Your job contains 1 sequence.
>psy15215
MKFINKKTKIKNKKTKETLLKNAFSFDIKSNSREEIENLRKKFKILIKLGKERGYLTFSE
INDFLPEDIIDHEIIESIIKTFRYMDISVSEHVLDTETLMLSNITSDDDVEEATEAALST
VDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILI
AADKISKNEIKIDEIVDGLIDKNFSSNNRVIKGNKNNNEEKILIESSSADLSTEQLEKLK
YESLIKFSNISFHFDKMRKAFEKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLR
NQINQVTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNI
PSIKELQQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKY
TDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV
HMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDD
EDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLE
EVGKQFDVTRERIRQIEAKALRKLRPLAHDWLEQRTHQNEKIIACSSDSSNHNEHVTNNN
FPPGFNIFHKLLRILQEYLESFLISFFLRNHGISGFLLTTPDPVHETPLFHKSNELYGLF
EAKNAIGKSGYVLITEGYMDVIGLSQFGFFANSSYTCFDGDQAGRRAARRALEVCLLYAT
DDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKNAFSFDIKSNSREEIENLRKKFKILIKLG
KERGYLTFSEINDFLPEDIIDHEIIESIIKTFRYMDISVSEHVLDTETLMLSNITSDDDV
EEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGLKDMIHAISS
CPTTIMEILIAADKISKNEIKIDEIVDGLIDKNFSSNNRVIKGNKNNNEEKILIESSSAD
LSTEQLEKLKYESLIKFSNISFHFDKMRKAFEKEGYNSESYIKAHNNISNEMLGIRFTAK
SIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQH
DYNLILCRNIPSIKELQQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANL
RLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIA
DQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEP
VSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFG
IEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIFLEGKKN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15215
(1432 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q9KUK1 - symbol:VC_0517 "RNA polymerase sigma f... 1151 1.6e-155 3
TIGR_CMR|VC_0517 - symbol:VC_0517 "RNA polymerase sigma f... 1151 1.6e-155 3
TIGR_CMR|SO_1284 - symbol:SO_1284 "RNA polymerase sigma-7... 1143 3.6e-150 2
TIGR_CMR|CPS_4334 - symbol:CPS_4334 "RNA polymerase sigma... 1434 8.1e-147 1
UNIPROTKB|P00579 - symbol:rpoD species:83333 "Escherichia... 1422 1.5e-145 1
TIGR_CMR|CBU_1596 - symbol:CBU_1596 "RNA polymerase sigma... 1332 5.2e-136 1
TIGR_CMR|SPO_1750 - symbol:SPO_1750 "RNA polymerase sigma... 1019 2.1e-124 2
TIGR_CMR|GSU_3089 - symbol:GSU_3089 "RNA polymerase sigma... 945 2.9e-123 3
TIGR_CMR|ECH_0760 - symbol:ECH_0760 "RNA polymerase sigma... 870 9.6e-108 3
TIGR_CMR|APH_0576 - symbol:APH_0576 "RNA polymerase sigma... 882 5.1e-105 2
TIGR_CMR|DET_0551 - symbol:DET_0551 "RNA polymerase sigma... 851 7.1e-94 3
TIGR_CMR|BA_4515 - symbol:BA_4515 "RNA polymerase sigma-4... 833 6.6e-92 2
TIGR_CMR|CJE_1081 - symbol:CJE_1081 "RNA polymerase sigma... 902 6.3e-90 1
TIGR_CMR|CHY_0455 - symbol:CHY_0455 "RNA polymerase sigma... 853 1.6e-84 1
TIGR_CMR|NSE_0312 - symbol:NSE_0312 "RNA polymerase sigma... 731 1.5e-83 2
UNIPROTKB|P0A602 - symbol:rpoD "RNA polymerase sigma fact... 716 1.8e-77 2
UNIPROTKB|Q59563 - symbol:mysB "RNA polymerase sigma fact... 635 5.6e-68 2
TIGR_CMR|GSU_1525 - symbol:GSU_1525 "RNA polymerase sigma... 551 8.7e-58 2
TIGR_CMR|CBU_1669 - symbol:CBU_1669 "RNA polymerase sigma... 536 2.2e-56 2
TIGR_CMR|VC_0534 - symbol:VC_0534 "RNA polymerase sigma f... 530 4.2e-56 3
UNIPROTKB|P13445 - symbol:rpoS "RNA polymerase, sigma S (... 505 9.4e-51 2
TIGR_CMR|SO_3432 - symbol:SO_3432 "RNA polymerase sigma f... 510 6.4e-50 2
TIGR_CMR|CPS_1079 - symbol:CPS_1079 "RNA polymerase sigma... 502 2.0e-48 2
TAIR|locus:2025650 - symbol:SIG2 "AT1G08540" species:3702... 463 4.4e-47 4
TAIR|locus:2057996 - symbol:SIGF "AT2G36990" species:3702... 469 1.4e-44 2
TAIR|locus:2173249 - symbol:SIG4 "AT5G13730" species:3702... 407 1.3e-36 1
UNIPROTKB|Q84LK8 - symbol:SIG6 "Sig6" species:39947 "Oryz... 406 1.1e-35 2
UNIPROTKB|O48655 - symbol:rsigA "Plastid RNA polymerase s... 375 3.1e-33 2
TAIR|locus:2010871 - symbol:SIGA "AT1G64860" species:3702... 365 7.6e-32 2
TAIR|locus:2167413 - symbol:SIGE "AT5G24120" species:3702... 348 1.5e-28 2
TAIR|locus:2084420 - symbol:SIGC "AT3G53920" species:3702... 349 2.5e-28 1
UNIPROTKB|Q84JN3 - symbol:SIG5 "Os05g0586600 protein" spe... 341 5.2e-28 1
TIGR_CMR|SPO_1409 - symbol:SPO_1409 "RNA polymerase sigma... 247 3.1e-21 2
TIGR_CMR|CHY_2055 - symbol:CHY_2055 "RNA polymerase sigma... 262 3.7e-21 1
TIGR_CMR|GSU_0655 - symbol:GSU_0655 "RNA polymerase sigma... 262 3.7e-21 1
TIGR_CMR|BA_4042 - symbol:BA_4042 "RNA polymerase sigma-G... 254 2.7e-20 1
UNIPROTKB|P50511 - symbol:rpoH "RNA polymerase sigma-32 f... 228 7.4e-20 2
TIGR_CMR|VC_0150 - symbol:VC_0150 "RNA polymerase sigma-3... 228 7.4e-20 2
TIGR_CMR|APH_0759 - symbol:APH_0759 "RNA polymerase sigma... 244 3.1e-19 1
UNIPROTKB|O32728 - symbol:O32728 "RNA polymerase sigma fa... 232 5.0e-19 2
TIGR_CMR|SO_4583 - symbol:SO_4583 "RNA polymerase sigma-3... 215 1.1e-18 2
TIGR_CMR|NSE_0341 - symbol:NSE_0341 "RNA polymerase sigma... 236 2.2e-18 1
TIGR_CMR|BA_4294 - symbol:BA_4294 "RNA polymerase sigma-F... 234 3.6e-18 1
UNIPROTKB|P0AGB3 - symbol:rpoH species:83333 "Escherichia... 231 7.5e-18 1
TIGR_CMR|CHY_1959 - symbol:CHY_1959 "RNA polymerase sigma... 224 4.2e-17 1
TIGR_CMR|SPO_0406 - symbol:SPO_0406 "RNA polymerase sigma... 221 8.7e-17 1
TIGR_CMR|ECH_0655 - symbol:ECH_0655 "RNA polymerase sigma... 213 1.7e-16 2
TIGR_CMR|CBU_1909 - symbol:CBU_1909 "RNA polymerase sigma... 218 1.8e-16 1
UNIPROTKB|Q7D5S2 - symbol:sigF "Alternative RNA polymeras... 197 3.1e-14 1
TIGR_CMR|CPS_0161 - symbol:CPS_0161 "RNA polymerase sigma... 200 3.3e-14 2
UNIPROTKB|O83707 - symbol:TP_0709 "RNA polymerase sigma f... 195 5.1e-14 1
TIGR_CMR|CHY_0617 - symbol:CHY_0617 "RNA polymerase sigma... 125 3.0e-12 2
UNIPROTKB|P0ABS5 - symbol:dnaG species:83333 "Escherichia... 124 1.7e-11 2
TIGR_CMR|CHY_1013 - symbol:CHY_1013 "RNA polymerase sigma... 178 4.0e-11 1
TIGR_CMR|SO_1286 - symbol:SO_1286 "DNA primase" species:2... 138 1.2e-10 2
TIGR_CMR|CPS_1519 - symbol:CPS_1519 "motility sigma facto... 166 8.2e-10 1
UNIPROTKB|Q9K5J6 - symbol:sigB "RNA polymerase sigma-B fa... 166 1.9e-09 1
TIGR_CMR|BA_0992 - symbol:BA_0992 "RNA polymerase sigma-B... 166 1.9e-09 1
UNIPROTKB|P0AEM6 - symbol:fliA "RNA polymerase, sigma 28 ... 162 3.2e-09 1
UNIPROTKB|Q9KQD4 - symbol:VC_2066 "RNA polymerase sigma f... 160 7.4e-09 1
TIGR_CMR|VC_2066 - symbol:VC_2066 "RNA polymerase sigma f... 160 7.4e-09 1
TIGR_CMR|CHY_2056 - symbol:CHY_2056 "RNA polymerase sigma... 154 3.3e-08 1
TIGR_CMR|CBU_1595 - symbol:CBU_1595 "DNA primase" species... 114 1.5e-07 3
UNIPROTKB|Q48GG2 - symbol:fliA "RNA polymerase sigma fact... 148 2.0e-07 1
UNIPROTKB|Q884V7 - symbol:fliA "Motility sigma factor Fli... 148 2.3e-07 1
TIGR_CMR|CPS_4335 - symbol:CPS_4335 "DNA primase" species... 116 3.1e-07 2
TIGR_CMR|BA_4566 - symbol:BA_4566 "RNA polymerase sigma-2... 142 5.1e-07 2
TIGR_CMR|GSU_3053 - symbol:GSU_3053 "RNA polymerase sigma... 145 5.7e-07 1
TIGR_CMR|SO_3210 - symbol:SO_3210 "RNA polymerase sigma-2... 140 1.7e-06 1
TIGR_CMR|BA_4043 - symbol:BA_4043 "RNA polymerase sigma-2... 131 2.0e-05 1
UNIPROTKB|E1BJ15 - symbol:CEP290 "Centrosomal protein of ... 81 3.1e-05 7
MGI|MGI:2384917 - symbol:Cep290 "centrosomal protein 290"... 73 4.4e-05 6
UNIPROTKB|F1SPZ0 - symbol:CEP290 "Uncharacterized protein... 83 5.8e-05 7
TIGR_CMR|BA_4516 - symbol:BA_4516 "DNA primase" species:1... 100 8.4e-05 2
TIGR_CMR|CJE_0058 - symbol:CJE_0058 "RNA polymerase sigma... 122 0.00019 1
UNIPROTKB|F1Q2D1 - symbol:CEP290 "Uncharacterized protein... 86 0.00035 5
UNIPROTKB|E2R0F5 - symbol:CEP290 "Uncharacterized protein... 86 0.00040 5
TIGR_CMR|BA_4115 - symbol:BA_4115 "prophage LambdaBa02, R... 122 0.00040 1
>UNIPROTKB|Q9KUK1 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 1151 (410.2 bits), Expect = 1.6e-155, Sum P(3) = 1.6e-155
Identities = 231/393 (58%), Positives = 291/393 (74%)
Query: 1036 KFSNISFHFDKMRKAFEKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQ 1095
KF+ + F ++ A + G +S +A + + + R T K + L +TLR +++
Sbjct: 232 KFNELRGKFQNLQLAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDR 291
Query: 1096 VTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKE 1155
V E+ +++ VV MP+ FI +F NE N W+D Y + I+
Sbjct: 292 VRTQERLVMKAVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRR 351
Query: 1156 LQQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGL 1215
QKL ++ + L + ++DI+R+M GE KAR+AK+EM EANLRLVISIAKKYT+RGL
Sbjct: 352 SIQKLQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGL 411
Query: 1216 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 1275
QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET
Sbjct: 412 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 471
Query: 1276 INKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHL 1335
INK++RISRQ+LQE G EP P +A +M+MPE+KIRK++KIAKEP+SME+P+GDDEDSHL
Sbjct: 472 INKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHL 531
Query: 1336 GDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQ 1395
GDFIED + P D+A S+++ +D+L LTPRE+KVLRMRFGI+M++DHTLEEVGKQ
Sbjct: 532 GDFIEDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQ 591
Query: 1396 FDVTRERIRQIEAKALRKLRHPSRYYKLKIFLE 1428
FDVTRERIRQIEAKALRKLRHPSR L+ FL+
Sbjct: 592 FDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 624
Score = 1117 (398.3 bits), Expect = 4.1e-149, Sum P(2) = 4.1e-149
Identities = 224/380 (58%), Positives = 282/380 (74%)
Query: 246 KFSNISFHFDKMRKAFEKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQ 305
KF+ + F ++ A + G +S +A + + + R T K + L +TLR +++
Sbjct: 232 KFNELRGKFQNLQLAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDR 291
Query: 306 VTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKE 365
V E+ +++ VV MP+ FI +F NE N W+D Y + I+
Sbjct: 292 VRTQERLVMKAVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRR 351
Query: 366 LQQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGL 425
QKL ++ + L + ++DI+R+M GE KAR+AK+EM EANLRLVISIAKKYT+RGL
Sbjct: 352 SIQKLQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGL 411
Query: 426 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 485
QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET
Sbjct: 412 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 471
Query: 486 INKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHL 545
INK++RISRQ+LQE G EP P +A +M+MPE+KIRK++KIAKEP+SME+P+GDDEDSHL
Sbjct: 472 INKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHL 531
Query: 546 GDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQ 605
GDFIED + P D+A S+++ +D+L LTPRE+KVLRMRFGI+M++DHTLEEVGKQ
Sbjct: 532 GDFIEDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQ 591
Query: 606 FDVTRERIRQIEAKALRKLR 625
FDVTRERIRQIEAKALRKLR
Sbjct: 592 FDVTRERIRQIEAKALRKLR 611
Score = 360 (131.8 bits), Expect = 1.6e-155, Sum P(3) = 1.6e-155
Identities = 74/169 (43%), Positives = 108/169 (63%)
Query: 37 ENLRKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDT 96
+N + + K L+ GKE+GYLT++E+ND LP + M I V E D
Sbjct: 3 QNPQSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDA 62
Query: 97 ETLMLSNITS--DDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIA 154
+ L LS+ T+ D+D EA AALS+V+S+ GRT DP++MYMREMG+VELLTR+GEI+IA
Sbjct: 63 DDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 122
Query: 155 KRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKN 203
KRIE+G+ + AI+ P TI IL D++ E+++ +++ G +D N
Sbjct: 123 KRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPN 171
Score = 360 (131.8 bits), Expect = 1.0e-152, Sum P(2) = 1.0e-152
Identities = 74/169 (43%), Positives = 108/169 (63%)
Query: 827 ENLRKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDT 886
+N + + K L+ GKE+GYLT++E+ND LP + M I V E D
Sbjct: 3 QNPQSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDA 62
Query: 887 ETLMLSNITS--DDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIA 944
+ L LS+ T+ D+D EA AALS+V+S+ GRT DP++MYMREMG+VELLTR+GEI+IA
Sbjct: 63 DDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 122
Query: 945 KRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKN 993
KRIE+G+ + AI+ P TI IL D++ E+++ +++ G +D N
Sbjct: 123 KRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPN 171
Score = 42 (19.8 bits), Expect = 1.6e-155, Sum P(3) = 1.6e-155
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 594 SSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLAHDWLEQRTHQ 638
SSD EEVG ++ RE+ ++ K + L+ LA + + +HQ
Sbjct: 215 SSDSE-EEVGIDPELAREKFNELRGK-FQNLQ-LAVNEFGRDSHQ 256
Score = 40 (19.1 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 1384 SSDHTLEEVGKQFDVTRERIRQIEAK 1409
SSD EEVG ++ RE+ ++ K
Sbjct: 215 SSDSE-EEVGIDPELAREKFNELRGK 239
>TIGR_CMR|VC_0517 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor RpoD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 1151 (410.2 bits), Expect = 1.6e-155, Sum P(3) = 1.6e-155
Identities = 231/393 (58%), Positives = 291/393 (74%)
Query: 1036 KFSNISFHFDKMRKAFEKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQ 1095
KF+ + F ++ A + G +S +A + + + R T K + L +TLR +++
Sbjct: 232 KFNELRGKFQNLQLAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDR 291
Query: 1096 VTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKE 1155
V E+ +++ VV MP+ FI +F NE N W+D Y + I+
Sbjct: 292 VRTQERLVMKAVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRR 351
Query: 1156 LQQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGL 1215
QKL ++ + L + ++DI+R+M GE KAR+AK+EM EANLRLVISIAKKYT+RGL
Sbjct: 352 SIQKLQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGL 411
Query: 1216 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 1275
QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET
Sbjct: 412 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 471
Query: 1276 INKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHL 1335
INK++RISRQ+LQE G EP P +A +M+MPE+KIRK++KIAKEP+SME+P+GDDEDSHL
Sbjct: 472 INKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHL 531
Query: 1336 GDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQ 1395
GDFIED + P D+A S+++ +D+L LTPRE+KVLRMRFGI+M++DHTLEEVGKQ
Sbjct: 532 GDFIEDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQ 591
Query: 1396 FDVTRERIRQIEAKALRKLRHPSRYYKLKIFLE 1428
FDVTRERIRQIEAKALRKLRHPSR L+ FL+
Sbjct: 592 FDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 624
Score = 1117 (398.3 bits), Expect = 4.1e-149, Sum P(2) = 4.1e-149
Identities = 224/380 (58%), Positives = 282/380 (74%)
Query: 246 KFSNISFHFDKMRKAFEKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQ 305
KF+ + F ++ A + G +S +A + + + R T K + L +TLR +++
Sbjct: 232 KFNELRGKFQNLQLAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDR 291
Query: 306 VTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKE 365
V E+ +++ VV MP+ FI +F NE N W+D Y + I+
Sbjct: 292 VRTQERLVMKAVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRR 351
Query: 366 LQQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGL 425
QKL ++ + L + ++DI+R+M GE KAR+AK+EM EANLRLVISIAKKYT+RGL
Sbjct: 352 SIQKLQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGL 411
Query: 426 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 485
QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET
Sbjct: 412 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 471
Query: 486 INKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHL 545
INK++RISRQ+LQE G EP P +A +M+MPE+KIRK++KIAKEP+SME+P+GDDEDSHL
Sbjct: 472 INKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHL 531
Query: 546 GDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQ 605
GDFIED + P D+A S+++ +D+L LTPRE+KVLRMRFGI+M++DHTLEEVGKQ
Sbjct: 532 GDFIEDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQ 591
Query: 606 FDVTRERIRQIEAKALRKLR 625
FDVTRERIRQIEAKALRKLR
Sbjct: 592 FDVTRERIRQIEAKALRKLR 611
Score = 360 (131.8 bits), Expect = 1.6e-155, Sum P(3) = 1.6e-155
Identities = 74/169 (43%), Positives = 108/169 (63%)
Query: 37 ENLRKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDT 96
+N + + K L+ GKE+GYLT++E+ND LP + M I V E D
Sbjct: 3 QNPQSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDA 62
Query: 97 ETLMLSNITS--DDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIA 154
+ L LS+ T+ D+D EA AALS+V+S+ GRT DP++MYMREMG+VELLTR+GEI+IA
Sbjct: 63 DDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 122
Query: 155 KRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKN 203
KRIE+G+ + AI+ P TI IL D++ E+++ +++ G +D N
Sbjct: 123 KRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPN 171
Score = 360 (131.8 bits), Expect = 1.0e-152, Sum P(2) = 1.0e-152
Identities = 74/169 (43%), Positives = 108/169 (63%)
Query: 827 ENLRKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDT 886
+N + + K L+ GKE+GYLT++E+ND LP + M I V E D
Sbjct: 3 QNPQSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDA 62
Query: 887 ETLMLSNITS--DDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIA 944
+ L LS+ T+ D+D EA AALS+V+S+ GRT DP++MYMREMG+VELLTR+GEI+IA
Sbjct: 63 DDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 122
Query: 945 KRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKN 993
KRIE+G+ + AI+ P TI IL D++ E+++ +++ G +D N
Sbjct: 123 KRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPN 171
Score = 42 (19.8 bits), Expect = 1.6e-155, Sum P(3) = 1.6e-155
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 594 SSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLAHDWLEQRTHQ 638
SSD EEVG ++ RE+ ++ K + L+ LA + + +HQ
Sbjct: 215 SSDSE-EEVGIDPELAREKFNELRGK-FQNLQ-LAVNEFGRDSHQ 256
Score = 40 (19.1 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 1384 SSDHTLEEVGKQFDVTRERIRQIEAK 1409
SSD EEVG ++ RE+ ++ K
Sbjct: 215 SSDSE-EEVGIDPELAREKFNELRGK 239
>TIGR_CMR|SO_1284 [details] [associations]
symbol:SO_1284 "RNA polymerase sigma-70 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 HOGENOM:HOG000270272
KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393 RefSeq:NP_716906.1
ProteinModelPortal:Q8EHE1 SMR:Q8EHE1 GeneID:1169104
KEGG:son:SO_1284 PATRIC:23522218 ProtClustDB:CLSK906181
Uniprot:Q8EHE1
Length = 616
Score = 1143 (407.4 bits), Expect = 3.6e-150, Sum P(2) = 3.6e-150
Identities = 229/397 (57%), Positives = 292/397 (73%)
Query: 1032 ESLIKFSNISFHFDKMRKAFEKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRN 1091
E+ +FS + ++ K + +G I+A I R K ++L ++R+
Sbjct: 219 EARERFSQLRTAYESALKIIDAKGREHPESIQALFEIGEIFKEFRLVPKQFDRLVKSMRS 278
Query: 1092 QINQVTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNIP 1151
+++V E+ ++++ V + MP+ +F+K F NE NL+W + E Y L
Sbjct: 279 MMDRVRVQERLLMKLCVEQAKMPKKNFVKFFTGNETNLDWFEAEKTSNKPYAEGLRMVEE 338
Query: 1152 SIKELQQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYT 1211
++ + KL ++ + L + ++DINR+M GE KAR+AK+EM EANLRLVISIAKKYT
Sbjct: 339 DVQRCRSKLAAIEEETGLVIAAIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT 398
Query: 1212 DRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 1271
+RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH
Sbjct: 399 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 458
Query: 1272 MIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDE 1331
MIETINK++RISRQ+LQE G EP P +A +M MPE+KIRK++KIAKEP+SME+P+GDDE
Sbjct: 459 MIETINKLNRISRQMLQEMGREPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDE 518
Query: 1332 DSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEE 1391
DSHLGDFIED + P D+A + S++S ++L LT RE+KVLRMRFGI+M++DHTLEE
Sbjct: 519 DSHLGDFIEDTTLELPLDSATSESLKSATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEE 578
Query: 1392 VGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIFLE 1428
VGKQFDVTRERIRQIEAKALRKLRHPSR LK FL+
Sbjct: 579 VGKQFDVTRERIRQIEAKALRKLRHPSRSEILKSFLD 615
Score = 1107 (394.7 bits), Expect = 2.3e-146, Sum P(2) = 2.3e-146
Identities = 221/384 (57%), Positives = 283/384 (73%)
Query: 242 ESLIKFSNISFHFDKMRKAFEKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRN 301
E+ +FS + ++ K + +G I+A I R K ++L ++R+
Sbjct: 219 EARERFSQLRTAYESALKIIDAKGREHPESIQALFEIGEIFKEFRLVPKQFDRLVKSMRS 278
Query: 302 QINQVTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNIP 361
+++V E+ ++++ V + MP+ +F+K F NE NL+W + E Y L
Sbjct: 279 MMDRVRVQERLLMKLCVEQAKMPKKNFVKFFTGNETNLDWFEAEKTSNKPYAEGLRMVEE 338
Query: 362 SIKELQQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYT 421
++ + KL ++ + L + ++DINR+M GE KAR+AK+EM EANLRLVISIAKKYT
Sbjct: 339 DVQRCRSKLAAIEEETGLVIAAIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT 398
Query: 422 DRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 481
+RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH
Sbjct: 399 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 458
Query: 482 MIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDE 541
MIETINK++RISRQ+LQE G EP P +A +M MPE+KIRK++KIAKEP+SME+P+GDDE
Sbjct: 459 MIETINKLNRISRQMLQEMGREPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDE 518
Query: 542 DSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEE 601
DSHLGDFIED + P D+A + S++S ++L LT RE+KVLRMRFGI+M++DHTLEE
Sbjct: 519 DSHLGDFIEDTTLELPLDSATSESLKSATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEE 578
Query: 602 VGKQFDVTRERIRQIEAKALRKLR 625
VGKQFDVTRERIRQIEAKALRKLR
Sbjct: 579 VGKQFDVTRERIRQIEAKALRKLR 602
Score = 344 (126.2 bits), Expect = 3.6e-150, Sum P(2) = 3.6e-150
Identities = 67/162 (41%), Positives = 102/162 (62%)
Query: 40 RKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDTETL 99
+ + K+L+ GKE+GYLT++E+ND LP + M I V E D + +
Sbjct: 6 QSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVFEEAPDADDM 65
Query: 100 MLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEE 159
M+S +D+D E AAL+TV+S+ GRT DP++MYMREMG+VELLTR+GEI IAKRIEE
Sbjct: 66 MMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEE 125
Query: 160 GLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLID 201
G+ + +++ P I IL D+ +E+++ +I+ G ++
Sbjct: 126 GINTVQSSVAEYPQAIAMILEQYDQYEADELRLSDIISGFVN 167
Score = 344 (126.2 bits), Expect = 3.6e-150, Sum P(2) = 3.6e-150
Identities = 67/162 (41%), Positives = 102/162 (62%)
Query: 830 RKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDTETL 889
+ + K+L+ GKE+GYLT++E+ND LP + M I V E D + +
Sbjct: 6 QSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVFEEAPDADDM 65
Query: 890 MLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEE 949
M+S +D+D E AAL+TV+S+ GRT DP++MYMREMG+VELLTR+GEI IAKRIEE
Sbjct: 66 MMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEE 125
Query: 950 GLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLID 991
G+ + +++ P I IL D+ +E+++ +I+ G ++
Sbjct: 126 GINTVQSSVAEYPQAIAMILEQYDQYEADELRLSDIISGFVN 167
>TIGR_CMR|CPS_4334 [details] [associations]
symbol:CPS_4334 "RNA polymerase sigma-70 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
RefSeq:YP_270983.1 ProteinModelPortal:Q47W39 SMR:Q47W39
STRING:Q47W39 GeneID:3522880 KEGG:cps:CPS_4334 PATRIC:21471513
BioCyc:CPSY167879:GI48-4343-MONOMER Uniprot:Q47W39
Length = 616
Score = 1434 (509.9 bits), Expect = 8.1e-147, P = 8.1e-147
Identities = 301/612 (49%), Positives = 402/612 (65%)
Query: 830 RKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDTETL 889
+ + K LI GKE+GYLTF+++ND LP M I V E+ D +TL
Sbjct: 6 QSRLKDLITKGKEQGYLTFAQVNDHLPQDIIDSDQVEDIVSMINDMGIQVFENAPDQDTL 65
Query: 890 MLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEE 949
M++ +D+D EA AL+TV+S+ GRT DP++MYMREMG+VELLTR GEI IAKRIEE
Sbjct: 66 MMAEANTDEDAAEAAAQALATVESEIGRTTDPVRMYMREMGTVELLTRKGEIVIAKRIEE 125
Query: 950 GLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNFSSXXXXXXXXXXXXX 1009
G+K++ ++S P I +L D E+++ +I+ G +D +
Sbjct: 126 GIKEVQRSVSEYPPAINYLLDMWDNFEAEEVRLTDIIIGFLDPDAEDDDVAAAATHVGSE 185
Query: 1010 XXXXXXXXX--------ADLSTEQLEKLKYESLI---KFSNISFHFDKMRKAFEKEGYNS 1058
A+ E+ E + + KF+ + + K +K+G
Sbjct: 186 LSKEDLANEDSEKKEGDAEEEDEEEEDTGPDPELAREKFTLLREAHENATKVVKKKGRGH 245
Query: 1059 ESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHF 1118
+ +A + ++ R K +KL +R ++++ E+ I++ V+ GMP+ F
Sbjct: 246 KDAQEAIDAVAEVFKEFRLIPKLFDKLVKNMRGMMDRLRVQERLIMKHCVS-AGMPKTTF 304
Query: 1119 IKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKELQQKLINLQTDIVLPLNDLRDIN 1178
IK+FP NE + W + E + Y+ L ++ KL ++ + L ++ ++DIN
Sbjct: 305 IKIFPGNETSKEWFEAEKAAGNPYSTKLGDIEHDVERCIYKLNQIEEETHLNIHGIKDIN 364
Query: 1179 RKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYR 1238
R+M GE KAR+AK+EM EANLRLVISIAKKYT+RGLQFLDLIQEGNIGLMKAVDKFEYR
Sbjct: 365 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 424
Query: 1239 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSV 1298
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK++R+SRQ+LQE G EP P
Sbjct: 425 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEE 484
Query: 1299 IAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRS 1358
+A +M MPE+KIRK++KIAKEP+SME+P+GDDEDSHLGDFIED + P D+A + +++
Sbjct: 485 LAERMVMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGSGELPVDSATSENLKG 544
Query: 1359 VVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 1418
++L LT RE+KVLRMRFGI+M++DHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
Sbjct: 545 ATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 604
Query: 1419 RYYKLKIFLEGK 1430
R +LK FL+G+
Sbjct: 605 RSEQLKSFLDGE 616
Score = 1387 (493.3 bits), Expect = 7.8e-142, P = 7.8e-142
Identities = 292/597 (48%), Positives = 390/597 (65%)
Query: 40 RKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDTETL 99
+ + K LI GKE+GYLTF+++ND LP M I V E+ D +TL
Sbjct: 6 QSRLKDLITKGKEQGYLTFAQVNDHLPQDIIDSDQVEDIVSMINDMGIQVFENAPDQDTL 65
Query: 100 MLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEE 159
M++ +D+D EA AL+TV+S+ GRT DP++MYMREMG+VELLTR GEI IAKRIEE
Sbjct: 66 MMAEANTDEDAAEAAAQALATVESEIGRTTDPVRMYMREMGTVELLTRKGEIVIAKRIEE 125
Query: 160 GLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNFSSXXXXXXXXXXXXX 219
G+K++ ++S P I +L D E+++ +I+ G +D +
Sbjct: 126 GIKEVQRSVSEYPPAINYLLDMWDNFEAEEVRLTDIIIGFLDPDAEDDDVAAAATHVGSE 185
Query: 220 XXXXXXXXX--------ADLSTEQLEKLKYESLI---KFSNISFHFDKMRKAFEKEGYNS 268
A+ E+ E + + KF+ + + K +K+G
Sbjct: 186 LSKEDLANEDSEKKEGDAEEEDEEEEDTGPDPELAREKFTLLREAHENATKVVKKKGRGH 245
Query: 269 ESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHF 328
+ +A + ++ R K +KL +R ++++ E+ I++ V+ GMP+ F
Sbjct: 246 KDAQEAIDAVAEVFKEFRLIPKLFDKLVKNMRGMMDRLRVQERLIMKHCVS-AGMPKTTF 304
Query: 329 IKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKELQQKLINLQTDIVLPLNDLRDIN 388
IK+FP NE + W + E + Y+ L ++ KL ++ + L ++ ++DIN
Sbjct: 305 IKIFPGNETSKEWFEAEKAAGNPYSTKLGDIEHDVERCIYKLNQIEEETHLNIHGIKDIN 364
Query: 389 RKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYR 448
R+M GE KAR+AK+EM EANLRLVISIAKKYT+RGLQFLDLIQEGNIGLMKAVDKFEYR
Sbjct: 365 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 424
Query: 449 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSV 508
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK++R+SRQ+LQE G EP P
Sbjct: 425 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEE 484
Query: 509 IAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRS 568
+A +M MPE+KIRK++KIAKEP+SME+P+GDDEDSHLGDFIED + P D+A + +++
Sbjct: 485 LAERMVMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGSGELPVDSATSENLKG 544
Query: 569 VVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
++L LT RE+KVLRMRFGI+M++DHTLEEVGKQFDVTRERIRQIEAKALRKLR
Sbjct: 545 ATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 601
>UNIPROTKB|P00579 [details] [associations]
symbol:rpoD species:83333 "Escherichia coli K-12"
[GO:0016987 "sigma factor activity" evidence=IEA;IDA] [GO:0009408
"response to heat" evidence=IEP] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR007631
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 EMBL:U28379 PDB:1TLH PDBsum:1TLH GO:GO:0016987
PDB:3IYD PDBsum:3IYD SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:J01687 PDB:3T72 PDBsum:3T72 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
PIR:A65095 RefSeq:NP_417539.1 RefSeq:YP_491259.1 PDB:1SIG PDB:2P7V
PDBsum:1SIG PDBsum:2P7V ProteinModelPortal:P00579 SMR:P00579
DIP:DIP-10773N IntAct:P00579 MINT:MINT-1220595 PaxDb:P00579
PRIDE:P00579 EnsemblBacteria:EBESCT00000001124
EnsemblBacteria:EBESCT00000001125 EnsemblBacteria:EBESCT00000001126
EnsemblBacteria:EBESCT00000001127 EnsemblBacteria:EBESCT00000001128
EnsemblBacteria:EBESCT00000001129 EnsemblBacteria:EBESCT00000001130
EnsemblBacteria:EBESCT00000017672 GeneID:12932074 GeneID:947567
KEGG:ecj:Y75_p2993 KEGG:eco:b3067 PATRIC:32121550 EchoBASE:EB0889
EcoGene:EG10896 ProtClustDB:PRK05658 BioCyc:EcoCyc:RPOD-MONOMER
BioCyc:ECOL316407:JW3039-MONOMER BioCyc:MetaCyc:RPOD-MONOMER
BindingDB:P00579 ChEMBL:CHEMBL5329 EvolutionaryTrace:P00579
Genevestigator:P00579 Uniprot:P00579
Length = 613
Score = 1422 (505.6 bits), Expect = 1.5e-145, P = 1.5e-145
Identities = 295/610 (48%), Positives = 398/610 (65%)
Query: 827 ENLRKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDT 886
+N + + K+L+ GKE+GYLT++E+ND LP + M I V E D
Sbjct: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDA 62
Query: 887 ETLMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKR 946
+ LML+ T+D+D EA LS+V+S+ GRT DP++MYMREMG+VELLTR+GEI+IAKR
Sbjct: 63 DDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 122
Query: 947 IEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNFSSXXXXXXXXXX 1006
IE+G+ + +++ P I +L D++ E ++ +++ G +D N
Sbjct: 123 IEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVG 182
Query: 1007 XXXXXXXXXXXXA-------DLSTEQLEKLKYE-SLIKFSNISFHFDKMRKAFEKEGYNS 1058
D S + + E + KF+ + + R + +G +
Sbjct: 183 SELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSH 242
Query: 1059 ESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHF 1118
+ + +S R K + L +++R +++V E+ I+++ V +C MP+ +F
Sbjct: 243 ATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNF 302
Query: 1119 IKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKELQQKLINLQTDIVLPLNDLRDIN 1178
I +F NE + W + + ++ L + QKL ++ + L + ++DIN
Sbjct: 303 ITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDIN 362
Query: 1179 RKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYR 1238
R+M GE KAR+AK+EM EANLRLVISIAKKYT+RGLQFLDLIQEGNIGLMKAVDKFEYR
Sbjct: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422
Query: 1239 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSV 1298
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK++RISRQ+LQE G EP P
Sbjct: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482
Query: 1299 IAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRS 1358
+A +M MPE+KIRK++KIAKEP+SME+P+GDDEDSHLGDFIED + P D+A S+R+
Sbjct: 483 LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA 542
Query: 1359 VVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 1418
D+L LT RE+KVLRMRFGI+M++D+TLEEVGKQFDVTRERIRQIEAKALRKLRHPS
Sbjct: 543 ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602
Query: 1419 RYYKLKIFLE 1428
R L+ FL+
Sbjct: 603 RSEVLRSFLD 612
Score = 1388 (493.7 bits), Expect = 6.1e-142, P = 6.1e-142
Identities = 288/597 (48%), Positives = 389/597 (65%)
Query: 37 ENLRKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDT 96
+N + + K+L+ GKE+GYLT++E+ND LP + M I V E D
Sbjct: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDA 62
Query: 97 ETLMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKR 156
+ LML+ T+D+D EA LS+V+S+ GRT DP++MYMREMG+VELLTR+GEI+IAKR
Sbjct: 63 DDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 122
Query: 157 IEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNFSSXXXXXXXXXX 216
IE+G+ + +++ P I +L D++ E ++ +++ G +D N
Sbjct: 123 IEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVG 182
Query: 217 XXXXXXXXXXXXA-------DLSTEQLEKLKYE-SLIKFSNISFHFDKMRKAFEKEGYNS 268
D S + + E + KF+ + + R + +G +
Sbjct: 183 SELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSH 242
Query: 269 ESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHF 328
+ + +S R K + L +++R +++V E+ I+++ V +C MP+ +F
Sbjct: 243 ATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNF 302
Query: 329 IKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKELQQKLINLQTDIVLPLNDLRDIN 388
I +F NE + W + + ++ L + QKL ++ + L + ++DIN
Sbjct: 303 ITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDIN 362
Query: 389 RKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYR 448
R+M GE KAR+AK+EM EANLRLVISIAKKYT+RGLQFLDLIQEGNIGLMKAVDKFEYR
Sbjct: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422
Query: 449 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSV 508
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK++RISRQ+LQE G EP P
Sbjct: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482
Query: 509 IAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRS 568
+A +M MPE+KIRK++KIAKEP+SME+P+GDDEDSHLGDFIED + P D+A S+R+
Sbjct: 483 LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA 542
Query: 569 VVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
D+L LT RE+KVLRMRFGI+M++D+TLEEVGKQFDVTRERIRQIEAKALRKLR
Sbjct: 543 ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599
>TIGR_CMR|CBU_1596 [details] [associations]
symbol:CBU_1596 "RNA polymerase sigma factor RpoD"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 EMBL:AF273254
RefSeq:NP_820579.1 HSSP:P00579 ProteinModelPortal:Q83BB6 SMR:Q83BB6
PRIDE:Q83BB6 GeneID:1209506 KEGG:cbu:CBU_1596 PATRIC:17931957
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH ProtClustDB:CLSK914891
BioCyc:CBUR227377:GJ7S-1575-MONOMER TIGRFAMs:TIGR02393
Uniprot:Q83BB6
Length = 698
Score = 1332 (473.9 bits), Expect = 5.2e-136, P = 5.2e-136
Identities = 285/605 (47%), Positives = 381/605 (62%)
Query: 827 ENLRKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDT 886
E+ R F L++ K +GYL ++ + LP M I V E D
Sbjct: 94 ESQRLGFGALLEEAKNKGYLVHEDLINLLPNDYADPSQMEGIIGRLTEMGIKVFEIPPDA 153
Query: 887 ETLMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKR 946
++L+L T DD +E E + ++ RT DP++MYMREMGSVELLTR+GEI IAKR
Sbjct: 154 DSLLLEEDTQSDD-DEINEDVAEVLATET-RTTDPVRMYMREMGSVELLTREGEIVIAKR 211
Query: 947 IEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNFSSXXXXXXXXXX 1006
IEEG++ ++ A+ P I + + D I E ++ +++ G D+ S
Sbjct: 212 IEEGIRQVMGAVVQYPELIEKFIKEYDTIVATEGRLSDLLIGFFDEE-ESTASPVAPEAR 270
Query: 1007 XXXXXXXXXXXXADLSTEQLEKLKYESLIK---FSNISFHFDKMRKAFEKEGYNSESYIK 1063
+ +++ + + LI + + + + A ++ G + + +K
Sbjct: 271 DKEAETSDEDDGGEGGSDEFGESGPDPLITQQHMEELKKLYGRYQNAIKRYGKKAPATLK 330
Query: 1064 AHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHFIKVFP 1123
++ + + K +L LR + E+ I+ V K PR FI FP
Sbjct: 331 HQKALAELFSTFKLSIKQFNRLTGQLRRMLRAARAQERLIMSYCVVKAKTPRKKFIASFP 390
Query: 1124 ENEINLNWVDNETKIQHDYNLILCRNIPSIKELQQKLINLQTDIVLPLNDLRDINRKMIA 1183
NE N+ W++ + L + I Q+ L L+ L + ++++INR++
Sbjct: 391 HNETNMKWLEQYKNENKEQAKRLEKYSKEIYRAQRNLAQLEEQNNLNIQEIKEINRRVAI 450
Query: 1184 GEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 1243
GE K+R+AK+EM EANLRLVISIAKKYT+RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF
Sbjct: 451 GEAKSRRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 510
Query: 1244 STYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKM 1303
STYATWWIRQAITRSIADQARTIRIPVHMIETINK++RISRQILQETG E P + +M
Sbjct: 511 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGIEATPEELGRRM 570
Query: 1304 EMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDI 1363
+MPEEK+RK++KIAKEP+SME+P+G+DEDS+LGDFIED NM +P D A +A + ++I
Sbjct: 571 DMPEEKVRKVLKIAKEPISMETPIGEDEDSNLGDFIEDINMESPVDFATSAGLMEATREI 630
Query: 1364 LNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKL 1423
L++LTPRE+KVLRMRFGI+M++DHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR KL
Sbjct: 631 LSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAEKL 690
Query: 1424 KIFLE 1428
F+E
Sbjct: 691 HSFIE 695
Score = 1293 (460.2 bits), Expect = 7.1e-132, P = 7.1e-132
Identities = 277/592 (46%), Positives = 372/592 (62%)
Query: 37 ENLRKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDT 96
E+ R F L++ K +GYL ++ + LP M I V E D
Sbjct: 94 ESQRLGFGALLEEAKNKGYLVHEDLINLLPNDYADPSQMEGIIGRLTEMGIKVFEIPPDA 153
Query: 97 ETLMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKR 156
++L+L T DD +E E + ++ RT DP++MYMREMGSVELLTR+GEI IAKR
Sbjct: 154 DSLLLEEDTQSDD-DEINEDVAEVLATET-RTTDPVRMYMREMGSVELLTREGEIVIAKR 211
Query: 157 IEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNFSSXXXXXXXXXX 216
IEEG++ ++ A+ P I + + D I E ++ +++ G D+ S
Sbjct: 212 IEEGIRQVMGAVVQYPELIEKFIKEYDTIVATEGRLSDLLIGFFDEE-ESTASPVAPEAR 270
Query: 217 XXXXXXXXXXXXADLSTEQLEKLKYESLIK---FSNISFHFDKMRKAFEKEGYNSESYIK 273
+ +++ + + LI + + + + A ++ G + + +K
Sbjct: 271 DKEAETSDEDDGGEGGSDEFGESGPDPLITQQHMEELKKLYGRYQNAIKRYGKKAPATLK 330
Query: 274 AHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHFIKVFP 333
++ + + K +L LR + E+ I+ V K PR FI FP
Sbjct: 331 HQKALAELFSTFKLSIKQFNRLTGQLRRMLRAARAQERLIMSYCVVKAKTPRKKFIASFP 390
Query: 334 ENEINLNWVDNETKIQHDYNLILCRNIPSIKELQQKLINLQTDIVLPLNDLRDINRKMIA 393
NE N+ W++ + L + I Q+ L L+ L + ++++INR++
Sbjct: 391 HNETNMKWLEQYKNENKEQAKRLEKYSKEIYRAQRNLAQLEEQNNLNIQEIKEINRRVAI 450
Query: 394 GEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 453
GE K+R+AK+EM EANLRLVISIAKKYT+RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF
Sbjct: 451 GEAKSRRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 510
Query: 454 STYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKM 513
STYATWWIRQAITRSIADQARTIRIPVHMIETINK++RISRQILQETG E P + +M
Sbjct: 511 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGIEATPEELGRRM 570
Query: 514 EMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDI 573
+MPEEK+RK++KIAKEP+SME+P+G+DEDS+LGDFIED NM +P D A +A + ++I
Sbjct: 571 DMPEEKVRKVLKIAKEPISMETPIGEDEDSNLGDFIEDINMESPVDFATSAGLMEATREI 630
Query: 574 LNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
L++LTPRE+KVLRMRFGI+M++DHTLEEVGKQFDVTRERIRQIEAKALRKLR
Sbjct: 631 LSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 682
>TIGR_CMR|SPO_1750 [details] [associations]
symbol:SPO_1750 "RNA polymerase sigma-70 factor RpoD"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007127
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR007631 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
Pfam:PF04546 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_166988.1 ProteinModelPortal:Q5LSL7
SMR:Q5LSL7 GeneID:3193502 KEGG:sil:SPO1750 PATRIC:23376823
OMA:YQGSELD Uniprot:Q5LSL7
Length = 660
Score = 1019 (363.8 bits), Expect = 2.1e-124, Sum P(2) = 2.1e-124
Identities = 217/424 (51%), Positives = 291/424 (68%)
Query: 1019 ADLSTEQLEK-LKYESLIKFSNISFHF---DKMRKAFEKEGYNSESYIKAHNNISNEMLG 1074
A++S +E LK + LI IS + +M+ + N + AH+ + + L
Sbjct: 237 ANMSLAAMEAALKDKVLITLERISSDYAQLSEMQDSRISATLNEDGSFSAHDEATYQSLR 296
Query: 1075 ---------IRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHFIKVFPEN 1125
+ IE L D L +V I+ ++++ ++ + R FI +
Sbjct: 297 SEIVLLVNELHLHNNRIEALIDQLYGINKRVMSIDSSMVKLA-DQARINRREFIDAYRGR 355
Query: 1126 EINLNWV-DNETKIQHDYNLILCRNIPSIKELQQKLINLQTDIVLPLNDLRDINRKMIAG 1184
E++ NW+ + K + + + R+ ++EL+ + + + L +++ R I +++ G
Sbjct: 356 ELDPNWLAEMAEKPGRGWQMFIERSSDKVEELRADMAQVGQYVGLDISEFRRIVQQVQKG 415
Query: 1185 EMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 1244
E +AR+AK+EM EANLRLVISIAKKYT+RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
Sbjct: 416 EKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 475
Query: 1245 TYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKME 1304
TYATWWIRQAITRSIADQARTIRIPVHMIETINK+ R RQ+L E G EP P +A K++
Sbjct: 476 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQ 535
Query: 1305 MPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDIL 1364
MP EK+RK+MKIAKEP+S+E+P+GD+EDS LGDFIED+N + P D+A+ +++ +L
Sbjct: 536 MPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVL 595
Query: 1365 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLK 1424
SLTPRE +VLRMRFGI M++DHTLEEVG+QF VTRERIRQIEAKALRKL+HPSR KL+
Sbjct: 596 ASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLR 655
Query: 1425 IFLE 1428
FL+
Sbjct: 656 SFLD 659
Score = 978 (349.3 bits), Expect = 4.6e-120, Sum P(2) = 4.6e-120
Identities = 209/411 (50%), Positives = 281/411 (68%)
Query: 229 ADLSTEQLEK-LKYESLIKFSNISFHF---DKMRKAFEKEGYNSESYIKAHNNISNEMLG 284
A++S +E LK + LI IS + +M+ + N + AH+ + + L
Sbjct: 237 ANMSLAAMEAALKDKVLITLERISSDYAQLSEMQDSRISATLNEDGSFSAHDEATYQSLR 296
Query: 285 ---------IRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHFIKVFPEN 335
+ IE L D L +V I+ ++++ ++ + R FI +
Sbjct: 297 SEIVLLVNELHLHNNRIEALIDQLYGINKRVMSIDSSMVKLA-DQARINRREFIDAYRGR 355
Query: 336 EINLNWV-DNETKIQHDYNLILCRNIPSIKELQQKLINLQTDIVLPLNDLRDINRKMIAG 394
E++ NW+ + K + + + R+ ++EL+ + + + L +++ R I +++ G
Sbjct: 356 ELDPNWLAEMAEKPGRGWQMFIERSSDKVEELRADMAQVGQYVGLDISEFRRIVQQVQKG 415
Query: 395 EMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 454
E +AR+AK+EM EANLRLVISIAKKYT+RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
Sbjct: 416 EKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 475
Query: 455 TYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKME 514
TYATWWIRQAITRSIADQARTIRIPVHMIETINK+ R RQ+L E G EP P +A K++
Sbjct: 476 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQ 535
Query: 515 MPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDIL 574
MP EK+RK+MKIAKEP+S+E+P+GD+EDS LGDFIED+N + P D+A+ +++ +L
Sbjct: 536 MPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVL 595
Query: 575 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
SLTPRE +VLRMRFGI M++DHTLEEVG+QF VTRERIRQIEAKALRKL+
Sbjct: 596 ASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 646
Score = 224 (83.9 bits), Expect = 2.1e-124, Sum P(2) = 2.1e-124
Identities = 57/175 (32%), Positives = 88/175 (50%)
Query: 27 DIKSNSREEIENL---RKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFR 83
D K +E+ +L + + K +I +E+GY+T+ ++N LP
Sbjct: 9 DQKPEDQEDEVSLDMSQAQVKKMIAEAREKGYITYDQLNQVLPPDQVSSEQIEDVMSMLS 68
Query: 84 YMDISVSEHVLDTETLMLSNITSDDDVEEATEAALSTVDSD-FGRTKDPIKMYMREMGSV 142
M I++ E + E T E E AL+ ++ RT DP++MY+REMGSV
Sbjct: 69 EMGINIIEDE-EAEEEEQKGSTDLITTESNREVALAGAQAEKLDRTDDPVRMYLREMGSV 127
Query: 143 ELLTRDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVD 197
ELL+R+GEI IAKRIE G MI + P T I I D++ +I + +++D
Sbjct: 128 ELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWHDELLSEDILLRDVID 182
Score = 224 (83.9 bits), Expect = 2.1e-124, Sum P(2) = 2.1e-124
Identities = 57/175 (32%), Positives = 88/175 (50%)
Query: 817 DIKSNSREEIENL---RKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFR 873
D K +E+ +L + + K +I +E+GY+T+ ++N LP
Sbjct: 9 DQKPEDQEDEVSLDMSQAQVKKMIAEAREKGYITYDQLNQVLPPDQVSSEQIEDVMSMLS 68
Query: 874 YMDISVSEHVLDTETLMLSNITSDDDVEEATEAALSTVDSD-FGRTKDPIKMYMREMGSV 932
M I++ E + E T E E AL+ ++ RT DP++MY+REMGSV
Sbjct: 69 EMGINIIEDE-EAEEEEQKGSTDLITTESNREVALAGAQAEKLDRTDDPVRMYLREMGSV 127
Query: 933 ELLTRDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVD 987
ELL+R+GEI IAKRIE G MI + P T I I D++ +I + +++D
Sbjct: 128 ELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWHDELLSEDILLRDVID 182
Score = 51 (23.0 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 19/101 (18%), Positives = 46/101 (45%)
Query: 894 ITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGS-VELLTRDGEIEIAKRIEEGLK 952
I ++DD +E +A +S + KD + + + + S L+ + I+ + E
Sbjct: 225 IVTEDDEDEDDQANMSLAAME-AALKDKVLITLERISSDYAQLSEMQDSRISATLNEDGS 283
Query: 953 DMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKN 993
H ++ + EI++ +++ + +I+ ++D L N
Sbjct: 284 FSAHDEATYQSLRSEIVLLVNELHLHNNRIEALIDQLYGIN 324
>TIGR_CMR|GSU_3089 [details] [associations]
symbol:GSU_3089 "RNA polymerase sigma factor RpoD"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:NP_954130.1 ProteinModelPortal:Q748B8 SMR:Q748B8
GeneID:2686774 KEGG:gsu:GSU3089 PATRIC:22029033 OMA:REMGSVS
ProtClustDB:CLSK924660 BioCyc:GSUL243231:GH27-3063-MONOMER
Uniprot:Q748B8
Length = 577
Score = 945 (337.7 bits), Expect = 2.9e-123, Sum P(3) = 2.9e-123
Identities = 181/276 (65%), Positives = 226/276 (81%)
Query: 1153 IKELQQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTD 1212
++ ++KL ++ + +L D R + GE K++ AK E+ EANLRLV+SIAKKYT+
Sbjct: 302 VRSAEKKLKKVEEESGFKARELSDALRAIDRGEAKSKLAKSELVEANLRLVVSIAKKYTN 361
Query: 1213 RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM 1272
RGLQFLDLIQEGNIGLMKAVDKFEY+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHM
Sbjct: 362 RGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHM 421
Query: 1273 IETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDED 1332
IETINK+ R SRQ++QE G EP P IA +M +P +K+RK++KIAKEP+S+E+P+G++ED
Sbjct: 422 IETINKLIRTSRQLVQEIGREPSPEEIAERMNLPLDKVRKVLKIAKEPISLETPIGEEED 481
Query: 1333 SHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEV 1392
SHLGDFIED+ +++P +A + A++ +L +LTPRE KVLRMRFGI SDHTLEEV
Sbjct: 482 SHLGDFIEDKGVVSPLEAVIKANLSEQTARVLATLTPREEKVLRMRFGIGEKSDHTLEEV 541
Query: 1393 GKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIFLE 1428
G+ F+VTRERIRQIEAKALRKLRHPSR KL+ F+E
Sbjct: 542 GQDFEVTRERIRQIEAKALRKLRHPSRAKKLRSFVE 577
Score = 904 (323.3 bits), Expect = 5.3e-116, Sum P(2) = 5.3e-116
Identities = 173/263 (65%), Positives = 216/263 (82%)
Query: 363 IKELQQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTD 422
++ ++KL ++ + +L D R + GE K++ AK E+ EANLRLV+SIAKKYT+
Sbjct: 302 VRSAEKKLKKVEEESGFKARELSDALRAIDRGEAKSKLAKSELVEANLRLVVSIAKKYTN 361
Query: 423 RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM 482
RGLQFLDLIQEGNIGLMKAVDKFEY+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHM
Sbjct: 362 RGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHM 421
Query: 483 IETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDED 542
IETINK+ R SRQ++QE G EP P IA +M +P +K+RK++KIAKEP+S+E+P+G++ED
Sbjct: 422 IETINKLIRTSRQLVQEIGREPSPEEIAERMNLPLDKVRKVLKIAKEPISLETPIGEEED 481
Query: 543 SHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEV 602
SHLGDFIED+ +++P +A + A++ +L +LTPRE KVLRMRFGI SDHTLEEV
Sbjct: 482 SHLGDFIEDKGVVSPLEAVIKANLSEQTARVLATLTPREEKVLRMRFGIGEKSDHTLEEV 541
Query: 603 GKQFDVTRERIRQIEAKALRKLR 625
G+ F+VTRERIRQIEAKALRKLR
Sbjct: 542 GQDFEVTRERIRQIEAKALRKLR 564
Score = 269 (99.8 bits), Expect = 2.9e-123, Sum P(3) = 2.9e-123
Identities = 60/155 (38%), Positives = 88/155 (56%)
Query: 834 KILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDTETLMLSN 893
K LI LGKE+G+LT+ E+ND LP F MDI + + + + +
Sbjct: 10 KQLIDLGKEKGFLTYDEVNDLLPPDISSEQIDDVMSM-FGEMDIDIVD---SAQKVKIPK 65
Query: 894 ITSDDDVEEATEAALSTVDSD---FGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEG 950
+ D + EE E + + GRT DP++MY+REMGSV LLTR+GE+EIAKRIEEG
Sbjct: 66 MKLDLEEEEEIEGEQEDFEYEPGALGRTSDPVRMYLREMGSVSLLTREGEVEIAKRIEEG 125
Query: 951 LKDMIHAISSCPTTIMEILIAADKISKNEIKIDEI 985
+D+ I + P T+ EI+ +K+ + ++ EI
Sbjct: 126 ERDIAGVILNTPITVKEIIALGEKLLRGQVSAAEI 160
Score = 269 (99.8 bits), Expect = 5.8e-121, Sum P(2) = 5.8e-121
Identities = 60/155 (38%), Positives = 88/155 (56%)
Query: 44 KILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDTETLMLSN 103
K LI LGKE+G+LT+ E+ND LP F MDI + + + + +
Sbjct: 10 KQLIDLGKEKGFLTYDEVNDLLPPDISSEQIDDVMSM-FGEMDIDIVD---SAQKVKIPK 65
Query: 104 ITSDDDVEEATEAALSTVDSD---FGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEG 160
+ D + EE E + + GRT DP++MY+REMGSV LLTR+GE+EIAKRIEEG
Sbjct: 66 MKLDLEEEEEIEGEQEDFEYEPGALGRTSDPVRMYLREMGSVSLLTREGEVEIAKRIEEG 125
Query: 161 LKDMIHAISSCPTTIMEILIAADKISKNEIKIDEI 195
+D+ I + P T+ EI+ +K+ + ++ EI
Sbjct: 126 ERDIAGVILNTPITVKEIIALGEKLLRGQVSAAEI 160
Score = 38 (18.4 bits), Expect = 2.9e-123, Sum P(3) = 2.9e-123
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 416 IAKKYTDRGLQFLDLIQE 433
+AKK TD Q +DL +E
Sbjct: 1 MAKKSTDEVKQLIDLGKE 18
>TIGR_CMR|ECH_0760 [details] [associations]
symbol:ECH_0760 "RNA polymerase sigma factor RpoD"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_507558.1 ProteinModelPortal:Q2GG75 SMR:Q2GG75
STRING:Q2GG75 GeneID:3927201 KEGG:ech:ECH_0760 PATRIC:20576954
OMA:KISFICE ProtClustDB:CLSK749621
BioCyc:ECHA205920:GJNR-763-MONOMER Uniprot:Q2GG75
Length = 622
Score = 870 (311.3 bits), Expect = 9.6e-108, Sum P(3) = 9.6e-108
Identities = 186/371 (50%), Positives = 256/371 (69%)
Query: 1059 ESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHF 1118
+ Y H++I + I+ + ++ + + + + E +I+ + G+ R F
Sbjct: 261 KQYNDLHDSIWEMIYQIKLSNSAVLSITQQIYSLSKSIAAEEAKIISLA-ESYGIQRKDF 319
Query: 1119 IKVFPENEINLNWVDNETKIQHDYNLILCR--NIPSIKELQQKLINLQTDIVLPLNDLRD 1176
+ + N + L T Q D N++L NI S+ + KL++ + + L + +
Sbjct: 320 LDAYNTNSV-LQ--KKGTSPQWD-NMLLNEESNIVSMYS-KIKLLSGENN----LTEFKA 370
Query: 1177 INRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFE 1236
+ K+ E A +AK+EM +ANLRLV+SIAKKY++RGLQFLDL+QEGNIGLMKAVDKF+
Sbjct: 371 LVTKIQKHERAANQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFD 430
Query: 1237 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDP 1296
Y+RGYKFSTYATWW+RQAITR+IADQARTIRIPVHMIET+NKI+R RQ+L E G EP
Sbjct: 431 YKRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEMGREPTL 490
Query: 1297 SVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASM 1356
++ ++ + +KIRK+MKI K+PVS+ESP+GDD+ S GD IED+ + P DAA+ A +
Sbjct: 491 EELSARLNINVDKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRAVKPEDAAVLADL 550
Query: 1357 RSVVKDILNSLTPRESKVLRMRFGI-EMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
R + +L++LTP+E ++LRMRFGI + DHTLEEVGK F+VTRERIRQIEAKALRKLR
Sbjct: 551 REITTKVLSTLTPKEERILRMRFGIGKGGKDHTLEEVGKLFNVTRERIRQIEAKALRKLR 610
Query: 1416 HPSRYYKLKIF 1426
HPSR KL+ F
Sbjct: 611 HPSRARKLRGF 621
Score = 837 (299.7 bits), Expect = 7.6e-102, Sum P(2) = 7.6e-102
Identities = 179/360 (49%), Positives = 248/360 (68%)
Query: 269 ESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHF 328
+ Y H++I + I+ + ++ + + + + E +I+ + G+ R F
Sbjct: 261 KQYNDLHDSIWEMIYQIKLSNSAVLSITQQIYSLSKSIAAEEAKIISLA-ESYGIQRKDF 319
Query: 329 IKVFPENEINLNWVDNETKIQHDYNLILCR--NIPSIKELQQKLINLQTDIVLPLNDLRD 386
+ + N + L T Q D N++L NI S+ + KL++ + + L + +
Sbjct: 320 LDAYNTNSV-LQ--KKGTSPQWD-NMLLNEESNIVSMYS-KIKLLSGENN----LTEFKA 370
Query: 387 INRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFE 446
+ K+ E A +AK+EM +ANLRLV+SIAKKY++RGLQFLDL+QEGNIGLMKAVDKF+
Sbjct: 371 LVTKIQKHERAANQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFD 430
Query: 447 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDP 506
Y+RGYKFSTYATWW+RQAITR+IADQARTIRIPVHMIET+NKI+R RQ+L E G EP
Sbjct: 431 YKRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEMGREPTL 490
Query: 507 SVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASM 566
++ ++ + +KIRK+MKI K+PVS+ESP+GDD+ S GD IED+ + P DAA+ A +
Sbjct: 491 EELSARLNINVDKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRAVKPEDAAVLADL 550
Query: 567 RSVVKDILNSLTPRESKVLRMRFGI-EMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
R + +L++LTP+E ++LRMRFGI + DHTLEEVGK F+VTRERIRQIEAKALRKLR
Sbjct: 551 REITTKVLSTLTPKEERILRMRFGIGKGGKDHTLEEVGKLFNVTRERIRQIEAKALRKLR 610
Score = 207 (77.9 bits), Expect = 9.6e-108, Sum P(3) = 9.6e-108
Identities = 47/172 (27%), Positives = 91/172 (52%)
Query: 34 EEIENLRKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHV 93
++++ ++ + L+ G ++G++TF++IND + I+V E
Sbjct: 2 KDLQTDKELLRTLVSKGLKQGFVTFNDINDVFSDYVLSSDNIDETISMLQDSGINVLEQS 61
Query: 94 LDTET-LMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIE 152
+ E ++ D+++E + S DFG+T DPI+MY+ EM SVELL+R+GEIE
Sbjct: 62 DEDEANSIIEENRIKDEMDEDDVSDTSIKSWDFGQTDDPIRMYLCEMSSVELLSREGEIE 121
Query: 153 IAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNF 204
IAK+I+ +M+ ++ P + + D + +I + +++D +D N+
Sbjct: 122 IAKKIKSEKVNMLRSLVESPIVLRTFMSWRDDLVNEQIMLRDLID--LDANY 171
Score = 207 (77.9 bits), Expect = 1.5e-105, Sum P(2) = 1.5e-105
Identities = 47/172 (27%), Positives = 91/172 (52%)
Query: 824 EEIENLRKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHV 883
++++ ++ + L+ G ++G++TF++IND + I+V E
Sbjct: 2 KDLQTDKELLRTLVSKGLKQGFVTFNDINDVFSDYVLSSDNIDETISMLQDSGINVLEQS 61
Query: 884 LDTET-LMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIE 942
+ E ++ D+++E + S DFG+T DPI+MY+ EM SVELL+R+GEIE
Sbjct: 62 DEDEANSIIEENRIKDEMDEDDVSDTSIKSWDFGQTDDPIRMYLCEMSSVELLSREGEIE 121
Query: 943 IAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNF 994
IAK+I+ +M+ ++ P + + D + +I + +++D +D N+
Sbjct: 122 IAKKIKSEKVNMLRSLVESPIVLRTFMSWRDDLVNEQIMLRDLID--LDANY 171
Score = 48 (22.0 bits), Expect = 4.7e-12, Sum P(3) = 4.7e-12
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 941 IEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEI-KIDEIV 986
IE +I L+ M+H + PT +E L A I+ ++I K+ +IV
Sbjct: 467 IETVNKINRTLRQMLHEMGREPT--LEELSARLNINVDKIRKVMKIV 511
Score = 42 (19.8 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 29/105 (27%), Positives = 52/105 (49%)
Query: 1330 DEDSHLG---DFIE--DENMLAPSDA-ALNASMRSVVKDILNSLTPRESKVLRMRFGIEM 1383
D+ S LG D ++ DE+ P D N S+ + + ++ N+L P KV+ + +
Sbjct: 183 DDASVLGYDKDLMDEPDEDPDIPEDEDEENISINASILEMENALLP---KVVSILDSVIA 239
Query: 1384 SSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRY---YKLKI 1425
S++ LE + KQ+ + +I Q K L H S + Y++K+
Sbjct: 240 SAEKILE-LKKQY---QGKINQDIEKQYNDL-HDSIWEMIYQIKL 279
Score = 41 (19.5 bits), Expect = 9.6e-108, Sum P(3) = 9.6e-108
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 540 DEDSHLG---DFIE--DENMLAPSDA-ALNASMRSVVKDILNSLTPRESKVLRMRFGIEM 593
D+ S LG D ++ DE+ P D N S+ + + ++ N+L P KV+ + +
Sbjct: 183 DDASVLGYDKDLMDEPDEDPDIPEDEDEENISINASILEMENALLP---KVVSILDSVIA 239
Query: 594 SSDHTLEEVGKQF 606
S++ LE + KQ+
Sbjct: 240 SAEKILE-LKKQY 251
Score = 40 (19.1 bits), Expect = 1.2e-107, Sum P(3) = 1.2e-107
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 876 DISVSEHVLDTETLMLSNITSD-DDVEEATEAALSTVDSDFGRTKDPI-KMY 925
+IS++ +L+ E +L + S D V + E L G+ I K Y
Sbjct: 212 NISINASILEMENALLPKVVSILDSVIASAEKILELKKQYQGKINQDIEKQY 263
Score = 40 (19.1 bits), Expect = 6.2e-88, Sum P(2) = 6.2e-88
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 86 DISVSEHVLDTETLMLSNITSD-DDVEEATEAALSTVDSDFGRTKDPI-KMY 135
+IS++ +L+ E +L + S D V + E L G+ I K Y
Sbjct: 212 NISINASILEMENALLPKVVSILDSVIASAEKILELKKQYQGKINQDIEKQY 263
>TIGR_CMR|APH_0576 [details] [associations]
symbol:APH_0576 "RNA polymerase sigma factor RpoD"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393 OMA:KISFICE
ProtClustDB:CLSK749621 RefSeq:YP_505167.1 ProteinModelPortal:Q2GKD4
SMR:Q2GKD4 STRING:Q2GKD4 GeneID:3930981 KEGG:aph:APH_0576
PATRIC:20949818 BioCyc:APHA212042:GHPM-600-MONOMER Uniprot:Q2GKD4
Length = 627
Score = 882 (315.5 bits), Expect = 5.1e-105, Sum P(2) = 5.1e-105
Identities = 183/383 (47%), Positives = 259/383 (67%)
Query: 1046 KMRKAFEKEG-YNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQIL 1104
+M+K G Y+ +Y + H++I + ++ + ++ + + + E ++
Sbjct: 252 EMKKKKRDGGEYDENAYNELHDSIWEMVSQMKLSDSAVASVTQQIYALSKSIAAEESSLI 311
Query: 1105 EIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKELQQKLINLQ 1164
+ G+ R F+ + N N + + K ++ +L + ++ E+Q + + L
Sbjct: 312 SLA-ESYGVDRKSFLDAY-----NNNTIAEQAKTSFEWQNLLDKEGDTLLEMQNR-VKLL 364
Query: 1165 TDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEG 1224
+ P + + K+ E A +AK+EM +ANLRLV+SIAKKY++RGLQFLDL+QEG
Sbjct: 365 SGEDCP-GSFKALVAKIQKHERTANRAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEG 423
Query: 1225 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISR 1284
NIGLMKAVDKF+Y+RGYKFSTYATWW+RQAITR+IADQARTIRIPVHMIET+NKI+R R
Sbjct: 424 NIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLR 483
Query: 1285 QILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENM 1344
Q+L E G EP ++ ++ + EKIRK+MKI K+PVS+ESP+GDD+ S GD IED+
Sbjct: 484 QMLHEIGREPTLEELSARLNINVEKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRA 543
Query: 1345 LAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSS-DHTLEEVGKQFDVTRERI 1403
+ P +AA+ A +R + +L++LTP+E ++LRMRFGI S DHTLEEVG+ F+VTRERI
Sbjct: 544 VKPENAAVLADLREITTKVLSTLTPKEERILRMRFGIGKSGKDHTLEEVGRLFNVTRERI 603
Query: 1404 RQIEAKALRKLRHPSRYYKLKIF 1426
RQIEAKALRKLRHPSR KL+ F
Sbjct: 604 RQIEAKALRKLRHPSRARKLRGF 626
Score = 849 (303.9 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
Identities = 176/372 (47%), Positives = 251/372 (67%)
Query: 256 KMRKAFEKEG-YNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQIL 314
+M+K G Y+ +Y + H++I + ++ + ++ + + + E ++
Sbjct: 252 EMKKKKRDGGEYDENAYNELHDSIWEMVSQMKLSDSAVASVTQQIYALSKSIAAEESSLI 311
Query: 315 EIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKELQQKLINLQ 374
+ G+ R F+ + N N + + K ++ +L + ++ E+Q + + L
Sbjct: 312 SLA-ESYGVDRKSFLDAY-----NNNTIAEQAKTSFEWQNLLDKEGDTLLEMQNR-VKLL 364
Query: 375 TDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEG 434
+ P + + K+ E A +AK+EM +ANLRLV+SIAKKY++RGLQFLDL+QEG
Sbjct: 365 SGEDCP-GSFKALVAKIQKHERTANRAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEG 423
Query: 435 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISR 494
NIGLMKAVDKF+Y+RGYKFSTYATWW+RQAITR+IADQARTIRIPVHMIET+NKI+R R
Sbjct: 424 NIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLR 483
Query: 495 QILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENM 554
Q+L E G EP ++ ++ + EKIRK+MKI K+PVS+ESP+GDD+ S GD IED+
Sbjct: 484 QMLHEIGREPTLEELSARLNINVEKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRA 543
Query: 555 LAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSS-DHTLEEVGKQFDVTRERI 613
+ P +AA+ A +R + +L++LTP+E ++LRMRFGI S DHTLEEVG+ F+VTRERI
Sbjct: 544 VKPENAAVLADLREITTKVLSTLTPKEERILRMRFGIGKSGKDHTLEEVGRLFNVTRERI 603
Query: 614 RQIEAKALRKLR 625
RQIEAKALRKLR
Sbjct: 604 RQIEAKALRKLR 615
Score = 189 (71.6 bits), Expect = 5.1e-105, Sum P(2) = 5.1e-105
Identities = 53/163 (32%), Positives = 82/163 (50%)
Query: 46 LIKLG-KERGYLTFSEINDFLPXXXXXXXXXXXXX-KTFRYMDISVSEH--VLDTETLML 101
LI G K+ G +TF ++ND L + ISV E V DT+ +
Sbjct: 14 LITKGIKQGGIVTFDDLNDALSDDEVVTSDSIDETISMLQDSGISVLEQSDVDDTDDTVT 73
Query: 102 SNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGL 161
D+ +EA S DFG+T DPI+MY+ EM SVELL+R+GEIEIAKRI+
Sbjct: 74 GESVVKDEEDEA-----SIRSWDFGQTDDPIRMYLCEMSSVELLSREGEIEIAKRIKSEK 128
Query: 162 KDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNF 204
+M+ + P + + D + ++ + +++D +D N+
Sbjct: 129 VNMLRCMVEAPLVLRTFMSWRDDLVNQQVLLRDLID--LDANY 169
Score = 189 (71.6 bits), Expect = 5.1e-105, Sum P(2) = 5.1e-105
Identities = 53/163 (32%), Positives = 82/163 (50%)
Query: 836 LIKLG-KERGYLTFSEINDFLPXXXXXXXXXXXXX-KTFRYMDISVSEH--VLDTETLML 891
LI G K+ G +TF ++ND L + ISV E V DT+ +
Sbjct: 14 LITKGIKQGGIVTFDDLNDALSDDEVVTSDSIDETISMLQDSGISVLEQSDVDDTDDTVT 73
Query: 892 SNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGL 951
D+ +EA S DFG+T DPI+MY+ EM SVELL+R+GEIEIAKRI+
Sbjct: 74 GESVVKDEEDEA-----SIRSWDFGQTDDPIRMYLCEMSSVELLSREGEIEIAKRIKSEK 128
Query: 952 KDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNF 994
+M+ + P + + D + ++ + +++D +D N+
Sbjct: 129 VNMLRCMVEAPLVLRTFMSWRDDLVNQQVLLRDLID--LDANY 169
Score = 50 (22.7 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 941 IEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEI-KIDEIV 986
IE +I L+ M+H I PT +E L A I+ +I K+ +IV
Sbjct: 472 IETVNKINRTLRQMLHEIGREPT--LEELSARLNINVEKIRKVMKIV 516
>TIGR_CMR|DET_0551 [details] [associations]
symbol:DET_0551 "RNA polymerase sigma factor RpoD"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_181295.1 ProteinModelPortal:Q3Z904 SMR:Q3Z904
STRING:Q3Z904 GeneID:3230115 KEGG:det:DET0551 PATRIC:21608171
OMA:FISHLER ProtClustDB:CLSK935624
BioCyc:DETH243164:GJNF-551-MONOMER Uniprot:Q3Z904
Length = 520
Score = 851 (304.6 bits), Expect = 7.1e-94, Sum P(3) = 7.1e-94
Identities = 159/244 (65%), Positives = 205/244 (84%)
Query: 1185 EMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 1244
E+ A++A+R + +ANLRLV+S+AKK+ RG+ LDLIQEGNIGL++AV+KF++ RG+KFS
Sbjct: 277 EIDAKRAERHLIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKFS 336
Query: 1245 TYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKME 1304
TYATWWIRQAITR+IADQARTIRIPVHM+ETINK+ ISRQ+ Q+ G EP P IA++M+
Sbjct: 337 TYATWWIRQAITRAIADQARTIRIPVHMVETINKLLSISRQLSQKLGREPTPDEIAVEMD 396
Query: 1305 MPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDIL 1364
+P EK+R+I K+++ PVS+ESP+G++EDSHLGDFIED+N LAP DAA ++ + +L
Sbjct: 397 LPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAASRQLLKEQIDTVL 456
Query: 1365 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLK 1424
SLTPRE +VL++RFG+E TLEEVGK+F+VTRERIRQIEAKALRKLRHPSR KLK
Sbjct: 457 GSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLK 516
Query: 1425 IFLE 1428
+LE
Sbjct: 517 DYLE 520
Score = 808 (289.5 bits), Expect = 6.4e-87, Sum P(2) = 6.4e-87
Identities = 150/231 (64%), Positives = 195/231 (84%)
Query: 395 EMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 454
E+ A++A+R + +ANLRLV+S+AKK+ RG+ LDLIQEGNIGL++AV+KF++ RG+KFS
Sbjct: 277 EIDAKRAERHLIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKFS 336
Query: 455 TYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKME 514
TYATWWIRQAITR+IADQARTIRIPVHM+ETINK+ ISRQ+ Q+ G EP P IA++M+
Sbjct: 337 TYATWWIRQAITRAIADQARTIRIPVHMVETINKLLSISRQLSQKLGREPTPDEIAVEMD 396
Query: 515 MPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDIL 574
+P EK+R+I K+++ PVS+ESP+G++EDSHLGDFIED+N LAP DAA ++ + +L
Sbjct: 397 LPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAASRQLLKEQIDTVL 456
Query: 575 NSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
SLTPRE +VL++RFG+E TLEEVGK+F+VTRERIRQIEAKALRKLR
Sbjct: 457 GSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLR 507
Score = 96 (38.9 bits), Expect = 7.1e-94, Sum P(3) = 7.1e-94
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 879 VSEHVLDTETLMLSNITSDDDVEEAT---EAALSTVDSDFGRTKDPIKMYMREMGSVELL 935
++E L E M+ + +D+++ E L +D+ G DP++MY+ E+G V LL
Sbjct: 58 LTEEELAAEADMMPD--TDEEIGPLNIDLEIPLEQIDTQ-GIVDDPVRMYLHEIGRVPLL 114
Query: 936 TRDGEIEIAKRIEEG 950
+ + E +AK++EEG
Sbjct: 115 SAEDEKTLAKKMEEG 129
Score = 96 (38.9 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 89 VSEHVLDTETLMLSNITSDDDVEEAT---EAALSTVDSDFGRTKDPIKMYMREMGSVELL 145
++E L E M+ + +D+++ E L +D+ G DP++MY+ E+G V LL
Sbjct: 58 LTEEELAAEADMMPD--TDEEIGPLNIDLEIPLEQIDTQ-GIVDDPVRMYLHEIGRVPLL 114
Query: 146 TRDGEIEIAKRIEEG 160
+ + E +AK++EEG
Sbjct: 115 SAEDEKTLAKKMEEG 129
Score = 48 (22.0 bits), Expect = 7.8e-89, Sum P(3) = 7.8e-89
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 476 IRIPVHMIETINKISRISRQILQETGSEP-----DPSVIAIKMEMPEEKIRKI 523
+ IP+ I+T + R L E G P D +A KME ++IR+I
Sbjct: 84 LEIPLEQIDTQGIVDDPVRMYLHEIGRVPLLSAEDEKTLAKKME-EGKRIREI 135
Score = 48 (22.0 bits), Expect = 1.0e-88, Sum P(3) = 1.0e-88
Identities = 21/88 (23%), Positives = 40/88 (45%)
Query: 535 SPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMS 594
SP +D + D +ED + ++A + +KDI ++ P E + +M
Sbjct: 11 SPDDTYDDKDIEDGLEDIHEEQDAEAENDKMAEPDLKDIADTDIPAELTEEELAAEADMM 70
Query: 595 SDHTLEEVGKQFDVTRE-RIRQIEAKAL 621
D T EE+G ++ E + QI+ + +
Sbjct: 71 PD-TDEEIGP-LNIDLEIPLEQIDTQGI 96
Score = 41 (19.5 bits), Expect = 7.1e-94, Sum P(3) = 7.1e-94
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 147 RDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAAD 183
+D E E K E LKD+ A + P + E +AA+
Sbjct: 32 QDAEAENDKMAEPDLKDI--ADTDIPAELTEEELAAE 66
Score = 41 (19.5 bits), Expect = 6.8e-86, Sum P(2) = 6.8e-86
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 937 RDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAAD 973
+D E E K E LKD+ A + P + E +AA+
Sbjct: 32 QDAEAENDKMAEPDLKDI--ADTDIPAELTEEELAAE 66
Score = 40 (19.1 bits), Expect = 1.0e-88, Sum P(3) = 1.0e-88
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 774 VCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKNAFSFDIKSNSREEIENLRKKF 833
V LL A D+K L K + IR+ + K+ + +S + L +
Sbjct: 111 VPLLSAEDEKT-----LAKKMEEGKRIREIRQECLEKRGRYPSAAESFLCM-LRELSQAT 164
Query: 834 KILIKLGKERGYLTFSEINDFL 855
++L +LG+E G T + + + +
Sbjct: 165 EVLFQLGQELGMDTSASLKNVI 186
>TIGR_CMR|BA_4515 [details] [associations]
symbol:BA_4515 "RNA polymerase sigma-43 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03086 TIGRFAMs:TIGR02393 HSSP:Q9EZJ8
ProtClustDB:PRK09210 RefSeq:NP_846739.1 RefSeq:YP_021160.1
RefSeq:YP_030442.1 ProteinModelPortal:Q81LU5 SMR:Q81LU5
IntAct:Q81LU5 DNASU:1088240 EnsemblBacteria:EBBACT00000011556
EnsemblBacteria:EBBACT00000017175 EnsemblBacteria:EBBACT00000020140
GeneID:1088240 GeneID:2819028 GeneID:2852221 KEGG:ban:BA_4515
KEGG:bar:GBAA_4515 KEGG:bat:BAS4194 OMA:AERMSSF
BioCyc:BANT260799:GJAJ-4250-MONOMER
BioCyc:BANT261594:GJ7F-4392-MONOMER Uniprot:Q81LU5
Length = 373
Score = 833 (298.3 bits), Expect = 6.6e-92, Sum P(2) = 6.6e-92
Identities = 156/239 (65%), Positives = 200/239 (83%)
Query: 1190 KAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 1249
+AKR + EANLRLV+SIAK+Y RG+ FLDLIQEGN+GL+KAV+KF+YR+G+KFSTYATW
Sbjct: 135 EAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATW 194
Query: 1250 WIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEK 1309
WIRQAITR+IADQARTIRIPVHM+ETINK+ R+ RQ+LQ+ G EP P I +M++ EK
Sbjct: 195 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEK 254
Query: 1310 IRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTP 1369
+R+I+KIA+EPVS+E+P+G+++DSHLGDFIED+ +P+D A ++ ++D+L++LT
Sbjct: 255 VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTD 314
Query: 1370 RESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIFLE 1428
RE VLR+RFG++ TLEEVGK F VTRERIRQIEAKALRKLRHPSR +LK FLE
Sbjct: 315 REENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE 373
Score = 790 (283.2 bits), Expect = 3.8e-87, Sum P(2) = 3.8e-87
Identities = 147/226 (65%), Positives = 190/226 (84%)
Query: 400 KAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 459
+AKR + EANLRLV+SIAK+Y RG+ FLDLIQEGN+GL+KAV+KF+YR+G+KFSTYATW
Sbjct: 135 EAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATW 194
Query: 460 WIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEK 519
WIRQAITR+IADQARTIRIPVHM+ETINK+ R+ RQ+LQ+ G EP P I +M++ EK
Sbjct: 195 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEK 254
Query: 520 IRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTP 579
+R+I+KIA+EPVS+E+P+G+++DSHLGDFIED+ +P+D A ++ ++D+L++LT
Sbjct: 255 VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTD 314
Query: 580 RESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
RE VLR+RFG++ TLEEVGK F VTRERIRQIEAKALRKLR
Sbjct: 315 REENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 360
Score = 117 (46.2 bits), Expect = 6.6e-92, Sum P(2) = 6.6e-92
Identities = 40/155 (25%), Positives = 78/155 (50%)
Query: 46 LIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDTETLMLSN-I 104
L +LGK+RG LT+ EI + + + + Y+ + V D + ++ I
Sbjct: 24 LTELGKKRGVLTYEEIAERM---NGFEIESDQMDEYYEYLGEQGIDLVGDNDEGPNNHQI 80
Query: 105 TSDDDVEEATEAALSTVDSDFG-RTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGLKD 163
T ++ E L+ + G + DP++MY++E+G V+LL+ + EI +A RIEEG ++
Sbjct: 81 TKTEE-----EFDLNDLSVPPGVKINDPVRMYLKEIGRVDLLSAEEEIRLATRIEEGDEE 135
Query: 164 MIHAISSCPTTIMEILIAADKISKNEIKIDEIVDG 198
++ ++ + IA + + + +D I +G
Sbjct: 136 AKRRLAEANLRLV-VSIAKRYVGRGMLFLDLIQEG 169
Score = 117 (46.2 bits), Expect = 6.6e-92, Sum P(2) = 6.6e-92
Identities = 40/155 (25%), Positives = 78/155 (50%)
Query: 836 LIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDTETLMLSN-I 894
L +LGK+RG LT+ EI + + + + Y+ + V D + ++ I
Sbjct: 24 LTELGKKRGVLTYEEIAERM---NGFEIESDQMDEYYEYLGEQGIDLVGDNDEGPNNHQI 80
Query: 895 TSDDDVEEATEAALSTVDSDFG-RTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGLKD 953
T ++ E L+ + G + DP++MY++E+G V+LL+ + EI +A RIEEG ++
Sbjct: 81 TKTEE-----EFDLNDLSVPPGVKINDPVRMYLKEIGRVDLLSAEEEIRLATRIEEGDEE 135
Query: 954 MIHAISSCPTTIMEILIAADKISKNEIKIDEIVDG 988
++ ++ + IA + + + +D I +G
Sbjct: 136 AKRRLAEANLRLV-VSIAKRYVGRGMLFLDLIQEG 169
>TIGR_CMR|CJE_1081 [details] [associations]
symbol:CJE_1081 "RNA polymerase sigma factor RpoD"
species:195099 "Campylobacter jejuni RM1221" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_179074.1 ProteinModelPortal:Q5HUG1
SMR:Q5HUG1 STRING:Q5HUG1 GeneID:3231590 KEGG:cjr:CJE1081
PATRIC:20043971 OMA:ILDAICS BioCyc:CJEJ195099:GJC0-1107-MONOMER
Uniprot:Q5HUG1
Length = 622
Score = 902 (322.6 bits), Expect = 6.3e-90, P = 6.3e-90
Identities = 211/571 (36%), Positives = 328/571 (57%)
Query: 872 FRYMDISVSEHVLDTETLMLSNIT-SDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMG 930
F +I+ +++ D + L D +E + A ++ R+ P++MY+REMG
Sbjct: 55 FSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRSDSPVRMYLREMG 114
Query: 931 SVELLTRDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLI 990
+ LL +D EIEI+K+IE G +I A S P I IL + + E ++ E+
Sbjct: 115 QIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLINRERRVKELFKSFD 174
Query: 991 DKNFSSXXXXXXXXXXXXXXXXXXXXXXADLSTEQLEKLKYESLIKFSNISFHFDKMRKA 1050
D+ S + +T++ K + E +K +K +K
Sbjct: 175 DEEKSDDKLDELDIDEDEENETELESD--EENTKKNSKKEDERTLKVIEKFKALEKAKKD 232
Query: 1051 FEKEGYNSES--------YIKAHNNISNE-MLGIRFTAKSIEKLCDTLRNQINQVTQIEK 1101
+ K + ES I NI E ++ + T+K I ++ ++ + + +K
Sbjct: 233 WLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEIVKSMETALKSDEEFDK 292
Query: 1102 QILEIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKELQQKLI 1161
++ + + M K + ++ + E + + IK+L Q
Sbjct: 293 ELKRLEY-RLPMFSDELKKRHADILKDITKLSKEEITERALETTMVSTYMEIKKLFQTKE 351
Query: 1162 NLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLI 1221
+ L + L++I ++ G+ + +AK M ++NLRLV+SIAK+YT+RGL FLDLI
Sbjct: 352 ASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRLVVSIAKRYTNRGLPFLDLI 411
Query: 1222 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISR 1281
QEGNIGLMKAVDKFEY+RGYKFSTYATWWIRQAI+R+IADQARTIRIP+HMIETIN+I++
Sbjct: 412 QEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINQINK 471
Query: 1282 ISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIED 1341
I R+ LQ+ G EPD SVIA ++ + +K+++++KI KEP+S+E+P+G+++D GDF+ED
Sbjct: 472 IIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITKEPISLEAPIGNEDDGKFGDFVED 531
Query: 1342 ENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGI-EMSSDHTLEEVGKQFDVTR 1400
N L+P D L ++ + ++L+ L RE V+RMRFG+ + SD TLEE+GK+ +VTR
Sbjct: 532 RNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTR 591
Query: 1401 ERIRQIEAKALRKLRHPSRYYKLKIFLEGKK 1431
ER+RQIE+ A++KL+HP KLK ++EG K
Sbjct: 592 ERVRQIESSAIKKLKHPKVGRKLKNYIEGWK 622
Score = 866 (309.9 bits), Expect = 6.0e-86, P = 6.0e-86
Identities = 203/555 (36%), Positives = 318/555 (57%)
Query: 82 FRYMDISVSEHVLDTETLMLSNIT-SDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMG 140
F +I+ +++ D + L D +E + A ++ R+ P++MY+REMG
Sbjct: 55 FSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRSDSPVRMYLREMG 114
Query: 141 SVELLTRDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLI 200
+ LL +D EIEI+K+IE G +I A S P I IL + + E ++ E+
Sbjct: 115 QIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLINRERRVKELFKSFD 174
Query: 201 DKNFSSXXXXXXXXXXXXXXXXXXXXXXADLSTEQLEKLKYESLIKFSNISFHFDKMRKA 260
D+ S + +T++ K + E +K +K +K
Sbjct: 175 DEEKSDDKLDELDIDEDEENETELESD--EENTKKNSKKEDERTLKVIEKFKALEKAKKD 232
Query: 261 FEKEGYNSES--------YIKAHNNISNE-MLGIRFTAKSIEKLCDTLRNQINQVTQIEK 311
+ K + ES I NI E ++ + T+K I ++ ++ + + +K
Sbjct: 233 WLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEIVKSMETALKSDEEFDK 292
Query: 312 QILEIVVNKCGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKELQQKLI 371
++ + + M K + ++ + E + + IK+L Q
Sbjct: 293 ELKRLEY-RLPMFSDELKKRHADILKDITKLSKEEITERALETTMVSTYMEIKKLFQTKE 351
Query: 372 NLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLI 431
+ L + L++I ++ G+ + +AK M ++NLRLV+SIAK+YT+RGL FLDLI
Sbjct: 352 ASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRLVVSIAKRYTNRGLPFLDLI 411
Query: 432 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISR 491
QEGNIGLMKAVDKFEY+RGYKFSTYATWWIRQAI+R+IADQARTIRIP+HMIETIN+I++
Sbjct: 412 QEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINQINK 471
Query: 492 ISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIED 551
I R+ LQ+ G EPD SVIA ++ + +K+++++KI KEP+S+E+P+G+++D GDF+ED
Sbjct: 472 IIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITKEPISLEAPIGNEDDGKFGDFVED 531
Query: 552 ENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGI-EMSSDHTLEEVGKQFDVTR 610
N L+P D L ++ + ++L+ L RE V+RMRFG+ + SD TLEE+GK+ +VTR
Sbjct: 532 RNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTR 591
Query: 611 ERIRQIEAKALRKLR 625
ER+RQIE+ A++KL+
Sbjct: 592 ERVRQIESSAIKKLK 606
>TIGR_CMR|CHY_0455 [details] [associations]
symbol:CHY_0455 "RNA polymerase sigma factor RpoD"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 KO:K03086 TIGRFAMs:TIGR02393 RefSeq:YP_359316.1
ProteinModelPortal:Q3AEW8 SMR:Q3AEW8 STRING:Q3AEW8 GeneID:3727139
KEGG:chy:CHY_0455 PATRIC:21274071 OMA:IDTIEDT ProtClustDB:PRK09210
BioCyc:CHYD246194:GJCN-456-MONOMER Uniprot:Q3AEW8
Length = 370
Score = 853 (305.3 bits), Expect = 1.6e-84, P = 1.6e-84
Identities = 185/353 (52%), Positives = 250/353 (70%)
Query: 1085 LCDTLRN-QINQVTQIEKQILEIVVNKCGMPRLHFIKVFPENEIN-LNWVDNETKIQH-- 1140
L D+L+N IN QI+ ++ E + N+ G + + PE E++ +N +D++ +
Sbjct: 28 LLDSLQNVDINS-EQID-ELYEYLANQ-G---IEVVPEIPELELDSINSLDDDVDFKPSD 81
Query: 1141 ----DYNLILCRNIPSIKELQQKLINL-QTDIVLPLNDLRDINRKMIAGEMKARKAKREM 1195
D +L + I ++ L + + ++ P ++ RK E +AKR++
Sbjct: 82 IDEVDLDLTIPEGIAIDDPVRMYLKEIGRVPLLTPEEEIELAKRKEEGDE----EAKRKL 137
Query: 1196 TEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI 1255
EANLRLV+SIAK+Y RG+ FLDLIQEGN+GL+KAV+KF+YR+GYKFSTYATWWIRQAI
Sbjct: 138 AEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAI 197
Query: 1256 TRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMK 1315
TR+IADQARTIRIPVHM+ETINK+ R+SR +LQE G EP P IA +M + E+K+R+IMK
Sbjct: 198 TRAIADQARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISEDKVREIMK 257
Query: 1316 IAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVL 1375
IA+EPVS+E+P+G++EDSHLGDF+ED + AP + A +R + ++L +LT RE KVL
Sbjct: 258 IAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLREQLDEVLKTLTEREQKVL 317
Query: 1376 RMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIFLE 1428
R+RFG++ TLEEVG+ F VTRERIRQIEAKALRKLRHPSR KLK FLE
Sbjct: 318 RLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKKLKDFLE 370
Score = 807 (289.1 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 175/340 (51%), Positives = 240/340 (70%)
Query: 295 LCDTLRN-QINQVTQIEKQILEIVVNKCGMPRLHFIKVFPENEIN-LNWVDNETKIQH-- 350
L D+L+N IN QI+ ++ E + N+ G + + PE E++ +N +D++ +
Sbjct: 28 LLDSLQNVDINS-EQID-ELYEYLANQ-G---IEVVPEIPELELDSINSLDDDVDFKPSD 81
Query: 351 ----DYNLILCRNIPSIKELQQKLINL-QTDIVLPLNDLRDINRKMIAGEMKARKAKREM 405
D +L + I ++ L + + ++ P ++ RK E +AKR++
Sbjct: 82 IDEVDLDLTIPEGIAIDDPVRMYLKEIGRVPLLTPEEEIELAKRKEEGDE----EAKRKL 137
Query: 406 TEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI 465
EANLRLV+SIAK+Y RG+ FLDLIQEGN+GL+KAV+KF+YR+GYKFSTYATWWIRQAI
Sbjct: 138 AEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAI 197
Query: 466 TRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMK 525
TR+IADQARTIRIPVHM+ETINK+ R+SR +LQE G EP P IA +M + E+K+R+IMK
Sbjct: 198 TRAIADQARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISEDKVREIMK 257
Query: 526 IAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVL 585
IA+EPVS+E+P+G++EDSHLGDF+ED + AP + A +R + ++L +LT RE KVL
Sbjct: 258 IAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLREQLDEVLKTLTEREQKVL 317
Query: 586 RMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
R+RFG++ TLEEVG+ F VTRERIRQIEAKALRKLR
Sbjct: 318 RLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLR 357
Score = 157 (60.3 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 51/172 (29%), Positives = 87/172 (50%)
Query: 33 REEIENLRKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEH 92
+E ++N +K +++ GK+RG LT+ ND L + + Y+ E
Sbjct: 2 KEIMQN--EKLMEIVEKGKKRGVLTY---NDLLDSLQNVDINSEQIDELYEYLANQGIEV 56
Query: 93 VLDTETLMLSNITS-DDDVEEATEAALSTVDSDF----G-RTKDPIKMYMREMGSVELLT 146
V + L L +I S DDDV+ + + VD D G DP++MY++E+G V LLT
Sbjct: 57 VPEIPELELDSINSLDDDVD-FKPSDIDEVDLDLTIPEGIAIDDPVRMYLKEIGRVPLLT 115
Query: 147 RDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDG 198
+ EIE+AKR EEG ++ ++ ++ + IA + + + +D I +G
Sbjct: 116 PEEEIELAKRKEEGDEEAKRKLAEANLRLV-VSIAKRYVGRGMLFLDLIQEG 166
Score = 157 (60.3 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 51/172 (29%), Positives = 87/172 (50%)
Query: 823 REEIENLRKKFKILIKLGKERGYLTFSEINDFLPXXXXXXXXXXXXXKTFRYMDISVSEH 882
+E ++N +K +++ GK+RG LT+ ND L + + Y+ E
Sbjct: 2 KEIMQN--EKLMEIVEKGKKRGVLTY---NDLLDSLQNVDINSEQIDELYEYLANQGIEV 56
Query: 883 VLDTETLMLSNITS-DDDVEEATEAALSTVDSDF----G-RTKDPIKMYMREMGSVELLT 936
V + L L +I S DDDV+ + + VD D G DP++MY++E+G V LLT
Sbjct: 57 VPEIPELELDSINSLDDDVD-FKPSDIDEVDLDLTIPEGIAIDDPVRMYLKEIGRVPLLT 115
Query: 937 RDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDG 988
+ EIE+AKR EEG ++ ++ ++ + IA + + + +D I +G
Sbjct: 116 PEEEIELAKRKEEGDEEAKRKLAEANLRLV-VSIAKRYVGRGMLFLDLIQEG 166
>TIGR_CMR|NSE_0312 [details] [associations]
symbol:NSE_0312 "RNA polymerase sigma factor RpoD"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 RefSeq:YP_506202.1
ProteinModelPortal:Q2GE94 SMR:Q2GE94 STRING:Q2GE94 GeneID:3931706
KEGG:nse:NSE_0312 PATRIC:22680715 OMA:HIHETAN
ProtClustDB:CLSK2527840 BioCyc:NSEN222891:GHFU-338-MONOMER
Uniprot:Q2GE94
Length = 620
Score = 731 (262.4 bits), Expect = 1.5e-83, Sum P(2) = 1.5e-83
Identities = 190/567 (33%), Positives = 302/567 (53%)
Query: 44 KILIKLGKERGYLTFSEIND-FLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDTETLMLS 102
K LI G +RG++T+ E++D F I + E D E +
Sbjct: 14 KALITKGVKRGFVTYGELSDSFSDEDFENLNCIEEAISKLEESGIGILEK--DEEDELSE 71
Query: 103 NITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGLK 162
+ +D EE EAA D G T DP+++Y+REM V+LL+RD E+EIAK I
Sbjct: 72 EVKEED--EEEDEAA----DI-LGHTDDPVRLYLREMSYVKLLSRDDEVEIAKAIVAEKF 124
Query: 163 DMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNFSSXXXXXXXXXXXXXXXX 222
+ + A+ P+ + I+ K+ + I + E+++ D S
Sbjct: 125 ESLSAVLLFPSVLKSIVNLGTKLRECTISLREVIES--DSGLKSELTEETGKGDDLFEGM 182
Query: 223 XXXXXXAD-LSTEQL-EKL-----KYESLIKFSNISFHFDKMRKAFEKEGYNSESYIKAH 275
+ +S E+L EK+ + E++I + +M K + E Y + H
Sbjct: 183 DGKPEEGNQMSDEELMEKVLDIFGELETIITSALDKAKEGQMVKIVDGEVILDPEYRELH 242
Query: 276 NNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHFIKVFPEN 335
N + ++ K + + + R + N++ +K++L + + G+ R IK
Sbjct: 243 TLAVNHLNQVKLNPKLLAEFFENTRKK-NELILEKKKVLLTFLEEHGLDRTVLIK----G 297
Query: 336 EINLNWVDNETKIQHDYNLILCRNIPSIKELQQKLINLQTDIVLPLNDLRDINRKMIAGE 395
++++ +++ ++N+ C S++E + L+ + + + + RK+
Sbjct: 298 KVHILDAVVLSELLKEHNI--CDTHFSLEEFLSPIRELEKNEGMDYRSISFLTRKVATHL 355
Query: 396 MKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 455
A AK M EANLRLVISIAKKYT+RG+ F DLIQEGNIGLMKAVDKF++RRG+KFST
Sbjct: 356 DNANAAKHRMVEANLRLVISIAKKYTNRGMPFPDLIQEGNIGLMKAVDKFDHRRGHKFST 415
Query: 456 YATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEM 515
YATWW RQAITR+IAD +R PVH+ ET NK+ R R++ G EP IA +++
Sbjct: 416 YATWWCRQAITRAIADCGSIVRKPVHIHETANKVMRTRRRLYNLNGREPTVEEIANLLKI 475
Query: 516 PEEKIRKIMKIAKEPVSMESPVGDDEDS-HLGDFIEDENMLAPSDAALNASMRSVVKDIL 574
+K++K +K+ ++P+S+ESPVGDD +S GDFIED+N ++ D L+ ++R V+ + L
Sbjct: 476 SPDKVKKSLKVNQDPISLESPVGDDSNSGSFGDFIEDKNAVSQVDVVLSKNLRKVLDEAL 535
Query: 575 NSLTPRESKVLRMRFGIEMSSDHTLEE 601
L+PRE K+LR RFG+ +S H+ E+
Sbjct: 536 AMLSPREEKILRYRFGL-CNSVHSPED 561
Score = 731 (262.4 bits), Expect = 1.5e-83, Sum P(2) = 1.5e-83
Identities = 190/567 (33%), Positives = 302/567 (53%)
Query: 834 KILIKLGKERGYLTFSEIND-FLPXXXXXXXXXXXXXKTFRYMDISVSEHVLDTETLMLS 892
K LI G +RG++T+ E++D F I + E D E +
Sbjct: 14 KALITKGVKRGFVTYGELSDSFSDEDFENLNCIEEAISKLEESGIGILEK--DEEDELSE 71
Query: 893 NITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGLK 952
+ +D EE EAA D G T DP+++Y+REM V+LL+RD E+EIAK I
Sbjct: 72 EVKEED--EEEDEAA----DI-LGHTDDPVRLYLREMSYVKLLSRDDEVEIAKAIVAEKF 124
Query: 953 DMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNFSSXXXXXXXXXXXXXXXX 1012
+ + A+ P+ + I+ K+ + I + E+++ D S
Sbjct: 125 ESLSAVLLFPSVLKSIVNLGTKLRECTISLREVIES--DSGLKSELTEETGKGDDLFEGM 182
Query: 1013 XXXXXXAD-LSTEQL-EKL-----KYESLIKFSNISFHFDKMRKAFEKEGYNSESYIKAH 1065
+ +S E+L EK+ + E++I + +M K + E Y + H
Sbjct: 183 DGKPEEGNQMSDEELMEKVLDIFGELETIITSALDKAKEGQMVKIVDGEVILDPEYRELH 242
Query: 1066 NNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKCGMPRLHFIKVFPEN 1125
N + ++ K + + + R + N++ +K++L + + G+ R IK
Sbjct: 243 TLAVNHLNQVKLNPKLLAEFFENTRKK-NELILEKKKVLLTFLEEHGLDRTVLIK----G 297
Query: 1126 EINLNWVDNETKIQHDYNLILCRNIPSIKELQQKLINLQTDIVLPLNDLRDINRKMIAGE 1185
++++ +++ ++N+ C S++E + L+ + + + + RK+
Sbjct: 298 KVHILDAVVLSELLKEHNI--CDTHFSLEEFLSPIRELEKNEGMDYRSISFLTRKVATHL 355
Query: 1186 MKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 1245
A AK M EANLRLVISIAKKYT+RG+ F DLIQEGNIGLMKAVDKF++RRG+KFST
Sbjct: 356 DNANAAKHRMVEANLRLVISIAKKYTNRGMPFPDLIQEGNIGLMKAVDKFDHRRGHKFST 415
Query: 1246 YATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEM 1305
YATWW RQAITR+IAD +R PVH+ ET NK+ R R++ G EP IA +++
Sbjct: 416 YATWWCRQAITRAIADCGSIVRKPVHIHETANKVMRTRRRLYNLNGREPTVEEIANLLKI 475
Query: 1306 PEEKIRKIMKIAKEPVSMESPVGDDEDS-HLGDFIEDENMLAPSDAALNASMRSVVKDIL 1364
+K++K +K+ ++P+S+ESPVGDD +S GDFIED+N ++ D L+ ++R V+ + L
Sbjct: 476 SPDKVKKSLKVNQDPISLESPVGDDSNSGSFGDFIEDKNAVSQVDVVLSKNLRKVLDEAL 535
Query: 1365 NSLTPRESKVLRMRFGIEMSSDHTLEE 1391
L+PRE K+LR RFG+ +S H+ E+
Sbjct: 536 AMLSPREEKILRYRFGL-CNSVHSPED 561
Score = 144 (55.7 bits), Expect = 1.5e-83, Sum P(2) = 1.5e-83
Identities = 31/68 (45%), Positives = 49/68 (72%)
Query: 1363 ILNSL-TPRESKVLR-MRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRY 1420
+ NS+ +P + L+ ++ + ++ TLE+VG ++VTRERIRQIE+K+LRK+R PSR
Sbjct: 552 LCNSVHSPEDEHYLKSLKIDLNRGTNLTLEQVGILYNVTRERIRQIESKSLRKMRSPSRS 611
Query: 1421 YKLKIFLE 1428
KL+ FL+
Sbjct: 612 IKLRTFLK 619
Score = 111 (44.1 bits), Expect = 4.6e-80, Sum P(2) = 4.6e-80
Identities = 24/55 (43%), Positives = 40/55 (72%)
Query: 573 ILNSL-TPRESKVLR-MRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
+ NS+ +P + L+ ++ + ++ TLE+VG ++VTRERIRQIE+K+LRK+R
Sbjct: 552 LCNSVHSPEDEHYLKSLKIDLNRGTNLTLEQVGILYNVTRERIRQIESKSLRKMR 606
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 31 NSREEIENLRKKFKILIKLGKERG 54
N+R++ E + +K K+L+ +E G
Sbjct: 265 NTRKKNELILEKKKVLLTFLEEHG 288
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 821 NSREEIENLRKKFKILIKLGKERG 844
N+R++ E + +K K+L+ +E G
Sbjct: 265 NTRKKNELILEKKKVLLTFLEEHG 288
>UNIPROTKB|P0A602 [details] [associations]
symbol:rpoD "RNA polymerase sigma factor RpoD" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0009415
"response to water stimulus" evidence=IEP] [GO:0016987 "sigma
factor activity" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0052572 "response to host immune response" evidence=IEP]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 GO:GO:0009405 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0052572
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 GO:GO:0009415 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03086
TIGRFAMs:TIGR02393 EMBL:U10059 EMBL:U21134 PIR:B70531
RefSeq:NP_217219.1 RefSeq:NP_337278.1 RefSeq:YP_006516147.1
ProteinModelPortal:P0A602 SMR:P0A602 PRIDE:P0A602
EnsemblBacteria:EBMYCT00000003025 EnsemblBacteria:EBMYCT00000070252
GeneID:13319430 GeneID:887477 GeneID:925521 KEGG:mtc:MT2777
KEGG:mtu:Rv2703 KEGG:mtv:RVBD_2703 PATRIC:18127848
TubercuList:Rv2703 OMA:LMSEMAE ProtClustDB:PRK05901 Uniprot:P0A602
Length = 528
Score = 716 (257.1 bits), Expect = 1.8e-77, Sum P(2) = 1.8e-77
Identities = 131/239 (54%), Positives = 185/239 (77%)
Query: 1190 KAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 1249
+AK + EANLRLV+S+AK+YT RG+ FLDLIQEGN+GL++AV+KF+Y +GYKFSTYATW
Sbjct: 290 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 349
Query: 1250 WIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEK 1309
WIRQAITR++ADQARTIRIPVHM+E INK+ RI R++LQ+ G EP P +A +M++ EK
Sbjct: 350 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEK 409
Query: 1310 IRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTP 1369
+ +I + A+EP+S++ +GD+ DS LGDFIED + DA ++ ++ +L++L+
Sbjct: 410 VLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSE 469
Query: 1370 RESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIFLE 1428
RE+ V+R+RFG+ TL+E+G+ + VTRERIRQIE+K + KLRHPSR L+ +L+
Sbjct: 470 REAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528
Score = 685 (246.2 bits), Expect = 4.1e-74, Sum P(2) = 4.1e-74
Identities = 125/226 (55%), Positives = 176/226 (77%)
Query: 400 KAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 459
+AK + EANLRLV+S+AK+YT RG+ FLDLIQEGN+GL++AV+KF+Y +GYKFSTYATW
Sbjct: 290 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 349
Query: 460 WIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEK 519
WIRQAITR++ADQARTIRIPVHM+E INK+ RI R++LQ+ G EP P +A +M++ EK
Sbjct: 350 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEK 409
Query: 520 IRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTP 579
+ +I + A+EP+S++ +GD+ DS LGDFIED + DA ++ ++ +L++L+
Sbjct: 410 VLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSE 469
Query: 580 RESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
RE+ V+R+RFG+ TL+E+G+ + VTRERIRQIE+K + KLR
Sbjct: 470 REAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 515
Score = 102 (41.0 bits), Expect = 1.8e-77, Sum P(2) = 1.8e-77
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 107 DDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGL 161
D+D EA A D++ + D ++ Y++++G V LL + E+E+AKRIE GL
Sbjct: 205 DEDESEALRQARK--DAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGL 257
Score = 102 (41.0 bits), Expect = 1.8e-77, Sum P(2) = 1.8e-77
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 897 DDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGL 951
D+D EA A D++ + D ++ Y++++G V LL + E+E+AKRIE GL
Sbjct: 205 DEDESEALRQARK--DAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGL 257
Score = 44 (20.5 bits), Expect = 2.3e-71, Sum P(2) = 2.3e-71
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 540 DEDSHLGDFI--EDENML---APSDAALNASMRSV 569
++D GDF+ EDE+ A DA L AS SV
Sbjct: 194 EKDKASGDFVWDEDESEALRQARKDAELTASADSV 228
Score = 41 (19.5 bits), Expect = 1.1e-72, Sum P(3) = 1.1e-72
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 94 LDTETLMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVEL 144
L+ E + T+DDD E A DF +D + + EL
Sbjct: 171 LEAEAAVAPGQTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAEL 221
Score = 41 (19.5 bits), Expect = 4.7e-71, Sum P(2) = 4.7e-71
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 884 LDTETLMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVEL 934
L+ E + T+DDD E A DF +D + + EL
Sbjct: 171 LEAEAAVAPGQTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAEL 221
Score = 38 (18.4 bits), Expect = 1.1e-72, Sum P(3) = 1.1e-72
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 430 LIQEGNIGLMKAVDKFEYRRGYKFSTYAT 458
L Q G + L+ A ++ E + + YAT
Sbjct: 232 LKQIGKVALLNAEEEVELAKRIEAGLYAT 260
>UNIPROTKB|Q59563 [details] [associations]
symbol:mysB "RNA polymerase sigma factor" species:1773
"Mycobacterium tuberculosis" [GO:0001666 "response to hypoxia"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009408 "response to heat"
evidence=IEP] [GO:0009410 "response to xenobiotic stimulus"
evidence=IEP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0019217 "regulation of fatty acid metabolic process"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0050708 "regulation of protein secretion" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0045893 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0001666
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0019217 GO:GO:0009408 GO:GO:0009410 GO:GO:0050708
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0043175 EMBL:U10059 KO:K03087 HSSP:Q9EZJ8
EMBL:AL123456 PIR:JC5011 RefSeq:NP_217226.1 RefSeq:NP_337285.1
RefSeq:YP_006516154.1 SMR:Q59563 EnsemblBacteria:EBMYCT00000003840
EnsemblBacteria:EBMYCT00000072906 GeneID:13319437 GeneID:888580
GeneID:925516 KEGG:mtc:MT2783 KEGG:mtu:Rv2710 KEGG:mtv:RVBD_2710
PATRIC:18127862 TubercuList:Rv2710 OMA:DHARDPV ProtClustDB:PRK07921
Uniprot:Q59563
Length = 323
Score = 635 (228.6 bits), Expect = 5.6e-68, Sum P(2) = 5.6e-68
Identities = 116/251 (46%), Positives = 183/251 (72%)
Query: 1178 NRKM-IAGEMK-ARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKF 1235
NRK +A ++ A+R + EANLRLV+S+AK+YT RG+ LDLIQEGN+GL++A++KF
Sbjct: 71 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 130
Query: 1236 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPD 1295
+Y +G+KFSTYATWWIRQAITR +ADQ+RTIR+PVH++E +NK++RI R++ Q G E
Sbjct: 131 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREAT 190
Query: 1296 PSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNAS 1355
+A + +P +KI +++ +++PVS++ PVG +E++ LGDFIED ++ +A +
Sbjct: 191 DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAEL 250
Query: 1356 MRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
+ + ++ +L +L RE +V+R+RFG++ TL+++GK F ++RER+RQIE + KLR
Sbjct: 251 LHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLR 310
Query: 1416 HPSRYYKLKIF 1426
H R +L+ +
Sbjct: 311 HGERADRLRSY 321
Score = 620 (223.3 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 113/240 (47%), Positives = 177/240 (73%)
Query: 388 NRKM-IAGEMK-ARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKF 445
NRK +A ++ A+R + EANLRLV+S+AK+YT RG+ LDLIQEGN+GL++A++KF
Sbjct: 71 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 130
Query: 446 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPD 505
+Y +G+KFSTYATWWIRQAITR +ADQ+RTIR+PVH++E +NK++RI R++ Q G E
Sbjct: 131 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREAT 190
Query: 506 PSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNAS 565
+A + +P +KI +++ +++PVS++ PVG +E++ LGDFIED ++ +A +
Sbjct: 191 DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAEL 250
Query: 566 MRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
+ + ++ +L +L RE +V+R+RFG++ TL+++GK F ++RER+RQIE + KLR
Sbjct: 251 LHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLR 310
Score = 95 (38.5 bits), Expect = 5.6e-68, Sum P(2) = 5.6e-68
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 114 TEAALSTVDSDFGRTK---DPIKMYMREMGSVELLTRDGEIEIAKRIEEGL 161
T A S VDSD D +++Y+ +G LL GE+E+AKRIE GL
Sbjct: 6 TRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGL 56
Score = 95 (38.5 bits), Expect = 5.6e-68, Sum P(2) = 5.6e-68
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 904 TEAALSTVDSDFGRTK---DPIKMYMREMGSVELLTRDGEIEIAKRIEEGL 951
T A S VDSD D +++Y+ +G LL GE+E+AKRIE GL
Sbjct: 6 TRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGL 56
>TIGR_CMR|GSU_1525 [details] [associations]
symbol:GSU_1525 "RNA polymerase sigma-70 factor family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03086 OMA:IDTIEDT RefSeq:NP_952576.1 ProteinModelPortal:Q74CZ4
SMR:Q74CZ4 GeneID:2687268 KEGG:gsu:GSU1525 PATRIC:22025893
ProtClustDB:CLSK828404 BioCyc:GSUL243231:GH27-1508-MONOMER
Uniprot:Q74CZ4
Length = 328
Score = 551 (199.0 bits), Expect = 8.7e-58, Sum P(2) = 8.7e-58
Identities = 109/238 (45%), Positives = 166/238 (69%)
Query: 390 KMIAGEM-KARKAKRE-MTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEY 447
K +AG + K KA R+ M E+NLRLV+ IAK+Y +RGL FLDLI+EGN+GL+KAV++F+
Sbjct: 79 KELAGRIAKGDKAARDKMIESNLRLVVKIAKRYINRGLPFLDLIEEGNMGLIKAVERFKL 138
Query: 448 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPS 507
+ +FSTYATWWIRQ+I R++ +Q+RTIR+PVH+ + INK+ +I+R+++Q EP
Sbjct: 139 SKECRFSTYATWWIRQSIERALVNQSRTIRLPVHVSDDINKMLKITRELVQRLNREPSVK 198
Query: 508 VIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMR 567
+A +M++ +R++M + K+ S+E P+G++ D L D IED + ++P+ + +
Sbjct: 199 EVATEMKVNSAYVRRLMVLLKKTYSIERPMGENSDYFLIDTIEDTSTVSPAVLLEDLNKY 258
Query: 568 SVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
+V SL+ E +L +RFG+E TL+ +G+ F VTRERIRQIEAK+L KLR
Sbjct: 259 EIVSKWFASLSENEQTILTLRFGLEDKEPQTLDTIGRSFGVTRERIRQIEAKSLEKLR 316
Score = 551 (199.0 bits), Expect = 8.7e-58, Sum P(2) = 8.7e-58
Identities = 109/238 (45%), Positives = 166/238 (69%)
Query: 1180 KMIAGEM-KARKAKRE-MTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEY 1237
K +AG + K KA R+ M E+NLRLV+ IAK+Y +RGL FLDLI+EGN+GL+KAV++F+
Sbjct: 79 KELAGRIAKGDKAARDKMIESNLRLVVKIAKRYINRGLPFLDLIEEGNMGLIKAVERFKL 138
Query: 1238 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPS 1297
+ +FSTYATWWIRQ+I R++ +Q+RTIR+PVH+ + INK+ +I+R+++Q EP
Sbjct: 139 SKECRFSTYATWWIRQSIERALVNQSRTIRLPVHVSDDINKMLKITRELVQRLNREPSVK 198
Query: 1298 VIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMR 1357
+A +M++ +R++M + K+ S+E P+G++ D L D IED + ++P+ + +
Sbjct: 199 EVATEMKVNSAYVRRLMVLLKKTYSIERPMGENSDYFLIDTIEDTSTVSPAVLLEDLNKY 258
Query: 1358 SVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
+V SL+ E +L +RFG+E TL+ +G+ F VTRERIRQIEAK+L KLR
Sbjct: 259 EIVSKWFASLSENEQTILTLRFGLEDKEPQTLDTIGRSFGVTRERIRQIEAKSLEKLR 316
Score = 84 (34.6 bits), Expect = 8.7e-58, Sum P(2) = 8.7e-58
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 98 TLMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRI 157
T L +++ EE E + F D IK+Y+RE+ LLT D E E+A RI
Sbjct: 29 TFELEAAEEEEEPEEPAEVGKNIEQEHFD---DAIKLYLREIQRTRLLTADEEKELAGRI 85
Query: 158 EEGLK 162
+G K
Sbjct: 86 AKGDK 90
Score = 84 (34.6 bits), Expect = 8.7e-58, Sum P(2) = 8.7e-58
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 888 TLMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRI 947
T L +++ EE E + F D IK+Y+RE+ LLT D E E+A RI
Sbjct: 29 TFELEAAEEEEEPEEPAEVGKNIEQEHFD---DAIKLYLREIQRTRLLTADEEKELAGRI 85
Query: 948 EEGLK 952
+G K
Sbjct: 86 AKGDK 90
>TIGR_CMR|CBU_1669 [details] [associations]
symbol:CBU_1669 "RNA polymerase sigma factor RpoS"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE016828 GenomeReviews:AE016828_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:P00579 EMBL:AF244357
RefSeq:NP_820651.1 ProteinModelPortal:Q9KI19 SMR:Q9KI19
PRIDE:Q9KI19 GeneID:1209580 KEGG:cbu:CBU_1669 PATRIC:17932081
KO:K03087 OMA:HISAQAT ProtClustDB:CLSK914949
BioCyc:CBUR227377:GJ7S-1641-MONOMER TIGRFAMs:TIGR02394
Uniprot:Q9KI19
Length = 352
Score = 536 (193.7 bits), Expect = 2.2e-56, Sum P(2) = 2.2e-56
Identities = 105/240 (43%), Positives = 161/240 (67%)
Query: 1177 INRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFE 1236
I R++ G+ KARK +M EANLRLV+ IA+ Y +RGL FLDLI+EGN+GL+ AV+KF+
Sbjct: 102 IARRVHKGDPKARK---QMIEANLRLVVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKFD 158
Query: 1237 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDP 1296
RG++FSTYATWWIRQ I R+I +Q+RT+R+P+H+I+ +N R ++++ QE E P
Sbjct: 159 PERGFRFSTYATWWIRQTIERAIMNQSRTVRLPIHVIKELNVYLRTAKKLTQEVDHEATP 218
Query: 1297 SVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASM 1356
+A ++ P ++IR+IM +A S++ P+ +D L D + D+N + P+ N +
Sbjct: 219 EDVAHLIDKPVQEIRRIMDLAPSATSIDVPISEDGQKSLVDTLADDNNIDPARLIQNVDL 278
Query: 1357 RSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 1416
+ ++ L L R +V+ +RFG+ + TLE VGK +TRER+RQI+ AL++LRH
Sbjct: 279 QDHIERWLAQLDERHREVVILRFGLHENEKGTLEAVGKAVGLTRERVRQIQIDALQQLRH 338
Score = 528 (190.9 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 104/239 (43%), Positives = 160/239 (66%)
Query: 387 INRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFE 446
I R++ G+ KARK +M EANLRLV+ IA+ Y +RGL FLDLI+EGN+GL+ AV+KF+
Sbjct: 102 IARRVHKGDPKARK---QMIEANLRLVVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKFD 158
Query: 447 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDP 506
RG++FSTYATWWIRQ I R+I +Q+RT+R+P+H+I+ +N R ++++ QE E P
Sbjct: 159 PERGFRFSTYATWWIRQTIERAIMNQSRTVRLPIHVIKELNVYLRTAKKLTQEVDHEATP 218
Query: 507 SVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASM 566
+A ++ P ++IR+IM +A S++ P+ +D L D + D+N + P+ N +
Sbjct: 219 EDVAHLIDKPVQEIRRIMDLAPSATSIDVPISEDGQKSLVDTLADDNNIDPARLIQNVDL 278
Query: 567 RSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
+ ++ L L R +V+ +RFG+ + TLE VGK +TRER+RQI+ AL++LR
Sbjct: 279 QDHIERWLAQLDERHREVVILRFGLHENEKGTLEAVGKAVGLTRERVRQIQIDALQQLR 337
Score = 86 (35.3 bits), Expect = 2.2e-56, Sum P(2) = 2.2e-56
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 87 ISVSEH-VLDTETLMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELL 145
I S+H ++ +T T +D E A A T R+ DP ++Y+RE+G LL
Sbjct: 38 IKASDHGLIFAKTK--KETTEKEDAELANAKA-KTKKRRETRSSDPTQIYLRELGFQPLL 94
Query: 146 TRDGEIEIAKRIEEG----LKDMIHA 167
E++IA+R+ +G K MI A
Sbjct: 95 NAKEELKIARRVHKGDPKARKQMIEA 120
Score = 86 (35.3 bits), Expect = 2.2e-56, Sum P(2) = 2.2e-56
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 877 ISVSEH-VLDTETLMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELL 935
I S+H ++ +T T +D E A A T R+ DP ++Y+RE+G LL
Sbjct: 38 IKASDHGLIFAKTK--KETTEKEDAELANAKA-KTKKRRETRSSDPTQIYLRELGFQPLL 94
Query: 936 TRDGEIEIAKRIEEG----LKDMIHA 957
E++IA+R+ +G K MI A
Sbjct: 95 NAKEELKIARRVHKGDPKARKQMIEA 120
>TIGR_CMR|VC_0534 [details] [associations]
symbol:VC_0534 "RNA polymerase sigma factor RpoS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03087 TIGRFAMs:TIGR02394 EMBL:AF000945 PIR:A82312
RefSeq:NP_230185.1 ProteinModelPortal:O51804 SMR:O51804
DNASU:2615203 GeneID:2615203 KEGG:vch:VC0534 PATRIC:20080172
OMA:KWLDELN ProtClustDB:CLSK874000 Uniprot:O51804
Length = 335
Score = 530 (191.6 bits), Expect = 4.2e-56, Sum P(3) = 4.2e-56
Identities = 98/239 (41%), Positives = 164/239 (68%)
Query: 389 RKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYR 448
R+ + G+ ARK M E+NLRLV+ I+++Y++RGL LDLI+EGN+GL++AV+KF+
Sbjct: 82 RRALRGDEAARK---RMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPE 138
Query: 449 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSV 508
RG++FSTYATWWIRQ I R++ +Q RTIR+P+H+++ +N R +R++ Q EP P
Sbjct: 139 RGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEE 198
Query: 509 IAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRS 568
IA++++ P + + K++++ + S+++P+G D D L D + D + P + + +R
Sbjct: 199 IALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRE 258
Query: 569 VVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPL 627
+ + L+ L P++ +VL RFG+ TLEEVG++ ++TRER+RQI+ + LR+LR +
Sbjct: 259 SLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREI 317
Score = 529 (191.3 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 98/237 (41%), Positives = 163/237 (68%)
Query: 1179 RKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYR 1238
R+ + G+ ARK M E+NLRLV+ I+++Y++RGL LDLI+EGN+GL++AV+KF+
Sbjct: 82 RRALRGDEAARK---RMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPE 138
Query: 1239 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSV 1298
RG++FSTYATWWIRQ I R++ +Q RTIR+P+H+++ +N R +R++ Q EP P
Sbjct: 139 RGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEE 198
Query: 1299 IAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRS 1358
IA++++ P + + K++++ + S+++P+G D D L D + D + P + + +R
Sbjct: 199 IALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRE 258
Query: 1359 VVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
+ + L+ L P++ +VL RFG+ TLEEVG++ ++TRER+RQI+ + LR+LR
Sbjct: 259 SLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
Score = 76 (31.8 bits), Expect = 4.2e-56, Sum P(3) = 4.2e-56
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 93 VLDTETLMLSNITSDDDVEEATEAALSTVDSDF---GRTKDPIKMYMREMGSVELLTRDG 149
VL+T+ + +TSD+++ A E A V +F ++ D +MY+ E+G LLT +
Sbjct: 22 VLETD----AELTSDEELV-AVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEE 76
Query: 150 EIEIAKRIEEG 160
E+ A+R G
Sbjct: 77 EVLYARRALRG 87
Score = 76 (31.8 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 883 VLDTETLMLSNITSDDDVEEATEAALSTVDSDF---GRTKDPIKMYMREMGSVELLTRDG 939
VL+T+ + +TSD+++ A E A V +F ++ D +MY+ E+G LLT +
Sbjct: 22 VLETD----AELTSDEELV-AVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEE 76
Query: 940 EIEIAKRIEEG 950
E+ A+R G
Sbjct: 77 EVLYARRALRG 87
Score = 37 (18.1 bits), Expect = 4.2e-56, Sum P(3) = 4.2e-56
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 825 EIENLRKKFKILIKLG 840
++E LR+ +IL+K G
Sbjct: 307 QVEGLRRLREILVKQG 322
>UNIPROTKB|P13445 [details] [associations]
symbol:rpoS "RNA polymerase, sigma S (sigma 38) factor"
species:83333 "Escherichia coli K-12" [GO:0006950 "response to
stress" evidence=IDA] [GO:0001123 "transcription initiation from
bacterial-type RNA polymerase promoter" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016987 "sigma factor activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
EMBL:U29579 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:L07869 EMBL:D17549 eggNOG:COG0568 KO:K03087
TIGRFAMs:TIGR02394 EMBL:X16400 EMBL:D13548 EMBL:Z14969 PIR:A65055
RefSeq:NP_417221.1 RefSeq:YP_490950.1 ProteinModelPortal:P13445
SMR:P13445 DIP:DIP-10777N IntAct:P13445 MINT:MINT-1228474
PRIDE:P13445 EnsemblBacteria:EBESCT00000000907
EnsemblBacteria:EBESCT00000000908 EnsemblBacteria:EBESCT00000000909
EnsemblBacteria:EBESCT00000017671 GeneID:12933280 GeneID:947210
KEGG:ecj:Y75_p2679 KEGG:eco:b2741 PATRIC:32120886 EchoBASE:EB0505
EcoGene:EG10510 OMA:AARQVMI ProtClustDB:PRK05657
BioCyc:EcoCyc:RPOS-MONOMER BioCyc:ECOL316407:JW5437-MONOMER
BioCyc:MetaCyc:RPOS-MONOMER Genevestigator:P13445 Uniprot:P13445
Length = 330
Score = 505 (182.8 bits), Expect = 9.4e-51, Sum P(2) = 9.4e-51
Identities = 95/239 (39%), Positives = 158/239 (66%)
Query: 389 RKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYR 448
R+ + G++ +R R M E+NLRLV+ IA++Y +RGL LDLI+EGN+GL++AV+KF+
Sbjct: 81 RRALRGDVASR---RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPE 137
Query: 449 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSV 508
RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N R +R++ + EP
Sbjct: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197
Query: 509 IAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRS 568
IA +++ P + + +++++ + S+++P+G D + L D + DE P D + M+
Sbjct: 198 IAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257
Query: 569 VVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPL 627
+ L L ++ +VL RFG+ TLE+VG++ +TRER+RQI+ + LR+LR +
Sbjct: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316
Score = 504 (182.5 bits), Expect = 1.2e-50, Sum P(2) = 1.2e-50
Identities = 95/237 (40%), Positives = 157/237 (66%)
Query: 1179 RKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYR 1238
R+ + G++ +R R M E+NLRLV+ IA++Y +RGL LDLI+EGN+GL++AV+KF+
Sbjct: 81 RRALRGDVASR---RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPE 137
Query: 1239 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSV 1298
RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N R +R++ + EP
Sbjct: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197
Query: 1299 IAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRS 1358
IA +++ P + + +++++ + S+++P+G D + L D + DE P D + M+
Sbjct: 198 IAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257
Query: 1359 VVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
+ L L ++ +VL RFG+ TLE+VG++ +TRER+RQI+ + LR+LR
Sbjct: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314
Score = 64 (27.6 bits), Expect = 9.4e-51, Sum P(2) = 9.4e-51
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 93 VLDTETLMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIE 152
V D E ++ SD+D+ E E LS + R D ++Y+ E+G LLT + E+
Sbjct: 24 VFD-EKALVEQEPSDNDLAE--EELLSQGATQ--RVLDATQLYLGEIGYSPLLTAEEEVY 78
Query: 153 IAKRIEEG 160
A+R G
Sbjct: 79 FARRALRG 86
Score = 64 (27.6 bits), Expect = 1.2e-50, Sum P(2) = 1.2e-50
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 883 VLDTETLMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIE 942
V D E ++ SD+D+ E E LS + R D ++Y+ E+G LLT + E+
Sbjct: 24 VFD-EKALVEQEPSDNDLAE--EELLSQGATQ--RVLDATQLYLGEIGYSPLLTAEEEVY 78
Query: 943 IAKRIEEG 950
A+R G
Sbjct: 79 FARRALRG 86
>TIGR_CMR|SO_3432 [details] [associations]
symbol:SO_3432 "RNA polymerase sigma factor RpoS"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03087 TIGRFAMs:TIGR02394 OMA:KWLDELN
RefSeq:NP_718985.1 HSSP:Q9WX78 ProteinModelPortal:Q8EBR8 SMR:Q8EBR8
GeneID:1171107 KEGG:son:SO_3432 PATRIC:23526552
ProtClustDB:CLSK907167 Uniprot:Q8EBR8
Length = 326
Score = 510 (184.6 bits), Expect = 6.4e-50, Sum P(2) = 6.4e-50
Identities = 98/240 (40%), Positives = 159/240 (66%)
Query: 388 NRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEY 447
+RK + G K++ M E+NLRLV+ IA++Y +RGL LDLI+EGN+GL++AV+KF+
Sbjct: 76 SRKALKG---CEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDP 132
Query: 448 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPS 507
RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N R +R++ Q+ EP
Sbjct: 133 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAQKLDHEPTAE 192
Query: 508 VIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMR 567
IA K+++ + +++K+ ++ S++ P+G D D L D + D++ + P + +
Sbjct: 193 EIAEKLQVSSVDVSRMLKLNEKITSVDVPLGGDNDKALLDVLADDDNVGPDYKVQDEDIS 252
Query: 568 SVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPL 627
+ V LN L ++ +VL RFG+ TLE+VG + +TRER+RQI+ +AL++LR L
Sbjct: 253 NSVVKWLNELNTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQIQVEALKRLRDL 312
Score = 507 (183.5 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 97/238 (40%), Positives = 158/238 (66%)
Query: 1178 NRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEY 1237
+RK + G K++ M E+NLRLV+ IA++Y +RGL LDLI+EGN+GL++AV+KF+
Sbjct: 76 SRKALKG---CEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDP 132
Query: 1238 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPS 1297
RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N R +R++ Q+ EP
Sbjct: 133 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAQKLDHEPTAE 192
Query: 1298 VIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMR 1357
IA K+++ + +++K+ ++ S++ P+G D D L D + D++ + P + +
Sbjct: 193 EIAEKLQVSSVDVSRMLKLNEKITSVDVPLGGDNDKALLDVLADDDNVGPDYKVQDEDIS 252
Query: 1358 SVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
+ V LN L ++ +VL RFG+ TLE+VG + +TRER+RQI+ +AL++LR
Sbjct: 253 NSVVKWLNELNTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQIQVEALKRLR 310
Score = 51 (23.0 bits), Expect = 6.4e-50, Sum P(2) = 6.4e-50
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 121 VDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEG 160
V D + D ++Y+ E+G LL+ + E+ +++ +G
Sbjct: 43 VQDDLQKNLDATQLYLGEIGFSPLLSAEEEVYFSRKALKG 82
Score = 51 (23.0 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 911 VDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEG 950
V D + D ++Y+ E+G LL+ + E+ +++ +G
Sbjct: 43 VQDDLQKNLDATQLYLGEIGFSPLLSAEEEVYFSRKALKG 82
>TIGR_CMR|CPS_1079 [details] [associations]
symbol:CPS_1079 "RNA polymerase sigma factor RpoS"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03087 TIGRFAMs:TIGR02394
OMA:KWLDELN RefSeq:YP_267823.1 ProteinModelPortal:Q487E2 SMR:Q487E2
STRING:Q487E2 GeneID:3519032 KEGG:cps:CPS_1079 PATRIC:21465429
BioCyc:CPSY167879:GI48-1161-MONOMER Uniprot:Q487E2
Length = 296
Score = 502 (181.8 bits), Expect = 2.0e-48, Sum P(2) = 2.0e-48
Identities = 98/240 (40%), Positives = 155/240 (64%)
Query: 388 NRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEY 447
+R + G+ +RK M E+NLRLV+ IA++Y +RGL LDLI+EGN+GL++AV+KF+
Sbjct: 46 SRLALKGDEPSRK---RMIESNLRLVVKIARRYNNRGLPLLDLIEEGNLGLIRAVEKFDP 102
Query: 448 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPS 507
RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N R SR+++Q+ EP
Sbjct: 103 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNIYLRASRELIQKLDHEPTAE 162
Query: 508 VIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMR 567
IA ++ P + K++++ + S+++P + D L D I DE P + M
Sbjct: 163 DIAQHLDRPVADVNKMLRLNERIASVDTPFAGESDKALLDVIADEKSTGPESDLQSEDMS 222
Query: 568 SVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPL 627
+ + LN L ++ +VL RFG+ TLE VG++ +TRER+RQI+ +AL++LR +
Sbjct: 223 NNIIHWLNELNTKQREVLARRFGLLGYEASTLENVGREIGLTRERVRQIQVEALKRLRDI 282
Score = 501 (181.4 bits), Expect = 2.5e-48, Sum P(2) = 2.5e-48
Identities = 98/238 (41%), Positives = 154/238 (64%)
Query: 1178 NRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEY 1237
+R + G+ +RK M E+NLRLV+ IA++Y +RGL LDLI+EGN+GL++AV+KF+
Sbjct: 46 SRLALKGDEPSRK---RMIESNLRLVVKIARRYNNRGLPLLDLIEEGNLGLIRAVEKFDP 102
Query: 1238 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPS 1297
RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N R SR+++Q+ EP
Sbjct: 103 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNIYLRASRELIQKLDHEPTAE 162
Query: 1298 VIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMR 1357
IA ++ P + K++++ + S+++P + D L D I DE P + M
Sbjct: 163 DIAQHLDRPVADVNKMLRLNERIASVDTPFAGESDKALLDVIADEKSTGPESDLQSEDMS 222
Query: 1358 SVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
+ + LN L ++ +VL RFG+ TLE VG++ +TRER+RQI+ +AL++LR
Sbjct: 223 NNIIHWLNELNTKQREVLARRFGLLGYEASTLENVGREIGLTRERVRQIQVEALKRLR 280
Score = 45 (20.9 bits), Expect = 2.0e-48, Sum P(2) = 2.0e-48
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 120 TVDS--DFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEG 160
T++S D D ++Y+ E+G LLT + E+ ++ +G
Sbjct: 10 TIESKEDAPSNLDATQIYLSEIGFSPLLTAEEEVYFSRLALKG 52
Score = 45 (20.9 bits), Expect = 2.5e-48, Sum P(2) = 2.5e-48
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 910 TVDS--DFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEG 950
T++S D D ++Y+ E+G LLT + E+ ++ +G
Sbjct: 10 TIESKEDAPSNLDATQIYLSEIGFSPLLTAEEEVYFSRLALKG 52
>TAIR|locus:2025650 [details] [associations]
symbol:SIG2 "AT1G08540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP;IMP] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IDA;TAS] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0006399 "tRNA metabolic process"
evidence=IMP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0009637 "response to blue light"
evidence=IGI;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010218
"response to far red light" evidence=RCA] [GO:0016117 "carotenoid
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716
EMBL:CP002684 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010114 GO:GO:0009658 EMBL:AC006932 GO:GO:0006399
EMBL:AC003981 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 UniGene:At.23349 HSSP:Q9EZJ8
GO:GO:0001053 EMBL:AB004293 EMBL:AB019943 EMBL:AB004820
EMBL:AF015543 EMBL:Y15362 EMBL:AK118947 EMBL:BT030346
IPI:IPI00546921 PIR:T00707 RefSeq:NP_172330.1
ProteinModelPortal:O22056 SMR:O22056 STRING:O22056 PRIDE:O22056
EnsemblPlants:AT1G08540.1 GeneID:837376 KEGG:ath:AT1G08540
TAIR:At1g08540 InParanoid:O22056 OMA:WIKQAVR PhylomeDB:O22056
ProtClustDB:CLSN2682814 Genevestigator:O22056 InterPro:IPR016262
PIRSF:PIRSF000767 Uniprot:O22056
Length = 572
Score = 463 (168.0 bits), Expect = 4.4e-47, Sum P(4) = 4.4e-47
Identities = 90/236 (38%), Positives = 145/236 (61%)
Query: 1192 KREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 1251
K +M ++N+RLVISIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA WWI
Sbjct: 333 KDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWI 392
Query: 1252 RQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIR 1311
+QA+ +S++DQ+R IR+P HM+E ++ +Q+ ETG P IA + +++
Sbjct: 393 KQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLM 452
Query: 1312 KIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRE 1371
++ K P S++ +G +++ + I D + D + MR + +L+SL RE
Sbjct: 453 AVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTRE 512
Query: 1372 SKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIFL 1427
+V+R RFG+E TL+E+G+ V+RER+RQIE+ A RKL++ R L+ +L
Sbjct: 513 KQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 568
Score = 454 (164.9 bits), Expect = 8.8e-43, Sum P(2) = 8.8e-43
Identities = 87/224 (38%), Positives = 139/224 (62%)
Query: 402 KREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 461
K +M ++N+RLVISIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA WWI
Sbjct: 333 KDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWI 392
Query: 462 RQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIR 521
+QA+ +S++DQ+R IR+P HM+E ++ +Q+ ETG P IA + +++
Sbjct: 393 KQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLM 452
Query: 522 KIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRE 581
++ K P S++ +G +++ + I D + D + MR + +L+SL RE
Sbjct: 453 AVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTRE 512
Query: 582 SKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
+V+R RFG+E TL+E+G+ V+RER+RQIE+ A RKL+
Sbjct: 513 KQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 556
Score = 40 (19.1 bits), Expect = 4.4e-47, Sum P(4) = 4.4e-47
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 920 DPIKMYMREMGSVELLTRDGEIEIAKRIEEGLK 952
DP++ S +LLT E E++ I++ LK
Sbjct: 258 DPLRYLRMTTSSSKLLTVREEHELSAGIQDLLK 290
Score = 40 (19.1 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 130 DPIKMYMREMGSVELLTRDGEIEIAKRIEEGLK 162
DP++ S +LLT E E++ I++ LK
Sbjct: 258 DPLRYLRMTTSSSKLLTVREEHELSAGIQDLLK 290
Score = 38 (18.4 bits), Expect = 4.4e-47, Sum P(4) = 4.4e-47
Identities = 17/68 (25%), Positives = 27/68 (39%)
Query: 93 VLDTETLMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIK--MYMREMGSVELLTRDGE 150
+LD L L + +D D + +S + R P Y+ + S LLT D
Sbjct: 52 MLDVAKLRLPSFDTDSD------SLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEA 105
Query: 151 IEIAKRIE 158
+ +A E
Sbjct: 106 VVVAAAAE 113
Score = 38 (18.4 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 17/68 (25%), Positives = 27/68 (39%)
Query: 883 VLDTETLMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIK--MYMREMGSVELLTRDGE 940
+LD L L + +D D + +S + R P Y+ + S LLT D
Sbjct: 52 MLDVAKLRLPSFDTDSD------SLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEA 105
Query: 941 IEIAKRIE 948
+ +A E
Sbjct: 106 VVVAAAAE 113
Score = 37 (18.1 bits), Expect = 4.4e-47, Sum P(4) = 4.4e-47
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 809 SKKNAFSFDIKSNSREEIENLRKKFKILIKLGKER 843
S K + D++S +EE+E L ++ + + + R
Sbjct: 183 SNKESIG-DLESEKQEEVELLEEQPSVSLAVRSTR 216
>TAIR|locus:2057996 [details] [associations]
symbol:SIGF "AT2G36990" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=TAS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] [GO:0016987 "sigma factor activity" evidence=ISS;IDA]
[GO:0071483 "cellular response to blue light" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP] [GO:0071482 "cellular response to light stimulus"
evidence=IMP] [GO:0090351 "seedling development" evidence=IMP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0009507 GO:GO:0045893
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AC006922
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0090351
eggNOG:COG0568 HSSP:Q9EZJ8 GO:GO:0001053 InterPro:IPR016262
PIRSF:PIRSF000767 GO:GO:0071483 EMBL:AB029916 EMBL:AJ277389
EMBL:AY059768 EMBL:AY091182 EMBL:AJ250812 IPI:IPI00546728
PIR:B84787 PIR:T52653 RefSeq:NP_565856.1 UniGene:At.1453
ProteinModelPortal:Q9LD95 SMR:Q9LD95 IntAct:Q9LD95 STRING:Q9LD95
PaxDb:Q9LD95 PRIDE:Q9LD95 EnsemblPlants:AT2G36990.1 GeneID:818273
KEGG:ath:AT2G36990 GeneFarm:23 TAIR:At2g36990 InParanoid:Q9LD95
OMA:HIAKQYQ PhylomeDB:Q9LD95 ProtClustDB:CLSN2688741
Genevestigator:Q9LD95 Uniprot:Q9LD95
Length = 547
Score = 469 (170.2 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 86/242 (35%), Positives = 157/242 (64%)
Query: 1187 KARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 1246
+ R ++ ++ ANLRLV+ IAK+Y +RGL F DL+QEG++GLMK+V+KF+ + G +F+TY
Sbjct: 303 RGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATY 362
Query: 1247 ATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMP 1306
A WWIRQ+I +SI +RTIR+P ++ + K+S + +QE P +A + +
Sbjct: 363 AYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVS 422
Query: 1307 EEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNS 1366
EK+ K++ + P+SM+ P+ D+D+ + D + P+ + MR+ V+++LN
Sbjct: 423 TEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNV 482
Query: 1367 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIF 1426
L+P+E +++++RFGI+ +L E+G+ + +++ER+RQ+E++AL +L+ + L +
Sbjct: 483 LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542
Query: 1427 LE 1428
+
Sbjct: 543 AD 544
Score = 468 (169.8 bits), Expect = 1.7e-44, Sum P(2) = 1.7e-44
Identities = 85/229 (37%), Positives = 153/229 (66%)
Query: 397 KARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 456
+ R ++ ++ ANLRLV+ IAK+Y +RGL F DL+QEG++GLMK+V+KF+ + G +F+TY
Sbjct: 303 RGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATY 362
Query: 457 ATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMP 516
A WWIRQ+I +SI +RTIR+P ++ + K+S + +QE P +A + +
Sbjct: 363 AYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVS 422
Query: 517 EEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNS 576
EK+ K++ + P+SM+ P+ D+D+ + D + P+ + MR+ V+++LN
Sbjct: 423 TEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNV 482
Query: 577 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
L+P+E +++++RFGI+ +L E+G+ + +++ER+RQ+E++AL +L+
Sbjct: 483 LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLK 531
Score = 42 (19.8 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 130 DPIKMYMREMGSVELLTRDGEIEIAKRIE-----EGLKDMIHAISSCPTTIMEILIAADK 184
D +++++ + +LLT E E+ I+ E +K + + + C TI E A
Sbjct: 233 DALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMG- 291
Query: 185 ISKNEIKID 193
IS +K D
Sbjct: 292 ISSPVLKSD 300
Score = 42 (19.8 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 920 DPIKMYMREMGSVELLTRDGEIEIAKRIE-----EGLKDMIHAISSCPTTIMEILIAADK 974
D +++++ + +LLT E E+ I+ E +K + + + C TI E A
Sbjct: 233 DALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMG- 291
Query: 975 ISKNEIKID 983
IS +K D
Sbjct: 292 ISSPVLKSD 300
>TAIR|locus:2173249 [details] [associations]
symbol:SIG4 "AT5G13730" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=TAS] [GO:0016987 "sigma factor activity" evidence=ISS]
[GO:0071482 "cellular response to light stimulus" evidence=IEP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0016556 "mRNA
modification" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002688
GO:GO:0009507 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AB006704 GO:GO:0071482
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HSSP:Q9EZJ8 GO:GO:0001053 EMBL:AF101075 EMBL:AB021119 EMBL:AY059907
EMBL:AY114689 IPI:IPI00548771 PIR:T51715 RefSeq:NP_196877.1
UniGene:At.43777 UniGene:At.49018 ProteinModelPortal:Q9ZSL6
SMR:Q9ZSL6 STRING:Q9ZSL6 PRIDE:Q9ZSL6 EnsemblPlants:AT5G13730.1
GeneID:831218 KEGG:ath:AT5G13730 GeneFarm:27 TAIR:At5g13730
InParanoid:Q9ZSL6 OMA:PENMVKR PhylomeDB:Q9ZSL6
ProtClustDB:CLSN2687040 Genevestigator:Q9ZSL6 Uniprot:Q9ZSL6
Length = 419
Score = 407 (148.3 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 86/250 (34%), Positives = 143/250 (57%)
Query: 1179 RKMIAGEMKARK--AKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFE 1236
+K A E+ R+ A+ ++T RLV+SIA Y +GL DLIQEG+IGL++ ++F+
Sbjct: 165 KKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFD 224
Query: 1237 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDP 1296
RGYK STY WWI+QAI R+IA ++R +++P M E K++ S + ++ +P
Sbjct: 225 PDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSC 284
Query: 1297 SVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASM 1356
IA + + +R ++ ++ PVS++ + L + + + P + M
Sbjct: 285 EEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHM 344
Query: 1357 RSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 1416
+ ++ +L SLT RES+VL + FG+ + + EE+GK ++RER+RQI AL+KLR+
Sbjct: 345 KHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRN 404
Query: 1417 PSRYYKLKIF 1426
LKI+
Sbjct: 405 VHNVNDLKIY 414
Score = 397 (144.8 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 83/239 (34%), Positives = 138/239 (57%)
Query: 389 RKMIAGEMKARK--AKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFE 446
+K A E+ R+ A+ ++T RLV+SIA Y +GL DLIQEG+IGL++ ++F+
Sbjct: 165 KKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFD 224
Query: 447 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDP 506
RGYK STY WWI+QAI R+IA ++R +++P M E K++ S + ++ +P
Sbjct: 225 PDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSC 284
Query: 507 SVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASM 566
IA + + +R ++ ++ PVS++ + L + + + P + M
Sbjct: 285 EEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHM 344
Query: 567 RSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
+ ++ +L SLT RES+VL + FG+ + + EE+GK ++RER+RQI AL+KLR
Sbjct: 345 KHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLR 403
>UNIPROTKB|Q84LK8 [details] [associations]
symbol:SIG6 "Sig6" species:39947 "Oryza sativa Japonica
Group" [GO:0009536 "plastid" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AP008214 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HSSP:Q9EZJ8 InterPro:IPR016262 PIRSF:PIRSF000767
OMA:HIAKQYQ ProtClustDB:CLSN2688741 EMBL:AB096012 EMBL:AP005249
EMBL:AP005478 EMBL:AK099922 RefSeq:NP_001061343.1 UniGene:Os.27634
STRING:Q84LK8 EnsemblPlants:LOC_Os08g14450.1 GeneID:4345044
KEGG:osa:4345044 HOGENOM:HOG000070749 Uniprot:Q84LK8
Length = 572
Score = 406 (148.0 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 83/240 (34%), Positives = 134/240 (55%)
Query: 1189 RKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 1248
R+ + +M +N RLVI +A+KY GL DL+Q+G GLMK +KF +G +F TYA
Sbjct: 331 RRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAY 390
Query: 1249 WWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEE 1308
WWIRQ+I +SI +R IR+P + + K+ + + + E G +P + +A + + E
Sbjct: 391 WWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIME-GEQPTNANVARRAGITIE 449
Query: 1309 KIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLT 1368
K+ K+ ++P SM+ V DE + ED N+ P + MR V+D L L+
Sbjct: 450 KLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNVEPPDLSVDRMMMRQQVRDFLGILS 509
Query: 1369 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIFLE 1428
PRE +++ RFGI TL +G F +++ERIRQ++ +AL KL+ + ++ +
Sbjct: 510 PREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRSASLQGFDVYFD 569
Score = 404 (147.3 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 83/227 (36%), Positives = 130/227 (57%)
Query: 399 RKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 458
R+ + +M +N RLVI +A+KY GL DL+Q+G GLMK +KF +G +F TYA
Sbjct: 331 RRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAY 390
Query: 459 WWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEE 518
WWIRQ+I +SI +R IR+P + + K+ + + + E G +P + +A + + E
Sbjct: 391 WWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIME-GEQPTNANVARRAGITIE 449
Query: 519 KIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLT 578
K+ K+ ++P SM+ V DE + ED N+ P + MR V+D L L+
Sbjct: 450 KLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNVEPPDLSVDRMMMRQQVRDFLGILS 509
Query: 579 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
PRE +++ RFGI TL +G F +++ERIRQ++ +AL KL+
Sbjct: 510 PREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLK 556
Score = 46 (21.3 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 130 DPIKMYMREMGSVELLTRDGEIEIAKRIE 158
+P K+++R+ + E LT E + +I+
Sbjct: 259 EPFKLFLRDRETTEFLTAKEERHLFSKIQ 287
Score = 46 (21.3 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 920 DPIKMYMREMGSVELLTRDGEIEIAKRIE 948
+P K+++R+ + E LT E + +I+
Sbjct: 259 EPFKLFLRDRETTEFLTAKEERHLFSKIQ 287
>UNIPROTKB|O48655 [details] [associations]
symbol:rsigA "Plastid RNA polymerase sigma factor"
species:39947 "Oryza sativa Japonica Group" [GO:0009416 "response
to light stimulus" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009416
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 EMBL:AB005290 ProteinModelPortal:O48655 STRING:O48655
KEGG:dosa:Os08t0163400-01 Gramene:O48655 Uniprot:O48655
Length = 519
Score = 375 (137.1 bits), Expect = 3.1e-33, Sum P(2) = 3.1e-33
Identities = 86/243 (35%), Positives = 144/243 (59%)
Query: 1193 REM-TEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 1251
REM T +NLRLVISIA+KY + G++ DLIQ G IGL++ ++KF+ RG++ STY WWI
Sbjct: 277 REMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWI 336
Query: 1252 RQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIR 1311
RQ ++R++A+ ++T R+P ++ E + I R ++ L++ G P IA + + E+K+
Sbjct: 337 RQGVSRALAENSKTFRLPTYLHERLIAI-RGAKYELEDQGIAPTIENIAGSLNISEKKVL 395
Query: 1312 KIMKIAKEPVSMESPVGDDEDSHLGD----FIEDENMLA-PSDAALNASMRSVVKDILNS 1366
+ + +S++ + G+ +IED+N+ P ++ V +LNS
Sbjct: 396 NATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNS 455
Query: 1367 -LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKI 1425
L RE ++R+ GI HT E++ +QF ++RER+RQ+ A+ KL+H +R L+
Sbjct: 456 TLNERERDIIRLYHGIGKQC-HTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEA 514
Query: 1426 FLE 1428
LE
Sbjct: 515 LLE 517
Score = 354 (129.7 bits), Expect = 7.8e-30, Sum P(2) = 7.8e-30
Identities = 82/233 (35%), Positives = 138/233 (59%)
Query: 403 REM-TEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 461
REM T +NLRLVISIA+KY + G++ DLIQ G IGL++ ++KF+ RG++ STY WWI
Sbjct: 277 REMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWI 336
Query: 462 RQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIR 521
RQ ++R++A+ ++T R+P ++ E + I R ++ L++ G P IA + + E+K+
Sbjct: 337 RQGVSRALAENSKTFRLPTYLHERLIAI-RGAKYELEDQGIAPTIENIAGSLNISEKKVL 395
Query: 522 KIMKIAKEPVSMESPVGDDEDSHLGD----FIEDENMLA-PSDAALNASMRSVVKDILNS 576
+ + +S++ + G+ +IED+N+ P ++ V +LNS
Sbjct: 396 NATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNS 455
Query: 577 -LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLA 628
L RE ++R+ GI HT E++ +QF ++RER+RQ+ A+ KL+ A
Sbjct: 456 TLNERERDIIRLYHGIGKQC-HTWEDISRQFGLSRERVRQVGLIAMEKLKHAA 507
Score = 48 (22.0 bits), Expect = 3.1e-33, Sum P(2) = 3.1e-33
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 133 KMYMREMGSVELLTRDGEIEIAKRIEEGL 161
++Y+R S ELLT + ++ +I++G+
Sbjct: 205 RIYLRGTVSKELLTHKQVVHLSHKIKDGI 233
Score = 48 (22.0 bits), Expect = 3.1e-33, Sum P(2) = 3.1e-33
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 923 KMYMREMGSVELLTRDGEIEIAKRIEEGL 951
++Y+R S ELLT + ++ +I++G+
Sbjct: 205 RIYLRGTVSKELLTHKQVVHLSHKIKDGI 233
>TAIR|locus:2010871 [details] [associations]
symbol:SIGA "AT1G64860" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0071461 "cellular response to redox state" evidence=IDA]
[GO:0080005 "photosystem stoichiometry adjustment" evidence=IDA]
[GO:0006833 "water transport" evidence=RCA] [GO:0009651 "response
to salt stress" evidence=RCA] [GO:0009750 "response to fructose
stimulus" evidence=RCA] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002684
GO:GO:0009507 GO:GO:0006355 GO:GO:0003677 GO:GO:0071461
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AC006193 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0080005 eggNOG:COG0568 KO:K03086
EMBL:D89993 EMBL:AB019942 EMBL:AB004821 EMBL:AF015542 EMBL:Y14252
EMBL:AF024590 EMBL:AF325036 EMBL:AY062526 EMBL:AY093306
EMBL:AK316773 EMBL:Y14567 IPI:IPI00521776 IPI:IPI00991957
PIR:H96671 PIR:T52642 RefSeq:NP_001185314.1 RefSeq:NP_176666.1
UniGene:At.25556 HSSP:Q9EZJ8 ProteinModelPortal:O24629 SMR:O24629
IntAct:O24629 STRING:O24629 PRIDE:O24629 EnsemblPlants:AT1G64860.1
GeneID:842794 KEGG:ath:AT1G64860 GeneFarm:25 TAIR:At1g64860
InParanoid:O24629 OMA:DHKSRLK ProtClustDB:CLSN2679344
Genevestigator:O24629 GO:GO:0001053 Uniprot:O24629
Length = 502
Score = 365 (133.5 bits), Expect = 7.6e-32, Sum P(2) = 7.6e-32
Identities = 81/251 (32%), Positives = 146/251 (58%)
Query: 1186 MKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 1245
M+ A+ ++ +N+RLV+SIA++Y + G + DL+Q G IGL++ ++KF+ +G++ ST
Sbjct: 254 MECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIST 313
Query: 1246 YATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEM 1305
Y WWIRQ ++R++ D +RT+R+P H+ E + I R ++ LQE G P IA + M
Sbjct: 314 YVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNM 372
Query: 1306 PEEKIR-------KIMKIAKEPV-SMESPVGDDEDSHLGDF-IEDENMLAPSDAALNASM 1356
++K+R K+ + ++ S+ G+ S++ D +E+ D AL
Sbjct: 373 SQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALK--- 429
Query: 1357 RSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 1416
V K I +L RE +++R+ +G++ T E++ K+ ++RER+RQ+ AL KL+H
Sbjct: 430 EEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKH 488
Query: 1417 PSRYYKLKIFL 1427
+R K++ +
Sbjct: 489 AARKRKMEAMI 499
Score = 348 (127.6 bits), Expect = 8.6e-29, Sum P(2) = 8.6e-29
Identities = 79/242 (32%), Positives = 140/242 (57%)
Query: 396 MKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 455
M+ A+ ++ +N+RLV+SIA++Y + G + DL+Q G IGL++ ++KF+ +G++ ST
Sbjct: 254 MECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIST 313
Query: 456 YATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEM 515
Y WWIRQ ++R++ D +RT+R+P H+ E + I R ++ LQE G P IA + M
Sbjct: 314 YVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNM 372
Query: 516 PEEKIR-------KIMKIAKEPV-SMESPVGDDEDSHLGDF-IEDENMLAPSDAALNASM 566
++K+R K+ + ++ S+ G+ S++ D +E+ D AL
Sbjct: 373 SQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALK--- 429
Query: 567 RSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRP 626
V K I +L RE +++R+ +G++ T E++ K+ ++RER+RQ+ AL KL+
Sbjct: 430 EEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKH 488
Query: 627 LA 628
A
Sbjct: 489 AA 490
Score = 42 (19.8 bits), Expect = 7.6e-32, Sum P(2) = 7.6e-32
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 123 SDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGLK 162
SD K ++ Y++ + S ++L+ + ++K+I+ GL+
Sbjct: 179 SDVSSGKQ-VRGYVKGVISEDVLSHVEVVRLSKKIKSGLR 217
Score = 42 (19.8 bits), Expect = 7.6e-32, Sum P(2) = 7.6e-32
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 913 SDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGLK 952
SD K ++ Y++ + S ++L+ + ++K+I+ GL+
Sbjct: 179 SDVSSGKQ-VRGYVKGVISEDVLSHVEVVRLSKKIKSGLR 217
>TAIR|locus:2167413 [details] [associations]
symbol:SIGE "AT5G24120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] [GO:0071483 "cellular response to blue light"
evidence=IEP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0001053 "plastid sigma factor
activity" evidence=IMP] [GO:0010207 "photosystem II assembly"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009637
"response to blue light" evidence=IGI] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0010264
"myo-inositol hexakisphosphate biosynthetic process" evidence=RCA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0005739 EMBL:CP002688 GO:GO:0009507
GO:GO:0045893 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010218 GO:GO:0010114
GO:GO:0009658 EMBL:AB010696 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0010207 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 KO:K03093 EMBL:AB021120 EMBL:Y18550 EMBL:AK316888
EMBL:AY045660 EMBL:AK221445 IPI:IPI00519217 PIR:T51328
RefSeq:NP_197800.1 UniGene:At.5425 ProteinModelPortal:Q9ZNX9
SMR:Q9ZNX9 STRING:Q9ZNX9 PRIDE:Q9ZNX9 EnsemblPlants:AT5G24120.1
GeneID:832477 KEGG:ath:AT5G24120 GeneFarm:28 TAIR:At5g24120
InParanoid:Q9ZNX9 OMA:NKLIKHN PhylomeDB:Q9ZNX9
ProtClustDB:CLSN2686315 Genevestigator:Q9ZNX9 GO:GO:0071483
Uniprot:Q9ZNX9
Length = 517
Score = 348 (127.6 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 83/260 (31%), Positives = 146/260 (56%)
Query: 1176 DINRKMIAGEMK-----ARKAKREMTEANLRLVISIAKKYTDR---GLQFLDLIQEGNIG 1227
+IN M AGE+K R A+ ++ + NLRLV+ + KY G +F DL Q G G
Sbjct: 261 EIN--MTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRG 318
Query: 1228 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQIL 1287
L+ A+D+FE +R ++ STY +WIR AI RS+ T R+P + +I + ++
Sbjct: 319 LITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFT-RVPFGLESVRVEIYKAKTELW 377
Query: 1288 QETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAP 1347
E G P + ++++ E+ R++++ AK +S+ S ++ + I D + +
Sbjct: 378 FEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEEFING-ITDVDGVGA 436
Query: 1348 SDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIE 1407
+++ A +R + D+L+SL P+ES V+R R+G++ D TL E+ +++RE +R+ E
Sbjct: 437 NNSRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHE 496
Query: 1408 AKALRKLRHPSRYYKLKIFL 1427
KAL KL+H +R L+ ++
Sbjct: 497 VKALMKLKHQARVDYLRQYI 516
Score = 341 (125.1 bits), Expect = 7.6e-28, P = 7.6e-28
Identities = 84/258 (32%), Positives = 144/258 (55%)
Query: 386 DINRKMIAGEMK-----ARKAKREMTEANLRLVISIAKKYTDR---GLQFLDLIQEGNIG 437
+IN M AGE+K R A+ ++ + NLRLV+ + KY G +F DL Q G G
Sbjct: 261 EIN--MTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRG 318
Query: 438 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQIL 497
L+ A+D+FE +R ++ STY +WIR AI RS+ T R+P + +I + ++
Sbjct: 319 LITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFT-RVPFGLESVRVEIYKAKTELW 377
Query: 498 QETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAP 557
E G P + ++++ E+ R++++ AK +S+ S ++ + I D + +
Sbjct: 378 FEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEEFING-ITDVDGVGA 436
Query: 558 SDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIE 617
+++ A +R + D+L+SL P+ES V+R R+G++ D TL E+ +++RE +R+ E
Sbjct: 437 NNSRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHE 496
Query: 618 AKALRKLRPLAH-DWLEQ 634
KAL KL+ A D+L Q
Sbjct: 497 VKALMKLKHQARVDYLRQ 514
Score = 43 (20.2 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 494 RQILQET-GSEPDPSVIAIKMEMPEEKIRKIMKIAK 528
+ +LQ++ G EP + IA ++ M +++K ++I +
Sbjct: 242 KDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGR 277
Score = 38 (18.4 bits), Expect = 5.0e-28, Sum P(2) = 5.0e-28
Identities = 35/145 (24%), Positives = 66/145 (45%)
Query: 521 RKIMKIAKEPVSMESPVGDDEDSHLG-DFIEDENMLAPSDAALNASMRSVVKDILNSLTP 579
RK K K+P+S+E LG D+ E L S L+ + ++V+D +
Sbjct: 71 RKPCKTPKKPLSLEH--NSAPSCSLGVDYNEAAARLE-SIYKLSPATTTLVEDDVED-GG 126
Query: 580 RESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAK-ALRKL---RPLAHDW---L 632
++KV R R E + ++V + +V +E+ ++ + AL++ +P+ +
Sbjct: 127 SKAKVSRRRKRKESGEE---KKVVVRNNVKKEKRMSLDKRIALKRNVQEKPVVASVDKKV 183
Query: 633 EQRTHQNEKIIACSSDSSNHNEHVT 657
+R + EKI D S N+ V+
Sbjct: 184 TKRQQEEEKIERLVRDYSASNDIVS 208
>TAIR|locus:2084420 [details] [associations]
symbol:SIGC "AT3G53920" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0019685 "photosynthesis, dark reaction"
evidence=NAS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009507 EMBL:CP002686 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AL132960 GO:GO:0003899 GO:GO:0071482 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 InterPro:IPR016262 PIRSF:PIRSF000767 EMBL:D89994
EMBL:AB019944 EMBL:AB004822 EMBL:AF015544 EMBL:BT030362
EMBL:AY128331 IPI:IPI00530485 PIR:T45932 RefSeq:NP_190960.1
UniGene:At.21270 ProteinModelPortal:O24621 SMR:O24621 STRING:O24621
PRIDE:O24621 EnsemblPlants:AT3G53920.1 GeneID:824559
KEGG:ath:AT3G53920 GeneFarm:26 TAIR:At3g53920 InParanoid:O24621
KO:K03093 OMA:WIRKSMS PhylomeDB:O24621 ProtClustDB:CLSN2685061
Genevestigator:O24621 Uniprot:O24621
Length = 571
Score = 349 (127.9 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 77/235 (32%), Positives = 131/235 (55%)
Query: 1194 EMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 1253
E+ ++ LV+ +A+ Y G+ DLIQ G +G+++ ++F++ RGYKFSTY +WIR+
Sbjct: 335 ELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRK 394
Query: 1254 AITRSIADQARTIRIPVHMIETINKISRISRQILQETGSE-PDPSVIAIKMEMPEEKIRK 1312
+++ ++ AR + IP +I TIN I + + + G + IA +KIR
Sbjct: 395 SMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRA 454
Query: 1313 IMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRES 1372
+ K S++ VGD + +F D M +P +A + S R + D+L L PRE
Sbjct: 455 ANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREK 514
Query: 1373 KVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIFL 1427
+V+ +R+G++ +LEE+GK V++E IR+IE +A+ KLR L+ +L
Sbjct: 515 QVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569
Score = 348 (127.6 bits), Expect = 2.5e-28, P = 2.5e-28
Identities = 78/230 (33%), Positives = 130/230 (56%)
Query: 404 EMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 463
E+ ++ LV+ +A+ Y G+ DLIQ G +G+++ ++F++ RGYKFSTY +WIR+
Sbjct: 335 ELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRK 394
Query: 464 AITRSIADQARTIRIPVHMIETINKISRISRQILQETGSE-PDPSVIAIKMEMPEEKIRK 522
+++ ++ AR + IP +I TIN I + + + G + IA +KIR
Sbjct: 395 SMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRA 454
Query: 523 IMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRES 582
+ K S++ VGD + +F D M +P +A + S R + D+L L PRE
Sbjct: 455 ANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREK 514
Query: 583 KVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR--PLAHD 630
+V+ +R+G++ +LEE+GK V++E IR+IE +A+ KLR P A D
Sbjct: 515 QVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAED 564
Score = 38 (18.4 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 633 EQRTHQNEKIIACSSDSSNHNEHVTNNN 660
E R +QN+ + AC S + + NN
Sbjct: 94 ESRIYQNDSLKACGCASVS--PYTAQNN 119
>UNIPROTKB|Q84JN3 [details] [associations]
symbol:SIG5 "Os05g0586600 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
[GO:0016987 "sigma factor activity" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009536 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 EMBL:AP008211 GO:GO:0016987
GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 KO:K03093 OMA:NKLIKHN ProtClustDB:CLSN2686315
EMBL:AB096011 EMBL:AB096071 RefSeq:NP_001056463.1 UniGene:Os.57417
EnsemblPlants:LOC_Os05g50930.1 GeneID:4339759 KEGG:osa:4339759
Uniprot:Q84JN3
Length = 500
Score = 341 (125.1 bits), Expect = 5.2e-28, P = 5.2e-28
Identities = 85/291 (29%), Positives = 155/291 (53%)
Query: 1146 LCRNIPSIKELQQKLINLQTDIVLPLNDLRDINR-KMIAGEMK-----ARKAKREMTEAN 1199
L R + +K + + NL+ ++ ND + M +M+ R A+ ++ + N
Sbjct: 212 LFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRAARNKLIKHN 271
Query: 1200 LRLVI-SIAKKYTDRGL--QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT 1256
LRLV+ +I K Y D +F D+ Q G GL+ A+D+FE +RG++ STYA +WIR +I
Sbjct: 272 LRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIV 331
Query: 1257 RSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKI 1316
R+I T R P M +I R ++ E G P + K+ + + R ++++
Sbjct: 332 RAITLSNFT-RFPFAMESERQEIHRAREELAFELGRAPTEEEVMKKVGLSPARYRDVVRM 390
Query: 1317 AKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLR 1376
+ S+ + ++ + + + D++ + ++ N +R + D+L+SL P+ES V+R
Sbjct: 391 TRPTYSLHARNRVTQEELINE-VTDDDAIGVDTSSHNTLLRLAIDDLLDSLKPKESVVIR 449
Query: 1377 MRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIFL 1427
RFG++ TL E+ +++RE +R+ E KAL KL+HP+R L+ ++
Sbjct: 450 QRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRRYM 500
Score = 319 (117.4 bits), Expect = 2.1e-25, P = 2.1e-25
Identities = 83/289 (28%), Positives = 152/289 (52%)
Query: 356 LCRNIPSIKELQQKLINLQTDIVLPLNDLRDINR-KMIAGEMK-----ARKAKREMTEAN 409
L R + +K + + NL+ ++ ND + M +M+ R A+ ++ + N
Sbjct: 212 LFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRAARNKLIKHN 271
Query: 410 LRLVI-SIAKKYTDRGL--QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT 466
LRLV+ +I K Y D +F D+ Q G GL+ A+D+FE +RG++ STYA +WIR +I
Sbjct: 272 LRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIV 331
Query: 467 RSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKI 526
R+I T R P M +I R ++ E G P + K+ + + R ++++
Sbjct: 332 RAITLSNFT-RFPFAMESERQEIHRAREELAFELGRAPTEEEVMKKVGLSPARYRDVVRM 390
Query: 527 AKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLR 586
+ S+ + ++ + + + D++ + ++ N +R + D+L+SL P+ES V+R
Sbjct: 391 TRPTYSLHARNRVTQEELINE-VTDDDAIGVDTSSHNTLLRLAIDDLLDSLKPKESVVIR 449
Query: 587 MRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR-PLAHDWLEQ 634
RFG++ TL E+ +++RE +R+ E KAL KL+ P ++L +
Sbjct: 450 QRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRR 498
>TIGR_CMR|SPO_1409 [details] [associations]
symbol:SPO_1409 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_166650.1 ProteinModelPortal:Q5LTK5
GeneID:3195142 KEGG:sil:SPO1409 PATRIC:23376133 OMA:HESQEEM
Uniprot:Q5LTK5
Length = 298
Score = 247 (92.0 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 72/246 (29%), Positives = 126/246 (51%)
Query: 1185 EMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 1244
E A A + +T ++LRL IA Y GL ++I E N+GLM+AV +F+ +G++ +
Sbjct: 44 EQDAESAHKMVT-SHLRLAAKIAMGYRGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLA 102
Query: 1245 TYATWWIRQAITRSIADQARTIRIPVHMIET--INKISRISRQI--LQETGSEPDPSV-I 1299
TYA WWIR AI I +++ + + + +I L+E P+ I
Sbjct: 103 TYAMWWIRAAIQEYILRSWSLVKLGTTSAQKKLFFNLRKAKAKIGALEEGDLRPENVARI 162
Query: 1300 AIKMEMPEEKIRKI-MKIAKEPVSMESPVGDDEDSHLG--DFIEDENMLAPSDAALNASM 1356
A + + E+ + + +++ S+ + VG + + + D++EDE+ +D +
Sbjct: 163 AHDLGVSEDDVISMNRRMSGGDASLNATVGSEGEGTMQWQDWLEDEDADQAADYEARDEL 222
Query: 1357 ---RSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRK 1413
R ++ L+ L RE VL R ++ + TLE++ Q++V+RERIRQIE +A K
Sbjct: 223 EARRELLASALDVLNEREKDVLTQRRLLDQTV--TLEDLSAQYNVSRERIRQIEVRAFEK 280
Query: 1414 LRHPSR 1419
L+ R
Sbjct: 281 LQKRMR 286
Score = 246 (91.7 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 71/242 (29%), Positives = 125/242 (51%)
Query: 395 EMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 454
E A A + +T ++LRL IA Y GL ++I E N+GLM+AV +F+ +G++ +
Sbjct: 44 EQDAESAHKMVT-SHLRLAAKIAMGYRGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLA 102
Query: 455 TYATWWIRQAITRSIADQARTIRIPVHMIET--INKISRISRQI--LQETGSEPDPSV-I 509
TYA WWIR AI I +++ + + + +I L+E P+ I
Sbjct: 103 TYAMWWIRAAIQEYILRSWSLVKLGTTSAQKKLFFNLRKAKAKIGALEEGDLRPENVARI 162
Query: 510 AIKMEMPEEKIRKI-MKIAKEPVSMESPVGDDEDSHLG--DFIEDENMLAPSDAALNASM 566
A + + E+ + + +++ S+ + VG + + + D++EDE+ +D +
Sbjct: 163 AHDLGVSEDDVISMNRRMSGGDASLNATVGSEGEGTMQWQDWLEDEDADQAADYEARDEL 222
Query: 567 ---RSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRK 623
R ++ L+ L RE VL R ++ + TLE++ Q++V+RERIRQIE +A K
Sbjct: 223 EARRELLASALDVLNEREKDVLTQRRLLDQTV--TLEDLSAQYNVSRERIRQIEVRAFEK 280
Query: 624 LR 625
L+
Sbjct: 281 LQ 282
Score = 44 (20.5 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 132 IKMYMREMGSVELLTRDGEIEIAKR-IEEGLKDMIH 166
+ YM+E+ LL + E +AKR +EE + H
Sbjct: 16 LNRYMQEIRKFPLLEPEEEYMLAKRWVEEQDAESAH 51
Score = 44 (20.5 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 922 IKMYMREMGSVELLTRDGEIEIAKR-IEEGLKDMIH 956
+ YM+E+ LL + E +AKR +EE + H
Sbjct: 16 LNRYMQEIRKFPLLEPEEEYMLAKRWVEEQDAESAH 51
>TIGR_CMR|CHY_2055 [details] [associations]
symbol:CHY_2055 "RNA polymerase sigma-G factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014212 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 RefSeq:YP_360874.1
ProteinModelPortal:Q3AAG0 STRING:Q3AAG0 GeneID:3726360
KEGG:chy:CHY_2055 PATRIC:21277191 OMA:QISDERN ProtClustDB:PRK08215
BioCyc:CHYD246194:GJCN-2054-MONOMER TIGRFAMs:TIGR02850
Uniprot:Q3AAG0
Length = 257
Score = 262 (97.3 bits), Expect = 3.7e-21, P = 3.7e-21
Identities = 72/248 (29%), Positives = 130/248 (52%)
Query: 378 VLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIG 437
VL +++ + K+ G+M+AR+ ++ NLRLV+SI +++T+RG DL Q G IG
Sbjct: 18 VLTNQEMKKLFLKVKEGDMEARQ---KLISGNLRLVLSIIQRFTNRGEYVDDLFQVGCIG 74
Query: 438 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQIL 497
L+KA+D F+ + KFSTYA I I R + D IR+ + + K ++ ++
Sbjct: 75 LIKAIDNFDLEQNVKFSTYAVPMIIGEIRRYLRDN-NPIRVSRSLRDVAYKALQVRDNLV 133
Query: 498 QETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAP 557
EP S IA ++++P+E++ + ++PVS+ P+ D + F+ D+ +
Sbjct: 134 GRFSREPTVSEIAQELKVPQEEVVFALDAIQDPVSLFEPIYQDGGDPI--FVMDQ-IKDE 190
Query: 558 SDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIE 617
+ N +K+ L L RE +L++RF T EV ++ +++ ++ ++E
Sbjct: 191 KNTDHNWLQGIALKEALERLNERERLILKLRF----YEGKTQMEVAEEIGISQAQVSRLE 246
Query: 618 AKALRKLR 625
AL LR
Sbjct: 247 KAALNHLR 254
Score = 262 (97.3 bits), Expect = 3.7e-21, P = 3.7e-21
Identities = 72/248 (29%), Positives = 130/248 (52%)
Query: 1168 VLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIG 1227
VL +++ + K+ G+M+AR+ ++ NLRLV+SI +++T+RG DL Q G IG
Sbjct: 18 VLTNQEMKKLFLKVKEGDMEARQ---KLISGNLRLVLSIIQRFTNRGEYVDDLFQVGCIG 74
Query: 1228 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQIL 1287
L+KA+D F+ + KFSTYA I I R + D IR+ + + K ++ ++
Sbjct: 75 LIKAIDNFDLEQNVKFSTYAVPMIIGEIRRYLRDN-NPIRVSRSLRDVAYKALQVRDNLV 133
Query: 1288 QETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAP 1347
EP S IA ++++P+E++ + ++PVS+ P+ D + F+ D+ +
Sbjct: 134 GRFSREPTVSEIAQELKVPQEEVVFALDAIQDPVSLFEPIYQDGGDPI--FVMDQ-IKDE 190
Query: 1348 SDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIE 1407
+ N +K+ L L RE +L++RF T EV ++ +++ ++ ++E
Sbjct: 191 KNTDHNWLQGIALKEALERLNERERLILKLRF----YEGKTQMEVAEEIGISQAQVSRLE 246
Query: 1408 AKALRKLR 1415
AL LR
Sbjct: 247 KAALNHLR 254
>TIGR_CMR|GSU_0655 [details] [associations]
symbol:GSU_0655 "RNA polymerase sigma-32 factor"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
TIGRFAMs:TIGR02392 RefSeq:NP_951712.1 ProteinModelPortal:Q74FF4
GeneID:2685542 KEGG:gsu:GSU0655 PATRIC:22024067 OMA:DIVSARW
ProtClustDB:CLSK827976 BioCyc:GSUL243231:GH27-665-MONOMER
Uniprot:Q74FF4
Length = 284
Score = 262 (97.3 bits), Expect = 3.7e-21, P = 3.7e-21
Identities = 68/236 (28%), Positives = 119/236 (50%)
Query: 395 EMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 454
E K +A + +NLR V+ IA +Y GL+ LDLIQEGN+GLM AV KF +G +
Sbjct: 39 EDKDLEAAHSLITSNLRFVVKIAAEYRSYGLKMLDLIQEGNVGLMMAVRKFNPYKGIRLI 98
Query: 455 TYATWWIRQAITRSIADQARTIRIPVHMIET--INKISRISRQILQETGSEPDPSVIAIK 512
+YA WWIR I I ++I + K+++ I TG++ D A
Sbjct: 99 SYAVWWIRAYIQNHIISAWSLLKIGTTQAQKKLFFKLNQAKNAIKGLTGTD-DIEATATS 157
Query: 513 MEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAA-LNAS--MRSV 569
+ + E ++ ++ + + +++ + + + + + + DE A L S ++
Sbjct: 158 LHVKESEVLEMDQRMRGDFYLDAEIKNGDGLTILETLADERQNQEDTLAELQESELLKQH 217
Query: 570 VKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
+ L L +E ++ R + + TL+E+ +F ++RER+RQIE ALRK++
Sbjct: 218 IAGALGKLNEKERFIVEQR--VTADTPLTLQEIADRFSISRERVRQIEEAALRKIK 271
Score = 262 (97.3 bits), Expect = 3.7e-21, P = 3.7e-21
Identities = 68/236 (28%), Positives = 119/236 (50%)
Query: 1185 EMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 1244
E K +A + +NLR V+ IA +Y GL+ LDLIQEGN+GLM AV KF +G +
Sbjct: 39 EDKDLEAAHSLITSNLRFVVKIAAEYRSYGLKMLDLIQEGNVGLMMAVRKFNPYKGIRLI 98
Query: 1245 TYATWWIRQAITRSIADQARTIRIPVHMIET--INKISRISRQILQETGSEPDPSVIAIK 1302
+YA WWIR I I ++I + K+++ I TG++ D A
Sbjct: 99 SYAVWWIRAYIQNHIISAWSLLKIGTTQAQKKLFFKLNQAKNAIKGLTGTD-DIEATATS 157
Query: 1303 MEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAA-LNAS--MRSV 1359
+ + E ++ ++ + + +++ + + + + + + DE A L S ++
Sbjct: 158 LHVKESEVLEMDQRMRGDFYLDAEIKNGDGLTILETLADERQNQEDTLAELQESELLKQH 217
Query: 1360 VKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
+ L L +E ++ R + + TL+E+ +F ++RER+RQIE ALRK++
Sbjct: 218 IAGALGKLNEKERFIVEQR--VTADTPLTLQEIADRFSISRERVRQIEEAALRKIK 271
>TIGR_CMR|BA_4042 [details] [associations]
symbol:BA_4042 "RNA polymerase sigma-G factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014212 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HSSP:P00579 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
OMA:QISDERN ProtClustDB:PRK08215 TIGRFAMs:TIGR02850
RefSeq:NP_846282.1 RefSeq:YP_020684.2 ProteinModelPortal:Q81WD6
DNASU:1086511 EnsemblBacteria:EBBACT00000008607
EnsemblBacteria:EBBACT00000015378 GeneID:1086511 GeneID:2816830
KEGG:ban:BA_4042 KEGG:bar:GBAA_4042 PATRIC:18785676
BioCyc:BANT261594:GJ7F-3930-MONOMER Uniprot:Q81WD6
Length = 259
Score = 254 (94.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 70/249 (28%), Positives = 130/249 (52%)
Query: 378 VLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIG 437
VL +++R + R+M +GE+ AR+ ++ NLRLV+S+ +++ +RG DL Q G IG
Sbjct: 18 VLKNDEMRKLFREMQSGEISARE---KLVNGNLRLVLSVIQRFNNRGEYVDDLFQVGCIG 74
Query: 438 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQIL 497
LMK++D F+ + KFSTYA I I R + D IR+ + + K ++ +++
Sbjct: 75 LMKSIDNFDLGQNVKFSTYAVPMIIGEIRRYLRDN-NPIRVSRSLRDIAYKALQVREKLI 133
Query: 498 QETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDD--EDSHLGDFIEDENML 555
E EP IA +E+ E+I + ++PVS+ P+ +D + + D + DE
Sbjct: 134 AENSKEPTAMDIAKVLEVTHEEIVFALDAIQDPVSLFEPIYNDGGDPIFVMDQLSDEKQ- 192
Query: 556 APSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQ 615
D + +K+ + L RE ++R RF T EV ++ +++ ++ +
Sbjct: 193 --KDEQWVEEL--ALKEGMKRLNDREKMIIRKRF----FQGKTQMEVAEEIGISQAQVSR 244
Query: 616 IEAKALRKL 624
+E A++++
Sbjct: 245 LEKSAIKQM 253
Score = 254 (94.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 70/249 (28%), Positives = 130/249 (52%)
Query: 1168 VLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIG 1227
VL +++R + R+M +GE+ AR+ ++ NLRLV+S+ +++ +RG DL Q G IG
Sbjct: 18 VLKNDEMRKLFREMQSGEISARE---KLVNGNLRLVLSVIQRFNNRGEYVDDLFQVGCIG 74
Query: 1228 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQIL 1287
LMK++D F+ + KFSTYA I I R + D IR+ + + K ++ +++
Sbjct: 75 LMKSIDNFDLGQNVKFSTYAVPMIIGEIRRYLRDN-NPIRVSRSLRDIAYKALQVREKLI 133
Query: 1288 QETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDD--EDSHLGDFIEDENML 1345
E EP IA +E+ E+I + ++PVS+ P+ +D + + D + DE
Sbjct: 134 AENSKEPTAMDIAKVLEVTHEEIVFALDAIQDPVSLFEPIYNDGGDPIFVMDQLSDEKQ- 192
Query: 1346 APSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQ 1405
D + +K+ + L RE ++R RF T EV ++ +++ ++ +
Sbjct: 193 --KDEQWVEEL--ALKEGMKRLNDREKMIIRKRF----FQGKTQMEVAEEIGISQAQVSR 244
Query: 1406 IEAKALRKL 1414
+E A++++
Sbjct: 245 LEKSAIKQM 253
>UNIPROTKB|P50511 [details] [associations]
symbol:rpoH "RNA polymerase sigma-32 factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 EMBL:U44432 PIR:D82357 RefSeq:NP_229808.1
ProteinModelPortal:P50511 DNASU:2614865 GeneID:2614865
KEGG:vch:VC0150 PATRIC:20079338 OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 228 (85.3 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 69/259 (26%), Positives = 136/259 (52%)
Query: 378 VLPLNDLRDINRKM-IAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNI 436
+L ++ R++ ++ G++ A K + ++LR V+ +A+ Y+ GL DL+QEGNI
Sbjct: 28 MLSADEERELAERLHYKGDIDAAKG---LILSHLRFVVHVARGYSGYGLPMADLVQEGNI 84
Query: 437 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQI 496
GLMKAV +F G + ++A WI+ I + R ++I + K+ R+
Sbjct: 85 GLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQ--RKLFFNLRKS 142
Query: 497 LQETG--SEPDPSVIAIKMEMPEEKIRKI-MKIAKEPVSMESPVGDDED--SHLGD--FI 549
+ G + + +A ++ + ++R++ ++A + + E DDE+ ++ ++
Sbjct: 143 KKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYL 202
Query: 550 EDENM-LAPSDAALN--ASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQF 606
ED++ LA + A N A + L SL R ++R R+ ++ + TL+++ + +
Sbjct: 203 EDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMY 261
Query: 607 DVTRERIRQIEAKALRKLR 625
V+ ERIRQ+E A+RKL+
Sbjct: 262 GVSAERIRQLEKNAMRKLK 280
Score = 228 (85.3 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 69/259 (26%), Positives = 136/259 (52%)
Query: 1168 VLPLNDLRDINRKM-IAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNI 1226
+L ++ R++ ++ G++ A K + ++LR V+ +A+ Y+ GL DL+QEGNI
Sbjct: 28 MLSADEERELAERLHYKGDIDAAKG---LILSHLRFVVHVARGYSGYGLPMADLVQEGNI 84
Query: 1227 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQI 1286
GLMKAV +F G + ++A WI+ I + R ++I + K+ R+
Sbjct: 85 GLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQ--RKLFFNLRKS 142
Query: 1287 LQETG--SEPDPSVIAIKMEMPEEKIRKI-MKIAKEPVSMESPVGDDED--SHLGD--FI 1339
+ G + + +A ++ + ++R++ ++A + + E DDE+ ++ ++
Sbjct: 143 KKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYL 202
Query: 1340 EDENM-LAPSDAALN--ASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQF 1396
ED++ LA + A N A + L SL R ++R R+ ++ + TL+++ + +
Sbjct: 203 EDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMY 261
Query: 1397 DVTRERIRQIEAKALRKLR 1415
V+ ERIRQ+E A+RKL+
Sbjct: 262 GVSAERIRQLEKNAMRKLK 280
Score = 50 (22.7 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 128 TKDPIKMYMREMGSVELLTRDGEIEIAKRI 157
++D + Y+R + +L+ D E E+A+R+
Sbjct: 12 SQDSLDSYIRSVNGYPMLSADEERELAERL 41
Score = 50 (22.7 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 918 TKDPIKMYMREMGSVELLTRDGEIEIAKRI 947
++D + Y+R + +L+ D E E+A+R+
Sbjct: 12 SQDSLDSYIRSVNGYPMLSADEERELAERL 41
>TIGR_CMR|VC_0150 [details] [associations]
symbol:VC_0150 "RNA polymerase sigma-32 factor" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03089 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 EMBL:U44432
PIR:D82357 RefSeq:NP_229808.1 ProteinModelPortal:P50511
DNASU:2614865 GeneID:2614865 KEGG:vch:VC0150 PATRIC:20079338
OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 228 (85.3 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 69/259 (26%), Positives = 136/259 (52%)
Query: 378 VLPLNDLRDINRKM-IAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNI 436
+L ++ R++ ++ G++ A K + ++LR V+ +A+ Y+ GL DL+QEGNI
Sbjct: 28 MLSADEERELAERLHYKGDIDAAKG---LILSHLRFVVHVARGYSGYGLPMADLVQEGNI 84
Query: 437 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQI 496
GLMKAV +F G + ++A WI+ I + R ++I + K+ R+
Sbjct: 85 GLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQ--RKLFFNLRKS 142
Query: 497 LQETG--SEPDPSVIAIKMEMPEEKIRKI-MKIAKEPVSMESPVGDDED--SHLGD--FI 549
+ G + + +A ++ + ++R++ ++A + + E DDE+ ++ ++
Sbjct: 143 KKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYL 202
Query: 550 EDENM-LAPSDAALN--ASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQF 606
ED++ LA + A N A + L SL R ++R R+ ++ + TL+++ + +
Sbjct: 203 EDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMY 261
Query: 607 DVTRERIRQIEAKALRKLR 625
V+ ERIRQ+E A+RKL+
Sbjct: 262 GVSAERIRQLEKNAMRKLK 280
Score = 228 (85.3 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 69/259 (26%), Positives = 136/259 (52%)
Query: 1168 VLPLNDLRDINRKM-IAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNI 1226
+L ++ R++ ++ G++ A K + ++LR V+ +A+ Y+ GL DL+QEGNI
Sbjct: 28 MLSADEERELAERLHYKGDIDAAKG---LILSHLRFVVHVARGYSGYGLPMADLVQEGNI 84
Query: 1227 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQI 1286
GLMKAV +F G + ++A WI+ I + R ++I + K+ R+
Sbjct: 85 GLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQ--RKLFFNLRKS 142
Query: 1287 LQETG--SEPDPSVIAIKMEMPEEKIRKI-MKIAKEPVSMESPVGDDED--SHLGD--FI 1339
+ G + + +A ++ + ++R++ ++A + + E DDE+ ++ ++
Sbjct: 143 KKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYL 202
Query: 1340 EDENM-LAPSDAALN--ASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQF 1396
ED++ LA + A N A + L SL R ++R R+ ++ + TL+++ + +
Sbjct: 203 EDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMY 261
Query: 1397 DVTRERIRQIEAKALRKLR 1415
V+ ERIRQ+E A+RKL+
Sbjct: 262 GVSAERIRQLEKNAMRKLK 280
Score = 50 (22.7 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 128 TKDPIKMYMREMGSVELLTRDGEIEIAKRI 157
++D + Y+R + +L+ D E E+A+R+
Sbjct: 12 SQDSLDSYIRSVNGYPMLSADEERELAERL 41
Score = 50 (22.7 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 918 TKDPIKMYMREMGSVELLTRDGEIEIAKRI 947
++D + Y+R + +L+ D E E+A+R+
Sbjct: 12 SQDSLDSYIRSVNGYPMLSADEERELAERL 41
>TIGR_CMR|APH_0759 [details] [associations]
symbol:APH_0759 "RNA polymerase sigma-32 factor"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:CLSK749586 RefSeq:YP_505338.1 ProteinModelPortal:Q2GJW3
STRING:Q2GJW3 GeneID:3930206 KEGG:aph:APH_0759 PATRIC:20950212
OMA:ADTHRET BioCyc:APHA212042:GHPM-775-MONOMER Uniprot:Q2GJW3
Length = 289
Score = 244 (91.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 70/233 (30%), Positives = 121/233 (51%)
Query: 404 EMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 463
++ ++LRLV+ +A + GL ++LI EGNIGLM+AV KF G++ STYA WWI+
Sbjct: 50 KLVTSHLRLVVKVAMGFRSYGLPLMELIMEGNIGLMQAVKKFNPELGFRLSTYAIWWIKA 109
Query: 464 AITRSIADQARTIRIPVHMIET--INKISRISRQIL--QETGSEPDPSVIAIKMEMPEEK 519
+I I +RI + + +I R+IL + S+ D IA + E++
Sbjct: 110 SIKDYILRSWSCMRIGTTQAQKKLFFSLRKIKRRILGCSASASQSDIRAIAEECGTSEKE 169
Query: 520 IRKIMKI-AKEPVSMESPVGDDEDSHLGDFI-----EDENM-LAPSDAALNASMRSVVKD 572
+ + + + +S+ V + + L D I E M L+ ++ + M VK+
Sbjct: 170 VESMDRFFSNRDISLSDKVCCESGTELQDLIPCSSPNQEVMYLSHEESVMKDQM---VKE 226
Query: 573 ILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
L++L R + R ++ D TLE + +++ V++ERIRQIE ++ K+R
Sbjct: 227 ALSTLDERHRDIFSRR-KLKEHPD-TLETLSEEYGVSKERIRQIELQSFSKVR 277
Score = 244 (91.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 70/233 (30%), Positives = 121/233 (51%)
Query: 1194 EMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 1253
++ ++LRLV+ +A + GL ++LI EGNIGLM+AV KF G++ STYA WWI+
Sbjct: 50 KLVTSHLRLVVKVAMGFRSYGLPLMELIMEGNIGLMQAVKKFNPELGFRLSTYAIWWIKA 109
Query: 1254 AITRSIADQARTIRIPVHMIET--INKISRISRQIL--QETGSEPDPSVIAIKMEMPEEK 1309
+I I +RI + + +I R+IL + S+ D IA + E++
Sbjct: 110 SIKDYILRSWSCMRIGTTQAQKKLFFSLRKIKRRILGCSASASQSDIRAIAEECGTSEKE 169
Query: 1310 IRKIMKI-AKEPVSMESPVGDDEDSHLGDFI-----EDENM-LAPSDAALNASMRSVVKD 1362
+ + + + +S+ V + + L D I E M L+ ++ + M VK+
Sbjct: 170 VESMDRFFSNRDISLSDKVCCESGTELQDLIPCSSPNQEVMYLSHEESVMKDQM---VKE 226
Query: 1363 ILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
L++L R + R ++ D TLE + +++ V++ERIRQIE ++ K+R
Sbjct: 227 ALSTLDERHRDIFSRR-KLKEHPD-TLETLSEEYGVSKERIRQIELQSFSKVR 277
>UNIPROTKB|O32728 [details] [associations]
symbol:O32728 "RNA polymerase sigma factor" species:1422
"Geobacillus stearothermophilus" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
TIGRFAMs:TIGR02980 EMBL:L47360 PDB:1L0O PDBsum:1L0O
ProteinModelPortal:O32728 SMR:O32728 IntAct:O32728
EvolutionaryTrace:O32728 TIGRFAMs:TIGR02885 Uniprot:O32728
Length = 250
Score = 232 (86.7 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 68/248 (27%), Positives = 128/248 (51%)
Query: 380 PLND--LRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIG 437
P+ D ++++ R+ G+ +AR E+ E N+RLV S+ +++ +RG + DL Q G IG
Sbjct: 11 PIKDQEMKELIRRSQEGDQEARD---EIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIG 67
Query: 438 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQIL 497
L+K+VDKF+ KFSTYA I I R + D T+++ + E NKI + ++
Sbjct: 68 LLKSVDKFDLSYDVKFSTYAVPMIIGEIQRFLRDDG-TVKVSRSLKEMGNKIRKAKDELS 126
Query: 498 QETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAP 557
+ G P + IA + + E + + + P S+ V +++ GD I + +A
Sbjct: 127 KTRGRSPTITEIADHLGISPEDVVLAQEAVRLPTSIHETVYEND----GDPITLLDQIAD 182
Query: 558 SDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIE 617
+D A + + +K + L RE ++ +R+ D T EV + +++ ++ ++E
Sbjct: 183 ADEA-SWFDKIALKKAIEELDERERLIVYLRY----YRDRTQSEVASRLGISQVQVSRLE 237
Query: 618 AKALRKLR 625
K L+ ++
Sbjct: 238 KKILQHIK 245
Score = 232 (86.7 bits), Expect = 5.9e-18, P = 5.9e-18
Identities = 68/248 (27%), Positives = 128/248 (51%)
Query: 1170 PLND--LRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIG 1227
P+ D ++++ R+ G+ +AR E+ E N+RLV S+ +++ +RG + DL Q G IG
Sbjct: 11 PIKDQEMKELIRRSQEGDQEARD---EIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIG 67
Query: 1228 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQIL 1287
L+K+VDKF+ KFSTYA I I R + D T+++ + E NKI + ++
Sbjct: 68 LLKSVDKFDLSYDVKFSTYAVPMIIGEIQRFLRDDG-TVKVSRSLKEMGNKIRKAKDELS 126
Query: 1288 QETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAP 1347
+ G P + IA + + E + + + P S+ V +++ GD I + +A
Sbjct: 127 KTRGRSPTITEIADHLGISPEDVVLAQEAVRLPTSIHETVYEND----GDPITLLDQIAD 182
Query: 1348 SDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIE 1407
+D A + + +K + L RE ++ +R+ D T EV + +++ ++ ++E
Sbjct: 183 ADEA-SWFDKIALKKAIEELDERERLIVYLRY----YRDRTQSEVASRLGISQVQVSRLE 237
Query: 1408 AKALRKLR 1415
K L+ ++
Sbjct: 238 KKILQHIK 245
Score = 38 (18.4 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 7/16 (43%), Positives = 14/16 (87%)
Query: 1095 QVTQIEKQILEIVVNK 1110
QV+++EK+IL+ + +K
Sbjct: 232 QVSRLEKKILQHIKDK 247
>TIGR_CMR|SO_4583 [details] [associations]
symbol:SO_4583 "RNA polymerase sigma-32 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 HSSP:Q9EZJ8 OMA:EIAYAER
RefSeq:NP_720099.1 ProteinModelPortal:Q8E8S8 GeneID:1172168
KEGG:son:SO_4583 PATRIC:23528833 Uniprot:Q8E8S8
Length = 285
Score = 215 (80.7 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 66/235 (28%), Positives = 121/235 (51%)
Query: 400 KAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 459
+A +++ ++LR V+ +AK Y GL DLIQEGNIGLMKAV +F+ G + ++A
Sbjct: 51 QAAKQLIMSHLRFVVHVAKGYAGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVH 110
Query: 460 WIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETG--SEPDPSVIAIKMEMPE 517
WI+ I + R +++ + K+ R+ G S+ + +++A + + +
Sbjct: 111 WIKAEIHEYVLKNWRIVKVATTKAQ--RKLFFNIRKAKTRLGWFSDDEVTMVAENLGVSK 168
Query: 518 EKIRKIMK--IAKEPVSMESPVGDDE-DSHLGDFIEDENM-LAPSDAALN--ASMRSVVK 571
+ ++ A++P S DDE D ++ED + LA + N ++ + +
Sbjct: 169 ADVTEMESRMAAQDPAFDLSSDNDDEHDFAPVHYLEDHSSDLAENIENDNWESNAQGRLL 228
Query: 572 DILNSLTPRESKVLRMRFGIEMSSDHT-LEEVGKQFDVTRERIRQIEAKALRKLR 625
+ +L R +LR R+ + D T L+E+ + + V+ ERIRQ+E A+ KL+
Sbjct: 229 SAIKTLDERSQHILRARW---LDDDKTTLQELAETYQVSAERIRQLEKNAMNKLK 280
Score = 215 (80.7 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 66/235 (28%), Positives = 121/235 (51%)
Query: 1190 KAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 1249
+A +++ ++LR V+ +AK Y GL DLIQEGNIGLMKAV +F+ G + ++A
Sbjct: 51 QAAKQLIMSHLRFVVHVAKGYAGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVH 110
Query: 1250 WIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETG--SEPDPSVIAIKMEMPE 1307
WI+ I + R +++ + K+ R+ G S+ + +++A + + +
Sbjct: 111 WIKAEIHEYVLKNWRIVKVATTKAQ--RKLFFNIRKAKTRLGWFSDDEVTMVAENLGVSK 168
Query: 1308 EKIRKIMK--IAKEPVSMESPVGDDE-DSHLGDFIEDENM-LAPSDAALN--ASMRSVVK 1361
+ ++ A++P S DDE D ++ED + LA + N ++ + +
Sbjct: 169 ADVTEMESRMAAQDPAFDLSSDNDDEHDFAPVHYLEDHSSDLAENIENDNWESNAQGRLL 228
Query: 1362 DILNSLTPRESKVLRMRFGIEMSSDHT-LEEVGKQFDVTRERIRQIEAKALRKLR 1415
+ +L R +LR R+ + D T L+E+ + + V+ ERIRQ+E A+ KL+
Sbjct: 229 SAIKTLDERSQHILRARW---LDDDKTTLQELAETYQVSAERIRQLEKNAMNKLK 280
Score = 52 (23.4 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 132 IKMYMREMGSVELLTRDGEIEIAKRIEE 159
++ Y+ + S+ +L + E E+AKR++E
Sbjct: 19 LEAYIHSVTSMNMLDAETEYELAKRLQE 46
Score = 52 (23.4 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 922 IKMYMREMGSVELLTRDGEIEIAKRIEE 949
++ Y+ + S+ +L + E E+AKR++E
Sbjct: 19 LEAYIHSVTSMNMLDAETEYELAKRLQE 46
>TIGR_CMR|NSE_0341 [details] [associations]
symbol:NSE_0341 "RNA polymerase sigma-32 factor"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_506230.1 STRING:Q2GE66
GeneID:3931426 KEGG:nse:NSE_0341 PATRIC:22680769 OMA:AINEYVI
ProtClustDB:CLSK2528041 BioCyc:NSEN222891:GHFU-366-MONOMER
Uniprot:Q2GE66
Length = 288
Score = 236 (88.1 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 65/234 (27%), Positives = 119/234 (50%)
Query: 401 AKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 460
A + + EA LRLV+ + ++ + G +DL EGNIGLMKA+ F G+ +TYA WW
Sbjct: 46 AAQRLVEAYLRLVVKVTVRFRNYGFPLMDLASEGNIGLMKAIKNFNPTLGHGIATYAIWW 105
Query: 461 IRQAITRSIADQARTIRIPV-----HMIETINKISRISRQI-LQETGSEPDPSVIAIKME 514
I+ AI + ++I + + K+ L E S I +
Sbjct: 106 IKAAINEYVIRSWSMVKIGTTAAQRRLFFNLRKLKNSGSVAGLDENQVVKRISEILAVSK 165
Query: 515 MPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIE--DENMLAPSDAALNASMRS-VVK 571
E++ +I+ A++ VS+ +G+D+ S + D + + N A M+S ++
Sbjct: 166 NDVEEMERILN-ARD-VSLNMQLGEDDSSEVHDLVPFPEANQEAVLLETQERQMKSQLLY 223
Query: 572 DILNSLTPRESKVLRMRFGIEMSS-DHTLEEVGKQFDVTRERIRQIEAKALRKL 624
+ + +L R ++ R +S+ TL+E+G++F +++ER+RQI A+A++K+
Sbjct: 224 EAVEALEARHKEIFVAR---SLSAVPRTLKELGEKFSISQERVRQIHARAMKKV 274
Score = 236 (88.1 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 65/234 (27%), Positives = 119/234 (50%)
Query: 1191 AKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 1250
A + + EA LRLV+ + ++ + G +DL EGNIGLMKA+ F G+ +TYA WW
Sbjct: 46 AAQRLVEAYLRLVVKVTVRFRNYGFPLMDLASEGNIGLMKAIKNFNPTLGHGIATYAIWW 105
Query: 1251 IRQAITRSIADQARTIRIPV-----HMIETINKISRISRQI-LQETGSEPDPSVIAIKME 1304
I+ AI + ++I + + K+ L E S I +
Sbjct: 106 IKAAINEYVIRSWSMVKIGTTAAQRRLFFNLRKLKNSGSVAGLDENQVVKRISEILAVSK 165
Query: 1305 MPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIE--DENMLAPSDAALNASMRS-VVK 1361
E++ +I+ A++ VS+ +G+D+ S + D + + N A M+S ++
Sbjct: 166 NDVEEMERILN-ARD-VSLNMQLGEDDSSEVHDLVPFPEANQEAVLLETQERQMKSQLLY 223
Query: 1362 DILNSLTPRESKVLRMRFGIEMSS-DHTLEEVGKQFDVTRERIRQIEAKALRKL 1414
+ + +L R ++ R +S+ TL+E+G++F +++ER+RQI A+A++K+
Sbjct: 224 EAVEALEARHKEIFVAR---SLSAVPRTLKELGEKFSISQERVRQIHARAMKKV 274
>TIGR_CMR|BA_4294 [details] [associations]
symbol:BA_4294 "RNA polymerase sigma-F factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
TIGRFAMs:TIGR02885 RefSeq:NP_846527.1 RefSeq:YP_020937.1
RefSeq:YP_030233.1 HSSP:O32728 ProteinModelPortal:Q81MF5 SMR:Q81MF5
DNASU:1088482 EnsemblBacteria:EBBACT00000012570
EnsemblBacteria:EBBACT00000017412 EnsemblBacteria:EBBACT00000022371
GeneID:1088482 GeneID:2818699 GeneID:2850307 KEGG:ban:BA_4294
KEGG:bar:GBAA_4294 KEGG:bat:BAS3983 OMA:IRRSQEG
ProtClustDB:PRK05572 BioCyc:BANT260799:GJAJ-4040-MONOMER
BioCyc:BANT261594:GJ7F-4178-MONOMER Uniprot:Q81MF5
Length = 252
Score = 234 (87.4 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 64/244 (26%), Positives = 132/244 (54%)
Query: 382 NDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKA 441
++L+ + +K G+ +AR + ++N+RLV S+ +++ +RG + DL Q G IGL+K+
Sbjct: 17 HELKALIQKSQDGDQQARDT---IVQSNMRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKS 73
Query: 442 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETG 501
VDKF+ KFSTYA I I R + D ++++ + ET NKI ++ ++ +E G
Sbjct: 74 VDKFDLSFDVKFSTYAVPMIIGEIQRFLRDDG-SVKVSRSLKETGNKIRKMRDELSKEFG 132
Query: 502 SEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAA 561
P + +A +E+ E++ + ++ P S+ V +++ GD I + +A +
Sbjct: 133 RAPTINEVAEALELTPEEVVLAQEASRAPSSIHETVYEND----GDPITILDQIA-DQSE 187
Query: 562 LNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 621
+ +K+ + L RE ++ +R+ D T EV ++ +++ ++ ++E K L
Sbjct: 188 TKWFDKIALKEAIRELDERERLIVYLRY----YKDQTQSEVAERIGISQVQVSRLEKKIL 243
Query: 622 RKLR 625
++++
Sbjct: 244 KQMK 247
Score = 234 (87.4 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 64/244 (26%), Positives = 132/244 (54%)
Query: 1172 NDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKA 1231
++L+ + +K G+ +AR + ++N+RLV S+ +++ +RG + DL Q G IGL+K+
Sbjct: 17 HELKALIQKSQDGDQQARDT---IVQSNMRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKS 73
Query: 1232 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETG 1291
VDKF+ KFSTYA I I R + D ++++ + ET NKI ++ ++ +E G
Sbjct: 74 VDKFDLSFDVKFSTYAVPMIIGEIQRFLRDDG-SVKVSRSLKETGNKIRKMRDELSKEFG 132
Query: 1292 SEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAA 1351
P + +A +E+ E++ + ++ P S+ V +++ GD I + +A +
Sbjct: 133 RAPTINEVAEALELTPEEVVLAQEASRAPSSIHETVYEND----GDPITILDQIA-DQSE 187
Query: 1352 LNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKAL 1411
+ +K+ + L RE ++ +R+ D T EV ++ +++ ++ ++E K L
Sbjct: 188 TKWFDKIALKEAIRELDERERLIVYLRY----YKDQTQSEVAERIGISQVQVSRLEKKIL 243
Query: 1412 RKLR 1415
++++
Sbjct: 244 KQMK 247
>UNIPROTKB|P0AGB3 [details] [associations]
symbol:rpoH species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0016987 "sigma
factor activity" evidence=IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;IMP] [GO:0009408
"response to heat" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0006355
EMBL:U00039 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
EMBL:J05516 EMBL:M20668 EMBL:K02177 PIR:H65142 RefSeq:NP_417918.1
RefSeq:YP_491973.1 ProteinModelPortal:P0AGB3 SMR:P0AGB3
DIP:DIP-46203N IntAct:P0AGB3 PRIDE:P0AGB3 DNASU:947970
EnsemblBacteria:EBESCT00000004588 EnsemblBacteria:EBESCT00000004589
EnsemblBacteria:EBESCT00000004590 EnsemblBacteria:EBESCT00000004591
EnsemblBacteria:EBESCT00000004592 EnsemblBacteria:EBESCT00000004593
EnsemblBacteria:EBESCT00000018203 GeneID:12933503 GeneID:947970
KEGG:ecj:Y75_p3717 KEGG:eco:b3461 PATRIC:32122366 EchoBASE:EB0890
EcoGene:EG10897 eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
OMA:LNNDEVH ProtClustDB:PRK06596 BioCyc:EcoCyc:RPOH-MONOMER
BioCyc:ECOL316407:JW3426-MONOMER BioCyc:MetaCyc:RPOH-MONOMER
Genevestigator:P0AGB3 TIGRFAMs:TIGR02392 Uniprot:P0AGB3
Length = 284
Score = 231 (86.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 67/258 (25%), Positives = 134/258 (51%)
Query: 378 VLPLNDLRDINRKM-IAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNI 436
+L ++ R + K+ G+++A K + ++LR V+ IA+ Y GL DLIQEGNI
Sbjct: 28 MLSADEERALAEKLHYHGDLEAAKT---LILSHLRFVVHIARNYAGYGLPQADLIQEGNI 84
Query: 437 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQI 496
GLMKAV +F G + ++A WI+ I + R +++ + K+ R+
Sbjct: 85 GLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQ--RKLFFNLRKT 142
Query: 497 LQETG--SEPDPSVIAIKMEMPEEKIRKI-MKIAKEPVSMESPVGDDEDSH-LGD--FIE 550
Q G ++ + ++A ++ + + +R++ ++A + ++ + DD DS + +++
Sbjct: 143 KQRLGWFNQDEVEMVARELGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLYLQ 202
Query: 551 DENM-LAPS--DAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFD 607
D++ A D + + D + L R ++R R+ ++ + TL+E+ ++
Sbjct: 203 DKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDIIRARW-LDEDNKSTLQELADRYG 261
Query: 608 VTRERIRQIEAKALRKLR 625
V+ ER+RQ+E A++KLR
Sbjct: 262 VSAERVRQLEKNAMKKLR 279
Score = 231 (86.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 67/258 (25%), Positives = 134/258 (51%)
Query: 1168 VLPLNDLRDINRKM-IAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNI 1226
+L ++ R + K+ G+++A K + ++LR V+ IA+ Y GL DLIQEGNI
Sbjct: 28 MLSADEERALAEKLHYHGDLEAAKT---LILSHLRFVVHIARNYAGYGLPQADLIQEGNI 84
Query: 1227 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQI 1286
GLMKAV +F G + ++A WI+ I + R +++ + K+ R+
Sbjct: 85 GLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQ--RKLFFNLRKT 142
Query: 1287 LQETG--SEPDPSVIAIKMEMPEEKIRKI-MKIAKEPVSMESPVGDDEDSH-LGD--FIE 1340
Q G ++ + ++A ++ + + +R++ ++A + ++ + DD DS + +++
Sbjct: 143 KQRLGWFNQDEVEMVARELGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLYLQ 202
Query: 1341 DENM-LAPS--DAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFD 1397
D++ A D + + D + L R ++R R+ ++ + TL+E+ ++
Sbjct: 203 DKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDIIRARW-LDEDNKSTLQELADRYG 261
Query: 1398 VTRERIRQIEAKALRKLR 1415
V+ ER+RQ+E A++KLR
Sbjct: 262 VSAERVRQLEKNAMKKLR 279
>TIGR_CMR|CHY_1959 [details] [associations]
symbol:CHY_1959 "RNA polymerase sigma-F factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02885
RefSeq:YP_360778.1 ProteinModelPortal:Q3AAQ6 STRING:Q3AAQ6
GeneID:3726621 KEGG:chy:CHY_1959 PATRIC:21277005 OMA:PRERYIL
ProtClustDB:CLSK941224 BioCyc:CHYD246194:GJCN-1958-MONOMER
Uniprot:Q3AAQ6
Length = 257
Score = 224 (83.9 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 69/245 (28%), Positives = 126/245 (51%)
Query: 383 DLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAV 442
+++++ K G++ AR+ ++ NL+LV + +++ RG + DL Q G IGL+KA+
Sbjct: 20 EIKELIEKAQKGDVAARE---KLINCNLKLVFKVVERFLHRGYEVEDLFQIGTIGLIKAI 76
Query: 443 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGS 502
DKF+ ++ KFSTYA I I R + D + IRI E KI + + + G
Sbjct: 77 DKFDLKQQVKFSTYAVPMIVGEIRRFLRDD-QAIRISRSTKELGVKILKEKEALTVKLGR 135
Query: 503 EPDPSVIAIKMEMPEEKIRKIMKIAKEPVSM-ESPVGDDEDS-HLGDFIEDENMLAPSDA 560
EP + + + E I + ++ + S+ E+ DD D +L D I+ E +
Sbjct: 136 EPTIAELEETLGYSREAIVEALEAGQSLASLFETVHQDDGDPIYLLDQIKQEG---DEEQ 192
Query: 561 ALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 620
L ++ +K++L+ L PRE +L RF + T E+ + +++ ++ ++E +A
Sbjct: 193 TLLENIS--IKEVLSKLEPRERYILINRF----FKEKTQMEIARTLGISQVQVSRLERQA 246
Query: 621 LRKLR 625
L KL+
Sbjct: 247 LLKLK 251
Score = 224 (83.9 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 69/245 (28%), Positives = 126/245 (51%)
Query: 1173 DLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAV 1232
+++++ K G++ AR+ ++ NL+LV + +++ RG + DL Q G IGL+KA+
Sbjct: 20 EIKELIEKAQKGDVAARE---KLINCNLKLVFKVVERFLHRGYEVEDLFQIGTIGLIKAI 76
Query: 1233 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGS 1292
DKF+ ++ KFSTYA I I R + D + IRI E KI + + + G
Sbjct: 77 DKFDLKQQVKFSTYAVPMIVGEIRRFLRDD-QAIRISRSTKELGVKILKEKEALTVKLGR 135
Query: 1293 EPDPSVIAIKMEMPEEKIRKIMKIAKEPVSM-ESPVGDDEDS-HLGDFIEDENMLAPSDA 1350
EP + + + E I + ++ + S+ E+ DD D +L D I+ E +
Sbjct: 136 EPTIAELEETLGYSREAIVEALEAGQSLASLFETVHQDDGDPIYLLDQIKQEG---DEEQ 192
Query: 1351 ALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410
L ++ +K++L+ L PRE +L RF + T E+ + +++ ++ ++E +A
Sbjct: 193 TLLENIS--IKEVLSKLEPRERYILINRF----FKEKTQMEIARTLGISQVQVSRLERQA 246
Query: 1411 LRKLR 1415
L KL+
Sbjct: 247 LLKLK 251
>TIGR_CMR|SPO_0406 [details] [associations]
symbol:SPO_0406 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_165669.1
ProteinModelPortal:Q5LWD6 GeneID:3196326 KEGG:sil:SPO0406
PATRIC:23374073 OMA:GREWIEA ProtClustDB:PRK07500 Uniprot:Q5LWD6
Length = 292
Score = 221 (82.9 bits), Expect = 8.7e-17, P = 8.7e-17
Identities = 68/241 (28%), Positives = 120/241 (49%)
Query: 401 AKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 460
A + A +RL IS+A K+ G DLIQE +GLMKA DKF+ RG +FSTYA WW
Sbjct: 41 ALHRLITAYMRLAISMAAKFKRYGAPMNDLIQEAGLGLMKAADKFDPDRGVRFSTYAVWW 100
Query: 461 IRQAITRSIADQARTIRI-----PVHMIETINKI-SRISRQILQETGSEPDP----SVIA 510
I+ +I + +R + + ++ +R+ R+ + G D +IA
Sbjct: 101 IKASIQDYVMRNWSMVRTGSTSSQKSLFFNMRRVQARLEREAATD-GLALDRHQLHQMIA 159
Query: 511 IKMEMPEEKIRKIM-KIAKEPVSMESPVGDDEDSHLG-DFIEDENMLAPSDAALN---AS 565
++ +P + + +++ S+ + DE+ + +EDE+ A A
Sbjct: 160 SEIGVPLRDVEMMEGRLSGSDFSLNATQASDEEGREWIEALEDESEQAAELVAHRHDTEQ 219
Query: 566 MRSVVKDILNSLTPRESKVLRMRFGIEMSSD-HTLEEVGKQFDVTRERIRQIEAKALRKL 624
+R + + + +L RE ++R R ++ + TLE +G + +++ER+RQ+EA A K+
Sbjct: 220 LRDWLIEAMQALNERERFIVRER---KLRDEPRTLESLGDELGLSKERVRQLEAAAFAKM 276
Query: 625 R 625
R
Sbjct: 277 R 277
Score = 221 (82.9 bits), Expect = 8.7e-17, P = 8.7e-17
Identities = 68/241 (28%), Positives = 120/241 (49%)
Query: 1191 AKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 1250
A + A +RL IS+A K+ G DLIQE +GLMKA DKF+ RG +FSTYA WW
Sbjct: 41 ALHRLITAYMRLAISMAAKFKRYGAPMNDLIQEAGLGLMKAADKFDPDRGVRFSTYAVWW 100
Query: 1251 IRQAITRSIADQARTIRI-----PVHMIETINKI-SRISRQILQETGSEPDP----SVIA 1300
I+ +I + +R + + ++ +R+ R+ + G D +IA
Sbjct: 101 IKASIQDYVMRNWSMVRTGSTSSQKSLFFNMRRVQARLEREAATD-GLALDRHQLHQMIA 159
Query: 1301 IKMEMPEEKIRKIM-KIAKEPVSMESPVGDDEDSHLG-DFIEDENMLAPSDAALN---AS 1355
++ +P + + +++ S+ + DE+ + +EDE+ A A
Sbjct: 160 SEIGVPLRDVEMMEGRLSGSDFSLNATQASDEEGREWIEALEDESEQAAELVAHRHDTEQ 219
Query: 1356 MRSVVKDILNSLTPRESKVLRMRFGIEMSSD-HTLEEVGKQFDVTRERIRQIEAKALRKL 1414
+R + + + +L RE ++R R ++ + TLE +G + +++ER+RQ+EA A K+
Sbjct: 220 LRDWLIEAMQALNERERFIVRER---KLRDEPRTLESLGDELGLSKERVRQLEAAAFAKM 276
Query: 1415 R 1415
R
Sbjct: 277 R 277
>TIGR_CMR|ECH_0655 [details] [associations]
symbol:ECH_0655 "RNA polymerase sigma-32 factor"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_507464.1
ProteinModelPortal:Q2GGG9 STRING:Q2GGG9 GeneID:3928045
KEGG:ech:ECH_0655 PATRIC:20576762 OMA:HHLVTSH
ProtClustDB:CLSK749586 BioCyc:ECHA205920:GJNR-657-MONOMER
Uniprot:Q2GGG9
Length = 297
Score = 213 (80.0 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 65/250 (26%), Positives = 125/250 (50%)
Query: 401 AKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 460
A R +T ++LRLV+ +A + + L ++LI EGNIGLM+AV KF G++ STYA WW
Sbjct: 48 AHRLVT-SHLRLVVKVALSFKNYELPLIELIMEGNIGLMQAVKKFNPTLGFRLSTYAIWW 106
Query: 461 IRQAITRSIADQARTIRIPVHMIET--INKISRISRQILQETGS--EPDPSVIAIKMEMP 516
I+ I I I+I + + +I +++ + + + D +IA K
Sbjct: 107 IKAFIKDYILKSWSCIKIGTTQAQRKLFFSLRKIKKKLFKYNHNITKEDIKLIANKCSTS 166
Query: 517 EEKIRKIMK--IAKEPVSMESPVGDDEDS--HLGDFIEDENMLAPSDAALNASM---RSV 569
E+++ ++ + + ++ E +D + L + I+ + LN + +++
Sbjct: 167 EQEVEQMNRYFLYRDRSLNELVFSNDNQNGVELQEIIKCDTPNQEDTYLLNEELNIKKAL 226
Query: 570 VKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLAH 629
+ L++L R + R IE TL+++ +++++++ER+RQIE A K++
Sbjct: 227 ISQALSTLNERYRDIFIRRRLIE--EPDTLDKLSQEYNISKERVRQIEMHAFTKVKNFII 284
Query: 630 DWLEQRTHQN 639
E+ H N
Sbjct: 285 SEREKLGHCN 294
Score = 212 (79.7 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 62/237 (26%), Positives = 122/237 (51%)
Query: 1191 AKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 1250
A R +T ++LRLV+ +A + + L ++LI EGNIGLM+AV KF G++ STYA WW
Sbjct: 48 AHRLVT-SHLRLVVKVALSFKNYELPLIELIMEGNIGLMQAVKKFNPTLGFRLSTYAIWW 106
Query: 1251 IRQAITRSIADQARTIRIPVHMIET--INKISRISRQILQETGS--EPDPSVIAIKMEMP 1306
I+ I I I+I + + +I +++ + + + D +IA K
Sbjct: 107 IKAFIKDYILKSWSCIKIGTTQAQRKLFFSLRKIKKKLFKYNHNITKEDIKLIANKCSTS 166
Query: 1307 EEKIRKIMK--IAKEPVSMESPVGDDEDS--HLGDFIEDENMLAPSDAALNASM---RSV 1359
E+++ ++ + + ++ E +D + L + I+ + LN + +++
Sbjct: 167 EQEVEQMNRYFLYRDRSLNELVFSNDNQNGVELQEIIKCDTPNQEDTYLLNEELNIKKAL 226
Query: 1360 VKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 1416
+ L++L R + R IE TL+++ +++++++ER+RQIE A K+++
Sbjct: 227 ISQALSTLNERYRDIFIRRRLIE--EPDTLDKLSQEYNISKERVRQIEMHAFTKVKN 281
Score = 50 (22.7 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 17/77 (22%), Positives = 39/77 (50%)
Query: 122 DSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKR-IEEGLKDMIHAISSCPTTIMEILI 180
+S F T+D + Y+ E+ + +L+ + E +A+ E G+ H + T+ + +++
Sbjct: 4 NSIFSLTQDNLMSYINEVHAFPILSPEEEDRLARNWYENGIVADAHRLV---TSHLRLVV 60
Query: 181 AADKISKN-EIKIDEIV 196
KN E+ + E++
Sbjct: 61 KVALSFKNYELPLIELI 77
>TIGR_CMR|CBU_1909 [details] [associations]
symbol:CBU_1909 "RNA polymerase sigma-32 factor"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 GenomeReviews:AE016828_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392
HSSP:Q9EZJ8 EMBL:AF120928 ProteinModelPortal:Q9LAQ0 PRIDE:Q9LAQ0
PATRIC:17932555 BioCyc:CBUR227377:GJ7S-1884-MONOMER Uniprot:Q9LAQ0
Length = 288
Score = 218 (81.8 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 73/245 (29%), Positives = 121/245 (49%)
Query: 400 KAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 459
+A R++ ++LR V+ IA+ Y+ GL DLIQEGNIGLMKAV +F+ + G + ++A
Sbjct: 50 EAARKLVLSHLRFVVRIARGYSGYGLSQADLIQEGNIGLMKAVKRFDPQVGVRLVSFAVH 109
Query: 460 WIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEK 519
WIR I I R ++I + K+ R+ ++ G D A+ E+
Sbjct: 110 WIRAEIHEFILKNWRIVKIATTKAQ--RKLFFNLRKHAKKRGWFSDHEAFALAEEL-NVS 166
Query: 520 IRKIMKIAKEPVSMESPV-GDDEDSHLGD--------FIEDEN-----MLAPSDAALNAS 565
+ + ++ + S + G DE+S G ++ED+ L S+ A +
Sbjct: 167 TKDVRQMEERLNSYDEAFDGADEESDSGTPSWGAPAHYLEDKRYNPALQLERSNWADDQE 226
Query: 566 MRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
R + + + S+ R +L R+ E S TL E+ Q+ V+ ERIRQ+E A++K+R
Sbjct: 227 HR--LHNAMQSMDDRSRDILYQRWLSEKKS--TLHELAAQYAVSAERIRQLEKNAMQKIR 282
Query: 626 PLAHD 630
D
Sbjct: 283 TAMAD 287
Score = 217 (81.4 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 72/240 (30%), Positives = 120/240 (50%)
Query: 1190 KAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 1249
+A R++ ++LR V+ IA+ Y+ GL DLIQEGNIGLMKAV +F+ + G + ++A
Sbjct: 50 EAARKLVLSHLRFVVRIARGYSGYGLSQADLIQEGNIGLMKAVKRFDPQVGVRLVSFAVH 109
Query: 1250 WIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEK 1309
WIR I I R ++I + K+ R+ ++ G D A+ E+
Sbjct: 110 WIRAEIHEFILKNWRIVKIATTKAQ--RKLFFNLRKHAKKRGWFSDHEAFALAEEL-NVS 166
Query: 1310 IRKIMKIAKEPVSMESPV-GDDEDSHLGD--------FIEDEN-----MLAPSDAALNAS 1355
+ + ++ + S + G DE+S G ++ED+ L S+ A +
Sbjct: 167 TKDVRQMEERLNSYDEAFDGADEESDSGTPSWGAPAHYLEDKRYNPALQLERSNWADDQE 226
Query: 1356 MRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
R + + + S+ R +L R+ E S TL E+ Q+ V+ ERIRQ+E A++K+R
Sbjct: 227 HR--LHNAMQSMDDRSRDILYQRWLSEKKS--TLHELAAQYAVSAERIRQLEKNAMQKIR 282
>UNIPROTKB|Q7D5S2 [details] [associations]
symbol:sigF "Alternative RNA polymerase sigma factor SigF"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0006629 "lipid metabolic process"
evidence=IMP] [GO:0006979 "response to oxidative stress"
evidence=IMP] [GO:0006995 "cellular response to nitrogen
starvation" evidence=IEP] [GO:0009409 "response to cold"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0034059 "response to anoxia" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0046677 "response to antibiotic" evidence=IMP] [GO:0052572
"response to host immune response" evidence=IEP] [GO:0070417
"cellular response to cold" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0045893 GO:GO:0006979 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006629 GO:GO:0046677 GO:GO:0052572 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0070417
GO:GO:0006995 GO:GO:0034059 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0043175
HOGENOM:HOG000270270 KO:K03090 TIGRFAMs:TIGR02980 EMBL:AL123456
RefSeq:NP_217803.1 RefSeq:NP_337914.1 RefSeq:YP_006516763.1
SMR:Q7D5S2 IntAct:Q7D5S2 EnsemblBacteria:EBMYCT00000001724
EnsemblBacteria:EBMYCT00000068996 GeneID:13318109 GeneID:888727
GeneID:922492 KEGG:mtc:MT3385 KEGG:mtu:Rv3286c KEGG:mtv:RVBD_3286c
PATRIC:18129196 TubercuList:Rv3286c OMA:EMDRDEV
ProtClustDB:PRK07122 Uniprot:Q7D5S2
Length = 261
Score = 197 (74.4 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 64/249 (25%), Positives = 124/249 (49%)
Query: 383 DLRDINRKMI---AGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLM 439
D+ ++ R+++ AG + ++ + ++ + L L IA+++ RG DLIQ +GL+
Sbjct: 18 DVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLV 77
Query: 440 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQE 499
A +F+ + G F ++A I + R D + ++++P + E ++ + + Q
Sbjct: 78 NAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQR 137
Query: 500 TGSEPDPSVIAIKMEMPE-EKIRKIMKIAK-EPVSMESPVGDDEDSHLGDFIEDENMLAP 557
G P S +A ++ M E I ++ + +S++S G D+D+ I D L
Sbjct: 138 LGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARA---ITDT--LGD 192
Query: 558 SDAALNA-SMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616
DA L+ R V++ +L +L RE VL +RF M+ E VG +++ + ++
Sbjct: 193 VDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG----ISQMHVSRL 248
Query: 617 EAKALRKLR 625
AK+L +LR
Sbjct: 249 LAKSLARLR 257
Score = 197 (74.4 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 64/249 (25%), Positives = 124/249 (49%)
Query: 1173 DLRDINRKMI---AGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLM 1229
D+ ++ R+++ AG + ++ + ++ + L L IA+++ RG DLIQ +GL+
Sbjct: 18 DVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLV 77
Query: 1230 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQE 1289
A +F+ + G F ++A I + R D + ++++P + E ++ + + Q
Sbjct: 78 NAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQR 137
Query: 1290 TGSEPDPSVIAIKMEMPE-EKIRKIMKIAK-EPVSMESPVGDDEDSHLGDFIEDENMLAP 1347
G P S +A ++ M E I ++ + +S++S G D+D+ I D L
Sbjct: 138 LGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARA---ITDT--LGD 192
Query: 1348 SDAALNA-SMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 1406
DA L+ R V++ +L +L RE VL +RF M+ E VG +++ + ++
Sbjct: 193 VDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG----ISQMHVSRL 248
Query: 1407 EAKALRKLR 1415
AK+L +LR
Sbjct: 249 LAKSLARLR 257
>TIGR_CMR|CPS_0161 [details] [associations]
symbol:CPS_0161 "RNA polymerase sigma-32 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_266929.1 ProteinModelPortal:Q48AI4
STRING:Q48AI4 DNASU:3520829 GeneID:3520829 KEGG:cps:CPS_0161
PATRIC:21463737 OMA:EIAYAER BioCyc:CPSY167879:GI48-264-MONOMER
Uniprot:Q48AI4
Length = 285
Score = 200 (75.5 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 62/241 (25%), Positives = 124/241 (51%)
Query: 1190 KAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 1249
+A +E+ ++LR VI +AK Y+ GL DL+QEGN+GLMKAV +F G + ++A
Sbjct: 47 QAAQELIMSHLRFVIHVAKGYSGYGLPHADLVQEGNVGLMKAVKRFNPEVGVRLVSFAVH 106
Query: 1250 WIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETG--SEPDPSVIAIKMEMPE 1307
WI+ I + R +++ + K+ R+ + G S + + +A + +
Sbjct: 107 WIKAEIHEFVLKNWRIVKVATTKAQ--RKLFFNLRKNKKRLGWFSTEEVNTVAENLGVTT 164
Query: 1308 EKIRKI-MKIAKEPVSMESPVGDDEDSHLGD-------FIEDENM-LA---PSDAALNAS 1355
+ + ++ +++ + E + D+D +LG +++D+ LA +D N +
Sbjct: 165 KDVMEMESRMSSHDQAFE--LSKDDDDNLGSSSFSPAQYLQDKQSDLAVEVENDNWDNHA 222
Query: 1356 MRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
+ + L +L R +++ R+ E + TL+E+ ++ ++ ER+RQ+E AL KL+
Sbjct: 223 NKRL-STALVTLDERSQDIIKTRWLTEDKT--TLQELANKYQISAERVRQLEKNALSKLK 279
Query: 1416 H 1416
+
Sbjct: 280 N 280
Score = 199 (75.1 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 62/240 (25%), Positives = 123/240 (51%)
Query: 400 KAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 459
+A +E+ ++LR VI +AK Y+ GL DL+QEGN+GLMKAV +F G + ++A
Sbjct: 47 QAAQELIMSHLRFVIHVAKGYSGYGLPHADLVQEGNVGLMKAVKRFNPEVGVRLVSFAVH 106
Query: 460 WIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETG--SEPDPSVIAIKMEMPE 517
WI+ I + R +++ + K+ R+ + G S + + +A + +
Sbjct: 107 WIKAEIHEFVLKNWRIVKVATTKAQ--RKLFFNLRKNKKRLGWFSTEEVNTVAENLGVTT 164
Query: 518 EKIRKI-MKIAKEPVSMESPVGDDEDSHLGD-------FIEDENM-LA---PSDAALNAS 565
+ + ++ +++ + E + D+D +LG +++D+ LA +D N +
Sbjct: 165 KDVMEMESRMSSHDQAFE--LSKDDDDNLGSSSFSPAQYLQDKQSDLAVEVENDNWDNHA 222
Query: 566 MRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
+ + L +L R +++ R+ E + TL+E+ ++ ++ ER+RQ+E AL KL+
Sbjct: 223 NKRL-STALVTLDERSQDIIKTRWLTEDKT--TLQELANKYQISAERVRQLEKNALSKLK 279
Score = 45 (20.9 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 132 IKMYMREMGSVELLTRDGEIEIAKRI 157
I+ YM+ S+ +LT + E ++A R+
Sbjct: 15 IEAYMQSAYSIPMLTAEKEHDLATRL 40
Score = 45 (20.9 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 922 IKMYMREMGSVELLTRDGEIEIAKRI 947
I+ YM+ S+ +LT + E ++A R+
Sbjct: 15 IEAYMQSAYSIPMLTAEKEHDLATRL 40
>UNIPROTKB|O83707 [details] [associations]
symbol:TP_0709 "RNA polymerase sigma factor" species:243276
"Treponema pallidum subsp. pallidum str. Nichols" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
GO:GO:0003899 EMBL:AE000520 GenomeReviews:AE000520_GR
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
OMA:TYAITRI TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:A71290
RefSeq:NP_219146.1 ProteinModelPortal:O83707 IntAct:O83707
MINT:MINT-6480056 GeneID:2610969 KEGG:tpa:TP0709 PATRIC:20531509
ProtClustDB:PRK06288 Uniprot:O83707
Length = 262
Score = 195 (73.7 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 65/208 (31%), Positives = 107/208 (51%)
Query: 425 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI---TRSIADQARTIRIPVH 481
++F DL+ G GL A+DK++ + +F+TYA IR AI RSI R++R
Sbjct: 53 VEFDDLVSYGIFGLFDAIDKYDPEKNIRFNTYAVTRIRGAIFDELRSIDWVPRSVRQQTR 112
Query: 482 MIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPV-SM-ESPVGD 539
IE I+ + + L ++ + + A+ +E+ EE + ++K++ V S+ +S G
Sbjct: 113 QIE--EAIADLEAR-LGRXATDTEIAC-ALNIEL-EEYHQLLLKVSGTSVISLADSKFGG 167
Query: 540 DEDSHL--GDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDH 597
DE H+ GD IE L P ++ ++ + + L+ RE +VL + + EM
Sbjct: 168 DERDHVSVGDSIEAPASLNPDVIVEREEIKRIIAEAIRELSQREQQVLILYYYEEM---- 223
Query: 598 TLEEVGKQFDVTRERIRQIEAKALRKLR 625
TL+E+GK VT RI QI A KL+
Sbjct: 224 TLKEIGKVLKVTESRISQIHTSANLKLK 251
Score = 195 (73.7 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 65/208 (31%), Positives = 107/208 (51%)
Query: 1215 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI---TRSIADQARTIRIPVH 1271
++F DL+ G GL A+DK++ + +F+TYA IR AI RSI R++R
Sbjct: 53 VEFDDLVSYGIFGLFDAIDKYDPEKNIRFNTYAVTRIRGAIFDELRSIDWVPRSVRQQTR 112
Query: 1272 MIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPV-SM-ESPVGD 1329
IE I+ + + L ++ + + A+ +E+ EE + ++K++ V S+ +S G
Sbjct: 113 QIE--EAIADLEAR-LGRXATDTEIAC-ALNIEL-EEYHQLLLKVSGTSVISLADSKFGG 167
Query: 1330 DEDSHL--GDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDH 1387
DE H+ GD IE L P ++ ++ + + L+ RE +VL + + EM
Sbjct: 168 DERDHVSVGDSIEAPASLNPDVIVEREEIKRIIAEAIRELSQREQQVLILYYYEEM---- 223
Query: 1388 TLEEVGKQFDVTRERIRQIEAKALRKLR 1415
TL+E+GK VT RI QI A KL+
Sbjct: 224 TLKEIGKVLKVTESRISQIHTSANLKLK 251
>TIGR_CMR|CHY_0617 [details] [associations]
symbol:CHY_0617 "RNA polymerase sigma-K factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK05803
TIGRFAMs:TIGR02846 RefSeq:YP_359473.1 ProteinModelPortal:Q3AEG1
STRING:Q3AEG1 GeneID:3728237 KEGG:chy:CHY_0617 PATRIC:21274371
OMA:LERETEC BioCyc:CHYD246194:GJCN-617-MONOMER Uniprot:Q3AEG1
Length = 234
Score = 125 (49.1 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 29/67 (43%), Positives = 38/67 (56%)
Query: 399 RKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 458
R+A+ + E NLRLV I KK+ G DLI G IGL+KA+D F +G K +TYA
Sbjct: 48 REARDVLAERNLRLVAHIVKKFEGTGEATEDLISIGTIGLIKAIDTFRPDKGTKLATYAA 107
Query: 459 WWIRQAI 465
+ I
Sbjct: 108 KCVENEI 114
Score = 125 (49.1 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 29/67 (43%), Positives = 38/67 (56%)
Query: 1189 RKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 1248
R+A+ + E NLRLV I KK+ G DLI G IGL+KA+D F +G K +TYA
Sbjct: 48 REARDVLAERNLRLVAHIVKKFEGTGEATEDLISIGTIGLIKAIDTFRPDKGTKLATYAA 107
Query: 1249 WWIRQAI 1255
+ I
Sbjct: 108 KCVENEI 114
Score = 115 (45.5 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 531 VSMESPVGDDEDSH---LGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRM 587
VS+ P+G D++ + L D + + ++ K+ L LTPRE KV+
Sbjct: 128 VSLYDPIGFDKEGNEITLLDILGTRGDIVLEQVVRMLDAETIEKN-LKKLTPRERKVIEE 186
Query: 588 RFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKL 624
RFG+ + T E+ K+ ++R + +IE +A+ KL
Sbjct: 187 RFGLSQTPRKTQREIAKKMGISRSYVSRIEKRAILKL 223
Score = 115 (45.5 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 1321 VSMESPVGDDEDSH---LGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRM 1377
VS+ P+G D++ + L D + + ++ K+ L LTPRE KV+
Sbjct: 128 VSLYDPIGFDKEGNEITLLDILGTRGDIVLEQVVRMLDAETIEKN-LKKLTPRERKVIEE 186
Query: 1378 RFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKL 1414
RFG+ + T E+ K+ ++R + +IE +A+ KL
Sbjct: 187 RFGLSQTPRKTQREIAKKMGISRSYVSRIEKRAILKL 223
>UNIPROTKB|P0ABS5 [details] [associations]
symbol:dnaG species:83333 "Escherichia coli K-12"
[GO:0008270 "zinc ion binding" evidence=IEA;IDA] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003896 "DNA primase activity"
evidence=IEA;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] InterPro:IPR002694
InterPro:IPR006295 InterPro:IPR013173 InterPro:IPR019475
Pfam:PF01807 Pfam:PF08278 Pfam:PF10410 PIRSF:PIRSF002811
SMART:SM00400 SMART:SM00766 InterPro:IPR006171 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:U28379 GO:GO:0003896 GO:GO:0030894 Gene3D:1.10.860.10
InterPro:IPR016136 PROSITE:PS50880 EMBL:J01687 EMBL:V00274
EMBL:V00346 PIR:A03423 RefSeq:NP_417538.1 RefSeq:YP_491258.1
PDB:1DD9 PDB:1DDE PDB:1EQN PDB:1T3W PDB:2HAJ PDB:3B39 PDBsum:1DD9
PDBsum:1DDE PDBsum:1EQN PDBsum:1T3W PDBsum:2HAJ PDBsum:3B39
ProteinModelPortal:P0ABS5 SMR:P0ABS5 DIP:DIP-47954N IntAct:P0ABS5
MINT:MINT-1222307 PRIDE:P0ABS5 EnsemblBacteria:EBESCT00000002137
EnsemblBacteria:EBESCT00000002138 EnsemblBacteria:EBESCT00000002139
EnsemblBacteria:EBESCT00000017276 GeneID:12933152 GeneID:947570
KEGG:ecj:Y75_p2992 KEGG:eco:b3066 PATRIC:32121546 EchoBASE:EB0235
EcoGene:EG10239 eggNOG:COG0358 HOGENOM:HOG000014483 KO:K02316
OMA:HMFDSML ProtClustDB:PRK05667 BioCyc:EcoCyc:EG10239-MONOMER
BioCyc:ECOL316407:JW3038-MONOMER BioCyc:MetaCyc:EG10239-MONOMER
EvolutionaryTrace:P0ABS5 Genevestigator:P0ABS5 Gene3D:3.90.580.10
Gene3D:3.90.980.10 InterPro:IPR013264 Pfam:PF13662 Pfam:PF08275
SMART:SM00493 TIGRFAMs:TIGR01391 Uniprot:P0ABS5
Length = 581
Score = 124 (48.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 752 NSSYTCFDGDQXXXXXXXXXLEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKK 811
N+ C+DGD+ LE L Y TD + ++F+FLPD DPD+ +RK G + F +
Sbjct: 302 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 361
Score = 124 (48.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 692 GISGFLLTTPDPVH----ETPLFHKSNELYGLFEAKNAIGKSGYVLITEGYMDVIGLSQF 747
G G +L P + ET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+
Sbjct: 217 GFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQY 276
Query: 748 G 748
G
Sbjct: 277 G 277
>TIGR_CMR|CHY_1013 [details] [associations]
symbol:CHY_1013 "RNA polymerase sigma factor for flagellar
operon" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0030092
"regulation of flagellum assembly" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG1191 HOGENOM:HOG000270271 KO:K02405 TIGRFAMs:TIGR02479
RefSeq:YP_359860.1 ProteinModelPortal:Q3ADC4 STRING:Q3ADC4
GeneID:3727796 KEGG:chy:CHY_1013 PATRIC:21275159 OMA:RTEDELW
BioCyc:CHYD246194:GJCN-1012-MONOMER Uniprot:Q3ADC4
Length = 254
Score = 178 (67.7 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 65/241 (26%), Positives = 117/241 (48%)
Query: 397 KARKAKREMTEANLRLV--ISIAKKYT-DRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 453
K+ + + E+ E L LV +S A L D+ G IGL++AV+ ++ RG KF
Sbjct: 19 KSLQLRNELLEYYLPLVRKVSAAMSLKLPTHLSREDIEGYGIIGLIEAVETYDQNRGVKF 78
Query: 454 STYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKM 513
+YA+ IR AI + Q +P + + I K++ +L G E +A ++
Sbjct: 79 ESYASLKIRAAIIDELRKQNF---LPRSVWDKIKKVTTSEEMLLNALGEEVPVEKVAEQL 135
Query: 514 EMPEEKIRKIMKIA--KEPVSMESPVGDDEDSHLGDF--IEDENMLAPSDAALNASMRSV 569
+ + KI + K +S++ + D E S + F + D+ +P + L
Sbjct: 136 GVSVSDVLKIKTLIALKNHLSLDEII-DPEGS-VDRFAGLADDEKYSPENKFLKRVEIEE 193
Query: 570 VKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLAH 629
+++ L L+ RE +L++ + E+S L+E+ D++ R+ QI +KAL KLR L +
Sbjct: 194 LREALKRLSDRERLILQLFYVEELS----LKEIAAVLDISTSRVSQIASKALGKLRKLLN 249
Query: 630 D 630
+
Sbjct: 250 E 250
Score = 173 (66.0 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 64/236 (27%), Positives = 114/236 (48%)
Query: 1187 KARKAKREMTEANLRLV--ISIAKKYT-DRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 1243
K+ + + E+ E L LV +S A L D+ G IGL++AV+ ++ RG KF
Sbjct: 19 KSLQLRNELLEYYLPLVRKVSAAMSLKLPTHLSREDIEGYGIIGLIEAVETYDQNRGVKF 78
Query: 1244 STYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKM 1303
+YA+ IR AI + Q +P + + I K++ +L G E +A ++
Sbjct: 79 ESYASLKIRAAIIDELRKQNF---LPRSVWDKIKKVTTSEEMLLNALGEEVPVEKVAEQL 135
Query: 1304 EMPEEKIRKIMKIA--KEPVSMESPVGDDEDSHLGDF--IEDENMLAPSDAALNASMRSV 1359
+ + KI + K +S++ + D E S + F + D+ +P + L
Sbjct: 136 GVSVSDVLKIKTLIALKNHLSLDEII-DPEGS-VDRFAGLADDEKYSPENKFLKRVEIEE 193
Query: 1360 VKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
+++ L L+ RE +L++ + E+S L+E+ D++ R+ QI +KAL KLR
Sbjct: 194 LREALKRLSDRERLILQLFYVEELS----LKEIAAVLDISTSRVSQIASKALGKLR 245
>TIGR_CMR|SO_1286 [details] [associations]
symbol:SO_1286 "DNA primase" species:211586 "Shewanella
oneidensis MR-1" [GO:0003896 "DNA primase activity" evidence=ISS]
[GO:0005658 "alpha DNA polymerase:primase complex" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] InterPro:IPR002694 InterPro:IPR006295
InterPro:IPR013173 InterPro:IPR019475 Pfam:PF01807 Pfam:PF08278
Pfam:PF10410 PIRSF:PIRSF002811 SMART:SM00400 SMART:SM00766
InterPro:IPR006171 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003896 GO:GO:0030894
Gene3D:1.10.860.10 InterPro:IPR016136 HOGENOM:HOG000014483
KO:K02316 Gene3D:3.90.580.10 Gene3D:3.90.980.10 InterPro:IPR013264
Pfam:PF13662 Pfam:PF08275 SMART:SM00493 TIGRFAMs:TIGR01391
RefSeq:NP_716908.1 HSSP:P02923 ProteinModelPortal:Q8EHD9 SMR:Q8EHD9
GeneID:1169105 KEGG:son:SO_1286 PATRIC:23522220 OMA:VIDFVME
ProtClustDB:CLSK906182 Uniprot:Q8EHD9
Length = 574
Score = 138 (53.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 26/43 (60%), Positives = 31/43 (72%)
Query: 706 ETPLFHKSNELYGLFEAKNAIGKSGYVLITEGYMDVIGLSQFG 748
ETP+FHK NELYGL+E K VLI EGYMDV+ L+Q+G
Sbjct: 233 ETPIFHKGNELYGLYELKQRHRDPDKVLIVEGYMDVVALAQYG 275
Score = 101 (40.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 757 CFDGDQXXXXXXXXXLEVCL-LYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSK 810
C+DGD+ LE L L DK+ +F+FLP DPDS +RK G F +
Sbjct: 305 CYDGDRAGNEAAWRALETALPLLKPGDKV-RFMFLPQSEDPDSMVRKIGKDPFEQ 358
>TIGR_CMR|CPS_1519 [details] [associations]
symbol:CPS_1519 "motility sigma factor FliA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 ProtClustDB:PRK06986
TIGRFAMs:TIGR02479 RefSeq:YP_268261.1 ProteinModelPortal:Q485K4
STRING:Q485K4 GeneID:3522182 KEGG:cps:CPS_1519 PATRIC:21466245
OMA:YDEWRED BioCyc:CPSY167879:GI48-1600-MONOMER Uniprot:Q485K4
Length = 239
Score = 166 (63.5 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 62/236 (26%), Positives = 110/236 (46%)
Query: 402 KREMTEANLRLVISIAKKYTDR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 458
K + E LV IA R +Q DLIQ G IGL +A + F+ +G F T+A
Sbjct: 13 KAALLEQQTVLVKRIAYHLLARLPASVQVDDLIQSGMIGLFEAANNFDNTKGASFETFAG 72
Query: 459 WWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEE 518
IR A+ I T R VH + IS +Q+ + G + +A K+++ +
Sbjct: 73 IRIRGAMLDEIRRGDWTPR-SVH--KNSRMISEAIKQLEAQLGRDVSDVEVAEKLDISLK 129
Query: 519 KIRKIM-KIAKEPVSMESPVGDDEDS--HLGDFIEDENMLAPSDAALNASMRSVVKDILN 575
+I+ +++ + +G +ED+ D+I D+ P + + + + +
Sbjct: 130 DYHQILSEVSTGKILGIDDLGVNEDAIKPSDDYIGDD----PYQSIERIAFKKGLTQCIK 185
Query: 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLAHDW 631
SL RE+ VL + + E++ L E+G+ DV+ R+ QI ++A+ +L+ W
Sbjct: 186 SLPEREALVLSLYYDEELN----LREIGQVLDVSESRVSQIHSQAMHRLKARMQSW 237
Score = 159 (61.0 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 61/230 (26%), Positives = 109/230 (47%)
Query: 1192 KREMTEANLRLVISIAKKYTDR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 1248
K + E LV IA R +Q DLIQ G IGL +A + F+ +G F T+A
Sbjct: 13 KAALLEQQTVLVKRIAYHLLARLPASVQVDDLIQSGMIGLFEAANNFDNTKGASFETFAG 72
Query: 1249 WWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEE 1308
IR A+ I T R VH + IS +Q+ + G + +A K+++ +
Sbjct: 73 IRIRGAMLDEIRRGDWTPR-SVH--KNSRMISEAIKQLEAQLGRDVSDVEVAEKLDISLK 129
Query: 1309 KIRKIM-KIAKEPVSMESPVGDDEDS--HLGDFIEDENMLAPSDAALNASMRSVVKDILN 1365
+I+ +++ + +G +ED+ D+I D+ P + + + + +
Sbjct: 130 DYHQILSEVSTGKILGIDDLGVNEDAIKPSDDYIGDD----PYQSIERIAFKKGLTQCIK 185
Query: 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
SL RE+ VL + + E++ L E+G+ DV+ R+ QI ++A+ +L+
Sbjct: 186 SLPEREALVLSLYYDEELN----LREIGQVLDVSESRVSQIHSQAMHRLK 231
>UNIPROTKB|Q9K5J6 [details] [associations]
symbol:sigB "RNA polymerase sigma-B factor" species:1392
"Bacillus anthracis" [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IMP] [GO:0016987 "sigma factor activity"
evidence=IMP] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 EMBL:AJ272497
RefSeq:NP_843493.1 RefSeq:YP_017620.1 RefSeq:YP_027202.1
ProteinModelPortal:Q9K5J6 DNASU:1088960
EnsemblBacteria:EBBACT00000009251 EnsemblBacteria:EBBACT00000017740
EnsemblBacteria:EBBACT00000023287 GeneID:1088960 GeneID:2814654
GeneID:2850205 KEGG:ban:BA_0992 KEGG:bar:GBAA_0992 KEGG:bat:BAS0928
HOGENOM:HOG000270270 KO:K03090 OMA:VEQGYEE ProtClustDB:PRK08583
BioCyc:BANT260799:GJAJ-1006-MONOMER
BioCyc:BANT261594:GJ7F-1051-MONOMER InterPro:IPR014288
TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02941 Uniprot:Q9K5J6
Length = 257
Score = 166 (63.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 62/252 (24%), Positives = 114/252 (45%)
Query: 380 PLNDLRDINRKMIAG--EMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIG 437
P N ++ K+IA + + +A+ + + LV SIA +Y+ G D+IQ G +G
Sbjct: 7 PTNLTKEDVIKLIAEFQQNQCGEAQERLVDHYKNLVYSIAYRYSKGGPMHEDIIQVGMLG 66
Query: 438 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQIL 497
L+ A+ +++Y G F +A I I + + D+ I +P + + KI ++
Sbjct: 67 LLGAIRRYDYSIGNAFEPFAIPTIVGEIKKYLRDKTWGIHVPRRIKDLGGKIKLAIEELT 126
Query: 498 QETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIED-ENMLA 556
P IA + + EE++ +IM AK + S E++ G + E++
Sbjct: 127 DHLQRSPKIIEIADHLGLSEEEVLEIMD-AKNNYRVSSLDDVVENASDGSSVARIESVGE 185
Query: 557 PSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616
R V+KDI N L E V+ F ++ T E +G +++ + +I
Sbjct: 186 VEQGYEQTERRLVLKDIFNVLNETEKSVIHYIFEENLNQKDTGERLG----ISQMHVSRI 241
Query: 617 EAKALRKLRPLA 628
+ +A+ KL+ A
Sbjct: 242 KRQAISKLKQAA 253
Score = 164 (62.8 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 61/249 (24%), Positives = 113/249 (45%)
Query: 1170 PLNDLRDINRKMIAG--EMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIG 1227
P N ++ K+IA + + +A+ + + LV SIA +Y+ G D+IQ G +G
Sbjct: 7 PTNLTKEDVIKLIAEFQQNQCGEAQERLVDHYKNLVYSIAYRYSKGGPMHEDIIQVGMLG 66
Query: 1228 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQIL 1287
L+ A+ +++Y G F +A I I + + D+ I +P + + KI ++
Sbjct: 67 LLGAIRRYDYSIGNAFEPFAIPTIVGEIKKYLRDKTWGIHVPRRIKDLGGKIKLAIEELT 126
Query: 1288 QETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIED-ENMLA 1346
P IA + + EE++ +IM AK + S E++ G + E++
Sbjct: 127 DHLQRSPKIIEIADHLGLSEEEVLEIMD-AKNNYRVSSLDDVVENASDGSSVARIESVGE 185
Query: 1347 PSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 1406
R V+KDI N L E V+ F ++ T E +G +++ + +I
Sbjct: 186 VEQGYEQTERRLVLKDIFNVLNETEKSVIHYIFEENLNQKDTGERLG----ISQMHVSRI 241
Query: 1407 EAKALRKLR 1415
+ +A+ KL+
Sbjct: 242 KRQAISKLK 250
>TIGR_CMR|BA_0992 [details] [associations]
symbol:BA_0992 "RNA polymerase sigma-B factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=IMP] [GO:0016987
"sigma factor activity" evidence=IMP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG1191 EMBL:AJ272497 RefSeq:NP_843493.1 RefSeq:YP_017620.1
RefSeq:YP_027202.1 ProteinModelPortal:Q9K5J6 DNASU:1088960
EnsemblBacteria:EBBACT00000009251 EnsemblBacteria:EBBACT00000017740
EnsemblBacteria:EBBACT00000023287 GeneID:1088960 GeneID:2814654
GeneID:2850205 KEGG:ban:BA_0992 KEGG:bar:GBAA_0992 KEGG:bat:BAS0928
HOGENOM:HOG000270270 KO:K03090 OMA:VEQGYEE ProtClustDB:PRK08583
BioCyc:BANT260799:GJAJ-1006-MONOMER
BioCyc:BANT261594:GJ7F-1051-MONOMER InterPro:IPR014288
TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02941 Uniprot:Q9K5J6
Length = 257
Score = 166 (63.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 62/252 (24%), Positives = 114/252 (45%)
Query: 380 PLNDLRDINRKMIAG--EMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIG 437
P N ++ K+IA + + +A+ + + LV SIA +Y+ G D+IQ G +G
Sbjct: 7 PTNLTKEDVIKLIAEFQQNQCGEAQERLVDHYKNLVYSIAYRYSKGGPMHEDIIQVGMLG 66
Query: 438 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQIL 497
L+ A+ +++Y G F +A I I + + D+ I +P + + KI ++
Sbjct: 67 LLGAIRRYDYSIGNAFEPFAIPTIVGEIKKYLRDKTWGIHVPRRIKDLGGKIKLAIEELT 126
Query: 498 QETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIED-ENMLA 556
P IA + + EE++ +IM AK + S E++ G + E++
Sbjct: 127 DHLQRSPKIIEIADHLGLSEEEVLEIMD-AKNNYRVSSLDDVVENASDGSSVARIESVGE 185
Query: 557 PSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616
R V+KDI N L E V+ F ++ T E +G +++ + +I
Sbjct: 186 VEQGYEQTERRLVLKDIFNVLNETEKSVIHYIFEENLNQKDTGERLG----ISQMHVSRI 241
Query: 617 EAKALRKLRPLA 628
+ +A+ KL+ A
Sbjct: 242 KRQAISKLKQAA 253
Score = 164 (62.8 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 61/249 (24%), Positives = 113/249 (45%)
Query: 1170 PLNDLRDINRKMIAG--EMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIG 1227
P N ++ K+IA + + +A+ + + LV SIA +Y+ G D+IQ G +G
Sbjct: 7 PTNLTKEDVIKLIAEFQQNQCGEAQERLVDHYKNLVYSIAYRYSKGGPMHEDIIQVGMLG 66
Query: 1228 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQIL 1287
L+ A+ +++Y G F +A I I + + D+ I +P + + KI ++
Sbjct: 67 LLGAIRRYDYSIGNAFEPFAIPTIVGEIKKYLRDKTWGIHVPRRIKDLGGKIKLAIEELT 126
Query: 1288 QETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIED-ENMLA 1346
P IA + + EE++ +IM AK + S E++ G + E++
Sbjct: 127 DHLQRSPKIIEIADHLGLSEEEVLEIMD-AKNNYRVSSLDDVVENASDGSSVARIESVGE 185
Query: 1347 PSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 1406
R V+KDI N L E V+ F ++ T E +G +++ + +I
Sbjct: 186 VEQGYEQTERRLVLKDIFNVLNETEKSVIHYIFEENLNQKDTGERLG----ISQMHVSRI 241
Query: 1407 EAKALRKLR 1415
+ +A+ KL+
Sbjct: 242 KRQAISKLK 250
>UNIPROTKB|P0AEM6 [details] [associations]
symbol:fliA "RNA polymerase, sigma 28 (sigma F) factor"
species:83333 "Escherichia coli K-12" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016987
"sigma factor activity" evidence=IEA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 EMBL:L36677 EMBL:U18539
PIR:JC4346 RefSeq:NP_416432.3 RefSeq:YP_490179.1
ProteinModelPortal:P0AEM6 SMR:P0AEM6 DIP:DIP-47959N IntAct:P0AEM6
MINT:MINT-1250982 PRIDE:P0AEM6 EnsemblBacteria:EBESCT00000000857
EnsemblBacteria:EBESCT00000000858 EnsemblBacteria:EBESCT00000015311
GeneID:12930662 GeneID:948824 KEGG:ecj:Y75_p1893 KEGG:eco:b1922
PATRIC:32119179 EchoBASE:EB1330 EcoGene:EG11355 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 OMA:TYAITRI ProtClustDB:PRK06986
BioCyc:EcoCyc:EG11355-MONOMER BioCyc:ECOL316407:JW1907-MONOMER
BioCyc:MetaCyc:EG11355-MONOMER Genevestigator:P0AEM6
TIGRFAMs:TIGR02479 Uniprot:P0AEM6
Length = 239
Score = 162 (62.1 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 52/202 (25%), Positives = 101/202 (50%)
Query: 429 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR-IPVHMIETIN 487
DL+Q G IGL+ AV++++ +G F+TYA IR A+ D+ R+ +P +
Sbjct: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAML----DELRSRDWVPRSVRRNAR 98
Query: 488 KISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGD 547
++++ Q+ QE G + +A ++ + R+++ S + + H GD
Sbjct: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNN--SQLFSYDEWREEH-GD 155
Query: 548 FIE----DENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVG 603
IE D P L++++R V + + +L RE VL + + E++ L+E+G
Sbjct: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELN----LKEIG 211
Query: 604 KQFDVTRERIRQIEAKALRKLR 625
+V R+ Q+ ++A+++LR
Sbjct: 212 AVLEVGESRVSQLHSQAIKRLR 233
Score = 162 (62.1 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 52/202 (25%), Positives = 101/202 (50%)
Query: 1219 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR-IPVHMIETIN 1277
DL+Q G IGL+ AV++++ +G F+TYA IR A+ D+ R+ +P +
Sbjct: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAML----DELRSRDWVPRSVRRNAR 98
Query: 1278 KISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGD 1337
++++ Q+ QE G + +A ++ + R+++ S + + H GD
Sbjct: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNN--SQLFSYDEWREEH-GD 155
Query: 1338 FIE----DENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVG 1393
IE D P L++++R V + + +L RE VL + + E++ L+E+G
Sbjct: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELN----LKEIG 211
Query: 1394 KQFDVTRERIRQIEAKALRKLR 1415
+V R+ Q+ ++A+++LR
Sbjct: 212 AVLEVGESRVSQLHSQAIKRLR 233
>UNIPROTKB|Q9KQD4 [details] [associations]
symbol:VC_2066 "RNA polymerase sigma factor for flagellar
operon FliA" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:D82123
RefSeq:NP_231698.1 ProteinModelPortal:Q9KQD4 DNASU:2613446
GeneID:2613446 KEGG:vch:VC2066 PATRIC:20083166 OMA:DSFWGYG
Uniprot:Q9KQD4
Length = 244
Score = 160 (61.4 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 55/205 (26%), Positives = 101/205 (49%)
Query: 429 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 488
DLIQ G +GL++A ++ +G F TYA IR A+ + D R +P + + +
Sbjct: 46 DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVPRSVHKHNRE 102
Query: 489 ISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKI-MKI-AKEPVSMESPVGDDEDSHLG 546
IS+ + E +P + +A + M E+ + M I V +E +G +D+ +
Sbjct: 103 ISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIED-LGVSDDA-IS 160
Query: 547 DFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQF 606
F E E+ +P S R + + + SL RE+ VL + + E++ L+E+G+
Sbjct: 161 PFEEGEDN-SPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKEIGEVL 215
Query: 607 DVTRERIRQIEAKALRKLRPLAHDW 631
V+ R+ QI ++++++LR W
Sbjct: 216 GVSESRVSQILSQSMQRLRTKLSSW 240
Score = 154 (59.3 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 54/199 (27%), Positives = 100/199 (50%)
Query: 1219 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 1278
DLIQ G +GL++A ++ +G F TYA IR A+ + D R +P + + +
Sbjct: 46 DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVPRSVHKHNRE 102
Query: 1279 ISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKI-MKI-AKEPVSMESPVGDDEDSHLG 1336
IS+ + E +P + +A + M E+ + M I V +E +G +D+ +
Sbjct: 103 ISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIED-LGVSDDA-IS 160
Query: 1337 DFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQF 1396
F E E+ +P S R + + + SL RE+ VL + + E++ L+E+G+
Sbjct: 161 PFEEGEDN-SPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKEIGEVL 215
Query: 1397 DVTRERIRQIEAKALRKLR 1415
V+ R+ QI ++++++LR
Sbjct: 216 GVSESRVSQILSQSMQRLR 234
>TIGR_CMR|VC_2066 [details] [associations]
symbol:VC_2066 "RNA polymerase sigma factor for flagellar
operon FliA" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:D82123
RefSeq:NP_231698.1 ProteinModelPortal:Q9KQD4 DNASU:2613446
GeneID:2613446 KEGG:vch:VC2066 PATRIC:20083166 OMA:DSFWGYG
Uniprot:Q9KQD4
Length = 244
Score = 160 (61.4 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 55/205 (26%), Positives = 101/205 (49%)
Query: 429 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 488
DLIQ G +GL++A ++ +G F TYA IR A+ + D R +P + + +
Sbjct: 46 DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVPRSVHKHNRE 102
Query: 489 ISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKI-MKI-AKEPVSMESPVGDDEDSHLG 546
IS+ + E +P + +A + M E+ + M I V +E +G +D+ +
Sbjct: 103 ISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIED-LGVSDDA-IS 160
Query: 547 DFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQF 606
F E E+ +P S R + + + SL RE+ VL + + E++ L+E+G+
Sbjct: 161 PFEEGEDN-SPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKEIGEVL 215
Query: 607 DVTRERIRQIEAKALRKLRPLAHDW 631
V+ R+ QI ++++++LR W
Sbjct: 216 GVSESRVSQILSQSMQRLRTKLSSW 240
Score = 154 (59.3 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 54/199 (27%), Positives = 100/199 (50%)
Query: 1219 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 1278
DLIQ G +GL++A ++ +G F TYA IR A+ + D R +P + + +
Sbjct: 46 DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVPRSVHKHNRE 102
Query: 1279 ISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKI-MKI-AKEPVSMESPVGDDEDSHLG 1336
IS+ + E +P + +A + M E+ + M I V +E +G +D+ +
Sbjct: 103 ISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIED-LGVSDDA-IS 160
Query: 1337 DFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQF 1396
F E E+ +P S R + + + SL RE+ VL + + E++ L+E+G+
Sbjct: 161 PFEEGEDN-SPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKEIGEVL 215
Query: 1397 DVTRERIRQIEAKALRKLR 1415
V+ R+ QI ++++++LR
Sbjct: 216 GVSESRVSQILSQSMQRLR 234
>TIGR_CMR|CHY_2056 [details] [associations]
symbol:CHY_2056 "RNA polymerase sigma-E factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK08301
TIGRFAMs:TIGR02835 RefSeq:YP_360875.1 ProteinModelPortal:Q3AAF9
STRING:Q3AAF9 GeneID:3727807 KEGG:chy:CHY_2056 PATRIC:21277193
OMA:ERQETTI BioCyc:CHYD246194:GJCN-2055-MONOMER Uniprot:Q3AAF9
Length = 237
Score = 154 (59.3 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 44/128 (34%), Positives = 71/128 (55%)
Query: 401 AKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 460
AK + E NLRLV+ IA+K+ + G+ DL+ G IGL+KAV+ F + K +TYA+
Sbjct: 56 AKSTLIERNLRLVVYIARKFENTGVNIEDLVSIGTIGLIKAVNTFNPEKKIKLATYASRC 115
Query: 461 IRQAITRSIADQARTIRIPVHMIETINKISRISRQILQET-GSEPDPSVIAIKMEMPEEK 519
I I + ++ IR+ V E +N + +L + G+E D I K+ M +E
Sbjct: 116 IENEILMYLRRNSK-IRLEVSFDEPLNVDWDGNELLLSDVLGTEGD---IIYKV-MEDEV 170
Query: 520 IRKIMKIA 527
+K++K+A
Sbjct: 171 EKKLLKVA 178
Score = 154 (59.3 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 44/128 (34%), Positives = 71/128 (55%)
Query: 1191 AKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 1250
AK + E NLRLV+ IA+K+ + G+ DL+ G IGL+KAV+ F + K +TYA+
Sbjct: 56 AKSTLIERNLRLVVYIARKFENTGVNIEDLVSIGTIGLIKAVNTFNPEKKIKLATYASRC 115
Query: 1251 IRQAITRSIADQARTIRIPVHMIETINKISRISRQILQET-GSEPDPSVIAIKMEMPEEK 1309
I I + ++ IR+ V E +N + +L + G+E D I K+ M +E
Sbjct: 116 IENEILMYLRRNSK-IRLEVSFDEPLNVDWDGNELLLSDVLGTEGD---IIYKV-MEDEV 170
Query: 1310 IRKIMKIA 1317
+K++K+A
Sbjct: 171 EKKLLKVA 178
>TIGR_CMR|CBU_1595 [details] [associations]
symbol:CBU_1595 "DNA primase" species:227377 "Coxiella
burnetii RSA 493" [GO:0003896 "DNA primase activity" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] InterPro:IPR002694 InterPro:IPR006295
InterPro:IPR013173 InterPro:IPR019475 Pfam:PF01807 Pfam:PF08278
Pfam:PF10410 PIRSF:PIRSF002811 SMART:SM00400 SMART:SM00766
InterPro:IPR006171 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003896 GO:GO:0030894
Gene3D:1.10.860.10 InterPro:IPR016136 HOGENOM:HOG000014483
KO:K02316 Gene3D:3.90.580.10 Gene3D:3.90.980.10 InterPro:IPR013264
Pfam:PF13662 Pfam:PF08275 SMART:SM00493 TIGRFAMs:TIGR01391
RefSeq:NP_820578.2 PRIDE:Q83BB7 GeneID:1209505 KEGG:cbu:CBU_1595
PATRIC:17931955 OMA:EDMIARR ProtClustDB:CLSK914890
BioCyc:CBUR227377:GJ7S-1574-MONOMER Uniprot:Q83BB7
Length = 572
Score = 114 (45.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 25/43 (58%), Positives = 26/43 (60%)
Query: 706 ETPLFHKSNELYGLFEAKNAIGKSGYVLITEGYMDVIGLSQFG 748
ETPLF K NELYGL EA LI EGYMDV+ L Q G
Sbjct: 247 ETPLFQKGNELYGLHEACKTHRPLPRALIVEGYMDVVSLHQHG 289
Score = 97 (39.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 22/55 (40%), Positives = 26/55 (47%)
Query: 757 CFDGDQXXXXXXXXXLEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKK 811
CFDGD L L + I+FLFLP DPDS I+K G + F K
Sbjct: 319 CFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDSLIQKIGREAFENK 373
Score = 44 (20.5 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 24/104 (23%), Positives = 47/104 (45%)
Query: 1296 PSVIAIKMEM--PEEKIRKIMKIAKEPVSMES-PVGDDEDSHLGDFIEDENMLAPSDAAL 1352
PS++++ +M P+ + +I +AK + ++ PV + + L E + L AA
Sbjct: 470 PSLVSVIQDMTIPKSEDPQIQFLAKMVLFLKKRPVANTGEL-LAFCPESQRRLLAQLAAY 528
Query: 1353 NASMR-----SVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEE 1391
+ + +KD +N L + K + I+ S TL+E
Sbjct: 529 KTGLSEDDLAAELKDAINRLHEQHQKEEAFQALIKASHKETLDE 572
>UNIPROTKB|Q48GG2 [details] [associations]
symbol:fliA "RNA polymerase sigma factor for flagellar
operon" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861
GO:GO:0006355 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000058
GenomeReviews:CP000058_GR GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 ProtClustDB:PRK06986
TIGRFAMs:TIGR02479 RefSeq:YP_275521.1 ProteinModelPortal:Q48GG2
STRING:Q48GG2 GeneID:3558449 KEGG:psp:PSPPH_3363 PATRIC:19976132
OMA:FIERYSV Uniprot:Q48GG2
Length = 239
Score = 148 (57.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 61/241 (25%), Positives = 107/241 (44%)
Query: 398 ARKAKREMTEANLRLVISIAKKYTDR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 454
+R ++ E+ E LV IA R +Q DLIQ G IGL++ K++ +G F
Sbjct: 6 SRNSQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDSTKGASFE 65
Query: 455 TYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKME 514
TYA IR A+ + R VH +S R I +TG + +A +++
Sbjct: 66 TYAGIRIRGAMLDEVRKGDWAPR-SVH--RNTRMVSDAIRAIEAKTGRDAKDHEVAAELQ 122
Query: 515 MPEEKIRKIMK--IAKEPVSMESPVGDDEDSHLGDFIED--ENMLAPSDAALNASMRSVV 570
+ + I+ + S + + D + H G ED L PS + ++ +
Sbjct: 123 LSLDDYYGILNDTLGSRLFSFDDLLQDGD--HEG-LHEDGASGSLEPSRDLEDERFQAAL 179
Query: 571 KDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLAHD 630
D + +L RE VL + + E++ L+E+G+ V+ R+ Q+ ++ +LR +
Sbjct: 180 ADAIANLPERERLVLALYYDEELN----LKEIGEVLGVSESRVSQLHSQCAARLRGRLGE 235
Query: 631 W 631
W
Sbjct: 236 W 236
Score = 142 (55.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 60/235 (25%), Positives = 105/235 (44%)
Query: 1188 ARKAKREMTEANLRLVISIAKKYTDR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 1244
+R ++ E+ E LV IA R +Q DLIQ G IGL++ K++ +G F
Sbjct: 6 SRNSQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDSTKGASFE 65
Query: 1245 TYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKME 1304
TYA IR A+ + R VH +S R I +TG + +A +++
Sbjct: 66 TYAGIRIRGAMLDEVRKGDWAPR-SVH--RNTRMVSDAIRAIEAKTGRDAKDHEVAAELQ 122
Query: 1305 MPEEKIRKIMK--IAKEPVSMESPVGDDEDSHLGDFIED--ENMLAPSDAALNASMRSVV 1360
+ + I+ + S + + D + H G ED L PS + ++ +
Sbjct: 123 LSLDDYYGILNDTLGSRLFSFDDLLQDGD--HEG-LHEDGASGSLEPSRDLEDERFQAAL 179
Query: 1361 KDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
D + +L RE VL + + E++ L+E+G+ V+ R+ Q+ ++ +LR
Sbjct: 180 ADAIANLPERERLVLALYYDEELN----LKEIGEVLGVSESRVSQLHSQCAARLR 230
>UNIPROTKB|Q884V7 [details] [associations]
symbol:fliA "Motility sigma factor FliA" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016853
GenomeReviews:AE016853_GR GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 ProtClustDB:PRK06986
TIGRFAMs:TIGR02479 HSSP:P00579 OMA:FIERYSV RefSeq:NP_791802.1
ProteinModelPortal:Q884V7 GeneID:1183624 KEGG:pst:PSPTO_1979
PATRIC:19995230 BioCyc:PSYR223283:GJIX-2019-MONOMER Uniprot:Q884V7
Length = 246
Score = 148 (57.2 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 61/241 (25%), Positives = 107/241 (44%)
Query: 398 ARKAKREMTEANLRLVISIAKKYTDR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 454
+R ++ E+ E LV IA R +Q DLIQ G IGL++ K++ +G F
Sbjct: 13 SRNSQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDSTKGASFE 72
Query: 455 TYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKME 514
TYA IR A+ + R VH +S R I +TG + +A +++
Sbjct: 73 TYAGIRIRGAMLDEVRKGDWAPR-SVH--RNTRMVSDAIRAIEAKTGRDAKDHEVAAELQ 129
Query: 515 MPEEKIRKIMK--IAKEPVSMESPVGDDEDSHLGDFIED--ENMLAPSDAALNASMRSVV 570
+ + I+ + S + + D + H G ED L PS + ++ +
Sbjct: 130 LSLDDYYGILNDTLGSRLFSFDDLLQDGD--HEG-LHEDGASGSLEPSRDLEDERFQAAL 186
Query: 571 KDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRPLAHD 630
D + +L RE VL + + E++ L+E+G+ V+ R+ Q+ ++ +LR +
Sbjct: 187 ADAIANLPERERLVLALYYDEELN----LKEIGEVLGVSESRVSQLHSQCAARLRGRLGE 242
Query: 631 W 631
W
Sbjct: 243 W 243
Score = 142 (55.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 60/235 (25%), Positives = 105/235 (44%)
Query: 1188 ARKAKREMTEANLRLVISIAKKYTDR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 1244
+R ++ E+ E LV IA R +Q DLIQ G IGL++ K++ +G F
Sbjct: 13 SRNSQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDSTKGASFE 72
Query: 1245 TYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKME 1304
TYA IR A+ + R VH +S R I +TG + +A +++
Sbjct: 73 TYAGIRIRGAMLDEVRKGDWAPR-SVH--RNTRMVSDAIRAIEAKTGRDAKDHEVAAELQ 129
Query: 1305 MPEEKIRKIMK--IAKEPVSMESPVGDDEDSHLGDFIED--ENMLAPSDAALNASMRSVV 1360
+ + I+ + S + + D + H G ED L PS + ++ +
Sbjct: 130 LSLDDYYGILNDTLGSRLFSFDDLLQDGD--HEG-LHEDGASGSLEPSRDLEDERFQAAL 186
Query: 1361 KDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
D + +L RE VL + + E++ L+E+G+ V+ R+ Q+ ++ +LR
Sbjct: 187 ADAIANLPERERLVLALYYDEELN----LKEIGEVLGVSESRVSQLHSQCAARLR 237
>TIGR_CMR|CPS_4335 [details] [associations]
symbol:CPS_4335 "DNA primase" species:167879 "Colwellia
psychrerythraea 34H" [GO:0003896 "DNA primase activity"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] InterPro:IPR002694 InterPro:IPR006295
InterPro:IPR013173 InterPro:IPR019475 Pfam:PF01807 Pfam:PF08278
Pfam:PF10410 PIRSF:PIRSF002811 SMART:SM00400 SMART:SM00766
InterPro:IPR006171 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003896 GO:GO:0030894
Gene3D:1.10.860.10 InterPro:IPR016136 eggNOG:COG0358
HOGENOM:HOG000014483 KO:K02316 Gene3D:3.90.580.10
Gene3D:3.90.980.10 InterPro:IPR013264 Pfam:PF13662 Pfam:PF08275
SMART:SM00493 TIGRFAMs:TIGR01391 OMA:VGRYHCF RefSeq:YP_270984.1
ProteinModelPortal:Q47W38 SMR:Q47W38 STRING:Q47W38 GeneID:3522342
KEGG:cps:CPS_4335 PATRIC:21471515
BioCyc:CPSY167879:GI48-4344-MONOMER Uniprot:Q47W38
Length = 585
Score = 116 (45.9 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 692 GISGFLLTTPDPVH----ETPLFHKSNELYGLFEAKNAIGKSGYVLITEGYMDVIGLSQF 747
G G +L P + ET ++HK ELYGL EAK A + +++ EGYMDV+ L+Q
Sbjct: 224 GFGGRVLGDEKPKYLNSPETRVYHKGQELYGLHEAKQANKQLKRLIVVEGYMDVVALAQH 283
Query: 748 G 748
G
Sbjct: 284 G 284
Score = 91 (37.1 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 757 CFDGDQXXXXXXXXXLEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIF 808
C+DGD+ +E L D +KF+FLPD DPDS I G + F
Sbjct: 314 CYDGDRAGRDAAWRAMENALPLIRDGFSLKFVFLPDGEDPDSLIGTQGQQAF 365
>TIGR_CMR|BA_4566 [details] [associations]
symbol:BA_4566 "RNA polymerase sigma-27 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
RefSeq:NP_846788.1 RefSeq:YP_021211.1 RefSeq:YP_030484.1
ProteinModelPortal:P62182 DNASU:1088335
EnsemblBacteria:EBBACT00000010179 EnsemblBacteria:EBBACT00000016313
EnsemblBacteria:EBBACT00000019367 GeneID:1088335 GeneID:2818972
GeneID:2852916 KEGG:ban:BA_4566 KEGG:bar:GBAA_4566 KEGG:bat:BAS4236
HOGENOM:HOG000270274 KO:K03091 OMA:WWIRESI ProtClustDB:PRK05803
BioCyc:BANT260799:GJAJ-4292-MONOMER
BioCyc:BANT261594:GJ7F-4441-MONOMER TIGRFAMs:TIGR02846
Uniprot:P62182
Length = 237
Score = 142 (55.0 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 50/156 (32%), Positives = 76/156 (48%)
Query: 379 LPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGL 438
L +D R M G+ +AR + E NLRLV I KK+ + G DLI G IGL
Sbjct: 30 LSSDDERKYLELMEQGDAQARNL---LIEHNLRLVAHIVKKFENTGEDAEDLISIGTIGL 86
Query: 439 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART-----IRIPVHMIETINKISRIS 493
+KA++ + +G K +TYA I I + +T + P+ + N+IS I
Sbjct: 87 IKAIESYSAGKGTKLATYAARCIENEILMHLRVLKKTKKDVSLHDPIGQDKEGNEISLID 146
Query: 494 RQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKE 529
IL+ SE + + I++ M EKI++ + I E
Sbjct: 147 --ILK---SESEDVIDMIQLSMELEKIKEYIDILDE 177
Score = 142 (55.0 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 50/156 (32%), Positives = 76/156 (48%)
Query: 1169 LPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGL 1228
L +D R M G+ +AR + E NLRLV I KK+ + G DLI G IGL
Sbjct: 30 LSSDDERKYLELMEQGDAQARNL---LIEHNLRLVAHIVKKFENTGEDAEDLISIGTIGL 86
Query: 1229 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART-----IRIPVHMIETINKISRIS 1283
+KA++ + +G K +TYA I I + +T + P+ + N+IS I
Sbjct: 87 IKAIESYSAGKGTKLATYAARCIENEILMHLRVLKKTKKDVSLHDPIGQDKEGNEISLID 146
Query: 1284 RQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKE 1319
IL+ SE + + I++ M EKI++ + I E
Sbjct: 147 --ILK---SESEDVIDMIQLSMELEKIKEYIDILDE 177
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/108 (26%), Positives = 59/108 (54%)
Query: 1312 KIMKIAKEPVSMESPVGDDEDSH---LGDFIEDENMLAPSDAALNASMRSVVKDILNSLT 1368
+++K K+ VS+ P+G D++ + L D ++ E+ L+ + + K+ ++ L
Sbjct: 118 RVLKKTKKDVSLHDPIGQDKEGNEISLIDILKSESEDVIDMIQLSMELEKI-KEYIDILD 176
Query: 1369 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 1416
RE +V+ RFG+ + + T E+ K ++R + +IE +AL K+ H
Sbjct: 177 EREKEVIVKRFGLGLDKEKTQREIAKALGISRSYVSRIEKRALMKMFH 224
Score = 128 (50.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 28/106 (26%), Positives = 58/106 (54%)
Query: 522 KIMKIAKEPVSMESPVGDDEDSH---LGDFIEDENMLAPSDAALNASMRSVVKDILNSLT 578
+++K K+ VS+ P+G D++ + L D ++ E+ L+ + + K+ ++ L
Sbjct: 118 RVLKKTKKDVSLHDPIGQDKEGNEISLIDILKSESEDVIDMIQLSMELEKI-KEYIDILD 176
Query: 579 PRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKL 624
RE +V+ RFG+ + + T E+ K ++R + +IE +AL K+
Sbjct: 177 EREKEVIVKRFGLGLDKEKTQREIAKALGISRSYVSRIEKRALMKM 222
Score = 44 (20.5 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 782 DKIIKFLFLPDKYDPDSYIRKFGYKIFSKKN----AFSFDIKSN--SREEIENLRKKFKI 835
+KI +++ + D+ + + +++FG + +K A + I + SR E L K F
Sbjct: 166 EKIKEYIDILDEREKEVIVKRFGLGLDKEKTQREIAKALGISRSYVSRIEKRALMKMFHE 225
Query: 836 LIKLGKER 843
++ KE+
Sbjct: 226 FVRAEKEK 233
>TIGR_CMR|GSU_3053 [details] [associations]
symbol:GSU_3053 "RNA polymerase sigma factor for flagellar
operon" species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716 GO:GO:0019861
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HOGENOM:HOG000270271 KO:K02405 OMA:TYAITRI
TIGRFAMs:TIGR02479 RefSeq:NP_954095.1 ProteinModelPortal:Q748E9
GeneID:2686906 KEGG:gsu:GSU3053 PATRIC:22028957
ProtClustDB:CLSK829077 BioCyc:GSUL243231:GH27-2993-MONOMER
Uniprot:Q748E9
Length = 250
Score = 145 (56.1 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 48/201 (23%), Positives = 95/201 (47%)
Query: 429 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 488
DL+ IGL+ A ++F+ RG +F T+A IR I + Q R + + K
Sbjct: 50 DLMSAAIIGLITAAERFDPTRGVQFKTFAEQRIRGTIIDELRSQDWLTR---SLRDKFKK 106
Query: 489 ISRISRQILQETGSEPDPSVIAIKMEMP-EEKIRKIMKI-AKEPVSMESPVGDDEDSHLG 546
+ + + + G P +A ++M +E + + +I VS++ DD+ S G
Sbjct: 107 LEKEFVLLEHQLGRNPTSEEVATALKMSVDEYYQMLEEIHLLSFVSLDESWEDDDGSPFG 166
Query: 547 --DFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGK 604
D + D ++ P + M + + + SL +E V+ + + E++ L+E+G
Sbjct: 167 LLDILADTSIENPQSQLMARQMLDSLTESIESLPEKERLVITLYYYEELN----LKEIGA 222
Query: 605 QFDVTRERIRQIEAKALRKLR 625
+++ RI Q+ ++A+ +LR
Sbjct: 223 VLELSESRISQLHSQAIVRLR 243
Score = 145 (56.1 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 48/201 (23%), Positives = 95/201 (47%)
Query: 1219 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 1278
DL+ IGL+ A ++F+ RG +F T+A IR I + Q R + + K
Sbjct: 50 DLMSAAIIGLITAAERFDPTRGVQFKTFAEQRIRGTIIDELRSQDWLTR---SLRDKFKK 106
Query: 1279 ISRISRQILQETGSEPDPSVIAIKMEMP-EEKIRKIMKI-AKEPVSMESPVGDDEDSHLG 1336
+ + + + G P +A ++M +E + + +I VS++ DD+ S G
Sbjct: 107 LEKEFVLLEHQLGRNPTSEEVATALKMSVDEYYQMLEEIHLLSFVSLDESWEDDDGSPFG 166
Query: 1337 --DFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGK 1394
D + D ++ P + M + + + SL +E V+ + + E++ L+E+G
Sbjct: 167 LLDILADTSIENPQSQLMARQMLDSLTESIESLPEKERLVITLYYYEELN----LKEIGA 222
Query: 1395 QFDVTRERIRQIEAKALRKLR 1415
+++ RI Q+ ++A+ +LR
Sbjct: 223 VLELSESRISQLHSQAIVRLR 243
>TIGR_CMR|SO_3210 [details] [associations]
symbol:SO_3210 "RNA polymerase sigma-27 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HOGENOM:HOG000270271 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:P00579
RefSeq:NP_718765.1 ProteinModelPortal:Q8ECD3 GeneID:1170903
KEGG:son:SO_3210 PATRIC:23526104 OMA:PHESEIA Uniprot:Q8ECD3
Length = 237
Score = 140 (54.3 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 60/237 (25%), Positives = 109/237 (45%)
Query: 402 KREMTEANLRLVISIAKKYTDR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 458
K + E LV IA R +Q DL+Q G +GL++A KF+ +G KF T+A
Sbjct: 13 KTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFAG 72
Query: 459 WWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEE 518
IR A+ I R +P + +I++ ++ Q G + + IA K++M +
Sbjct: 73 IRIRGAMLDEIR---RGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMTLD 129
Query: 519 KIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLT 578
+ I+ VS+ +G ++ LG E++L SD + + + + +S
Sbjct: 130 EYHHILN----DVSVGKIIGIED---LG---VSEDILTTSDNVSDGTFEVLAETQFHSAL 179
Query: 579 PRESKVLRMRFGIEMSSDH----TLEEVGKQFDVTRERIRQIEAKALRKLRPLAHDW 631
K+L R + +S + L+E+G +V+ R+ QI ++A+ +L+ W
Sbjct: 180 VEAIKILPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKLKQW 236
Score = 135 (52.6 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 59/231 (25%), Positives = 108/231 (46%)
Query: 1192 KREMTEANLRLVISIAKKYTDR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 1248
K + E LV IA R +Q DL+Q G +GL++A KF+ +G KF T+A
Sbjct: 13 KTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFAG 72
Query: 1249 WWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEE 1308
IR A+ I R +P + +I++ ++ Q G + + IA K++M +
Sbjct: 73 IRIRGAMLDEIR---RGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMTLD 129
Query: 1309 KIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLT 1368
+ I+ VS+ +G ++ LG E++L SD + + + + +S
Sbjct: 130 EYHHILN----DVSVGKIIGIED---LG---VSEDILTTSDNVSDGTFEVLAETQFHSAL 179
Query: 1369 PRESKVLRMRFGIEMSSDH----TLEEVGKQFDVTRERIRQIEAKALRKLR 1415
K+L R + +S + L+E+G +V+ R+ QI ++A+ +L+
Sbjct: 180 VEAIKILPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLK 230
>TIGR_CMR|BA_4043 [details] [associations]
symbol:BA_4043 "RNA polymerase sigma-29 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 RefSeq:NP_846283.1
RefSeq:YP_020685.1 RefSeq:YP_030006.1 ProteinModelPortal:P62177
DNASU:1086623 EnsemblBacteria:EBBACT00000012093
EnsemblBacteria:EBBACT00000017203 EnsemblBacteria:EBBACT00000022798
GeneID:1086623 GeneID:2816772 GeneID:2850034 KEGG:ban:BA_4043
KEGG:bar:GBAA_4043 KEGG:bat:BAS3755 OMA:LIMELRF
ProtClustDB:PRK08301 BioCyc:BANT260799:GJAJ-3813-MONOMER
BioCyc:BANT261594:GJ7F-3931-MONOMER TIGRFAMs:TIGR02835
Uniprot:P62177
Length = 239
Score = 131 (51.2 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 42/136 (30%), Positives = 65/136 (47%)
Query: 390 KMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRR 449
K+ G+ AR + E NLRLV+ IA+K+ + G+ DLI G IGL+KAV+ F +
Sbjct: 50 KLPKGDQAARSL---LIERNLRLVVYIARKFENTGINIEDLISIGTIGLIKAVNTFNPEK 106
Query: 450 GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVI 509
K +TYA+ I I + + R V E +N I ++L D +I
Sbjct: 107 KIKLATYASRCIENEILMHLRRNNKN-RSEVSFDEPLN-IDWDGNELLLSDVLGTDDDII 164
Query: 510 AIKMEMPEEKIRKIMK 525
+E ++ +MK
Sbjct: 165 TKDLEATVDR-HLLMK 179
Score = 131 (51.2 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 42/136 (30%), Positives = 65/136 (47%)
Query: 1180 KMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRR 1239
K+ G+ AR + E NLRLV+ IA+K+ + G+ DLI G IGL+KAV+ F +
Sbjct: 50 KLPKGDQAARSL---LIERNLRLVVYIARKFENTGINIEDLISIGTIGLIKAVNTFNPEK 106
Query: 1240 GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVI 1299
K +TYA+ I I + + R V E +N I ++L D +I
Sbjct: 107 KIKLATYASRCIENEILMHLRRNNKN-RSEVSFDEPLN-IDWDGNELLLSDVLGTDDDII 164
Query: 1300 AIKMEMPEEKIRKIMK 1315
+E ++ +MK
Sbjct: 165 TKDLEATVDR-HLLMK 179
>UNIPROTKB|E1BJ15 [details] [associations]
symbol:CEP290 "Centrosomal protein of 290 kDa" species:9913
"Bos taurus" [GO:0060041 "retina development in camera-type eye"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0042384 "cilium assembly"
evidence=IEA] [GO:0036038 "TCTN-B9D complex" evidence=IEA]
[GO:0032391 "photoreceptor connecting cilium" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0009986 "cell
surface" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000930 "gamma-tubulin complex" evidence=IEA]
InterPro:IPR026201 GO:GO:0005829 GO:GO:0005634 GO:GO:0005813
GO:GO:0045893 GO:GO:0009986 GO:GO:0015031 GO:GO:0060041
GO:GO:0036038 GO:GO:0042384 GeneTree:ENSGT00700000104127
GO:GO:0000930 GO:GO:0032391 PANTHER:PTHR18879 OMA:IVAENER
EMBL:DAAA02012650 EMBL:DAAA02012651 IPI:IPI00703782 PRIDE:E1BJ15
Ensembl:ENSBTAT00000005450 ArrayExpress:E1BJ15 Uniprot:E1BJ15
Length = 2475
Score = 81 (33.6 bits), Expect = 3.1e-05, Sum P(7) = 3.1e-05
Identities = 46/176 (26%), Positives = 85/176 (48%)
Query: 487 NKISRISRQILQETGSEPDPSV-IAIKMEMPEEKIRKIMKIAKEPV----SMESPVGDDE 541
++I R +++ + TGS PDPS+ I ++E+ KI++ ++I E S+E + + E
Sbjct: 1420 SEILREAQKFEEATGSMPDPSLPIPNQLEIALRKIKENIRIILETQATCRSLEEKLREKE 1479
Query: 542 DSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLR--MRFGIEMSSDHTL 599
S L + +EN+L+ D +N +R + T + K+L R +E S HTL
Sbjct: 1480 -SALR--LAEENILS-RDKVIN-ELR-----LRLPATAEQEKLLAEFSRKEVEPKSHHTL 1529
Query: 600 EEVGKQFDVTRERIRQIEAKALRKLRPLAHDWLEQRTHQNEKIIACSSDSSNHNEH 655
+ + + R+ Q E + L+K + L LE+ + +I+ + H H
Sbjct: 1530 KLAHQTIANMQARLNQKE-EVLKKYQHL----LEKAREEQREIVK-KHEEELHTLH 1579
Score = 74 (31.1 bits), Expect = 3.1e-05, Sum P(7) = 3.1e-05
Identities = 48/192 (25%), Positives = 76/192 (39%)
Query: 1052 EKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKC 1111
+KE + +S ++ +N +E+L L + Q + + +LE+
Sbjct: 1692 QKESQSLKSELQTQKE-ANSRAPTTTMRNLVERLKSQLALKEKQQKALSRALLELRAEMT 1750
Query: 1112 GMPRLHFIKVFPENEINLNW---VDNETKIQHDYNLILCRNIPSIKELQQKLINLQTDIV 1168
I + + E NLN VD TK L NI +KE + N + +
Sbjct: 1751 AAAEERIISMTSQKEANLNVQQIVDRHTKELKSQIEDLNENILKLKEALKTSKNRENTLT 1810
Query: 1169 LPLNDL-RDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLI--QEGN 1225
LNDL ++ K A K + K + + N L I K+ T GLQ LI ++
Sbjct: 1811 DNLNDLTNELQNKQKAYG-KVLREKDAVDQENNELKRQI-KRLTS-GLQGKPLIDNKQSL 1867
Query: 1226 IG-LMKAVDKFE 1236
I L K + K E
Sbjct: 1868 IEELQKKIKKLE 1879
Score = 67 (28.6 bits), Expect = 3.1e-05, Sum P(7) = 3.1e-05
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 127 RTKDPIKMYMREMGSVELLTRDGE-IEIAKRIEE------GLKDMIHAISSCPTTIM--- 176
RTK+ + E+ + +D E +E KR+++ GL+D + I +C I
Sbjct: 413 RTKEAERT--AELAEADAREKDKELVETLKRLKDYESGVYGLEDAVIEIKNCKNQIKIRD 470
Query: 177 -EILIAADKISKNEIKIDEIVD 197
EI + +I+K E+KI++ +D
Sbjct: 471 REIEVLTKEINKLELKINDFLD 492
Score = 62 (26.9 bits), Expect = 3.1e-05, Sum P(7) = 3.1e-05
Identities = 32/162 (19%), Positives = 73/162 (45%)
Query: 1251 IRQAITRSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAI---KMEMPE 1307
++Q + ++ + R + + + I + + E G + + V+ + ++E +
Sbjct: 2290 LKQLVRQATEREQRVKKYTADLEQQIEILKHVPEGDETEQGLQRELRVLRLANSQLEKEK 2349
Query: 1308 EKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIED-ENMLAPSDAA---LNASMRSVVKDI 1363
E++ ++I+K+ +S + + HL + I+D E L SD L ++ + K++
Sbjct: 2350 EELIHRIEISKDQNGPDSTISGADPDHLMEKIKDLETQLRTSDMEKQHLKEEIQKLKKEL 2409
Query: 1364 LNSLTP---RESKVLRMRFGIEMSSDHTLEE----VGKQFDV 1398
N P E + L+ + E+ + LEE + +QF V
Sbjct: 2410 EN-FDPSFFEEIEDLKYNYKEEVKKNILLEEKLKKLSEQFGV 2450
Score = 57 (25.1 bits), Expect = 3.1e-05, Sum P(7) = 3.1e-05
Identities = 13/65 (20%), Positives = 31/65 (47%)
Query: 890 MLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEE 949
M + DD + L V D R K+ ++ ++E +++L ++ + K+I+
Sbjct: 1620 MEQTVAEQDDSLSSLVIKLKQVSQDLERQKEITELKIKEFENMKLRLQENHADEVKKIKA 1679
Query: 950 GLKDM 954
++D+
Sbjct: 1680 EVEDL 1684
Score = 55 (24.4 bits), Expect = 0.00036, Sum P(7) = 0.00036
Identities = 17/73 (23%), Positives = 36/73 (49%)
Query: 96 TETLMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAK 155
++ + L N++ + E L + D R++ I + ++ EL +E K
Sbjct: 588 SDFMSLKNMSEEQSKNEFLSRELIEKERDLERSRTVIAKFQNKLK--EL------VEENK 639
Query: 156 RIEEGLKDMIHAI 168
++EEG+K+++ AI
Sbjct: 640 QLEEGMKEILQAI 652
Score = 54 (24.1 bits), Expect = 3.1e-05, Sum P(7) = 3.1e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 246 KFSN--ISFHFDKMRKAFEKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQ- 302
KFS I DK+ K E E NS+ + H ++ N+ L + K +E L TL++
Sbjct: 1279 KFSKTMIQLQNDKL-KIME-EMKNSQ---QEHRSLKNKTLEMELKLKGLEDLISTLKDAR 1333
Query: 303 -----INQVTQIEK-QILEIVVNK 320
I+ T+IE+ ++ E+ +N+
Sbjct: 1334 GAQKVISWHTKIEELRLQELKLNR 1357
Score = 37 (18.1 bits), Expect = 3.1e-05, Sum P(7) = 3.1e-05
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 27 DIKSNSREEIENLRKKFKILIKLGKERGYLTFSEI 61
++KS S+E + +L + + L+K+ + L E+
Sbjct: 39 ELKSESQENMIHLFRITQSLMKMKAQEVELALEEV 73
>MGI|MGI:2384917 [details] [associations]
symbol:Cep290 "centrosomal protein 290" species:10090 "Mus
musculus" [GO:0005515 "protein binding" evidence=IPI] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005813 "centrosome" evidence=ISO;IDA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0005929
"cilium" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0007163 "establishment or maintenance of cell polarity"
evidence=IMP] [GO:0009986 "cell surface" evidence=ISO] [GO:0015031
"protein transport" evidence=IMP] [GO:0030030 "cell projection
organization" evidence=IEA] [GO:0030814 "regulation of cAMP
metabolic process" evidence=IMP] [GO:0032391 "photoreceptor
connecting cilium" evidence=IDA] [GO:0036038 "TCTN-B9D complex"
evidence=IDA] [GO:0042384 "cilium assembly" evidence=IMP]
[GO:0042995 "cell projection" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
[GO:0060271 "cilium morphogenesis" evidence=IMP] InterPro:IPR026201
MGI:MGI:2384917 GO:GO:0005829 GO:GO:0005634 GO:GO:0005813
GO:GO:0045893 GO:GO:0009986 GO:GO:0015031 GO:GO:0006351
GO:GO:0060041 eggNOG:NOG12793 GO:GO:0005932 GO:GO:0036038
GO:GO:0042384 GO:GO:0030902 GO:GO:0000930 GO:GO:0032391 HSSP:Q7ARI1
GO:GO:0048793 CTD:80184 HOGENOM:HOG000111526 HOVERGEN:HBG081077
KO:K16533 PANTHER:PTHR18879 OrthoDB:EOG4DR9BD GO:GO:0042462
GO:GO:0030916 EMBL:AK029960 EMBL:AC153501 EMBL:AK172940
IPI:IPI00762098 IPI:IPI00798578 RefSeq:NP_666121.2
UniGene:Mm.229114 ProteinModelPortal:Q6A078 DIP:DIP-46317N
IntAct:Q6A078 STRING:Q6A078 PhosphoSite:Q6A078 PaxDb:Q6A078
PRIDE:Q6A078 GeneID:216274 KEGG:mmu:216274 UCSC:uc007gxw.2
UCSC:uc011xmr.1 InParanoid:Q6A078 ChiTaRS:CEP290 NextBio:375097
Bgee:Q6A078 CleanEx:MM_CEP290 Genevestigator:Q6A078
GermOnline:ENSMUSG00000019971 Uniprot:Q6A078
Length = 2472
Score = 73 (30.8 bits), Expect = 4.4e-05, Sum P(6) = 4.4e-05
Identities = 40/163 (24%), Positives = 78/163 (47%)
Query: 487 NKISRISRQILQETGSEPDPSV-----IAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDE 541
N+I +++ TGS PDPS+ + I + +E I+ I+K S+E + + E
Sbjct: 1420 NEILSAAQKFEDSTGSMPDPSLPLPNQLEIALRKIKENIQVILKTQATCKSLEEKLKEKE 1479
Query: 542 DSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRM-RFGIEMSSDHTLE 600
S L + ++N+L+ D +N +R ++ L + RE + + R +E S HT++
Sbjct: 1480 -SALR--LAEQNILS-RDKVIN-ELR--LR--LPATADREKLIAELERKELEPKSHHTMK 1530
Query: 601 EVGKQFDVTRERIRQIEAKALRKLRPLAHDWLEQRTHQNEKII 643
+ + R+ E + L+K + L LE+ + +I+
Sbjct: 1531 IAHQTIANMQARLNHKE-EVLKKYQHL----LEKAREEQREIV 1568
Score = 69 (29.3 bits), Expect = 4.4e-05, Sum P(6) = 4.4e-05
Identities = 48/202 (23%), Positives = 80/202 (39%)
Query: 1045 DKMRKAFEKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQI----NQVTQIE 1100
+ +R A + +S+S +K+ E R ++ L D L++Q+ Q +
Sbjct: 1682 EDLRHALAQAHKDSQS-LKSELQAQKEA-NSRAPTTTMRNLVDRLKSQLALKEKQQKALS 1739
Query: 1101 KQILEIVVNKCGMPRLHFIKVFPENEINLNW---VDNETKIQHDYNLILCRNIPSIKELQ 1157
+ +LE+ I V + E NLN V+ T+ L N+ +KE
Sbjct: 1740 RALLELRSEMTAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQIEDLNENLLKLKEAL 1799
Query: 1158 QKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQF 1217
+ N + + LN+L + +K K + K + + N L I K GLQ
Sbjct: 1800 KTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQI--KRLSSGLQS 1857
Query: 1218 LDLI--QEGNIG-LMKAVDKFE 1236
LI ++ I L K V K E
Sbjct: 1858 KTLIDNKQSLIDELQKKVKKLE 1879
Score = 66 (28.3 bits), Expect = 4.4e-05, Sum P(6) = 4.4e-05
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 127 RTKDPIKMYMREMGSVELLTRDGE-IEIAKRIEE------GLKDMIHAISSCPTTIM--- 176
+TK+ ++ E+ + +D E +E KR+++ GL+D + I +C I
Sbjct: 413 KTKEAERI--AELAEADAREKDKELVEALKRLKDYESGVYGLEDAVIEIKNCKAQIKIRD 470
Query: 177 -EILIAADKISKNEIKIDEIVD 197
E+ + +I+K E+KI++I+D
Sbjct: 471 GEMEVLTKEINKLEMKINDILD 492
Score = 66 (28.3 bits), Expect = 4.4e-05, Sum P(6) = 4.4e-05
Identities = 27/119 (22%), Positives = 54/119 (45%)
Query: 246 KFSNISFHFDKMRKAFEKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQ--- 302
KFS + +E NS+ + H N+ N+ L + K +E+L TL++
Sbjct: 1279 KFSKTMIQLQNDKLKIMQEMKNSQ---QEHRNMENKTLELELKLKGLEELISTLKDARGA 1335
Query: 303 ---INQVTQIEK-QILEIVVNK---CGMPRLHFIK-VFPENEINLNWVDNETKIQHDYN 353
IN +IE+ ++ E+ +N+ G + ++ + E E +N ++ E Q ++
Sbjct: 1336 QKVINWHVKIEELRLQELKLNRELVKGKEEIKYLNNIISEYEHTINSLEEEIVQQSKFH 1394
Score = 63 (27.2 bits), Expect = 4.4e-05, Sum P(6) = 4.4e-05
Identities = 14/70 (20%), Positives = 33/70 (47%)
Query: 890 MLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEE 949
M + DD + L V D + K+ ++ +RE + +L ++ K+++
Sbjct: 1620 MEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHASEVKKVKA 1679
Query: 950 GLKDMIHAIS 959
++D+ HA++
Sbjct: 1680 EVEDLRHALA 1689
Score = 60 (26.2 bits), Expect = 0.00016, Sum P(6) = 0.00016
Identities = 18/74 (24%), Positives = 35/74 (47%)
Query: 99 LMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIE 158
+ L+N+ E L+ + D R++ I + ++ EL +E K++E
Sbjct: 591 MSLNNMNETQSKNEFLSRELAEKEKDLERSRTVIAKFQSKLK--EL------VEENKQLE 642
Query: 159 EGLKDMIHAISSCP 172
EG+K+++ AI P
Sbjct: 643 EGMKEILQAIKDMP 656
Score = 52 (23.4 bits), Expect = 4.4e-05, Sum P(6) = 4.4e-05
Identities = 40/175 (22%), Positives = 76/175 (43%)
Query: 1257 RSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKI 1316
++I + +TI + M + + K+ R + Q+ + +G + + KM EE+ R + K
Sbjct: 2119 KTIPELEKTIGL---MKKVVEKVQRENEQLKKASGI-----LTSEKMATIEEENRNL-KA 2169
Query: 1317 AKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLR 1376
E +++ G L E +N A N +R +K + + S+ LR
Sbjct: 2170 ELE--KLKAHFG----RQLSMQFESKNKGTEKIVAENERLRKELKKEIEA-----SEKLR 2218
Query: 1377 M-RFGIEMSSDHT---LEEVGKQFDVTRERIRQIEAKALRKLRH--PSRYYKLKI 1425
+ + +E+ +D LEE GK+ R Q+E + + SR Y+ K+
Sbjct: 2219 IAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEGADSKSWKSIVVSRVYETKM 2273
>UNIPROTKB|F1SPZ0 [details] [associations]
symbol:CEP290 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060041 "retina development in camera-type eye"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0042384 "cilium assembly"
evidence=IEA] [GO:0036038 "TCTN-B9D complex" evidence=IEA]
[GO:0032391 "photoreceptor connecting cilium" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0009986 "cell
surface" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000930 "gamma-tubulin complex" evidence=IEA]
InterPro:IPR026201 GO:GO:0005829 GO:GO:0005634 GO:GO:0005813
GO:GO:0045893 GO:GO:0009986 GO:GO:0015031 GO:GO:0060041
GO:GO:0036038 GO:GO:0042384 GeneTree:ENSGT00700000104127
GO:GO:0000930 GO:GO:0032391 PANTHER:PTHR18879 OMA:IVAENER
EMBL:CU468671 Ensembl:ENSSSCT00000001011 Uniprot:F1SPZ0
Length = 2483
Score = 83 (34.3 bits), Expect = 5.8e-05, Sum P(7) = 5.8e-05
Identities = 42/174 (24%), Positives = 86/174 (49%)
Query: 487 NKISRISRQILQETGSEPDPSV-IAIKMEMPEEKIRKIMKIAKEPVSMESPVGD---DED 542
N+I +++ + TGS PDPS+ + ++E+ KI++ ++I E + + + +++
Sbjct: 1428 NEILNAAQKFEEATGSMPDPSLPLPNQLEIALRKIKENVRIILETQATCKSLDEKLKEKE 1487
Query: 543 SHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRM-RFGIEMSSDHTLEE 601
S L + +EN+L+ D +N +R ++ L + RE + + R +E S HTL+
Sbjct: 1488 SALQ--LAEENILS-RDKVIN-ELR--LR--LPATAEREKLIAELGRKEVEPKSHHTLKL 1539
Query: 602 VGKQFDVTRERIRQIEAKALRKLRPLAHDWLEQRTHQNEKIIACSSDSSNHNEH 655
+ + R+ Q E + L+K + L LE+ + +I+ + H H
Sbjct: 1540 AHQTIANMQARLNQKE-EVLKKYQHL----LEKAREEQREIVK-KHEEELHTLH 1587
Score = 81 (33.6 bits), Expect = 5.8e-05, Sum P(7) = 5.8e-05
Identities = 49/192 (25%), Positives = 77/192 (40%)
Query: 1052 EKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKC 1111
+KE +S ++A +N +E+L L + Q + + +LE+
Sbjct: 1700 QKESQRLKSELQAQKE-ANSRAPTTTMRNLVERLKSQLALKEKQQKALSRALLELRAEMT 1758
Query: 1112 GMPRLHFIKVFPENEINLNW---VDNETKIQHDYNLILCRNIPSIKELQQKLINLQTDIV 1168
I + E NLN VD TK L NI +KE + N + +
Sbjct: 1759 AAAEERIISATSQKEANLNVQQIVDRHTKELKSQVEDLSENILKLKESLKTSKNRENSLT 1818
Query: 1169 LPLNDL-RDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLI--QEGN 1225
LNDL ++ +K A + R+ K + + N L I K+ T GLQ LI ++
Sbjct: 1819 DNLNDLTNELQKKQKAYDKMLRE-KDGIDQENDELKRQI-KRLTS-GLQGKPLIDNKQSL 1875
Query: 1226 IG-LMKAVDKFE 1236
I L K + K E
Sbjct: 1876 IEELQKKIKKLE 1887
Score = 66 (28.3 bits), Expect = 5.8e-05, Sum P(7) = 5.8e-05
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 127 RTKDPIKMYMREMGSVELLTRDGE-IEIAKRIEE------GLKDMIHAISSCPTTIM--- 176
RTK+ + E+ + +D E +E KR+++ GL+D + I +C I
Sbjct: 421 RTKEAERT--AELAEADAREKDKELVETLKRLKDYESGIYGLEDAVIEIKNCKNQIKIRD 478
Query: 177 -EILIAADKISKNEIKIDEIVD 197
EI + +I+K E+KI++ +D
Sbjct: 479 REIEVLTKEINKLEMKINDFLD 500
Score = 57 (25.1 bits), Expect = 5.8e-05, Sum P(7) = 5.8e-05
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 246 KFSNISFHFDKMRKAFEKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRN 301
KFS + +E NS+ + H N+ N+ L + K +E+L TL++
Sbjct: 1287 KFSKTMIQLQNDKLKIMQEMKNSQ---QEHRNMKNKTLEMELKLKGLEELISTLKD 1339
Score = 55 (24.4 bits), Expect = 5.8e-05, Sum P(7) = 5.8e-05
Identities = 13/65 (20%), Positives = 31/65 (47%)
Query: 890 MLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEE 949
M + DD + L V D R K+ ++ ++E +++L ++ + K+I+
Sbjct: 1628 MEQTVAEQDDSLASLVIKLKQVSQDLERQKEITELKIKEFENMKLRLQENHEDEVKKIKA 1687
Query: 950 GLKDM 954
++D+
Sbjct: 1688 EIEDL 1692
Score = 54 (24.1 bits), Expect = 0.00067, Sum P(7) = 0.00067
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 99 LMLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIE 158
+ L N++ E L + D R++ I + ++ S EL +E K++E
Sbjct: 599 MSLKNMSEAQSKNEFLSRELIEKEKDLERSRTIIAKFQKK--SKEL------VEENKQLE 650
Query: 159 EGLKDMIHAI 168
EG+K+++ AI
Sbjct: 651 EGMKEILQAI 660
Score = 51 (23.0 bits), Expect = 0.00020, Sum P(7) = 0.00020
Identities = 35/193 (18%), Positives = 87/193 (45%)
Query: 264 EGYNSESYIKAHNN--ISNEMLGIRFTAKS-IEKLCDTLRNQINQVTQIEKQILEI--VV 318
E YN + + H + E L + T K+ E + + R +Q+ Q ++ E ++
Sbjct: 808 EDYNRKFAVIRHQQSLLYKEYLSEKETWKTESETMKEEKRKLEDQIQQDAIKVKEYNNLL 867
Query: 319 NKCGMPRLHFIKVFPENEINLNWVD-NETKIQHDYNLILCRNIPSIKELQQK---LINLQ 374
+ M K EN + + NE + Y ++ KE +++ LI+++
Sbjct: 868 SALQMDSDEMRKTLSENNRRITVLQVNEKSLIRQYTTLVEMERQLRKEYRKQNNELISME 927
Query: 375 TDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEG 434
++ + L+ ++M ++ A + + + + L ++ K+Y + +++ D++Q+
Sbjct: 928 AEVGEKIGRLQRF-KEMAVFKIAALQKVIDNSVSLSELELA-NKQYNELTIKYRDILQKD 985
Query: 435 NIGLMKAVDKFEY 447
N+ L++ + E+
Sbjct: 986 NM-LVQRTNNLEH 997
Score = 49 (22.3 bits), Expect = 5.8e-05, Sum P(7) = 5.8e-05
Identities = 30/171 (17%), Positives = 73/171 (42%)
Query: 1257 RSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKI 1316
++I + +TI + M + + K+ R + Q+ + +G + I++E EK++ ++
Sbjct: 2127 KTIPELEKTIGL---MKKVVEKVQRENEQLKKASGILTSEKMANIELE--NEKLKAELEK 2181
Query: 1317 AKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLR 1376
K + + + + + + I EN + ++ N+L ++L
Sbjct: 2182 LKAHLGRQLSMQHESKTRGTEKIVAENERLRKELKKETEAAEKLRIAKNNL-----EILN 2236
Query: 1377 MRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRH--PSRYYKLKI 1425
+ ++ LEE+GK+ + R Q+E + + +R Y+ K+
Sbjct: 2237 EKMTVQ------LEEMGKRLQLAESRGPQLEGADSKSWKSIVVTRMYETKL 2281
Score = 39 (18.8 bits), Expect = 0.00045, Sum P(7) = 0.00044
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 1365 NSLTPRESKVLRMRFGIEMSS 1385
N L + K L +FG+E++S
Sbjct: 2441 NILLEEKLKKLSQQFGVELTS 2461
Score = 38 (18.4 bits), Expect = 5.8e-05, Sum P(7) = 5.8e-05
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 27 DIKSNSREEIENLRKKFKILIKLGKERGYLTFSEI 61
++KS S+E + +L + + L+K+ + L E+
Sbjct: 39 ELKSESQENMVHLFRITQSLMKMKAQEVELALEEV 73
>TIGR_CMR|BA_4516 [details] [associations]
symbol:BA_4516 "DNA primase" species:198094 "Bacillus
anthracis str. Ames" [GO:0003896 "DNA primase activity"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] InterPro:IPR002694 InterPro:IPR006295
InterPro:IPR013173 InterPro:IPR019475 Pfam:PF01807 Pfam:PF10410
PIRSF:PIRSF002811 SMART:SM00400 SMART:SM00766 InterPro:IPR006171
GO:GO:0046872 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0003896
GO:GO:0030894 HOGENOM:HOG000014483 KO:K02316 ProtClustDB:PRK05667
Gene3D:3.90.580.10 Gene3D:3.90.980.10 InterPro:IPR013264
Pfam:PF13662 Pfam:PF08275 SMART:SM00493 TIGRFAMs:TIGR01391
RefSeq:NP_846740.1 RefSeq:YP_021161.1 RefSeq:YP_030443.1
HSSP:Q9X4D0 ProteinModelPortal:Q81LU4 SMR:Q81LU4 IntAct:Q81LU4
DNASU:1088242 EnsemblBacteria:EBBACT00000011868
EnsemblBacteria:EBBACT00000015052 EnsemblBacteria:EBBACT00000021626
GeneID:1088242 GeneID:2819029 GeneID:2852222 KEGG:ban:BA_4516
KEGG:bar:GBAA_4516 KEGG:bat:BAS4195 OMA:LELVEVC
BioCyc:BANT260799:GJAJ-4251-MONOMER
BioCyc:BANT261594:GJ7F-4393-MONOMER Uniprot:Q81LU4
Length = 598
Score = 100 (40.3 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 706 ETPLFHKSNELYGLFEAKNAIGKSGYVLITEGYMDVIGLSQFG 748
ETP+FHKS LY +A+ I K G V++ EGY DV+ + G
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRKRGQVVLFEGYADVLAAVKSG 280
Score = 84 (34.6 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 757 CFDGDQXXXXXXXXXLEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSK--KNAF 814
C+DGD+ ++ L K+ LPDK DPD Y++++G F K++
Sbjct: 310 CYDGDKAGREATMKAGQLLLQVGCQVKVTS---LPDKLDPDEYVQQYGTTAFENLVKSSI 366
Query: 815 SF 816
SF
Sbjct: 367 SF 368
>TIGR_CMR|CJE_0058 [details] [associations]
symbol:CJE_0058 "RNA polymerase sigma factor, sigma-F"
species:195099 "Campylobacter jejuni RM1221" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG1191 HOGENOM:HOG000270271 KO:K02405
OMA:TYAITRI ProtClustDB:PRK06986 TIGRFAMs:TIGR02479
RefSeq:YP_178083.1 ProteinModelPortal:Q5HXA2 STRING:Q5HXA2
GeneID:3230821 KEGG:cjr:CJE0058 PATRIC:20041821
BioCyc:CJEJ195099:GJC0-62-MONOMER Uniprot:Q5HXA2
Length = 230
Score = 122 (48.0 bits), Expect = 0.00019, P = 0.00019
Identities = 54/229 (23%), Positives = 107/229 (46%)
Query: 399 RKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 458
+K + E+ + + + ++A + +R +D+ +IG+ + + K RR K
Sbjct: 14 KKEQDELVLSYMPALRAMAFRLKERLPSSIDVNDLISIGVEEMI-KLS-RRYDKEQNDNF 71
Query: 459 W-WIRQAITRSIADQARTIRIPVHMIETINK-ISRISRQILQETGSEPDPSVIAIKMEMP 516
W + R+ + S+ D R++ + I K I I + E EPD +A K+++
Sbjct: 72 WGFARKRVNGSMLDYLRSLDVMSRNNRKIIKDIDAIMDEYFLEHECEPDDEYLAKKLDLD 131
Query: 517 EEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNS 576
EKI+++ +S P+ DE L + ED N L + + + ++L+
Sbjct: 132 VEKIKEVR--TAHAISYTLPI--DEQIEL--YNED-NTLEKIE---KEELLEKIHEVLDD 181
Query: 577 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
L R+ ++++ + E+S L+E+ + ++ RI QI K L+KLR
Sbjct: 182 LKERDQLIIQLYYYEELS----LKEISEILQISESRISQIHKKLLKKLR 226
Score = 122 (48.0 bits), Expect = 0.00019, P = 0.00019
Identities = 54/229 (23%), Positives = 107/229 (46%)
Query: 1189 RKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 1248
+K + E+ + + + ++A + +R +D+ +IG+ + + K RR K
Sbjct: 14 KKEQDELVLSYMPALRAMAFRLKERLPSSIDVNDLISIGVEEMI-KLS-RRYDKEQNDNF 71
Query: 1249 W-WIRQAITRSIADQARTIRIPVHMIETINK-ISRISRQILQETGSEPDPSVIAIKMEMP 1306
W + R+ + S+ D R++ + I K I I + E EPD +A K+++
Sbjct: 72 WGFARKRVNGSMLDYLRSLDVMSRNNRKIIKDIDAIMDEYFLEHECEPDDEYLAKKLDLD 131
Query: 1307 EEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNS 1366
EKI+++ +S P+ DE L + ED N L + + + ++L+
Sbjct: 132 VEKIKEVR--TAHAISYTLPI--DEQIEL--YNED-NTLEKIE---KEELLEKIHEVLDD 181
Query: 1367 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
L R+ ++++ + E+S L+E+ + ++ RI QI K L+KLR
Sbjct: 182 LKERDQLIIQLYYYEELS----LKEISEILQISESRISQIHKKLLKKLR 226
>UNIPROTKB|F1Q2D1 [details] [associations]
symbol:CEP290 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060271 "cilium morphogenesis" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR026201 GO:GO:0005634 GO:GO:0005813
GeneTree:ENSGT00700000104127 GO:GO:0060271 PANTHER:PTHR18879
EMBL:AAEX03009910 Ensembl:ENSCAFT00000009762 Uniprot:F1Q2D1
Length = 2411
Score = 86 (35.3 bits), Expect = 0.00035, Sum P(5) = 0.00035
Identities = 65/286 (22%), Positives = 131/286 (45%)
Query: 365 ELQQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAK-KYTDR 423
E++ KL L+ +++ L D R +K+I MK + + + + N LV + KY +
Sbjct: 1314 EMELKLKGLE-ELISTLKDARGA-QKVINWHMKIEELRLQELKLNRELVKDKEEIKYLN- 1370
Query: 424 GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMI 483
++I E + ++ + + W R+ + R + I H
Sbjct: 1371 -----NIISEYEHTISSLEEEIVQQNKFHEERQMAWDQREV------ELERQLDIFDHQQ 1419
Query: 484 ETINKISRISRQILQETGSEPDPSV-IAIKMEMPEEKIRKIMKIAKEP----VSMESPVG 538
N+I + +++ + TGS PDPS+ + ++E+ KI++ ++I E S+E +
Sbjct: 1420 ---NEILKAAQKFEEATGSMPDPSLPLPNQLEIALRKIKENVRIILETRATCKSLEEKLK 1476
Query: 539 DDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRM-RFGIEMSSDH 597
+ E S L + ++N+L+ D +N +R ++ L + RE + + R +E S H
Sbjct: 1477 EKE-SALR--LAEQNILS-RDKVIN-ELR--LR--LPATAEREKLIAELGRKEVEPKSHH 1527
Query: 598 TLEEVGKQFDVTRERIRQIEAKALRKLRPLAHDWLEQRTHQNEKII 643
TL+ + + R+ Q E + L+K + L LE+ + +I+
Sbjct: 1528 TLKIAQQTIANMQARLNQKE-EVLKKYQHL----LEKAREEQREIV 1568
Score = 79 (32.9 bits), Expect = 0.00035, Sum P(5) = 0.00035
Identities = 48/191 (25%), Positives = 75/191 (39%)
Query: 1052 EKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKC 1111
+KE N +S ++A +N +E+L L + Q + + +LE+
Sbjct: 1692 QKESQNLKSELQAQKE-ANSRAPTTTMRNLVERLKSQLALKEKQQKALSRALLELRAEMT 1750
Query: 1112 GMPRLHFIKVFPENEINLNW---VDNETKIQHDYNLILCRNIPSIKELQQKLINLQTDIV 1168
I + E NLN VD TK L N+ +KE + N + +
Sbjct: 1751 AAAEERIISATSQKEANLNVQQIVDRHTKELKSQIDDLNENLLKLKEALKTSKNRENSLS 1810
Query: 1169 LPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLI--QEGNI 1226
LNDL + +K K + K + + N L I K+ T GLQ LI ++ I
Sbjct: 1811 DNLNDLTNELQKKQKAYNKMLREKDGIDQENDELKRQI-KRLTS-GLQGKPLIDNKQSLI 1868
Query: 1227 G-LMKAVDKFE 1236
L K + K E
Sbjct: 1869 EELQKKIKKLE 1879
Score = 65 (27.9 bits), Expect = 0.00035, Sum P(5) = 0.00035
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 138 EMGSVELLTRDGE-IEIAKRIEE------GLKDMIHAISSCPTTIM----EILIAADKIS 186
E+ + +D E +E KR+++ GL+D + I +C I EI + +I+
Sbjct: 422 ELAEADAREKDKELVETLKRLKDYESGVYGLEDAVIEIKNCKNQIKIRDREIEVLTKEIN 481
Query: 187 KNEIKIDEIVD 197
K E+KI++ +D
Sbjct: 482 KLELKINDFLD 492
Score = 58 (25.5 bits), Expect = 0.00035, Sum P(5) = 0.00035
Identities = 12/65 (18%), Positives = 31/65 (47%)
Query: 890 MLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEE 949
M + DD + L V D R K+ ++ ++E +++L ++ + K+++
Sbjct: 1620 MEQTVAEQDDSLSSLLVKLKKVSQDLERQKEITELKIKEFENIKLRLQENHADEVKKVKA 1679
Query: 950 GLKDM 954
++D+
Sbjct: 1680 EVEDL 1684
Score = 47 (21.6 bits), Expect = 0.00035, Sum P(5) = 0.00035
Identities = 30/171 (17%), Positives = 72/171 (42%)
Query: 1257 RSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKI 1316
++I + +TI + M + + K+ R + Q+ + +G + I++E EK++ ++
Sbjct: 2119 KTIPELEKTIGL---MKKVVEKVQRENEQLKKASGILTSEKMANIELE--NEKLKAELEK 2173
Query: 1317 AKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLR 1376
K + + + + + + I EN + ++ N+L ++L
Sbjct: 2174 LKAHLGRQLSIHYESKTKGTEKIVAENERLRKELKKETEAAEKLRIAKNNL-----EILN 2228
Query: 1377 MRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRH--PSRYYKLKI 1425
+ ++ LEE GK+ + R Q+E + + +R Y+ K+
Sbjct: 2229 EKMTVQ------LEETGKRLQLAESRGPQLEGADSKSWKSIVMTRMYETKL 2273
>UNIPROTKB|E2R0F5 [details] [associations]
symbol:CEP290 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060041 "retina development in camera-type
eye" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0042384 "cilium
assembly" evidence=IEA] [GO:0036038 "TCTN-B9D complex"
evidence=IEA] [GO:0032391 "photoreceptor connecting cilium"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000930 "gamma-tubulin complex"
evidence=IEA] InterPro:IPR026201 GO:GO:0005829 GO:GO:0005634
GO:GO:0005813 GO:GO:0045893 GO:GO:0009986 GO:GO:0015031
GO:GO:0060041 GO:GO:0036038 GO:GO:0042384
GeneTree:ENSGT00700000104127 GO:GO:0000930 GO:GO:0032391
PANTHER:PTHR18879 OMA:IVAENER EMBL:AAEX03009910
Ensembl:ENSCAFT00000009731 Uniprot:E2R0F5
Length = 2481
Score = 86 (35.3 bits), Expect = 0.00040, Sum P(5) = 0.00040
Identities = 65/286 (22%), Positives = 131/286 (45%)
Query: 365 ELQQKLINLQTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAK-KYTDR 423
E++ KL L+ +++ L D R +K+I MK + + + + N LV + KY +
Sbjct: 1322 EMELKLKGLE-ELISTLKDARGA-QKVINWHMKIEELRLQELKLNRELVKDKEEIKYLN- 1378
Query: 424 GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMI 483
++I E + ++ + + W R+ + R + I H
Sbjct: 1379 -----NIISEYEHTISSLEEEIVQQNKFHEERQMAWDQREV------ELERQLDIFDHQQ 1427
Query: 484 ETINKISRISRQILQETGSEPDPSV-IAIKMEMPEEKIRKIMKIAKEP----VSMESPVG 538
N+I + +++ + TGS PDPS+ + ++E+ KI++ ++I E S+E +
Sbjct: 1428 ---NEILKAAQKFEEATGSMPDPSLPLPNQLEIALRKIKENVRIILETRATCKSLEEKLK 1484
Query: 539 DDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRM-RFGIEMSSDH 597
+ E S L + ++N+L+ D +N +R ++ L + RE + + R +E S H
Sbjct: 1485 EKE-SALR--LAEQNILS-RDKVIN-ELR--LR--LPATAEREKLIAELGRKEVEPKSHH 1535
Query: 598 TLEEVGKQFDVTRERIRQIEAKALRKLRPLAHDWLEQRTHQNEKII 643
TL+ + + R+ Q E + L+K + L LE+ + +I+
Sbjct: 1536 TLKIAQQTIANMQARLNQKE-EVLKKYQHL----LEKAREEQREIV 1576
Score = 79 (32.9 bits), Expect = 0.00040, Sum P(5) = 0.00040
Identities = 48/191 (25%), Positives = 75/191 (39%)
Query: 1052 EKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNKC 1111
+KE N +S ++A +N +E+L L + Q + + +LE+
Sbjct: 1700 QKESQNLKSELQAQKE-ANSRAPTTTMRNLVERLKSQLALKEKQQKALSRALLELRAEMT 1758
Query: 1112 GMPRLHFIKVFPENEINLNW---VDNETKIQHDYNLILCRNIPSIKELQQKLINLQTDIV 1168
I + E NLN VD TK L N+ +KE + N + +
Sbjct: 1759 AAAEERIISATSQKEANLNVQQIVDRHTKELKSQIDDLNENLLKLKEALKTSKNRENSLS 1818
Query: 1169 LPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLI--QEGNI 1226
LNDL + +K K + K + + N L I K+ T GLQ LI ++ I
Sbjct: 1819 DNLNDLTNELQKKQKAYNKMLREKDGIDQENDELKRQI-KRLTS-GLQGKPLIDNKQSLI 1876
Query: 1227 G-LMKAVDKFE 1236
L K + K E
Sbjct: 1877 EELQKKIKKLE 1887
Score = 65 (27.9 bits), Expect = 0.00040, Sum P(5) = 0.00040
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 138 EMGSVELLTRDGE-IEIAKRIEE------GLKDMIHAISSCPTTIM----EILIAADKIS 186
E+ + +D E +E KR+++ GL+D + I +C I EI + +I+
Sbjct: 430 ELAEADAREKDKELVETLKRLKDYESGVYGLEDAVIEIKNCKNQIKIRDREIEVLTKEIN 489
Query: 187 KNEIKIDEIVD 197
K E+KI++ +D
Sbjct: 490 KLELKINDFLD 500
Score = 58 (25.5 bits), Expect = 0.00040, Sum P(5) = 0.00040
Identities = 12/65 (18%), Positives = 31/65 (47%)
Query: 890 MLSNITSDDDVEEATEAALSTVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEE 949
M + DD + L V D R K+ ++ ++E +++L ++ + K+++
Sbjct: 1628 MEQTVAEQDDSLSSLLVKLKKVSQDLERQKEITELKIKEFENIKLRLQENHADEVKKVKA 1687
Query: 950 GLKDM 954
++D+
Sbjct: 1688 EVEDL 1692
Score = 47 (21.6 bits), Expect = 0.00040, Sum P(5) = 0.00040
Identities = 30/171 (17%), Positives = 72/171 (42%)
Query: 1257 RSIADQARTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKI 1316
++I + +TI + M + + K+ R + Q+ + +G + I++E EK++ ++
Sbjct: 2127 KTIPELEKTIGL---MKKVVEKVQRENEQLKKASGILTSEKMANIELE--NEKLKAELEK 2181
Query: 1317 AKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLR 1376
K + + + + + + I EN + ++ N+L ++L
Sbjct: 2182 LKAHLGRQLSIHYESKTKGTEKIVAENERLRKELKKETEAAEKLRIAKNNL-----EILN 2236
Query: 1377 MRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRH--PSRYYKLKI 1425
+ ++ LEE GK+ + R Q+E + + +R Y+ K+
Sbjct: 2237 EKMTVQ------LEETGKRLQLAESRGPQLEGADSKSWKSIVMTRMYETKL 2281
>TIGR_CMR|BA_4115 [details] [associations]
symbol:BA_4115 "prophage LambdaBa02, RNA polymerase sigma-F
factor, putative" species:198094 "Bacillus anthracis str. Ames"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0016989 "sigma factor antagonist activity"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001387 InterPro:IPR007627 InterPro:IPR010982
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF01381 Pfam:PF04542 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0043565
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.260.40 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
RefSeq:NP_846354.1 RefSeq:YP_020759.1 ProteinModelPortal:Q81W67
DNASU:1088309 EnsemblBacteria:EBBACT00000012091
EnsemblBacteria:EBBACT00000018334 GeneID:1088309 GeneID:2818224
KEGG:ban:BA_4115 KEGG:bar:GBAA_4115 PATRIC:18785820
HOGENOM:HOG000034523 OMA:ESTVENK ProtClustDB:CLSK918226
BioCyc:BANT261594:GJ7F-4002-MONOMER Uniprot:Q81W67
Length = 299
Score = 122 (48.0 bits), Expect = 0.00040, P = 0.00040
Identities = 55/223 (24%), Positives = 105/223 (47%)
Query: 1205 SIAKKYT-DRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 1263
+IAK + L DLIQ G +GL+ A F+ G+KF+T+A I I +++ D
Sbjct: 25 NIAKAIEQETNLNMDDLIQSGMLGLVTARRDFKTELGFKFTTFAVPRILGYIRKAVRDSQ 84
Query: 1264 RTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSM 1323
+ IRI + E KISR+ L + E IA +E+ ++ + +S+
Sbjct: 85 K-IRITNEVYEIKGKISRMK---LHDEEVES----IAKLLEVSVRDVKTAKEFNPRTISL 136
Query: 1324 ESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVL-RMRFGIE 1382
++P+ + + + + EN L D + ++ V+K ++ +T S + + +F E
Sbjct: 137 QTPLNKEVNK---EKVTLENTLI--DKKTSMTLDDVIKKMI--ITAFLSTLCSKEKFVWE 189
Query: 1383 MSSDH-TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLK 1424
+ + + T +GK+ VT+ +I +I +K + L+
Sbjct: 190 LHAKNMTQAAIGKRLGVTQTQISRILKGIYKKAEEYGNKHSLR 232
Score = 121 (47.7 bits), Expect = 0.00052, P = 0.00052
Identities = 53/205 (25%), Positives = 100/205 (48%)
Query: 415 SIAKKYT-DRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 473
+IAK + L DLIQ G +GL+ A F+ G+KF+T+A I I +++ D
Sbjct: 25 NIAKAIEQETNLNMDDLIQSGMLGLVTARRDFKTELGFKFTTFAVPRILGYIRKAVRDSQ 84
Query: 474 RTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSM 533
+ IRI + E KISR+ L + E IA +E+ ++ + +S+
Sbjct: 85 K-IRITNEVYEIKGKISRMK---LHDEEVES----IAKLLEVSVRDVKTAKEFNPRTISL 136
Query: 534 ESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVL-RMRFGIE 592
++P+ + + + + EN L D + ++ V+K ++ +T S + + +F E
Sbjct: 137 QTPLNKEVNK---EKVTLENTLI--DKKTSMTLDDVIKKMI--ITAFLSTLCSKEKFVWE 189
Query: 593 MSSDH-TLEEVGKQFDVTRERIRQI 616
+ + + T +GK+ VT+ +I +I
Sbjct: 190 LHAKNMTQAAIGKRLGVTQTQISRI 214
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1432 1332 0.00086 124 3 11 22 0.39 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 78
No. of states in DFA: 618 (66 KB)
Total size of DFA: 480 KB (2220 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 133.56u 0.14s 133.70t Elapsed: 00:00:45
Total cpu time: 133.60u 0.14s 133.74t Elapsed: 00:00:45
Start: Thu Aug 15 15:51:50 2013 End: Thu Aug 15 15:52:35 2013