (143)
T ss_dssp HHHHHHHHTTTSSSCHHHHHHHHHHHHH---SSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHc---CCcCHHHHHHHHCCCHhhHHHHHHHH
Confidence 4455555664 4999999998775532 34599999999999999998766553
No 255
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=46.52 E-value=46 Score=32.04 Aligned_cols=49 Identities=8% Similarity=0.119 Sum_probs=36.9
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHH
Q psy15215 566 MRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQ 615 (1432)
Q Consensus 566 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~ 615 (1432)
+...+...+. .|++.+..||..-+..+ +.+.|..+||+.+|+++++|..
T Consensus 19 ~~~~~~~~~~~~~lt~~~~~iL~~l~~~~-~~~~~~~ela~~l~~~~~tvs~ 69 (141)
T 3bro_A 19 MSTRFDIFAKKYDLTGTQMTIIDYLSRNK-NKEVLQRDLESEFSIKSSTATV 69 (141)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTT-TSCCBHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCC-CCCcCHHHHHHHHCCCcchHHH
Confidence 3445555554 49999999987766543 2357999999999999998874
No 256
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=46.47 E-value=16 Score=31.98 Aligned_cols=22 Identities=9% Similarity=0.219 Sum_probs=20.6
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|..++|+.+|||+.+|+++++-
T Consensus 27 tq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 27 SYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTT
T ss_pred CHHHHHHHhCcCHHHHHHHHcC
Confidence 9999999999999999999863
No 257
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=46.39 E-value=16 Score=31.24 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=20.5
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|..++|+.+|+|+.+|+++++-
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 20 RQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 9999999999999999998863
No 258
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=46.32 E-value=50 Score=32.79 Aligned_cols=53 Identities=11% Similarity=0.151 Sum_probs=38.1
Q ss_pred HHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1356 MRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1356 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.+..+...|. .||+.+-.||..-+.. +.+.+..|||+.+|+++++|..++.+-
T Consensus 16 ~~~~~~~~l~~~gLt~~q~~vL~~L~~~--~~~~~~~eLa~~l~~~~~tvs~~v~~L 70 (151)
T 4aik_A 16 WRALIDHRLKPLELTQTHWVTLYNINRL--PPEQSQIQLAKAIGIEQPSLVRTLDQL 70 (151)
T ss_dssp HHHHHHHHTGGGCCCHHHHHHHHHHHHS--CTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHc--CCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455566665 4999998887654322 234588999999999999998776553
No 259
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=46.29 E-value=34 Score=33.71 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=37.7
Q ss_pred HHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1357 RSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1357 ~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
...+...+. .|++.+..||..-+.. .+.|..+||+.+|+|+++|.+.+.+-
T Consensus 23 ~~~~~~~~~~~~l~~~~~~iL~~l~~~---~~~t~~ela~~l~~s~~tvs~~l~~L 75 (155)
T 1s3j_A 23 QPEMLESMEKQGVTPAQLFVLASLKKH---GSLKVSEIAERMEVKPSAVTLMADRL 75 (155)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH---SEEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHc---CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444443 6999999988776532 24599999999999999998766543
No 260
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=46.29 E-value=49 Score=32.83 Aligned_cols=53 Identities=11% Similarity=0.170 Sum_probs=39.2
Q ss_pred HHHHHHHHH---ccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1356 MRSVVKDIL---NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1356 ~~~~l~~~L---~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
+...+...+ -.|++.+..||..-+.. .+.|..+||+.+|+|+++|.+++.+-.
T Consensus 33 ~~~~~~~~l~~~~~lt~~~~~iL~~l~~~---~~~t~~ela~~l~is~~tvs~~l~~Le 88 (162)
T 2fa5_A 33 ISGNIAKVYGDRYGMAIPEWRVITILALY---PGSSASEVSDRTAMDKVAVSRAVARLL 88 (162)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHS---TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhC---CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334455555 36999999988776542 356999999999999999987765543
No 261
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=46.19 E-value=35 Score=34.41 Aligned_cols=51 Identities=8% Similarity=0.076 Sum_probs=37.8
Q ss_pred HHHHHHHHc----cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1357 RSVVKDILN----SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1357 ~~~l~~~L~----~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
...+...+. .|++.+..||..-+..+ +.|..+||+.+|+|+++|.+++.+-
T Consensus 29 ~~~~~~~l~~~~~~lt~~~~~iL~~L~~~~---~~t~~eLa~~l~is~~tvs~~l~~L 83 (168)
T 2nyx_A 29 VAISAHSIAQVDENITIPQFRTLVILSNHG---PINLATLATLLGVQPSATGRMVDRL 83 (168)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHC---SEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHcC---CCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 334444443 69999999887655422 4599999999999999999766543
No 262
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=46.13 E-value=22 Score=29.89 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=21.1
Q ss_pred CCHHHHHHHhC--CCHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFD--VTRERIRQIEAK 1409 (1432)
Q Consensus 1387 ~t~~EIa~~l~--vs~~~Vrq~~~r 1409 (1432)
.|.+++|+.+| +|+++|+++++-
T Consensus 22 lsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 22 LSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp CCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 39999999999 999999999874
No 263
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=46.01 E-value=18 Score=31.63 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.|.+++|+.+|||+++|+++++-
T Consensus 25 lsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 25 MTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHhCcCHHHHHHHHCC
Confidence 39999999999999999999863
No 264
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=45.91 E-value=28 Score=33.89 Aligned_cols=53 Identities=15% Similarity=0.062 Sum_probs=39.3
Q ss_pred HHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1356 MRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1356 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
+...+...+. .|++.+..||..-+.. .+.|..+||+.+|+|+++|.+.+.+-.
T Consensus 14 ~~~~~~~~~~~~~lt~~~~~iL~~l~~~---~~~t~~~la~~l~~s~~~vs~~l~~Le 68 (144)
T 1lj9_A 14 LDSISNIEFKELSLTRGQYLYLVRVCEN---PGIIQEKIAELIKVDRTTAARAIKRLE 68 (144)
T ss_dssp HHHHHHHHTGGGTCTTTHHHHHHHHHHS---TTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHC---cCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 4455555664 4999999888765532 246999999999999999987665543
No 265
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=45.87 E-value=1.1e+02 Score=28.78 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHH
Q psy15215 1280 SRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKI 1316 (1432)
Q Consensus 1280 ~~~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~ 1316 (1432)
.++...+.+....++|+++||+.+|+++..+..+.+.
T Consensus 10 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 10 TRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3444455555667889999999999999999888763
No 266
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=45.55 E-value=33 Score=34.28 Aligned_cols=53 Identities=6% Similarity=0.063 Sum_probs=39.4
Q ss_pred HHHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1355 SMRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1355 ~~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.+...+...+. .|++.+-.||..-+.. .+.|..+||+.+|+++++|.+++.+-
T Consensus 30 ~~~~~~~~~l~~~glt~~q~~iL~~l~~~---~~~t~~eLa~~l~~~~~tvs~~l~~L 84 (162)
T 3k0l_A 30 IISKYLTEHLSALEISLPQFTALSVLAAK---PNLSNAKLAERSFIKPQSANKILQDL 84 (162)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHC---TTCCHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHC---CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455555554 5999999998775543 25699999999999999998766553
No 267
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=45.53 E-value=1.2e+02 Score=29.89 Aligned_cols=83 Identities=13% Similarity=0.215 Sum_probs=44.7
Q ss_pred hCCCCCHHHHHHHcCCCHHHHHHHHHHc-c-CCCCCCCCCCCCCCCCcCcccccCCCCChHHHHHHHHHHHHHHHHHhcC
Q psy15215 500 TGSEPDPSVIAIKMEMPEEKIRKIMKIA-K-EPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSL 577 (1432)
Q Consensus 500 ~g~~pt~~eia~~~~~~~~~v~~~~~~~-~-~~~sl~~~~~~~~~~~~~~~i~d~~~~~p~~~~~~~~~~~~l~~~L~~L 577 (1432)
.|...++.+||+.+|++...+-.++... + .-+... +...|...... .+.+.. -..-.............+++.|
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~-~~~~DrR~~~l-~LT~~G--~~~~~~~~~~~~~~~~~~~~~l 118 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRH-TSANDRRAKRI-KLTEQS--SPIIEQVDGVISSTRKEILGGI 118 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-ECSSCTTCEEE-EECGGG--HHHHHHHHHHHHHHHHHHTTTS
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEee-cCCCCCcchhh-hcCHHH--HHHHHHHHHHHHHHHHHHHhCC
Confidence 4666788999999999999999997533 2 222211 11112111111 122111 1111122233445566777888
Q ss_pred CHHHHHHHH
Q psy15215 578 TPRESKVLR 586 (1432)
Q Consensus 578 ~~rer~Vl~ 586 (1432)
++.|+..+.
T Consensus 119 ~~ee~~~l~ 127 (151)
T 4aik_A 119 SSDEIAVLS 127 (151)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888887764
No 268
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=45.45 E-value=36 Score=29.06 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchh
Q psy15215 1366 SLTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 1419 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~ 1419 (1432)
.+++.+..+|...|-.... ......+||..+|+|...|+.+...-..+.|+..+
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 13 RITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 3677788888877754431 33467899999999999999999998888887543
No 269
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=45.44 E-value=21 Score=37.00 Aligned_cols=41 Identities=24% Similarity=0.181 Sum_probs=31.3
Q ss_pred ccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1365 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1365 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
..|+|-|+.....++.. .++|.++||+.+|+|+++|++++.
T Consensus 34 edL~piE~A~a~~~L~~---~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 34 NELTPREIADFIGRELA---KGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TCCCHHHHHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 35888888766554432 245999999999999999998754
No 270
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=45.22 E-value=47 Score=32.31 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=37.8
Q ss_pred HHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1357 RSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1357 ~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
...+...+. .|++.+-.||..-+..+ +.|..+||+.+|+|+++|.+.+.+-
T Consensus 17 ~~~~~~~~~~~~lt~~q~~iL~~l~~~~---~~t~~eLa~~l~~~~~tvs~~l~~L 69 (145)
T 3g3z_A 17 CNVFDKWIGQQDLNYNLFAVLYTLATEG---SRTQKHIGEKWSLPKQTVSGVCKTL 69 (145)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHC---SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455554 49999999887754332 3699999999999999998766553
No 271
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=45.11 E-value=37 Score=32.99 Aligned_cols=49 Identities=22% Similarity=0.355 Sum_probs=34.9
Q ss_pred HHHHHHHHHhc----CCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHH
Q psy15215 566 MRSVVKDILNS----LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIE 617 (1432)
Q Consensus 566 ~~~~l~~~L~~----L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~ 617 (1432)
+...+...+.. |++.+..||..-+..+ +.|..+||+.+|+++++|....
T Consensus 20 ~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~~---~~t~~eLa~~l~~~~~tvs~~l 72 (142)
T 3ech_A 20 VRTRIQSELDCQRLDLTPPDVHVLKLIDEQR---GLNLQDLGRQMCRDKALITRKI 72 (142)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT---TCCHHHHHHHHC---CHHHHHH
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHhCC---CcCHHHHHHHhCCCHHHHHHHH
Confidence 44556666664 9999999998766432 5699999999999999998543
No 272
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=45.01 E-value=14 Score=32.22 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=20.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.|+.++|+.+|||+++|++++.+
T Consensus 23 lT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 23 LSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp CCHHHHHHHHSSCHHHHHHTTTS
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 49999999999999999988653
No 273
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=44.76 E-value=18 Score=33.28 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=24.6
Q ss_pred HHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1375 LRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1375 l~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
-.+|--.|+ |.+++|+.+|||+.+|+++++
T Consensus 36 k~~R~~~gl----sq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 36 KIIRRALKL----TQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HHHHHHTTC----CHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHcCC----CHHHHHHHhCcCHHHHHHHHc
Confidence 334444556 999999999999999999986
No 274
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=44.73 E-value=23 Score=33.11 Aligned_cols=43 Identities=28% Similarity=0.392 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 577 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 577 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
+.+....|+...+-. |...|..|||+.+|+|+++|+ +++.+|.
T Consensus 16 ~~~~~l~Il~~l~~~--g~~~s~~eLa~~lgvs~~tV~----~~L~~L~ 58 (110)
T 1q1h_A 16 LGDDVIDVLRILLDK--GTEMTDEEIANQLNIKVNDVR----KKLNLLE 58 (110)
T ss_dssp SCSTTHHHHHHHHHH--CSCBCHHHHHHTTTSCHHHHH----HHHHHHH
T ss_pred cChHHHHHHHHHHHc--CCCCCHHHHHHHHCcCHHHHH----HHHHHHH
Confidence 445666677655432 224599999999999999998 5666665
No 275
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=44.61 E-value=43 Score=32.99 Aligned_cols=55 Identities=13% Similarity=0.297 Sum_probs=40.6
Q ss_pred HHHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q psy15215 1355 SMRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALR 1412 (1432)
Q Consensus 1355 ~~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~ 1412 (1432)
.+...+...+. .|++.+..||..-+.. .+.|..+||+.+|+|+++|.+++.+-.+
T Consensus 31 ~~~~~~~~~~~~~~l~~~~~~iL~~l~~~---~~~t~~ela~~l~~s~~tvs~~l~~Le~ 87 (153)
T 2pex_A 31 AMHKLYRGLLKALDLTYPQYLVMLVLWET---DERSVSEIGERLYLDSATLTPLLKRLQA 87 (153)
T ss_dssp HHHHHHHHHTTTTTCCHHHHHHHHHHHHS---CSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhC---CCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 34555566664 4999999988765542 3469999999999999999987665443
No 276
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=44.53 E-value=20 Score=31.40 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=21.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.|..++|+.+|||+.+|+++++-
T Consensus 24 lsq~~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 24 LSQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 39999999999999999999863
No 277
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=44.47 E-value=15 Score=32.05 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=20.9
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|..++|+.+|||+.+|+++++.
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHC
Confidence 8999999999999999999975
No 278
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=44.40 E-value=1e+02 Score=30.93 Aligned_cols=122 Identities=10% Similarity=0.130 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHcc--CCC
Q psy15215 454 STYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAK--EPV 531 (1432)
Q Consensus 454 stya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~~--~~~ 531 (1432)
-.|..+.+.+.+.+.+.......-++...+..+.-+ ...+.+.|+.+||+.+|++...|..++.... .-+
T Consensus 27 l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~L--------~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV 98 (166)
T 3deu_A 27 LGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNI--------HQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLI 98 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHH--------HHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH--------HHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCE
Confidence 356666777777777776665555655444433322 2234567999999999999999999975332 222
Q ss_pred CCCCCCCCCCCCCcCcccccCCCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15215 532 SMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRM 587 (1432)
Q Consensus 532 sl~~~~~~~~~~~~~~~i~d~~~~~p~~~~~~~~~~~~l~~~L~~L~~rer~Vl~l 587 (1432)
..... ..+...... .+.+.. -..-.............+++.|++.|+..+.-
T Consensus 99 ~r~~~-~~DrR~~~l-~LT~~G--~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~ 150 (166)
T 3deu_A 99 SRQTC-ASDRRAKRI-KLTEKA--EPLIAEMEEVIHKTRGEILAGISSEEIELLIK 150 (166)
T ss_dssp EEC---------CEE-EECGGG--HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EeeCC-CCCCCeeEE-EECHHH--HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22211 111111111 111111 11111222334555666777788888776643
No 279
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=44.33 E-value=20 Score=32.44 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1386 DHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1386 ~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+.|.+++|+.+|||+++|++++.-
T Consensus 22 glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 22 EKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp SSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhC
Confidence 349999999999999999999864
No 280
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=44.28 E-value=30 Score=33.84 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=36.7
Q ss_pred HHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1358 SVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1358 ~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
..+...+. .|++.+..||..-+.. ..+.|..+||+.+|+|+++|.+.+.+-.
T Consensus 22 ~~~~~~~~~~~l~~~~~~iL~~l~~~--~~~~~~~~la~~l~i~~~~vs~~l~~Le 75 (147)
T 2hr3_A 22 RRLRREAQADPVQFSQLVVLGAIDRL--GGDVTPSELAAAERMRSSNLAALLRELE 75 (147)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHc--CCCCCHHHHHHHhCCChhhHHHHHHHHH
Confidence 34444443 3788888888765531 1246999999999999999997765543
No 281
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=44.06 E-value=43 Score=32.61 Aligned_cols=48 Identities=6% Similarity=0.206 Sum_probs=35.1
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 567 RSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 567 ~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
...+...+. .|++.+..|+.+-+..+ .+.|..|||+.+|+|+++|...
T Consensus 12 ~~~~~~~~~~~gl~~~~~~il~~L~~~~--~~~t~~ela~~l~~~~stvs~~ 61 (152)
T 1ku9_A 12 IELFSELAKIHGLNKSVGAVYAILYLSD--KPLTISDIMEELKISKGNVSMS 61 (152)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHCS--SCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHcC--CCCCHHHHHHHHCcCHHHHHHH
Confidence 334444443 49999999987764322 3579999999999999998743
No 282
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=44.04 E-value=30 Score=33.27 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=38.3
Q ss_pred HHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1357 RSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1357 ~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
...+...+. .|++.|-.||..-+... +.+.|..|||+.+++++++|.+.+.+
T Consensus 23 ~~~~~~~~~~~~lt~~q~~vL~~l~~~~-~~~~t~~eLa~~l~~~~~tvs~~l~~ 76 (127)
T 2frh_A 23 DKLKSLIKKEFSISFEEFAVLTYISENK-EKEYYLKDIINHLNYKQPQVVKAVKI 76 (127)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTC-CSEEEHHHHHHHSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344455554 49999999987765431 14569999999999999999876654
No 283
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=43.73 E-value=42 Score=32.29 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=36.1
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 566 MRSVVKDILN-SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 566 ~~~~l~~~L~-~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
+...+...+. .|++.+..||..-+..+ +.|..+||+.+|+++++|...
T Consensus 24 ~~~~~~~~~~~~l~~~~~~iL~~l~~~~---~~t~~ela~~l~~~~~tvs~~ 72 (140)
T 2nnn_A 24 YAALFANGIGNGLTPTQWAALVRLGETG---PCPQNQLGRLTAMDAATIKGV 72 (140)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHHHHHHS---SBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCHHHHHHH
Confidence 3445555555 69999999887665322 569999999999999998743
No 284
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=43.69 E-value=14 Score=32.73 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHH-HHHHHHHH
Q psy15215 1369 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRE-RIRQIEAK 1409 (1432)
Q Consensus 1369 ~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~-~Vrq~~~r 1409 (1432)
+....||.+-.-.| +.|..+||+.||+|.. .|++.+.+
T Consensus 11 ~~~~~IL~~Lk~~g---~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 11 EIKEKICDYLFNVS---DSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp HHHHHHHHHHHHTC---CEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcC---CcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 34455554433322 4599999999999999 99987764
No 285
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=43.49 E-value=17 Score=30.98 Aligned_cols=23 Identities=9% Similarity=0.058 Sum_probs=21.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.|.+++|+.+|||+.+|+++++-
T Consensus 22 lsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 22 KTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 39999999999999999999864
No 286
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=43.36 E-value=99 Score=29.81 Aligned_cols=63 Identities=6% Similarity=0.097 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHH
Q psy15215 455 TYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKI 526 (1432)
Q Consensus 455 tya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~ 526 (1432)
.|..+.+.+.+.+.+........++...+..+.-+.. . .+.|+.+||+.+|++...+..++..
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~~--------~-~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (143)
T 3oop_A 12 SFDVNTTAKKMHLFLMRSIASYDVTPEQWSVLEGIEA--------N-EPISQKEIALWTKKDTPTVNRIVDV 74 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSSCHHHHHHHHHHHH--------H-SSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHH--------c-CCcCHHHHHHHHCCCHhhHHHHHHH
Confidence 4555666666777776666555565554444443321 1 4568999999999999999998753
No 287
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=43.30 E-value=38 Score=33.32 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=37.2
Q ss_pred HHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1357 RSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1357 ~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
...+...+. .||+.|..||..-. ..+.|..|||+.+|+|+++|.+.+.+-
T Consensus 24 ~~~~~~~~~~~~lt~~q~~iL~~l~----~~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (151)
T 3kp7_A 24 AKLLKDLQTEYGISAEQSHVLNMLS----IEALTVGQITEKQGVNKAAVSRRVKKL 75 (151)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHH----HSCBCHHHHHHHHCSCSSHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHH----cCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444443 59999999887652 245699999999999999999766554
No 288
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=43.08 E-value=54 Score=32.40 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=37.3
Q ss_pred HHHHHHHHHc--cCCHHHHHHHHHHhcccC--CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1356 MRSVVKDILN--SLTPRESKVLRMRFGIEM--SSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1356 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~--~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
+...+...|. .|++.|-.||..-+..+. +.+.|..|||+.+++++++|...+.+-
T Consensus 18 ~~~~~~~~l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~L 76 (148)
T 4fx0_A 18 LGQAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVM 76 (148)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 3444555664 499999988876554321 245699999999999999999877653
No 289
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=42.97 E-value=51 Score=31.97 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=34.2
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHH
Q psy15215 568 SVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQ 615 (1432)
Q Consensus 568 ~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~ 615 (1432)
..+...+. .|++.+..||..-+ +.+.|..+||+.+|+|+++|..
T Consensus 24 ~~~~~~~~~~~l~~~~~~iL~~l~----~~~~~~~ela~~l~~s~~tvs~ 69 (146)
T 2gxg_A 24 RELNRRLGELNLSYLDFLVLRATS----DGPKTMAYLANRYFVTQSAITA 69 (146)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT----TSCBCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHh----cCCcCHHHHHHHhCCCchhHHH
Confidence 34445554 49999999987765 2456999999999999999874
No 290
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=42.90 E-value=15 Score=38.63 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHHhhcccCCCC--cHHHHHhhcccc-hhHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDH--TLEEVGKQFDVT-RERIRQIEA 618 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~--t~~EIa~~l~is-~~~v~~~~~ 618 (1432)
.||++|+.++..---.-...++ |..|+|+.+|++ +++|.+++.
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHH
Confidence 5889888876432211111344 999999999999 999987654
No 291
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=42.86 E-value=26 Score=31.42 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=21.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.|.+++|+.+|||+.+|+++++-
T Consensus 27 lsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 27 LTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 39999999999999999999873
No 292
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=42.82 E-value=24 Score=36.15 Aligned_cols=56 Identities=7% Similarity=0.033 Sum_probs=40.8
Q ss_pred HHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1356 MRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1356 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
+...+...+. .|++.+..||..-+..+.+.+.|..+||+.+|+|+++|.+++.+=.
T Consensus 54 ~~~~~~~~l~~~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le 111 (181)
T 2fbk_A 54 LGREIERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLL 111 (181)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555554 4999999998876654422246999999999999999987765543
No 293
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=42.59 E-value=72 Score=28.80 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 578 TPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 578 ~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
++....||.+- . .+.|..|||+.+|+|+++|++.
T Consensus 30 ~~~r~~Il~~L-~----~~~~~~eLa~~l~is~~tv~~~ 63 (96)
T 1y0u_A 30 NPVRRKILRML-D----KGRSEEEIMQTLSLSKKQLDYH 63 (96)
T ss_dssp CHHHHHHHHHH-H----TTCCHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHH-c----CCCCHHHHHHHHCcCHHHHHHH
Confidence 45666677654 2 2469999999999999999843
No 294
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=42.38 E-value=63 Score=28.82 Aligned_cols=56 Identities=13% Similarity=0.208 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHHhcccCCCC----CCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhh
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSD----HTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYY 1421 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~----~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~ 1421 (1432)
.+++.+..+|.-.|......+ ..-.+||..+|+|...|+.+....+.+.|+.....
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 478888899988884222222 24678999999999999999999999998866544
No 295
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=42.28 E-value=18 Score=33.10 Aligned_cols=46 Identities=15% Similarity=0.121 Sum_probs=35.8
Q ss_pred HhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHH
Q psy15215 574 LNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKL 624 (1432)
Q Consensus 574 L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kL 624 (1432)
+..|++.|..|+..-+..+. .+.+..|||..++++..+|. +++++|
T Consensus 15 ~~~Lt~~q~~Vl~~I~~~g~-~gi~qkeLa~~~~l~~~tvt----~iLk~L 60 (91)
T 2dk5_A 15 MKGSDNQEKLVYQIIEDAGN-KGIWSRDVRYKSNLPLTEIN----KILKNL 60 (91)
T ss_dssp CCCSCSSHHHHHHHHHHHCT-TCEEHHHHHHHTTCCHHHHH----HHHHHH
T ss_pred hcCCCHHHHHHHHHHHHcCC-CCcCHHHHHHHHCCCHHHHH----HHHHHH
Confidence 45689999999988774332 45699999999999999987 555555
No 296
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=42.10 E-value=30 Score=29.87 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHhccc----CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCch
Q psy15215 1366 SLTPRESKVLRMRFGIE----MSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 1418 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~----~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~ 1418 (1432)
.+|+.+..+|.-.|... ......-+++|..+|+|...|+.+......+.+++.
T Consensus 13 ~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 13 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 47788888888777532 112234678999999999999999999998888754
No 297
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=42.04 E-value=67 Score=30.75 Aligned_cols=39 Identities=10% Similarity=0.218 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1368 TPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1368 ~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.+....||.+-.. .+.|..|||+.+|+|+++|++.+++-
T Consensus 45 ~~~rl~IL~~L~~----~~~s~~ela~~lgis~stvs~~L~~L 83 (122)
T 1r1t_A 45 DPNRLRLLSLLAR----SELCVGDLAQAIGVSESAVSHQLRSL 83 (122)
T ss_dssp CHHHHHHHHHHTT----CCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4556667765432 24699999999999999999876543
No 298
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=42.02 E-value=14 Score=37.30 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=29.0
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 619 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~r 619 (1432)
.++..++.-+...+-.|. |..+||+.||+|+.+|+.+..+
T Consensus 25 ~~s~e~r~~ii~l~~~G~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLAHQGV----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHHHHTC----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 366666654444444455 9999999999999999977653
No 299
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=41.90 E-value=21 Score=33.39 Aligned_cols=35 Identities=6% Similarity=0.071 Sum_probs=25.6
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1371 ESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1371 er~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
...||.+-.. .+.|..|||+.+|+|+++|++.+++
T Consensus 27 r~~IL~~L~~----~~~s~~eLa~~lgis~stvs~~L~~ 61 (108)
T 2kko_A 27 RLQILDLLAQ----GERAVEAIATATGMNLTTASANLQA 61 (108)
T ss_dssp THHHHHHHTT----CCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHc----CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3456654331 3469999999999999999976654
No 300
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=41.89 E-value=26 Score=31.87 Aligned_cols=41 Identities=7% Similarity=0.077 Sum_probs=30.8
Q ss_pred cCCHHHHHHHHHHhhc-ccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 576 SLTPRESKVLRMRFGI-EMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~-~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.|+.++..||...+.. +.+.+.|..+||+.+|+++++|.+.
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~ 50 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLI 50 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHH
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 3888888888765543 2223369999999999999999843
No 301
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=41.82 E-value=21 Score=30.51 Aligned_cols=23 Identities=13% Similarity=0.110 Sum_probs=20.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.|..++|+.+|+|+.+|+++++-
T Consensus 24 ~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 24 RTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 39999999999999999998863
No 302
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=41.77 E-value=24 Score=32.39 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHH
Q psy15215 579 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 579 ~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
+|...|+.+..-.+ .|..+||+.+|||..+|+..+.
T Consensus 7 ~R~~~I~~~l~~~~----~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 7 ERTIKIGKYIVETK----KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHHHC----CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC----CCHHHHHHHHCCCHHHHHHHHc
Confidence 45555665544333 4999999999999999997554
No 303
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=41.69 E-value=32 Score=33.64 Aligned_cols=44 Identities=11% Similarity=0.205 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHhcc-cCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1367 LTPRESKVLRMRFGI-EMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~-~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
|++.+..+|..-+.. ..+.+.|..+||+.+|+|+++|+..+.+-
T Consensus 2 ls~~~~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~L 46 (142)
T 1on2_A 2 TTPSMEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKL 46 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 556665555443321 11235699999999999999999766543
No 304
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=41.63 E-value=1.7e+02 Score=28.04 Aligned_cols=63 Identities=5% Similarity=0.047 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHH
Q psy15215 456 YATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKI 526 (1432)
Q Consensus 456 ya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~ 526 (1432)
+..+.+.+.+.+.+.......-++...+..+..+. ..+.+.|+.+||+.+|++...|..+++.
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l~--------~~~~~~t~~~la~~l~~s~~~vs~~l~~ 75 (146)
T 2fbh_A 13 TLLAQTSRAWRAELDRRLSHLGLSQARWLVLLHLA--------RHRDSPTQRELAQSVGVEGPTLARLLDG 75 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHHH--------HCSSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--------HcCCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 44455555555555554444445544443333220 1245678999999999999999999853
No 305
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=41.51 E-value=38 Score=32.86 Aligned_cols=43 Identities=12% Similarity=0.184 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
.|++.+..||..-+.. .+.|..+||+.+|+|+++|...+.+-.
T Consensus 30 ~l~~~~~~iL~~l~~~---~~~~~~~la~~l~~s~~tvs~~l~~L~ 72 (145)
T 2a61_A 30 GITPAQFDILQKIYFE---GPKRPGELSVLLGVAKSTVTGLVKRLE 72 (145)
T ss_dssp TCCHHHHHHHHHHHHH---CCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 5999999988776542 245999999999999999987665543
No 306
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=41.31 E-value=52 Score=32.35 Aligned_cols=51 Identities=8% Similarity=0.111 Sum_probs=37.8
Q ss_pred HHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1358 SVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1358 ~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
..+...+. .|++.+..||..-+.. .+.|..+||+.+|+|+++|.+++.+-.
T Consensus 28 ~~~~~~~~~~~lt~~~~~iL~~l~~~---~~~t~~eLa~~l~~~~~tvs~~l~~Le 80 (154)
T 2qww_A 28 GYADQNAASLGLTIQQLAMINVIYST---PGISVADLTKRLIITGSSAAANVDGLI 80 (154)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHS---TTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHC---CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444443 5999999988776543 246999999999999999988765543
No 307
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=41.28 E-value=49 Score=32.67 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=37.3
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 566 MRSVVKDILNS--LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 566 ~~~~l~~~L~~--L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
+...+...|.. ||..|-.||.+-+... +.+.|..+||+.+++++++|...
T Consensus 20 l~~~~~~~l~~~gLt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~~~~~tvs~~ 71 (147)
T 4b8x_A 20 LLGEVDAVVKPYGLTFARYEALVLLTFSK-SGELPMSKIGERLMVHPTSVTNT 71 (147)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHTSG-GGEEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCC-CCCcCHHHHHHHHCCCHHHHHHH
Confidence 44556667754 9999999987665332 13469999999999999998843
No 308
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=41.21 E-value=23 Score=32.66 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.7
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|.+++|+.+|||+.+|+++++-
T Consensus 43 tq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 43 TQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHCC
Confidence 9999999999999999999863
No 309
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=41.16 E-value=28 Score=33.51 Aligned_cols=53 Identities=2% Similarity=0.092 Sum_probs=39.4
Q ss_pred HHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1356 MRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1356 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
....+...+. .|++.+..||..-+.. .+.|..+||+.+|+|+++|.+.+.+-.
T Consensus 18 ~~~~~~~~~~~~~l~~~~~~iL~~l~~~---~~~~~~ela~~l~~~~~tvs~~l~~L~ 72 (139)
T 3bja_A 18 LQKNLDKAIEQYDISYVQFGVIQVLAKS---GKVSMSKLIENMGCVPSNMTTMIQRMK 72 (139)
T ss_dssp HHHHHHHHTGGGTCCHHHHHHHHHHHHS---CSEEHHHHHHHCSSCCTTHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHc---CCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 3445555554 4999999998776542 246999999999999999987765543
No 310
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=41.16 E-value=11 Score=32.23 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=19.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
.|+.+||+..|||+.||+.+++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 4999999999999999998764
No 311
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=40.93 E-value=34 Score=29.49 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHHHhcccCC----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhh
Q psy15215 1366 SLTPRESKVLRMRFGIEMS----SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYY 1421 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~----~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~ 1421 (1432)
.+|+.+..+|.-.|..... ....-.++|..+|+|...|+.+......+.|+.....
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 4788888899888832211 2234678999999999999999999999988765543
No 312
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=40.79 E-value=30 Score=34.36 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=29.8
Q ss_pred hcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 575 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 575 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
..|++.++.||.+--. +...|+.|||+.+|+|+++|+++
T Consensus 5 ~~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~ 43 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSE---NSRLTYRELADILNTTRQRIARR 43 (151)
T ss_dssp -CCCHHHHHHHHHHHH---CTTCCHHHHHHHTTSCHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHH
Confidence 3488889888865432 23469999999999999999743
No 313
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=40.51 E-value=36 Score=33.92 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
.|++.+..||..-+.. .+.|..+||+.+|+|+++|...+.+-.
T Consensus 49 ~lt~~~~~iL~~l~~~---~~~t~~ela~~l~is~~tvs~~l~~Le 91 (162)
T 3cjn_A 49 GLSTAKMRALAILSAK---DGLPIGTLGIFAVVEQSTLSRALDGLQ 91 (162)
T ss_dssp TCCHHHHHHHHHHHHS---CSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHC---CCCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 4999999998776532 246999999999999999987665543
No 314
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=40.50 E-value=49 Score=30.11 Aligned_cols=42 Identities=17% Similarity=0.449 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKL 624 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kL 624 (1432)
.|++.+..||..-.. ..+.|..|||+.+|+++++|. +.+.+|
T Consensus 17 ~l~~~~~~il~~l~~---~~~~s~~ela~~l~is~~tv~----~~l~~L 58 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLE---RGGMRVSEIARELDLSARFVR----DRLKVL 58 (109)
T ss_dssp CCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHH----HHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHH----HHHHHH
Confidence 478999888876542 134699999999999999997 444445
No 315
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=40.43 E-value=51 Score=33.21 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=39.4
Q ss_pred HHHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1355 SMRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1355 ~~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.+...+...+. .|++.|-.||..-+.. +.+.|..|||+.+++++++|.+.+.+-
T Consensus 37 ~~~~~~~~~l~~~glt~~q~~vL~~L~~~--~~~~t~~eLa~~l~i~~~tvs~~l~~L 92 (166)
T 3deu_A 37 IWRALIDHRLKPLELTQTHWVTLHNIHQL--PPDQSQIQLAKAIGIEQPSLVRTLDQL 92 (166)
T ss_dssp HHHHHHHHHTTTTTCCHHHHHHHHHHHHS--CSSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHCCCHhhHHHHHHHH
Confidence 34555566664 4999998888765431 234599999999999999999766553
No 316
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=40.24 E-value=23 Score=34.01 Aligned_cols=31 Identities=0% Similarity=0.119 Sum_probs=25.1
Q ss_pred HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1374 VLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1374 Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
+-.+|--.|+ |.+|+|+.+|||+.+|+++++
T Consensus 45 L~~~R~~~gl----TQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 45 LNAVIDRARL----SQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HHHHHHHTTC----CHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHc
Confidence 3344554556 999999999999999999986
No 317
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=40.23 E-value=43 Score=29.27 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 567 RSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 567 ~~~l~~~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
.+.+..++..|++-+ .-|..+||++||+|...|. |+|.+|.
T Consensus 14 ~~~v~~~i~~L~~~~--------------~~Ta~~IAkkLg~sK~~vN----r~LY~L~ 54 (75)
T 1sfu_A 14 FSLVKKEVLSLNTND--------------YTTAISLSNRLKINKKKIN----QQLYKLQ 54 (75)
T ss_dssp HHHHHHHHHTSCTTC--------------EECHHHHHHHTTCCHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhCCCCc--------------chHHHHHHHHHCCCHHHHH----HHHHHHH
Confidence 445666666666433 2499999999999998877 5555554
No 318
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=39.96 E-value=1.6e+02 Score=28.85 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc-cccccchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHH
Q psy15215 454 STYATWWIRQAITRSIADQA-RTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKI 526 (1432)
Q Consensus 454 stya~~~ir~~i~~~i~~~~-r~irip~~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~ 526 (1432)
-.|..+++.+.+.+.+.+.. ...-++...+..+..+. . +.+.|..+||+.+|++...|..+++.
T Consensus 22 l~~~l~~~~~~~~~~~~~~l~~~~~lt~~~~~iL~~l~--------~-~~~~t~~ela~~l~is~~tvs~~l~~ 86 (162)
T 2fa5_A 22 LPYRLSVLSNRISGNIAKVYGDRYGMAIPEWRVITILA--------L-YPGSSASEVSDRTAMDKVAVSRAVAR 86 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--------H-STTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH--------h-CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 44555555555555554432 22334443333332221 1 34679999999999999999998753
No 319
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=39.93 E-value=29 Score=32.93 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=25.3
Q ss_pred HHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1376 RMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1376 ~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.+|--.|+ |++++|+.+|||+.+|++++.-
T Consensus 14 ~~R~~~gl----Sq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 14 KKREERRI----TLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp HHHHTTTC----CHHHHHHHSSCCHHHHHHHHHT
T ss_pred HHHHHcCC----CHHHHHHHHCcCHHHHHHHHCC
Confidence 45555555 9999999999999999999974
No 320
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=39.74 E-value=33 Score=34.10 Aligned_cols=54 Identities=7% Similarity=0.070 Sum_probs=39.2
Q ss_pred HHHHHHHHHc---cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1356 MRSVVKDILN---SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1356 ~~~~l~~~L~---~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
+...+...+. .|++.+..||..-+..+ .+.|..+||+.+|+++++|.+.+.+-.
T Consensus 31 ~~~~~~~~l~~~~~l~~~~~~iL~~L~~~~--~~~~~~ela~~l~i~~~tvs~~l~~Le 87 (160)
T 3boq_A 31 VFGDLNRQLLDETGLSLAKFDAMAQLARNP--DGLSMGKLSGALKVTNGNVSGLVNRLI 87 (160)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHCT--TCEEHHHHHHHCSSCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHcC--CCCCHHHHHHHHCCChhhHHHHHHHHH
Confidence 3344555554 59999999987764222 356999999999999999987765543
No 321
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=39.74 E-value=32 Score=33.96 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.|++.++.||.+-... ...|+.|||+.+|+|+++|+.+
T Consensus 2 ~ld~~d~~il~~L~~~---~~~s~~ela~~lg~s~~tv~~~ 39 (144)
T 2cfx_A 2 KLDQIDLNIIEELKKD---SRLSMRELGRKIKLSPPSVTER 39 (144)
T ss_dssp CCCHHHHHHHHHHHHC---SCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHH
Confidence 3788888888754322 3469999999999999999743
No 322
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=39.64 E-value=53 Score=30.09 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHh-CCCHHHHHHHHHHHHHHhh
Q psy15215 1369 PRESKVLRMRFGIEMSSDHTLEEVGKQF-DVTRERIRQIEAKALRKLR 1415 (1432)
Q Consensus 1369 ~rer~Vl~lr~~~~~~~~~t~~EIa~~l-~vs~~~Vrq~~~rAl~kLr 1415 (1432)
||+-.+...|-..++ |+.+||+.| |...+||.....+.-+.+.
T Consensus 33 aRqiamyL~r~~t~~----Sl~~IG~~fggrdHsTV~ha~~ki~~~~~ 76 (94)
T 1j1v_A 33 PRQMAMALAKELTNH----SLPEIGDAFGGRDHTTVLHACRKIEQLRE 76 (94)
T ss_dssp HHHHHHHHHHHHSCC----CHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc----CHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 455555555665566 999999999 8999999987777766554
No 323
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=39.62 E-value=22 Score=32.72 Aligned_cols=52 Identities=8% Similarity=0.080 Sum_probs=34.8
Q ss_pred HHH-HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHHhh
Q psy15215 1371 ESK-VLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIF 1426 (1432)
Q Consensus 1371 er~-Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~~~ 1426 (1432)
++. |+.-....+. |+.|+|+++|||++.|.++...-.+.-....+...+..|
T Consensus 37 ~Kl~VV~~~~~g~~----s~~e~arry~Is~s~i~~W~r~~~~~G~~~L~~~~~q~Y 89 (95)
T 2jrt_A 37 RKAAVVKAVIHGLI----TEREALDRYSLSEEEFALWRSAVAAHGEKALKVTMIQKY 89 (95)
T ss_dssp HHHHHHHHHHTTSS----CHHHHHHHTTCCHHHHHHHHHHTTTCCTTSCCTTHHHHH
T ss_pred HHHHHHHHHHcCCC----CHHHHHHHhCCCHHHHHHHHHHHHHHhHHHHhhcHHHHH
Confidence 444 4444444444 999999999999999999998765444444444444444
No 324
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=39.54 E-value=1.1e+02 Score=29.43 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHc
Q psy15215 489 ISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIA 527 (1432)
Q Consensus 489 ~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~ 527 (1432)
+.++...+.+....+++.++||+.+|+++..+..+.+..
T Consensus 13 i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 13 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 445555566667788999999999999999999987643
No 325
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=39.14 E-value=32 Score=32.59 Aligned_cols=41 Identities=10% Similarity=0.175 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHh--CCCHHHHHHHHHHH
Q psy15215 1367 LTPRESKVLRMRFGIEMSSDHTLEEVGKQF--DVTRERIRQIEAKA 1410 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l--~vs~~~Vrq~~~rA 1410 (1432)
+.+..+.||.+---.+ +.|..+||+.+ |+|+.+|++++.+-
T Consensus 11 md~~d~~IL~~L~~~g---~~s~~eLA~~l~~giS~~aVs~rL~~L 53 (111)
T 3b73_A 11 MTIWDDRILEIIHEEG---NGSPKELEDRDEIRISKSSVSRRLKKL 53 (111)
T ss_dssp CCHHHHHHHHHHHHHS---CBCHHHHHTSTTCCSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC---CCCHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6777888886632212 46999999999 99999999887653
No 326
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=39.06 E-value=43 Score=33.40 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=38.3
Q ss_pred HHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1356 MRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1356 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
+...+...+. .|++.|-.||..-+..+ +.|..+||+.+|+++++|.+++.+-
T Consensus 38 ~~~~~~~~~~~~glt~~q~~vL~~l~~~~---~~t~~eLa~~l~~~~~~vs~~l~~L 91 (161)
T 3e6m_A 38 WSSELNQALASEKLPTPKLRLLSSLSAYG---ELTVGQLATLGVMEQSTTSRTVDQL 91 (161)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHS---EEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhCC---CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444443 59999999887755422 4599999999999999999766554
No 327
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=38.93 E-value=43 Score=29.83 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHhcccCC----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchh
Q psy15215 1366 SLTPRESKVLRMRFGIEMS----SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 1419 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~----~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~ 1419 (1432)
.+|..+..+|.-.|..... ....-++||..+|+|...|+.+...++.+.++.+.
T Consensus 13 ~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 13 NLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp SCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 3777888888776654211 22356789999999999999999999999877543
No 328
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=38.84 E-value=32 Score=33.55 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 577 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 577 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
|++.+..||..-+..+ .|..|||+.+|+|+++|.+.
T Consensus 36 lt~~~~~iL~~l~~~~----~t~~eLa~~l~~s~~tvs~~ 71 (146)
T 3tgn_A 36 LTNTQEHILMLLSEES----LTNSELARRLNVSQAAVTKA 71 (146)
T ss_dssp CCHHHHHHHHHHTTCC----CCHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhCC----CCHHHHHHHHCCCHHHHHHH
Confidence 7888888887665433 69999999999999999843
No 329
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=38.73 E-value=34 Score=27.82 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=38.1
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Q psy15215 1366 SLTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 1416 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~ 1416 (1432)
..++.+..+|...|..... ....-.++|..+|+|...|+.+...-+.|.|+
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 4678888888888765431 22346789999999999999998877777664
No 330
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=38.70 E-value=62 Score=29.92 Aligned_cols=44 Identities=11% Similarity=0.303 Sum_probs=30.1
Q ss_pred HHHHHHhcCC-HHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 569 VVKDILNSLT-PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 569 ~l~~~L~~L~-~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.+..++..|. +....||.+-.. .+.|..|||+.+|+|+++|+++
T Consensus 15 ~~~~~~~~l~~~~r~~IL~~L~~----~~~~~~ela~~l~is~stvs~~ 59 (106)
T 1r1u_A 15 RVTEIFKALGDYNRIRIMELLSV----SEASVGHISHQLNLSQSNVSHQ 59 (106)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHH----CCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHH
Confidence 3444555555 555566665432 3469999999999999999843
No 331
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=38.67 E-value=30 Score=33.12 Aligned_cols=39 Identities=8% Similarity=0.012 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1368 TPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1368 ~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.+....||.+-... .+.|..|||+.+|+|+++|++.++.
T Consensus 41 ~~~rl~IL~~L~~~---~~~s~~eLa~~l~is~stvs~~L~~ 79 (122)
T 1u2w_A 41 DENRAKITYALCQD---EELCVCDIANILGVTIANASHHLRT 79 (122)
T ss_dssp SHHHHHHHHHHHHS---SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHC---CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 45555676554311 2459999999999999999987654
No 332
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=38.53 E-value=34 Score=33.26 Aligned_cols=43 Identities=12% Similarity=0.194 Sum_probs=30.9
Q ss_pred HhcCCHHHHHHHHHHhhc-ccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 574 LNSLTPRESKVLRMRFGI-EMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 574 L~~L~~rer~Vl~lr~~~-~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
+..|++.+..+|..-+.. ..+.+.|..+||+.+|+++++|...
T Consensus 8 ~~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~ 51 (139)
T 2x4h_A 8 MSNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEE 51 (139)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHH
Confidence 346898888887765432 2234679999999999999999843
No 333
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=38.49 E-value=47 Score=28.06 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=42.4
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhh
Q psy15215 1366 SLTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRY 1420 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~ 1420 (1432)
.+++.+..+|...|..... ......++|..+|+|...|+.+...-..+.|+..+.
T Consensus 7 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 7 AFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 3678888888888865431 122467899999999999999999999888876543
No 334
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=38.44 E-value=22 Score=30.12 Aligned_cols=24 Identities=8% Similarity=-0.082 Sum_probs=22.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.|..|+++.+|||++||.+..+++
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 489999999999999999998875
No 335
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=38.20 E-value=26 Score=32.69 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=20.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
.|..++|+.+|||+.+|+++++
T Consensus 28 ltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 28 MSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 3999999999999999999986
No 336
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=38.03 E-value=34 Score=33.87 Aligned_cols=44 Identities=7% Similarity=0.117 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALR 1412 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~ 1412 (1432)
.|++.+..||..-+..+ +.|..+||+.+|+|+++|.+.+.+-.+
T Consensus 41 ~lt~~~~~iL~~l~~~~---~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 41 DMKTTELYAFLYVALFG---PKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp HSBHHHHHHHHHHHHHC---CBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 38999988887755322 459999999999999999877655443
No 337
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=38.03 E-value=54 Score=31.40 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHhhC
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQF-----DVTRERIRQIEAKALRKLRH 1416 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l-----~vs~~~Vrq~~~rAl~kLr~ 1416 (1432)
.||++|..+|.+ +....|...|-++|.+.+ .++..+|++.+++-++||..
T Consensus 43 ~Lt~~E~~LL~~-L~~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 97 (121)
T 2hwv_A 43 ELTHREFELLYY-LAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIED 97 (121)
T ss_dssp ECCHHHHHHHHH-HHHTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHCS
T ss_pred ECCHHHHHHHHH-HHHcCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHhh
Confidence 499999998866 445556888999999988 68899999999999999975
No 338
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=37.83 E-value=33 Score=29.18 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=24.6
Q ss_pred HhCCCCCHHHHHHHcCCCHHHHHHHHHHc
Q psy15215 1289 ETGSEPDPSVIAIKMEMPEEKIRKIMKIA 1317 (1432)
Q Consensus 1289 ~~g~~pt~~eia~~~~~~~~~v~~~~~~~ 1317 (1432)
+.+.+-+..|||+.+|+|...|.+.++..
T Consensus 21 ~~~~~~s~~eLA~~lglsr~tv~~~l~~L 49 (67)
T 2heo_A 21 DDGGPVAIFQLVKKCQVPKKTLNQVLYRL 49 (67)
T ss_dssp HHCSCEEHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HcCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34556789999999999999999998754
No 339
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=37.82 E-value=72 Score=30.47 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=36.9
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 565 SMRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 565 ~~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.+...+...+. .|++.+..||..-+.. .+.|..|||+.+|+|+++|...
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~iL~~l~~~---~~~~~~ela~~l~~s~~tvs~~ 63 (138)
T 3bpv_A 13 SHRVFIGRELGHLNLTDAQVACLLRIHRE---PGIKQDELATFFHVDKGTIART 63 (138)
T ss_dssp HHHHHHHHHSGGGTCCHHHHHHHHHHHHS---TTCBHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHc---CCCCHHHHHHHHCCCHHHHHHH
Confidence 34455566665 4999999988766542 3569999999999999999843
No 340
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=37.80 E-value=35 Score=33.94 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=29.4
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.|++.++.||.+-... ...|+.|||+.+|+|+++|+++
T Consensus 4 ~ld~~~~~il~~L~~~---~~~s~~ela~~lg~s~~tv~~~ 41 (151)
T 2cyy_A 4 PLDEIDKKIIKILQND---GKAPLREISKITGLAESTIHER 41 (151)
T ss_dssp CCCHHHHHHHHHHHHC---TTCCHHHHHHHHCSCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHH
Confidence 4788888888754322 2469999999999999999743
No 341
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=37.72 E-value=47 Score=36.22 Aligned_cols=44 Identities=16% Similarity=0.300 Sum_probs=34.3
Q ss_pred HHccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1363 ILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1363 ~L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.-..|++.+..||..-... .+.|..|||+.+|+|++||.+++++
T Consensus 146 ~~~~L~~~~~~IL~~L~~~---~~~s~~eLA~~lglsksTv~r~L~~ 189 (244)
T 2wte_A 146 LMRDYSREEMKLLNVLYET---KGTGITELAKMLDKSEKTLINKIAE 189 (244)
T ss_dssp HHSCCCHHHHHHHHHHHHH---TCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3457999999999764321 2459999999999999999876654
No 342
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=37.63 E-value=62 Score=31.38 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=30.8
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.|++.+..||..-+..+. |..+||+.+|+++++|...
T Consensus 34 ~lt~~~~~iL~~l~~~~~----~~~~la~~l~~~~~tvs~~ 70 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR----SMVYLANRYFVTQSAITAA 70 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE----EHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCC----CHHHHHHHHCCChhHHHHH
Confidence 689999999987664333 9999999999999999843
No 343
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=37.63 E-value=1.2e+02 Score=30.05 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHH
Q psy15215 453 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKI 526 (1432)
Q Consensus 453 Fstya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~ 526 (1432)
+-.|...++.+.+.+.+.......-++...+..+.-+.. .| +.|+.+||+.+|++...+..++..
T Consensus 26 ~l~~~l~~~~~~~~~~~~~~~~~~glt~~q~~vL~~l~~--------~~-~~t~~eLa~~l~~~~~~vs~~l~~ 90 (161)
T 3e6m_A 26 FLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSA--------YG-ELTVGQLATLGVMEQSTTSRTVDQ 90 (161)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--------HS-EEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh--------CC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344555555555655555544434455444444433322 23 678999999999999999999753
No 344
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=37.57 E-value=36 Score=34.32 Aligned_cols=55 Identities=11% Similarity=0.265 Sum_probs=37.4
Q ss_pred HHHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1355 SMRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1355 ~~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.+...+...+. .|++.|-.||..-+..+ +.+.|..+||+.+++++++|.+++.+-
T Consensus 30 ~~~~~~~~~~~~~glt~~q~~vL~~l~~~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L 86 (168)
T 3u2r_A 30 RMKAIEEEIFSQFELSAQQYNTLRLLRSVH-PEGMATLQIADRLISRAPDITRLIDRL 86 (168)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TSCEEHHHHHHHC---CTHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHhcC-CCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 34455555554 49999999887665432 245699999999999999998766554
No 345
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.53 E-value=43 Score=29.15 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=42.1
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhh
Q psy15215 1366 SLTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRY 1420 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~ 1420 (1432)
..++.+..+|...|..... .....+++|..+|+|...|+.+...-+.+.|+..+.
T Consensus 14 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 14 KKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred cCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 3677777788777754431 233578999999999999999999999998886543
No 346
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=37.46 E-value=26 Score=35.92 Aligned_cols=37 Identities=5% Similarity=0.109 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
..++.. +-.+|--.|. |++|+|+.+|||+.+++++++
T Consensus 89 ~~s~~~--lk~lR~~~gl----TQ~elA~~LGvsr~tis~yE~ 125 (170)
T 2auw_A 89 EVSHEM--FGDWMHRNNL----SLTTAAEALGISRRMVSYYRT 125 (170)
T ss_dssp CCCHHH--HHHHHHHTTC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCcHH--HHHHHHHcCC----CHHHHHHHhCCCHHHHHHHHc
Confidence 355554 4445554555 999999999999999999886
No 347
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=37.45 E-value=37 Score=29.01 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchh
Q psy15215 1367 LTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 1419 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~ 1419 (1432)
+++.+..+|...|-.... ......+||..+|+|...|+.+...-..+.|+..+
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 14 FTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 677777788777754431 12246789999999999999999999888887544
No 348
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=37.38 E-value=56 Score=27.67 Aligned_cols=53 Identities=21% Similarity=0.180 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCch
Q psy15215 1366 SLTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 1418 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~ 1418 (1432)
.+++.+..+|...|..... ....-.++|..+|+|...|+.+...-..+.|+..
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 9 HFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 3678888888888865432 3346789999999999999999988888777643
No 349
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=37.33 E-value=35 Score=33.24 Aligned_cols=54 Identities=15% Similarity=0.224 Sum_probs=39.1
Q ss_pred HHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy15215 1357 RSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRK 1413 (1432)
Q Consensus 1357 ~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~k 1413 (1432)
...+...+. .|++.+..||..-+..+ +.|..+||+.+|+|+++|.+.+.+-.++
T Consensus 26 ~~~~~~~~~~~~l~~~~~~iL~~l~~~~---~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 26 TKQYKPLLDKLNITYPQYLALLLLWEHE---TLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp HTTSHHHHTTTCCCHHHHHHHHHHHHHS---EEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 334455554 48999988887655322 4599999999999999999877655443
No 350
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.22 E-value=54 Score=28.69 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=30.1
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhc-----ccchhHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQF-----DVTRERIRQ 615 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l-----~is~~~v~~ 615 (1432)
+++++...||.+-...+ +.+.|.+||++.+ ++|..+|.+
T Consensus 14 ~~t~~r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~is~~TVyR 57 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEIGLATVYR 57 (83)
T ss_dssp CCCHHHHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CcCHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCCCHhhHHH
Confidence 48898888887654321 1467999999999 999999983
No 351
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=37.14 E-value=43 Score=27.62 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCc
Q psy15215 1366 SLTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP 1417 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~ 1417 (1432)
.+++.+..+|...|..... ....-.++|..+|+|...|+.+...-..+.|+.
T Consensus 5 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred ccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 3678888888888755431 112467899999999999999999888888763
No 352
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=37.13 E-value=35 Score=30.12 Aligned_cols=29 Identities=3% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy15215 1385 SDHTLEEVGKQFDVTRERIRQIEAKALRK 1413 (1432)
Q Consensus 1385 ~~~t~~EIa~~l~vs~~~Vrq~~~rAl~k 1413 (1432)
...|..|+|+.|+||..|||.-+.+=-++
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~Le~~ 43 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQLESM 43 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHHC
No 353
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=37.04 E-value=28 Score=34.41 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=25.7
Q ss_pred HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1374 VLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1374 Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+-.+|-..|+ |..++|+.+|+|+++|+++++-
T Consensus 73 L~~~R~~~gl----Tq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 73 FVSLRMKKGF----TQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp HHHHHHHTTC----CHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHcC
Confidence 3345554556 9999999999999999999874
No 354
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=36.90 E-value=47 Score=27.44 Aligned_cols=51 Identities=8% Similarity=0.209 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Q psy15215 1366 SLTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 1416 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~ 1416 (1432)
.+++.+..+|...|..... ....-.++|..+|+|...|+.+...-..+.|+
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 9 AFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3678888888888765431 22346789999999999999999888777765
No 355
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=36.81 E-value=27 Score=32.48 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=37.8
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhhhHHhh
Q psy15215 1371 ESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIF 1426 (1432)
Q Consensus 1371 er~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~~l~~~ 1426 (1432)
-..|+........ |+.|.++.||||.+.|.++.....+.--...+......|
T Consensus 39 K~~VV~~v~~g~l----S~~EAa~ry~Is~~ei~~W~r~y~~~G~~aLr~t~~q~~ 90 (101)
T 2oa4_A 39 KIAVVRGVIYGLI----TLAEAKQTYGLSDEEFNSWVSALAEHGKDALKVTALKKY 90 (101)
T ss_dssp HHHHHHHHHHTTC----CHHHHHHTTCSSHHHHHHHHHHHHCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhCCC----CHHHHHHHhCCCHHHHHHHHHHHHHHhHHHhccccchhh
Confidence 3447776666666 999999999999999999998876554444444444433
No 356
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=36.80 E-value=31 Score=35.90 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1369 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1369 ~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+|.+.|+.+-- ..+.+.|..|+|+.||||+.||++.+.+
T Consensus 21 ~R~~~Il~~L~--~~~~~~s~~eLa~~l~vS~~Ti~rdi~~ 59 (187)
T 1j5y_A 21 ERLKSIVRILE--RSKEPVSGAQLAEELSVSRQVIVQDIAY 59 (187)
T ss_dssp HHHHHHHHHHH--HCSSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 56666665532 1123469999999999999999988764
No 357
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=36.79 E-value=33 Score=31.02 Aligned_cols=39 Identities=10% Similarity=0.144 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1368 TPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1368 ~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
++....||..-... .+.|..|||+.+|+|+++|.+++++
T Consensus 15 ~~~~~~iL~~L~~~---~~~~~~ela~~l~is~~tvs~~l~~ 53 (100)
T 1ub9_A 15 NPVRLGIMIFLLPR---RKAPFSQIQKVLDLTPGNLDSHIRV 53 (100)
T ss_dssp SHHHHHHHHHHHHH---SEEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhc---CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 45666676543321 2359999999999999999977654
No 358
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=36.74 E-value=41 Score=30.36 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=29.0
Q ss_pred HHHHhcC-CHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHH
Q psy15215 571 KDILNSL-TPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQ 615 (1432)
Q Consensus 571 ~~~L~~L-~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~ 615 (1432)
..++..| ++.+..||..-. .+.+.|..|||+.+|+|+++|++
T Consensus 15 ~~~~~~l~~~~~~~il~~l~---~~~~~s~~ela~~l~is~~tvs~ 57 (99)
T 3cuo_A 15 AALLKAMSHPKRLLILCMLS---GSPGTSAGELTRITGLSASATSQ 57 (99)
T ss_dssp HHHHHHHCSHHHHHHHHHHT---TCCSEEHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhCChHHHHHHHHHH---hCCCcCHHHHHHHHCcCHHHHHH
Confidence 3344444 366666775443 23467999999999999999974
No 359
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=36.73 E-value=44 Score=30.31 Aligned_cols=53 Identities=13% Similarity=0.025 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHhcccCCCCC----CHHHHHHHhCCCHHHHHHHHHHHHHHhhCchh
Q psy15215 1367 LTPRESKVLRMRFGIEMSSDH----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 1419 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~~~~----t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~ 1419 (1432)
||+....||.--|......+| .-.++|..+|+|...|+.+...++++.+.+..
T Consensus 12 l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 788888888877765322222 34689999999999999999999999987653
No 360
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.72 E-value=43 Score=29.46 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHhcccCC-----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Q psy15215 1367 LTPRESKVLRMRFGIEMS-----SDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 1416 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~-----~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~ 1416 (1432)
+++.+..+|...|-..+. .....++||..+|+|...|+.+......|.|+
T Consensus 15 ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk 69 (80)
T 2da4_A 15 FSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRL 69 (80)
T ss_dssp CCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhh
Confidence 688888888888865521 11246789999999999999999888888776
No 361
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=36.59 E-value=37 Score=33.64 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.|++.++.||.+-... ...|+.|||+.+|+|+++|+++
T Consensus 4 ~ld~~~~~iL~~L~~~---~~~s~~ela~~lg~s~~tv~~~ 41 (150)
T 2w25_A 4 ALDDIDRILVRELAAD---GRATLSELATRAGLSVSAVQSR 41 (150)
T ss_dssp CCCHHHHHHHHHHHHC---TTCCHHHHHHHHTSCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHH
Confidence 4888888888754322 3469999999999999999743
No 362
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=36.58 E-value=37 Score=32.78 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
.|++.+..||..-+..+ +.|..+||+.+|+|+++|.+.+.+-.
T Consensus 33 ~lt~~~~~iL~~l~~~~---~~t~~ela~~l~~s~~~vs~~l~~Le 75 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQQG---EMESYQLANQACILRPSMTGVLARLE 75 (142)
T ss_dssp TCCHHHHHHHHHHHHHC---SEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 59999999887755422 45999999999999999987765543
No 363
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=36.56 E-value=24 Score=33.25 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=20.0
Q ss_pred CHHHHHHHhCCCHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
|.+++|+.+|||+++|+++++
T Consensus 36 tq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 36 SQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp CHHHHHHHHTCCHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 999999999999999999885
No 364
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=36.55 E-value=37 Score=34.23 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.|++.++.||.+-... ...|+.|||+.+|+|+++|+++
T Consensus 7 ~ld~~~~~il~~L~~~---~~~s~~ela~~lg~s~~tv~~~ 44 (162)
T 2p5v_A 7 TLDKTDIKILQVLQEN---GRLTNVELSERVALSPSPCLRR 44 (162)
T ss_dssp CCCHHHHHHHHHHHHC---TTCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHH
Confidence 4888888888754322 2469999999999999999754
No 365
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=36.38 E-value=30 Score=32.43 Aligned_cols=29 Identities=3% Similarity=0.109 Sum_probs=24.0
Q ss_pred HHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1377 MRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1377 lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+|--.|+ |.+++|+.+|||+.+|+++++-
T Consensus 17 ~r~~~gl----sq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 17 LKKEHGL----KNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HHHHHTC----CHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHcCC----CHHHHHHHHCcCHHHHHHHHcC
Confidence 3443455 9999999999999999999873
No 366
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=36.37 E-value=27 Score=31.21 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=20.7
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|.+++|+.+|||+.+|+++++-
T Consensus 32 sq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 32 SQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 9999999999999999999874
No 367
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=36.33 E-value=38 Score=33.67 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.|++.++.||.+-... ...|+.|||+.+|+|+++|+++
T Consensus 5 ~ld~~d~~il~~L~~~---~~~s~~ela~~lg~s~~tv~~~ 42 (152)
T 2cg4_A 5 LIDNLDRGILEALMGN---ARTAYAELAKQFGVSPETIHVR 42 (152)
T ss_dssp CCCHHHHHHHHHHHHC---TTSCHHHHHHHHTSCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHH
Confidence 3788888888754322 3469999999999999999844
No 368
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=36.28 E-value=72 Score=28.82 Aligned_cols=49 Identities=16% Similarity=0.307 Sum_probs=31.7
Q ss_pred HHHHHHhcCC-HHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 569 VVKDILNSLT-PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 569 ~l~~~L~~L~-~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
.+..++..|. |....||.+-. . .+.|..|||+.+|+|.++|+ +.++.|.
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L~--~--~~~~~~ela~~l~is~~tvs----~~L~~L~ 61 (98)
T 3jth_A 12 KAVVLLKAMANERRLQILCMLH--N--QELSVGELCAKLQLSQSALS----QHLAWLR 61 (98)
T ss_dssp HHHHHHHHHCSHHHHHHHHHTT--T--SCEEHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh--c--CCCCHHHHHHHHCcCHHHHH----HHHHHHH
Confidence 3444555554 44555654432 2 36799999999999999997 4444453
No 369
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=36.19 E-value=35 Score=36.86 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=31.5
Q ss_pred ccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1365 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1365 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
..|+|-|+.....+.. ..++|.++||+.+|+|+.+|++.+.
T Consensus 116 ~~L~~~E~a~~~~~l~---~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALL---EMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3588888876555444 2356999999999999999988764
No 370
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=36.18 E-value=1.1e+02 Score=29.74 Aligned_cols=65 Identities=12% Similarity=0.034 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHH
Q psy15215 455 TYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKI 526 (1432)
Q Consensus 455 tya~~~ir~~i~~~i~~~~r~irip~~~~~~~~k~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~ 526 (1432)
.|..+.+.+.+.+.+.......-++...+..+.-+.. ..+.+.|+.+||+.+|++...+..++..
T Consensus 16 ~~~l~~~~~~~~~~~~~~~~~~glt~~q~~vL~~l~~-------~~~~~~t~~eLa~~l~~~~~~vs~~l~~ 80 (148)
T 3jw4_A 16 SYLIRSIGMKLKTSADARLAELGLNSQQGRMIGYIYE-------NQESGIIQKDLAQFFGRRGASITSMLQG 80 (148)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHH-------HTTTCCCHHHHHHC------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHh-------CCCCCCCHHHHHHHHCCChhHHHHHHHH
Confidence 3444455555555554444334455444443333221 2225679999999999999999888753
No 371
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=36.18 E-value=24 Score=32.86 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.2
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAKALRKLRH 1416 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~ 1416 (1432)
|..++|+.||||+.+||. |+++|..
T Consensus 45 s~~eLa~~lgVSr~tVr~----al~~L~~ 69 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVN----ALRKLES 69 (102)
T ss_dssp CHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 999999999999999995 5666654
No 372
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=36.03 E-value=30 Score=32.25 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=28.2
Q ss_pred CCHHHHH-HHHHHhhcc---cCCCCcHHHHHhhcccchhHHHHHHHH
Q psy15215 577 LTPRESK-VLRMRFGIE---MSSDHTLEEVGKQFDVTRERIRQIEAK 619 (1432)
Q Consensus 577 L~~rer~-Vl~lr~~~~---~~~~~t~~EIa~~l~is~~~v~~~~~r 619 (1432)
.|+..+. ++.+..-.+ ...+.|..+||..+|||+++++++..+
T Consensus 7 ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 7 FSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 4555553 555544322 011249999999999999999876654
No 373
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=35.89 E-value=23 Score=34.27 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhC-----CCHHHHHHHHH
Q psy15215 1368 TPRESKVLRMRFGIEMSSDHTLEEVGKQFD-----VTRERIRQIEA 1408 (1432)
Q Consensus 1368 ~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~-----vs~~~Vrq~~~ 1408 (1432)
..|=..++...+..+ +.++|++|+|+.+| +|++.|+++++
T Consensus 7 a~RL~~L~~~~~~~~-~~~lT~~elA~~~~~~G~~iS~s~is~iE~ 51 (123)
T 3qwg_A 7 AARLNRLFDTVYPPG-RGPHTSAEVIAALKAEGITMSAPYLSQLRS 51 (123)
T ss_dssp HHHHHHHHHHSSCTT-TCSCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhccCC-CCCCCHHHHHHHHcccCCCcCHHHHHHHHc
Confidence 344444454444333 35789999999998 99999999986
No 374
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=35.85 E-value=38 Score=32.64 Aligned_cols=26 Identities=8% Similarity=0.262 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1384 SSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1384 ~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+.+.|.+|||+.+|+|+.+|++++..
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~ 49 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSP 49 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45689999999999999999876543
No 375
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=35.77 E-value=32 Score=32.42 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=23.9
Q ss_pred HHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1377 MRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1377 lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+|-..|+ |.+++|+.+|||+.+|++++.-
T Consensus 31 ~R~~~gl----tq~elA~~~gis~~~is~~E~G 59 (111)
T 3mlf_A 31 LRTDYGL----TQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp HHHHTTC----CHHHHHHHHTSCHHHHHHHHHC
T ss_pred HHHHcCC----CHHHHHHHHCcCHHHHHHHHCC
Confidence 3443455 9999999999999999999873
No 376
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=35.66 E-value=19 Score=33.82 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=22.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
+|..|+|+.+|||..|+|.++..++
T Consensus 2 ~~i~e~A~~~gvs~~tLR~ye~~Gl 26 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHYDDIGL 26 (108)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHTS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 5999999999999999999998764
No 377
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=35.60 E-value=39 Score=28.08 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=17.9
Q ss_pred CHHHHHHHhCCCHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
+..+.|+.||||+.++...+.
T Consensus 35 n~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 688999999999999976543
No 378
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=35.59 E-value=53 Score=32.60 Aligned_cols=54 Identities=6% Similarity=0.044 Sum_probs=40.1
Q ss_pred HHHHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1355 SMRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1355 ~~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
.+...+...+. .|++.|..||..-+.. .+.|..|||+.+|+|+++|.+++.+-.
T Consensus 34 ~~~~~~~~~l~~~~lt~~q~~vL~~l~~~---~~~t~~eLa~~l~~~~~tvs~~l~~Le 89 (159)
T 3s2w_A 34 YGQIYIGKKIEPYGIGSGQFPFLMRLYRE---DGINQESLSDYLKIDKGTTARAIQKLV 89 (159)
T ss_dssp HHHHHHHHHHGGGTCCTTTHHHHHHHHHS---CSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHC---CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455566665 4999999988765542 346999999999999999997766543
No 379
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=35.53 E-value=34 Score=30.77 Aligned_cols=22 Identities=9% Similarity=0.300 Sum_probs=20.6
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|..++|+.+|||+.+|+++++.
T Consensus 23 tq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 23 SLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 9999999999999999999874
No 380
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=35.48 E-value=91 Score=34.86 Aligned_cols=54 Identities=19% Similarity=0.365 Sum_probs=42.3
Q ss_pred HHHHHHHHHH--ccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1355 SMRSVVKDIL--NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1355 ~~~~~l~~~L--~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
+....+.+.+ +.||+.-+++-.+|.- ..+.|++|+|+.+++|.+.|..++.|-.
T Consensus 230 ~~I~~i~e~~Gl~~Lp~~L~e~a~lRl~---~pdaSL~ELge~l~isKSgVnhRlrKL~ 285 (295)
T 3hyi_A 230 RAIELIKENMGLENLPEDLRRVALVRLR---NKELSLRELGKKLNLTKSQIYSKLKRII 285 (295)
T ss_dssp HHHHHHHHHTCGGGSCHHHHHHHHHHHH---CTTSCHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccCCHHHHHHHHHHHH---CccccHHHHHHHhCcCHHHHHHHHHHHH
Confidence 3344444443 6899999999999974 3457999999999999999998877653
No 381
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=35.42 E-value=26 Score=33.29 Aligned_cols=46 Identities=9% Similarity=0.179 Sum_probs=35.7
Q ss_pred HccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHHHHH
Q psy15215 1364 LNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFD----VTRERIRQIEAKALR 1412 (1432)
Q Consensus 1364 L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~----vs~~~Vrq~~~rAl~ 1412 (1432)
+..|++.|..||..-+- ..+.|..|||+.++ +|+++|..++.+-.+
T Consensus 5 ~~~lt~~~~~vL~~l~~---~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~ 54 (123)
T 1okr_A 5 TYEISSAEWEVMNIIWM---KKYASANNIIEEIQMQKDWSPKTIRTLITRLYK 54 (123)
T ss_dssp CCCCCHHHHHHHHHHHH---HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHh---CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH
Confidence 45799999998876543 23569999999999 899999887766443
No 382
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=35.25 E-value=75 Score=28.99 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=28.6
Q ss_pred HHHHHHhcCC-HHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHH
Q psy15215 569 VVKDILNSLT-PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQ 615 (1432)
Q Consensus 569 ~l~~~L~~L~-~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~ 615 (1432)
.+..++..|. |.-..||.+-. + .+.|..|||+.+|+|+++|++
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L~--~--~~~~~~ela~~l~is~~tvs~ 55 (102)
T 3pqk_A 12 EVANLLKTLSHPVRLMLVCTLV--E--GEFSVGELEQQIGIGQPTLSQ 55 (102)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHH--T--CCBCHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH--h--CCCCHHHHHHHHCcCHHHHHH
Confidence 3445555554 44444554432 1 247999999999999999974
No 383
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=35.25 E-value=67 Score=31.35 Aligned_cols=47 Identities=17% Similarity=0.158 Sum_probs=34.9
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 567 RSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 567 ~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
...+...+. .|++.+..||..-+.. .+.|..+||+.+|+++++|...
T Consensus 26 ~~~~~~~~~~~~lt~~~~~iL~~l~~~---~~~t~~ela~~l~~~~~~vs~~ 74 (152)
T 3bj6_A 26 TAAVERGTLREGVTVGQRAILEGLSLT---PGATAPQLGAALQMKRQYISRI 74 (152)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHS---TTEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhC---CCCCHHHHHHHHCCCHHHHHHH
Confidence 344444444 4999999988776542 2569999999999999998743
No 384
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=35.23 E-value=27 Score=30.05 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHH
Q psy15215 577 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 577 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
+++..-+-++ --.|+ |.+|+|+.+|+|+.+|++++.
T Consensus 11 ~~g~~lr~~R--~~~gl----tq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 11 VAPEFIVKVR--KKLSL----TQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp CCHHHHHHHH--HHTTC----CHHHHHHHHCSCTTHHHHHHT
T ss_pred CCHHHHHHHH--HHcCC----CHHHHHHHhCcCHHHHHHHHc
Confidence 4454444443 33455 999999999999999999875
No 385
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=35.17 E-value=33 Score=33.62 Aligned_cols=52 Identities=10% Similarity=0.167 Sum_probs=32.3
Q ss_pred HHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1358 SVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1358 ~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
..+...+. .|++.|-.||..-+..+ +.+.|..+||+.+|+|+++|..++.+-
T Consensus 28 ~~~~~~~~~~glt~~q~~vL~~l~~~~-~~~~t~~eLa~~l~~~~~~vs~~l~~L 81 (148)
T 3jw4_A 28 TSADARLAELGLNSQQGRMIGYIYENQ-ESGIIQKDLAQFFGRRGASITSMLQGL 81 (148)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHT-TTCCCHHHHHHC------CHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhCC-CCCCCHHHHHHHHCCChhHHHHHHHHH
Confidence 44444443 59999999987765432 135699999999999999998766543
No 386
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=34.85 E-value=70 Score=31.85 Aligned_cols=49 Identities=6% Similarity=0.093 Sum_probs=36.9
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 565 SMRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 565 ~~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.+...+...+. .|++.+..||..-+.. .+.|..+||+.+|+++++|...
T Consensus 30 ~~~~~~~~~l~~~glt~~q~~iL~~l~~~---~~~t~~eLa~~l~~~~~tvs~~ 80 (162)
T 3k0l_A 30 IISKYLTEHLSALEISLPQFTALSVLAAK---PNLSNAKLAERSFIKPQSANKI 80 (162)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHC---TTCCHHHHHHHHTSCGGGHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHC---CCCCHHHHHHHHCCCHHHHHHH
Confidence 34455555554 4999999998766543 2569999999999999999843
No 387
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=34.83 E-value=38 Score=29.71 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=29.9
Q ss_pred hcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcc----cchhHHHH
Q psy15215 575 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFD----VTRERIRQ 615 (1432)
Q Consensus 575 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~----is~~~v~~ 615 (1432)
..|++.|..||..-+. ..+.|..||++.++ +++++|..
T Consensus 5 ~~lt~~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s~~Tv~~ 46 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK---HSSINTNEVIKELSKTSTWSPKTIQT 46 (82)
T ss_dssp CCCCHHHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---CCCCCHHHHHHHHhhcCCccHHHHHH
Confidence 4699999999886654 23579999999997 67888874
No 388
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=34.83 E-value=49 Score=31.34 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=42.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHhhC
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQF-----DVTRERIRQIEAKALRKLRH 1416 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l-----~vs~~~Vrq~~~rAl~kLr~ 1416 (1432)
.||++|..+|.+ +....+...|-++|.+.+ .++..+|++.+++-++||..
T Consensus 41 ~Lt~~E~~LL~~-L~~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 41 DLTRAEYEILSL-LISKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp CSCHHHHHHHHH-HHHHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHH-HHHcCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 499999998866 444556788999999999 67899999999999999964
No 389
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=34.79 E-value=90 Score=27.86 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCC----CHHHHHHHhCCCHHHHHHHHHHHHHHhh
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDH----TLEEVGKQFDVTRERIRQIEAKALRKLR 1415 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~----t~~EIa~~l~vs~~~Vrq~~~rAl~kLr 1415 (1432)
.+++.+..+|...|......+| .-.++|..+|+|...|+.+....+.|.|
T Consensus 33 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 33 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4888888999888876322223 3568999999999999999988887765
No 390
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=34.78 E-value=70 Score=30.58 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=35.8
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHH
Q psy15215 567 RSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQ 615 (1432)
Q Consensus 567 ~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~ 615 (1432)
...+...+. .|++.+..||..-+..+ +.+.|..|||+.+++++++|..
T Consensus 23 ~~~~~~~~~~~~lt~~q~~vL~~l~~~~-~~~~t~~eLa~~l~~~~~tvs~ 72 (127)
T 2frh_A 23 DKLKSLIKKEFSISFEEFAVLTYISENK-EKEYYLKDIINHLNYKQPQVVK 72 (127)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTC-CSEEEHHHHHHHSSSHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCCHHHHHH
Confidence 344455554 49999999988766431 2457999999999999998874
No 391
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=34.56 E-value=87 Score=29.92 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=37.6
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHH
Q psy15215 565 SMRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIE 617 (1432)
Q Consensus 565 ~~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~ 617 (1432)
.+...+...+. .|++.+..||..-+.. .+.|..+||+.+|+++++|....
T Consensus 18 ~~~~~~~~~~~~~~lt~~~~~iL~~l~~~---~~~~~~~la~~l~~~~~tvs~~l 69 (138)
T 1jgs_A 18 KKDRLLNEYLSPLDITAAQFKVLCSIRCA---ACITPVELKKVLSVDLGALTRML 69 (138)
T ss_dssp HHHHHHHHHHTTTTSCHHHHHHHHHHHHH---SSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHhc---CCCCHHHHHHHHCCChHHHHHHH
Confidence 34556666665 3999999988776542 24599999999999999998543
No 392
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=34.51 E-value=47 Score=30.44 Aligned_cols=37 Identities=8% Similarity=0.150 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHH
Q psy15215 578 TPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIE 617 (1432)
Q Consensus 578 ~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~ 617 (1432)
.|....||..-... .+.|..|||+.+|+|+++|+++.
T Consensus 26 ~~~Rl~IL~~l~~~---~~~~~~ela~~l~is~stvs~hL 62 (99)
T 2zkz_A 26 HPMRLKIVNELYKH---KALNVTQIIQILKLPQSTVSQHL 62 (99)
T ss_dssp SHHHHHHHHHHHHH---SCEEHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHC---CCcCHHHHHHHHCcCHHHHHHHH
Confidence 46666677322211 24599999999999999998543
No 393
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=34.45 E-value=66 Score=31.06 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=28.9
Q ss_pred hcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHH
Q psy15215 575 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 575 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
.-+++.+-+-++ --.|+ |++++|+.+|+|+.+|++++.
T Consensus 69 ~~~~~~~l~~~R--~~~gl----sq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 69 ETVAPEFIVKVR--KKLSL----TQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp TTCCHHHHHHHH--HHTTC----CHHHHHHHHCSCTTHHHHHHH
T ss_pred cCCCHHHHHHHH--HHcCC----CHHHHHHHHCCCHHHHHHHHC
Confidence 346676555444 44456 999999999999999999875
No 394
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=34.30 E-value=47 Score=32.39 Aligned_cols=49 Identities=4% Similarity=0.142 Sum_probs=34.4
Q ss_pred HHHHHHHHH-h--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHH
Q psy15215 566 MRSVVKDIL-N--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIE 617 (1432)
Q Consensus 566 ~~~~l~~~L-~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~ 617 (1432)
+...+...+ . .|++.+..||..-+..+ +.|..|||+.+|+++++|....
T Consensus 24 ~~~~~~~~~~~~~~l~~~~~~iL~~l~~~~---~~t~~ela~~l~~~~~tvs~~l 75 (148)
T 3nrv_A 24 LMLKSSTAYTQKFGIGMTEWRIISVLSSAS---DCSVQKISDILGLDKAAVSRTV 75 (148)
T ss_dssp HHHC----CCGGGTCCHHHHHHHHHHHHSS---SBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHcCC---CCCHHHHHHHHCCCHHHHHHHH
Confidence 344555555 2 59999999987765433 5699999999999999998443
No 395
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=34.27 E-value=88 Score=32.93 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=30.6
Q ss_pred HccCCHHHHHHHHH-----Hhcc-----cCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1364 LNSLTPRESKVLRM-----RFGI-----EMSSDHTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1364 L~~L~~rer~Vl~l-----r~~~-----~~~~~~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
+...++.+|-.-.+ +++. ...-+.|.++||..+|+|+++|.+.++
T Consensus 148 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~ 202 (232)
T 2gau_A 148 LTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLS 202 (232)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHH
Confidence 45577777764333 4542 112457999999999999999975443
No 396
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=34.24 E-value=58 Score=30.09 Aligned_cols=39 Identities=8% Similarity=0.006 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHc
Q psy15215 489 ISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIA 527 (1432)
Q Consensus 489 ~~r~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~~~ 527 (1432)
+.++...+.+....++|.++||+.+|+++..+..+.+..
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 445555666777788999999999999999999997654
No 397
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=34.21 E-value=23 Score=30.13 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=18.8
Q ss_pred cHHHHHhhcccchhHHHHHHH
Q psy15215 598 TLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 598 t~~EIa~~l~is~~~v~~~~~ 618 (1432)
|+.+||+.+|+|+.+|+..+.
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 789999999999999997654
No 398
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=34.19 E-value=77 Score=31.12 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=36.4
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHH
Q psy15215 566 MRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIE 617 (1432)
Q Consensus 566 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~ 617 (1432)
+...+...+. .|++.+..||..-+.. .+.|..+||+.+|++.++|....
T Consensus 28 ~~~~~~~~l~~~~lt~~~~~iL~~l~~~---~~~t~~ela~~l~i~~~tvs~~l 78 (155)
T 3cdh_A 28 ASAQFHDHIRAQGLRVPEWRVLACLVDN---DAMMITRLAKLSLMEQSRMTRIV 78 (155)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHSSC---SCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHC---CCcCHHHHHHHHCCCHHHHHHHH
Confidence 3445555554 4999999988765532 35799999999999999998533
No 399
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=34.19 E-value=74 Score=31.13 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=35.1
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHH
Q psy15215 567 RSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIE 617 (1432)
Q Consensus 567 ~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~ 617 (1432)
...+...+. .|++.+..||..-. ..+.|..|||+.+|+++++|....
T Consensus 24 ~~~~~~~~~~~~lt~~q~~iL~~l~----~~~~t~~eLa~~l~~~~~~vs~~l 72 (151)
T 3kp7_A 24 AKLLKDLQTEYGISAEQSHVLNMLS----IEALTVGQITEKQGVNKAAVSRRV 72 (151)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHH----HSCBCHHHHHHHHCSCSSHHHHHH
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHH----cCCcCHHHHHHHHCCCHHHHHHHH
Confidence 344455554 49999999887652 345699999999999999998533
No 400
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=34.07 E-value=32 Score=31.32 Aligned_cols=43 Identities=9% Similarity=0.110 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHH----HHHhCCCHHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEV----GKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EI----a~~l~vs~~~Vrq~~~rAl 1411 (1432)
.|++.|-.||..-+.. .+.|..|| |+.+|+|+++|.+++.+-.
T Consensus 5 ~lt~~q~~iL~~l~~~---~~~~~~el~~~la~~l~is~~tvs~~l~~Le 51 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDN---EGIATYDLYKKVNAEFPMSTATFYDAKKFLI 51 (99)
T ss_dssp SSBCHHHHHHHHHTTC---TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4788888888665432 34699999 9999999999987765543
No 401
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=34.05 E-value=78 Score=30.78 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=35.9
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHH
Q psy15215 567 RSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIE 617 (1432)
Q Consensus 567 ~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~ 617 (1432)
...+...+. .|++.+..||..-+.. .+.|..+||+.+|+++++|....
T Consensus 28 ~~~~~~~~~~~~l~~~~~~iL~~l~~~---~~~t~~ela~~l~~~~~tvs~~l 77 (150)
T 2rdp_A 28 KQRGREILTNYPITPPQFVALQWLLEE---GDLTVGELSNKMYLACSTTTDLV 77 (150)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH---CSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHc---CCCCHHHHHHHHCCCchhHHHHH
Confidence 444555565 4999999988766542 24699999999999999998543
No 402
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=34.00 E-value=46 Score=28.41 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Q psy15215 1367 LTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 1416 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~ 1416 (1432)
-+..+..+|.-.|....- ......++|..+|+|+..|+.+...-+.|+|+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 355666777777765431 33467899999999999999999998888875
No 403
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=33.94 E-value=30 Score=28.86 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=19.4
Q ss_pred CHHHHHHHhCCCHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIE 1407 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~ 1407 (1432)
|..++|+.+|+|+++|++++
T Consensus 15 s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 89999999999999999988
No 404
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=33.89 E-value=20 Score=35.73 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
+|+.|+|+.||||+++|+++++..
T Consensus 32 LTv~EVAe~LgVs~srV~~LIr~G 55 (148)
T 2kfs_A 32 YDLPRVAELLGVPVSKVAQQLREG 55 (148)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHTT
T ss_pred EcHHHHHHHhCCCHHHHHHHHHCC
Confidence 399999999999999999987653
No 405
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=33.89 E-value=65 Score=31.10 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=36.6
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 565 SMRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 565 ~~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.+...+...+. .|++.+..||..-+.. .+.|..+||+.+|+|+++|...
T Consensus 13 ~~~~~~~~~~~~~~lt~~~~~iL~~l~~~---~~~t~~~la~~l~~s~~~vs~~ 63 (144)
T 1lj9_A 13 ALDSISNIEFKELSLTRGQYLYLVRVCEN---PGIIQEKIAELIKVDRTTAARA 63 (144)
T ss_dssp HHHHHHHHHTGGGTCTTTHHHHHHHHHHS---TTEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHC---cCcCHHHHHHHHCCCHhHHHHH
Confidence 34455666665 4999999988765532 2569999999999999998843
No 406
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=33.88 E-value=93 Score=30.36 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=35.2
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 567 RSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 567 ~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
...+...+. .||+.+..||..-+.. .+.|..+||+.+|+++++|.+.
T Consensus 27 ~~~~~~~~~~~~lt~~q~~iL~~l~~~---~~~~~~eLa~~l~~~~~~vs~~ 75 (149)
T 4hbl_A 27 AQFYEKKLKQFGITYSQYLVMLTLWEE---NPQTLNSIGRHLDLSSNTLTPM 75 (149)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHS---SSEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHC---CCCCHHHHHHHHCCCHHHHHHH
Confidence 344444444 4999999988776533 3569999999999999999843
No 407
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=33.79 E-value=34 Score=31.71 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.|..++|+.+|||+++|+++++-
T Consensus 15 ltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 15 YSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 39999999999999999999874
No 408
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=33.76 E-value=30 Score=31.42 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=20.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.|..++|+.+|||+++|+++++-
T Consensus 18 ltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 18 LSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp CCHHHHHHHHCCCHHHHHHHTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 39999999999999999998863
No 409
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.72 E-value=42 Score=28.64 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCch
Q psy15215 1367 LTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 1418 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~ 1418 (1432)
+++.+..+|...|-.... ......+||..+|+|...|+.+...-..+.|+..
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 14 FTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 677777788777754321 1234678999999999999999988888877643
No 410
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.67 E-value=45 Score=29.38 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchh
Q psy15215 1367 LTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 1419 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~ 1419 (1432)
+++.+..+|...|..... ......+||..+|+|...|+.+...-+.|.|+...
T Consensus 24 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 24 FTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 666666777766654431 12246789999999999999999999888887544
No 411
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=33.60 E-value=51 Score=33.68 Aligned_cols=51 Identities=6% Similarity=0.017 Sum_probs=37.8
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 566 MRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 566 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
+...+...+. .|++.+..||..-+..+.+.+.|..+||+.+|+++++|...
T Consensus 54 ~~~~~~~~l~~~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~ 106 (181)
T 2fbk_A 54 LGREIERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNR 106 (181)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHH
Confidence 3445555554 49999999998776544323469999999999999988743
No 412
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=33.59 E-value=85 Score=30.07 Aligned_cols=38 Identities=5% Similarity=0.119 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.|++.+..||..-+.. .+.|..+||+.+|+|+++|...
T Consensus 28 ~l~~~~~~iL~~l~~~---~~~~~~ela~~l~is~~~vs~~ 65 (142)
T 3bdd_A 28 GISLTRYSILQTLLKD---APLHQLALQERLQIDRAAVTRH 65 (142)
T ss_dssp SSCHHHHHHHHHHHHH---CSBCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC---CCCCHHHHHHHHCCCHHHHHHH
Confidence 6999999988776542 2469999999999999999843
No 413
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=33.56 E-value=47 Score=27.08 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=38.1
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Q psy15215 1366 SLTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 1416 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~ 1416 (1432)
.+++.+..+|...|..+.. ....-.+||..+|+|...|+.+...-..+.|+
T Consensus 6 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 6 PFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 3677888888887765431 12346789999999999999999887777653
No 414
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=33.49 E-value=60 Score=31.40 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHhc-ccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFG-IEMS-SDHTLEEVGKQFDVTRERIRQIEAKALR 1412 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~-~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~ 1412 (1432)
.|++.|-.|+..-+. ...+ ..-|..+||+.+|+|..+|.+.+.+=.+
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~ 77 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQ 77 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478888776544332 1112 3369999999999999999987665443
No 415
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.46 E-value=46 Score=28.74 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhhh
Q psy15215 1367 LTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYY 1421 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~~ 1421 (1432)
.++.+..+|...|-.... .....+++|..+|+|...|+.+...-..|.|+.....
T Consensus 13 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 13 KTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCC
Confidence 567777777777654321 2235778999999999999999999999888755443
No 416
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=33.43 E-value=64 Score=29.16 Aligned_cols=51 Identities=25% Similarity=0.187 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHhhCc
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQF-----DVTRERIRQIEAKALRKLRHP 1417 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l-----~vs~~~Vrq~~~rAl~kLr~~ 1417 (1432)
.||++|..+|.+- ....|...|-++|.+.+ ..+..+|++.+++-++||...
T Consensus 22 ~Lt~~E~~lL~~L-~~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~~ 77 (96)
T 3rjp_A 22 SLTKREYDLLNIL-MTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIP 77 (96)
T ss_dssp ECCHHHHHHHHHH-HHTTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHCCT
T ss_pred EcCHHHHHHHHHH-HhCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhccc
Confidence 4999999998764 45556888999999987 378899999999999999764
No 417
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=33.40 E-value=1.7e+02 Score=31.77 Aligned_cols=36 Identities=11% Similarity=0.051 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHH
Q psy15215 1280 SRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMK 1315 (1432)
Q Consensus 1280 ~~~~~~~~~~~g~~pt~~eia~~~~~~~~~v~~~~~ 1315 (1432)
.++...+.+....+.|.+++|+.+|+|+..+.++.+
T Consensus 172 ~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 172 EKISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444555566788999999999999999999875
No 418
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=33.37 E-value=59 Score=27.60 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCch
Q psy15215 1366 SLTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 1418 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~ 1418 (1432)
.+++.+..+|...|..... ....-.+||..+|+|...|+.+...-..+.|+..
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 8 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 3678888888888765432 3346789999999999999999988877777644
No 419
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=33.32 E-value=26 Score=31.74 Aligned_cols=22 Identities=5% Similarity=0.193 Sum_probs=0.0
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|..|+|+.||||..|||.-+.+
T Consensus 18 sv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 18 EAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp EHHHHHHHTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHHH
No 420
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=33.30 E-value=26 Score=37.13 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=23.9
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1372 SKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1372 r~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
+.|+.++ ..|. |..+||+.||+|++||.+++.
T Consensus 166 ~~i~~~~-~~G~----s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 166 HRVVEML-EEGQ----AISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHHHH-HTTC----CHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHH-HcCC----CHHHHHHHHCcCHHHHHHHHh
Confidence 3455543 3444 999999999999999987654
No 421
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=33.26 E-value=38 Score=28.94 Aligned_cols=52 Identities=12% Similarity=0.193 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCch
Q psy15215 1367 LTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 1418 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~ 1418 (1432)
+++.+..+|...|..... ......+||..+|+|...|+.+...-..+.|+..
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 14 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 677777888777754431 2234678999999999999999988888877643
No 422
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=33.23 E-value=63 Score=30.89 Aligned_cols=48 Identities=2% Similarity=0.122 Sum_probs=36.2
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 566 MRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 566 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
+...+...+. .|++.+..||..-+.. .+.|..+||+.+|+++++|...
T Consensus 18 ~~~~~~~~~~~~~l~~~~~~iL~~l~~~---~~~~~~ela~~l~~~~~tvs~~ 67 (139)
T 3bja_A 18 LQKNLDKAIEQYDISYVQFGVIQVLAKS---GKVSMSKLIENMGCVPSNMTTM 67 (139)
T ss_dssp HHHHHHHHTGGGTCCHHHHHHHHHHHHS---CSEEHHHHHHHCSSCCTTHHHH
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHc---CCcCHHHHHHHHCCChhHHHHH
Confidence 3445555555 4999999998776542 2469999999999999999843
No 423
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=33.00 E-value=45 Score=34.08 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=30.1
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.|++.++.||.+--.. ...|+.|||+.+|+|+++|+++
T Consensus 24 ~ld~~d~~IL~~L~~~---~~~s~~eLA~~lglS~~tv~~r 61 (171)
T 2e1c_A 24 PLDEIDKKIIKILQND---GKAPLREISKITGLAESTIHER 61 (171)
T ss_dssp CCCHHHHHHHHHHHHC---TTCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHH
Confidence 5889999888754322 2469999999999999999854
No 424
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=32.97 E-value=67 Score=31.04 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 565 SMRSVVKDILNS--LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 565 ~~~~~l~~~L~~--L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.+...+...+.. ||+.|..||..-+. ..+.|..+||+.+++++++|...
T Consensus 20 ~~~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~ 70 (140)
T 3hsr_A 20 EIIKKYTNYLKEYDLTYTGYIVLMAIEN---DEKLNIKKLGERVFLDSGTLTPL 70 (140)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHSCT---TCEEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHH
Confidence 344555556654 99999988876553 24679999999999999999843
No 425
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=32.90 E-value=41 Score=32.18 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=24.0
Q ss_pred HHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1377 MRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1377 lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+|--.|+ |.+++|+.+|||+++|+++++-
T Consensus 20 ~R~~~gl----sq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 20 ARKKQGL----TREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp HHHHTTC----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred HHHHcCC----CHHHHHHHhCcCHHHHHHHHCC
Confidence 3444455 9999999999999999999864
No 426
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=32.88 E-value=40 Score=28.99 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhh
Q psy15215 1367 LTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRY 1420 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~ 1420 (1432)
+++.+...|.-.|..... ....-.++|..+|+|...|+.+...-+.|.|+...+
T Consensus 11 ~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 667777777776654431 123467899999999999999998888888775543
No 427
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=32.88 E-value=62 Score=31.53 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy15215 1369 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRK 1413 (1432)
Q Consensus 1369 ~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~k 1413 (1432)
.|.+.|... |. |. +..|+|.++|+|..+|++|+++..+.
T Consensus 81 ~Rn~~I~~~-f~-G~----n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 81 IRDLRIWND-FN-GR----NVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp HHHHHHHHH-CC-SS----CHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-hC-CC----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 566666654 42 55 99999999999999999999877654
No 428
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=32.67 E-value=70 Score=29.67 Aligned_cols=43 Identities=14% Similarity=0.269 Sum_probs=29.2
Q ss_pred HHHHHhcCC-HHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 570 VKDILNSLT-PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 570 l~~~L~~L~-~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
+..++..|. +....||..-. ..+.|..|||+.+|+|+++|++.
T Consensus 11 ~~~~~~~l~~~~r~~IL~~L~----~~~~~~~ela~~l~is~~tv~~~ 54 (114)
T 2oqg_A 11 LASVFAALSDETRWEILTELG----RADQSASSLATRLPVSRQAIAKH 54 (114)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH----HSCBCHHHHHHHSSSCHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHH
Confidence 344455554 55666666432 13469999999999999999843
No 429
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=32.67 E-value=43 Score=28.60 Aligned_cols=53 Identities=6% Similarity=0.060 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchh
Q psy15215 1367 LTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 1419 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~ 1419 (1432)
+++.+..+|...|..... ....-.+||..+|+|...|+.+...-..+.|+...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 14 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 677777788777754431 12246789999999999999999998888877543
No 430
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=32.63 E-value=32 Score=39.25 Aligned_cols=39 Identities=8% Similarity=0.267 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1369 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1369 ~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
+..++||.+-. ...+..+|-+|||+.|||||.+|++.++
T Consensus 3 ~~~~~iL~~L~-~~~g~~~Sg~eLa~~lgvSr~aV~k~i~ 41 (323)
T 3rkx_A 3 KYSQDVLQLLY-KNKPNYISGQSIAESLNISRTAVKKVID 41 (323)
T ss_dssp CHHHHHHHHHH-HHTTSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred hHHHHHHHHHH-hCCCCccCHHHHHHHHCCCHHHHHHHHH
Confidence 34556665532 2224567999999999999999986654
No 431
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=32.61 E-value=33 Score=34.57 Aligned_cols=47 Identities=13% Similarity=0.260 Sum_probs=31.6
Q ss_pred HHccCCHHHHHHHHHH--hcc---cCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1363 ILNSLTPRESKVLRMR--FGI---EMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1363 ~L~~L~~rer~Vl~lr--~~~---~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.=.++|+..+.-..+. -+. +.+.+.|..+||+.+|||++|+.++...
T Consensus 20 ~~r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 20 LKQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 3455777766654332 111 1112569999999999999999998873
No 432
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=32.51 E-value=39 Score=33.01 Aligned_cols=42 Identities=14% Similarity=0.390 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHH
Q psy15215 577 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625 (1432)
Q Consensus 577 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr 625 (1432)
|++.++.||..-.. +...|+.|||+.+|+|+++|++ .+++|.
T Consensus 2 ld~~~~~il~~L~~---~~~~~~~ela~~lg~s~~tv~~----~l~~L~ 43 (141)
T 1i1g_A 2 IDERDKIILEILEK---DARTPFTEIAKKLGISETAVRK----RVKALE 43 (141)
T ss_dssp CCSHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHH----HHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHH----HHHHHH
Confidence 66777788764321 1345999999999999999974 444553
No 433
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=32.50 E-value=91 Score=29.25 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=32.8
Q ss_pred HHHHHhc-CCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHH
Q psy15215 570 VKDILNS-LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRP 626 (1432)
Q Consensus 570 l~~~L~~-L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~ 626 (1432)
+..++.. .++.+..||.+-.. .+.|..+||+.+|+|.++|.+ .+++|.+
T Consensus 22 ~~~~~~~l~~~~~~~il~~L~~----~~~s~~ela~~l~is~stvsr----~l~~Le~ 71 (119)
T 2lkp_A 22 VASTLQALATPSRLMILTQLRN----GPLPVTDLAEAIGMEQSAVSH----QLRVLRN 71 (119)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHH----CCCCHHHHHHHHSSCHHHHHH----HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH----CCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 3334443 34677777766543 245999999999999999984 4445543
No 434
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=32.41 E-value=35 Score=32.38 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=29.8
Q ss_pred HHccCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1363 ILNSLT-PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1363 ~L~~L~-~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
++.-|+ |....||.+-.. .+.|..|||+.+|+|+++|++.++.
T Consensus 11 ~~~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~is~~tvs~hL~~ 54 (118)
T 3f6o_A 11 IFQALADPTRRAVLGRLSR----GPATVSELAKPFDMALPSFMKHIHF 54 (118)
T ss_dssp HHHHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCSCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 344443 555556655442 3469999999999999999976543
No 435
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=32.39 E-value=47 Score=33.51 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHH
Q psy15215 577 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIE 617 (1432)
Q Consensus 577 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~ 617 (1432)
|.+.+++||.+--. +...|+.|||+.+|+|+++|+.+.
T Consensus 1 lD~~d~~il~~L~~---~~~~s~~~la~~lg~s~~tv~~rl 38 (162)
T 3i4p_A 1 MDRLDRKILRILQE---DSTLAVADLAKKVGLSTTPCWRRI 38 (162)
T ss_dssp CCHHHHHHHHHHTT---CSCSCHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---CCCCCHHHHHHHHCcCHHHHHHHH
Confidence 45667777765432 234599999999999999998543
No 436
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=32.35 E-value=33 Score=31.07 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=22.4
Q ss_pred CCCHHHHHHHhCCCHHH-HHHHHHHHHH
Q psy15215 1386 DHTLEEVGKQFDVTRER-IRQIEAKALR 1412 (1432)
Q Consensus 1386 ~~t~~EIa~~l~vs~~~-Vrq~~~rAl~ 1412 (1432)
+.|..|||+.+|+|+++ |.+++.+-.+
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~ 57 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIR 57 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 56999999999999999 8877655443
No 437
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=32.25 E-value=68 Score=32.13 Aligned_cols=51 Identities=12% Similarity=0.295 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 565 SMRSVVKDILNS--LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 565 ~~~~~l~~~L~~--L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.+...+...+.. |++.|..||..-+..+ +.+.|..+||+.+|+++++|...
T Consensus 30 ~~~~~~~~~~~~~glt~~q~~vL~~l~~~~-~~~~t~~eLa~~l~~~~~tvs~~ 82 (168)
T 3u2r_A 30 RMKAIEEEIFSQFELSAQQYNTLRLLRSVH-PEGMATLQIADRLISRAPDITRL 82 (168)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TSCEEHHHHHHHC---CTHHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHhcC-CCCcCHHHHHHHHCCChhhHHHH
Confidence 344555666654 9999999987665432 24669999999999999998743
No 438
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=32.19 E-value=90 Score=32.66 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHccCCHHH--HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1344 MLAPSDAALNASMRSVVKDILNSLTPRE--SKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1344 ~~~p~~~~~~~~~~~~l~~~L~~L~~re--r~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
+.+|++..+. ...|..++. .+|-+ ..|-.++--.|. |..++|+.+|+|.++|++++.
T Consensus 7 ~~~~~~~~~~---~~~ie~~~~-e~p~~l~~~Ik~~l~~~gi----tQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 7 NLSPEEAAHQ---KAVVETLLQ-EDPWRVAKMVKSYLQQHNI----PQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp SCCHHHHHHH---HHHHHHHTT-SCHHHHHHHHHHHHHHTTC----CHHHHHHHHCCCHHHHHHHHH
T ss_pred hcCCchhHHH---HHHHHHHHc-cCHHHHHHHHHHHHHHcCC----CHHHHHHHhCCChHHHHHHHh
Confidence 4577776654 344444443 23332 233333333345 999999999999999999975
No 439
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=32.19 E-value=13 Score=31.73 Aligned_cols=24 Identities=8% Similarity=0.274 Sum_probs=22.3
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
|.+|+|+.||||+.|+.++...++
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTTTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHHCCC
Confidence 889999999999999999998865
No 440
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=32.18 E-value=69 Score=25.91 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Q psy15215 1366 SLTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKL 1414 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kL 1414 (1432)
.+++.+..+|...|-.+.. ......++|..+|+|...|+.+...-..|.
T Consensus 8 ~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 8 LFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 3678888888888764431 223467899999999999999988766654
No 441
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=32.13 E-value=21 Score=38.48 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=32.3
Q ss_pred ccCCHHHHHHHHHHhcccCCCCCCH--HHHHHHhCCCHHHHHHHHHH
Q psy15215 1365 NSLTPRESKVLRMRFGIEMSSDHTL--EEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1365 ~~L~~rer~Vl~lr~~~~~~~~~t~--~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+.||+.+..+|..-|.... .+.|. .+||+.+|+|+++|++.+.+
T Consensus 2 ~~lt~~~e~~L~~L~~l~~-~~~~~~~~~La~~l~vs~~tvs~~l~~ 47 (230)
T 1fx7_A 2 NELVDTTEMYLRTIYDLEE-EGVTPLRARIAERLDQSGPTVSQTVSR 47 (230)
T ss_dssp CTTSSHHHHHHHHHHHHHH-HTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4588888888766554332 23456 99999999999999976654
No 442
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=32.13 E-value=44 Score=32.34 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
.|++.+..||..-+..+ +.|..+||+.+|+|+++|++.+.+-
T Consensus 34 ~l~~~~~~iL~~l~~~~---~~~~~ela~~l~~~~~tvs~~l~~L 75 (142)
T 2bv6_A 34 NLTYPQFLVLTILWDES---PVNVKKVVTELALDTGTVSPLLKRM 75 (142)
T ss_dssp TCCHHHHHHHHHHHHSS---EEEHHHHHHHTTCCTTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC---CcCHHHHHHHHCCChhhHHHHHHHH
Confidence 59999999887765322 4599999999999999998766543
No 443
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.11 E-value=43 Score=28.63 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchh
Q psy15215 1367 LTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 1419 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~ 1419 (1432)
+++.+..+|...|-.... ......+||..+|+|...|+.+...-..+.|+...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 14 YSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 677777888877754431 12346789999999999999999988888877543
No 444
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=31.99 E-value=50 Score=27.19 Aligned_cols=51 Identities=18% Similarity=0.087 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Q psy15215 1366 SLTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 1416 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~ 1416 (1432)
.+++.+..+|...|..... ....-.++|..+|+|...|+.+......+.|+
T Consensus 7 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 7 AFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 3677788888887765431 22346789999999999999999887777654
No 445
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=31.90 E-value=1.1e+02 Score=26.54 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhcccCCC---CCCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Q psy15215 1353 NASMRSVVKDILNSLTPRESKVLRMRFGIEMSS---DHTLEEVGKQFDVTRERIRQIEAKALRKLRH 1416 (1432)
Q Consensus 1353 ~~~~~~~l~~~L~~L~~rer~Vl~lr~~~~~~~---~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~ 1416 (1432)
...+..++. ..++++++.|...--+.=+.. ..++++||..+|++...|.. +++.|++
T Consensus 15 ~ehL~~Ql~---~~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~----vL~~lQ~ 74 (76)
T 2k9l_A 15 LEELQQNIK---LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEK----VRQKVLR 74 (76)
T ss_dssp HHHHHHHHH---HHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHH----HHHHHHT
T ss_pred HHHHHHHHc---ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHH----HHHHHhc
Confidence 556777776 358999988776544322222 35899999999999998865 4455443
No 446
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=31.89 E-value=40 Score=28.12 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.7
Q ss_pred CcHHHHHhhcccchhHHHHHHH
Q psy15215 597 HTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 597 ~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
.|+.++|+.+|+|+++|.+++.
T Consensus 17 lsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 17 MTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHc
Confidence 3999999999999999988764
No 447
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=31.87 E-value=43 Score=27.95 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=18.7
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
+..+.|+.||||+.++...+.+
T Consensus 34 n~~~aA~~LGisr~tL~rklkk 55 (63)
T 3e7l_A 34 DLKRTAEEIGIDLSNLYRKIKS 55 (63)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 6889999999999998876543
No 448
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=31.84 E-value=35 Score=32.47 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy15215 1369 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 1408 (1432)
Q Consensus 1369 ~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~ 1408 (1432)
|....||.+-. . .+.|..|||+.+|+|+++|++.++
T Consensus 21 ~~r~~IL~~L~-~---~~~~~~eLa~~lgis~stvs~~L~ 56 (118)
T 2jsc_A 21 PTRCRILVALL-D---GVCYPGQLAAHLGLTRSNVSNHLS 56 (118)
T ss_dssp HHHHHHHHHHH-T---TCCSTTTHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHH-c---CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 55566666533 1 245999999999999999987554
No 449
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=31.76 E-value=36 Score=28.22 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.7
Q ss_pred CcHHHHHhhcccchhHHHHHHH
Q psy15215 597 HTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 597 ~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
.|+.++|+.+|+|+.+|++++.
T Consensus 15 lsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 15 LNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 3999999999999999988764
No 450
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=31.69 E-value=32 Score=30.05 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=22.8
Q ss_pred HHhhcccCCCCcHHHHHhhcccchhHHHHHHH
Q psy15215 587 MRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 587 lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
+|--.|+ |++|+|+.+|+|+.+|.+++.
T Consensus 22 ~R~~~gl----tq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 22 ARSAAGI----TQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHHHTC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHcCC----CHHHHHHHHCcCHHHHHHHHC
Confidence 3444455 999999999999999998775
No 451
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.63 E-value=91 Score=32.76 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=37.7
Q ss_pred HHHHHHHHc--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1357 RSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1357 ~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
...+...+. .|++.+..||..-+.. .+.|..+||+.+|+++++|..++.+-
T Consensus 34 ~~~~~~~l~~~gLt~~q~~iL~~L~~~---~~~t~~eLa~~l~i~~stvs~~l~~L 86 (207)
T 2fxa_A 34 EKDWQQWLKPYDLNINEHHILWIAYQL---NGASISEIAKFGVMHVSTAFNFSKKL 86 (207)
T ss_dssp HHHHHHHTGGGTCCHHHHHHHHHHHHH---TSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHC---CCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444454 5999999998765542 24599999999999999998766553
No 452
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=31.48 E-value=52 Score=27.15 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Q psy15215 1366 SLTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKL 1414 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kL 1414 (1432)
.+++.+..+|...|..... ....-.++|..+|+|...|+.+......+.
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~ 60 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 60 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhcc
Confidence 4788888888888865431 223467899999999999999987766553
No 453
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=31.33 E-value=35 Score=32.17 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.5
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|.+++|+.+|||+++|+++++-
T Consensus 43 sq~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 43 TLRELAEASRVSPGYLSELERG 64 (117)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHCC
Confidence 9999999999999999999863
No 454
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=31.23 E-value=34 Score=28.25 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.7
Q ss_pred CcHHHHHhhcccchhHHHHHHH
Q psy15215 597 HTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 597 ~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
.|+.++|+.+|+|+.+|.+++.
T Consensus 19 ~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 19 IRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 3999999999999999988764
No 455
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=31.23 E-value=86 Score=31.43 Aligned_cols=47 Identities=9% Similarity=0.096 Sum_probs=35.3
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 567 RSVVKDILN----SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 567 ~~~l~~~L~----~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
...+...+. .|++.+..||..-+.. .+.|..+||+.+|++.++|.+.
T Consensus 29 ~~~~~~~l~~~~~~lt~~~~~iL~~L~~~---~~~t~~eLa~~l~is~~tvs~~ 79 (168)
T 2nyx_A 29 VAISAHSIAQVDENITIPQFRTLVILSNH---GPINLATLATLLGVQPSATGRM 79 (168)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHH---CSEEHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHH
Confidence 344445554 6999999998766542 2469999999999999999853
No 456
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.21 E-value=84 Score=30.76 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=35.2
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 567 RSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 567 ~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
...+...+. .|++.+..||..-+.. .+.|..+||+.+|+|+++|...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~iL~~l~~~---~~~t~~ela~~l~~s~~tvs~~ 71 (155)
T 1s3j_A 23 QPEMLESMEKQGVTPAQLFVLASLKKH---GSLKVSEIAERMEVKPSAVTLM 71 (155)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH---SEEEHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHc---CCCCHHHHHHHHCCCHHHHHHH
Confidence 344455554 6999999988776532 2469999999999999999843
No 457
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=31.19 E-value=36 Score=29.90 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=20.1
Q ss_pred CcHHHHHhhcccchhHHHHHHH
Q psy15215 597 HTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 597 ~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
.|+.++|+.+|+|+.+|.+++.
T Consensus 32 lsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 32 LTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 3999999999999999998775
No 458
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=31.18 E-value=29 Score=32.84 Aligned_cols=24 Identities=8% Similarity=0.378 Sum_probs=20.4
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhh
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAKALRKLR 1415 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~rAl~kLr 1415 (1432)
|..++|+.||||+.+||. |++.|.
T Consensus 35 s~~~La~~~~vSr~tvr~----al~~L~ 58 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSK----AYQSLL 58 (113)
T ss_dssp CHHHHHHHHTCCHHHHHH----HHHHHH
T ss_pred CHHHHHHHHCcCHHHHHH----HHHHHH
Confidence 899999999999999984 566664
No 459
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=30.99 E-value=78 Score=31.21 Aligned_cols=50 Identities=8% Similarity=0.055 Sum_probs=36.4
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHH
Q psy15215 566 MRSVVKDILN---SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIE 617 (1432)
Q Consensus 566 ~~~~l~~~L~---~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~ 617 (1432)
+...+...+. .|++.+..||..-+.. +.+.|..+||+.+|++.++|.+..
T Consensus 31 ~~~~~~~~l~~~~~l~~~~~~iL~~L~~~--~~~~~~~ela~~l~i~~~tvs~~l 83 (160)
T 3boq_A 31 VFGDLNRQLLDETGLSLAKFDAMAQLARN--PDGLSMGKLSGALKVTNGNVSGLV 83 (160)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHC--TTCEEHHHHHHHCSSCCSCHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHCCChhhHHHHH
Confidence 3344555554 5999999998776422 235699999999999999987533
No 460
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=30.84 E-value=56 Score=30.46 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=27.2
Q ss_pred HHHHHhcCC-HHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHH
Q psy15215 570 VKDILNSLT-PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQ 615 (1432)
Q Consensus 570 l~~~L~~L~-~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~ 615 (1432)
+..++..|. +....||.+-.. .+.|..|||+.+|+|+++|.+
T Consensus 15 ~~~~~~al~~~~r~~IL~~L~~----~~~s~~eLa~~lgis~stvs~ 57 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLLAQ----GERAVEAIATATGMNLTTASA 57 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHHTT----CCEEHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCcCHHHHHHHHCcCHHHHHH
Confidence 334444443 333456554331 356999999999999999984
No 461
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=30.83 E-value=37 Score=29.49 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=23.9
Q ss_pred HHHhhcccCCCCcHHHHHhhcccchhHHHHHHHH
Q psy15215 586 RMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 619 (1432)
Q Consensus 586 ~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~r 619 (1432)
.+|--.|+ |++++|+.+|+|+.+|.+++..
T Consensus 17 ~~R~~~gl----tq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 17 QYRKEKGY----SLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHTTC----CHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHcCC----CHHHHHHHHCcCHHHHHHHHcC
Confidence 34444455 9999999999999999988764
No 462
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=30.82 E-value=42 Score=28.68 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=19.9
Q ss_pred CcHHHHHhhcccchhHHHHHHH
Q psy15215 597 HTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 597 ~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
.|+.++|+.+|+|++++++++.
T Consensus 21 ~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 21 LTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHC
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 3999999999999999998775
No 463
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=30.78 E-value=52 Score=32.48 Aligned_cols=37 Identities=8% Similarity=0.287 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 577 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 577 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
|.+.+..||.+--. +...|+.|||+.+|+|+++|+++
T Consensus 1 ld~~~~~il~~L~~---~~~~~~~ela~~lg~s~~tv~~~ 37 (150)
T 2pn6_A 1 MDEIDLRILKILQY---NAKYSLDEIAREIRIPKATLSYR 37 (150)
T ss_dssp CCHHHHHHHHHHTT---CTTSCHHHHHHHHTSCHHHHHHH
T ss_pred CChHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHH
Confidence 45667777764321 23569999999999999999743
No 464
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=30.77 E-value=47 Score=35.85 Aligned_cols=55 Identities=24% Similarity=0.205 Sum_probs=35.4
Q ss_pred hcCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15215 575 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLAHDWLEQ 634 (1432)
Q Consensus 575 ~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~rAl~kLr~~l~~~~~~ 634 (1432)
..|+|-|+.....+.. ..++|.++||+.+|+|+.+|++...- .+|-..+...+..
T Consensus 116 ~~L~~~E~a~~~~~l~---~~g~t~~~iA~~lG~s~~~V~~~l~l--~~l~~~v~~~l~~ 170 (230)
T 1vz0_A 116 EDLSPVEEARGYQALL---EMGLTQEEVARRVGKARSTVANALRL--LQLPPEALEALER 170 (230)
T ss_dssp TTCCHHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHG--GGSCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHH--HcCCHHHHHHHHc
Confidence 3588887765444433 23569999999999999999875542 2343444444333
No 465
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=30.69 E-value=36 Score=31.74 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.5
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|.+++|+.+|||+++|++++.-
T Consensus 51 sq~elA~~~gis~~~is~~E~G 72 (107)
T 2jvl_A 51 TQAELGKEIGETAATVASYERG 72 (107)
T ss_dssp CHHHHHHHHTCCHHHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 9999999999999999998863
No 466
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=30.54 E-value=35 Score=27.97 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.2
Q ss_pred CCcHHHHHhhcccchhHHHHHHH
Q psy15215 596 DHTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 596 ~~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
+.|..++|+.+|+|++++++++.
T Consensus 14 g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 14 KISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 34999999999999999988765
No 467
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=30.53 E-value=36 Score=31.59 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=24.3
Q ss_pred HHHhhcccCCCCcHHHHHhhcccchhHHHHHHH
Q psy15215 586 RMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 586 ~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
.+|--.|+ |++++|+.+|+|+.++.+++.
T Consensus 43 ~~R~~~gl----TQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 43 QARLNRDL----TQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HHHHHTTC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHcCC----CHHHHHHHcCCCHHHHHHHHC
Confidence 45655556 999999999999999998885
No 468
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=30.44 E-value=59 Score=27.89 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHHhcc-cC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCch
Q psy15215 1366 SLTPRESKVLRMRFGI-EM-SSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 1418 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~-~~-~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~ 1418 (1432)
.+++.+..+|...|.. .. .......+||..+|+|...|+.+...-+.+.|+..
T Consensus 7 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 7 TMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 3678888889888863 32 12234679999999999999999988777776643
No 469
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=30.44 E-value=58 Score=31.76 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=35.9
Q ss_pred HccCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHHHH
Q psy15215 1364 LNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFD----VTRERIRQIEAKAL 1411 (1432)
Q Consensus 1364 L~~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~----vs~~~Vrq~~~rAl 1411 (1432)
+..||+.|..||..-+.. +.+.|..||++.++ ++.++|...+.+=.
T Consensus 4 ~~~lt~~e~~vL~~L~~~--~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe 53 (138)
T 2g9w_A 4 LTRLGDLERAVMDHLWSR--TEPQTVRQVHEALSARRDLAYTTVMAVLQRLA 53 (138)
T ss_dssp GGGCCHHHHHHHHHHHTC--SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhc--CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 457999999998776642 13569999999998 89999998776643
No 470
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=30.42 E-value=67 Score=29.72 Aligned_cols=51 Identities=14% Similarity=0.071 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHhhCc
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQF-----DVTRERIRQIEAKALRKLRHP 1417 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l-----~vs~~~Vrq~~~rAl~kLr~~ 1417 (1432)
.||++|..+|.+- ....|...|-++|.+.+ ..+..+|++.+++-++||...
T Consensus 31 ~Lt~~E~~lL~~L-~~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~~ 86 (106)
T 1gxq_A 31 EMGPTEFKLLHFF-MTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG 86 (106)
T ss_dssp CCCHHHHHHHHHH-HHSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHGGG
T ss_pred EcCHHHHHHHHHH-HHCCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhccc
Confidence 4999999998764 45556888999999988 578899999999999999753
No 471
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=30.29 E-value=54 Score=28.91 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCch
Q psy15215 1366 SLTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 1418 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~ 1418 (1432)
.+++.+..+|...|..... ....-.+||..+|+|...|+.+...-..+.|+..
T Consensus 24 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 24 TFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 3778888888887765431 1123678999999999999999988888887643
No 472
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=30.26 E-value=91 Score=30.49 Aligned_cols=50 Identities=14% Similarity=0.333 Sum_probs=37.1
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHHH
Q psy15215 565 SMRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIE 617 (1432)
Q Consensus 565 ~~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~ 617 (1432)
.+...+...+. .|++.+..||..-+.. .+.|..+||+.+|++.++|.+..
T Consensus 31 ~~~~~~~~~~~~~~l~~~~~~iL~~l~~~---~~~t~~ela~~l~~s~~tvs~~l 82 (153)
T 2pex_A 31 AMHKLYRGLLKALDLTYPQYLVMLVLWET---DERSVSEIGERLYLDSATLTPLL 82 (153)
T ss_dssp HHHHHHHHHTTTTTCCHHHHHHHHHHHHS---CSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhC---CCcCHHHHHHHhCCCcccHHHHH
Confidence 34455566664 4899999988766542 34699999999999999998533
No 473
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=30.21 E-value=31 Score=33.92 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhC-----CCHHHHHHHHH
Q psy15215 1367 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFD-----VTRERIRQIEA 1408 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~-----vs~~~Vrq~~~ 1408 (1432)
+..|=+.++...+..+ +.++|++|+|+.+| +|++.|+++++
T Consensus 8 ~~~RL~~L~~~~~~~~-~~~~T~~elA~~~~~~G~~is~s~is~~E~ 53 (135)
T 3r1f_A 8 FAARLNRLFDTVYPPG-RGPHTSAEVIAALKAEGITMSAPYLSQLRS 53 (135)
T ss_dssp HHHHHHHHHHHCCCTT-SCCCCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccC-CCCCCHHHHHHHHcccCCCcCHHHHHHHHC
Confidence 3344444444444333 35789999999999 99999999986
No 474
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=30.21 E-value=67 Score=31.03 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 576 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
.|++.+..||..-+.. .+.|..+||+.+|+|+++|...
T Consensus 30 ~l~~~~~~iL~~l~~~---~~~~~~~la~~l~~s~~tvs~~ 67 (145)
T 2a61_A 30 GITPAQFDILQKIYFE---GPKRPGELSVLLGVAKSTVTGL 67 (145)
T ss_dssp TCCHHHHHHHHHHHHH---CCBCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCHHHHHHHHCCCchhHHHH
Confidence 4999999988776542 2469999999999999998743
No 475
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=30.17 E-value=39 Score=29.95 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=20.0
Q ss_pred CcHHHHHhhcccchhHHHHHHH
Q psy15215 597 HTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 597 ~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
.|++++|+.+|+|+++|++++.
T Consensus 28 ltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 28 LTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHT
T ss_pred CCHHHHHHHhCcCHHHHHHHHC
Confidence 3999999999999999998875
No 476
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=30.14 E-value=57 Score=30.48 Aligned_cols=50 Identities=18% Similarity=0.150 Sum_probs=42.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHhhC
Q psy15215 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQF-----DVTRERIRQIEAKALRKLRH 1416 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l-----~vs~~~Vrq~~~rAl~kLr~ 1416 (1432)
.||++|..+|.+- ....|...|-++|.+.+ ..+..+|++.+++-++||..
T Consensus 34 ~Lt~~E~~lL~~L-~~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 88 (110)
T 2pmu_A 34 SLSPTEFTLLRYF-VINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 88 (110)
T ss_dssp CCCHHHHHHHHHH-HHTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHH-HHCCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhcc
Confidence 4899999988664 45556888999999988 57889999999999999975
No 477
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=30.07 E-value=36 Score=29.32 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.9
Q ss_pred CcHHHHHhhcccchhHHHHHHH
Q psy15215 597 HTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 597 ~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
.|++++|+.+|+|+++|.+++.
T Consensus 16 lsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 16 LTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHc
Confidence 3999999999999999998774
No 478
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=30.03 E-value=45 Score=28.10 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=19.7
Q ss_pred CcHHHHHhhcccchhHHHHHHH
Q psy15215 597 HTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 597 ~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
.|..++|+.+|+|++++.+++.
T Consensus 27 ~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 27 LSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHC
Confidence 3999999999999999988764
No 479
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=30.00 E-value=24 Score=30.71 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=20.6
Q ss_pred CCcHHHHHhhcccchhHHHHHHHH
Q psy15215 596 DHTLEEVGKQFDVTRERIRQIEAK 619 (1432)
Q Consensus 596 ~~t~~EIa~~l~is~~~v~~~~~r 619 (1432)
+.|+.++|+.+|+|+++|++.+.+
T Consensus 22 glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 22 KLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp SCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 449999999999999999977553
No 480
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.96 E-value=53 Score=28.83 Aligned_cols=52 Identities=13% Similarity=0.254 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCch
Q psy15215 1367 LTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 1418 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~ 1418 (1432)
+++.+..+|...|-.... ......+||..+|+|...|+.+...-..+.|+..
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 14 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 677777777777754431 1234678999999999999999988888887643
No 481
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=29.95 E-value=22 Score=33.47 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=22.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q psy15215 1387 HTLEEVGKQFDVTRERIRQIEAKAL 1411 (1432)
Q Consensus 1387 ~t~~EIa~~l~vs~~~Vrq~~~rAl 1411 (1432)
+|..|+|+.+|||+.|+|.++..++
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~Gl 27 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNIEL 27 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHTTS
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCCC
Confidence 4899999999999999999988654
No 482
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=29.90 E-value=59 Score=36.93 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1367 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
..++...|+.+-- .+...|.+|+|+.||||+.||++.+..
T Consensus 3 ~~~r~~~Il~~L~---~~~~~s~~eLa~~l~vS~~ti~r~l~~ 42 (321)
T 1bia_A 3 DNTVPLKLIALLA---NGEFHSGEQLGETLGMSRAAINKHIQT 42 (321)
T ss_dssp CCHHHHHHHHHHT---TSSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cchHHHHHHHHHH---cCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3567777776542 235679999999999999999987764
No 483
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=29.82 E-value=57 Score=34.05 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 577 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 577 L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
+++.+..||.+-. . .+.|..|||+.+|+|+++|+++
T Consensus 18 ~d~~~~~IL~~L~-~---~~~s~~eLA~~lglS~stv~~~ 53 (192)
T 1uly_A 18 LEDTRRKILKLLR-N---KEMTISQLSEILGKTPQTIYHH 53 (192)
T ss_dssp HSHHHHHHHHHHT-T---CCBCHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHH-c---CCCCHHHHHHHHCcCHHHHHHH
Confidence 5788888887654 2 2579999999999999999843
No 484
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=29.81 E-value=39 Score=32.89 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.5
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAKALRKLRH 1416 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~ 1416 (1432)
|..++|+.||||+.+||. |++.|..
T Consensus 30 se~~La~~~gvSr~tVr~----Al~~L~~ 54 (129)
T 2ek5_A 30 STNELAAFHRINPATARN----GLTLLVE 54 (129)
T ss_dssp CHHHHHHHTTCCHHHHHH----HHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 899999999999999985 6666764
No 485
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=29.81 E-value=34 Score=33.04 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=20.2
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhh
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAKALRKLR 1415 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~rAl~kLr 1415 (1432)
|..++|+.||||+.+||. |++.|.
T Consensus 39 s~~~La~~~~vSr~tvr~----Al~~L~ 62 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSR----AYQELE 62 (125)
T ss_dssp CHHHHHHHHTCCHHHHHH----HHHHHH
T ss_pred CHHHHHHHHCcCHHHHHH----HHHHHH
Confidence 699999999999999985 555554
No 486
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=29.66 E-value=1e+02 Score=29.74 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=35.6
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 566 MRSVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 566 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
+...+...+. .|++.+..||..-+..+ +.|..+||+.+|+++++|...
T Consensus 16 ~~~~~~~~~~~~~lt~~q~~iL~~l~~~~---~~t~~eLa~~l~~~~~tvs~~ 65 (145)
T 3g3z_A 16 ICNVFDKWIGQQDLNYNLFAVLYTLATEG---SRTQKHIGEKWSLPKQTVSGV 65 (145)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC---SBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCHHHHHHH
Confidence 3444555554 49999999887665433 369999999999999998843
No 487
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=29.63 E-value=49 Score=30.04 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.8
Q ss_pred CHHHHHHHhCCCHHH----HHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRER----IRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~----Vrq~~~r 1409 (1432)
|.+++|+.+|||+++ |+++++-
T Consensus 16 sq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 16 SQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 999999999999999 8877754
No 488
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=29.60 E-value=1.1e+02 Score=30.24 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=34.9
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhhccc--CCCCcHHHHHhhcccchhHHHHHH
Q psy15215 566 MRSVVKDILN--SLTPRESKVLRMRFGIEM--SSDHTLEEVGKQFDVTRERIRQIE 617 (1432)
Q Consensus 566 ~~~~l~~~L~--~L~~rer~Vl~lr~~~~~--~~~~t~~EIa~~l~is~~~v~~~~ 617 (1432)
+...+...|. .|++.|-.||..-+..+. +.+.|..|||+.+++++++|....
T Consensus 18 ~~~~~~~~l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v 73 (148)
T 4fx0_A 18 LGQAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNL 73 (148)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHH
Confidence 3445566665 499999998876554331 235699999999999999988543
No 489
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=29.58 E-value=40 Score=31.02 Aligned_cols=22 Identities=9% Similarity=0.229 Sum_probs=20.4
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1388 TLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1388 t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
|..++|+.+|||+++|+++++.
T Consensus 33 tq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 33 NTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 9999999999999999998864
No 490
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=29.29 E-value=55 Score=31.41 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=28.9
Q ss_pred cCCHHHHH-HHHHHhhcccCCCCcHHHHHhhcccchhHHHHHHHH
Q psy15215 576 SLTPRESK-VLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 619 (1432)
Q Consensus 576 ~L~~rer~-Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~~~r 619 (1432)
.+|+.++. |+.+.+-.|. .+..+||+.|||++++|+.+...
T Consensus 7 ~~t~e~K~~iv~~~~~~g~---~~~~~~A~~~gvs~stl~~~~~~ 48 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEENPD---LRKGEIARRFNIPPSTLSTILKN 48 (131)
T ss_dssp CCCHHHHHHHHHHHHHCTT---SCHHHHHHHHTCCHHHHHHHHHT
T ss_pred eCCHHHHHHHHHHHHHCCC---CcHHHHHHHhCCCHHHHHHHHhc
Confidence 47777774 5555543343 24459999999999999987654
No 491
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=29.23 E-value=76 Score=27.84 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=41.3
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchhh
Q psy15215 1366 SLTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRY 1420 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~~ 1420 (1432)
.+++.+..+|...|..... ....-.+||..+|+|...|+.+...-..|.|+..+.
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 13 SFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 3678888888888865431 122467899999999999999998888887775443
No 492
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=29.21 E-value=44 Score=32.44 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=24.8
Q ss_pred HHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15215 1376 RMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK 1409 (1432)
Q Consensus 1376 ~lr~~~~~~~~~t~~EIa~~l~vs~~~Vrq~~~r 1409 (1432)
.+|--.|+ |++|+|+.+|+|+++|+++++-
T Consensus 10 ~~R~~~gl----tq~elA~~~gis~~~is~iE~g 39 (130)
T 3fym_A 10 GRRERLGM----TLTELEQRTGIKREMLVHIENN 39 (130)
T ss_dssp HHHHHTTC----CHHHHHHHHCCCHHHHHHHHTT
T ss_pred HHHHHcCC----CHHHHHHHHCcCHHHHHHHHCC
Confidence 34444455 9999999999999999999875
No 493
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=29.19 E-value=28 Score=29.17 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHHHhcccCC----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Q psy15215 1366 SLTPRESKVLRMRFGIEMS----SDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 1416 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~----~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~ 1416 (1432)
.+|+.+..+|.-.|..... ....-.+||..+|+|...|+.+......+.|+
T Consensus 9 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 9 HMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp SSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred cCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 3677778888877732111 12246789999999999999999888777665
No 494
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=29.13 E-value=71 Score=31.66 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=34.2
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhhcccCCCCcHHHHHhhcccchhHHHHH
Q psy15215 568 SVVKDILN--SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616 (1432)
Q Consensus 568 ~~l~~~L~--~L~~rer~Vl~lr~~~~~~~~~t~~EIa~~l~is~~~v~~~ 616 (1432)
..+...+. .|++.+..||..-+.. .+.|..+||+.+|+++++|...
T Consensus 39 ~~~~~~l~~~~lt~~~~~iL~~l~~~---~~~t~~ela~~l~is~~tvs~~ 86 (162)
T 3cjn_A 39 ANLRKEMTALGLSTAKMRALAILSAK---DGLPIGTLGIFAVVEQSTLSRA 86 (162)
T ss_dssp HHHHTTHHHHTCCHHHHHHHHHHHHS---CSEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHC---CCCCHHHHHHHHCCChhHHHHH
Confidence 33444443 3999999998776532 2569999999999999999843
No 495
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=29.01 E-value=47 Score=28.25 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.9
Q ss_pred CcHHHHHhhcccchhHHHHHHH
Q psy15215 597 HTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 597 ~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
.|+.++|+.+|+|+++|.+++.
T Consensus 24 lsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 24 VSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHC
Confidence 3999999999999999998774
No 496
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=29.00 E-value=34 Score=30.02 Aligned_cols=53 Identities=9% Similarity=0.285 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCchh
Q psy15215 1367 LTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 1419 (1432)
Q Consensus 1367 L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~~ 1419 (1432)
+++.+..+|...|-.... .....++||..+|+|...|+.+....+.+.|+...
T Consensus 24 ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 24 ITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 455555566555543321 11235789999999999999999999988887543
No 497
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=28.93 E-value=68 Score=27.16 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=40.1
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCch
Q psy15215 1366 SLTPRESKVLRMRFGIEMS-SDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 1418 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~~~~-~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~ 1418 (1432)
.+++.+..+|...|..... ....-.+||..+|+|...|..+...-..+.|+..
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 8 TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 3678888888888865431 1224678999999999999999988877777644
No 498
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=28.88 E-value=49 Score=29.09 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.0
Q ss_pred CcHHHHHhhcccchhHHHHHHH
Q psy15215 597 HTLEEVGKQFDVTRERIRQIEA 618 (1432)
Q Consensus 597 ~t~~EIa~~l~is~~~v~~~~~ 618 (1432)
.|+.++|+.+|+|+.+|.+++.
T Consensus 26 lsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 26 WTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHc
Confidence 3999999999999999998775
No 499
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=28.72 E-value=65 Score=27.76 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHhcc-cC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhhCch
Q psy15215 1366 SLTPRESKVLRMRFGI-EM-SSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 1418 (1432)
Q Consensus 1366 ~L~~rer~Vl~lr~~~-~~-~~~~t~~EIa~~l~vs~~~Vrq~~~rAl~kLr~~~ 1418 (1432)
.+++.+..+|...|.. .. .......+||..+|+|...|+.+...-..+.|+..
T Consensus 8 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 8 GPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp SCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 3678888888888852 32 22234678999999999999999988777777643
No 500
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=28.71 E-value=23 Score=38.12 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=32.3
Q ss_pred ccCCHHHHHHHHHHhcccCCCCCC--HHHHHHHhCCCHHHHHHHHHHH
Q psy15215 1365 NSLTPRESKVLRMRFGIEMSSDHT--LEEVGKQFDVTRERIRQIEAKA 1410 (1432)
Q Consensus 1365 ~~L~~rer~Vl~lr~~~~~~~~~t--~~EIa~~l~vs~~~Vrq~~~rA 1410 (1432)
+.||+.+..+|..-|.... .+.| ..+||+.+|+|+++|.+.+.+-
T Consensus 2 ~~lt~~~e~yL~~i~~l~~-~~~~~~~~~la~~l~vs~~tvs~~l~~L 48 (226)
T 2qq9_A 2 KDLVATTEMYLRTIYELEE-EGVTPLRARIAERLEQSGPTVSQTVARM 48 (226)
T ss_dssp -CHHHHHHHHHHHHHHHHH-HTCCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhh-cCCCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 4578888888877665432 1234 4999999999999999866543
Done!