RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15215
(1432 letters)
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 239 bits (610), Expect = 5e-71
Identities = 126/332 (37%), Positives = 191/332 (57%), Gaps = 8/332 (2%)
Query: 149 GEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNF---- 204
GEI+IAKRIE+G+ + +++ P I +L +++ E ++ +++ G +D N
Sbjct: 3 GEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYNRVEAEEARLSDLITGFVDPNAEEDL 62
Query: 205 ----SSNNRVIKGNKNNNEEKILIESSSADLSTEQLEKLKYESLIKFSNISFHFDKMRKA 260
+ + +++E E D + + + KF+ + + R
Sbjct: 63 APTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDT 122
Query: 261 FEKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNK 320
+ +G + + + +S R K + L +++R +++V E+ I+++ V +
Sbjct: 123 IKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQ 182
Query: 321 CGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKELQQKLINLQTDIVLP 380
C MP+ +FI +F NE + W + + ++ L + QKL ++ + L
Sbjct: 183 CKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLT 242
Query: 381 LNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMK 440
+ ++DINR+M GE KAR+AK+EM EANLRLVISIAKKYT+RGLQFLDLIQEGNIGLMK
Sbjct: 243 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 302
Query: 441 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 472
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQ
Sbjct: 303 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 334
Score = 239 bits (610), Expect = 5e-71
Identities = 126/332 (37%), Positives = 191/332 (57%), Gaps = 8/332 (2%)
Query: 939 GEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVDGLIDKNF---- 994
GEI+IAKRIE+G+ + +++ P I +L +++ E ++ +++ G +D N
Sbjct: 3 GEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYNRVEAEEARLSDLITGFVDPNAEEDL 62
Query: 995 ----SSNNRVIKGNKNNNEEKILIESSSADLSTEQLEKLKYESLIKFSNISFHFDKMRKA 1050
+ + +++E E D + + + KF+ + + R
Sbjct: 63 APTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDT 122
Query: 1051 FEKEGYNSESYIKAHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVVNK 1110
+ +G + + + +S R K + L +++R +++V E+ I+++ V +
Sbjct: 123 IKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQ 182
Query: 1111 CGMPRLHFIKVFPENEINLNWVDNETKIQHDYNLILCRNIPSIKELQQKLINLQTDIVLP 1170
C MP+ +FI +F NE + W + + ++ L + QKL ++ + L
Sbjct: 183 CKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLT 242
Query: 1171 LNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMK 1230
+ ++DINR+M GE KAR+AK+EM EANLRLVISIAKKYT+RGLQFLDLIQEGNIGLMK
Sbjct: 243 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 302
Query: 1231 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 1262
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQ
Sbjct: 303 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 334
>d1ku2a2 a.177.1.1 (A:93-272) Sigma factor SigA {Thermus aquaticus
[TaxId: 271]}
Length = 180
Score = 107 bits (269), Expect = 2e-27
Identities = 60/97 (61%), Positives = 74/97 (76%)
Query: 379 LPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGL 438
L L ++ + + A++ + EANLRLV+SIAKKYT RGL FLDLIQEGN GL
Sbjct: 84 GKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGL 143
Query: 439 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 475
++AV+KFEY+R +KFSTYATWWIRQAI R+IADQART
Sbjct: 144 IRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQART 180
Score = 107 bits (269), Expect = 2e-27
Identities = 60/97 (61%), Positives = 74/97 (76%)
Query: 1169 LPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGL 1228
L L ++ + + A++ + EANLRLV+SIAKKYT RGL FLDLIQEGN GL
Sbjct: 84 GKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGL 143
Query: 1229 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 1265
++AV+KFEY+R +KFSTYATWWIRQAI R+IADQART
Sbjct: 144 IRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQART 180
Score = 52.1 bits (124), Expect = 6e-08
Identities = 15/37 (40%), Positives = 28/37 (75%)
Query: 130 DPIKMYMREMGSVELLTRDGEIEIAKRIEEGLKDMIH 166
DP++ Y+ E+G V LLT + EI++A+++EEG++ +
Sbjct: 2 DPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKK 38
Score = 52.1 bits (124), Expect = 6e-08
Identities = 15/37 (40%), Positives = 28/37 (75%)
Query: 920 DPIKMYMREMGSVELLTRDGEIEIAKRIEEGLKDMIH 956
DP++ Y+ E+G V LLT + EI++A+++EEG++ +
Sbjct: 2 DPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKK 38
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima
[TaxId: 2336]}
Length = 87
Score = 94.8 bits (236), Expect = 6e-24
Identities = 45/78 (57%), Positives = 56/78 (71%)
Query: 1351 ALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 1410
A+ MR ++ +L +L+PRE+ VLRMR+G+ TLEEVG+ F+VTRERIRQIE KA
Sbjct: 3 AMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKA 62
Query: 1411 LRKLRHPSRYYKLKIFLE 1428
LRKLRHPSR LK L
Sbjct: 63 LRKLRHPSRSKYLKSLLS 80
Score = 82.1 bits (203), Expect = 2e-19
Identities = 38/65 (58%), Positives = 49/65 (75%)
Query: 561 ALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKA 620
A+ MR ++ +L +L+PRE+ VLRMR+G+ TLEEVG+ F+VTRERIRQIE KA
Sbjct: 3 AMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKA 62
Query: 621 LRKLR 625
LRKLR
Sbjct: 63 LRKLR 67
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli
[TaxId: 562]}
Length = 68
Score = 87.1 bits (216), Expect = 2e-21
Identities = 52/67 (77%), Positives = 60/67 (89%)
Query: 1362 DILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYY 1421
D+L LT RE+KVLRMRFGI+M++D+TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR
Sbjct: 1 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 60
Query: 1422 KLKIFLE 1428
L+ FL+
Sbjct: 61 VLRSFLD 67
Score = 74.4 bits (183), Expect = 5e-17
Identities = 45/54 (83%), Positives = 51/54 (94%)
Query: 572 DILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
D+L LT RE+KVLRMRFGI+M++D+TLEEVGKQFDVTRERIRQIEAKALRKLR
Sbjct: 1 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 54
>d1ku2a1 a.4.13.1 (A:273-332) Sigma factor SigA {Thermus aquaticus
[TaxId: 271]}
Length = 60
Score = 84.7 bits (210), Expect = 1e-20
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 476 IRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKM--EMPEEKIRKIMKIAKEPVSM 533
IRIPVHM+ETINK+SR +RQ+ QE G EP IA M +++ + +KIA+EPVS+
Sbjct: 1 IRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSL 60
Score = 84.7 bits (210), Expect = 1e-20
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 1266 IRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKM--EMPEEKIRKIMKIAKEPVSM 1323
IRIPVHM+ETINK+SR +RQ+ QE G EP IA M +++ + +KIA+EPVS+
Sbjct: 1 IRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSL 60
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId:
271]}
Length = 61
Score = 80.5 bits (199), Expect = 3e-19
Identities = 33/59 (55%), Positives = 43/59 (72%)
Query: 1360 VKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 1418
++ L+ L+ RE+ VL+MR G+ +HTLEEVG F VTRERIRQIE KALRKL++
Sbjct: 2 LEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHE 60
Score = 77.4 bits (191), Expect = 4e-18
Identities = 33/56 (58%), Positives = 42/56 (75%)
Query: 570 VKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
++ L+ L+ RE+ VL+MR G+ +HTLEEVG F VTRERIRQIE KALRKL+
Sbjct: 2 LEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 57
>d1rp3a3 a.177.1.1 (A:0-86) Sigma factor sigma-28 (FliA) {Aquifex
aeolicus [TaxId: 63363]}
Length = 87
Score = 78.4 bits (193), Expect = 4e-18
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 399 RKAKREMTEANLRLVISIAKKYTDR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 455
+ + E+ L LV +IA + DLI G IGL+KAVD +
Sbjct: 9 QIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEA 68
Query: 456 YATWWIRQAITRSIADQ 472
Y I+ AI +
Sbjct: 69 YIKLRIKGAIYDYLRSL 85
Score = 78.4 bits (193), Expect = 4e-18
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 1189 RKAKREMTEANLRLVISIAKKYTDR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 1245
+ + E+ L LV +IA + DLI G IGL+KAVD +
Sbjct: 9 QIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEA 68
Query: 1246 YATWWIRQAITRSIADQ 1262
Y I+ AI +
Sbjct: 69 YIKLRIKGAIYDYLRSL 85
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId:
1422]}
Length = 57
Score = 67.4 bits (165), Expect = 1e-14
Identities = 10/55 (18%), Positives = 24/55 (43%)
Query: 474 RTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAK 528
T+++ + E NKI + ++ + G P + IA + + E + + +
Sbjct: 2 GTVKVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVR 56
Score = 67.4 bits (165), Expect = 1e-14
Identities = 10/55 (18%), Positives = 24/55 (43%)
Query: 1264 RTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAK 1318
T+++ + E NKI + ++ + G P + IA + + E + + +
Sbjct: 2 GTVKVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVR 56
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex
aeolicus [TaxId: 63363]}
Length = 77
Score = 64.4 bits (157), Expect = 2e-13
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 474 RTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKI--AKEPV 531
R +R E +I + ++ ++ G EP +A ++ + E++ K + +
Sbjct: 3 RQVR------EKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYIL 56
Query: 532 SMESPVGDDEDSHLGDFIEDE 552
S+E D + I
Sbjct: 57 SLEEVFRDFARD-YSELIPSS 76
Score = 64.4 bits (157), Expect = 2e-13
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 1264 RTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKI--AKEPV 1321
R +R E +I + ++ ++ G EP +A ++ + E++ K + +
Sbjct: 3 RQVR------EKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYIL 56
Query: 1322 SMESPVGDDEDSHLGDFIEDE 1342
S+E D + I
Sbjct: 57 SLEEVFRDFARD-YSELIPSS 76
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex
aeolicus [TaxId: 63363]}
Length = 71
Score = 51.4 bits (123), Expect = 8e-09
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 1347 PSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 1406
+ + + VK+ ++ L RE V+++ F E+ +EV K + + R+ Q+
Sbjct: 2 VEEEVIKRELTEKVKEAVSKLPEREKLVIQLIFYEELP----AKEVAKILETSVSRVSQL 57
Query: 1407 EAKALRKLRH 1416
+AKAL +LR
Sbjct: 58 KAKALERLRE 67
Score = 50.6 bits (121), Expect = 1e-08
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 557 PSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQI 616
+ + + VK+ ++ L RE V+++ F E+ +EV K + + R+ Q+
Sbjct: 2 VEEEVIKRELTEKVKEAVSKLPEREKLVIQLIFYEELP----AKEVAKILETSVSRVSQL 57
Query: 617 EAKALRKLR 625
+AKAL +LR
Sbjct: 58 KAKALERLR 66
>d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia
coli [TaxId: 562]}
Length = 314
Score = 54.1 bits (129), Expect = 5e-08
Identities = 50/135 (37%), Positives = 73/135 (54%), Gaps = 21/135 (15%)
Query: 705 HETPLFHKSNELYGLFEAKNAIGKSGYVLITEGYMDVIGLSQFGFFANSS---------- 754
ET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G +
Sbjct: 120 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 179
Query: 755 -----------YTCFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 803
C+DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 180 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 239
Query: 804 GYKIFSKKNAFSFDI 818
G + F + + +
Sbjct: 240 GKEAFEARMEQAMPL 254
>d1t6t1_ c.136.1.1 (1:) Hypothetical protein aq_2086 {Aquifex
aeolicus [TaxId: 63363]}
Length = 108
Score = 46.1 bits (109), Expect = 1e-06
Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 32/116 (27%)
Query: 717 YGLFEAKNAI--GKSGYVLITEGYMDVIGLSQFGF--------------------FANSS 754
L E + V++ EG D LS+F
Sbjct: 2 RNLSEWIKELKKASREAVILVEGKNDKKALSKFSIKNVIDLSGKRYADVVDMLEGKWEKV 61
Query: 755 YTCFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSK 810
FD D G R ++ E+ + ++++K+ +
Sbjct: 62 ILLFDLDTHGERINQKMKELLSSQG----------FLVDENFRNFLKKWNIIHIEE 107
>d1nuia1 e.13.1.2 (A:64-255) Primase fragment of primase-helicase
protein {Bacteriophage T7 [TaxId: 10760]}
Length = 192
Score = 42.2 bits (98), Expect = 1e-04
Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 33/147 (22%)
Query: 691 HGISGFLLTTPDPVHETPLFHKSNELYGLFEAKNAIGKSGYVLITEGYMDVIGLSQFGFF 750
+G +++ + + K+ +++TEG +D++ + +
Sbjct: 49 RDQNGNIVSQKVRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVMELQDC 108
Query: 751 ANSS---------------------------YTCFDGDQAGRRAARRALEVCLLYATDDK 783
FD D+AGR+A A +V
Sbjct: 109 KYPVVSLGHGASAAKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQVLP-----AG 163
Query: 784 IIKFLFLPDKYDPDSYIRKFGYKIFSK 810
++ LP K D + + +
Sbjct: 164 KVRVAVLPCK-DANECHLNGHDREIME 189
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli
[TaxId: 562]}
Length = 68
Score = 36.2 bits (84), Expect = 0.002
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 559 DAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 618
+ L+ +R +V + SL + +R +S EE+ D +R
Sbjct: 1 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLS----YEEIAAIMDCPVGTVRSRIF 56
Query: 619 KALRKLR 625
+A +
Sbjct: 57 RAREAID 63
Score = 36.2 bits (84), Expect = 0.002
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 1349 DAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEA 1408
+ L+ +R +V + SL + +R +S EE+ D +R
Sbjct: 1 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLS----YEEIAAIMDCPVGTVRSRIF 56
Query: 1409 KALRKLR 1415
+A +
Sbjct: 57 RAREAID 63
>d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 114
Score = 36.8 bits (85), Expect = 0.003
Identities = 15/103 (14%), Positives = 27/103 (26%), Gaps = 27/103 (26%)
Query: 726 IGKSGYVLITEGYMDVIGLSQFGF--------FANSS----------------YTCFDGD 761
+ + V+I EG D ++ S Y D D
Sbjct: 1 MRRVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADAD 60
Query: 762 QAGRRAARRALEV---CLLYATDDKIIKFLFLPDKYDPDSYIR 801
+AG + R+ + D + P + +R
Sbjct: 61 EAGEKLRRQFRRMFPEAEHLYIDRAYREVAAAPIWHLAQVLLR 103
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR,
C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Length = 70
Score = 33.9 bits (78), Expect = 0.013
Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 1357 RSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 1416
+ ++ + +SLT RE +VL++ +++ + + ++ ++KL
Sbjct: 3 QDQLEQLFSSLTGREQQVLQL-----TIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNV 57
Query: 1417 PSR 1419
S
Sbjct: 58 RSL 60
Score = 32.4 bits (74), Expect = 0.043
Identities = 9/58 (15%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 567 RSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKL 624
+ ++ + +SLT RE +VL++ +++ + + ++ ++KL
Sbjct: 3 QDQLEQLFSSLTGREQQVLQL-----TIRGLMNKQIAGELGIAEVTVKVHRHNIMQKL 55
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL)
{Escherichia coli [TaxId: 562]}
Length = 67
Score = 32.0 bits (73), Expect = 0.051
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 1364 LNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 1419
+N LTPRE +L++ ++ + + ++ D+T ++ L+K++ SR
Sbjct: 4 VNQLTPRERDILKL-----IAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSR 54
Score = 30.5 bits (69), Expect = 0.19
Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 574 LNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKL 624
+N LTPRE +L++ ++ + + ++ D+T ++ L+K+
Sbjct: 4 VNQLTPRERDILKL-----IAQGLPNKMIARRLDITESTVKVHVKHMLKKM 49
>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB
{Human (Homo sapiens) [TaxId: 9606]}
Length = 180
Score = 33.6 bits (76), Expect = 0.079
Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 15/143 (10%)
Query: 32 SREEIENLRKKFKILIKLGK------ERGYLTFSEINDFLPEDIIDHEIIESIIKTFRYM 85
+++EI ++F L+ + R + F +I + E I R
Sbjct: 12 TKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELK--ANPFKERI---CRVF 66
Query: 86 DISVSEHVLDTETL--MLSNITSDDDVEEATEAALSTVDSDFGR--TKDPIKMYMREMGS 141
S ++ L E +LS + + + A D D ++ + + +
Sbjct: 67 STSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTG 126
Query: 142 VELLTRDGEIEIAKRIEEGLKDM 164
TR E+ + I+ L++
Sbjct: 127 EGEDTRLSASEMKQLIDNILEES 149
Score = 33.6 bits (76), Expect = 0.079
Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 15/143 (10%)
Query: 822 SREEIENLRKKFKILIKLGK------ERGYLTFSEINDFLPEDIIDHEIIESIIKTFRYM 875
+++EI ++F L+ + R + F +I + E I R
Sbjct: 12 TKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELK--ANPFKERI---CRVF 66
Query: 876 DISVSEHVLDTETL--MLSNITSDDDVEEATEAALSTVDSDFGR--TKDPIKMYMREMGS 931
S ++ L E +LS + + + A D D ++ + + +
Sbjct: 67 STSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTG 126
Query: 932 VELLTRDGEIEIAKRIEEGLKDM 954
TR E+ + I+ L++
Sbjct: 127 EGEDTRLSASEMKQLIDNILEES 149
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia
amylovora [TaxId: 552]}
Length = 87
Score = 31.4 bits (71), Expect = 0.15
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 1419
L+P+ES+VLR+ + + E+ K+ + + + I + A+ KL +
Sbjct: 22 RLSPKESEVLRL-----FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDND 70
Score = 29.5 bits (66), Expect = 0.55
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKL 624
L+P+ES+VLR+ + + E+ K+ + + + I + A+ KL
Sbjct: 22 RLSPKESEVLRL-----FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 65
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR,
C-terminal domain {Agrobacterium tumefaciens [TaxId:
358]}
Length = 65
Score = 29.4 bits (66), Expect = 0.40
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 1366 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 1419
L P+E+ LR ++ T+EE+ V +R +A+++ S+
Sbjct: 4 WLDPKEATYLRW-----IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSK 52
Score = 27.9 bits (62), Expect = 1.5
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 576 SLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKL 624
L P+E+ LR ++ T+EE+ V +R +A+++
Sbjct: 4 WLDPKEATYLRW-----IAVGKTMEEIADVEGVKYNSVRVKLREAMKRF 47
>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 183
Score = 29.9 bits (66), Expect = 1.4
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 32 SREEIENLRKKFKILIKLGKERGYLTFSEINDFL-PEDIIDHEIIESIIKTF 82
S EIE L + FK + + G + E L + + + + F
Sbjct: 12 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLF 63
Score = 29.9 bits (66), Expect = 1.4
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 822 SREEIENLRKKFKILIKLGKERGYLTFSEINDFL-PEDIIDHEIIESIIKTF 872
S EIE L + FK + + G + E L + + + + F
Sbjct: 12 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLF 63
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis
[TaxId: 1423]}
Length = 67
Score = 27.4 bits (61), Expect = 2.1
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 1367 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 1419
LT RE +V + + D T +E+ + ++ + +R + A++KL R
Sbjct: 5 LTKREREVFEL-----LVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGR 52
Score = 25.9 bits (57), Expect = 7.8
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 577 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKL 624
LT RE +V + + D T +E+ + ++ + +R + A++KL
Sbjct: 5 LTKREREVFEL-----LVQDKTTKEIASELFISEKTVRNHISNAMQKL 47
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus
pyogenes [TaxId: 1314]}
Length = 106
Score = 27.5 bits (61), Expect = 4.2
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 577 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 625
LT ++ + + + + S L E+ +F V+R+ + + + L
Sbjct: 17 LTDKQMNYIELYYADDYS----LAEIADEFGVSRQAVYDNIKRTEKILE 61
Score = 27.5 bits (61), Expect = 4.2
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 1367 LTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLR 1415
LT ++ + + + + S L E+ +F V+R+ + + + L
Sbjct: 17 LTDKQMNYIELYYADDYS----LAEIADEFGVSRQAVYDNIKRTEKILE 61
>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 327
Score = 28.4 bits (63), Expect = 6.7
Identities = 39/224 (17%), Positives = 76/224 (33%), Gaps = 23/224 (10%)
Query: 483 IETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDED 542
+E ++R R IL + + + PE+ KI+ K+ + P G +
Sbjct: 97 LEQQRVMARHLRAILGPILLDQPLDGVTTSLPSPEQLKGKILLKGKKLGGL-LPAGGENG 155
Query: 543 SHLGDFIEDENMLAPSDAALNASMRSVVKDILNSLTPRESKVLRMRFGIEMSSDHTLEEV 602
S D ++ D A+ + ++ K+ L P S ++ + +
Sbjct: 156 SEATDVSDEVEAAEMEDEAVRSQVQHKPKEDKLKLVPELSDMIIYCKSVHFGGFSSPGTS 215
Query: 603 GKQFDVTRERIRQIEAKALRKLRPLAHDWLEQRTHQNEKIIACSSDSSNHNEHVTNNNFP 662
G+ F E E++ALR L+ + ++ +I + + N +
Sbjct: 216 GQAF---YEMASFSESRALRLLQESGNGFVRHNVSCLSRIYPAGWRTDSSNY-----SPV 267
Query: 663 PGFNI--------FHKLLRILQEYLESFLISFFLRNHGISGFLL 698
+N F + YL F N G G++L
Sbjct: 268 EMWNGGCQIVALNFQTPGPEMDVYL-----GCFQDN-GGCGYVL 305
>d1y7qa1 a.28.3.2 (A:37-132) Zinc finger protein 174 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 26.7 bits (59), Expect = 6.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 619 KALRKLRPLAHDWLEQRTHQNEKIIAC 645
+AL +LR L WL+ H E+I+
Sbjct: 26 EALSQLRQLCRQWLQPELHTKEQILEL 52
>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 310
Score = 28.3 bits (63), Expect = 7.2
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 14/107 (13%)
Query: 777 LYA-TDDKIIKFLFLPDKYDPD--SYIRKFGYKIFSKKNAFSF--------DIKSNSREE 825
+Y DD Y + +++ + +N F DIK N E+
Sbjct: 36 IYGPKDDPYHSAPNWRLPYPDKEAAQLQEL--VAVANENEVDFVWAIHPGQDIKWNK-ED 92
Query: 826 IENLRKKFKILIKLGKERGYLTFSEINDFLPEDIIDHEIIESIIKTF 872
+ L KF+ + +LG + F +I+ E++ I + F
Sbjct: 93 RDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQKQAELLNYIDEKF 139
>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId:
11983]}
Length = 502
Score = 28.0 bits (62), Expect = 9.5
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 773 EVCLLYATDDKIIKFLFLPDKYDPD---SYIRKFGYKIFSKKNAFSFDIKSNSREEIENL 829
+ DD+I+ K DP+ + ++++G K + S + L
Sbjct: 330 NSLFSFYGDDEIVST---DIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFL 386
Query: 830 RKKFK 834
R+
Sbjct: 387 RRTVT 391
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.372
Gapped
Lambda K H
0.267 0.0448 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,334,694
Number of extensions: 271689
Number of successful extensions: 1286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1268
Number of HSP's successfully gapped: 123
Length of query: 1432
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1335
Effective length of database: 1,075,786
Effective search space: 1436174310
Effective search space used: 1436174310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.2 bits)