RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15216
(2602 letters)
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 749 bits (1936), Expect = 0.0
Identities = 289/517 (55%), Positives = 363/517 (70%), Gaps = 13/517 (2%)
Query: 620 MALLQISEPDDISVKN-KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
MALLQISEP + + + +++GID GTTNSLVA VR+ EVL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGQSAAPHQRRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYL 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN--SFPYDFQ-NKFGMLHIKT 735
DG I VG +A+ DPKNTISS+KRF+ R L +I PY F ++ GM I+T
Sbjct: 61 EDG-IEVGYEARANAAQDPKNTISSVKRFMGRSLADIQQRYPHLPYQFVASENGMPLIRT 119
Query: 736 ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 795
G+KSP+E+SA+I L++ AE + + GAVITVPAYF+D QRQ TK+AA+LAGLNV
Sbjct: 120 AQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNV 179
Query: 796 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 855
LRLLNEPT+AAIAY LD EG+ AVYDLGGGTFDISIL+ GVF+VL+ GGDS LGG
Sbjct: 180 LRLLNEPTAAAIAYGLDSGQ-EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGG 238
Query: 856 DDFDYCLFSWIVKNAFLK-KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI 914
DDFD+ L WI++ A L +L +D +L+ +R KE LS SV+++V L
Sbjct: 239 DDFDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALWQG----- 293
Query: 915 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 974
I +QF + LV RT+L +AL DA + ++ V++VGGSTR+ + E V FF
Sbjct: 294 EITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG 353
Query: 975 TTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRN 1034
T LTSIDPDK V GAAIQA+ L+GN+ D + LLLDVIPLSLG+ET+GGLVEKII RN
Sbjct: 354 RTPLTSIDPDKVVAIGAAIQADILAGNKP-DSDMLLLDVIPLSLGLETMGGLVEKIIPRN 412
Query: 1035 TTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVT 1094
TTIP + + EFTTFKD QTA+AI VVQGE ELV +C+ LA FELR IPPM AG ARI+VT
Sbjct: 413 TTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVT 472
Query: 1095 YQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
+QVDADGLLS+ A EK +G + I +KP Y + DEI
Sbjct: 473 FQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEI 509
Score = 749 bits (1936), Expect = 0.0
Identities = 289/517 (55%), Positives = 363/517 (70%), Gaps = 13/517 (2%)
Query: 2016 MALLQISEPDDISVKN-KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 2074
MALLQISEP + + + +++GID GTTNSLVA VR+ EVL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGQSAAPHQRRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYL 60
Query: 2075 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN--SFPYDFQ-NKFGMLHIKT 2131
DG I VG +A+ DPKNTISS+KRF+ R L +I PY F ++ GM I+T
Sbjct: 61 EDG-IEVGYEARANAAQDPKNTISSVKRFMGRSLADIQQRYPHLPYQFVASENGMPLIRT 119
Query: 2132 ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 2191
G+KSP+E+SA+I L++ AE + + GAVITVPAYF+D QRQ TK+AA+LAGLNV
Sbjct: 120 AQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNV 179
Query: 2192 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 2251
LRLLNEPT+AAIAY LD EG+ AVYDLGGGTFDISIL+ GVF+VL+ GGDS LGG
Sbjct: 180 LRLLNEPTAAAIAYGLDSGQ-EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGG 238
Query: 2252 DDFDYCLFSWIVKNAFLK-KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI 2310
DDFD+ L WI++ A L +L +D +L+ +R KE LS SV+++V L
Sbjct: 239 DDFDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALWQG----- 293
Query: 2311 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 2370
I +QF + LV RT+L +AL DA + ++ V++VGGSTR+ + E V FF
Sbjct: 294 EITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG 353
Query: 2371 TTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRN 2430
T LTSIDPDK V GAAIQA+ L+GN+ D + LLLDVIPLSLG+ET+GGLVEKII RN
Sbjct: 354 RTPLTSIDPDKVVAIGAAIQADILAGNKP-DSDMLLLDVIPLSLGLETMGGLVEKIIPRN 412
Query: 2431 TTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVT 2490
TTIP + + EFTTFKD QTA+AI VVQGE ELV +C+ LA FELR IPPM AG ARI+VT
Sbjct: 413 TTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVT 472
Query: 2491 YQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 2527
+QVDADGLLS+ A EK +G + I +KP Y + DEI
Sbjct: 473 FQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEI 509
>gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional.
Length = 404
Score = 724 bits (1872), Expect = 0.0
Identities = 256/371 (69%), Positives = 319/371 (85%), Gaps = 3/371 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
+DYSATTP+DPRV +KM+PYL + FGNPASR+H +GW AE+A++ ARN++A LI ADP
Sbjct: 7 LDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADP 66
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
REI++TSGATES+NLAIKGAAHFY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 67 REIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDP 126
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
++NG+I L +LE + DTILVS+M VNNEIGVIQ I IGE+CR +G+IFH DAAQ+VG
Sbjct: 127 QSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVG 186
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
K+ I++ KVDLMSFSAHKIYGPKGIGALY+RR PR R+EAQ+HGGGHE G+RSGTL T
Sbjct: 187 KVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPT 246
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
HQIVGMGEA R+A+ EM E +RI L+ RL+NG+ + IEE+Y+NGD+ R+P NLN+SF
Sbjct: 247 HQIVGMGEAARIAKEEMATENERIRALRDRLWNGI-KDIEEVYLNGDLEQRVPGNLNVSF 305
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 306 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 365
Query: 359 IDFTIKLLKMK 369
ID+ I+L++
Sbjct: 366 IDYAIELVRKS 376
Score = 714 bits (1846), Expect = 0.0
Identities = 253/367 (68%), Positives = 315/367 (85%), Gaps = 3/367 (0%)
Query: 1401 ATTPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREII 1458
ATTP+DPRV +KM+PYL + FGNPASR+H +GW AE+A++ ARN++A LI ADPREI+
Sbjct: 11 ATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIV 70
Query: 1459 WTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG 1518
+TSGATES+NLAIKGAAHFY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P++NG
Sbjct: 71 FTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNG 130
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
+I L +LE + DTILVS+M VNNEIGVIQ I IGE+CR +G+IFH DAAQ+VGK+ I
Sbjct: 131 IIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPI 190
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIV 1638
++ KVDLMSFSAHKIYGPKGIGALY+RR PR R+EAQ+HGGGHE G+RSGTL THQIV
Sbjct: 191 DLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIV 250
Query: 1639 GMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 1698
GMGEA R+A+ EM E +RI L+ RL+NG+ + IEE+Y+NGD+ R+P NLN+SFN++E
Sbjct: 251 GMGEAARIAKEEMATENERIRALRDRLWNGI-KDIEEVYLNGDLEQRVPGNLNVSFNYVE 309
Query: 1699 GESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT 1758
GESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+EID+
Sbjct: 310 GESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYA 369
Query: 1759 IKLLKMK 1765
I+L++
Sbjct: 370 IELVRKS 376
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a separate
clade. The apparent function is to aid assembly of
iron-sulfur cluster proteins. Homologs from Buchnera and
Wolbachia are clearly in the same clade but are highly
derived and score lower than some examples of DnaK
[Protein fate, Protein folding and stabilization].
Length = 599
Score = 677 bits (1750), Expect = 0.0
Identities = 268/497 (53%), Positives = 353/497 (71%), Gaps = 6/497 (1%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GID GTTNSLVA VR+ +PEVL D G L+PS+VRYL DG + VGK+A DPKN
Sbjct: 2 VGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKN 61
Query: 700 TISSIKRFIARDLKNINTNS-FPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 757
TISS+KR + R +++I T S PY F M+ ++T+ G +P+E+SA+I LK+ A
Sbjct: 62 TISSVKRLMGRSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRA 121
Query: 758 ENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE 817
E ++ + GAVITVPAYF+D QRQ TK+AA+LAGLNVLRLLNEPT+AA+AY LDK E
Sbjct: 122 EESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKAS-E 180
Query: 818 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK-KLS 876
GI+AVYDLGGGTFD+SILK GVF+VL+ GGDS LGGDDFD+ L WI+K + L+
Sbjct: 181 GIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISADLN 240
Query: 877 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 936
+D +L+ +R KE L+ SV+++ L K + +F + Q LV +T+ +
Sbjct: 241 PEDQRLLLQAARAAKEALTDAESVEVDFTLDGKDFK-GKLTRDEFEALIQPLVQKTLSIC 299
Query: 937 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQAN 996
+AL DA L++++I V+LVGGSTRM + V+ F LT IDPD+ V GAAIQA+
Sbjct: 300 RRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQAD 359
Query: 997 FLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIA 1056
L+GNR I ++ LLLDV PLSLGIET+GGLVEKII RNT IP + + EFTT+KD QTA+
Sbjct: 360 LLAGNR-IGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMV 418
Query: 1057 IKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKK 1116
I VVQGE ELV++C+ LA FELR IPPM AG ARI+VT+QVDADGLL++ A E+ +G ++
Sbjct: 419 IHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQ 478
Query: 1117 FITIKPFYNMNLDEIKN 1133
I +KP Y ++ +EI+
Sbjct: 479 SIQVKPSYGLSDEEIER 495
Score = 677 bits (1750), Expect = 0.0
Identities = 268/497 (53%), Positives = 353/497 (71%), Gaps = 6/497 (1%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GID GTTNSLVA VR+ +PEVL D G L+PS+VRYL DG + VGK+A DPKN
Sbjct: 2 VGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKN 61
Query: 2096 TISSIKRFIARDLKNINTNS-FPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 2153
TISS+KR + R +++I T S PY F M+ ++T+ G +P+E+SA+I LK+ A
Sbjct: 62 TISSVKRLMGRSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRA 121
Query: 2154 ENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE 2213
E ++ + GAVITVPAYF+D QRQ TK+AA+LAGLNVLRLLNEPT+AA+AY LDK E
Sbjct: 122 EESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKAS-E 180
Query: 2214 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK-KLS 2272
GI+AVYDLGGGTFD+SILK GVF+VL+ GGDS LGGDDFD+ L WI+K + L+
Sbjct: 181 GIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISADLN 240
Query: 2273 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 2332
+D +L+ +R KE L+ SV+++ L K + +F + Q LV +T+ +
Sbjct: 241 PEDQRLLLQAARAAKEALTDAESVEVDFTLDGKDFK-GKLTRDEFEALIQPLVQKTLSIC 299
Query: 2333 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQAN 2392
+AL DA L++++I V+LVGGSTRM + V+ F LT IDPD+ V GAAIQA+
Sbjct: 300 RRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQAD 359
Query: 2393 FLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIA 2452
L+GNR I ++ LLLDV PLSLGIET+GGLVEKII RNT IP + + EFTT+KD QTA+
Sbjct: 360 LLAGNR-IGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMV 418
Query: 2453 IKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKK 2512
I VVQGE ELV++C+ LA FELR IPPM AG ARI+VT+QVDADGLL++ A E+ +G ++
Sbjct: 419 IHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQ 478
Query: 2513 FITIKPFYNMNLDEIKN 2529
I +KP Y ++ +EI+
Sbjct: 479 SIQVKPSYGLSDEEIER 495
>gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS. This model represents
IscS, one of several cysteine desulfurases from a larger
protein family designated (misleadingly, in this case)
class V aminotransferases. IscS is one of at least 6
enzymes characteristic of the IscSUA-hscAB-fsx system of
iron-sulfur cluster assembly. Scoring almost as well as
proteobacterial sequences included in the model are
mitochondrial cysteine desulfurases, apparently from an
analogous system in eukaryotes. The sulfur, taken from
cysteine, may be used in other systems as well, such as
tRNA base modification and biosynthesis of other
cofactors [Biosynthesis of cofactors, prosthetic groups,
and carriers, Other, Protein synthesis, tRNA and rRNA
base modification].
Length = 402
Score = 642 bits (1658), Expect = 0.0
Identities = 259/369 (70%), Positives = 312/369 (84%), Gaps = 1/369 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+DY+ATTP+DPRV +KM+PYL +FGNPASR+H +GW AE+A+E ARN+VA+LI AD RE
Sbjct: 7 LDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSRE 66
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
I++TSGATESNNLAIKG AHFYK +G HIIT +TEHK+VLD+ R LE +GF VTYL PK+
Sbjct: 67 IVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKS 126
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
NGLI L +L+ I DTILVS+M VNNEIGVIQ I IGE+CR + V FH DAAQ+VGKI
Sbjct: 127 NGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKI 186
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
IN+ KVDLMS S HKIYGPKGIGALY+RR PR R+EA IHGGGHE G+RSGTL THQ
Sbjct: 187 PINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQ 246
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVGMGEAFR+A+ EM ++ +L L+ RL NG+ +SIEE+Y+NGD+ +R+P NLN+SFN+
Sbjct: 247 IVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGI-KSIEEVYLNGDLEHRVPGNLNVSFNY 305
Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
+EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRFTIGRFTTE+EID
Sbjct: 306 VEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEID 365
Query: 361 FTIKLLKMK 369
+ +KL+K
Sbjct: 366 YAVKLVKSA 374
Score = 634 bits (1636), Expect = 0.0
Identities = 257/365 (70%), Positives = 308/365 (84%), Gaps = 1/365 (0%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
ATTP+DPRV +KM+PYL +FGNPASR+H +GW AE+A+E ARN+VA+LI AD REI++T
Sbjct: 11 ATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFT 70
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 1520
SGATESNNLAIKG AHFYK +G HIIT +TEHK+VLD+ R LE +GF VTYL PK+NGLI
Sbjct: 71 SGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLI 130
Query: 1521 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI 1580
L +L+ I DTILVS+M VNNEIGVIQ I IGE+CR + V FH DAAQ+VGKI IN+
Sbjct: 131 DLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINV 190
Query: 1581 QNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 1640
KVDLMS S HKIYGPKGIGALY+RR PR R+EA IHGGGHE G+RSGTL THQIVGM
Sbjct: 191 NELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGM 250
Query: 1641 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 1700
GEAFR+A+ EM ++ +L L+ RL NG+ +SIEE+Y+NGD+ +R+P NLN+SFN++EGE
Sbjct: 251 GEAFRIAKEEMAQDTAHVLALRDRLLNGI-KSIEEVYLNGDLEHRVPGNLNVSFNYVEGE 309
Query: 1701 SLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK 1760
SL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRFTIGRFTTE+EID+ +K
Sbjct: 310 SLIMALKDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVK 369
Query: 1761 LLKMK 1765
L+K
Sbjct: 370 LVKSA 374
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 582 bits (1503), Expect = 0.0
Identities = 215/371 (57%), Positives = 276/371 (74%), Gaps = 7/371 (1%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D +ATTP+DP V++ M+PYL FGNP+S H +G A KA+E+AR ++A+L+ ADP E
Sbjct: 5 LDNAATTPVDPEVLEAMLPYLTEVFGNPSSL-HSFGREARKAVEEAREQIAKLLGADPEE 63
Query: 61 IIWTSGATESNNLAIKGAAHFY--KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
II+TSGATESNNLAIKGAA Y ++GKHIIT EH +VL++ R LE GF VTYL
Sbjct: 64 IIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPV 123
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+NGL+ L QLEE + DTILVS+M NNE G IQPI EIGE+C+ +G++FH DA QAVG
Sbjct: 124 DSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVG 183
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
KI I+++ VDL+SFSAHK GPKGIGALY+R P R+E IHGGG E GLRSGT
Sbjct: 184 KIPIDLEELGVDLLSFSAHKFGGPKGIGALYVR--PGVRLEPLIHGGGQERGLRSGTENV 241
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
IVG G+A +A E++EE R+ L+ RL +GL+E I ++Y+NGD R+P+ LN SF
Sbjct: 242 PGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSF 301
Query: 299 NFIEGESLLMA--IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
+EGESLL+A + IAVS+GSAC+S SLEPS+VLRA+G ++ELAH SIRF++GRFTTE
Sbjct: 302 PGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTE 361
Query: 357 KEIDFTIKLLK 367
+EID + LK
Sbjct: 362 EEIDAAAEALK 372
Score = 574 bits (1483), Expect = 0.0
Identities = 214/367 (58%), Positives = 273/367 (74%), Gaps = 7/367 (1%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
ATTP+DP V++ M+PYL FGNP+S H +G A KA+E+AR ++A+L+ ADP EII+T
Sbjct: 9 ATTPVDPEVLEAMLPYLTEVFGNPSSL-HSFGREARKAVEEAREQIAKLLGADPEEIIFT 67
Query: 1461 SGATESNNLAIKGAAHFY--KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG 1518
SGATESNNLAIKGAA Y ++GKHIIT EH +VL++ R LE GF VTYL +NG
Sbjct: 68 SGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNG 127
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
L+ L QLEE + DTILVS+M NNE G IQPI EIGE+C+ +G++FH DA QAVGKI I
Sbjct: 128 LVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPI 187
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIV 1638
+++ VDL+SFSAHK GPKGIGALY+R P R+E IHGGG E GLRSGT IV
Sbjct: 188 DLEELGVDLLSFSAHKFGGPKGIGALYVR--PGVRLEPLIHGGGQERGLRSGTENVPGIV 245
Query: 1639 GMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 1698
G G+A +A E++EE R+ L+ RL +GL+E I ++Y+NGD R+P+ LN SF +E
Sbjct: 246 GFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVE 305
Query: 1699 GESLLMA--IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 1756
GESLL+A + IAVS+GSAC+S SLEPS+VLRA+G ++ELAH SIRF++GRFTTE+EID
Sbjct: 306 GESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEID 365
Query: 1757 FTIKLLK 1763
+ LK
Sbjct: 366 AAAEALK 372
>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase.
Length = 364
Score = 566 bits (1462), Expect = 0.0
Identities = 224/362 (61%), Positives = 273/362 (75%), Gaps = 2/362 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D ATTPIDPRV+D M+P+L FGNP SR H+YGW +E A+EKAR +VA LI ADP+E
Sbjct: 3 LDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKE 62
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
II+TSGATESNNLAIKG HFYK + KH+IT QTEHK VLDS R L+ +GF VTYL K+
Sbjct: 63 IIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS 122
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
+GL+ L +L I DT LVSVM VNNEIGVIQP+ EIGELCR K V+FH DAAQAVGKI
Sbjct: 123 DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKI 182
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
+++ + VDLMS S HKIYGPKG+GALY+RR PR R+E + GGG E G RSGT T
Sbjct: 183 PVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPL 242
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING--DMNNRIPHNLNISF 298
+VG+G A LA EM + K + L++RL NGL + + +NG D R P LN+SF
Sbjct: 243 VVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSF 302
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
++EGESLLM +K++AVSSGSACTSASLEPSYVLRALG +E+AH S+R +GRFTTE+E
Sbjct: 303 AYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEE 362
Query: 359 ID 360
+D
Sbjct: 363 VD 364
Score = 560 bits (1444), Expect = 0.0
Identities = 223/358 (62%), Positives = 271/358 (75%), Gaps = 2/358 (0%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
ATTPIDPRV+D M+P+L FGNP SR H+YGW +E A+EKAR +VA LI ADP+EII+T
Sbjct: 7 ATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFT 66
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 1520
SGATESNNLAIKG HFYK + KH+IT QTEHK VLDS R L+ +GF VTYL K++GL+
Sbjct: 67 SGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLV 126
Query: 1521 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI 1580
L +L I DT LVSVM VNNEIGVIQP+ EIGELCR K V+FH DAAQAVGKI +++
Sbjct: 127 DLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDV 186
Query: 1581 QNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 1640
+ VDLMS S HKIYGPKG+GALY+RR PR R+E + GGG E G RSGT T +VG+
Sbjct: 187 DDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGL 246
Query: 1641 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING--DMNNRIPHNLNISFNFIE 1698
G A LA EM + K + L++RL NGL + + +NG D R P LN+SF ++E
Sbjct: 247 GAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVE 306
Query: 1699 GESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 1756
GESLLM +K++AVSSGSACTSASLEPSYVLRALG +E+AH S+R +GRFTTE+E+D
Sbjct: 307 GESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold many
proteins. Hsp70 assisted folding involves repeated cycles
of substrate binding and release. Hsp70 activity is ATP
dependent. Hsp70 proteins are made up of two regions: the
amino terminus is the ATPase domain and the carboxyl
terminus is the substrate binding region.
Length = 598
Score = 488 bits (1259), Expect = e-153
Identities = 220/508 (43%), Positives = 308/508 (60%), Gaps = 19/508 (3%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VA++ PEV+ + G PS+V + P + VG+ AK +PKN
Sbjct: 2 IGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKER-LVGQAAKRQAVTNPKN 60
Query: 700 TISSIKRFIARDLKNINTNS----FPYDFQ---NKFGMLHIKTISGIKSPIEISAQIFIT 752
T+ S+KR I R + PY N + ++ + +P +ISA +
Sbjct: 61 TVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQK 120
Query: 753 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 812
LK+ AE + + AVITVPAYFND QRQ TK+A ++AGLNVLR++NEPT+AA+AY LD
Sbjct: 121 LKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGLD 180
Query: 813 KNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFL 872
K E V+DLGGGTFD+SIL+ +GVF+VL+ GD++LGG+DFD L V+ F
Sbjct: 181 KKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEE-FK 239
Query: 873 KK----LSYKDVNILMIKSREIK---ELLSYQSSVKLNVK--LSDKKIVNITIDMKQFFT 923
KK LS + ++ K EL S Q+ + L ++D K V+ T+ +F
Sbjct: 240 KKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVSGTLTRAKFEE 299
Query: 924 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 983
+ L RT+ KAL DA L+ +I+ V+LVGGSTR+ + E V FF ++P
Sbjct: 300 LCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGVNP 359
Query: 984 DKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSG 1043
D+AV GAA+QA LSG + D LLLDV PLSLGIET+GG++ K+I RNTTIP S
Sbjct: 360 DEAVAIGAAVQAGVLSGTFDVKD-VLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQ 418
Query: 1044 EFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLL 1103
F+T DNQTA+ I+V QGE E+ + ++L +FEL IPP P G +I+VT+ +DA+G+L
Sbjct: 419 IFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGIL 478
Query: 1104 SIFAYEKISGKKKFITIKPFYNMNLDEI 1131
++ A +K +GK++ ITI ++ DEI
Sbjct: 479 TVSAKDKGTGKEQKITITASSGLSDDEI 506
Score = 488 bits (1259), Expect = e-153
Identities = 220/508 (43%), Positives = 308/508 (60%), Gaps = 19/508 (3%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VA++ PEV+ + G PS+V + P + VG+ AK +PKN
Sbjct: 2 IGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKER-LVGQAAKRQAVTNPKN 60
Query: 2096 TISSIKRFIARDLKNINTNS----FPYDFQ---NKFGMLHIKTISGIKSPIEISAQIFIT 2148
T+ S+KR I R + PY N + ++ + +P +ISA +
Sbjct: 61 TVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQK 120
Query: 2149 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 2208
LK+ AE + + AVITVPAYFND QRQ TK+A ++AGLNVLR++NEPT+AA+AY LD
Sbjct: 121 LKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGLD 180
Query: 2209 KNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFL 2268
K E V+DLGGGTFD+SIL+ +GVF+VL+ GD++LGG+DFD L V+ F
Sbjct: 181 KKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEE-FK 239
Query: 2269 KK----LSYKDVNILMIKSREIK---ELLSYQSSVKLNVK--LSDKKIVNITIDMKQFFT 2319
KK LS + ++ K EL S Q+ + L ++D K V+ T+ +F
Sbjct: 240 KKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVSGTLTRAKFEE 299
Query: 2320 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 2379
+ L RT+ KAL DA L+ +I+ V+LVGGSTR+ + E V FF ++P
Sbjct: 300 LCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGVNP 359
Query: 2380 DKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSG 2439
D+AV GAA+QA LSG + D LLLDV PLSLGIET+GG++ K+I RNTTIP S
Sbjct: 360 DEAVAIGAAVQAGVLSGTFDVKD-VLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQ 418
Query: 2440 EFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLL 2499
F+T DNQTA+ I+V QGE E+ + ++L +FEL IPP P G +I+VT+ +DA+G+L
Sbjct: 419 IFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGIL 478
Query: 2500 SIFAYEKISGKKKFITIKPFYNMNLDEI 2527
++ A +K +GK++ ITI ++ DEI
Sbjct: 479 TVSAKDKGTGKEQKITITASSGLSDDEI 506
>gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS. Members of this
protein family are NifS, one of several related families
of cysteine desulfurase involved in iron-sulfur (FeS)
cluster biosynthesis. NifS is part of the NIF system,
usually associated with other nif genes involved in
nitrogenase expression and nitrogen fixation. The
protein family is given a fairly broad interpretation
here. It includes a clade nearly always found in
extended nitrogen fixation genomic regions, plus a
second clade more closely related to the first than to
IscS and also part of NifS-like/NifU-like systems. This
model does not extend to a more distantly clade found in
the epsilon proteobacteria such as Helicobacter pylori,
also named NifS in the literature, built instead in
TIGR03403.
Length = 379
Score = 472 bits (1218), Expect = e-150
Identities = 175/368 (47%), Positives = 245/368 (66%), Gaps = 6/368 (1%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D +ATT +DP V++ M+PY FGNP+S H +G KA+E+AR +VA+L+ A+P E
Sbjct: 3 LDNNATTRVDPEVLEAMLPYFTEYFGNPSSM-HSFGGEVGKAVEEAREQVAKLLGAEPDE 61
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
II+TSG TES+N AIK A ++ +HIIT EH +VL + LE G++VTYL
Sbjct: 62 IIFTSGGTESDNTAIKSALAAQPEK-RHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE 120
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
G + L +L I DT LVSVM NNE G I PI EIGE+ + +G +FH DA QAVGKI
Sbjct: 121 EGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKI 180
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
I+++ +D++S S HK++GPKG+GALYIR+ TR + GG E G R+GT
Sbjct: 181 PIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKG--TRFRPLLRGGHQERGRRAGTENVPG 238
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVG+G+A LA ++EE R+ L+ RL GL+ I + +NGD R+P+ +NISF +
Sbjct: 239 IVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEY 298
Query: 301 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
IEGE++L+ + + I SSGSACTS SLEPS+VLRA+G AH SIRF++ R+ TE++
Sbjct: 299 IEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEED 358
Query: 359 IDFTIKLL 366
ID+ +++L
Sbjct: 359 IDYVLEVL 366
Score = 465 bits (1198), Expect = e-148
Identities = 174/364 (47%), Positives = 242/364 (66%), Gaps = 6/364 (1%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
ATT +DP V++ M+PY FGNP+S H +G KA+E+AR +VA+L+ A+P EII+T
Sbjct: 7 ATTRVDPEVLEAMLPYFTEYFGNPSSM-HSFGGEVGKAVEEAREQVAKLLGAEPDEIIFT 65
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 1520
SG TES+N AIK A ++ +HIIT EH +VL + LE G++VTYL G +
Sbjct: 66 SGGTESDNTAIKSALAAQPEK-RHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRL 124
Query: 1521 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI 1580
L +L I DT LVSVM NNE G I PI EIGE+ + +G +FH DA QAVGKI I++
Sbjct: 125 DLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDL 184
Query: 1581 QNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 1640
+ +D++S S HK++GPKG+GALYIR+ TR + GG E G R+GT IVG+
Sbjct: 185 KEMNIDMLSLSGHKLHGPKGVGALYIRKG--TRFRPLLRGGHQERGRRAGTENVPGIVGL 242
Query: 1641 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 1700
G+A LA ++EE R+ L+ RL GL+ I + +NGD R+P+ +NISF +IEGE
Sbjct: 243 GKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGE 302
Query: 1701 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT 1758
++L+ + + I SSGSACTS SLEPS+VLRA+G AH SIRF++ R+ TE++ID+
Sbjct: 303 AILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYV 362
Query: 1759 IKLL 1762
+++L
Sbjct: 363 LEVL 366
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 476 bits (1228), Expect = e-149
Identities = 223/500 (44%), Positives = 303/500 (60%), Gaps = 25/500 (5%)
Query: 640 IGIDFGTTNSLVAIVRNN-IPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 698
IGID GTTNS+VA++R +P+V+++ G L PS+V + +G++ VG+ AK +P+
Sbjct: 8 IGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPE 67
Query: 699 NTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 758
NTI SIKR I R N + K +P EISA I LK+ AE
Sbjct: 68 NTIFSIKRKIGR---GSNGLKISVEVDGK-----------KYTPEEISAMILTKLKEDAE 113
Query: 759 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 818
+ ++ AVITVPAYFND QRQ TK+AA++AGLNVLRL+NEPT+AA+AY LDK E
Sbjct: 114 AYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKGK-EK 172
Query: 819 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS-- 876
VYDLGGGTFD+S+L+ +GVF+VL+ GGD++LGGDDFD L ++V K
Sbjct: 173 TVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDL 232
Query: 877 ---YKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRT 932
+ L + + K LS + +N+ + + + +F + L+ RT
Sbjct: 233 RSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERT 292
Query: 933 ILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAA 992
I +AL DA L DI+ VILVGGSTR+ + E V FF SI+PD+AV GAA
Sbjct: 293 IEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAA 352
Query: 993 IQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQ 1052
IQA LSG + LLLDVIPLSLGIET+GG+ II RNTTIP S EF+T D Q
Sbjct: 353 IQAAVLSGE---VPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQ 409
Query: 1053 TAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKIS 1112
TA+AI V QGE E+ + + L FEL IPP P G +I+VT+ +DA+G+L++ A + +
Sbjct: 410 TAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGT 469
Query: 1113 GKKKFITIKPFYNMNLDEIK 1132
GK++ ITIK ++ +EI+
Sbjct: 470 GKEQSITIKASSGLSDEEIE 489
Score = 476 bits (1228), Expect = e-149
Identities = 223/500 (44%), Positives = 303/500 (60%), Gaps = 25/500 (5%)
Query: 2036 IGIDFGTTNSLVAIVRNN-IPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 2094
IGID GTTNS+VA++R +P+V+++ G L PS+V + +G++ VG+ AK +P+
Sbjct: 8 IGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPE 67
Query: 2095 NTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 2154
NTI SIKR I R N + K +P EISA I LK+ AE
Sbjct: 68 NTIFSIKRKIGR---GSNGLKISVEVDGK-----------KYTPEEISAMILTKLKEDAE 113
Query: 2155 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 2214
+ ++ AVITVPAYFND QRQ TK+AA++AGLNVLRL+NEPT+AA+AY LDK E
Sbjct: 114 AYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKGK-EK 172
Query: 2215 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS-- 2272
VYDLGGGTFD+S+L+ +GVF+VL+ GGD++LGGDDFD L ++V K
Sbjct: 173 TVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDL 232
Query: 2273 ---YKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRT 2328
+ L + + K LS + +N+ + + + +F + L+ RT
Sbjct: 233 RSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERT 292
Query: 2329 ILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAA 2388
I +AL DA L DI+ VILVGGSTR+ + E V FF SI+PD+AV GAA
Sbjct: 293 IEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAA 352
Query: 2389 IQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQ 2448
IQA LSG + LLLDVIPLSLGIET+GG+ II RNTTIP S EF+T D Q
Sbjct: 353 IQAAVLSGE---VPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQ 409
Query: 2449 TAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKIS 2508
TA+AI V QGE E+ + + L FEL IPP P G +I+VT+ +DA+G+L++ A + +
Sbjct: 410 TAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGT 469
Query: 2509 GKKKFITIKPFYNMNLDEIK 2528
GK++ ITIK ++ +EI+
Sbjct: 470 GKEQSITIKASSGLSDEEIE 489
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 444 bits (1145), Expect = e-141
Identities = 180/362 (49%), Positives = 237/362 (65%), Gaps = 10/362 (2%)
Query: 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDP 697
++IGID GTTNSLVA V + ++L D+ G L+PS+V Y DG I VG A DP
Sbjct: 1 LAIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHY-GDGGISVGHDALKLAISDP 59
Query: 698 KNTISSIKRFIARDLKNINTNSF--PYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKK 755
KNTISS+KR + + +++I + P G++ T G +P+E+SA+I LK+
Sbjct: 60 KNTISSVKRLMGKSIEDIKKSFPYLPILEGKNGGIILFHTQQGTVTPVEVSAEILKALKE 119
Query: 756 IAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI 815
AE ++ I GAVITVPAYF+D QRQ TK+AA+LAGLNVLRLLNEPT+AA+AY LDK
Sbjct: 120 RAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDKKK 179
Query: 816 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKL 875
EGI+AVYDLGGGTFD+SILK GVF+VL+ GGDS LGGDDFD L ++K LK L
Sbjct: 180 -EGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELLLKKYGLKSL 238
Query: 876 -SYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTIL 934
S +D L++ +R+ KE LS V++ + D K TI ++F + LV +T+
Sbjct: 239 ISDEDQAELLLIARKAKEALSGAEEVEVRGQ--DFK---CTITREEFEKLIDPLVKKTLN 293
Query: 935 LSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQ 994
+ +AL DA L++KDI VILVGGSTR+ + E VS FF L I+PD+ V GAA+Q
Sbjct: 294 ICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLCDINPDEVVAIGAALQ 353
Query: 995 AN 996
AN
Sbjct: 354 AN 355
Score = 444 bits (1145), Expect = e-141
Identities = 180/362 (49%), Positives = 237/362 (65%), Gaps = 10/362 (2%)
Query: 2034 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDP 2093
++IGID GTTNSLVA V + ++L D+ G L+PS+V Y DG I VG A DP
Sbjct: 1 LAIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHY-GDGGISVGHDALKLAISDP 59
Query: 2094 KNTISSIKRFIARDLKNINTNSF--PYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKK 2151
KNTISS+KR + + +++I + P G++ T G +P+E+SA+I LK+
Sbjct: 60 KNTISSVKRLMGKSIEDIKKSFPYLPILEGKNGGIILFHTQQGTVTPVEVSAEILKALKE 119
Query: 2152 IAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI 2211
AE ++ I GAVITVPAYF+D QRQ TK+AA+LAGLNVLRLLNEPT+AA+AY LDK
Sbjct: 120 RAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDKKK 179
Query: 2212 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKL 2271
EGI+AVYDLGGGTFD+SILK GVF+VL+ GGDS LGGDDFD L ++K LK L
Sbjct: 180 -EGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELLLKKYGLKSL 238
Query: 2272 -SYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTIL 2330
S +D L++ +R+ KE LS V++ + D K TI ++F + LV +T+
Sbjct: 239 ISDEDQAELLLIARKAKEALSGAEEVEVRGQ--DFK---CTITREEFEKLIDPLVKKTLN 293
Query: 2331 LSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQ 2390
+ +AL DA L++KDI VILVGGSTR+ + E VS FF L I+PD+ V GAA+Q
Sbjct: 294 ICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLCDINPDEVVAIGAALQ 353
Query: 2391 AN 2392
AN
Sbjct: 354 AN 355
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this family
are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone
system. All members of the seed alignment were taken from
completely sequenced bacterial or archaeal genomes and
(except for Mycoplasma sequence) found clustered with
other genes of this systems. This model excludes DnaK
homologs that are not DnaK itself, such as the heat shock
cognate protein HscA (TIGR01991). However, it is not
designed to distinguish among DnaK paralogs in
eukaryotes. Note that a number of dnaK genes have shadow
ORFs in the same reverse (relative to dnaK) reading
frame, a few of which have been assigned glutamate
dehydrogenase activity. The significance of this
observation is unclear; lengths of such shadow ORFs are
highly variable as if the presumptive protein product is
not conserved [Protein fate, Protein folding and
stabilization].
Length = 595
Score = 447 bits (1152), Expect = e-139
Identities = 222/508 (43%), Positives = 306/508 (60%), Gaps = 21/508 (4%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VA++ P V+ + G PS+V + +G+ VG+ AK +P+N
Sbjct: 3 IGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPEN 62
Query: 700 TISSIKRFIARDLKNI--NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 757
TI SIKRF+ R + PY G + +K +P EISA I LKK A
Sbjct: 63 TIYSIKRFMGRRFDEVTEEAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDA 122
Query: 758 ENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE 817
E + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK+ +
Sbjct: 123 EAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKD 182
Query: 818 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK--- 874
V+DLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + W+ F K+
Sbjct: 183 EKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADE-FKKEEGI 241
Query: 875 -LSYKDVNILMIKSREIKEL----LSYQSSVKLN-----VKLSDKKIVNITIDMKQFFTI 924
LS KD + + + +E E LS S ++N S K + +T+ +F +
Sbjct: 242 DLS-KD-KMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEEL 299
Query: 925 TQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPD 984
T LV RT +AL DA L+ DI+ VILVGGSTR+ + E V +FF S++PD
Sbjct: 300 TADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPD 359
Query: 985 KAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGE 1044
+ V GAAIQ L G+ + LLLDV PLSLGIET+GG++ K+I RNTTIP S
Sbjct: 360 EVVAIGAAIQGGVLKGDVK---DVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQV 416
Query: 1045 FTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLS 1104
F+T DNQ A+ I V+QGE + + + L FEL IPP P G +I+VT+ +DA+G+L
Sbjct: 417 FSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILH 476
Query: 1105 IFAYEKISGKKKFITIKPFYNMNLDEIK 1132
+ A +K +GK++ ITI ++ +EI+
Sbjct: 477 VSAKDKGTGKEQSITITASSGLSEEEIE 504
Score = 447 bits (1152), Expect = e-139
Identities = 222/508 (43%), Positives = 306/508 (60%), Gaps = 21/508 (4%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VA++ P V+ + G PS+V + +G+ VG+ AK +P+N
Sbjct: 3 IGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPEN 62
Query: 2096 TISSIKRFIARDLKNI--NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 2153
TI SIKRF+ R + PY G + +K +P EISA I LKK A
Sbjct: 63 TIYSIKRFMGRRFDEVTEEAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDA 122
Query: 2154 ENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE 2213
E + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK+ +
Sbjct: 123 EAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKD 182
Query: 2214 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK--- 2270
V+DLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + W+ F K+
Sbjct: 183 EKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADE-FKKEEGI 241
Query: 2271 -LSYKDVNILMIKSREIKEL----LSYQSSVKLN-----VKLSDKKIVNITIDMKQFFTI 2320
LS KD + + + +E E LS S ++N S K + +T+ +F +
Sbjct: 242 DLS-KD-KMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEEL 299
Query: 2321 TQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPD 2380
T LV RT +AL DA L+ DI+ VILVGGSTR+ + E V +FF S++PD
Sbjct: 300 TADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPD 359
Query: 2381 KAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGE 2440
+ V GAAIQ L G+ + LLLDV PLSLGIET+GG++ K+I RNTTIP S
Sbjct: 360 EVVAIGAAIQGGVLKGDVK---DVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQV 416
Query: 2441 FTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLS 2500
F+T DNQ A+ I V+QGE + + + L FEL IPP P G +I+VT+ +DA+G+L
Sbjct: 417 FSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILH 476
Query: 2501 IFAYEKISGKKKFITIKPFYNMNLDEIK 2528
+ A +K +GK++ ITI ++ +EI+
Sbjct: 477 VSAKDKGTGKEQSITITASSGLSEEEIE 504
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 444 bits (1146), Expect = e-137
Identities = 225/515 (43%), Positives = 310/515 (60%), Gaps = 35/515 (6%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAK---ITQNID 696
IGID GTTNS VA++ P+V+++ G PS+V + DG+ VG+ AK +T +
Sbjct: 5 IGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVT---N 61
Query: 697 PKNTISSIKRFIARDLKNIN--TNSFPYDFQNKFGMLHIKTISGIK-SPIEISAQIFITL 753
P+NTI SIKR + R + + PY I G K +P EISA I L
Sbjct: 62 PENTIFSIKRLMGRRDEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKL 121
Query: 754 KKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDK 813
KK AE+ + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK
Sbjct: 122 KKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 181
Query: 814 NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 873
E I VYDLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + ++ F K
Sbjct: 182 KGDEKI-LVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADE-FKK 239
Query: 874 K----LSYKDVNILMIKSREI-----KELLSYQSSVKLNVKL-------SDKKIVNITID 917
+ L KD + + + +E EL S Q + + L S K + I +
Sbjct: 240 ENGIDLR-KDK-MALQRLKEAAEKAKIELSSAQQT---EINLPFITADASGPKHLEIKLT 294
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
+F +T+ LV RTI +AL DA L++ DI+ VILVGGSTRM + E V FF
Sbjct: 295 RAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEP 354
Query: 978 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 1037
++PD+ V GAAIQ L+G+ + LLLDV PLSLGIET+GG++ K+I RNTTI
Sbjct: 355 NKGVNPDEVVAIGAAIQGGVLAGDV---KDVLLLDVTPLSLGIETLGGVMTKLIERNTTI 411
Query: 1038 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097
P S F+T DNQ A+ I V+QGE E+ + + L F L IPP P G +I+VT+ +
Sbjct: 412 PTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDI 471
Query: 1098 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIK 1132
DA+G++ + A +K +GK++ ITI ++ +EI+
Sbjct: 472 DANGIVHVSAKDKGTGKEQSITITASSGLSDEEIE 506
Score = 444 bits (1146), Expect = e-137
Identities = 225/515 (43%), Positives = 310/515 (60%), Gaps = 35/515 (6%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAK---ITQNID 2092
IGID GTTNS VA++ P+V+++ G PS+V + DG+ VG+ AK +T +
Sbjct: 5 IGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVT---N 61
Query: 2093 PKNTISSIKRFIARDLKNIN--TNSFPYDFQNKFGMLHIKTISGIK-SPIEISAQIFITL 2149
P+NTI SIKR + R + + PY I G K +P EISA I L
Sbjct: 62 PENTIFSIKRLMGRRDEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKL 121
Query: 2150 KKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDK 2209
KK AE+ + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK
Sbjct: 122 KKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 181
Query: 2210 NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 2269
E I VYDLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + ++ F K
Sbjct: 182 KGDEKI-LVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADE-FKK 239
Query: 2270 K----LSYKDVNILMIKSREI-----KELLSYQSSVKLNVKL-------SDKKIVNITID 2313
+ L KD + + + +E EL S Q + + L S K + I +
Sbjct: 240 ENGIDLR-KDK-MALQRLKEAAEKAKIELSSAQQT---EINLPFITADASGPKHLEIKLT 294
Query: 2314 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 2373
+F +T+ LV RTI +AL DA L++ DI+ VILVGGSTRM + E V FF
Sbjct: 295 RAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEP 354
Query: 2374 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 2433
++PD+ V GAAIQ L+G+ + LLLDV PLSLGIET+GG++ K+I RNTTI
Sbjct: 355 NKGVNPDEVVAIGAAIQGGVLAGDV---KDVLLLDVTPLSLGIETLGGVMTKLIERNTTI 411
Query: 2434 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 2493
P S F+T DNQ A+ I V+QGE E+ + + L F L IPP P G +I+VT+ +
Sbjct: 412 PTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDI 471
Query: 2494 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIK 2528
DA+G++ + A +K +GK++ ITI ++ +EI+
Sbjct: 472 DANGIVHVSAKDKGTGKEQSITITASSGLSDEEIE 506
>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA. This model
describes DndA, a protein related to IscS and part of a
larger family of cysteine desulfurases. It is encoded,
typically, divergently from a conserved, sparsely
distributed operon for sulfur modification of DNA. This
modification system is designated dnd, after the
phenotype of DNA degradation during electrophoresis. The
system is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndB is described
as a putative ATPase [DNA metabolism,
Restriction/modification].
Length = 353
Score = 406 bits (1046), Expect = e-128
Identities = 170/353 (48%), Positives = 239/353 (67%), Gaps = 6/353 (1%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D++ATTPIDP V + M+P+L +FGNP+SR H +G A+KA+E+AR +VA+ + AD E
Sbjct: 2 LDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEE 61
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
+I+TSGATESNNLAI G A +++G KHIIT EH +VL+ IR LE +GF VTYL
Sbjct: 62 VIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVD 121
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
+G I + +L + I DT+LVS+M VNNE G IQPI EI E+ + FH DAAQ VGK
Sbjct: 122 ESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGK 181
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRN--PRTRIEAQIHGGGHEYGLRSGTLA 237
I +++ ++DL+S S HKIYGPKGIGAL IR+ P+ ++ + GGG E GLR GTL
Sbjct: 182 ITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLP 241
Query: 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 297
H IVGMGEA +AR + ++ ++ +L + L + +NGD IPH LN S
Sbjct: 242 VHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTL--GVKLNGDPAETIPHILNFS 299
Query: 298 FNFIEGESLLMAIK-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT 349
+ + E+L++ ++ D AVS+GSAC+S+ EPS+VL+A+G + + A +IRF+
Sbjct: 300 IDGVNSEALIVNLRADAAVSTGSACSSSKYEPSHVLQAMGLDTDRARGAIRFS 352
Score = 403 bits (1037), Expect = e-127
Identities = 169/349 (48%), Positives = 235/349 (67%), Gaps = 6/349 (1%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
ATTPIDP V + M+P+L +FGNP+SR H +G A+KA+E+AR +VA+ + AD E+I+T
Sbjct: 6 ATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFT 65
Query: 1461 SGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 1519
SGATESNNLAI G A +++G KHIIT EH +VL+ IR LE +GF VTYL +G
Sbjct: 66 SGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGR 125
Query: 1520 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN 1579
I + +L + I DT+LVS+M VNNE G IQPI EI E+ + FH DAAQ VGKI ++
Sbjct: 126 IDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVD 185
Query: 1580 IQNYKVDLMSFSAHKIYGPKGIGALYIRRN--PRTRIEAQIHGGGHEYGLRSGTLATHQI 1637
+ ++DL+S S HKIYGPKGIGAL IR+ P+ ++ + GGG E GLR GTL H I
Sbjct: 186 LSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLI 245
Query: 1638 VGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI 1697
VGMGEA +AR + ++ ++ +L + L + +NGD IPH LN S + +
Sbjct: 246 VGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTL--GVKLNGDPAETIPHILNFSIDGV 303
Query: 1698 EGESLLMAIK-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT 1745
E+L++ ++ D AVS+GSAC+S+ EPS+VL+A+G + + A +IRF+
Sbjct: 304 NSEALIVNLRADAAVSTGSACSSSKYEPSHVLQAMGLDTDRARGAIRFS 352
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 397 bits (1021), Expect = e-120
Identities = 205/496 (41%), Positives = 295/496 (59%), Gaps = 19/496 (3%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VA++ P V+ + G PSIV + G VG+ AK + +N
Sbjct: 5 IGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAEN 64
Query: 700 TISSIKRFIAR--DLKNINTNSFPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLKKI 756
T+ SIKRFI R D + PY + + ++++ +P EISA I LK+
Sbjct: 65 TVYSIKRFIGRRWDDTEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQD 124
Query: 757 AENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIF 816
AE + + AVITVPAYF D QRQ TK+A +AGL VLR++NEPT+AA+AY LDK
Sbjct: 125 AEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQ 184
Query: 817 EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK-- 874
E + V+DLGGGTFD+SIL+ +GVF+V + G+++LGGDDFD C+ W+V+N F ++
Sbjct: 185 EQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVEN-FQQQEG 243
Query: 875 --LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-------SDKKIVNITIDMKQFFTIT 925
LS + + ++ K + S + ++ L + K + + + +F +T
Sbjct: 244 IDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELT 303
Query: 926 QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT-TLLTSIDPD 984
+ LV TI +AL DA L +DI+ VILVGGSTR+ + E + FF S++PD
Sbjct: 304 KDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPD 363
Query: 985 KAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGE 1044
+AV GAAIQA L G + LLLDV PLSLGIET+G + KII RNTTIP S S
Sbjct: 364 EAVALGAAIQAGVLGGEV---KDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQV 420
Query: 1045 FTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLS 1104
F+T D QT++ I V+QGE + K+ + L F L IPP P G +I+V++++D +G+L
Sbjct: 421 FSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILK 480
Query: 1105 IFAYEKISGKKKFITI 1120
+ A ++ +G+++ I I
Sbjct: 481 VSAQDQGTGREQSIRI 496
Score = 397 bits (1021), Expect = e-120
Identities = 205/496 (41%), Positives = 295/496 (59%), Gaps = 19/496 (3%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VA++ P V+ + G PSIV + G VG+ AK + +N
Sbjct: 5 IGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAEN 64
Query: 2096 TISSIKRFIAR--DLKNINTNSFPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLKKI 2152
T+ SIKRFI R D + PY + + ++++ +P EISA I LK+
Sbjct: 65 TVYSIKRFIGRRWDDTEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQD 124
Query: 2153 AENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIF 2212
AE + + AVITVPAYF D QRQ TK+A +AGL VLR++NEPT+AA+AY LDK
Sbjct: 125 AEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQ 184
Query: 2213 EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK-- 2270
E + V+DLGGGTFD+SIL+ +GVF+V + G+++LGGDDFD C+ W+V+N F ++
Sbjct: 185 EQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVEN-FQQQEG 243
Query: 2271 --LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-------SDKKIVNITIDMKQFFTIT 2321
LS + + ++ K + S + ++ L + K + + + +F +T
Sbjct: 244 IDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELT 303
Query: 2322 QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT-TLLTSIDPD 2380
+ LV TI +AL DA L +DI+ VILVGGSTR+ + E + FF S++PD
Sbjct: 304 KDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPD 363
Query: 2381 KAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGE 2440
+AV GAAIQA L G + LLLDV PLSLGIET+G + KII RNTTIP S S
Sbjct: 364 EAVALGAAIQAGVLGGEV---KDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQV 420
Query: 2441 FTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLS 2500
F+T D QT++ I V+QGE + K+ + L F L IPP P G +I+V++++D +G+L
Sbjct: 421 FSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILK 480
Query: 2501 IFAYEKISGKKKFITI 2516
+ A ++ +G+++ I I
Sbjct: 481 VSAQDQGTGREQSIRI 496
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 391 bits (1005), Expect = e-119
Identities = 222/518 (42%), Positives = 310/518 (59%), Gaps = 41/518 (7%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GID GTTNS+VA++ P V+ + G+ PSIV Y G + VG+ AK I+P+N
Sbjct: 5 VGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPEN 64
Query: 700 TISSIKRFIARDLKNINTNS--FPYDFQNKFGMLHIKTISGIK----SPIEISAQIFITL 753
T S+KRFI R I+ + Y + +IK SP EISAQ+ L
Sbjct: 65 TFYSVKRFIGRKFSEISEEAKQVSYKVKTD-SNGNIKIECPALNKDFSPEEISAQV---L 120
Query: 754 KKIAENA---VNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 810
+K+ E+A + + AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+A++AY
Sbjct: 121 RKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYG 180
Query: 811 LDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 870
LDK E I V+DLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + +W++K
Sbjct: 181 LDKKNNETIL-VFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKE- 238
Query: 871 FLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSD-----------------KKIVN 913
F KK I + K R+ + L+ +++ K ++LS+ K +
Sbjct: 239 FKKK-----EGIDLSKDRQALQRLT-EAAEKAKIELSNLTQTEINLPFITATQTGPKHIE 292
Query: 914 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 973
T+ +F + L+NR + AL DA L DI+ V+LVGGSTR+ I E V
Sbjct: 293 KTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL 352
Query: 974 KTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFR 1033
S++PD+ V GAA+QA L+G + D LLLDV PLSLG+ET+GG++ KII R
Sbjct: 353 GKKPNQSVNPDEVVAIGAAVQAGVLAGE--VKD-ILLLDVTPLSLGVETLGGVMTKIIPR 409
Query: 1034 NTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKV 1093
NTTIP S F+T DNQT + I V+QGE EL K+ + L F L IPP P G +I+V
Sbjct: 410 NTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEV 469
Query: 1094 TYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
T+ +DA+G+LS+ A +K +GK++ ITI+ + DE+
Sbjct: 470 TFDIDANGILSVTAKDKGTGKEQSITIQGASTLPKDEV 507
Score = 391 bits (1005), Expect = e-119
Identities = 222/518 (42%), Positives = 310/518 (59%), Gaps = 41/518 (7%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GID GTTNS+VA++ P V+ + G+ PSIV Y G + VG+ AK I+P+N
Sbjct: 5 VGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPEN 64
Query: 2096 TISSIKRFIARDLKNINTNS--FPYDFQNKFGMLHIKTISGIK----SPIEISAQIFITL 2149
T S+KRFI R I+ + Y + +IK SP EISAQ+ L
Sbjct: 65 TFYSVKRFIGRKFSEISEEAKQVSYKVKTD-SNGNIKIECPALNKDFSPEEISAQV---L 120
Query: 2150 KKIAENA---VNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 2206
+K+ E+A + + AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+A++AY
Sbjct: 121 RKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYG 180
Query: 2207 LDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 2266
LDK E I V+DLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + +W++K
Sbjct: 181 LDKKNNETIL-VFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKE- 238
Query: 2267 FLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSD-----------------KKIVN 2309
F KK I + K R+ + L+ +++ K ++LS+ K +
Sbjct: 239 FKKK-----EGIDLSKDRQALQRLT-EAAEKAKIELSNLTQTEINLPFITATQTGPKHIE 292
Query: 2310 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 2369
T+ +F + L+NR + AL DA L DI+ V+LVGGSTR+ I E V
Sbjct: 293 KTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL 352
Query: 2370 KTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFR 2429
S++PD+ V GAA+QA L+G + D LLLDV PLSLG+ET+GG++ KII R
Sbjct: 353 GKKPNQSVNPDEVVAIGAAVQAGVLAGE--VKD-ILLLDVTPLSLGVETLGGVMTKIIPR 409
Query: 2430 NTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKV 2489
NTTIP S F+T DNQT + I V+QGE EL K+ + L F L IPP P G +I+V
Sbjct: 410 NTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEV 469
Query: 2490 TYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 2527
T+ +DA+G+LS+ A +K +GK++ ITI+ + DE+
Sbjct: 470 TFDIDANGILSVTAKDKGTGKEQSITIQGASTLPKDEV 507
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 385 bits (990), Expect = e-117
Identities = 211/530 (39%), Positives = 301/530 (56%), Gaps = 61/530 (11%)
Query: 620 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
M +++I EP+ K + +++GIDFGTTNSL+AI N +V+K LIP+ + +
Sbjct: 1 MQIIEIREPEQADFKQERQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFT 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI----------------NTNSFPY 722
+ I + SIKR + LK I N++
Sbjct: 61 SNNFT-----------IGNNKGLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKL 109
Query: 723 DFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQ 782
+F NK + EI+A+IFI LK AE + I AVITVPA+FND R
Sbjct: 110 NFANK-------QLR----IPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARG 158
Query: 783 FTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVF 842
AAK+AG VLRL+ EPT+AA AY L+KN +G + VYDLGGGTFD+SIL + G+F
Sbjct: 159 EVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ-KGCYLVYDLGGGTFDVSILNIQEGIF 217
Query: 843 KVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL 902
+V++ GD+ LGG+D D ++ K + + +++ KE L+Y+ S
Sbjct: 218 QVIATNGDNMLGGNDIDV-----VITQYLCNKFDLPNSIDTLQLAKKAKETLTYKDSFNN 272
Query: 903 NVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRM 962
+ NI+I+ + + LV RTI ++ + L A +I+ VILVGG+TR+
Sbjct: 273 D---------NISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRI 321
Query: 963 KHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA-NFLSGNRGIDDNFLLLDVIPLSLGIE 1021
I + + FK +L+ IDPDKAVV+GAA+QA N ++ + N LL+DV+PLSLG+E
Sbjct: 322 PLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHT----NSLLIDVVPLSLGME 377
Query: 1022 TIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDI 1081
GG+VEKII RNT IP S EFTT+ DNQT I ++QGE E+ +C+ LA FEL+ +
Sbjct: 378 LYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGL 437
Query: 1082 PPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
PPM AG R +VT+ +DADG+LS+ AYEKIS I +KP + ++ EI
Sbjct: 438 PPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEI 487
Score = 385 bits (990), Expect = e-117
Identities = 211/530 (39%), Positives = 301/530 (56%), Gaps = 61/530 (11%)
Query: 2016 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 2074
M +++I EP+ K + +++GIDFGTTNSL+AI N +V+K LIP+ + +
Sbjct: 1 MQIIEIREPEQADFKQERQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFT 60
Query: 2075 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI----------------NTNSFPY 2118
+ I + SIKR + LK I N++
Sbjct: 61 SNNFT-----------IGNNKGLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKL 109
Query: 2119 DFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQ 2178
+F NK + EI+A+IFI LK AE + I AVITVPA+FND R
Sbjct: 110 NFANK-------QLR----IPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARG 158
Query: 2179 FTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVF 2238
AAK+AG VLRL+ EPT+AA AY L+KN +G + VYDLGGGTFD+SIL + G+F
Sbjct: 159 EVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ-KGCYLVYDLGGGTFDVSILNIQEGIF 217
Query: 2239 KVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL 2298
+V++ GD+ LGG+D D ++ K + + +++ KE L+Y+ S
Sbjct: 218 QVIATNGDNMLGGNDIDV-----VITQYLCNKFDLPNSIDTLQLAKKAKETLTYKDSFNN 272
Query: 2299 NVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRM 2358
+ NI+I+ + + LV RTI ++ + L A +I+ VILVGG+TR+
Sbjct: 273 D---------NISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRI 321
Query: 2359 KHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA-NFLSGNRGIDDNFLLLDVIPLSLGIE 2417
I + + FK +L+ IDPDKAVV+GAA+QA N ++ + N LL+DV+PLSLG+E
Sbjct: 322 PLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHT----NSLLIDVVPLSLGME 377
Query: 2418 TIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDI 2477
GG+VEKII RNT IP S EFTT+ DNQT I ++QGE E+ +C+ LA FEL+ +
Sbjct: 378 LYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGL 437
Query: 2478 PPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 2527
PPM AG R +VT+ +DADG+LS+ AYEKIS I +KP + ++ EI
Sbjct: 438 PPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEI 487
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 380 bits (979), Expect = e-115
Identities = 199/520 (38%), Positives = 318/520 (61%), Gaps = 41/520 (7%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GID GTTNS+VA++ P V+ + G PS+V + DG++ VG+ A+ ++P+N
Sbjct: 5 VGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQN 64
Query: 700 TISSIKRFIARDLKNINTNS--FPYDFQ-NKFGMLHIKTISGIK--SPIEISAQIFITLK 754
T ++KRFI R ++ S PY + N+ G + IK + +P E+SA I L+
Sbjct: 65 TFYNLKRFIGRRYDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMI---LR 121
Query: 755 KIAENA---VNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 811
K+A++A + + GAVITVPAYFND QRQ T++A ++AGL V R+LNEPT+AA+AY L
Sbjct: 122 KLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGL 181
Query: 812 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 871
D++ + + V+DLGGGTFD+S+L+ NGVF+V + GD+ LGG+DFD + W+ F
Sbjct: 182 DRSSSQTVL-VFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLA-EQF 239
Query: 872 LKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------------- 914
L+K I + + R+ + L+ +++ K ++LS + +I
Sbjct: 240 LEK-----EGIDLRRDRQALQRLT-EAAEKAKIELSGVSVTDISLPFITATEDGPKHIET 293
Query: 915 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 974
+D KQF ++ L++R + +AL DA L+ +DI+ V+LVGGSTRM + + V
Sbjct: 294 RLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP 353
Query: 975 TTLLTSIDPDKAVVFGAAIQANFLSGN-RGIDDNFLLLDVIPLSLGIETIGGLVEKIIFR 1033
+++PD+ V GAAIQA L+G + + LLLDV PLSLG+ETIGG+++K+I R
Sbjct: 354 REPNQNVNPDEVVAVGAAIQAGILAGELKDL----LLLDVTPLSLGLETIGGVMKKLIPR 409
Query: 1034 NTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKV 1093
NTTIP S F+T ++NQ+++ I V QGE E+ + + L F+L IPP P G +++V
Sbjct: 410 NTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQV 469
Query: 1094 TYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKN 1133
+ +DA+G+L + A ++ +G+++ +TI+ ++ E+
Sbjct: 470 AFDIDANGILQVSATDRTTGREQSVTIQGASTLSEQEVNR 509
Score = 380 bits (979), Expect = e-115
Identities = 199/520 (38%), Positives = 318/520 (61%), Gaps = 41/520 (7%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GID GTTNS+VA++ P V+ + G PS+V + DG++ VG+ A+ ++P+N
Sbjct: 5 VGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQN 64
Query: 2096 TISSIKRFIARDLKNINTNS--FPYDFQ-NKFGMLHIKTISGIK--SPIEISAQIFITLK 2150
T ++KRFI R ++ S PY + N+ G + IK + +P E+SA I L+
Sbjct: 65 TFYNLKRFIGRRYDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMI---LR 121
Query: 2151 KIAENA---VNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 2207
K+A++A + + GAVITVPAYFND QRQ T++A ++AGL V R+LNEPT+AA+AY L
Sbjct: 122 KLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGL 181
Query: 2208 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 2267
D++ + + V+DLGGGTFD+S+L+ NGVF+V + GD+ LGG+DFD + W+ F
Sbjct: 182 DRSSSQTVL-VFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLA-EQF 239
Query: 2268 LKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------------- 2310
L+K I + + R+ + L+ +++ K ++LS + +I
Sbjct: 240 LEK-----EGIDLRRDRQALQRLT-EAAEKAKIELSGVSVTDISLPFITATEDGPKHIET 293
Query: 2311 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 2370
+D KQF ++ L++R + +AL DA L+ +DI+ V+LVGGSTRM + + V
Sbjct: 294 RLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP 353
Query: 2371 TTLLTSIDPDKAVVFGAAIQANFLSGN-RGIDDNFLLLDVIPLSLGIETIGGLVEKIIFR 2429
+++PD+ V GAAIQA L+G + + LLLDV PLSLG+ETIGG+++K+I R
Sbjct: 354 REPNQNVNPDEVVAVGAAIQAGILAGELKDL----LLLDVTPLSLGLETIGGVMKKLIPR 409
Query: 2430 NTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKV 2489
NTTIP S F+T ++NQ+++ I V QGE E+ + + L F+L IPP P G +++V
Sbjct: 410 NTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQV 469
Query: 2490 TYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKN 2529
+ +DA+G+L + A ++ +G+++ +TI+ ++ E+
Sbjct: 470 AFDIDANGILQVSATDRTTGREQSVTIQGASTLSEQEVNR 509
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 376 bits (967), Expect = e-113
Identities = 209/498 (41%), Positives = 302/498 (60%), Gaps = 21/498 (4%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GID GTTNS VAI+ + P+V+++ G PS+V + DG+ VG AK +P+N
Sbjct: 44 VGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPEN 103
Query: 700 TISSIKRFIARDLKNINT----NSFPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLK 754
T+ + KR I R T PY + G I+ SP +I A + +K
Sbjct: 104 TVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMK 163
Query: 755 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
+ AE+ + ++ AVITVPAYFND QRQ TK+A K+AGL+VLR++NEPT+AA+A+ +DKN
Sbjct: 164 ETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN 223
Query: 815 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 874
+ I AVYDLGGGTFDISIL+ GVF+V + G+++LGG+DFD + ++++ F K+
Sbjct: 224 DGKTI-AVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAE-FKKQ 281
Query: 875 --LSYKDVNILMIKSREIKEL----LSYQSSVKLNVKL-----SDKKIVNITIDMKQFFT 923
+ K + + + RE E LS ++ ++N+ S K + I + +
Sbjct: 282 QGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEE 341
Query: 924 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 983
+T L+ +TI K + DA + ++N+VILVGG TRM + E V F ++P
Sbjct: 342 LTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNP 401
Query: 984 DKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSG 1043
D+AV GAAIQA L G I D LLLDV PLSLGIET+GG+ ++I RNTTIP S
Sbjct: 402 DEAVAMGAAIQAGVLKGE--IKD-LLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQ 458
Query: 1044 EFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLL 1103
F+T DNQT + IKV QGE E+ + ++L F+L IPP P G +I+VT+ VDA+G++
Sbjct: 459 VFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIM 518
Query: 1104 SIFAYEKISGKKKFITIK 1121
+I A +K +GKK+ ITI+
Sbjct: 519 NISAVDKSTGKKQEITIQ 536
Score = 376 bits (967), Expect = e-113
Identities = 209/498 (41%), Positives = 302/498 (60%), Gaps = 21/498 (4%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GID GTTNS VAI+ + P+V+++ G PS+V + DG+ VG AK +P+N
Sbjct: 44 VGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPEN 103
Query: 2096 TISSIKRFIARDLKNINT----NSFPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLK 2150
T+ + KR I R T PY + G I+ SP +I A + +K
Sbjct: 104 TVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMK 163
Query: 2151 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
+ AE+ + ++ AVITVPAYFND QRQ TK+A K+AGL+VLR++NEPT+AA+A+ +DKN
Sbjct: 164 ETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN 223
Query: 2211 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 2270
+ I AVYDLGGGTFDISIL+ GVF+V + G+++LGG+DFD + ++++ F K+
Sbjct: 224 DGKTI-AVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAE-FKKQ 281
Query: 2271 --LSYKDVNILMIKSREIKEL----LSYQSSVKLNVKL-----SDKKIVNITIDMKQFFT 2319
+ K + + + RE E LS ++ ++N+ S K + I + +
Sbjct: 282 QGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEE 341
Query: 2320 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 2379
+T L+ +TI K + DA + ++N+VILVGG TRM + E V F ++P
Sbjct: 342 LTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNP 401
Query: 2380 DKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSG 2439
D+AV GAAIQA L G I D LLLDV PLSLGIET+GG+ ++I RNTTIP S
Sbjct: 402 DEAVAMGAAIQAGVLKGE--IKD-LLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQ 458
Query: 2440 EFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLL 2499
F+T DNQT + IKV QGE E+ + ++L F+L IPP P G +I+VT+ VDA+G++
Sbjct: 459 VFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIM 518
Query: 2500 SIFAYEKISGKKKFITIK 2517
+I A +K +GKK+ ITI+
Sbjct: 519 NISAVDKSTGKKQEITIQ 536
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 372 bits (957), Expect = e-112
Identities = 205/514 (39%), Positives = 300/514 (58%), Gaps = 33/514 (6%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GID GTTNS VA + P ++ + G PS+V Y +G VG+ AK ++P+N
Sbjct: 42 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPEN 101
Query: 700 TISSIKRFIARDLKNINTNS--FPYDF---QNKFGMLHIKTISGIKSPIEISAQIFITLK 754
T S+KRFI R + ++ S Y +N L I + EISAQ+ L
Sbjct: 102 TFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLV 161
Query: 755 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
A +N+++ AVITVPAYFND QR TK+A ++AGL VLR++NEPT+A++AY +K
Sbjct: 162 DDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK 221
Query: 815 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 874
E I V+DLGGGTFD+S+L+ +GVF+VLS GD++LGGDDFD + W+ N
Sbjct: 222 SNETIL-VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF---- 276
Query: 875 LSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------------TID 917
KD I ++K ++ + L+ +++ K ++LS +I T+
Sbjct: 277 --KKDEGIDLLKDKQALQRLT-EAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLT 333
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
+F + L++R AL DA L+ KDI+ VILVGGSTR+ + E V
Sbjct: 334 RAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDP 393
Query: 978 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 1037
+++PD+ V GAA+QA L+G + +LLDV PLSLG+ET+GG++ KII RNTT+
Sbjct: 394 NVTVNPDEVVALGAAVQAGVLAGEVS---DIVLLDVTPLSLGLETLGGVMTKIIPRNTTL 450
Query: 1038 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097
P S S F+T D QT++ I V+QGE E V++ + L +F L IPP P G +I+V + +
Sbjct: 451 PTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDI 510
Query: 1098 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
DA+G+LS+ A +K +GKK+ ITI + DE+
Sbjct: 511 DANGILSVSATDKGTGKKQDITITGASTLPKDEV 544
Score = 372 bits (957), Expect = e-112
Identities = 205/514 (39%), Positives = 300/514 (58%), Gaps = 33/514 (6%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GID GTTNS VA + P ++ + G PS+V Y +G VG+ AK ++P+N
Sbjct: 42 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPEN 101
Query: 2096 TISSIKRFIARDLKNINTNS--FPYDF---QNKFGMLHIKTISGIKSPIEISAQIFITLK 2150
T S+KRFI R + ++ S Y +N L I + EISAQ+ L
Sbjct: 102 TFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLV 161
Query: 2151 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
A +N+++ AVITVPAYFND QR TK+A ++AGL VLR++NEPT+A++AY +K
Sbjct: 162 DDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK 221
Query: 2211 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 2270
E I V+DLGGGTFD+S+L+ +GVF+VLS GD++LGGDDFD + W+ N
Sbjct: 222 SNETIL-VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF---- 276
Query: 2271 LSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------------TID 2313
KD I ++K ++ + L+ +++ K ++LS +I T+
Sbjct: 277 --KKDEGIDLLKDKQALQRLT-EAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLT 333
Query: 2314 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 2373
+F + L++R AL DA L+ KDI+ VILVGGSTR+ + E V
Sbjct: 334 RAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDP 393
Query: 2374 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 2433
+++PD+ V GAA+QA L+G + +LLDV PLSLG+ET+GG++ KII RNTT+
Sbjct: 394 NVTVNPDEVVALGAAVQAGVLAGEVS---DIVLLDVTPLSLGLETLGGVMTKIIPRNTTL 450
Query: 2434 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 2493
P S S F+T D QT++ I V+QGE E V++ + L +F L IPP P G +I+V + +
Sbjct: 451 PTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDI 510
Query: 2494 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 2527
DA+G+LS+ A +K +GKK+ ITI + DE+
Sbjct: 511 DANGILSVSATDKGTGKKQDITITGASTLPKDEV 544
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 349 bits (899), Expect = e-108
Identities = 147/368 (39%), Positives = 209/368 (56%), Gaps = 12/368 (3%)
Query: 640 IGIDFGTTNSLVAIVRN-NIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 698
IGID GTTNS VA V N PE++ + G PS+V + DG++ VG+ AK +P+
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 699 NTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIK----SPIEISAQIFITLK 754
NT+ KR I R + S G I + SP E+SA I LK
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSAKKVIGVDRGAPIIPVPVELGGKKYSPEEVSALILKKLK 120
Query: 755 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD-K 813
+ AE + + AVITVPAYFND QR+ TK AA++AGLNV+RL+NEPT+AA+AY LD K
Sbjct: 121 EDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDKK 180
Query: 814 NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 873
+ V+DLGGGTFD+S+++ + GVF+VL+ GGD++LGGDDFD L ++ + K
Sbjct: 181 DEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKFKEK 240
Query: 874 -----KLSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQH 927
+L + + L + + K LS + + L + + + ++F + +
Sbjct: 241 GGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEELIRP 300
Query: 928 LVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV 987
L+ RTI L + L DA L +DI+ V+LVGGS+R+ + E + F L SIDPD+AV
Sbjct: 301 LLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPLRSIDPDEAV 360
Query: 988 VFGAAIQA 995
GAAI A
Sbjct: 361 ALGAAIYA 368
Score = 349 bits (899), Expect = e-108
Identities = 147/368 (39%), Positives = 209/368 (56%), Gaps = 12/368 (3%)
Query: 2036 IGIDFGTTNSLVAIVRN-NIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 2094
IGID GTTNS VA V N PE++ + G PS+V + DG++ VG+ AK +P+
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 2095 NTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIK----SPIEISAQIFITLK 2150
NT+ KR I R + S G I + SP E+SA I LK
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSAKKVIGVDRGAPIIPVPVELGGKKYSPEEVSALILKKLK 120
Query: 2151 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD-K 2209
+ AE + + AVITVPAYFND QR+ TK AA++AGLNV+RL+NEPT+AA+AY LD K
Sbjct: 121 EDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDKK 180
Query: 2210 NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 2269
+ V+DLGGGTFD+S+++ + GVF+VL+ GGD++LGGDDFD L ++ + K
Sbjct: 181 DEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKFKEK 240
Query: 2270 -----KLSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQH 2323
+L + + L + + K LS + + L + + + ++F + +
Sbjct: 241 GGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEELIRP 300
Query: 2324 LVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV 2383
L+ RTI L + L DA L +DI+ V+LVGGS+R+ + E + F L SIDPD+AV
Sbjct: 301 LLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPLRSIDPDEAV 360
Query: 2384 VFGAAIQA 2391
GAAI A
Sbjct: 361 ALGAAIYA 368
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional.
Length = 657
Score = 348 bits (893), Expect = e-103
Identities = 199/517 (38%), Positives = 305/517 (58%), Gaps = 35/517 (6%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IG+D GTT S VA + + VL++ G+ PS+V + K+ VG AK +P++
Sbjct: 30 IGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKL-VGLAAKRQAITNPQS 88
Query: 700 TISSIKRFIAR---------DLKNINTNSFPYDF-QNKFGMLHIKTISGIK-SPIEISAQ 748
T ++KR I R D+KN+ PY + G ++ +G + SP +I A
Sbjct: 89 TFYAVKRLIGRRFEDEHIQKDIKNV-----PYKIVRAGNGDAWVQDGNGKQYSPSQIGAF 143
Query: 749 IFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIA 808
+ +K+ AEN + +++ AV+T PAYFND QRQ TK+A +AGLNV+R++NEPT+AA+A
Sbjct: 144 VLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALA 203
Query: 809 YKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 868
Y +DK + + AVYDLGGGTFDIS+L+ GVF+V + GD++LGG+DFD L +I++
Sbjct: 204 YGMDKTK-DSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILE 262
Query: 869 NAFLKKLSYKDVN---ILMIKSREIKELLSYQSSVKLNVKLSDKKI---------VNITI 916
+K S D++ + + + RE E + S + +++ I + + I
Sbjct: 263 E--FRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHI 320
Query: 917 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 976
+F ITQ L+ R+I + + DA + +K+IN+V+LVGG TRM + E V FF+
Sbjct: 321 SRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKD 380
Query: 977 LLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTT 1036
++PD+AV GAA L RG +LLDV PLSLGIET+GG+ ++I +NTT
Sbjct: 381 PFRGVNPDEAVALGAATLGGVL---RGDVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTT 437
Query: 1037 IPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQ 1096
IP S F+T DNQT + IKV QGE E+ + Q++ F+L IPP P G +I+VT+
Sbjct: 438 IPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFD 497
Query: 1097 VDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKN 1133
+DA+G+ + A +K +GK + ITI ++ ++I+
Sbjct: 498 IDANGICHVTAKDKATGKTQNITITANGGLSKEQIEQ 534
Score = 348 bits (893), Expect = e-103
Identities = 199/517 (38%), Positives = 305/517 (58%), Gaps = 35/517 (6%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IG+D GTT S VA + + VL++ G+ PS+V + K+ VG AK +P++
Sbjct: 30 IGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKL-VGLAAKRQAITNPQS 88
Query: 2096 TISSIKRFIAR---------DLKNINTNSFPYDF-QNKFGMLHIKTISGIK-SPIEISAQ 2144
T ++KR I R D+KN+ PY + G ++ +G + SP +I A
Sbjct: 89 TFYAVKRLIGRRFEDEHIQKDIKNV-----PYKIVRAGNGDAWVQDGNGKQYSPSQIGAF 143
Query: 2145 IFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIA 2204
+ +K+ AEN + +++ AV+T PAYFND QRQ TK+A +AGLNV+R++NEPT+AA+A
Sbjct: 144 VLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALA 203
Query: 2205 YKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 2264
Y +DK + + AVYDLGGGTFDIS+L+ GVF+V + GD++LGG+DFD L +I++
Sbjct: 204 YGMDKTK-DSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILE 262
Query: 2265 NAFLKKLSYKDVN---ILMIKSREIKELLSYQSSVKLNVKLSDKKI---------VNITI 2312
+K S D++ + + + RE E + S + +++ I + + I
Sbjct: 263 E--FRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHI 320
Query: 2313 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 2372
+F ITQ L+ R+I + + DA + +K+IN+V+LVGG TRM + E V FF+
Sbjct: 321 SRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKD 380
Query: 2373 LLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTT 2432
++PD+AV GAA L RG +LLDV PLSLGIET+GG+ ++I +NTT
Sbjct: 381 PFRGVNPDEAVALGAATLGGVL---RGDVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTT 437
Query: 2433 IPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQ 2492
IP S F+T DNQT + IKV QGE E+ + Q++ F+L IPP P G +I+VT+
Sbjct: 438 IPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFD 497
Query: 2493 VDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKN 2529
+DA+G+ + A +K +GK + ITI ++ ++I+
Sbjct: 498 IDANGICHVTAKDKATGKTQNITITANGGLSKEQIEQ 534
>gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon
proteobacteria type. Members of this family are the
NifS-like cysteine desulfurase of the epsilon division
of the Proteobacteria, similar to the NifS protein of
nitrogen-fixing bacteria. Like NifS, and unlike IscS,
this protein is found as part of a system of just two
proteins, a cysteine desulfurase and a scaffold, for
iron-sulfur cluster biosynthesis. This protein is called
NifS by Olsen, et al. (PMID:11123951), so we use this
designation.
Length = 382
Score = 332 bits (852), Expect = e-102
Identities = 166/372 (44%), Positives = 231/372 (62%), Gaps = 9/372 (2%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
+D +ATT +DP+V + M P+ +GNP S H +G AI +A +++ + I A D
Sbjct: 3 LDNNATTMLDPKVKELMDPFFCDIYGNPNSL-HQFGTATHPAIAEALDKLYKGINARDLD 61
Query: 60 EIIWTSGATESNNLAIKGA--AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK 117
+II TS ATESNN +KG K HIIT + EH +V + LE+ G VTYL
Sbjct: 62 DIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLP 121
Query: 118 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV 177
G IT Q+ E I T LVSVM NNE G+I PI EIGE+C+ +GV+FH DA QA+
Sbjct: 122 INEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAI 181
Query: 178 GKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 237
GKI +++Q VD +SFSAHK +GPKG+G LYIR+ + HGG H G RSGTL
Sbjct: 182 GKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKG--VELTPLFHGGEHMGGRRSGTLN 239
Query: 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 297
IV MGEA RLA + E + L+ RL + L+E + ++++ GD +R+P+ + IS
Sbjct: 240 VPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLE-LPDVFVVGDREHRVPNTILIS 298
Query: 298 FNFIEGESLLMAIKD--IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT 355
+EGE++L + IA S+GSAC S LE + V+ A+G + ELAH++IR ++ RFTT
Sbjct: 299 IKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTT 358
Query: 356 EKEIDFTIKLLK 367
E+EID+TI++ K
Sbjct: 359 EEEIDYTIEVFK 370
Score = 330 bits (847), Expect = e-101
Identities = 165/369 (44%), Positives = 229/369 (62%), Gaps = 9/369 (2%)
Query: 1400 DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREII 1458
+ATT +DP+V + M P+ +GNP S H +G AI +A +++ + I A D +II
Sbjct: 6 NATTMLDPKVKELMDPFFCDIYGNPNSL-HQFGTATHPAIAEALDKLYKGINARDLDDII 64
Query: 1459 WTSGATESNNLAIKGA--AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 1516
TS ATESNN +KG K HIIT + EH +V + LE+ G VTYL
Sbjct: 65 ITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINE 124
Query: 1517 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 1576
G IT Q+ E I T LVSVM NNE G+I PI EIGE+C+ +GV+FH DA QA+GKI
Sbjct: 125 QGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKI 184
Query: 1577 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 1636
+++Q VD +SFSAHK +GPKG+G LYIR+ + HGG H G RSGTL
Sbjct: 185 PVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKG--VELTPLFHGGEHMGGRRSGTLNVPY 242
Query: 1637 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 1696
IV MGEA RLA + E + L+ RL + L+E + ++++ GD +R+P+ + IS
Sbjct: 243 IVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLE-LPDVFVVGDREHRVPNTILISIKG 301
Query: 1697 IEGESLLMAIKD--IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 1754
+EGE++L + IA S+GSAC S LE + V+ A+G + ELAH++IR ++ RFTTE+E
Sbjct: 302 VEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEE 361
Query: 1755 IDFTIKLLK 1763
ID+TI++ K
Sbjct: 362 IDYTIEVFK 370
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 341 bits (876), Expect = e-101
Identities = 195/508 (38%), Positives = 294/508 (57%), Gaps = 34/508 (6%)
Query: 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 698
+IGID GTT S V + +N E++ + G PS V + D + +G AK +P+
Sbjct: 6 AIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAF-TDTERLIGDAAKNQVARNPE 64
Query: 699 NTISSIKRFIARDLKNINTNS----FPYDFQNKFG---MLHIKTISGIKS--PIEISAQI 749
NT+ KR I R + S +P+ M+ + K+ P EIS+ +
Sbjct: 65 NTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMV 124
Query: 750 FITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 809
+K+IAE + ++ AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 125 LQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAY 184
Query: 810 KLDK------NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 863
LDK N+ ++DLGGGTFD+S+L ++G+F+V + GD++LGG+DFD L
Sbjct: 185 GLDKKGDGEKNVL-----IFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLV 239
Query: 864 SWIVKNAFLKKLSYKDVNI-------LMIKSREIKELLS--YQSSVKLNVKLSDKKIVNI 914
+ V++ F +K KD++ L + K LS Q++++++ L + N+
Sbjct: 240 EFCVQD-FKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEID-SLFEGIDYNV 297
Query: 915 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 974
TI +F + T+ K L DA + + ++ V+LVGGSTR+ + + +FF
Sbjct: 298 TISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFN 357
Query: 975 -TTLLTSIDPDKAVVFGAAIQANFLSGNR-GIDDNFLLLDVIPLSLGIETIGGLVEKIIF 1032
SI+PD+AV +GAA+QA L+G + + LLLDV PLSLG+ET GG++ K+I
Sbjct: 358 GKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIE 417
Query: 1033 RNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIK 1092
RNTTIP S FTT+ DNQ + I+V +GE + K+ +L F L IPP P G +I+
Sbjct: 418 RNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIE 477
Query: 1093 VTYQVDADGLLSIFAYEKISGKKKFITI 1120
VT+ +DA+G+L++ A +K +GK ITI
Sbjct: 478 VTFDIDANGILNVSAEDKSTGKSNKITI 505
Score = 341 bits (876), Expect = e-101
Identities = 195/508 (38%), Positives = 294/508 (57%), Gaps = 34/508 (6%)
Query: 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 2094
+IGID GTT S V + +N E++ + G PS V + D + +G AK +P+
Sbjct: 6 AIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAF-TDTERLIGDAAKNQVARNPE 64
Query: 2095 NTISSIKRFIARDLKNINTNS----FPYDFQNKFG---MLHIKTISGIKS--PIEISAQI 2145
NT+ KR I R + S +P+ M+ + K+ P EIS+ +
Sbjct: 65 NTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMV 124
Query: 2146 FITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 2205
+K+IAE + ++ AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 125 LQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAY 184
Query: 2206 KLDK------NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 2259
LDK N+ ++DLGGGTFD+S+L ++G+F+V + GD++LGG+DFD L
Sbjct: 185 GLDKKGDGEKNVL-----IFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLV 239
Query: 2260 SWIVKNAFLKKLSYKDVNI-------LMIKSREIKELLS--YQSSVKLNVKLSDKKIVNI 2310
+ V++ F +K KD++ L + K LS Q++++++ L + N+
Sbjct: 240 EFCVQD-FKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEID-SLFEGIDYNV 297
Query: 2311 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 2370
TI +F + T+ K L DA + + ++ V+LVGGSTR+ + + +FF
Sbjct: 298 TISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFN 357
Query: 2371 -TTLLTSIDPDKAVVFGAAIQANFLSGNR-GIDDNFLLLDVIPLSLGIETIGGLVEKIIF 2428
SI+PD+AV +GAA+QA L+G + + LLLDV PLSLG+ET GG++ K+I
Sbjct: 358 GKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIE 417
Query: 2429 RNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIK 2488
RNTTIP S FTT+ DNQ + I+V +GE + K+ +L F L IPP P G +I+
Sbjct: 418 RNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIE 477
Query: 2489 VTYQVDADGLLSIFAYEKISGKKKFITI 2516
VT+ +DA+G+L++ A +K +GK ITI
Sbjct: 478 VTFDIDANGILNVSAEDKSTGKSNKITI 505
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 313 bits (803), Expect = 4e-95
Identities = 157/375 (41%), Positives = 218/375 (58%), Gaps = 19/375 (5%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VA++ P V+ + G PS+V + G+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNPEN 64
Query: 700 TISSIKRFIAR---DLKNINTNSFPY-DFQNKFGMLHIKTISGIKSPIEISAQIFITLKK 755
TI SIKRF+ R +++ + + + I + +P EISA I LK+
Sbjct: 65 TIFSIKRFMGRKFDEVEEERKVPYKVVVDEGGNYKVEIDSNGKDYTPQEISAMILQKLKE 124
Query: 756 IAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI 815
AE + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK
Sbjct: 125 DAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKG 184
Query: 816 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK- 874
E I VYDLGGGTFD+SIL+ +GVF+VL+ GD++LGGDDFD + W+V+ F K+
Sbjct: 185 NEKI-LVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEE-FKKEE 242
Query: 875 ---LSYKDVNILM-IK--SREIKELLSYQSSVKLN-----VKLSDKKIVNITIDMKQFFT 923
L KD L +K + + K LS + ++N + K + +T+ +F
Sbjct: 243 GIDLR-KDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRAKFEE 301
Query: 924 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 983
+T+ LV RTI +AL DA L+ DI+ VILVGGSTR+ + E V F ++P
Sbjct: 302 LTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGKEPNKGVNP 361
Query: 984 DKAVVFGAAIQANFL 998
D+ V GAAIQ L
Sbjct: 362 DEVVAIGAAIQGGVL 376
Score = 313 bits (803), Expect = 4e-95
Identities = 157/375 (41%), Positives = 218/375 (58%), Gaps = 19/375 (5%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VA++ P V+ + G PS+V + G+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNPEN 64
Query: 2096 TISSIKRFIAR---DLKNINTNSFPY-DFQNKFGMLHIKTISGIKSPIEISAQIFITLKK 2151
TI SIKRF+ R +++ + + + I + +P EISA I LK+
Sbjct: 65 TIFSIKRFMGRKFDEVEEERKVPYKVVVDEGGNYKVEIDSNGKDYTPQEISAMILQKLKE 124
Query: 2152 IAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI 2211
AE + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK
Sbjct: 125 DAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKG 184
Query: 2212 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK- 2270
E I VYDLGGGTFD+SIL+ +GVF+VL+ GD++LGGDDFD + W+V+ F K+
Sbjct: 185 NEKI-LVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEE-FKKEE 242
Query: 2271 ---LSYKDVNILM-IK--SREIKELLSYQSSVKLN-----VKLSDKKIVNITIDMKQFFT 2319
L KD L +K + + K LS + ++N + K + +T+ +F
Sbjct: 243 GIDLR-KDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRAKFEE 301
Query: 2320 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 2379
+T+ LV RTI +AL DA L+ DI+ VILVGGSTR+ + E V F ++P
Sbjct: 302 LTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGKEPNKGVNP 361
Query: 2380 DKAVVFGAAIQANFL 2394
D+ V GAAIQ L
Sbjct: 362 DEVVAIGAAIQGGVL 376
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 303 bits (779), Expect = 4e-92
Identities = 121/378 (32%), Positives = 177/378 (46%), Gaps = 32/378 (8%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-E 60
D +ATT V+D + Y GN H G A +A E+AR +VA+ I A E
Sbjct: 4 DSAATTQKPQAVLDALQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPSDEE 63
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPK 119
II+TSG TE+ NL K G I+ + EH + L ++L G V +
Sbjct: 64 IIFTSGTTEAINLVAISLGRSLKP-GDEILVTEMEHHANLVPWQELAKRTGATVRVIPVD 122
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
NGL+ L LE+ + T LV++ V+N G + P+ EIG+L G + DAAQAVG
Sbjct: 123 PNGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVGH 182
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-------HEYG-- 230
I++Q VD ++FS HK+YGP GIG LY RR+ ++ + GGG E
Sbjct: 183 RPIDVQALGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKLPPLLGGGGMIDTVSLQETTFA 242
Query: 231 -----LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYING 284
+GT I+G+G A LA I ++ K L LY L +I I + G
Sbjct: 243 DAPSKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERL-LAIPGIRLYG 301
Query: 285 DMNNRIPHNLNISFNFIEGESL--LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELA 342
R P ++ +F + + L+ + IAV SG C +P V L
Sbjct: 302 PPAERRPSIISFNFPGVHPHDVATLLDERGIAVRSGHHCA----QPLMVRLGL------- 350
Query: 343 HSSIRFTIGRFTTEKEID 360
++R ++ + TE+E+D
Sbjct: 351 GGTLRASLYFYNTEEEVD 368
Score = 301 bits (772), Expect = 4e-91
Identities = 120/375 (32%), Positives = 175/375 (46%), Gaps = 32/375 (8%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIW 1459
ATT V+D + Y GN H G A +A E+AR +VA+ I A EII+
Sbjct: 7 ATTQKPQAVLDALQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPSDEEIIF 66
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPKNNG 1518
TSG TE+ NL K G I+ + EH + L ++L G V + NG
Sbjct: 67 TSGTTEAINLVAISLGRSLKP-GDEILVTEMEHHANLVPWQELAKRTGATVRVIPVDPNG 125
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
L+ L LE+ + T LV++ V+N G + P+ EIG+L G + DAAQAVG I
Sbjct: 126 LLDLDALEKLLTPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVGHRPI 185
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-------HEYG----- 1626
++Q VD ++FS HK+YGP GIG LY RR+ ++ + GGG E
Sbjct: 186 DVQALGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKLPPLLGGGGMIDTVSLQETTFADAP 245
Query: 1627 --LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN 1683
+GT I+G+G A LA I ++ K L LY L +I I + G
Sbjct: 246 SKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERL-LAIPGIRLYGPPA 304
Query: 1684 NRIPHNLNISFNFIEGESL--LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSS 1741
R P ++ +F + + L+ + IAV SG C +P V L +
Sbjct: 305 ERRPSIISFNFPGVHPHDVATLLDERGIAVRSGHHCA----QPLMVRLGL-------GGT 353
Query: 1742 IRFTIGRFTTEKEID 1756
+R ++ + TE+E+D
Sbjct: 354 LRASLYFYNTEEEVD 368
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 300 bits (772), Expect = 1e-91
Identities = 138/359 (38%), Positives = 198/359 (55%), Gaps = 24/359 (6%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNSLVA+ ++ ++ + G +L PS+V DG+I VGK A+ P
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 700 TISSIKRFIARDLK-NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 758
T +S KRF+ D K + F E+S+ + +LK+ AE
Sbjct: 61 TAASFKRFMGTDKKYRLGKREF--------------------RAEELSSLVLRSLKEDAE 100
Query: 759 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 818
+ + AVI+VPAYFND QR+ TK A +LAGL V RL+NEPT+AA+AY L E
Sbjct: 101 AYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDKDEET 160
Query: 819 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK--KLS 876
F V+DLGGGTFD+S+L+ +GV +V + GD+ LGG+DF L +K L KL
Sbjct: 161 KFLVFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRALAEAFLKKHGLDFEKLD 220
Query: 877 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 936
++ L+ + K LS Q +++V++ + + T+ ++F I Q L+ R
Sbjct: 221 PSELARLLRAAERAKRALSDQEEAEMSVRIEG-EELEYTLTREEFEEICQPLLERLRQPI 279
Query: 937 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 995
+AL DA L DI+ +ILVGG+TRM + + VS F L ++PD+ V GAAIQA
Sbjct: 280 ERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLFGRFPLVHLNPDEVVALGAAIQA 338
Score = 300 bits (772), Expect = 1e-91
Identities = 138/359 (38%), Positives = 198/359 (55%), Gaps = 24/359 (6%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNSLVA+ ++ ++ + G +L PS+V DG+I VGK A+ P
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 2096 TISSIKRFIARDLK-NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 2154
T +S KRF+ D K + F E+S+ + +LK+ AE
Sbjct: 61 TAASFKRFMGTDKKYRLGKREF--------------------RAEELSSLVLRSLKEDAE 100
Query: 2155 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 2214
+ + AVI+VPAYFND QR+ TK A +LAGL V RL+NEPT+AA+AY L E
Sbjct: 101 AYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDKDEET 160
Query: 2215 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK--KLS 2272
F V+DLGGGTFD+S+L+ +GV +V + GD+ LGG+DF L +K L KL
Sbjct: 161 KFLVFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRALAEAFLKKHGLDFEKLD 220
Query: 2273 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 2332
++ L+ + K LS Q +++V++ + + T+ ++F I Q L+ R
Sbjct: 221 PSELARLLRAAERAKRALSDQEEAEMSVRIEG-EELEYTLTREEFEEICQPLLERLRQPI 279
Query: 2333 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 2391
+AL DA L DI+ +ILVGG+TRM + + VS F L ++PD+ V GAAIQA
Sbjct: 280 ERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLFGRFPLVHLNPDEVVALGAAIQA 338
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 292 bits (750), Expect = 4e-88
Identities = 156/381 (40%), Positives = 215/381 (56%), Gaps = 30/381 (7%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VA++ P+V+++ G PS+V + DG+ VG AK +P+N
Sbjct: 5 IGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNPEN 64
Query: 700 TISSIKRFIAR---------DLKNINTNSFPYDF-QNKFGMLHIKTISGIKSPIEISAQI 749
T+ + KR I R D+KN+ PY + G ++ SP +I A +
Sbjct: 65 TLYATKRLIGRRFDDPEVQKDIKNV-----PYKIVKASNGDAWVEAHGKKYSPSQIGAFV 119
Query: 750 FITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 809
+ +K+ AE + + AVITVPAYFND QRQ TK+A ++AGLNVLR++NEPT+AA+AY
Sbjct: 120 LMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAY 179
Query: 810 KLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 869
LDK + + AVYDLGGGTFDISIL+ + GVF+V S GD+ LGG+DFD L +VK
Sbjct: 180 GLDKKD-DKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALLRHLVKE 238
Query: 870 AFLKKLSYKDV---NILMIKSREIKEL----LSYQSSVKLNVKL-----SDKKIVNITID 917
KK D+ N+ + + RE E LS +N+ S K +N+ +
Sbjct: 239 --FKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLT 296
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
+F ++ L+ RTI KAL DA ++ DI VILVGG TRM + E V F
Sbjct: 297 RAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGKEP 356
Query: 978 LTSIDPDKAVVFGAAIQANFL 998
++PD+AV GAAIQ L
Sbjct: 357 SKGVNPDEAVAIGAAIQGGVL 377
Score = 292 bits (750), Expect = 4e-88
Identities = 156/381 (40%), Positives = 215/381 (56%), Gaps = 30/381 (7%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VA++ P+V+++ G PS+V + DG+ VG AK +P+N
Sbjct: 5 IGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNPEN 64
Query: 2096 TISSIKRFIAR---------DLKNINTNSFPYDF-QNKFGMLHIKTISGIKSPIEISAQI 2145
T+ + KR I R D+KN+ PY + G ++ SP +I A +
Sbjct: 65 TLYATKRLIGRRFDDPEVQKDIKNV-----PYKIVKASNGDAWVEAHGKKYSPSQIGAFV 119
Query: 2146 FITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 2205
+ +K+ AE + + AVITVPAYFND QRQ TK+A ++AGLNVLR++NEPT+AA+AY
Sbjct: 120 LMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAY 179
Query: 2206 KLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 2265
LDK + + AVYDLGGGTFDISIL+ + GVF+V S GD+ LGG+DFD L +VK
Sbjct: 180 GLDKKD-DKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALLRHLVKE 238
Query: 2266 AFLKKLSYKDV---NILMIKSREIKEL----LSYQSSVKLNVKL-----SDKKIVNITID 2313
KK D+ N+ + + RE E LS +N+ S K +N+ +
Sbjct: 239 --FKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLT 296
Query: 2314 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 2373
+F ++ L+ RTI KAL DA ++ DI VILVGG TRM + E V F
Sbjct: 297 RAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGKEP 356
Query: 2374 LTSIDPDKAVVFGAAIQANFL 2394
++PD+AV GAAIQ L
Sbjct: 357 SKGVNPDEAVAIGAAIQGGVL 377
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 286 bits (733), Expect = 5e-86
Identities = 155/371 (41%), Positives = 209/371 (56%), Gaps = 14/371 (3%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VA++ P ++++ G PSIV + G I VG+ AK + + P+N
Sbjct: 5 IGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKTG-ILVGEAAKRQEALHPEN 63
Query: 700 TISSIKRFIARDLKNINTNSFPYDFQNKF-----GMLHIKTISGIKSPIEISAQIFITLK 754
T + KR I R K++ K G I T SP +I++ + LK
Sbjct: 64 TFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTNGKKYSPSQIASFVLKKLK 123
Query: 755 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
K AE + R+ AVITVPAYFND QRQ TK+A LAGL VLR++NEPT+AA+AY +DK
Sbjct: 124 KTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGIDKR 183
Query: 815 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 874
AVYDLGGGTFDISIL ++GVF+V + GD+ LGG+DFD + +I+K F +K
Sbjct: 184 KENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIVQYIIKE-FKRK 242
Query: 875 ----LSYKDVNILMIK--SREIKELLSYQSSVKLNVKLSDK-KIVNITIDMKQFFTITQH 927
L+ I IK + + K LS + + D K + ITI ++F + +
Sbjct: 243 YKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKHLRITITRREFEQLRKS 302
Query: 928 LVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV 987
+ RTI + L DA L KDI+ VILVGG TRM +I V F S++PD+AV
Sbjct: 303 ICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKKPSKSVNPDEAV 362
Query: 988 VFGAAIQANFL 998
GAAIQ + L
Sbjct: 363 ALGAAIQGSIL 373
Score = 286 bits (733), Expect = 5e-86
Identities = 155/371 (41%), Positives = 209/371 (56%), Gaps = 14/371 (3%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VA++ P ++++ G PSIV + G I VG+ AK + + P+N
Sbjct: 5 IGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKTG-ILVGEAAKRQEALHPEN 63
Query: 2096 TISSIKRFIARDLKNINTNSFPYDFQNKF-----GMLHIKTISGIKSPIEISAQIFITLK 2150
T + KR I R K++ K G I T SP +I++ + LK
Sbjct: 64 TFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTNGKKYSPSQIASFVLKKLK 123
Query: 2151 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
K AE + R+ AVITVPAYFND QRQ TK+A LAGL VLR++NEPT+AA+AY +DK
Sbjct: 124 KTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGIDKR 183
Query: 2211 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 2270
AVYDLGGGTFDISIL ++GVF+V + GD+ LGG+DFD + +I+K F +K
Sbjct: 184 KENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIVQYIIKE-FKRK 242
Query: 2271 ----LSYKDVNILMIK--SREIKELLSYQSSVKLNVKLSDK-KIVNITIDMKQFFTITQH 2323
L+ I IK + + K LS + + D K + ITI ++F + +
Sbjct: 243 YKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKHLRITITRREFEQLRKS 302
Query: 2324 LVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV 2383
+ RTI + L DA L KDI+ VILVGG TRM +I V F S++PD+AV
Sbjct: 303 ICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKKPSKSVNPDEAV 362
Query: 2384 VFGAAIQANFL 2394
GAAIQ + L
Sbjct: 363 ALGAAIQGSIL 373
>gnl|CDD|179511 PRK02948, PRK02948, cysteine desulfurase; Provisional.
Length = 381
Score = 282 bits (723), Expect = 2e-84
Identities = 136/368 (36%), Positives = 193/368 (52%), Gaps = 5/368 (1%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+DY+ATTP+ + FGN S H G TA ++ R A++I + +
Sbjct: 4 LDYAATTPMSKEALQTYQKAASQYFGN-ESSLHDIGGTASSLLQVCRKTFAEMIGGEEQG 62
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
I +TSG TESN LAI+ + + KHIIT EH S+ + LE+ G+ VT +
Sbjct: 63 IYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDK 122
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
+GLI L LE I DT+L S+ N+EIG IQPI EIG L + V+FH D Q GK+
Sbjct: 123 SGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKL 182
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
I++ +D +S SAHKIYGPKG+GA+YI NP+ R + G HE G R GT+
Sbjct: 183 PIDVFEMGIDSLSVSAHKIYGPKGVGAVYI--NPQVRWKPVFPGTTHEKGFRPGTVNVPG 240
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
I A M+EE R L+ + I + G + +PH + ++
Sbjct: 241 IAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKG 300
Query: 301 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
IEG+ ++ + IA+S+GSAC EPS + A+G E A +RF+ G+ TT+ +
Sbjct: 301 IEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQ 360
Query: 359 IDFTIKLL 366
ID TI L
Sbjct: 361 IDTTIHAL 368
Score = 275 bits (706), Expect = 3e-82
Identities = 134/364 (36%), Positives = 189/364 (51%), Gaps = 5/364 (1%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
ATTP+ + FGN S H G TA ++ R A++I + + I +T
Sbjct: 8 ATTPMSKEALQTYQKAASQYFGN-ESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFT 66
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 1520
SG TESN LAI+ + + KHIIT EH S+ + LE+ G+ VT + +GLI
Sbjct: 67 SGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLI 126
Query: 1521 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI 1580
L LE I DT+L S+ N+EIG IQPI EIG L + V+FH D Q GK+ I++
Sbjct: 127 RLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDV 186
Query: 1581 QNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 1640
+D +S SAHKIYGPKG+GA+YI NP+ R + G HE G R GT+ I
Sbjct: 187 FEMGIDSLSVSAHKIYGPKGVGAVYI--NPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAF 244
Query: 1641 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 1700
A M+EE R L+ + I + G + +PH + ++ IEG+
Sbjct: 245 LTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKGIEGQ 304
Query: 1701 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT 1758
++ + IA+S+GSAC EPS + A+G E A +RF+ G+ TT+ +ID T
Sbjct: 305 YTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTT 364
Query: 1759 IKLL 1762
I L
Sbjct: 365 IHAL 368
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 268 bits (686), Expect = 1e-79
Identities = 152/378 (40%), Positives = 218/378 (57%), Gaps = 30/378 (7%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTT S V + +N E++ + G + PS V + DG+ +G AK +P+N
Sbjct: 4 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFT-DGERLIGDAAKNQATSNPEN 62
Query: 700 TISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIKT-ISGIK---SPIEIS 746
TI +KR I R D+K PY NK G +I+ + G K SP EIS
Sbjct: 63 TIFDVKRLIGRKFDDKEVQKDIKL-----LPYKVVNKDGKPYIEVDVKGEKKTFSPEEIS 117
Query: 747 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 806
A + +K+IAE + ++ AV+TVPAYFND QRQ TK+A +AGLNV+R++NEPT+AA
Sbjct: 118 AMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAA 177
Query: 807 IAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 866
IAY LDK E V+DLGGGTFD+S+L NGVF+VL+ GD++LGG+DFD +
Sbjct: 178 IAYGLDKKGGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEHF 237
Query: 867 VKNAFLKKLSYKDV---NILMIK-SREI---KELLSYQSSVKLNVK-LSDKKIVNITIDM 918
+K KK KD+ + K RE+ K LS Q ++ ++ L D + + T+
Sbjct: 238 IK--LFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGEDFSETLTR 295
Query: 919 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 978
+F + L +T+ K L DA+L DI+ ++LVGGSTR+ + + + FF
Sbjct: 296 AKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEP 355
Query: 979 T-SIDPDKAVVFGAAIQA 995
+ I+PD+AV +GAA+QA
Sbjct: 356 SRGINPDEAVAYGAAVQA 373
Score = 268 bits (686), Expect = 1e-79
Identities = 152/378 (40%), Positives = 218/378 (57%), Gaps = 30/378 (7%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTT S V + +N E++ + G + PS V + DG+ +G AK +P+N
Sbjct: 4 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFT-DGERLIGDAAKNQATSNPEN 62
Query: 2096 TISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIKT-ISGIK---SPIEIS 2142
TI +KR I R D+K PY NK G +I+ + G K SP EIS
Sbjct: 63 TIFDVKRLIGRKFDDKEVQKDIKL-----LPYKVVNKDGKPYIEVDVKGEKKTFSPEEIS 117
Query: 2143 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 2202
A + +K+IAE + ++ AV+TVPAYFND QRQ TK+A +AGLNV+R++NEPT+AA
Sbjct: 118 AMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAA 177
Query: 2203 IAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 2262
IAY LDK E V+DLGGGTFD+S+L NGVF+VL+ GD++LGG+DFD +
Sbjct: 178 IAYGLDKKGGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEHF 237
Query: 2263 VKNAFLKKLSYKDV---NILMIK-SREI---KELLSYQSSVKLNVK-LSDKKIVNITIDM 2314
+K KK KD+ + K RE+ K LS Q ++ ++ L D + + T+
Sbjct: 238 IK--LFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGEDFSETLTR 295
Query: 2315 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 2374
+F + L +T+ K L DA+L DI+ ++LVGGSTR+ + + + FF
Sbjct: 296 AKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEP 355
Query: 2375 T-SIDPDKAVVFGAAIQA 2391
+ I+PD+AV +GAA+QA
Sbjct: 356 SRGINPDEAVAYGAAVQA 373
>gnl|CDD|183087 PRK11325, PRK11325, scaffold protein; Provisional.
Length = 127
Score = 224 bits (574), Expect = 3e-68
Identities = 85/97 (87%), Positives = 91/97 (93%)
Query: 373 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKT 432
M+YSEKV+DHYENPRNVG F+KND VGTGMVGAPACGDVMKLQIKVN G+I DAKFKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSFDKNDPNVGTGMVGAPACGDVMKLQIKVNDEGIIEDAKFKT 60
Query: 433 YGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 469
YGCGSAIASSSLVTEWVKGKTLDEA++IKNTDIAEEL
Sbjct: 61 YGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAEEL 97
Score = 224 bits (574), Expect = 3e-68
Identities = 85/97 (87%), Positives = 91/97 (93%)
Query: 1769 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKT 1828
M+YSEKV+DHYENPRNVG F+KND VGTGMVGAPACGDVMKLQIKVN G+I DAKFKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSFDKNDPNVGTGMVGAPACGDVMKLQIKVNDEGIIEDAKFKT 60
Query: 1829 YGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 1865
YGCGSAIASSSLVTEWVKGKTLDEA++IKNTDIAEEL
Sbjct: 61 YGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAEEL 97
>gnl|CDD|234640 PRK00110, PRK00110, hypothetical protein; Validated.
Length = 245
Score = 227 bits (581), Expect = 3e-67
Identities = 90/210 (42%), Positives = 131/210 (62%), Gaps = 12/210 (5%)
Query: 1206 DAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
DAKRGKI T+++RE+ VA G +P+ N +LRLAI+KA AN+PK+NI RAI+K
Sbjct: 18 DAKRGKIFTKLIREITVAAKLGGGDPEGNPRLRLAIDKAKAANMPKDNIERAIKKGTGE- 76
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFK 1324
+ NY E+RYEGY G AIIV+ +T+NR RT + +R+ F+KNGGNL + GSV +MF
Sbjct: 77 -LDGANYEEIRYEGYGPGGVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFD 135
Query: 1325 HCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAE 1384
G ++ P ++ L++ ALE GAED D D +IT+P F ++++LE G +AE
Sbjct: 136 RKGVIVIEPLD-EDELMEAALEAGAEDVETD-DESFEVITAPEDFEAVRDALEAAGLEAE 193
Query: 1385 SSGIVMRPYTNIVFKDATTPIDPRVVDKMI 1414
S+ + M P T +D +K++
Sbjct: 194 SAEVTMIPQN-------TVELDEETAEKLL 216
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 231 bits (590), Expect = 1e-66
Identities = 141/378 (37%), Positives = 209/378 (55%), Gaps = 19/378 (5%)
Query: 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 698
+IGID GTT S V + ++ E++ + G PS V + ++ +G AK ++P
Sbjct: 1 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERL-IGDAAKNQVAMNPT 59
Query: 699 NTISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHI----KTISGIKSPIEISAQIF 750
NT+ KR I R + S +P+ N G I K + P EIS+ +
Sbjct: 60 NTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 751 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 810
+K+IAE + + AVITVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 811 LDKNIF-EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIV-- 867
LDK E ++DLGGGTFD+S+L ++G+F+V + GD++LGG+DFD L + V
Sbjct: 180 LDKKGGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQE 239
Query: 868 -KNAFLKKLS--YKDVNILMIKSREIKELLS--YQSSVKLNVKLSDKKIVNITIDMKQFF 922
K K +S + + L K LS Q+S++++ L + +I +F
Sbjct: 240 FKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEID-SLFEGIDFYTSITRARFE 298
Query: 923 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSI 981
+ L T+ K L DA L I++++LVGGSTR+ + + + +FF L SI
Sbjct: 299 ELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 358
Query: 982 DPDKAVVFGAAIQANFLS 999
+PD+AV +GAA+QA LS
Sbjct: 359 NPDEAVAYGAAVQAAILS 376
Score = 231 bits (590), Expect = 1e-66
Identities = 141/378 (37%), Positives = 209/378 (55%), Gaps = 19/378 (5%)
Query: 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 2094
+IGID GTT S V + ++ E++ + G PS V + ++ +G AK ++P
Sbjct: 1 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERL-IGDAAKNQVAMNPT 59
Query: 2095 NTISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHI----KTISGIKSPIEISAQIF 2146
NT+ KR I R + S +P+ N G I K + P EIS+ +
Sbjct: 60 NTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 2147 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 2206
+K+IAE + + AVITVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 2207 LDKNIF-EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIV-- 2263
LDK E ++DLGGGTFD+S+L ++G+F+V + GD++LGG+DFD L + V
Sbjct: 180 LDKKGGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQE 239
Query: 2264 -KNAFLKKLS--YKDVNILMIKSREIKELLS--YQSSVKLNVKLSDKKIVNITIDMKQFF 2318
K K +S + + L K LS Q+S++++ L + +I +F
Sbjct: 240 FKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEID-SLFEGIDFYTSITRARFE 298
Query: 2319 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSI 2377
+ L T+ K L DA L I++++LVGGSTR+ + + + +FF L SI
Sbjct: 299 ELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 358
Query: 2378 DPDKAVVFGAAIQANFLS 2395
+PD+AV +GAA+QA LS
Sbjct: 359 NPDEAVAYGAAVQAAILS 376
>gnl|CDD|216656 pfam01709, Transcrip_reg, Transcriptional regulator. This is a
family of transcriptional regulators. In mammals, it
activates the transcription of mitochondrially-encoded
COX1. In bacteria, it negatively regulates the
quorum-sensing response regulator by binding to its
promoter region.
Length = 234
Score = 215 bits (549), Expect = 5e-63
Identities = 93/210 (44%), Positives = 132/210 (62%), Gaps = 12/210 (5%)
Query: 1206 DAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
DAKRGKI T++ +E+ VA G +P+ N +LRLAIEKA AN+PK+NI RAI+K +
Sbjct: 14 DAKRGKIFTKLGKEITVAAKMGGPDPEGNPRLRLAIEKAKAANMPKDNIERAIKKGSG-- 71
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFK 1324
+ NY E+RYEGY G AIIV+C+T+NR RT +++R+ F+KNGGNL + GSV +MF
Sbjct: 72 GLDGENYEEIRYEGYGPGGVAIIVECLTDNRNRTAADVRHAFSKNGGNLGETGSVSYMFD 131
Query: 1325 HCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKA 1383
G ++F ++ LL+ ALE GAED ++D I +IT P+ F +K +LE G +
Sbjct: 132 RKGVIVFEKEGVDEDELLEAALEAGAEDV-EEEDGSIEVITDPTDFEAVKKALEEAGLEI 190
Query: 1384 ESSGIVMRPYTNIVFKDATTPIDPRVVDKM 1413
ES+ I M P T +D +K+
Sbjct: 191 ESAEITMIPQN-------TVELDEEDAEKL 213
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the gene
encoding HSPA13 maps to 21q11.1) belongs to the heat
shock protein 70 (HSP70) family of chaperones that assist
in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide sits
in a deep cleft formed between the two lobes of the NBD.
The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free states.
ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 218 bits (558), Expect = 6e-62
Identities = 126/384 (32%), Positives = 199/384 (51%), Gaps = 26/384 (6%)
Query: 640 IGIDFGTTNSLVAIVR--NNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDP 697
IGID GTT S V + + +++ D+ G IPS+V + P + VG KA +P
Sbjct: 23 IGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGT-VLVGYKAVEQAEHNP 81
Query: 698 KNTISSIKRFIARDL------KNINTNSFPYDFQNKFGMLHIK-TISGIK--SPIEISAQ 748
+NTI KRFI + + F ++ G + K +P EI ++
Sbjct: 82 QNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIGSR 141
Query: 749 IFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIA 808
+ + L+K+AE + + AVI+VPA F++ QR T AA LAGL VLR++NEPT+AA+A
Sbjct: 142 LILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAALA 201
Query: 809 YKLDKNIFEGIF--AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 866
Y L K + +F V DLGGGT D+S+L + G+F ++ G++ LGG DF+ L ++
Sbjct: 202 YGLHKK--QDVFNVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYL 259
Query: 867 ---VKNAFLKKLSYK-DVNILMIKSREIKELLSYQSSVKLNVKL----SDKKIV--NITI 916
+ + K K D+ L K L+ S +++ L + IV +
Sbjct: 260 YQKIYEKYGKVPDNKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYEL 319
Query: 917 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 976
+F T+ + L + +L L + +L ++++ ++LVGGSTR+ I + + FF
Sbjct: 320 TRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFFGKD 379
Query: 977 LLTSIDPDKAVVFGAAIQANFLSG 1000
TS+DP+ AVV G AIQA + G
Sbjct: 380 PNTSVDPELAVVTGVAIQAGIIGG 403
Score = 218 bits (558), Expect = 6e-62
Identities = 126/384 (32%), Positives = 199/384 (51%), Gaps = 26/384 (6%)
Query: 2036 IGIDFGTTNSLVAIVR--NNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDP 2093
IGID GTT S V + + +++ D+ G IPS+V + P + VG KA +P
Sbjct: 23 IGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGT-VLVGYKAVEQAEHNP 81
Query: 2094 KNTISSIKRFIARDL------KNINTNSFPYDFQNKFGMLHIK-TISGIK--SPIEISAQ 2144
+NTI KRFI + + F ++ G + K +P EI ++
Sbjct: 82 QNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIGSR 141
Query: 2145 IFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIA 2204
+ + L+K+AE + + AVI+VPA F++ QR T AA LAGL VLR++NEPT+AA+A
Sbjct: 142 LILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAALA 201
Query: 2205 YKLDKNIFEGIF--AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 2262
Y L K + +F V DLGGGT D+S+L + G+F ++ G++ LGG DF+ L ++
Sbjct: 202 YGLHKK--QDVFNVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYL 259
Query: 2263 ---VKNAFLKKLSYK-DVNILMIKSREIKELLSYQSSVKLNVKL----SDKKIV--NITI 2312
+ + K K D+ L K L+ S +++ L + IV +
Sbjct: 260 YQKIYEKYGKVPDNKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYEL 319
Query: 2313 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 2372
+F T+ + L + +L L + +L ++++ ++LVGGSTR+ I + + FF
Sbjct: 320 TRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFFGKD 379
Query: 2373 LLTSIDPDKAVVFGAAIQANFLSG 2396
TS+DP+ AVV G AIQA + G
Sbjct: 380 PNTSVDPELAVVTGVAIQAGIIGG 403
>gnl|CDD|223295 COG0217, COG0217, Uncharacterized conserved protein [Function
unknown].
Length = 241
Score = 203 bits (519), Expect = 5e-59
Identities = 87/199 (43%), Positives = 127/199 (63%), Gaps = 5/199 (2%)
Query: 1206 DAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
DAKR KI T++++E+ VA G +P++N +LR AIEKA AN+PK+NI RAI+K +
Sbjct: 18 DAKRSKIFTKLIKEITVAAKQGGPDPESNPRLRTAIEKAKAANMPKDNIERAIKKASGG- 76
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFK 1324
+ NY E+RYEGY G AIIV+ +T+NR RT SN+R+ FNKNGGNL + GSV +MF
Sbjct: 77 -KDGANYEEIRYEGYGPGGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFD 135
Query: 1325 HCGQLLFLPNTK-KNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKA 1383
G ++ N ++ LL+ A+E GAED + + + I + T P F ++K +LE G++
Sbjct: 136 RKGVIVVEKNEIDEDELLEAAIEAGAED-VEEDEGSIEVYTEPEDFNKVKEALEAAGYEI 194
Query: 1384 ESSGIVMRPYTNIVFKDAT 1402
ES+ + M P + D
Sbjct: 195 ESAELTMIPQNTVELDDED 213
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 202 bits (517), Expect = 1e-56
Identities = 113/392 (28%), Positives = 174/392 (44%), Gaps = 42/392 (10%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR- 59
+D +AT+ V+D + Y R N H A E AR VA+ + AD
Sbjct: 26 LDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSD 85
Query: 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKP 118
EI++T G TE+ NL +G K G I+ EH S + ++L G +V +
Sbjct: 86 EIVFTRGTTEALNLVARGLGR-SLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPL 144
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
++GL+ L LE+ I T LV++ V+N G + P+ EI EL G + DAAQA G
Sbjct: 145 DDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAG 204
Query: 179 KIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH---------- 227
+ I++Q D ++FS HK + GP GIG LY+R+ +E + GGG
Sbjct: 205 HLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGV 264
Query: 228 -----EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIY 281
+GT +G+ A L I M+ L + L GL + +
Sbjct: 265 TLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGL-SELPGVE 323
Query: 282 ING-DMNNRIPHNLNISFNFIEGES-----LLMAIKDIAVSSGSACTSASLEPSYVLRAL 335
I G +R +SFN ++G L+ K IAV +G C + R L
Sbjct: 324 IYGPPDADRGG---IVSFN-VKGIHPHDVATLLDEKGIAVRAGHHCAQP------LHRLL 373
Query: 336 GCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
G ++IR ++ + TE+++D ++ LK
Sbjct: 374 G-----VDATIRASLHLYNTEEDVDRLLEALK 400
Score = 198 bits (506), Expect = 4e-55
Identities = 112/388 (28%), Positives = 171/388 (44%), Gaps = 42/388 (10%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIW 1459
AT+ V+D + Y R N H A E AR VA+ + AD EI++
Sbjct: 30 ATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVF 89
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPKNNG 1518
T G TE+ NL +G K G I+ EH S + ++L G +V + ++G
Sbjct: 90 TRGTTEALNLVARGLGR-SLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDG 148
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
L+ L LE+ I T LV++ V+N G + P+ EI EL G + DAAQA G + I
Sbjct: 149 LLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPI 208
Query: 1579 NIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH-------------- 1623
++Q D ++FS HK + GP GIG LY+R+ +E + GGG
Sbjct: 209 DVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAE 268
Query: 1624 -EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYING- 1680
+GT +G+ A L I M+ L + L GL + + I G
Sbjct: 269 LPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGL-SELPGVEIYGP 327
Query: 1681 DMNNRIPHNLNISFNFIEGES-----LLMAIKDIAVSSGSACTSASLEPSYVLRALGCND 1735
+R +SFN ++G L+ K IAV +G C + R LG
Sbjct: 328 PDADRGG---IVSFN-VKGIHPHDVATLLDEKGIAVRAGHHCAQP------LHRLLG--- 374
Query: 1736 ELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763
++IR ++ + TE+++D ++ LK
Sbjct: 375 --VDATIRASLHLYNTEEDVDRLLEALK 400
>gnl|CDD|188192 TIGR01999, iscU, FeS cluster assembly scaffold IscU. This model
represents IscU, a homolog of the N-terminal region of
NifU, an Fe-S cluster assembly protein found mostly in
nitrogen-fixing bacteria. IscU is considered part of the
IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU
is found in nitrogenase-containing (nitrogen-fixing)
species. A NifU-type protein is also found in
Helicobacter and Campylobacter. IscU and NifU are
considered scaffold proteins on which Fe-S clusters are
assembled before transfer to apoproteins. This model
excludes true NifU proteins as in Klebsiella pneumoniae
and Anabaena sp. as well as archaeal homologs. It
includes largely proteobacterial and eukaryotic forms
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 124
Score = 189 bits (481), Expect = 1e-55
Identities = 73/95 (76%), Positives = 86/95 (90%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
YSEKV+DHYENPRNVG +K+D VGTG+VGAPACGDVMKLQIKVN +G+I DAKFKT+G
Sbjct: 1 YSEKVIDHYENPRNVGSLDKDDKNVGTGLVGAPACGDVMKLQIKVNDDGIIEDAKFKTFG 60
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 469
CGSAIASSSL TE +KGK+L+EA+ IKNT+IA+EL
Sbjct: 61 CGSAIASSSLATELIKGKSLEEALKIKNTEIAKEL 95
Score = 189 bits (481), Expect = 1e-55
Identities = 73/95 (76%), Positives = 86/95 (90%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
YSEKV+DHYENPRNVG +K+D VGTG+VGAPACGDVMKLQIKVN +G+I DAKFKT+G
Sbjct: 1 YSEKVIDHYENPRNVGSLDKDDKNVGTGLVGAPACGDVMKLQIKVNDDGIIEDAKFKTFG 60
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 1865
CGSAIASSSL TE +KGK+L+EA+ IKNT+IA+EL
Sbjct: 61 CGSAIASSSLATELIKGKSLEEALKIKNTEIAKEL 95
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 195 bits (497), Expect = 3e-54
Identities = 130/391 (33%), Positives = 201/391 (51%), Gaps = 43/391 (10%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GIDFG NS+VA+ R +V+ ++Y PS+V + + +G+ AK + KN
Sbjct: 3 VGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEKQR-LIGEAAKNQAISNFKN 61
Query: 700 TISSIKRFIARDLKN----INTNSFPYDFQ---NKFGMLHIKTISGIK--SPIEISAQIF 750
T+ + KR I R + P+ + + + + K SP ++ A +
Sbjct: 62 TVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAMLL 121
Query: 751 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 810
LK+IAE A+ ++ VI+VP+YF D QR+ +AA++AGLN LRL+NE T+ A+AY
Sbjct: 122 TKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAY- 180
Query: 811 LDKNIFEGIF-------------AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857
GI+ A D+G + +SI+ F G KVLS D NLGG D
Sbjct: 181 -------GIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRD 233
Query: 858 FDYCLFSWIVKNAFLKKLSYK-DVNI-------LMIKSREIKELLSYQSSVKLNVK-LSD 908
FD LF K F +K YK DV L+ ++K++LS + LN++ L +
Sbjct: 234 FDEALFEHFAKE-FKEK--YKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLME 290
Query: 909 KKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEG 968
K V+ I ++F + L+ R KAL +A LT +DI++V +VGGSTR+ + E
Sbjct: 291 DKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKEL 350
Query: 969 VSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 999
++ F L T+++ D+AV G A+Q LS
Sbjct: 351 IAKVFGKELSTTLNADEAVARGCALQCAMLS 381
Score = 195 bits (497), Expect = 3e-54
Identities = 130/391 (33%), Positives = 201/391 (51%), Gaps = 43/391 (10%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GIDFG NS+VA+ R +V+ ++Y PS+V + + +G+ AK + KN
Sbjct: 3 VGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEKQR-LIGEAAKNQAISNFKN 61
Query: 2096 TISSIKRFIARDLKN----INTNSFPYDFQ---NKFGMLHIKTISGIK--SPIEISAQIF 2146
T+ + KR I R + P+ + + + + K SP ++ A +
Sbjct: 62 TVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAMLL 121
Query: 2147 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 2206
LK+IAE A+ ++ VI+VP+YF D QR+ +AA++AGLN LRL+NE T+ A+AY
Sbjct: 122 TKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAY- 180
Query: 2207 LDKNIFEGIF-------------AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 2253
GI+ A D+G + +SI+ F G KVLS D NLGG D
Sbjct: 181 -------GIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRD 233
Query: 2254 FDYCLFSWIVKNAFLKKLSYK-DVNI-------LMIKSREIKELLSYQSSVKLNVK-LSD 2304
FD LF K F +K YK DV L+ ++K++LS + LN++ L +
Sbjct: 234 FDEALFEHFAKE-FKEK--YKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLME 290
Query: 2305 KKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEG 2364
K V+ I ++F + L+ R KAL +A LT +DI++V +VGGSTR+ + E
Sbjct: 291 DKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKEL 350
Query: 2365 VSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 2395
++ F L T+++ D+AV G A+Q LS
Sbjct: 351 IAKVFGKELSTTLNADEAVARGCALQCAMLS 381
>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family
belongs to the pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to cysteine
desulfurase (SufS) and selenocysteine lyase. SufS
catalyzes the removal of elemental sulfur and selenium
atoms from L-cysteine, L-cystine, L-selenocysteine, and
L-selenocystine to produce L-alanine; and selenocysteine
lyase catalyzes the decomposition of L-selenocysteine.
Length = 373
Score = 193 bits (494), Expect = 8e-54
Identities = 112/387 (28%), Positives = 171/387 (44%), Gaps = 39/387 (10%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPRE 60
D +AT+ V+D ++ Y R N H A A E AR +VA+ I A P E
Sbjct: 4 DNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDE 63
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPK 119
II+T TE+ NL G K G I+T EH S + ++L G ++ +
Sbjct: 64 IIFTRNTTEAINLVAYGLG-RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD 122
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
++G + L LE+ + T LV+V V+N +G I P+ EIGE+ GV D AQ+ G
Sbjct: 123 DDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGH 182
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH--------EYGL 231
+ +++Q+ D ++FS HK+ GP GIG LY + + GGG E
Sbjct: 183 MPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMP-PYGGGGEMIEEVSFEETTY 241
Query: 232 R-------SGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYIN 283
+GT +G+G A L +I M+ L L I + +
Sbjct: 242 ADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERL-SEIPGVRVY 300
Query: 284 GDMNNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCND 339
GD +R +SFN I + + IAV +G C +P ++R LG
Sbjct: 301 GDAEDRAG---VVSFNLEGIHPHDVATILDQYGIAVRAGHHCA----QP--LMRRLG--- 348
Query: 340 ELAHSSIRFTIGRFTTEKEIDFTIKLL 366
++R + G + TE+EID ++ L
Sbjct: 349 --VPGTVRASFGLYNTEEEIDALVEAL 373
Score = 193 bits (493), Expect = 1e-53
Identities = 111/384 (28%), Positives = 169/384 (44%), Gaps = 39/384 (10%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIW 1459
AT+ V+D ++ Y R N H A A E AR +VA+ I A P EII+
Sbjct: 7 ATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIF 66
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPKNNG 1518
T TE+ NL G K G I+T EH S + ++L G ++ + ++G
Sbjct: 67 TRNTTEAINLVAYGLG-RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDG 125
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
+ L LE+ + T LV+V V+N +G I P+ EIGE+ GV D AQ+ G + +
Sbjct: 126 QLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPV 185
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH--------EYGLR-- 1628
++Q+ D ++FS HK+ GP GIG LY + + GGG E
Sbjct: 186 DVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMP-PYGGGGEMIEEVSFEETTYADL 244
Query: 1629 -----SGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM 1682
+GT +G+G A L +I M+ L L I + + GD
Sbjct: 245 PHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERL-SEIPGVRVYGDA 303
Query: 1683 NNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELA 1738
+R +SFN I + + IAV +G C +P ++R LG
Sbjct: 304 EDRAG---VVSFNLEGIHPHDVATILDQYGIAVRAGHHCA----QP--LMRRLG-----V 349
Query: 1739 HSSIRFTIGRFTTEKEIDFTIKLL 1762
++R + G + TE+EID ++ L
Sbjct: 350 PGTVRASFGLYNTEEEIDALVEAL 373
>gnl|CDD|233240 TIGR01033, TIGR01033, DNA-binding regulatory protein, YebC/PmpR
family. This model describes a minimally characterized
protein family, restricted to bacteria excepting for some
eukaryotic sequences that have possible transit peptides.
YebC from E. coli is crystallized, and PA0964 from
Pseudomonas aeruginosa has been shown to be a
sequence-specific DNA-binding regulatory protein
[Regulatory functions, DNA interactions].
Length = 238
Score = 182 bits (463), Expect = 1e-51
Identities = 84/193 (43%), Positives = 125/193 (64%), Gaps = 5/193 (2%)
Query: 1206 DAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
DAKRGKI T++++E+ VA G +P++N +LR AIEKA AN+PK+NI RAI+K
Sbjct: 18 DAKRGKIFTKLIKEIIVAAKLGGGDPESNPRLRTAIEKAKAANMPKDNIERAIKKGAG-- 75
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFK 1324
+ + NY E+ YEGY+ G AIIV+C+T+N+ RT S +R+ FNKNGG+L + GSV ++F
Sbjct: 76 ELDGSNYEEITYEGYAPGGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFS 135
Query: 1325 HCGQLLFLPNTKK-NTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKA 1383
G + N L++ A+E GAED + D++ + T+P + ++K +LE GF
Sbjct: 136 RKGVIEVPKNEVDEEDLMEAAIEAGAED-IDVDDDEFEVYTAPEELEKVKEALEAKGFPI 194
Query: 1384 ESSGIVMRPYTNI 1396
ES+ I M P T +
Sbjct: 195 ESAEITMIPLTTV 207
>gnl|CDD|237084 PRK12378, PRK12378, hypothetical protein; Provisional.
Length = 235
Score = 173 bits (441), Expect = 2e-48
Identities = 76/205 (37%), Positives = 116/205 (56%), Gaps = 6/205 (2%)
Query: 1194 AWGLEENSRLSFDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKNN 1252
AW + + D + KI ++ +E+ VA G +P++N LR IE+A AN+PK+
Sbjct: 4 AWENIKAKKAKKDGAKSKIFAKLGKEIYVAAKQGGPDPESNPALRFVIERAKKANVPKDV 63
Query: 1253 IFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGN 1312
I RAI+K +Y EVRYEG+ NG +IV+C+T+N RTV+N+R+ FNKNGGN
Sbjct: 64 IERAIKKAKGG---GGEDYEEVRYEGFGPNGVMVIVECLTDNVNRTVANVRSAFNKNGGN 120
Query: 1313 LSKEGSVLFMFKHCGQLLFLPNTKKNTLLDL-ALEKGAEDFLIDKDNKITIITSPSKFIE 1371
L GSV FMF H G +F + + L L + ED + +++ IT+ T P+ F +
Sbjct: 121 LGTSGSVAFMFDHKGVFVFEGDDEDELLEALIDADVDVED-VEEEEGTITVYTDPTDFHK 179
Query: 1372 IKNSLEMTGFKAESSGIVMRPYTNI 1396
+K +LE G + + + M P +
Sbjct: 180 VKKALEAAGIEFLVAELEMIPQNPV 204
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 176 bits (447), Expect = 1e-47
Identities = 112/375 (29%), Positives = 193/375 (51%), Gaps = 20/375 (5%)
Query: 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 698
+IG+ FG T++ +A+ ++ +V+ + G + P++V + I VG AK + +
Sbjct: 2 AIGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTEVI-VGLAAKQGRIRNAA 60
Query: 699 NTISSIKRFIAR----DLKNINTNSFPYDFQNKFGMLHIKTISGIK----SPIEISAQIF 750
NTI K+ + R K K G + + K SP E++ IF
Sbjct: 61 NTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIF 120
Query: 751 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 810
+K+IA++A+ + VITVP YF++ Q+ + AA+ AG NVLR+++EP++AA+AY
Sbjct: 121 KKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYG 180
Query: 811 LDKNIFEG--IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 868
+ ++ G VY LGG + D++IL+ +G+++VL+ D NLGG+ F S +
Sbjct: 181 IGQDSPTGKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFT-ETLSQYLA 239
Query: 869 NAFLKKL------SYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQF 921
N F +K + + + L + K++LS S V+ L + ++ +F
Sbjct: 240 NEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARF 299
Query: 922 FTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT-LLTS 980
++ L + + K L ANLT DIN V+L GGS+R+ + + + + F + +L S
Sbjct: 300 ESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNS 359
Query: 981 IDPDKAVVFGAAIQA 995
I PD+ + GAA QA
Sbjct: 360 ISPDEVIAIGAAKQA 374
Score = 176 bits (447), Expect = 1e-47
Identities = 112/375 (29%), Positives = 193/375 (51%), Gaps = 20/375 (5%)
Query: 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 2094
+IG+ FG T++ +A+ ++ +V+ + G + P++V + I VG AK + +
Sbjct: 2 AIGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTEVI-VGLAAKQGRIRNAA 60
Query: 2095 NTISSIKRFIAR----DLKNINTNSFPYDFQNKFGMLHIKTISGIK----SPIEISAQIF 2146
NTI K+ + R K K G + + K SP E++ IF
Sbjct: 61 NTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIF 120
Query: 2147 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 2206
+K+IA++A+ + VITVP YF++ Q+ + AA+ AG NVLR+++EP++AA+AY
Sbjct: 121 KKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYG 180
Query: 2207 LDKNIFEG--IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 2264
+ ++ G VY LGG + D++IL+ +G+++VL+ D NLGG+ F S +
Sbjct: 181 IGQDSPTGKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFT-ETLSQYLA 239
Query: 2265 NAFLKKL------SYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQF 2317
N F +K + + + L + K++LS S V+ L + ++ +F
Sbjct: 240 NEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARF 299
Query: 2318 FTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT-LLTS 2376
++ L + + K L ANLT DIN V+L GGS+R+ + + + + F + +L S
Sbjct: 300 ESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNS 359
Query: 2377 IDPDKAVVFGAAIQA 2391
I PD+ + GAA QA
Sbjct: 360 ISPDEVIAIGAAKQA 374
>gnl|CDD|216592 pfam01592, NifU_N, NifU-like N terminal domain. This domain is
found in NifU in combination with pfam01106. This domain
is found on isolated in several bacterial species. The
nif genes are responsible for nitrogen fixation. However
this domain is found in bacteria that do not fix
nitrogen, so it may have a broader significance in the
cell than nitrogen fixation. These proteins appear to be
scaffold proteins for iron-sulfur clusters.
Length = 126
Score = 165 bits (419), Expect = 4e-47
Identities = 67/97 (69%), Positives = 77/97 (79%), Gaps = 4/97 (4%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVN-KNGVITDAKFKTY 433
YS+KVLDH++NPRNVGV E+ D G VG+PACGD M+LQIKV+ I DAKFKT+
Sbjct: 2 YSDKVLDHFKNPRNVGVLEEAD---AVGDVGSPACGDAMRLQIKVDEDTDRIEDAKFKTF 58
Query: 434 GCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV 470
GCGSAIASSS +TE VKGKTLDEA+ I NTDIAEEL
Sbjct: 59 GCGSAIASSSALTELVKGKTLDEALKITNTDIAEELG 95
Score = 165 bits (419), Expect = 4e-47
Identities = 67/97 (69%), Positives = 77/97 (79%), Gaps = 4/97 (4%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVN-KNGVITDAKFKTY 1829
YS+KVLDH++NPRNVGV E+ D G VG+PACGD M+LQIKV+ I DAKFKT+
Sbjct: 2 YSDKVLDHFKNPRNVGVLEEAD---AVGDVGSPACGDAMRLQIKVDEDTDRIEDAKFKTF 58
Query: 1830 GCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV 1866
GCGSAIASSS +TE VKGKTLDEA+ I NTDIAEEL
Sbjct: 59 GCGSAIASSSALTELVKGKTLDEALKITNTDIAEELG 95
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown [Unknown function, Enzymes of
unknown specificity].
Length = 376
Score = 171 bits (435), Expect = 4e-46
Identities = 120/404 (29%), Positives = 186/404 (46%), Gaps = 71/404 (17%)
Query: 2 DYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
D +ATT P V + M + + G+P + A + +E+ R +A+L A
Sbjct: 4 DNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSA 63
Query: 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKP 118
+++T+ AT + N+A+KG K G H+IT EH SV + L+ G +T +K
Sbjct: 64 HVVFTNNATTALNIALKGLL----KEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKC 119
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
N GLI+ +++ I ++T L+ V +N G I PI EIGEL + G+ F DAAQ G
Sbjct: 120 DNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAG 179
Query: 179 KIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYG------- 230
I I++ +D+++F+ HK + GP+G G LYIR +++ GG +
Sbjct: 180 VIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREG--IKLKPLKSGGTGSHSALIDQPS 237
Query: 231 -----LRSGTLATHQIVGMGEA------FRLARIEMKEELKRILFLQKRLYNGLMESIEE 279
SGTL T I G+ +A I KE + L ++L NGL E I +
Sbjct: 238 ELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECM-----LTEKLLNGLRE-INK 291
Query: 280 IYINGDMN--NRIPHNLNISFNFIEGES------LLMAIKDIAVSSGSACTSASLEPSYV 331
+ I G + NR+ +SF +EG +L DIA +G C
Sbjct: 292 VKIYGPADPANRVG---VVSFT-VEGIDSEEVADILDEKFDIATRTGLHCAP-------- 339
Query: 332 LRALGCNDELAHSS--------IRFTIGRFTTEKEIDFTIKLLK 367
LAH + IR ++G F TE+EI+ ++ L
Sbjct: 340 ---------LAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALS 374
Score = 169 bits (429), Expect = 3e-45
Identities = 120/407 (29%), Positives = 186/407 (45%), Gaps = 72/407 (17%)
Query: 1396 IVFKDATT--PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA- 1452
I F +A T P V + M + + G+P + A + +E+ R +A+L A
Sbjct: 1 IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAP 60
Query: 1453 DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTY 1511
+++T+ AT + N+A+KG K G H+IT EH SV + L+ G +T
Sbjct: 61 SSAHVVFTNNATTALNIALKGLL----KEGDHVITTPMEHNSVARPLECLKEQIGVEITI 116
Query: 1512 LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 1571
+K N GLI+ +++ I ++T L+ V +N G I PI EIGEL + G+ F DAAQ
Sbjct: 117 VKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQ 176
Query: 1572 AVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYG---- 1626
G I I++ +D+++F+ HK + GP+G G LYIR +++ GG +
Sbjct: 177 TAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREG--IKLKPLKSGGTGSHSALID 234
Query: 1627 --------LRSGTLATHQIVGMGEA------FRLARIEMKEELKRILFLQKRLYNGLMES 1672
SGTL T I G+ +A I KE + L ++L NGL E
Sbjct: 235 QPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECM-----LTEKLLNGLRE- 288
Query: 1673 IEEIYINGDMN--NRIPHNLNISFNFIEGES------LLMAIKDIAVSSGSACTSASLEP 1724
I ++ I G + NR+ +SF +EG +L DIA +G C
Sbjct: 289 INKVKIYGPADPANRVG---VVSFT-VEGIDSEEVADILDEKFDIATRTGLHCAP----- 339
Query: 1725 SYVLRALGCNDELAHSS--------IRFTIGRFTTEKEIDFTIKLLK 1763
LAH + IR ++G F TE+EI+ ++ L
Sbjct: 340 ------------LAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALS 374
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 161 bits (409), Expect = 2e-42
Identities = 110/389 (28%), Positives = 175/389 (44%), Gaps = 35/389 (8%)
Query: 640 IGIDFGTTNSLVAIVRNNIP-EVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 698
+GID G+ VA+V+ +P E++ ++ PS V + +++ G A P+
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLF-GSDASSLAARFPQ 59
Query: 699 NTISSIKRFIARDLKNIN----TNSFPYDF---QNKFGMLHIKTISGIK-SPIEISAQIF 750
+K + + + + + P + G + K G + S E+ A I
Sbjct: 60 QVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMIL 119
Query: 751 ITLKKIAENAVNNR-IFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 809
KK+AE + VITVP YF QRQ +AA+LAGLNVL L+N+ T+AA+ Y
Sbjct: 120 NYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNY 179
Query: 810 KLDKNIFEG---IFAVYDLGGGTFDISILKFKN----------GVFKVLSVGGDSNLGGD 856
LD+ YD+G G+ ++++F +VL VG D LGG
Sbjct: 180 ALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGR 239
Query: 857 DFDYCLFSWIVKNAFLKKLSYKDVNI--------LMIKSREIKELLSYQSSVKLNVK-LS 907
+FD L + F +K K L+ ++ KE+LS S ++++ L
Sbjct: 240 EFDLRLAD-HLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLY 298
Query: 908 DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHE 967
D I +F + L R + KAL A LT+KDI++V L+GG+TR+ + E
Sbjct: 299 DDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQE 358
Query: 968 GVSNFFKT-TLLTSIDPDKAVVFGAAIQA 995
+S L ++ D+A GAA A
Sbjct: 359 ELSEAVGKKKLGKHLNADEAAAMGAAYYA 387
Score = 161 bits (409), Expect = 2e-42
Identities = 110/389 (28%), Positives = 175/389 (44%), Gaps = 35/389 (8%)
Query: 2036 IGIDFGTTNSLVAIVRNNIP-EVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 2094
+GID G+ VA+V+ +P E++ ++ PS V + +++ G A P+
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLF-GSDASSLAARFPQ 59
Query: 2095 NTISSIKRFIARDLKNIN----TNSFPYDF---QNKFGMLHIKTISGIK-SPIEISAQIF 2146
+K + + + + + P + G + K G + S E+ A I
Sbjct: 60 QVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMIL 119
Query: 2147 ITLKKIAENAVNNR-IFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 2205
KK+AE + VITVP YF QRQ +AA+LAGLNVL L+N+ T+AA+ Y
Sbjct: 120 NYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNY 179
Query: 2206 KLDKNIFEG---IFAVYDLGGGTFDISILKFKN----------GVFKVLSVGGDSNLGGD 2252
LD+ YD+G G+ ++++F +VL VG D LGG
Sbjct: 180 ALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGR 239
Query: 2253 DFDYCLFSWIVKNAFLKKLSYKDVNI--------LMIKSREIKELLSYQSSVKLNVK-LS 2303
+FD L + F +K K L+ ++ KE+LS S ++++ L
Sbjct: 240 EFDLRLAD-HLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLY 298
Query: 2304 DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHE 2363
D I +F + L R + KAL A LT+KDI++V L+GG+TR+ + E
Sbjct: 299 DDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQE 358
Query: 2364 GVSNFFKT-TLLTSIDPDKAVVFGAAIQA 2391
+S L ++ D+A GAA A
Sbjct: 359 ELSEAVGKKKLGKHLNADEAAAMGAAYYA 387
>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily. This model
represents a subfamily of NifS-related cysteine
desulfurases involved in FeS cluster formation needed
for nitrogen fixation among other vital functions. Many
cysteine desulfurases are also active as selenocysteine
lyase and/or cysteine sulfinate desulfinase. This
subfamily is associated with the six-gene SUF system
described in E. coli and Erwinia as an FeS cluster
formation system during oxidative stress. The active
site Cys is this subfamily resembles GHHC with one or
both His conserved [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 403
Score = 156 bits (397), Expect = 9e-41
Identities = 109/393 (27%), Positives = 172/393 (43%), Gaps = 38/393 (9%)
Query: 4 SATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREI 61
SA T P+ V+D + Y R N H A +A E R +VA+ I A EI
Sbjct: 24 SAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEI 83
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKN 120
++T G TES NL K G I+ + EH + + + L E G + ++ +
Sbjct: 84 VFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDD 143
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
+G + L LE+ + T LV++ V+N +G + P+ EI +L G D AQAV +
Sbjct: 144 DGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHM 203
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG------HE------ 228
+++Q D FS HK+YGP GIG LY + ++ + GG E
Sbjct: 204 PVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNE 263
Query: 229 --YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGD 285
+ +GT ++G+G A L I ++ L L E I + I G
Sbjct: 264 APHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGE-IPGLRIYGP 322
Query: 286 MNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDE 340
+ + ISFN +EG ++ + IAV SG C +P ++R G
Sbjct: 323 RDAEDRGGI-ISFN-VEGVHPHDVGTILDEEGIAVRSGHHCA----QP--LMRRFG---- 370
Query: 341 LAHSSIRFTIGRFTTEKEID-FTIKLLKMKEFF 372
++ R + + TE++ID L K+++FF
Sbjct: 371 -VPATCRASFYIYNTEEDIDALVEALKKVRKFF 402
Score = 155 bits (393), Expect = 3e-40
Identities = 110/398 (27%), Positives = 175/398 (43%), Gaps = 39/398 (9%)
Query: 1396 IVFKD-ATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA- 1452
+V+ D A T P+ V+D + Y R N H A +A E R +VA+ I A
Sbjct: 19 LVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAA 78
Query: 1453 DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTY 1511
EI++T G TES NL K G I+ + EH + + + L E G + +
Sbjct: 79 SDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKF 138
Query: 1512 LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 1571
+ ++G + L LE+ + T LV++ V+N +G + P+ EI +L G D AQ
Sbjct: 139 IPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQ 198
Query: 1572 AVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG------HE- 1624
AV + +++Q D FS HK+YGP GIG LY + ++ + GG E
Sbjct: 199 AVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEE 258
Query: 1625 -------YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEI 1676
+ +GT ++G+G A L I ++ L L E I +
Sbjct: 259 TTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGE-IPGL 317
Query: 1677 YINGDMNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASLEPSYVLRAL 1731
I G + + ISFN +EG ++ + IAV SG C +P ++R
Sbjct: 318 RIYGPRDAEDRGGI-ISFN-VEGVHPHDVGTILDEEGIAVRSGHHCA----QP--LMRRF 369
Query: 1732 GCNDELAHSSIRFTIGRFTTEKEID-FTIKLLKMKEFF 1768
G ++ R + + TE++ID L K+++FF
Sbjct: 370 G-----VPATCRASFYIYNTEEDIDALVEALKKVRKFF 402
>gnl|CDD|223892 COG0822, IscU, NifU homolog involved in Fe-S cluster formation
[Energy production and conversion].
Length = 150
Score = 142 bits (361), Expect = 5e-39
Identities = 64/99 (64%), Positives = 77/99 (77%), Gaps = 5/99 (5%)
Query: 373 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKT 432
YSEK+LDHY+NPRNVGV + D VG G VGAPACGDV+ L +KV+ NGVI DAKFK
Sbjct: 5 DLYSEKILDHYKNPRNVGVLDDAD--VGVGHVGAPACGDVITLYLKVD-NGVIEDAKFKG 61
Query: 433 YGCGSAIASSSLVTEWVKGKTLDEAMSIK--NTDIAEEL 469
+GC +IASSS++TE VKGKTLDEA+ I TD+A+EL
Sbjct: 62 FGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAKEL 100
Score = 142 bits (361), Expect = 5e-39
Identities = 64/99 (64%), Positives = 77/99 (77%), Gaps = 5/99 (5%)
Query: 1769 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKT 1828
YSEK+LDHY+NPRNVGV + D VG G VGAPACGDV+ L +KV+ NGVI DAKFK
Sbjct: 5 DLYSEKILDHYKNPRNVGVLDDAD--VGVGHVGAPACGDVITLYLKVD-NGVIEDAKFKG 61
Query: 1829 YGCGSAIASSSLVTEWVKGKTLDEAMSIK--NTDIAEEL 1865
+GC +IASSS++TE VKGKTLDEA+ I TD+A+EL
Sbjct: 62 FGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAKEL 100
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 150 bits (379), Expect = 1e-38
Identities = 106/382 (27%), Positives = 185/382 (48%), Gaps = 23/382 (6%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+G D G + +A+ R E + +++ PS++ + + +G AK Q N
Sbjct: 3 VGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRT-IGVAAKNQQITHANN 61
Query: 700 TISSIKRFIARDLKN----INTNSFPYDF-QNKFGMLHIKTI----SGIKSPIEISAQIF 750
T+S+ KRF R + + YD K G + +K + + S +I+A +
Sbjct: 62 TVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAMLL 121
Query: 751 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 810
LK+ AEN + + VI+VP++F D +R+ +AA++ GLN LRL+N+ T+ A+ Y
Sbjct: 122 TKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYG 181
Query: 811 LDKNIFEG------IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL-- 862
+ K I D+G F +S F G KVL D LGG +FD L
Sbjct: 182 IYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVE 241
Query: 863 -FSWIVKNAFLKKLSYKDVNILMI--KSREIKELLSYQSS-VKLNVK-LSDKKIVNITID 917
F K + K +L + + ++K+L+S S+ + LN++ + K V+ ++
Sbjct: 242 HFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMN 301
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
QF + L+ R + L +L ++D++ V +VGG+TR+ + E ++ FF +
Sbjct: 302 RSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFFGKDV 361
Query: 978 LTSIDPDKAVVFGAAIQANFLS 999
T+++ D+AV G A+Q LS
Sbjct: 362 STTLNADEAVARGCALQCAILS 383
Score = 150 bits (379), Expect = 1e-38
Identities = 106/382 (27%), Positives = 185/382 (48%), Gaps = 23/382 (6%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+G D G + +A+ R E + +++ PS++ + + +G AK Q N
Sbjct: 3 VGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRT-IGVAAKNQQITHANN 61
Query: 2096 TISSIKRFIARDLKN----INTNSFPYDF-QNKFGMLHIKTI----SGIKSPIEISAQIF 2146
T+S+ KRF R + + YD K G + +K + + S +I+A +
Sbjct: 62 TVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAMLL 121
Query: 2147 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 2206
LK+ AEN + + VI+VP++F D +R+ +AA++ GLN LRL+N+ T+ A+ Y
Sbjct: 122 TKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYG 181
Query: 2207 LDKNIFEG------IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL-- 2258
+ K I D+G F +S F G KVL D LGG +FD L
Sbjct: 182 IYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVE 241
Query: 2259 -FSWIVKNAFLKKLSYKDVNILMI--KSREIKELLSYQSS-VKLNVK-LSDKKIVNITID 2313
F K + K +L + + ++K+L+S S+ + LN++ + K V+ ++
Sbjct: 242 HFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMN 301
Query: 2314 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 2373
QF + L+ R + L +L ++D++ V +VGG+TR+ + E ++ FF +
Sbjct: 302 RSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFFGKDV 361
Query: 2374 LTSIDPDKAVVFGAAIQANFLS 2395
T+++ D+AV G A+Q LS
Sbjct: 362 STTLNADEAVARGCALQCAILS 383
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 148 bits (376), Expect = 4e-38
Identities = 105/390 (26%), Positives = 180/390 (46%), Gaps = 39/390 (10%)
Query: 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI-DP 697
IGI+FG T S +A + +V+ ++ G IPS + Y + Y G +AK Q I +
Sbjct: 2 VIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYH-GEQEYHGNQAK-AQLIRNA 59
Query: 698 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIK----------SPIEISA 747
KNTI++ + + + I+ ++ ++ + K + E++
Sbjct: 60 KNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTV 119
Query: 748 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 807
+ LK+ AE+ + ++ GAV++VP +F+D Q + AA+ AGL VL+L+ EP +A +
Sbjct: 120 RFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALL 179
Query: 808 AYKLDKN----IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 863
AY + + V D GG D+S++ + G++ +L+ D LGGD D L
Sbjct: 180 AYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDALV 239
Query: 864 SWIVKNAFLKKLSYKDVNI---------LMIKSREIKELLSYQSSVKLNVK-LSDKKIVN 913
K F KK K + L +S K+ LS +S +V+ L++ +
Sbjct: 240 KHFAKE-FTKK--TK-TDPRTNARALAKLRAESEITKKTLSASTSATCSVESLAEGIDFH 295
Query: 914 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 973
+I+ +F + + + + A+ A L DI+ V+LVGG+ + +S F
Sbjct: 296 SSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLF 355
Query: 974 --KTTLLTSI------DPDKAVVFGAAIQA 995
TT+ I DP + V G AIQA
Sbjct: 356 PETTTITAPITVSKALDPSELVARGCAIQA 385
Score = 148 bits (376), Expect = 4e-38
Identities = 105/390 (26%), Positives = 180/390 (46%), Gaps = 39/390 (10%)
Query: 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI-DP 2093
IGI+FG T S +A + +V+ ++ G IPS + Y + Y G +AK Q I +
Sbjct: 2 VIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYH-GEQEYHGNQAK-AQLIRNA 59
Query: 2094 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIK----------SPIEISA 2143
KNTI++ + + + I+ ++ ++ + K + E++
Sbjct: 60 KNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTV 119
Query: 2144 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 2203
+ LK+ AE+ + ++ GAV++VP +F+D Q + AA+ AGL VL+L+ EP +A +
Sbjct: 120 RFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALL 179
Query: 2204 AYKLDKN----IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 2259
AY + + V D GG D+S++ + G++ +L+ D LGGD D L
Sbjct: 180 AYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDALV 239
Query: 2260 SWIVKNAFLKKLSYKDVNI---------LMIKSREIKELLSYQSSVKLNVK-LSDKKIVN 2309
K F KK K + L +S K+ LS +S +V+ L++ +
Sbjct: 240 KHFAKE-FTKK--TK-TDPRTNARALAKLRAESEITKKTLSASTSATCSVESLAEGIDFH 295
Query: 2310 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 2369
+I+ +F + + + + A+ A L DI+ V+LVGG+ + +S F
Sbjct: 296 SSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLF 355
Query: 2370 --KTTLLTSI------DPDKAVVFGAAIQA 2391
TT+ I DP + V G AIQA
Sbjct: 356 PETTTITAPITVSKALDPSELVARGCAIQA 385
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 147 bits (373), Expect = 5e-38
Identities = 96/377 (25%), Positives = 185/377 (49%), Gaps = 22/377 (5%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
G+D G NS++A+ RN +++ ++ PS+V + P + Y+G+ K Q + KN
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNR-YLGETGKNKQTSNIKN 59
Query: 700 TISSIKRFIARDLKNIN--------TNSFPYDFQNKFGMLHIKTISGIK-SPIEISAQIF 750
T++++KR I D + + T+ K G S +++A
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 751 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 810
+K + I I VP ++ + QR +AA++AGLN +R++N+ T+A ++Y
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 811 LDK-NIFEG-----IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFS 864
+ K ++ EG I A D+G ++ SI+ FK G KVL D + GG DFD +
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLAITE 239
Query: 865 WIV-----KNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDM 918
K + + K N ++ + ++K++LS ++ +V+ + + V+ +
Sbjct: 240 HFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSR 299
Query: 919 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 978
++ + + L+ R +KAL A L+ ++++ V ++GG+TR+ + + +S F L
Sbjct: 300 EELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLS 359
Query: 979 TSIDPDKAVVFGAAIQA 995
T+++ D+A+ GAA
Sbjct: 360 TTLNQDEAIAKGAAFIC 376
Score = 147 bits (373), Expect = 5e-38
Identities = 96/377 (25%), Positives = 185/377 (49%), Gaps = 22/377 (5%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
G+D G NS++A+ RN +++ ++ PS+V + P + Y+G+ K Q + KN
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNR-YLGETGKNKQTSNIKN 59
Query: 2096 TISSIKRFIARDLKNIN--------TNSFPYDFQNKFGMLHIKTISGIK-SPIEISAQIF 2146
T++++KR I D + + T+ K G S +++A
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 2147 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 2206
+K + I I VP ++ + QR +AA++AGLN +R++N+ T+A ++Y
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 2207 LDK-NIFEG-----IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFS 2260
+ K ++ EG I A D+G ++ SI+ FK G KVL D + GG DFD +
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLAITE 239
Query: 2261 WIV-----KNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDM 2314
K + + K N ++ + ++K++LS ++ +V+ + + V+ +
Sbjct: 240 HFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSR 299
Query: 2315 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 2374
++ + + L+ R +KAL A L+ ++++ V ++GG+TR+ + + +S F L
Sbjct: 300 EELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLS 359
Query: 2375 TSIDPDKAVVFGAAIQA 2391
T+++ D+A+ GAA
Sbjct: 360 TTLNQDEAIAKGAAFIC 376
>gnl|CDD|143480 cd06664, IscU_like, Iron-sulfur cluster scaffold-like proteins.
IscU_like and NifU_like proteins. IscU and NifU function
as a scaffold for the assembly of [2Fe-2S] clusters
before they are transferred to apo target proteins. They
are highly conserved and play vital roles in the ISC and
NIF systems of Fe-S protein maturation. NIF genes
participate in nitrogen fixation in several isolated
bacterial species. The NifU domain, however, is also
found in bacteria that do not fix nitrogen, so it may
have wider significance in the cell. Human IscU
interacts with frataxin, the Friedreich ataxia gene
product, and incorrectly spliced IscU has been shown to
disrupt iron homeostasis in skeletal muscle and cause
myopathy.
Length = 123
Score = 136 bits (345), Expect = 4e-37
Identities = 55/94 (58%), Positives = 67/94 (71%), Gaps = 4/94 (4%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
YSE +LDHY NPRNVG E D GTG VG P CGD + L +KV +G ITDAKF+ +G
Sbjct: 2 YSEIILDHYRNPRNVGRLEDAD---GTGEVGNPLCGDEITLYLKVE-DGRITDAKFQGFG 57
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEE 468
C +IAS+SL+TE +KGKTLDEA+ + N DIA
Sbjct: 58 CAISIASASLLTELIKGKTLDEALKLLNKDIAML 91
Score = 136 bits (345), Expect = 4e-37
Identities = 55/94 (58%), Positives = 67/94 (71%), Gaps = 4/94 (4%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
YSE +LDHY NPRNVG E D GTG VG P CGD + L +KV +G ITDAKF+ +G
Sbjct: 2 YSEIILDHYRNPRNVGRLEDAD---GTGEVGNPLCGDEITLYLKVE-DGRITDAKFQGFG 57
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEE 1864
C +IAS+SL+TE +KGKTLDEA+ + N DIA
Sbjct: 58 CAISIASASLLTELIKGKTLDEALKLLNKDIAML 91
>gnl|CDD|132460 TIGR03419, NifU_clost, FeS cluster assembly scaffold protein NifU,
Clostridium type. NifU and NifS form a pair of
iron-sulfur (FeS) cluster biosynthesis proteins much
simpler than the ISC and SUF systems. Members of this
protein family are a distinct group of NifU-like
proteins, found always to a NifS-like protein and
restricted to species that lack a SUF system. Typically,
NIF systems service a smaller number of FeS-containing
proteins than do ISC or SUF. Members of this particular
branch typically are found, almost half the time, near
the mnmA gene, involved in the carboxymethylaminomethyl
modification of U34 in some tRNAs (see GenProp0704).
While other NifU proteins are associated with nitrogen
fixation, this family is not [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 121
Score = 133 bits (337), Expect = 3e-36
Identities = 61/125 (48%), Positives = 77/125 (61%), Gaps = 17/125 (13%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
YSEKV+DH+ NPRNVG E D G G VG P CGD+MK+ +KV ++ +I D KFKT+G
Sbjct: 1 YSEKVMDHFMNPRNVGEIENAD---GVGEVGNPKCGDIMKIFLKV-EDDIIKDVKFKTFG 56
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELVTKKAAKY-------------INKY 481
CG+AIASSS+ TE +KGKTL+EA + N +AE L K IN Y
Sbjct: 57 CGAAIASSSMATEMIKGKTLEEAWELTNKAVAEALDGLPPVKMHCSVLAEEAIHKAINDY 116
Query: 482 IQKRG 486
+K G
Sbjct: 117 REKNG 121
Score = 133 bits (337), Expect = 3e-36
Identities = 61/125 (48%), Positives = 77/125 (61%), Gaps = 17/125 (13%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
YSEKV+DH+ NPRNVG E D G G VG P CGD+MK+ +KV ++ +I D KFKT+G
Sbjct: 1 YSEKVMDHFMNPRNVGEIENAD---GVGEVGNPKCGDIMKIFLKV-EDDIIKDVKFKTFG 56
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELVTKKAAKY-------------INKY 1877
CG+AIASSS+ TE +KGKTL+EA + N +AE L K IN Y
Sbjct: 57 CGAAIASSSMATEMIKGKTLEEAWELTNKAVAEALDGLPPVKMHCSVLAEEAIHKAINDY 116
Query: 1878 IQKRG 1882
+K G
Sbjct: 117 REKNG 121
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 141 bits (357), Expect = 7e-36
Identities = 114/389 (29%), Positives = 187/389 (48%), Gaps = 37/389 (9%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GID G + VA+ R E + ++Y P+ + + P + +G AK + KN
Sbjct: 3 VGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNR-SIGAAAKSQVISNAKN 61
Query: 700 TISSIKRFIARDLKN----INTNSFPYDF-QNKFGMLHIKTI----SGIKSPIEISAQIF 750
T+ KRF R + S YD Q G IK + + +++A +
Sbjct: 62 TVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAMLL 121
Query: 751 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 810
LK+ AE+A+ + V++VP ++ D +R+ +A ++AGLN LRL+NE T+ A+AY
Sbjct: 122 TKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYG 181
Query: 811 LDKNIFEG------IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFS 864
+ K D+G + +S+ F G KVL+ D+ LGG FD L +
Sbjct: 182 IYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLVN 241
Query: 865 WIVKNAFLKKLSYKDVNILMIKSR------------EIKELLSYQSS-VKLNVKLSDKKI 911
+ + F KK YK L IKS+ ++K+L+S +S + LN++ I
Sbjct: 242 YFCEE-FGKK--YK----LDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDI 294
Query: 912 -VNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVS 970
V+ T++ +F + L+ R L A L +DI V +VGG+TR+ + E +S
Sbjct: 295 DVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKIS 354
Query: 971 NFFKTTLLTSIDPDKAVVFGAAIQANFLS 999
FF + T+++ D+AV G A+Q LS
Sbjct: 355 KFFGKEVSTTLNADEAVARGCALQCAILS 383
Score = 141 bits (357), Expect = 7e-36
Identities = 114/389 (29%), Positives = 187/389 (48%), Gaps = 37/389 (9%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GID G + VA+ R E + ++Y P+ + + P + +G AK + KN
Sbjct: 3 VGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNR-SIGAAAKSQVISNAKN 61
Query: 2096 TISSIKRFIARDLKN----INTNSFPYDF-QNKFGMLHIKTI----SGIKSPIEISAQIF 2146
T+ KRF R + S YD Q G IK + + +++A +
Sbjct: 62 TVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAMLL 121
Query: 2147 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 2206
LK+ AE+A+ + V++VP ++ D +R+ +A ++AGLN LRL+NE T+ A+AY
Sbjct: 122 TKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYG 181
Query: 2207 LDKNIFEG------IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFS 2260
+ K D+G + +S+ F G KVL+ D+ LGG FD L +
Sbjct: 182 IYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLVN 241
Query: 2261 WIVKNAFLKKLSYKDVNILMIKSR------------EIKELLSYQSS-VKLNVKLSDKKI 2307
+ + F KK YK L IKS+ ++K+L+S +S + LN++ I
Sbjct: 242 YFCEE-FGKK--YK----LDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDI 294
Query: 2308 -VNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVS 2366
V+ T++ +F + L+ R L A L +DI V +VGG+TR+ + E +S
Sbjct: 295 DVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKIS 354
Query: 2367 NFFKTTLLTSIDPDKAVVFGAAIQANFLS 2395
FF + T+++ D+AV G A+Q LS
Sbjct: 355 KFFGKEVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|131062 TIGR02007, fdx_isc, ferredoxin, 2Fe-2S type, ISC system. This family
consists of proteobacterial ferredoxins associated with
and essential to the ISC system of 2Fe-2S cluster
assembly. This family is closely related to (but
excludes) eukaryotic (mitochondrial) adrenodoxins, which
are ferredoxins involved in electron transfer to P450
cytochromes [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 110
Score = 125 bits (316), Expect = 2e-33
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 2530 GAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNK 2589
GA+ G ++ D L N I IEHACEKSCAC TCH I+REGF+ + +A+E EEDML+K
Sbjct: 15 GAVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDK 74
Query: 2590 AWGLEENSRLSCQ 2602
AWGLE +SRLSCQ
Sbjct: 75 AWGLEPDSRLSCQ 87
Score = 119 bits (300), Expect = 2e-31
Identities = 44/79 (55%), Positives = 54/79 (68%)
Query: 1134 GAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNK 1193
GA+ G ++ D L N I IEHACEKSCAC TCH I+REGF+ + +A+E EEDML+K
Sbjct: 15 GAVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDK 74
Query: 1194 AWGLEENSRLSFDAKRGKI 1212
AWGLE +SRLS A
Sbjct: 75 AWGLEPDSRLSCQAVVADE 93
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 132 bits (333), Expect = 1e-32
Identities = 104/385 (27%), Positives = 188/385 (48%), Gaps = 29/385 (7%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GID G N +A+ R+ E + ++Y P+ + L +G AK + +N
Sbjct: 3 VGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACIS-LGSRTRAIGNAAKSQIVTNVRN 61
Query: 700 TISSIKRFIARDLKN--INTN--SFPYDFQN--------KFGMLHIKTISGIKSPIEISA 747
TI K+ R + + T PY+ Q K L + I+ +++
Sbjct: 62 TIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIE---QVTG 118
Query: 748 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 807
+ LK+ +ENA+ + VI++P++F D +R+ AA++AGLN LRL+NE T+ A+
Sbjct: 119 MLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVAL 178
Query: 808 AYKLDKNIFEGI------FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYC 861
AY + K + D+G + +S+ F G KVL+ D LGG +FD
Sbjct: 179 AYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEA 238
Query: 862 LFSWIVKNAFLK-KLSYKDVNILMIK----SREIKELLSYQSS-VKLNVK-LSDKKIVNI 914
L + K K++ K+ + +++ ++K+L+S +S + LN++ + V+
Sbjct: 239 LVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSS 298
Query: 915 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 974
++ QF + L+ R + ANL +DI ++ +VGG+TR+ + E +++FF
Sbjct: 299 KMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSFFL 358
Query: 975 TTLLTSIDPDKAVVFGAAIQANFLS 999
+ T+++ D+AV G A+Q LS
Sbjct: 359 KDISTTLNADEAVARGCALQCAILS 383
Score = 132 bits (333), Expect = 1e-32
Identities = 104/385 (27%), Positives = 188/385 (48%), Gaps = 29/385 (7%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GID G N +A+ R+ E + ++Y P+ + L +G AK + +N
Sbjct: 3 VGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACIS-LGSRTRAIGNAAKSQIVTNVRN 61
Query: 2096 TISSIKRFIARDLKN--INTN--SFPYDFQN--------KFGMLHIKTISGIKSPIEISA 2143
TI K+ R + + T PY+ Q K L + I+ +++
Sbjct: 62 TIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIE---QVTG 118
Query: 2144 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 2203
+ LK+ +ENA+ + VI++P++F D +R+ AA++AGLN LRL+NE T+ A+
Sbjct: 119 MLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVAL 178
Query: 2204 AYKLDKNIFEGI------FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYC 2257
AY + K + D+G + +S+ F G KVL+ D LGG +FD
Sbjct: 179 AYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEA 238
Query: 2258 LFSWIVKNAFLK-KLSYKDVNILMIK----SREIKELLSYQSS-VKLNVK-LSDKKIVNI 2310
L + K K++ K+ + +++ ++K+L+S +S + LN++ + V+
Sbjct: 239 LVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSS 298
Query: 2311 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 2370
++ QF + L+ R + ANL +DI ++ +VGG+TR+ + E +++FF
Sbjct: 299 KMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSFFL 358
Query: 2371 TTLLTSIDPDKAVVFGAAIQANFLS 2395
+ T+++ D+AV G A+Q LS
Sbjct: 359 KDISTTLNADEAVARGCALQCAILS 383
>gnl|CDD|233679 TIGR02000, NifU_proper, Fe-S cluster assembly protein NifU. Three
different but partially homologous Fe-S cluster assembly
systems have been described: Isc, Suf, and Nif. The
latter is associated with donation of an Fe-S cluster to
nitrogenase in a number of nitrogen-fixing species.
NifU, described here, consists of an N-terminal domain
(pfam01592) and a C-terminal domain (pfam01106).
Homologs with an equivalent domain archictecture from
Helicobacter and Campylobacter, however, are excluded
from this model by a high trusted cutoff. The model,
therefore, is specific for NifU involved in nitrogenase
maturation. The related model TIGR01999 homologous to
the N-terminus of this model describes IscU from the Isc
system as in E. coli, Saccharomyces cerevisiae, and Homo
sapiens [Biosynthesis of cofactors, prosthetic groups,
and carriers, Other, Central intermediary metabolism,
Nitrogen fixation].
Length = 290
Score = 119 bits (300), Expect = 3e-29
Identities = 48/96 (50%), Positives = 69/96 (71%), Gaps = 4/96 (4%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVN-KNGVITDAKFKTY 433
Y++KV +H+ NP+N GV E + G VG+ +CGD ++L +KV+ ++ I DA F+T+
Sbjct: 4 YTDKVKEHFYNPKNAGVVEDANAV---GEVGSISCGDALRLMLKVDPESDKIVDAGFQTF 60
Query: 434 GCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 469
GCGSAIASSS +TE +KG TLDEA+ + N DIA+ L
Sbjct: 61 GCGSAIASSSALTEMIKGLTLDEALKVSNQDIADYL 96
Score = 119 bits (300), Expect = 3e-29
Identities = 48/96 (50%), Positives = 69/96 (71%), Gaps = 4/96 (4%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVN-KNGVITDAKFKTY 1829
Y++KV +H+ NP+N GV E + G VG+ +CGD ++L +KV+ ++ I DA F+T+
Sbjct: 4 YTDKVKEHFYNPKNAGVVEDANAV---GEVGSISCGDALRLMLKVDPESDKIVDAGFQTF 60
Query: 1830 GCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 1865
GCGSAIASSS +TE +KG TLDEA+ + N DIA+ L
Sbjct: 61 GCGSAIASSSALTEMIKGLTLDEALKVSNQDIADYL 96
>gnl|CDD|223706 COG0633, Fdx, Ferredoxin [Energy production and conversion].
Length = 102
Score = 90.2 bits (224), Expect = 3e-21
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 2526 EIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEED 2585
+ + N G +L +A +N I IE+AC AC TC V + EGF+E++ E EED
Sbjct: 10 DGEGDVTEAVNEGETLLEAAERNGIPIEYACRGG-ACGTCRVKVLEGFDEVSPPEESEED 68
Query: 2586 MLNKAWGLEENSRLSCQ 2602
+L A GLE NSRLSCQ
Sbjct: 69 LL-DAAGLEGNSRLSCQ 84
Score = 82.9 bits (205), Expect = 1e-18
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 1130 EIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEED 1189
+ + N G +L +A +N I IE+AC AC TC V + EGF+E++ E EED
Sbjct: 10 DGEGDVTEAVNEGETLLEAAERNGIPIEYACRGG-ACGTCRVKVLEGFDEVSPPEESEED 68
Query: 1190 MLNKAWGLEENSRLS 1204
+L A GLE NSRLS
Sbjct: 69 LL-DAAGLEGNSRLS 82
>gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit
CsdA. Members of this protein family are CsdS. This
protein, found Escherichia coli, Yersinia pestis,
Photorhabdus luminescens, and related species, and
related to SufS, works together with and physically
interacts with CsdE (a paralog of SufE). CsdA has
cysteine desulfurase activity that is enhanced by CsdE,
a sulfur acceptor protein. This gene pair, although
involved in FeS cluster biosynthesis, is not found next
to other such genes as are its paralogs from the Suf or
Isc systems [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 398
Score = 98.0 bits (244), Expect = 4e-21
Identities = 64/211 (30%), Positives = 96/211 (45%), Gaps = 7/211 (3%)
Query: 4 SATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREI 61
SA T + P+ V+D + R+ G H + E AR +VA+ + A D I
Sbjct: 22 SAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENI 81
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVTYLKP 118
+WT G TES NL + A + G II + EH + L I L + G +V L
Sbjct: 82 VWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANL--IPWLMVAQQTGAKVVKLPI 139
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ L + QL E + T ++++ ++N G + L G + D AQ V
Sbjct: 140 GADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVV 199
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALY 209
++Q +D +FS HK+YGP GIG LY
Sbjct: 200 HGPPDVQALDIDFYAFSGHKLYGPTGIGVLY 230
Score = 96.4 bits (240), Expect = 2e-20
Identities = 65/215 (30%), Positives = 98/215 (45%), Gaps = 8/215 (3%)
Query: 1397 VFKD-ATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-D 1453
V+ D A T + P+ V+D + R+ G H + E AR +VA+ + A D
Sbjct: 18 VYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPD 77
Query: 1454 PREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVT 1510
I+WT G TES NL + A + G II + EH + L I L + G +V
Sbjct: 78 AENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANL--IPWLMVAQQTGAKVV 135
Query: 1511 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 1570
L + L + QL E + T ++++ ++N G + L G + D A
Sbjct: 136 KLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGA 195
Query: 1571 QAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALY 1605
Q V ++Q +D +FS HK+YGP GIG LY
Sbjct: 196 QGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLY 230
>gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional.
Length = 401
Score = 97.0 bits (242), Expect = 1e-20
Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 7/211 (3%)
Query: 4 SATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREI 61
SA T + P+ V++ + + GN E AR +VAQL+ A D + I
Sbjct: 25 SAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNI 84
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVTYLKP 118
+WT G TES NL + A + G II + EH + L + L + G +V L
Sbjct: 85 VWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANL--VPWLMVAQQTGAKVVKLPL 142
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ L + L E I T ++++ ++N G + L G++ D AQ
Sbjct: 143 GADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAV 202
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALY 209
++Q +D +FS HK+YGP GIG LY
Sbjct: 203 HFPADVQALDIDFYAFSGHKLYGPTGIGVLY 233
Score = 96.6 bits (241), Expect = 1e-20
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 1440 EKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS 1498
E AR +VAQL+ A D + I+WT G TES NL + A + G II + EH + L
Sbjct: 66 EAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANL-- 123
Query: 1499 IRKL---ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 1555
+ L + G +V L + L + L E I T ++++ ++N G +
Sbjct: 124 VPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAI 183
Query: 1556 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALY 1605
L G++ D AQ ++Q +D +FS HK+YGP GIG LY
Sbjct: 184 TLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLY 233
>gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine
desulfurase.
Length = 424
Score = 95.2 bits (237), Expect = 4e-20
Identities = 105/393 (26%), Positives = 172/393 (43%), Gaps = 41/393 (10%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
+D +AT+ V+D + Y N H A A E AR +VA I A R
Sbjct: 36 LDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSR 95
Query: 60 EIIWTSGATESNNLAIK--GAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYL 116
EI++T ATE+ NL G A+ K G +I EH S + + + + G + ++
Sbjct: 96 EIVFTRNATEAINLVAYTWGLANL--KPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFV 153
Query: 117 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
+ ++ + QL+E + T LV+ V+N +G I P+ +I + G DA Q+
Sbjct: 154 GLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQS 213
Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGG---------GH 227
V + +++Q D + S+HK+ GP GIG L+ + + + + GG
Sbjct: 214 VPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHS 273
Query: 228 EYG-----LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIY 281
Y +GT A + +G+G A L+ I M + + L LY L S+ +
Sbjct: 274 TYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKL-SSVPGVR 332
Query: 282 INGDMNNRIPHNLNI-SFNFIEG------ESLLMAIKDIAVSSGSACTSASLEPSYVLRA 334
I G + + +FN +EG + L +A+ SG C +P + R
Sbjct: 333 IYGPKPSEGVGRAALCAFN-VEGIHPTDLSTFLDQQHGVAIRSGHHCA----QPLH--RY 385
Query: 335 LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
LG N A +S+ F + T++E+D I LK
Sbjct: 386 LGVNAS-ARASLYF----YNTKEEVDAFIHALK 413
Score = 94.4 bits (235), Expect = 9e-20
Identities = 107/397 (26%), Positives = 173/397 (43%), Gaps = 43/397 (10%)
Query: 1395 NIVFKD-ATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA 1452
+V+ D A T P V+D + Y N H A A E AR +VA I A
Sbjct: 32 KLVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINA 91
Query: 1453 -DPREIIWTSGATESNNLAIK--GAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFR 1508
REI++T ATE+ NL G A+ K G +I EH S + + + + G
Sbjct: 92 STSREIVFTRNATEAINLVAYTWGLANL--KPGDEVILSVAEHHSNIVPWQLVAQKTGAV 149
Query: 1509 VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCD 1568
+ ++ + ++ + QL+E + T LV+ V+N +G I P+ +I + G D
Sbjct: 150 LKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVD 209
Query: 1569 AAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGG------- 1621
A Q+V + +++Q D + S+HK+ GP GIG L+ + + + + GG
Sbjct: 210 ACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVF 269
Query: 1622 --GHEYG-----LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESI 1673
Y +GT A + +G+G A L+ I M + + L LY L S+
Sbjct: 270 LDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKL-SSV 328
Query: 1674 EEIYINGDMNNRIPHNLNI-SFNFIEG------ESLLMAIKDIAVSSGSACTSASLEPSY 1726
+ I G + + +FN +EG + L +A+ SG C +P +
Sbjct: 329 PGVRIYGPKPSEGVGRAALCAFN-VEGIHPTDLSTFLDQQHGVAIRSGHHCA----QPLH 383
Query: 1727 VLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763
R LG N A +S+ F + T++E+D I LK
Sbjct: 384 --RYLGVNAS-ARASLYF----YNTKEEVDAFIHALK 413
>gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine
desulfurase/selenocysteine lyase; Validated.
Length = 406
Score = 93.3 bits (232), Expect = 2e-19
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 39 AEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHK 97
A + +E R + A I A E+++ G TE NL + + G +II + EH
Sbjct: 65 ATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHH 124
Query: 98 SVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 156
+ + + L G + + +G + L L T L+++ V+N +G P+
Sbjct: 125 ANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLA 184
Query: 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRR 212
E+ L G D AQAV +++Q D FS HK+YGP GIG LY++
Sbjct: 185 EMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE 240
Score = 93.3 bits (232), Expect = 2e-19
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 1435 AEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHK 1493
A + +E R + A I A E+++ G TE NL + + G +II + EH
Sbjct: 65 ATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHH 124
Query: 1494 SVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 1552
+ + + L G + + +G + L L T L+++ V+N +G P+
Sbjct: 125 ANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLA 184
Query: 1553 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRR 1608
E+ L G D AQAV +++Q D FS HK+YGP GIG LY++
Sbjct: 185 EMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE 240
>gnl|CDD|110518 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis. This
family is involved in iron-sulphur cluster biosynthesis.
Its members include proteins that are involved in
nitrogen fixation such as the HesB and HesB-like
proteins.
Length = 91
Score = 82.2 bits (204), Expect = 1e-18
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 470 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 529
+T AAK+I K + G GLR+GV GCSG SY L + DE + D+VF+ +GV + +
Sbjct: 3 LTDAAAKHIKKLLDLEGGENGLRIGVRYGGCSGFSYGLTFEDEPDEGDEVFEQDGVTVVV 62
Query: 530 NEKDLLYFND 539
+EK L Y
Sbjct: 63 DEKSLPYLEG 72
Score = 82.2 bits (204), Expect = 1e-18
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 1866 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 1925
+T AAK+I K + G GLR+GV GCSG SY L + DE + D+VF+ +GV + +
Sbjct: 3 LTDAAAKHIKKLLDLEGGENGLRIGVRYGGCSGFSYGLTFEDEPDEGDEVFEQDGVTVVV 62
Query: 1926 NEKDLLYFND 1935
+EK L Y
Sbjct: 63 DEKSLPYLEG 72
>gnl|CDD|213674 TIGR02011, IscA, iron-sulfur cluster assembly protein IscA. This
model represents the IscA component of the ISC system
for iron-sulfur cluster assembly. The ISC system
consists of IscRASU, HscAB and an Isc-specific
ferredoxin. IscA previously was believed to act as a
scaffold and now is seen as an iron donor protein. This
clade is limited to the proteobacteria [Biosynthesis of
cofactors, prosthetic groups, and carriers, Other].
Length = 105
Score = 82.2 bits (203), Expect = 3e-18
Identities = 34/69 (49%), Positives = 46/69 (66%)
Query: 470 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 529
+T AA +N ++ RGKG GLRLGV GCSG++Y LE+VDE +D VF+ GV+I I
Sbjct: 3 LTDSAAARVNTFLANRGKGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVI 62
Query: 530 NEKDLLYFN 538
+ K L Y +
Sbjct: 63 DGKSLQYLD 71
Score = 82.2 bits (203), Expect = 3e-18
Identities = 34/69 (49%), Positives = 46/69 (66%)
Query: 1866 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 1925
+T AA +N ++ RGKG GLRLGV GCSG++Y LE+VDE +D VF+ GV+I I
Sbjct: 3 LTDSAAARVNTFLANRGKGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVI 62
Query: 1926 NEKDLLYFN 1934
+ K L Y +
Sbjct: 63 DGKSLQYLD 71
>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein,
VC1184 subfamily. This model describes a subfamily of
probable pyridoxal phosphate-dependent enzymes in the
aminotransferase class V family (pfam00266). The most
closely related characterized proteins are active as
cysteine desulfurases, selenocysteine lyases, or both;
some are involved in FeS cofactor biosynthesis and are
designated NifS. An active site Cys residue present in
those sequences, in motifs resembling GHHC or GSAC, is
not found in this family. The function of members of
this family is unknown, but seems unlike to be as an
aminotransferase [Unknown function, Enzymes of unknown
specificity].
Length = 397
Score = 88.3 bits (219), Expect = 6e-18
Identities = 88/399 (22%), Positives = 154/399 (38%), Gaps = 55/399 (13%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
D A T I V D + L + + A++ ++ AR VA L+ ADP E
Sbjct: 21 FDNPAGTQIPQSVADAVSAALT-RSNANRGGAYESSRRADQVVDDAREAVADLLNADPPE 79
Query: 61 IIWTSGATESNNLAIKGAAHFYK--KRGKHIITVQTEHKSVLDS-IRKLENDG--FRVTY 115
+++ + AT L + + G +I + +H++ + ++ E G +
Sbjct: 80 VVFGANATS---LTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWAR 136
Query: 116 LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175
+ L L + T LV+V +N +G I + I EL + G + DA
Sbjct: 137 VDEATGELHP-DDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVH 195
Query: 176 AVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRN----------------PRTRIE 219
I++Q D ++ SA+K +GP +G L+ R R E
Sbjct: 196 YAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPELLMNLPPYKLTFSYDTGPERFE 254
Query: 220 AQIHGGGHEYGLRSGTLATHQ-IVGMGE-AFRLARIEMKEELKRILFLQKRLYNGLMESI 277
G +Y L +G +A + G+GE A R + + I + RL L+ +
Sbjct: 255 L----GTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGL 310
Query: 278 EE-----IYINGDMNNRIPHNLNISFNFIEGES-----LLMAIKDIAVSSGSACTSASLE 327
+ +Y + R+P +SF + G +A + I +G
Sbjct: 311 SDLPGVTLYGVARLAARVP---TVSFT-VHGLPPQRVVRRLADQGIDAWAGHFYAVR--- 363
Query: 328 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366
+LR LG NDE +R + + T +E+D ++ L
Sbjct: 364 ---LLRRLGLNDE--GGVVRVGLAHYNTAEEVDRLLEAL 397
Score = 85.6 bits (212), Expect = 6e-17
Identities = 90/401 (22%), Positives = 156/401 (38%), Gaps = 57/401 (14%)
Query: 1397 VFKD--ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 1454
VF D A T I V D + L + + A++ ++ AR VA L+ ADP
Sbjct: 19 VFFDNPAGTQIPQSVADAVSAALT-RSNANRGGAYESSRRADQVVDDAREAVADLLNADP 77
Query: 1455 REIIWTSGATESNNLAIKGAAHFYK--KRGKHIITVQTEHKSVLDS-IRKLENDG--FRV 1509
E+++ + AT L + + G +I + +H++ + ++ E G +
Sbjct: 78 PEVVFGANATS---LTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKW 134
Query: 1510 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA 1569
+ L L + T LV+V +N +G I + I EL + G + DA
Sbjct: 135 ARVDEATGELHP-DDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDA 193
Query: 1570 AQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRN----------------PRTR 1613
I++Q D ++ SA+K +GP +G L+ R R
Sbjct: 194 VHYAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPELLMNLPPYKLTFSYDTGPER 252
Query: 1614 IEAQIHGGGHEYGLRSGTLATHQ-IVGMGE-AFRLARIEMKEELKRILFLQKRLYNGLME 1671
E G +Y L +G +A + G+GE A R + + I + RL L+
Sbjct: 253 FEL----GTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLV 308
Query: 1672 SIEE-----IYINGDMNNRIPHNLNISFNFIEGES-----LLMAIKDIAVSSGSACTSAS 1721
+ + +Y + R+P +SF + G +A + I +G
Sbjct: 309 GLSDLPGVTLYGVARLAARVP---TVSFT-VHGLPPQRVVRRLADQGIDAWAGHFYAVR- 363
Query: 1722 LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 1762
+LR LG NDE +R + + T +E+D ++ L
Sbjct: 364 -----LLRRLGLNDE--GGVVRVGLAHYNTAEEVDRLLEAL 397
>gnl|CDD|223393 COG0316, sufA, Fe-S cluster assembly scaffold protein
[Posttranslational modification, protein turnover,
chaperones].
Length = 110
Score = 77.2 bits (191), Expect = 2e-16
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 470 VTKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 528
+T AA + + K G + +GLR+GV GCSG Y LE+ DE ++D VF+ +GV++
Sbjct: 7 LTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVV 66
Query: 529 INEKDLLYFND 539
++ K L Y
Sbjct: 67 VDPKSLPYLEG 77
Score = 77.2 bits (191), Expect = 2e-16
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1866 VTKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 1924
+T AA + + K G + +GLR+GV GCSG Y LE+ DE ++D VF+ +GV++
Sbjct: 7 LTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVV 66
Query: 1925 INEKDLLYFND 1935
++ K L Y
Sbjct: 67 VDPKSLPYLEG 77
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 82.3 bits (204), Expect = 6e-16
Identities = 86/427 (20%), Positives = 150/427 (35%), Gaps = 93/427 (21%)
Query: 638 VSIGIDFGTTNSLVA--IVRNNIPEVL-------KDKYGYFLIPSIVRYLPDGKIY-VGK 687
+ +GIDFGTT S VA + ++ P++ + GY +P+ + Y P+GK+ G
Sbjct: 1 LVVGIDFGTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILYDPEGKLVAWGY 60
Query: 688 KAK--ITQNIDPKNTISSIKRF----IARDLKNINTNSFPYDFQNKFGMLHIKTISGIKS 741
+A+ + + F LK +K + K+
Sbjct: 61 EAEREYAELEAEDEGWLFFEWFKLLLDPDALKLQG-------------DDKLKPLPPGKT 107
Query: 742 PIEISA----QIFITLKKIAENAVNNRIFGA-----VITVPAYFNDIQRQFTKNAAKLAG 792
+++ A ++ + + N F A V+TVPA ++D +Q + AA AG
Sbjct: 108 AVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAG 167
Query: 793 LNV-------LRLLNEPTSAAIA----YKLDKNIFEG-IFAVYDLGGGTFDIS---ILKF 837
L L ++ EP +AA+ + N+ G F V D GGGT D++ +
Sbjct: 168 LVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSV 227
Query: 838 KNGVFKVLSVGGDSNLGG------------------DDFDYCLFS--W-IVKNAFL-KKL 875
+ K L+ G G W I+ F K
Sbjct: 228 EPLRLKELAAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETIKR 287
Query: 876 SYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITI---DMKQFFTITQHLVNRT 932
S+ + +L ++ + + I DMK F ++
Sbjct: 288 SFGG------TDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLF---DPVIEEI 338
Query: 933 I-LLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLTSIDPDKAVV 988
I L+ + ++ + + LVGG ++ + F +L DP AVV
Sbjct: 339 IDLI--EEQLEQAEKGDKVKYIFLVGGFGESPYLRSRLKERFSSRGIRVLRPPDPQLAVV 396
Query: 989 FGAAIQA 995
GA +
Sbjct: 397 RGAVLFG 403
Score = 82.3 bits (204), Expect = 6e-16
Identities = 86/427 (20%), Positives = 150/427 (35%), Gaps = 93/427 (21%)
Query: 2034 VSIGIDFGTTNSLVA--IVRNNIPEVL-------KDKYGYFLIPSIVRYLPDGKIY-VGK 2083
+ +GIDFGTT S VA + ++ P++ + GY +P+ + Y P+GK+ G
Sbjct: 1 LVVGIDFGTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILYDPEGKLVAWGY 60
Query: 2084 KAK--ITQNIDPKNTISSIKRF----IARDLKNINTNSFPYDFQNKFGMLHIKTISGIKS 2137
+A+ + + F LK +K + K+
Sbjct: 61 EAEREYAELEAEDEGWLFFEWFKLLLDPDALKLQG-------------DDKLKPLPPGKT 107
Query: 2138 PIEISA----QIFITLKKIAENAVNNRIFGA-----VITVPAYFNDIQRQFTKNAAKLAG 2188
+++ A ++ + + N F A V+TVPA ++D +Q + AA AG
Sbjct: 108 AVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAG 167
Query: 2189 LNV-------LRLLNEPTSAAIA----YKLDKNIFEG-IFAVYDLGGGTFDIS---ILKF 2233
L L ++ EP +AA+ + N+ G F V D GGGT D++ +
Sbjct: 168 LVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSV 227
Query: 2234 KNGVFKVLSVGGDSNLGG------------------DDFDYCLFS--W-IVKNAFL-KKL 2271
+ K L+ G G W I+ F K
Sbjct: 228 EPLRLKELAAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETIKR 287
Query: 2272 SYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITI---DMKQFFTITQHLVNRT 2328
S+ + +L ++ + + I DMK F ++
Sbjct: 288 SFGG------TDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLF---DPVIEEI 338
Query: 2329 I-LLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLTSIDPDKAVV 2384
I L+ + ++ + + LVGG ++ + F +L DP AVV
Sbjct: 339 IDLI--EEQLEQAEKGDKVKYIFLVGGFGESPYLRSRLKERFSSRGIRVLRPPDPQLAVV 396
Query: 2385 FGAAIQA 2391
GA +
Sbjct: 397 RGAVLFG 403
>gnl|CDD|178203 PLN02593, PLN02593, adrenodoxin-like ferredoxin protein.
Length = 117
Score = 75.5 bits (186), Expect = 7e-16
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 2538 GISLCDALLKNSIFIEHACEKSCACATCHVII--REGFNEINKANEVEEDMLNKAWGLEE 2595
G+SL +A +N I +E ACE S AC+TCHVI+ + +N++ + + E DML+ A+GL E
Sbjct: 20 GMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTE 79
Query: 2596 NSRLSCQ 2602
SRL CQ
Sbjct: 80 TSRLGCQ 86
Score = 69.0 bits (169), Expect = 1e-13
Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 1142 GISLCDALLKNSIFIEHACEKSCACATCHVII--REGFNEINKANEVEEDMLNKAWGLEE 1199
G+SL +A +N I +E ACE S AC+TCHVI+ + +N++ + + E DML+ A+GL E
Sbjct: 20 GMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTE 79
Query: 1200 NSRL 1203
SRL
Sbjct: 80 TSRL 83
>gnl|CDD|233676 TIGR01994, SUF_scaf_2, SUF system FeS assembly protein, NifU
family. Three iron-sulfur cluster assembly systems are
known so far. ISC is broadly distributed while NIF tends
to be associated with nitrogenase in nitrogen-fixing
bacteria. The most recently described is SUF, believed
to be important to maintain the function during aerobic
stress of enzymes with labile Fe-S clusters. It is
fairly widely distributed. This family represents one of
two different proteins proposed to act as a scaffold on
which the Fe-S cluster is built and from which it is
transferred [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 137
Score = 75.8 bits (187), Expect = 9e-16
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
Y + +LDHY+NPR+ G E D TV P CGD + L +K+ I D F+ G
Sbjct: 5 YRQVILDHYKNPRHRGKLE--DATVQERGHN-PTCGDEITLTVKLE-GDRIEDIAFEGEG 60
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSI 460
C + AS+S++TE +KGKT++EA+S+
Sbjct: 61 CSISQASASMMTELIKGKTVEEALSL 86
Score = 75.8 bits (187), Expect = 9e-16
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
Y + +LDHY+NPR+ G E D TV P CGD + L +K+ I D F+ G
Sbjct: 5 YRQVILDHYKNPRHRGKLE--DATVQERGHN-PTCGDEITLTVKLE-GDRIEDIAFEGEG 60
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSI 1856
C + AS+S++TE +KGKT++EA+S+
Sbjct: 61 CSISQASASMMTELIKGKTVEEALSL 86
>gnl|CDD|181914 PRK09502, iscA, iron-sulfur cluster assembly protein; Provisional.
Length = 107
Score = 74.5 bits (183), Expect = 1e-15
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 470 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 529
++ AA +N ++ RGKG GLRLGV GCSG++Y LE+VDE ED VF+ GV++ +
Sbjct: 5 LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVV 64
Query: 530 NEKDLLYFN 538
+ K L + +
Sbjct: 65 DGKSLQFLD 73
Score = 74.5 bits (183), Expect = 1e-15
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 1866 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 1925
++ AA +N ++ RGKG GLRLGV GCSG++Y LE+VDE ED VF+ GV++ +
Sbjct: 5 LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVV 64
Query: 1926 NEKDLLYFN 1934
+ K L + +
Sbjct: 65 DGKSLQFLD 73
>gnl|CDD|232799 TIGR00049, TIGR00049, Iron-sulfur cluster assembly accessory
protein. Proteins in this subfamily appear to be
associated with the process of FeS-cluster assembly. The
HesB proteins are associated with the nif gene cluster
and the Rhizobium gene IscN has been shown to be
required for nitrogen fixation. Nitrogenase includes
multiple FeS clusters and many genes for their assembly.
The E. coli SufA protein is associated with SufS, a NifS
homolog and SufD which are involved in the FeS cluster
assembly of the FhnF protein. The Azotobacter protein
IscA (homologs of which are also found in E.coli) is
associated which IscS, another NifS homolog and IscU, a
nifU homolog as well as other factors consistent with a
role in FeS cluster chemistry. A homolog from Geobacter
contains a selenocysteine in place of an otherwise
invariant cysteine, further suggesting a role in redox
chemistry [Biosynthesis of cofactors, prosthetic groups,
and carriers, Other].
Length = 105
Score = 73.0 bits (180), Expect = 4e-15
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 470 VTKKAAKYINKYIQKRGK-GIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 528
+T AAK I + G+ +GLR+GV GCSGL Y LE+ DE ++D+VF+ +GV++
Sbjct: 2 LTDSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVV 61
Query: 529 INEKDLLY 536
++ K L Y
Sbjct: 62 VDPKSLPY 69
Score = 73.0 bits (180), Expect = 4e-15
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 1866 VTKKAAKYINKYIQKRGK-GIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 1924
+T AAK I + G+ +GLR+GV GCSGL Y LE+ DE ++D+VF+ +GV++
Sbjct: 2 LTDSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVV 61
Query: 1925 INEKDLLY 1932
++ K L Y
Sbjct: 62 VDPKSLPY 69
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 76.0 bits (188), Expect = 7e-14
Identities = 63/249 (25%), Positives = 100/249 (40%), Gaps = 54/249 (21%)
Query: 640 IGIDFGTTNSLVAIVRNNIPE--VLKDKYGYFLIPSIVRY-----LPDGKIYVGKKAKIT 692
+GIDFGT+NS VA+ R+ P L+ PS + + + ++ G+ A I
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTL--PSALFFPHEESALEREVLFGRAA-IA 57
Query: 693 QNID-PKNT--ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQI 749
++ P + S+K F+ L I G + E
Sbjct: 58 AYLEGPGEGRLMRSLKSFLGSSL------------------FRETRIFGRRLTFEDLVAR 99
Query: 750 FIT-LKKIAENAVNNRIFGAVITVPAYFNDI--------QRQFTKNAAKLAGLNVLRLLN 800
F+ LK+ AE A+ I VI P +F + + AA+ AG +
Sbjct: 100 FLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRA-AARAAGFKDVEFQY 158
Query: 801 EPTSAAIAY--KLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFK-------VLSVGGDS 851
EP +AA+ Y +L + E + V D+GGGT D S+++ +L+ G
Sbjct: 159 EPIAAALDYEQRLTR---EELVLVVDIGGGTSDFSLVRLGPSRRGRADRRADILAHSGV- 214
Query: 852 NLGGDDFDY 860
+GG DFD
Sbjct: 215 RIGGTDFDR 223
Score = 76.0 bits (188), Expect = 7e-14
Identities = 63/249 (25%), Positives = 100/249 (40%), Gaps = 54/249 (21%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPE--VLKDKYGYFLIPSIVRY-----LPDGKIYVGKKAKIT 2088
+GIDFGT+NS VA+ R+ P L+ PS + + + ++ G+ A I
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTL--PSALFFPHEESALEREVLFGRAA-IA 57
Query: 2089 QNID-PKNT--ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQI 2145
++ P + S+K F+ L I G + E
Sbjct: 58 AYLEGPGEGRLMRSLKSFLGSSL------------------FRETRIFGRRLTFEDLVAR 99
Query: 2146 FIT-LKKIAENAVNNRIFGAVITVPAYFNDI--------QRQFTKNAAKLAGLNVLRLLN 2196
F+ LK+ AE A+ I VI P +F + + AA+ AG +
Sbjct: 100 FLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRA-AARAAGFKDVEFQY 158
Query: 2197 EPTSAAIAY--KLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFK-------VLSVGGDS 2247
EP +AA+ Y +L + E + V D+GGGT D S+++ +L+ G
Sbjct: 159 EPIAAALDYEQRLTR---EELVLVVDIGGGTSDFSLVRLGPSRRGRADRRADILAHSGV- 214
Query: 2248 NLGGDDFDY 2256
+GG DFD
Sbjct: 215 RIGGTDFDR 223
Score = 36.0 bits (84), Expect = 0.25
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 891 KELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDI 950
K LS Q ++++ + + + +F + R +AL A ++ I
Sbjct: 311 KIALSSQDETRIDLDFVEVGL-EAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAI 369
Query: 951 NNVILVGGSTRMKHI 965
+ V L GGS+ + +
Sbjct: 370 DRVFLTGGSSLVPAV 384
Score = 36.0 bits (84), Expect = 0.25
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 2287 KELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDI 2346
K LS Q ++++ + + + +F + R +AL A ++ I
Sbjct: 311 KIALSSQDETRIDLDFVEVGL-EAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAI 369
Query: 2347 NNVILVGGSTRMKHI 2361
+ V L GGS+ + +
Sbjct: 370 DRVFLTGGSSLVPAV 384
>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional.
Length = 176
Score = 69.7 bits (171), Expect = 4e-13
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 539 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLE 598
D F ++ +++ +T N+AY L+DP R+ YL L G+D+ + N FL
Sbjct: 39 DRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVDVQAENNTAMPPAFLM 98
Query: 599 QQMKWRETLSIIKNKKDKVKFMALL 623
QQM+WRE + + +D ALL
Sbjct: 99 QQMEWREAIEDARAARDVDALDALL 123
Score = 69.7 bits (171), Expect = 4e-13
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 1935 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLE 1994
D F ++ +++ +T N+AY L+DP R+ YL L G+D+ + N FL
Sbjct: 39 DRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVDVQAENNTAMPPAFLM 98
Query: 1995 QQMKWRETLSIIKNKKDKVKFMALL 2019
QQM+WRE + + +D ALL
Sbjct: 99 QQMEWREAIEDARAARDVDALDALL 123
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 68.2 bits (167), Expect = 1e-12
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 12/157 (7%)
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
++ T +N A+ G +I H S E G + + +
Sbjct: 20 AVFVPSGTGANEAAL----LALLGPGDEVIVDANGHGSRYWVAA--ELAGAKPVPVPVDD 73
Query: 121 N--GLITLSQLEEKICSDTI-LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV 177
G + ++ LEE + L+ + GV+ P+ EI ++ + G++ DAA A
Sbjct: 74 AGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAG 133
Query: 178 GKIDIN---IQNYKVDLMSFSAHKIYGPKGIGALYIR 211
G I D+++FS HK G +G G + ++
Sbjct: 134 GASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170
Score = 68.2 bits (167), Expect = 1e-12
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 12/157 (7%)
Query: 1457 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 1516
++ T +N A+ G +I H S E G + + +
Sbjct: 20 AVFVPSGTGANEAAL----LALLGPGDEVIVDANGHGSRYWVAA--ELAGAKPVPVPVDD 73
Query: 1517 N--GLITLSQLEEKICSDTI-LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV 1573
G + ++ LEE + L+ + GV+ P+ EI ++ + G++ DAA A
Sbjct: 74 AGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAG 133
Query: 1574 GKIDIN---IQNYKVDLMSFSAHKIYGPKGIGALYIR 1607
G I D+++FS HK G +G G + ++
Sbjct: 134 GASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170
>gnl|CDD|179335 PRK01773, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 66.7 bits (163), Expect = 3e-12
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 539 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLN-GIDLNTKLNLNFSHDFL 597
DNF S +Q +++ S +N A ILKDP LR+ + LN G N + FL
Sbjct: 35 DNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQQNLEEKSTQDMAFL 94
Query: 598 EQQMKWRETLSIIKNKKDKVKFMALLQ 624
QQM+WRE L I+ ++D+ A +
Sbjct: 95 MQQMEWREQLEEIEQQQDEDALTAFSK 121
Score = 66.7 bits (163), Expect = 3e-12
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 1935 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLN-GIDLNTKLNLNFSHDFL 1993
DNF S +Q +++ S +N A ILKDP LR+ + LN G N + FL
Sbjct: 35 DNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQQNLEEKSTQDMAFL 94
Query: 1994 EQQMKWRETLSIIKNKKDKVKFMALLQ 2020
QQM+WRE L I+ ++D+ A +
Sbjct: 95 MQQMEWREQLEEIEQQQDEDALTAFSK 121
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 68.6 bits (168), Expect = 2e-11
Identities = 50/211 (23%), Positives = 80/211 (37%), Gaps = 32/211 (15%)
Query: 64 TSGATESNNLAIKGA-AHFYKKRGKH---------IITVQTEHKSVLDSIRKLENDGFRV 113
TSG TE+N LA+ A + K+ I+ +T H S + R L G +
Sbjct: 125 TSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL---GLGL 181
Query: 114 TYLK-PKNNGLITLSQLEEKICSDTILVSVMLV--NNEIGVIQPILEIGELCRSKGVIFH 170
+ + I + LEE I +TI V+ + G I I E+ ++ G+ H
Sbjct: 182 RRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLH 241
Query: 171 CDAA---QAV------GKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEA 220
DAA + G+ D ++ VD ++ HK P G G + R+
Sbjct: 242 VDAAFGGFLLPFLEPDGRWDFGLEG--VDSITVDGHKYGLAPIGCGVVLF-RDEEALRRI 298
Query: 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLA 251
I +Y L G + I+G +
Sbjct: 299 LIF---ADYYLPGGGIPNFTILGSRPGRQAL 326
Score = 68.6 bits (168), Expect = 2e-11
Identities = 50/211 (23%), Positives = 80/211 (37%), Gaps = 32/211 (15%)
Query: 1460 TSGATESNNLAIKGA-AHFYKKRGKH---------IITVQTEHKSVLDSIRKLENDGFRV 1509
TSG TE+N LA+ A + K+ I+ +T H S + R L G +
Sbjct: 125 TSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL---GLGL 181
Query: 1510 TYLK-PKNNGLITLSQLEEKICSDTILVSVMLV--NNEIGVIQPILEIGELCRSKGVIFH 1566
+ + I + LEE I +TI V+ + G I I E+ ++ G+ H
Sbjct: 182 RRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLH 241
Query: 1567 CDAA---QAV------GKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEA 1616
DAA + G+ D ++ VD ++ HK P G G + R+
Sbjct: 242 VDAAFGGFLLPFLEPDGRWDFGLEG--VDSITVDGHKYGLAPIGCGVVLF-RDEEALRRI 298
Query: 1617 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLA 1647
I +Y L G + I+G +
Sbjct: 299 LIF---ADYYLPGGGIPNFTILGSRPGRQAL 326
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat shock
cognate protein) of a pair of proteins Hsc66-Hsc20,
related to the DnaK-DnaJ heat shock proteins, which also
serve as molecular chaperones. Hsc20, unlike DnaJ,
appears not to have chaperone activity on its own, but
to act solely as a regulatory subunit for Hsc66 (i.e.,
to be a co-chaperone). The gene for Hsc20 in E. coli,
hscB, is not induced by heat shock [Protein fate,
Protein folding and stabilization].
Length = 155
Score = 63.7 bits (155), Expect = 3e-11
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 544 KSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKW 603
+Q A+ + ST LN+AY LKDP R+ Y+ KL IDL + F + +K
Sbjct: 25 GMAQEQLAASQQSTTLNQAYHTLKDPLRRAEYMLKLLNIDLTQEQTSERDTAFPMELLKV 84
Query: 604 RETLSIIKNKKD 615
R+ L I+ D
Sbjct: 85 RDELDEIEQMDD 96
Score = 63.7 bits (155), Expect = 3e-11
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 1940 KSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKW 1999
+Q A+ + ST LN+AY LKDP R+ Y+ KL IDL + F + +K
Sbjct: 25 GMAQEQLAASQQSTTLNQAYHTLKDPLRRAEYMLKLLNIDLTQEQTSERDTAFPMELLKV 84
Query: 2000 RETLSIIKNKKD 2011
R+ L I+ D
Sbjct: 85 RDELDEIEQMDD 96
>gnl|CDD|185668 PTZ00490, PTZ00490, Ferredoxin superfamily; Provisional.
Length = 143
Score = 63.0 bits (153), Expect = 4e-11
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 2538 GISLCDALLKNS-IFIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLEE 2595
G+SL AL + + +E C CATCHV + F ++ +E EED+L KA ++E
Sbjct: 55 GMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVKE 114
Query: 2596 NSRLSCQ 2602
SRL+CQ
Sbjct: 115 TSRLACQ 121
Score = 56.0 bits (135), Expect = 1e-08
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1142 GISLCDALLKNS-IFIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLEE 1199
G+SL AL + + +E C CATCHV + F ++ +E EED+L KA ++E
Sbjct: 55 GMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVKE 114
Query: 1200 NSRLS 1204
SRL+
Sbjct: 115 TSRLA 119
>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional.
Length = 171
Score = 62.2 bits (152), Expect = 1e-10
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 539 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSH---D 595
D F S+ ++ +V+ + +N AY LK P R+ YL L+G DL + H D
Sbjct: 34 DKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGFDLA-----HEQHTVRD 88
Query: 596 --FLEQQMKWRETLSIIKNKKD 615
FL +QM+ RE L I+ KD
Sbjct: 89 TAFLMEQMELREELEDIEQSKD 110
Score = 62.2 bits (152), Expect = 1e-10
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 1935 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSH---D 1991
D F S+ ++ +V+ + +N AY LK P R+ YL L+G DL + H D
Sbjct: 34 DKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGFDLA-----HEQHTVRD 88
Query: 1992 --FLEQQMKWRETLSIIKNKKD 2011
FL +QM+ RE L I+ KD
Sbjct: 89 TAFLMEQMELREELEDIEQSKD 110
>gnl|CDD|234554 TIGR04343, egtE_PLP_lyase, ergothioneine biosynthesis PLP-dependent
enzyme EgtE. Members of this protein family are the
pyridoxal phosphate-dependent enzyme EgtE, which
catalyzes the final step in the biosynthesis of
ergothioneine [Biosynthesis of cofactors, prosthetic
groups, and carriers, Glutathione and analogs].
Length = 370
Score = 64.9 bits (158), Expect = 2e-10
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 19/224 (8%)
Query: 36 GWTAEKA----IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIIT 91
G+ A +A ++ R VA L ++++T+G+ + +L + + + +
Sbjct: 45 GYVAAEAAAPVLDAGRAAVAALTGMPAADVVFTTGSNHALDLLLGS----WPGPSRTVAC 100
Query: 92 VQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTI-LVSVMLVNNEIG 150
+ E+ L +I + GF V L ++G + + + +D LV + +V + G
Sbjct: 101 LPGEYGPNL-AI--MAAHGFEVRELPVDDDGRLDVDGAASALRADPPALVHLTVVGSHRG 157
Query: 151 VIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALY 209
+QP + ELCR+ GV DAAQA+G +D D S+ K + GP+G+G L
Sbjct: 158 TVQPAAAVAELCRAAGVPLVVDAAQALGHLDC---AVGADAYYSSSRKWLAGPRGVGVLA 214
Query: 210 IRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 253
+R R+ ++ + LA Q + GEA AR+
Sbjct: 215 VRPELLERLAPRLPPPDWP---EASPLAVAQRLEHGEANIAARV 255
Score = 64.9 bits (158), Expect = 2e-10
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 19/224 (8%)
Query: 1432 GWTAEKA----IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIIT 1487
G+ A +A ++ R VA L ++++T+G+ + +L + + + +
Sbjct: 45 GYVAAEAAAPVLDAGRAAVAALTGMPAADVVFTTGSNHALDLLLGS----WPGPSRTVAC 100
Query: 1488 VQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTI-LVSVMLVNNEIG 1546
+ E+ L +I + GF V L ++G + + + +D LV + +V + G
Sbjct: 101 LPGEYGPNL-AI--MAAHGFEVRELPVDDDGRLDVDGAASALRADPPALVHLTVVGSHRG 157
Query: 1547 VIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALY 1605
+QP + ELCR+ GV DAAQA+G +D D S+ K + GP+G+G L
Sbjct: 158 TVQPAAAVAELCRAAGVPLVVDAAQALGHLDC---AVGADAYYSSSRKWLAGPRGVGVLA 214
Query: 1606 IRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 1649
+R R+ ++ + LA Q + GEA AR+
Sbjct: 215 VRPELLERLAPRLPPPDWP---EASPLAVAQRLEHGEANIAARV 255
>gnl|CDD|131052 TIGR01997, sufA_proteo, FeS assembly scaffold SufA. This model
represents the SufA protein of the SUF system of
iron-sulfur cluster biosynthesis. This system performs
FeS biosynthesis even during oxidative stress and tends
to be absent in obligate anaerobic and microaerophilic
bacteria [Biosynthesis of cofactors, prosthetic groups,
and carriers, Other].
Length = 107
Score = 55.6 bits (134), Expect = 5e-09
Identities = 23/66 (34%), Positives = 43/66 (65%)
Query: 471 TKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFIN 530
T AA +I + + KR + +G+RLGV GC+G+ Y L+ V E +K+D + + +G ++F+
Sbjct: 6 TDAAAIHIRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVA 65
Query: 531 EKDLLY 536
+ +L+
Sbjct: 66 PEAVLF 71
Score = 55.6 bits (134), Expect = 5e-09
Identities = 23/66 (34%), Positives = 43/66 (65%)
Query: 1867 TKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFIN 1926
T AA +I + + KR + +G+RLGV GC+G+ Y L+ V E +K+D + + +G ++F+
Sbjct: 6 TDAAAIHIRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVA 65
Query: 1927 EKDLLY 1932
+ +L+
Sbjct: 66 PEAVLF 71
>gnl|CDD|238126 cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur
proteins play an important role in electron transfer
processes and in various enzymatic reactions. The family
includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis and ferredoxins,
which participate in redox chains (from bacteria to
mammals). Fold is ismilar to thioredoxin.
Length = 84
Score = 54.7 bits (132), Expect = 6e-09
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 2529 NGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLN 2588
+G G +L DA + I I ++C AC TC V + EG + + L
Sbjct: 8 SGVEVEVPEGETLLDAAREAGIDIPYSCRAG-ACGTCKVEVVEGEVDQ------SDPSLL 60
Query: 2589 KAWGLEENSRLSCQ 2602
E L+CQ
Sbjct: 61 DEEEAEGGYVLACQ 74
Score = 47.4 bits (113), Expect = 2e-06
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 1133 NGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLN 1192
+G G +L DA + I I ++C AC TC V + EG + + L
Sbjct: 8 SGVEVEVPEGETLLDAAREAGIDIPYSCRAG-ACGTCKVEVVEGEVDQ------SDPSLL 60
Query: 1193 KAWGLEENSRLS 1204
E L+
Sbjct: 61 DEEEAEGGYVLA 72
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational
modification, protein turnover, chaperones].
Length = 174
Score = 57.0 bits (138), Expect = 9e-09
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 511 DEKRKEDQVFKLNGVQIFINEKDLLYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPF 570
R +Q E Y D F + S+ +Q +++ S +N AY LKDP
Sbjct: 8 GLPRAFQIDLDALKLQYR--ELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPL 65
Query: 571 LRSIY-LCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALLQISEPD 629
LR+ Y L +G+D + FL +Q + RE L + + D+ + +L +
Sbjct: 66 LRAEYLLALADGLDHAKERQTLRDIAFLLEQSELREELEEAREQLDREDALKVLGVEIKA 125
Query: 630 DI 631
D
Sbjct: 126 DQ 127
Score = 57.0 bits (138), Expect = 9e-09
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 1907 DEKRKEDQVFKLNGVQIFINEKDLLYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPF 1966
R +Q E Y D F + S+ +Q +++ S +N AY LKDP
Sbjct: 8 GLPRAFQIDLDALKLQYR--ELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPL 65
Query: 1967 LRSIY-LCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALLQISEPD 2025
LR+ Y L +G+D + FL +Q + RE L + + D+ + +L +
Sbjct: 66 LRAEYLLALADGLDHAKERQTLRDIAFLLEQSELREELEEAREQLDREDALKVLGVEIKA 125
Query: 2026 DI 2027
D
Sbjct: 126 DQ 127
>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 54.1 bits (130), Expect = 8e-08
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 539 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLE 598
D F + +Q +++ S LN+AY LK P R+ YL L+G ++ ++ ++ +FL
Sbjct: 37 DRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGHEVPLEVTVH-DPEFLL 95
Query: 599 QQMKWRETLSIIKNKKD 615
QQM+ RE L ++++ D
Sbjct: 96 QQMQLREELEELQDEAD 112
Score = 54.1 bits (130), Expect = 8e-08
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 1935 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLE 1994
D F + +Q +++ S LN+AY LK P R+ YL L+G ++ ++ ++ +FL
Sbjct: 37 DRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGHEVPLEVTVH-DPEFLL 95
Query: 1995 QQMKWRETLSIIKNKKD 2011
QQM+ RE L ++++ D
Sbjct: 96 QQMQLREELEELQDEAD 112
>gnl|CDD|181915 PRK09504, sufA, iron-sulfur cluster assembly scaffold protein;
Provisional.
Length = 122
Score = 52.8 bits (127), Expect = 8e-08
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 470 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 529
+T AA +I + + K+ G+RLGV GC+G Y L+ V E K+D VF+ +G ++F+
Sbjct: 20 LTPAAAAHIRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFV 79
Score = 52.8 bits (127), Expect = 8e-08
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 1866 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 1925
+T AA +I + + K+ G+RLGV GC+G Y L+ V E K+D VF+ +G ++F+
Sbjct: 20 LTPAAAAHIRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFV 79
>gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase.
This family includes a number of 2-aminoethylphosphonate
aminotransferases, some of which are indicated to
operate in the catabolism of 2-aminoethylphosphonate
(AEP) and others which are involved in the biosynthesis
of the same compound. The catabolic enzyme (PhnW, ) is
known to use pyruvate:alanine as the transfer partner
and is modeled by the equivalog-level TIGR02326. The
PhnW family is apparently a branch of a larger tree
including genes (AepZ) adjacent to others responsible
for the biosynthesis of phosphonoacetaldehyde. The
identity of the transfer partner is unknown for these
enzymes and considering the reversed flux compared to
PhnW, it may very well be different.
Length = 355
Score = 56.2 bits (136), Expect = 1e-07
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGVIFHC 171
T L L+++EE + +D + V V++E G++ P+ I ++ RS G +
Sbjct: 101 TDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIV 160
Query: 172 DAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRR 212
DA + G I I+I+ VD + SA+K + G G G + RR
Sbjct: 161 DAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARR 202
Score = 56.2 bits (136), Expect = 1e-07
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 1510 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGVIFHC 1567
T L L+++EE + +D + V V++E G++ P+ I ++ RS G +
Sbjct: 101 TDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIV 160
Query: 1568 DAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRR 1608
DA + G I I+I+ VD + SA+K + G G G + RR
Sbjct: 161 DAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARR 202
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
MreB (mecillinam resistance) in E. coli (also called
envB) and the paralogous pair MreB and Mrl of Bacillus
subtilis have all been shown to help determine cell
shape. This protein is present in a wide variety of
bacteria, including spirochetes, but is missing from the
Mycoplasmas and from Gram-positive cocci. Most completed
bacterial genomes have a single member of this family.
In some species it is an essential gene. A close homolog
is found in the Archaeon Methanobacterium
thermoautotrophicum, and a more distant homolog in
Archaeoglobus fulgidus. The family is related to cell
division protein FtsA and heat shock protein DnaK [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 333
Score = 55.5 bits (134), Expect = 1e-07
Identities = 66/239 (27%), Positives = 103/239 (43%), Gaps = 56/239 (23%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIV--RYLPDGKIY----VGKKAKITQ 693
IGID GT N+LV + I VL + PS+V R D K VG +AK
Sbjct: 5 IGIDLGTANTLVYVKGRGI--VLNE-------PSVVAIRTDRDAKTKSILAVGHEAKEML 55
Query: 694 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITL 753
P N I +I R +K + DF+ M+ + FI
Sbjct: 56 GKTPGN-IVAI-----RPMK----DGVIADFEVTEKMI----------------KYFI-- 87
Query: 754 KKIAENAVNNRIFG--AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 811
K++ F VI VP+ ++R+ K +A AG + L+ EP +AAI L
Sbjct: 88 KQVHS---RKSFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGL 144
Query: 812 DKNIFEGIFA-VYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 869
+ E + V D+GGGT +++++ G+ S+ +GGD+FD + ++I +
Sbjct: 145 P--VEEPTGSMVVDIGGGTTEVAVISL-GGIVVSRSI----RVGGDEFDEAIINYIRRT 196
Score = 55.5 bits (134), Expect = 1e-07
Identities = 66/239 (27%), Positives = 103/239 (43%), Gaps = 56/239 (23%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIV--RYLPDGKIY----VGKKAKITQ 2089
IGID GT N+LV + I VL + PS+V R D K VG +AK
Sbjct: 5 IGIDLGTANTLVYVKGRGI--VLNE-------PSVVAIRTDRDAKTKSILAVGHEAKEML 55
Query: 2090 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITL 2149
P N I +I R +K + DF+ M+ + FI
Sbjct: 56 GKTPGN-IVAI-----RPMK----DGVIADFEVTEKMI----------------KYFI-- 87
Query: 2150 KKIAENAVNNRIFG--AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 2207
K++ F VI VP+ ++R+ K +A AG + L+ EP +AAI L
Sbjct: 88 KQVHS---RKSFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGL 144
Query: 2208 DKNIFEGIFA-VYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 2265
+ E + V D+GGGT +++++ G+ S+ +GGD+FD + ++I +
Sbjct: 145 P--VEEPTGSMVVDIGGGTTEVAVISL-GGIVVSRSI----RVGGDEFDEAIINYIRRT 196
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 55.7 bits (135), Expect = 2e-07
Identities = 48/183 (26%), Positives = 68/183 (37%), Gaps = 46/183 (25%)
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKH----------IITVQTEHKSV-------LDSIR 104
++TSG +ESN LA+ A +KR K I+ H SV +R
Sbjct: 61 VFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVR 120
Query: 105 KLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEI 158
+ D +G + LE I D I+V + G I P+ EI
Sbjct: 121 LVPVDE----------DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEI 170
Query: 159 GELCRSKGVIFHCDAAQAVGKI--------DINIQNYKVDLMSFSAHKIYG--PKGIGAL 208
+L + H DAA + D I+ VD +S HK YG P G A+
Sbjct: 171 ADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIER--VDSISVDPHK-YGLVPLGCSAV 227
Query: 209 YIR 211
+R
Sbjct: 228 LVR 230
Score = 55.7 bits (135), Expect = 2e-07
Identities = 48/183 (26%), Positives = 68/183 (37%), Gaps = 46/183 (25%)
Query: 1458 IWTSGATESNNLAIKGAAHFYKKRGKH----------IITVQTEHKSV-------LDSIR 1500
++TSG +ESN LA+ A +KR K I+ H SV +R
Sbjct: 61 VFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVR 120
Query: 1501 KLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEI 1554
+ D +G + LE I D I+V + G I P+ EI
Sbjct: 121 LVPVDE----------DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEI 170
Query: 1555 GELCRSKGVIFHCDAAQAVGKI--------DINIQNYKVDLMSFSAHKIYG--PKGIGAL 1604
+L + H DAA + D I+ VD +S HK YG P G A+
Sbjct: 171 ADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIER--VDSISVDPHK-YGLVPLGCSAV 227
Query: 1605 YIR 1607
+R
Sbjct: 228 LVR 230
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 54.3 bits (131), Expect = 5e-07
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 64 TSGATESNNLAIKGAAHFY--KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 121
SG TE+N A++ A + +KR +II ++ H S + E G + Y +
Sbjct: 82 VSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSF---EKAAEMLGLELRYAPLDED 138
Query: 122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 174
+ + +E+ I +TI + + E+G I I E+ ++ G+ H DAA
Sbjct: 139 YTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAA 191
Score = 54.3 bits (131), Expect = 5e-07
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 1460 TSGATESNNLAIKGAAHFY--KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 1517
SG TE+N A++ A + +KR +II ++ H S + E G + Y +
Sbjct: 82 VSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSF---EKAAEMLGLELRYAPLDED 138
Query: 1518 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 1570
+ + +E+ I +TI + + E+G I I E+ ++ G+ H DAA
Sbjct: 139 YTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAA 191
>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
aspartate aminotransferase [Amino acid transport and
metabolism].
Length = 383
Score = 52.6 bits (127), Expect = 2e-06
Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 18/149 (12%)
Query: 124 ITLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGVIFHCDAAQAVGKID 181
+ ++EE + D + +V +V+NE GV+ P+ EI + + G + DA ++G
Sbjct: 117 VDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEP 176
Query: 182 INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG-----------GHEY 229
+ + + +D+ + K + P G+ + + IE + H +
Sbjct: 177 LKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKK 236
Query: 230 GLRSGTLATHQIVGMGEAFRLARIEMKEE 258
G T + I + EA L + EE
Sbjct: 237 GSTPYTPPVNLIYALREALDL----ILEE 261
Score = 52.6 bits (127), Expect = 2e-06
Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 18/149 (12%)
Query: 1520 ITLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGVIFHCDAAQAVGKID 1577
+ ++EE + D + +V +V+NE GV+ P+ EI + + G + DA ++G
Sbjct: 117 VDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEP 176
Query: 1578 INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG-----------GHEY 1625
+ + + +D+ + K + P G+ + + IE + H +
Sbjct: 177 LKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKK 236
Query: 1626 GLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
G T + I + EA L + EE
Sbjct: 237 GSTPYTPPVNLIYALREALDL----ILEE 261
>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and
metabolism].
Length = 342
Score = 51.9 bits (125), Expect = 3e-06
Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 43/196 (21%)
Query: 34 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ 93
+YG + +A+L ++ T++N LA+ AAH + G+ +I +
Sbjct: 30 VYG--EDPTTNALEQRIAELF--GKEAALFVPSGTQANQLAL--AAHC--QPGESVICHE 81
Query: 94 TEH--------KSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTI------L 139
T H +KL + P +G +T +E I D I L
Sbjct: 82 TAHIYTDECGAPEFFGGGQKL--------PIVPGADGKLTPEDVEAAIRPDDIHHAPTPL 133
Query: 140 VSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQ---AVGKIDINIQNYK--VDL 191
+ E G + P + I +C+ G+ H D A+ A+ + + ++ K VD
Sbjct: 134 AVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDS 193
Query: 192 MSFSAHKIYGPKGIGA 207
+SF KG GA
Sbjct: 194 VSFC-----LTKGGGA 204
Score = 51.9 bits (125), Expect = 3e-06
Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 43/196 (21%)
Query: 1430 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ 1489
+YG + +A+L ++ T++N LA+ AAH + G+ +I +
Sbjct: 30 VYG--EDPTTNALEQRIAELF--GKEAALFVPSGTQANQLAL--AAHC--QPGESVICHE 81
Query: 1490 TEH--------KSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTI------L 1535
T H +KL + P +G +T +E I D I L
Sbjct: 82 TAHIYTDECGAPEFFGGGQKL--------PIVPGADGKLTPEDVEAAIRPDDIHHAPTPL 133
Query: 1536 VSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQ---AVGKIDINIQNYK--VDL 1587
+ E G + P + I +C+ G+ H D A+ A+ + + ++ K VD
Sbjct: 134 AVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDS 193
Query: 1588 MSFSAHKIYGPKGIGA 1603
+SF KG GA
Sbjct: 194 VSFC-----LTKGGGA 204
>gnl|CDD|215725 pfam00111, Fer2, 2Fe-2S iron-sulfur cluster binding domain.
Length = 77
Score = 46.7 bits (111), Expect = 3e-06
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 2543 DALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 2602
DA + I I ++C C TC V + EG + + +E+D L + + L+CQ
Sbjct: 21 DAAEEAGIDIPYSCRGGG-CGTCAVKVLEG-EVQSDQSFLEDDELAAGYVV-----LACQ 73
Score = 41.7 bits (98), Expect = 2e-04
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 1147 DALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGL 1197
DA + I I ++C C TC V + EG + + +E+D L + +
Sbjct: 21 DAAEEAGIDIPYSCRGGG-CGTCAVKVLEG-EVQSDQSFLEDDELAAGYVV 69
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 51.0 bits (123), Expect = 5e-06
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 19/119 (15%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS------VLD-SIRKLE-NDGFRVTY 115
TSG TE+N A++ A + K +I+ ++ H S +L +R+ +D +RV
Sbjct: 82 TSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVD- 140
Query: 116 LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 174
+ +E+ I +TI + + E+G + PI E+ ++ G+ H DAA
Sbjct: 141 ----------VKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAA 189
Score = 51.0 bits (123), Expect = 5e-06
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 19/119 (15%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS------VLD-SIRKLE-NDGFRVTY 1511
TSG TE+N A++ A + K +I+ ++ H S +L +R+ +D +RV
Sbjct: 82 TSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVD- 140
Query: 1512 LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 1570
+ +E+ I +TI + + E+G + PI E+ ++ G+ H DAA
Sbjct: 141 ----------VKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAA 189
>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
family. This family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The major groups in this CD correspond to
alanine-glyoxylate aminotransferase (AGAT),
serine-glyoxylate aminotransferase (SGAT), and
3-hydroxykynurenine transaminase (HKT). AGAT is a
homodimeric protein, which catalyses the transamination
of glyoxylate to glycine, and SGAT converts serine and
glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
the PLP-dependent transamination of 3-hydroxykynurenine,
a potentially toxic metabolite of the kynurenine
pathway.
Length = 356
Score = 50.0 bits (120), Expect = 1e-05
Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 19/186 (10%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G V ++ ++ ++ E + I +V L +NE GV+ P+ IG L +
Sbjct: 97 GADVDVVEKPWGEAVSPEEIAEALEQHDI-KAVTLTHNETSTGVLNPLEGIGALAKKHDA 155
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEA--QIHG 224
+ DA ++G + + VD+ + K G P G+G + RI+ + G
Sbjct: 156 LLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKG 215
Query: 225 G-------GHEYGLRSGTLAT---HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 274
+G T + + + EA L +E L+ +RL L
Sbjct: 216 FYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLIL---EEGLENRWARHRRLAKALR 272
Query: 275 ESIEEI 280
E +E +
Sbjct: 273 EGLEAL 278
Score = 50.0 bits (120), Expect = 1e-05
Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 19/186 (10%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
G V ++ ++ ++ E + I +V L +NE GV+ P+ IG L +
Sbjct: 97 GADVDVVEKPWGEAVSPEEIAEALEQHDI-KAVTLTHNETSTGVLNPLEGIGALAKKHDA 155
Query: 1564 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEA--QIHG 1620
+ DA ++G + + VD+ + K G P G+G + RI+ + G
Sbjct: 156 LLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKG 215
Query: 1621 G-------GHEYGLRSGTLAT---HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 1670
+G T + + + EA L +E L+ +RL L
Sbjct: 216 FYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLIL---EEGLENRWARHRRLAKALR 272
Query: 1671 ESIEEI 1676
E +E +
Sbjct: 273 EGLEAL 278
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 48.2 bits (115), Expect = 2e-05
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 753 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 812
LK E + + A +P + + N + AG+ VL +L+EPT+AA ++
Sbjct: 49 LKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK 108
Query: 813 KNIFEGIFAVYDLGGGTFDISILK 836
AV D+GGGT ISILK
Sbjct: 109 NG------AVVDVGGGTTGISILK 126
Score = 48.2 bits (115), Expect = 2e-05
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 2149 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 2208
LK E + + A +P + + N + AG+ VL +L+EPT+AA ++
Sbjct: 49 LKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK 108
Query: 2209 KNIFEGIFAVYDLGGGTFDISILK 2232
AV D+GGGT ISILK
Sbjct: 109 NG------AVVDVGGGTTGISILK 126
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 48.6 bits (117), Expect = 3e-05
Identities = 96/389 (24%), Positives = 155/389 (39%), Gaps = 110/389 (28%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRY-LPDGKIY-VGKKAKITQNIDP 697
IGID GT N+LV + I VL PS+V GKI VG++AK
Sbjct: 1 IGIDLGTANTLVYVKGKGI--VLN-------EPSVVAIDTKTGKILAVGEEAK------- 44
Query: 698 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 757
+ R NI P +K G+ + E + + L+
Sbjct: 45 --------EMLGRTPGNIEV-IRP-----------LK--DGVIADFEATEAM---LRYFI 79
Query: 758 ENAVNNRIFG---AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
+ +F VI VP+ +++R+ +AA AG + L+ EP +AAI LD
Sbjct: 80 KKVKGRSLFFRPRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLD-- 137
Query: 815 IFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG--DSNL---GGDDFDYCLFSWIV 867
IFE G V D+GGGT +I+ V+S+GG S GGDDFD I+
Sbjct: 138 IFEPKGNMVV-DIGGGTTEIA----------VISLGGIVVSKSIRVGGDDFDEA----II 182
Query: 868 KNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNV----KLSDKKIVNIT-IDMK--- 919
+ ++++ Y L+I R +E+ K+ + L +++ + + D+
Sbjct: 183 R--YVRR-KYN----LLIGERTAEEI-------KIEIGSAYPLDEEETMEVKGRDLVTGL 228
Query: 920 -QFFTITQHLVNRTILLSSKALMDANLTIK------------DI--NNVILVGGSTRMKH 964
+ +T V + +++A IK DI ++L GG ++
Sbjct: 229 PRTVEVTSEEVREALKEPLDEIVEA---IKSVLEKTPPELAADILDRGIVLTGGGALLRG 285
Query: 965 IHEGVSNFFKTTLLTSIDPDKAVVFGAAI 993
+ E +S + + DP V GA
Sbjct: 286 LDELISEETGLPVRVAEDPLTCVAKGAGK 314
Score = 48.6 bits (117), Expect = 3e-05
Identities = 96/389 (24%), Positives = 155/389 (39%), Gaps = 110/389 (28%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRY-LPDGKIY-VGKKAKITQNIDP 2093
IGID GT N+LV + I VL PS+V GKI VG++AK
Sbjct: 1 IGIDLGTANTLVYVKGKGI--VLN-------EPSVVAIDTKTGKILAVGEEAK------- 44
Query: 2094 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 2153
+ R NI P +K G+ + E + + L+
Sbjct: 45 --------EMLGRTPGNIEV-IRP-----------LK--DGVIADFEATEAM---LRYFI 79
Query: 2154 ENAVNNRIFG---AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
+ +F VI VP+ +++R+ +AA AG + L+ EP +AAI LD
Sbjct: 80 KKVKGRSLFFRPRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLD-- 137
Query: 2211 IFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG--DSNL---GGDDFDYCLFSWIV 2263
IFE G V D+GGGT +I+ V+S+GG S GGDDFD I+
Sbjct: 138 IFEPKGNMVV-DIGGGTTEIA----------VISLGGIVVSKSIRVGGDDFDEA----II 182
Query: 2264 KNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNV----KLSDKKIVNIT-IDMK--- 2315
+ ++++ Y L+I R +E+ K+ + L +++ + + D+
Sbjct: 183 R--YVRR-KYN----LLIGERTAEEI-------KIEIGSAYPLDEEETMEVKGRDLVTGL 228
Query: 2316 -QFFTITQHLVNRTILLSSKALMDANLTIK------------DI--NNVILVGGSTRMKH 2360
+ +T V + +++A IK DI ++L GG ++
Sbjct: 229 PRTVEVTSEEVREALKEPLDEIVEA---IKSVLEKTPPELAADILDRGIVLTGGGALLRG 285
Query: 2361 IHEGVSNFFKTTLLTSIDPDKAVVFGAAI 2389
+ E +S + + DP V GA
Sbjct: 286 LDELISEETGLPVRVAEDPLTCVAKGAGK 314
>gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 48.4 bits (116), Expect = 4e-05
Identities = 67/241 (27%), Positives = 102/241 (42%), Gaps = 61/241 (25%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFL-IPSIVRYLPDGKI----YVGKKAKITQN 694
IGID GT N+LV G L PS+V +GK VG++AK
Sbjct: 9 IGIDLGTANTLVY----------VKGKGIVLNEPSVVAIESEGKTKVVLAVGEEAK---Q 55
Query: 695 IDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLK 754
+ + T +I R +K+ F E+ + FI K
Sbjct: 56 MLGR-TPGNIV--AIRPMKDGVIADFEV--------------------TELMLKYFI--K 90
Query: 755 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
K+ +N + VI VP+ D++R+ K AA+ AG + L+ EP +AAI L
Sbjct: 91 KVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLP-- 148
Query: 815 IFEGIFA-VYDLGGGTFDISILKFKNGVFKVLSVGG--DSN---LGGDDFDYCLFSWIVK 868
I E + V D+GGGT +++ V+S+GG S+ +GGD D + ++ K
Sbjct: 149 IMEPTGSMVVDIGGGTTEVA----------VISLGGIVSSSSVRVGGDKMDEAIIVYVRK 198
Query: 869 N 869
Sbjct: 199 K 199
Score = 48.4 bits (116), Expect = 4e-05
Identities = 67/241 (27%), Positives = 102/241 (42%), Gaps = 61/241 (25%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFL-IPSIVRYLPDGKI----YVGKKAKITQN 2090
IGID GT N+LV G L PS+V +GK VG++AK
Sbjct: 9 IGIDLGTANTLVY----------VKGKGIVLNEPSVVAIESEGKTKVVLAVGEEAK---Q 55
Query: 2091 IDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLK 2150
+ + T +I R +K+ F E+ + FI K
Sbjct: 56 MLGR-TPGNIV--AIRPMKDGVIADFEV--------------------TELMLKYFI--K 90
Query: 2151 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
K+ +N + VI VP+ D++R+ K AA+ AG + L+ EP +AAI L
Sbjct: 91 KVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLP-- 148
Query: 2211 IFEGIFA-VYDLGGGTFDISILKFKNGVFKVLSVGG--DSN---LGGDDFDYCLFSWIVK 2264
I E + V D+GGGT +++ V+S+GG S+ +GGD D + ++ K
Sbjct: 149 IMEPTGSMVVDIGGGTTEVA----------VISLGGIVSSSSVRVGGDKMDEAIIVYVRK 198
Query: 2265 N 2265
Sbjct: 199 K 199
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 47.5 bits (114), Expect = 4e-05
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 753 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 812
LK E + + A +P ++ + N + AGL V +L+EPT+AA +D
Sbjct: 76 LKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID 135
Query: 813 KNIFEGIFAVYDLGGGTFDISILK 836
AV D+GGGT ISILK
Sbjct: 136 NG------AVVDIGGGTTGISILK 153
Score = 47.5 bits (114), Expect = 4e-05
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 2149 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 2208
LK E + + A +P ++ + N + AGL V +L+EPT+AA +D
Sbjct: 76 LKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID 135
Query: 2209 KNIFEGIFAVYDLGGGTFDISILK 2232
AV D+GGGT ISILK
Sbjct: 136 NG------AVVDIGGGTTGISILK 153
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 46.0 bits (110), Expect = 2e-04
Identities = 91/380 (23%), Positives = 149/380 (39%), Gaps = 92/380 (24%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGK--IYVGKKAKITQNIDP 697
IGID GT N+LV + K K PS+V K + VG +AK P
Sbjct: 4 IGIDLGTANTLVYV---------KGKGIVLNEPSVVAINTKTKKVLAVGNEAKKMLGRTP 54
Query: 698 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 757
N I ++ R LK+ G+ + E++ + LK
Sbjct: 55 GN-IVAV-----RPLKD-----------------------GVIADFEVTEAM---LKYFI 82
Query: 758 ENAVNNRIFG---AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
+ R VI VP+ +++R+ K AAK AG + L+ EP +AAI L
Sbjct: 83 KKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGL--P 140
Query: 815 IFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG--DSN---LGGDDFDYCLFSWIV 867
+ E G V D+GGGT +++ V+S+GG S + GD+ D + +I
Sbjct: 141 VEEPTGNMVV-DIGGGTTEVA----------VISLGGIVTSKSVRVAGDEMDEAIIKYIR 189
Query: 868 KNAFLKKLSYKDVNILMIKSR---EIK-ELLS-YQSSVKLNVKLSDKKIV-----NITID 917
K Y L+I R IK E+ S Y + + +++ + +V I I
Sbjct: 190 KK-------YN----LLIGERTAERIKIEIGSAYPTEEEEKMEIRGRDLVTGLPKTIEIS 238
Query: 918 MKQFFTITQHLVNRTILLSSKALMD--ANLTIKDI--NNVILVGGSTRMKHIHEGVSNFF 973
++ + V+ + + L L DI ++L GG ++ + + +S+
Sbjct: 239 SEEVREALKEPVSAIVEAVKEVLEKTPPEL-AADIVDRGIVLTGGGALLRGLDKLLSDET 297
Query: 974 KTTLLTSIDPDKAVVFGAAI 993
+ + DP V G
Sbjct: 298 GLPVHIAEDPLTCVALGTGK 317
Score = 46.0 bits (110), Expect = 2e-04
Identities = 91/380 (23%), Positives = 149/380 (39%), Gaps = 92/380 (24%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGK--IYVGKKAKITQNIDP 2093
IGID GT N+LV + K K PS+V K + VG +AK P
Sbjct: 4 IGIDLGTANTLVYV---------KGKGIVLNEPSVVAINTKTKKVLAVGNEAKKMLGRTP 54
Query: 2094 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 2153
N I ++ R LK+ G+ + E++ + LK
Sbjct: 55 GN-IVAV-----RPLKD-----------------------GVIADFEVTEAM---LKYFI 82
Query: 2154 ENAVNNRIFG---AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
+ R VI VP+ +++R+ K AAK AG + L+ EP +AAI L
Sbjct: 83 KKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGL--P 140
Query: 2211 IFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG--DSN---LGGDDFDYCLFSWIV 2263
+ E G V D+GGGT +++ V+S+GG S + GD+ D + +I
Sbjct: 141 VEEPTGNMVV-DIGGGTTEVA----------VISLGGIVTSKSVRVAGDEMDEAIIKYIR 189
Query: 2264 KNAFLKKLSYKDVNILMIKSR---EIK-ELLS-YQSSVKLNVKLSDKKIV-----NITID 2313
K Y L+I R IK E+ S Y + + +++ + +V I I
Sbjct: 190 KK-------YN----LLIGERTAERIKIEIGSAYPTEEEEKMEIRGRDLVTGLPKTIEIS 238
Query: 2314 MKQFFTITQHLVNRTILLSSKALMD--ANLTIKDI--NNVILVGGSTRMKHIHEGVSNFF 2369
++ + V+ + + L L DI ++L GG ++ + + +S+
Sbjct: 239 SEEVREALKEPVSAIVEAVKEVLEKTPPEL-AADIVDRGIVLTGGGALLRGLDKLLSDET 297
Query: 2370 KTTLLTSIDPDKAVVFGAAI 2389
+ + DP V G
Sbjct: 298 GLPVHIAEDPLTCVALGTGK 317
>gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
Length = 336
Score = 44.9 bits (107), Expect = 4e-04
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 43/201 (21%)
Query: 753 LKKIAENAVNNRIFGA---VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 809
LK A R F +I +P ++++ + AA+ AG + L+ EP +AAI
Sbjct: 80 LKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGA 139
Query: 810 KLDKNIFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG---DSNL--GGDDFDYCL 862
LD I + G V D+GGGT DI+ VLS+GG S++ GD FD
Sbjct: 140 GLD--ISQPSGNMVV-DIGGGTTDIA----------VLSLGGIVTSSSIKVAGDKFD--- 183
Query: 863 FSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFF 922
I++ +++K YK L+I R +E+ K+ + + ++++
Sbjct: 184 -EAIIR--YIRK-KYK----LLIGERTAEEI-------KIKIGTAFPGAREEEMEIRGRD 228
Query: 923 TITQHLVNRTILLSSKALMDA 943
+T + +TI ++S+ + +A
Sbjct: 229 LVTG--LPKTITVTSEEIREA 247
Score = 44.9 bits (107), Expect = 4e-04
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 43/201 (21%)
Query: 2149 LKKIAENAVNNRIFGA---VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 2205
LK A R F +I +P ++++ + AA+ AG + L+ EP +AAI
Sbjct: 80 LKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGA 139
Query: 2206 KLDKNIFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG---DSNL--GGDDFDYCL 2258
LD I + G V D+GGGT DI+ VLS+GG S++ GD FD
Sbjct: 140 GLD--ISQPSGNMVV-DIGGGTTDIA----------VLSLGGIVTSSSIKVAGDKFD--- 183
Query: 2259 FSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFF 2318
I++ +++K YK L+I R +E+ K+ + + ++++
Sbjct: 184 -EAIIR--YIRK-KYK----LLIGERTAEEI-------KIKIGTAFPGAREEEMEIRGRD 228
Query: 2319 TITQHLVNRTILLSSKALMDA 2339
+T + +TI ++S+ + +A
Sbjct: 229 LVTG--LPKTITVTSEEIREA 247
>gnl|CDD|215564 PLN03082, PLN03082, Iron-sulfur cluster assembly; Provisional.
Length = 163
Score = 42.6 bits (100), Expect = 6e-04
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 487 KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLLYFNDNFIQKSK 546
+ LRL V GCSG Y E D+ +D+VF+ +GV++ ++ ++ Y +F++ +
Sbjct: 76 EDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVD--NISY---DFVKGAT 130
Query: 547 ID 548
+D
Sbjct: 131 VD 132
Score = 42.6 bits (100), Expect = 6e-04
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 1883 KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLLYFNDNFIQKSK 1942
+ LRL V GCSG Y E D+ +D+VF+ +GV++ ++ ++ Y +F++ +
Sbjct: 76 EDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVD--NISY---DFVKGAT 130
Query: 1943 ID 1944
+D
Sbjct: 131 VD 132
>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.
Length = 288
Score = 43.8 bits (104), Expect = 7e-04
Identities = 47/180 (26%), Positives = 68/180 (37%), Gaps = 35/180 (19%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTI-------LVSVMLVNNEIG--VIQP--ILEI 158
G + L G + L LE I L+S+ +N G V+ + EI
Sbjct: 95 GAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREI 154
Query: 159 GELCRSKGVIFHCD------AAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGAL---- 208
+ R G+ H D AA A+G I I +Y D +S S K G +G++
Sbjct: 155 RAIAREHGIPLHLDGARLANAAVALGVIVKEITSY-ADSVSMSLSKGLG-APVGSVLAGS 212
Query: 209 --YIRRNPRTRIEAQIHGGGHEYGLR-SGTLATHQIVGMGE-AFRLAR-IEMKEELKRIL 263
+I R R + GG G+R +G LA + + E RL R L L
Sbjct: 213 DDFIAYARRQR---KYLGG----GMRQAGVLAAAGLRALEEGVARLGRDHATARRLAEGL 265
Score = 43.8 bits (104), Expect = 7e-04
Identities = 47/180 (26%), Positives = 68/180 (37%), Gaps = 35/180 (19%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTI-------LVSVMLVNNEIG--VIQP--ILEI 1554
G + L G + L LE I L+S+ +N G V+ + EI
Sbjct: 95 GAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREI 154
Query: 1555 GELCRSKGVIFHCD------AAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGAL---- 1604
+ R G+ H D AA A+G I I +Y D +S S K G +G++
Sbjct: 155 RAIAREHGIPLHLDGARLANAAVALGVIVKEITSY-ADSVSMSLSKGLG-APVGSVLAGS 212
Query: 1605 --YIRRNPRTRIEAQIHGGGHEYGLR-SGTLATHQIVGMGE-AFRLAR-IEMKEELKRIL 1659
+I R R + GG G+R +G LA + + E RL R L L
Sbjct: 213 DDFIAYARRQR---KYLGG----GMRQAGVLAAAGLRALEEGVARLGRDHATARRLAEGL 265
>gnl|CDD|225426 COG2871, NqrF, Na+-transporting NADH:ubiquinone oxidoreductase,
subunit NqrF [Energy production and conversion].
Length = 410
Score = 44.0 bits (104), Expect = 8e-04
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 2510 KKKFITIKPF-YNMNLDEIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVI 2568
K K + + +N D K +G L AL + IFI AC +C C V
Sbjct: 28 KSKLVKVGDITIKINGDPEKT---KTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVR 84
Query: 2569 IREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 2602
+++G EI E ++K +E RLSCQ
Sbjct: 85 VKKGGGEI---LPTELSHISKR-EAKEGWRLSCQ 114
Score = 37.5 bits (87), Expect = 0.087
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 1114 KKKFITIKPF-YNMNLDEIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVI 1172
K K + + +N D K +G L AL + IFI AC +C C V
Sbjct: 28 KSKLVKVGDITIKINGDPEKT---KTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVR 84
Query: 1173 IREGFNEINKANEVEEDMLNKAWGLEENSRLS 1204
+++G EI E ++K +E RLS
Sbjct: 85 VKKGGGEI---LPTELSHISKR-EAKEGWRLS 112
>gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible
chaperonin [Amino acid transport and metabolism].
Length = 277
Score = 43.3 bits (102), Expect = 9e-04
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 753 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 812
LK E + R A +P + + N + AGL VL +L+EPT+AA +LD
Sbjct: 81 LKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD 140
Query: 813 KNIFEGIFAVYDLGGGTFDISILK 836
V D+GGGT ISI+K
Sbjct: 141 DG------GVVDIGGGTTGISIVK 158
Score = 43.3 bits (102), Expect = 9e-04
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 2149 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 2208
LK E + R A +P + + N + AGL VL +L+EPT+AA +LD
Sbjct: 81 LKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD 140
Query: 2209 KNIFEGIFAVYDLGGGTFDISILK 2232
V D+GGGT ISI+K
Sbjct: 141 DG------GVVDIGGGTTGISIVK 158
>gnl|CDD|233915 TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRNA synthase.
Aminoacylation of tRNA(Cys) with Cys, and cysteine
biosynthesis in the process, happens in
Methanocaldococcus jannaschii and several other archaea
by misacylation of tRNA(Cys) with O-phosphoserine (Sep),
followed by modification of the phosphoserine to
cysteine. In some species, direct tRNA-cys
aminoacylation also occurs but this pathway is required
for Cys biosynthesis. Members of this protein catalyze
the second step in this two step pathway, using
pyridoxal phosphate and a sulfur donor to synthesize Cys
from Sep while attached to the tRNA.
Length = 370
Score = 42.9 bits (101), Expect = 0.002
Identities = 23/107 (21%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 102 SIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161
+++++ + G + P+ G + + ++E++ +L + V+ E G + ++ ++
Sbjct: 113 NVKEVPHTGHPEYKVDPEGYGEV-IEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKV 171
Query: 162 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK---IYGPKGI 205
CR KGV + A VG++ ++ + D + S HK GP G+
Sbjct: 172 CREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGV 218
Score = 42.9 bits (101), Expect = 0.002
Identities = 23/107 (21%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 1498 SIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 1557
+++++ + G + P+ G + + ++E++ +L + V+ E G + ++ ++
Sbjct: 113 NVKEVPHTGHPEYKVDPEGYGEV-IEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKV 171
Query: 1558 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK---IYGPKGI 1601
CR KGV + A VG++ ++ + D + S HK GP G+
Sbjct: 172 CREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGV 218
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 42.2 bits (99), Expect = 0.003
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 753 LKKIAENAVNN-----RIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 807
LK+I + A N R V+ P+ ++R+ +A K G + L+ EP +AAI
Sbjct: 81 LKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAI 140
Query: 808 AYKL--DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 865
L D+ + V D+GGGT +++I+ F GV S+ +GGD D + S+
Sbjct: 141 GADLPVDEPVAN---VVVDIGGGTTEVAIISF-GGVVSCHSI----RIGGDQLDEDIVSF 192
Query: 866 IVK 868
+ K
Sbjct: 193 VRK 195
Score = 42.2 bits (99), Expect = 0.003
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 2149 LKKIAENAVNN-----RIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 2203
LK+I + A N R V+ P+ ++R+ +A K G + L+ EP +AAI
Sbjct: 81 LKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAI 140
Query: 2204 AYKL--DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 2261
L D+ + V D+GGGT +++I+ F GV S+ +GGD D + S+
Sbjct: 141 GADLPVDEPVAN---VVVDIGGGTTEVAIISF-GGVVSCHSI----RIGGDQLDEDIVSF 192
Query: 2262 IVK 2264
+ K
Sbjct: 193 VRK 195
>gnl|CDD|130996 TIGR01941, nqrF, NADH:ubiquinone oxidoreductase, Na(+)-translocating,
F subunit. This model represents the NqrF subunit of the
six-protein, Na(+)-pumping NADH-quinone reductase of a
number of marine and pathogenic Gram-negative bacteria.
This oxidoreductase complex functions primarily as a
sodium ion pump [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 405
Score = 41.7 bits (98), Expect = 0.004
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 2510 KKKFITIKPF-YNMNLDEIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVI 2568
K K ++ +N DE K+ +G L + L N IFI AC C C V
Sbjct: 23 KSKLVSSGDITIGINDDEEKS---ITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVR 79
Query: 2569 IREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 2602
+ EG EI E +K +E RLSCQ
Sbjct: 80 VVEGGGEI---LPTELSHFSKR-EAKEGWRLSCQ 109
Score = 35.2 bits (81), Expect = 0.45
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 1114 KKKFITIKPF-YNMNLDEIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVI 1172
K K ++ +N DE K+ +G L + L N IFI AC C C V
Sbjct: 23 KSKLVSSGDITIGINDDEEKS---ITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVR 79
Query: 1173 IREGFNEINKANEVEEDMLNKAWGLEENSRLS 1204
+ EG EI E +K +E RLS
Sbjct: 80 VVEGGGEI---LPTELSHFSKR-EAKEGWRLS 107
>gnl|CDD|235481 PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase
subunit F; Provisional.
Length = 409
Score = 41.8 bits (99), Expect = 0.005
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 2537 SGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEEN 2596
+G L AL N IF+ AC +C C V ++EG +I E ++K +E
Sbjct: 52 AGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGDI---LPTELSHISKR-EAKEG 107
Query: 2597 SRLSCQ 2602
RLSCQ
Sbjct: 108 WRLSCQ 113
Score = 34.5 bits (80), Expect = 0.90
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 1141 SGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEEN 1200
+G L AL N IF+ AC +C C V ++EG +I E ++K +E
Sbjct: 52 AGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGDI---LPTELSHISKR-EAKEG 107
Query: 1201 SRLS 1204
RLS
Sbjct: 108 WRLS 111
>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
Length = 166
Score = 39.9 bits (93), Expect = 0.006
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 544 KSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNT-KLNLNFSHDFLEQQMK 602
K+ +++ ++ +++ LN AYS LKD R+ Y+ L I+LN K S L
Sbjct: 38 KTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNINLNDEKTRSLLSPLELSIFWD 97
Query: 603 WRETLSIIKNKKDKVKFMALLQISEPDDIS 632
E + D K ++ ++I
Sbjct: 98 EMERIENTILFSDLEKIKNKYELMYKNEID 127
Score = 39.9 bits (93), Expect = 0.006
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 1940 KSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNT-KLNLNFSHDFLEQQMK 1998
K+ +++ ++ +++ LN AYS LKD R+ Y+ L I+LN K S L
Sbjct: 38 KTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNINLNDEKTRSLLSPLELSIFWD 97
Query: 1999 WRETLSIIKNKKDKVKFMALLQISEPDDIS 2028
E + D K ++ ++I
Sbjct: 98 EMERIENTILFSDLEKIKNKYELMYKNEID 127
>gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase.
Length = 805
Score = 41.8 bits (98), Expect = 0.006
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 37/234 (15%)
Query: 25 FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWTSGATESNNLAIKGAAHFY 82
+GNP S++ +++ IE AR +V + A P + ++TSGAT + L + G +
Sbjct: 63 YGNPHSQSDSSMRSSD-TIESARQQVLEYFNAPPSDYACVFTSGATAA--LKLVGETFPW 119
Query: 83 KKRGKHIITVQTEHKSVLDSIRK--LENDG------FRVTYLKPKNNGL---ITLSQLEE 131
T++ H SVL IR+ LE +P N+ + L+
Sbjct: 120 SSESHFCYTLEN-HNSVL-GIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQR 177
Query: 132 KICS---------DTI-LVSVMLVNNEIGVIQPILEIGELCRSKGVIFH--------CDA 173
+ S + L + N G P+ + + ++ F DA
Sbjct: 178 RNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDA 237
Query: 174 AQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGG 226
A+ G ++ Y D + S +KI+G P G+GAL +RR+ ++ + GGG
Sbjct: 238 AKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGG 291
Score = 41.8 bits (98), Expect = 0.006
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 37/234 (15%)
Query: 1421 FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWTSGATESNNLAIKGAAHFY 1478
+GNP S++ +++ IE AR +V + A P + ++TSGAT + L + G +
Sbjct: 63 YGNPHSQSDSSMRSSD-TIESARQQVLEYFNAPPSDYACVFTSGATAA--LKLVGETFPW 119
Query: 1479 KKRGKHIITVQTEHKSVLDSIRK--LENDG------FRVTYLKPKNNGL---ITLSQLEE 1527
T++ H SVL IR+ LE +P N+ + L+
Sbjct: 120 SSESHFCYTLEN-HNSVL-GIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQR 177
Query: 1528 KICS---------DTI-LVSVMLVNNEIGVIQPILEIGELCRSKGVIFH--------CDA 1569
+ S + L + N G P+ + + ++ F DA
Sbjct: 178 RNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDA 237
Query: 1570 AQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGG 1622
A+ G ++ Y D + S +KI+G P G+GAL +RR+ ++ + GGG
Sbjct: 238 AKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGG 291
>gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated.
Length = 447
Score = 41.3 bits (98), Expect = 0.006
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 79 AHFYKKRGKHII--TVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD 136
A KR K ++ V E++ VL + L+ G V + P +G+ L LE + D
Sbjct: 148 AVRITKRKKVLVSGAVHPEYREVLKTY--LKGQGIEVVEV-PYEDGVTDLEALEAAVDDD 204
Query: 137 TILVSVMLVN-NEIGVIQPILEIGELCRSKGVIF 169
T +V++ N GVI+ + EI E+ + G +F
Sbjct: 205 T--AAVVVQYPNFFGVIEDLEEIAEIAHAGGALF 236
Score = 41.3 bits (98), Expect = 0.006
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 1475 AHFYKKRGKHII--TVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD 1532
A KR K ++ V E++ VL + L+ G V + P +G+ L LE + D
Sbjct: 148 AVRITKRKKVLVSGAVHPEYREVLKTY--LKGQGIEVVEV-PYEDGVTDLEALEAAVDDD 204
Query: 1533 TILVSVMLVN-NEIGVIQPILEIGELCRSKGVIF 1565
T +V++ N GVI+ + EI E+ + G +F
Sbjct: 205 T--AAVVVQYPNFFGVIEDLEEIAEIAHAGGALF 236
>gnl|CDD|224028 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent
enzymes [General function prediction only].
Length = 382
Score = 39.4 bits (92), Expect = 0.026
Identities = 28/152 (18%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS-------IRKLENDGFRVTYL 116
T+GA E+ + H K G ++ H + + + ++ N G+ +
Sbjct: 82 TAGAREAKFAVM----HALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKI 137
Query: 117 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
P+ + +++++ L + V+ E G + ++ ++CR GV + A
Sbjct: 138 TPEGYAE-VIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYT 196
Query: 177 VGKIDINIQNYKVDLMSFSAHKIY---GPKGI 205
VG++ ++ + D + S HK P G+
Sbjct: 197 VGRMPVSGKEIGADFIVGSGHKSMAASAPIGV 228
Score = 39.4 bits (92), Expect = 0.026
Identities = 28/152 (18%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS-------IRKLENDGFRVTYL 1512
T+GA E+ + H K G ++ H + + + ++ N G+ +
Sbjct: 82 TAGAREAKFAVM----HALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKI 137
Query: 1513 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 1572
P+ + +++++ L + V+ E G + ++ ++CR GV + A
Sbjct: 138 TPEGYAE-VIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYT 196
Query: 1573 VGKIDINIQNYKVDLMSFSAHKIY---GPKGI 1601
VG++ ++ + D + S HK P G+
Sbjct: 197 VGRMPVSGKEIGADFIVGSGHKSMAASAPIGV 228
>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and
beta-subunits. This family consists of Glycine cleavage
system P-proteins EC:1.4.4.2 from bacterial, mammalian
and plant sources. The P protein is part of the glycine
decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also
annotated as glycine cleavage system or glycine
synthase. GDC consists of four proteins P, H, L and T.
The reaction catalysed by this protein is: Glycine +
lipoylprotein <=> S-aminomethyldihydrolipoylprotein +
CO2. Alpha-beta-type dimers associate to form an
alpha(2)beta(2) tetramer, where the alpha- and
beta-subunits are structurally similar and appear to
have arisen by gene duplication and subsequent
divergence with a loss of one active site. The members
of this CD are widely dispersed among all three forms of
cellular life.
Length = 398
Score = 38.8 bits (91), Expect = 0.033
Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 56/198 (28%)
Query: 78 AAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFRVTYLKPKNNGLITLSQLEEKICSD 136
A Y KR K ++ + H + R + E G V + G + L L+E++ +
Sbjct: 101 AIRAYHKRNK-VLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEE 159
Query: 137 TILVSVMLVN-NEIGVI-QPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ------NYK 188
++M+ N +GV I EI ++ S G + + D ++N+ Y
Sbjct: 160 V--AALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDGD------NLNLTGLKPPGEYG 211
Query: 189 VDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ-------- 240
D++ + K P HGGG G +G A +
Sbjct: 212 ADIVVGNLQKTGVP--------------------HGGG---GPGAGFFAVKKELVRFLPG 248
Query: 241 -IVGMGE------AFRLA 251
+VG+ + AFRLA
Sbjct: 249 RLVGVTKDAEGNRAFRLA 266
Score = 38.8 bits (91), Expect = 0.033
Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 56/198 (28%)
Query: 1474 AAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFRVTYLKPKNNGLITLSQLEEKICSD 1532
A Y KR K ++ + H + R + E G V + G + L L+E++ +
Sbjct: 101 AIRAYHKRNK-VLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEE 159
Query: 1533 TILVSVMLVN-NEIGVI-QPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ------NYK 1584
++M+ N +GV I EI ++ S G + + D ++N+ Y
Sbjct: 160 V--AALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDGD------NLNLTGLKPPGEYG 211
Query: 1585 VDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ-------- 1636
D++ + K P HGGG G +G A +
Sbjct: 212 ADIVVGNLQKTGVP--------------------HGGG---GPGAGFFAVKKELVRFLPG 248
Query: 1637 -IVGMGE------AFRLA 1647
+VG+ + AFRLA
Sbjct: 249 RLVGVTKDAEGNRAFRLA 266
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 37.6 bits (87), Expect = 0.034
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 11/122 (9%)
Query: 732 HIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQR---------- 781
G + ++ + L K A + + I IT P R
Sbjct: 29 TPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLL 88
Query: 782 QFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGV 841
A + G + ++N+ +AA+A L + + V DLG GT I+I++ G
Sbjct: 89 IPLALALEDLGGVPVAVVNDAVAAALAEGLFGKEEDTV-LVVDLGTGTTGIAIVEDGKGG 147
Query: 842 FK 843
Sbjct: 148 VG 149
Score = 37.6 bits (87), Expect = 0.034
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 11/122 (9%)
Query: 2128 HIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQR---------- 2177
G + ++ + L K A + + I IT P R
Sbjct: 29 TPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLL 88
Query: 2178 QFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGV 2237
A + G + ++N+ +AA+A L + + V DLG GT I+I++ G
Sbjct: 89 IPLALALEDLGGVPVAVVNDAVAAALAEGLFGKEEDTV-LVVDLGTGTTGIAIVEDGKGG 147
Query: 2238 FK 2239
Sbjct: 148 VG 149
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 38.6 bits (91), Expect = 0.042
Identities = 65/233 (27%), Positives = 102/233 (43%), Gaps = 68/233 (29%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIV-RYLPDGKIY-VGKKAKITQNID- 696
IGID GT N+LV + I VL + PS+V GK+ VG++AK + +
Sbjct: 11 IGIDLGTANTLVYVKGKGI--VLNE-------PSVVAIDTKTGKVLAVGEEAK--EMLGR 59
Query: 697 -PKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKK 755
P N I +I R LK+ G+ + E + + L+
Sbjct: 60 TPGN-IEAI-----RPLKD-----------------------GVIADFEATEAM---LRY 87
Query: 756 IAENAVNNRIFG---AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 812
+ A R F VI VP+ +++R+ + AA+ AG + L+ EP +AAI L
Sbjct: 88 FIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP 147
Query: 813 KNIFEGIFA-VYDLGGGTFDISILKFKNGVFKVLSVGG--DSN---LGGDDFD 859
+ E + V D+GGGT +++ V+S+GG S + GD+ D
Sbjct: 148 --VTEPVGNMVVDIGGGTTEVA----------VISLGGIVYSESIRVAGDEMD 188
Score = 38.6 bits (91), Expect = 0.042
Identities = 65/233 (27%), Positives = 102/233 (43%), Gaps = 68/233 (29%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIV-RYLPDGKIY-VGKKAKITQNID- 2092
IGID GT N+LV + I VL + PS+V GK+ VG++AK + +
Sbjct: 11 IGIDLGTANTLVYVKGKGI--VLNE-------PSVVAIDTKTGKVLAVGEEAK--EMLGR 59
Query: 2093 -PKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKK 2151
P N I +I R LK+ G+ + E + + L+
Sbjct: 60 TPGN-IEAI-----RPLKD-----------------------GVIADFEATEAM---LRY 87
Query: 2152 IAENAVNNRIFG---AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 2208
+ A R F VI VP+ +++R+ + AA+ AG + L+ EP +AAI L
Sbjct: 88 FIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP 147
Query: 2209 KNIFEGIFA-VYDLGGGTFDISILKFKNGVFKVLSVGG--DSN---LGGDDFD 2255
+ E + V D+GGGT +++ V+S+GG S + GD+ D
Sbjct: 148 --VTEPVGNMVVDIGGGTTEVA----------VISLGGIVYSESIRVAGDEMD 188
>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). TA
catalyzes the conversion of L-threonine or
L-allo-threonine to glycine and acetaldehyde in a
secondary glycine biosynthetic pathway.
Length = 338
Score = 38.1 bits (89), Expect = 0.053
Identities = 44/192 (22%), Positives = 65/192 (33%), Gaps = 38/192 (19%)
Query: 35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK----RGKHII 90
YG + K A+L ++ T +N LA+ HI
Sbjct: 28 YG--EDPTTAKLEARAAELF--GKEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIY 83
Query: 91 TVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD-------TILVSVM 143
T + L ++ L G NG +T LE I LVS +
Sbjct: 84 TDEAGAPEFLSGVKLLPVPG---------ENGKLTPEDLEAAIRPRDDIHFPPPSLVS-L 133
Query: 144 LVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQ---AVGKIDINIQNYK--VDLMSFS 195
E G + P + I L + G+ H D A+ A + + ++ YK VD +SF
Sbjct: 134 ENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFC 193
Query: 196 AHKIYGPKGIGA 207
KG GA
Sbjct: 194 -----LSKGGGA 200
Score = 38.1 bits (89), Expect = 0.053
Identities = 44/192 (22%), Positives = 65/192 (33%), Gaps = 38/192 (19%)
Query: 1431 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK----RGKHII 1486
YG + K A+L ++ T +N LA+ HI
Sbjct: 28 YG--EDPTTAKLEARAAELF--GKEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIY 83
Query: 1487 TVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD-------TILVSVM 1539
T + L ++ L G NG +T LE I LVS +
Sbjct: 84 TDEAGAPEFLSGVKLLPVPG---------ENGKLTPEDLEAAIRPRDDIHFPPPSLVS-L 133
Query: 1540 LVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQ---AVGKIDINIQNYK--VDLMSFS 1591
E G + P + I L + G+ H D A+ A + + ++ YK VD +SF
Sbjct: 134 ENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFC 193
Query: 1592 AHKIYGPKGIGA 1603
KG GA
Sbjct: 194 -----LSKGGGA 200
>gnl|CDD|184076 PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase;
Provisional.
Length = 368
Score = 38.0 bits (89), Expect = 0.057
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 17/162 (10%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGV 167
G L + +++E + +D + V LV+ E G++ P+ EI + + G
Sbjct: 103 GIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGK 162
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHG-- 224
DA + G I I+I +D + SA+K I G G G + RR+ +
Sbjct: 163 RLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLS 222
Query: 225 ----GGHEYGLRSG----TLATHQIVGMGEAFRLARIEMKEE 258
Y ++G T TH + AF A +E++EE
Sbjct: 223 LDLYDQWAYMEKTGQWRFTPPTHVVA----AFYQALLELEEE 260
Score = 38.0 bits (89), Expect = 0.057
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 17/162 (10%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGV 1563
G L + +++E + +D + V LV+ E G++ P+ EI + + G
Sbjct: 103 GIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGK 162
Query: 1564 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHG-- 1620
DA + G I I+I +D + SA+K I G G G + RR+ +
Sbjct: 163 RLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLS 222
Query: 1621 ----GGHEYGLRSG----TLATHQIVGMGEAFRLARIEMKEE 1654
Y ++G T TH + AF A +E++EE
Sbjct: 223 LDLYDQWAYMEKTGQWRFTPPTHVVA----AFYQALLELEEE 260
>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated.
Length = 373
Score = 38.0 bits (89), Expect = 0.062
Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 31/152 (20%)
Query: 35 YGWTAEKAIEKA---RNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKKRGKHI 89
YGW IE + + VA L Y P I+ T+GAT +N L + + G H+
Sbjct: 58 YGW-----IEGSPEFKEAVASL-YQNVKPENILQTNGATGANFLVLYALV----EPGDHV 107
Query: 90 ITV----QTEHKSVLDSIRKLENDGFRVTY--LKPKNNGLITLSQLEEKICSDTILVSVM 143
I+V Q + + +S+ G V Y LK +N L L +L + +T L+ +
Sbjct: 108 ISVYPTYQ-QLYDIPESL------GAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICIN 160
Query: 144 LVNNEIGVI--QPIL-EIGELCRSKGVIFHCD 172
NN G + + L EI E+ RS D
Sbjct: 161 NANNPTGALMDRAYLEEIVEIARSVDAYVLSD 192
Score = 38.0 bits (89), Expect = 0.062
Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 31/152 (20%)
Query: 1431 YGWTAEKAIEKA---RNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKKRGKHI 1485
YGW IE + + VA L Y P I+ T+GAT +N L + + G H+
Sbjct: 58 YGW-----IEGSPEFKEAVASL-YQNVKPENILQTNGATGANFLVLYALV----EPGDHV 107
Query: 1486 ITV----QTEHKSVLDSIRKLENDGFRVTY--LKPKNNGLITLSQLEEKICSDTILVSVM 1539
I+V Q + + +S+ G V Y LK +N L L +L + +T L+ +
Sbjct: 108 ISVYPTYQ-QLYDIPESL------GAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICIN 160
Query: 1540 LVNNEIGVI--QPIL-EIGELCRSKGVIFHCD 1568
NN G + + L EI E+ RS D
Sbjct: 161 NANNPTGALMDRAYLEEIVEIARSVDAYVLSD 192
>gnl|CDD|235292 PRK04366, PRK04366, glycine dehydrogenase subunit 2; Validated.
Length = 481
Score = 38.2 bits (90), Expect = 0.066
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 16/106 (15%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVN-NEIGVIQP-ILEIGELCRSKGV 167
GF+V + +GL+ L L+ + DT ++ML N N +G+ + ILEI E+ G
Sbjct: 182 GFKVVEIPSNEDGLVDLEALKAAVGEDT--AALMLTNPNTLGLFERNILEIAEIVHEAGG 239
Query: 168 IFHCDAAQA---VGKI---DINIQNYKVDLMSFSAHKIYG-PKGIG 206
+ + D A +GK D+ D++ + HK + P G G
Sbjct: 240 LLYYDGANLNAILGKARPGDMG-----FDVVHLNLHKTFSTPHGGG 280
Score = 38.2 bits (90), Expect = 0.066
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 16/106 (15%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVN-NEIGVIQP-ILEIGELCRSKGV 1563
GF+V + +GL+ L L+ + DT ++ML N N +G+ + ILEI E+ G
Sbjct: 182 GFKVVEIPSNEDGLVDLEALKAAVGEDT--AALMLTNPNTLGLFERNILEIAEIVHEAGG 239
Query: 1564 IFHCDAAQA---VGKI---DINIQNYKVDLMSFSAHKIYG-PKGIG 1602
+ + D A +GK D+ D++ + HK + P G G
Sbjct: 240 LLYYDGANLNAILGKARPGDMG-----FDVVHLNLHKTFSTPHGGG 280
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 37.5 bits (88), Expect = 0.089
Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 33/117 (28%)
Query: 730 MLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDI-----QRQ-- 782
MLHIK AE + I AVI P F + RQ
Sbjct: 134 MLHIKQQ--------------------AEAQLQAAITQAVIGRPVNFQGLGGEEANRQAE 173
Query: 783 -FTKNAAKLAGLNVLRLLNEPTSAAIAY--KLDKNIFEGIFAVYDLGGGTFDISILK 836
+ AAK AG + EP +A + + L + E V D+GGGT D S+L
Sbjct: 174 GILERAAKRAGFKDVEFQFEPVAAGLDFEATLTE---EKRVLVVDIGGGTTDCSMLL 227
Score = 37.5 bits (88), Expect = 0.089
Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 33/117 (28%)
Query: 2126 MLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDI-----QRQ-- 2178
MLHIK AE + I AVI P F + RQ
Sbjct: 134 MLHIKQQ--------------------AEAQLQAAITQAVIGRPVNFQGLGGEEANRQAE 173
Query: 2179 -FTKNAAKLAGLNVLRLLNEPTSAAIAY--KLDKNIFEGIFAVYDLGGGTFDISILK 2232
+ AAK AG + EP +A + + L + E V D+GGGT D S+L
Sbjct: 174 GILERAAKRAGFKDVEFQFEPVAAGLDFEATLTE---EKRVLVVDIGGGTTDCSMLL 227
Score = 32.1 bits (74), Expect = 3.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD 680
IG D+GT N VA++R+ P +L + +PS + P
Sbjct: 3 IGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTL-CAPT 42
Score = 32.1 bits (74), Expect = 3.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD 2076
IG D+GT N VA++R+ P +L + +PS + P
Sbjct: 3 IGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTL-CAPT 42
>gnl|CDD|227178 COG4841, COG4841, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 95
Score = 34.0 bits (78), Expect = 0.15
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 470 VTKKAAK-YINKYIQKRGKGIGLRLGVYNRGCSGLS--YKLEYVDEKRKEDQVF-KLNGV 525
VT +A K + + + G + R V GCS L + L E KE + +G+
Sbjct: 5 VTDQALKWFKEELDLEEGNKV--RFFVRYGGCSSLQQGFSLGVAKEVPKEIGYKQEYDGL 62
Query: 526 QIFINEKDLLYFND 539
FI EKDL YF+D
Sbjct: 63 TFFIEEKDLWYFDD 76
Score = 34.0 bits (78), Expect = 0.15
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 1866 VTKKAAK-YINKYIQKRGKGIGLRLGVYNRGCSGLS--YKLEYVDEKRKEDQVF-KLNGV 1921
VT +A K + + + G + R V GCS L + L E KE + +G+
Sbjct: 5 VTDQALKWFKEELDLEEGNKV--RFFVRYGGCSSLQQGFSLGVAKEVPKEIGYKQEYDGL 62
Query: 1922 QIFINEKDLLYFND 1935
FI EKDL YF+D
Sbjct: 63 TFFIEEKDLWYFDD 76
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 36.1 bits (84), Expect = 0.20
Identities = 43/255 (16%), Positives = 82/255 (32%), Gaps = 35/255 (13%)
Query: 45 KARNEVAQLIYADP-------REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHK 97
+ R +A+ + P +++ SGA N A+ I+ +
Sbjct: 45 ELREALAKFLGRSPVLKLDREAAVVFGSGAGA-NIEALIFLLRLNPGDA--ILVPAPTYP 101
Query: 98 SVLDSIRKLENDGFRVTY-LKPKNNGLITLSQLEEKICSDTILVSVMLVN---NEIGVIQ 153
S + R G V Y L N+ + LE + T V+L N G +
Sbjct: 102 SYIRIFRL--AGGEVVRYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVA 159
Query: 154 P---ILEIGELCRSKGVIFHCDAAQAVG--------KIDINIQNYKVDLMSFSAHKIYGP 202
+ ++ +L + ++ D A A + L+ S K +G
Sbjct: 160 TLEELEKLLDLAKEHNILLLVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFGL 219
Query: 203 KG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELK 260
G +G + +++ ++ + S T L E++E +
Sbjct: 220 AGWRVGYILGNAAVISQL-RKLARPFY-----SSTHLQAAAAAALSDPLLVASELEEMRQ 273
Query: 261 RILFLQKRLYNGLME 275
RI + L +GL
Sbjct: 274 RIKERRDYLRDGLEA 288
Score = 36.1 bits (84), Expect = 0.20
Identities = 43/255 (16%), Positives = 82/255 (32%), Gaps = 35/255 (13%)
Query: 1441 KARNEVAQLIYADP-------REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHK 1493
+ R +A+ + P +++ SGA N A+ I+ +
Sbjct: 45 ELREALAKFLGRSPVLKLDREAAVVFGSGAGA-NIEALIFLLRLNPGDA--ILVPAPTYP 101
Query: 1494 SVLDSIRKLENDGFRVTY-LKPKNNGLITLSQLEEKICSDTILVSVMLVN---NEIGVIQ 1549
S + R G V Y L N+ + LE + T V+L N G +
Sbjct: 102 SYIRIFRL--AGGEVVRYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVA 159
Query: 1550 P---ILEIGELCRSKGVIFHCDAAQAVG--------KIDINIQNYKVDLMSFSAHKIYGP 1598
+ ++ +L + ++ D A A + L+ S K +G
Sbjct: 160 TLEELEKLLDLAKEHNILLLVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFGL 219
Query: 1599 KG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELK 1656
G +G + +++ ++ + S T L E++E +
Sbjct: 220 AGWRVGYILGNAAVISQL-RKLARPFY-----SSTHLQAAAAAALSDPLLVASELEEMRQ 273
Query: 1657 RILFLQKRLYNGLME 1671
RI + L +GL
Sbjct: 274 RIKERRDYLRDGLEA 288
>gnl|CDD|99745 cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase. This family belongs
to the pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Cys-tRNA(Cys) is
produced by O-phosphoseryl-tRNA synthetase which ligates
O-phosphoserine (Sep) to tRNA(Cys), and
Sep-tRNA:Cys-tRNA synthase (SepCysS) converts
Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea.
SepCysS forms a dimer, each monomer is composed of a
large and small domain; the larger, a typical pyridoxal
5'-phosphate (PLP)-dependent-like enzyme fold. In the
active site of each monomer, PLP is covalently bound to
a conserved Lys residue near the dimer interface.
Length = 361
Score = 36.2 bits (84), Expect = 0.21
Identities = 48/251 (19%), Positives = 91/251 (36%), Gaps = 34/251 (13%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS-------IRKLENDGFRVTYL 116
T GA E H ++G ++ H + + +R++ N G ++
Sbjct: 65 TPGARE----GKFAVMHSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHI 120
Query: 117 KPKNNGLITLSQLEEKICSDTILVSVML---VNNEIGVIQPILEIGELCRSKGVIFHCDA 173
P+ +EE ++ L V+ G + +I ++C GV +
Sbjct: 121 TPEG----YAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNG 176
Query: 174 AQAVGKIDINIQNYKVDLMSFSAHKIY---GPKGIGALYIRRNPRTRIEAQIHGGGHEYG 230
A VG++ ++ + D + S HK P G+ A +Q+ E
Sbjct: 177 AYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMF-KIKEVE 235
Query: 231 LRSGTLATHQIVGMGEAFR--LARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMN 287
L TL +V + +F R++ EE+++ + +E IE I G+
Sbjct: 236 LLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAE-----LEKIEGIKQLGEK- 289
Query: 288 NRIPHNLNISF 298
P N ++ F
Sbjct: 290 ---PKNHDLMF 297
Score = 36.2 bits (84), Expect = 0.21
Identities = 48/251 (19%), Positives = 91/251 (36%), Gaps = 34/251 (13%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS-------IRKLENDGFRVTYL 1512
T GA E H ++G ++ H + + +R++ N G ++
Sbjct: 65 TPGARE----GKFAVMHSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHI 120
Query: 1513 KPKNNGLITLSQLEEKICSDTILVSVML---VNNEIGVIQPILEIGELCRSKGVIFHCDA 1569
P+ +EE ++ L V+ G + +I ++C GV +
Sbjct: 121 TPEG----YAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNG 176
Query: 1570 AQAVGKIDINIQNYKVDLMSFSAHKIY---GPKGIGALYIRRNPRTRIEAQIHGGGHEYG 1626
A VG++ ++ + D + S HK P G+ A +Q+ E
Sbjct: 177 AYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMF-KIKEVE 235
Query: 1627 LRSGTLATHQIVGMGEAFR--LARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMN 1683
L TL +V + +F R++ EE+++ + +E IE I G+
Sbjct: 236 LLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAE-----LEKIEGIKQLGEK- 289
Query: 1684 NRIPHNLNISF 1694
P N ++ F
Sbjct: 290 ---PKNHDLMF 297
>gnl|CDD|131379 TIGR02326, transamin_PhnW, 2-aminoethylphosphonate--pyruvate
transaminase. Members of this family are
2-aminoethylphosphonate--pyruvate transaminase. This
enzyme acts on the most common type of naturally
occurring phosphonate. It interconverts
2-aminoethylphosphonate plus pyruvate with
2-phosphonoacetaldehyde plus alanine. The enzyme
phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually
encoded by an adjacent gene, then cleaves the C-P bond
of phosphonoacetaldehyde, adding water to yield
acetaldehyde plus inorganic phosphate. Species with this
pathway generally have an identified phosphonate ABC
transporter but do not also have the multisubunit C-P
lysase complex as found in Escherichia coli [Central
intermediary metabolism, Phosphorus compounds].
Length = 363
Score = 36.3 bits (84), Expect = 0.21
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 125 TLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 182
+ ++E + +D + + LV+ E G++ PI + +L G + DA + G I I
Sbjct: 116 DVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPI 175
Query: 183 NIQNYKVDLMSFSAHK-IYGPKGIGALYIRR 212
+I +D + SA+K I G G G + R+
Sbjct: 176 DIAELHIDYLISSANKCIQGVPGFGFVIARQ 206
Score = 36.3 bits (84), Expect = 0.21
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 1521 TLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
+ ++E + +D + + LV+ E G++ PI + +L G + DA + G I I
Sbjct: 116 DVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPI 175
Query: 1579 NIQNYKVDLMSFSAHK-IYGPKGIGALYIRR 1608
+I +D + SA+K I G G G + R+
Sbjct: 176 DIAELHIDYLISSANKCIQGVPGFGFVIARQ 206
>gnl|CDD|226363 COG3844, COG3844, Kynureninase [Amino acid transport and
metabolism].
Length = 407
Score = 35.9 bits (83), Expect = 0.29
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 21/186 (11%)
Query: 48 NEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS------VLD 101
+++A LI A E++ T T S NL AA + G+ +I +E + + +
Sbjct: 83 DKLAPLIGARAGEVVVTD--TTSINLFKVLAAALRPQEGRRVIV--SEGDNFPTDLYIAE 138
Query: 102 SIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161
+ L G+ + G+I LEE I D +V + VN + G + + I L
Sbjct: 139 GLADLLGIGYDLE-------GVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITAL 191
Query: 162 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY---GPKGIGALYIRRNPRTRI 218
G + D A + G + +++ D ++K Y GP L++ R R
Sbjct: 192 AHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYK-YLNGGPGAPAGLFVAPRHRERS 250
Query: 219 EAQIHG 224
+ G
Sbjct: 251 WPPLSG 256
Score = 35.9 bits (83), Expect = 0.29
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 21/186 (11%)
Query: 1444 NEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS------VLD 1497
+++A LI A E++ T T S NL AA + G+ +I +E + + +
Sbjct: 83 DKLAPLIGARAGEVVVTD--TTSINLFKVLAAALRPQEGRRVIV--SEGDNFPTDLYIAE 138
Query: 1498 SIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 1557
+ L G+ + G+I LEE I D +V + VN + G + + I L
Sbjct: 139 GLADLLGIGYDLE-------GVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITAL 191
Query: 1558 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY---GPKGIGALYIRRNPRTRI 1614
G + D A + G + +++ D ++K Y GP L++ R R
Sbjct: 192 AHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYK-YLNGGPGAPAGLFVAPRHRERS 250
Query: 1615 EAQIHG 1620
+ G
Sbjct: 251 WPPLSG 256
>gnl|CDD|184186 PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA;
Provisional.
Length = 115
Score = 33.4 bits (77), Expect = 0.37
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 471 TKKAAKYINKYIQKRGKG-IGLRLGVYNRGCSGLSYKLEYVDEKRKEDQ-VFKLNGVQIF 528
T AA + + I++ G + LR+ + GCSG Y + DE+ ED + GV +
Sbjct: 13 TDAAAAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTF-DEQVNEDDTTIEKQGVTLV 71
Query: 529 INEKDLLY 536
++ L Y
Sbjct: 72 VDPMSLQY 79
Score = 33.4 bits (77), Expect = 0.37
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 1867 TKKAAKYINKYIQKRGKG-IGLRLGVYNRGCSGLSYKLEYVDEKRKEDQ-VFKLNGVQIF 1924
T AA + + I++ G + LR+ + GCSG Y + DE+ ED + GV +
Sbjct: 13 TDAAAAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTF-DEQVNEDDTTIEKQGVTLV 71
Query: 1925 INEKDLLY 1932
++ L Y
Sbjct: 72 VDPMSLQY 79
>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional.
Length = 460
Score = 35.4 bits (82), Expect = 0.39
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 34 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ 93
++ + AIE A +A L D + +T+G +E+ A K A ++K GK
Sbjct: 89 LWSYAHPPAIELA-ERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKP----- 142
Query: 94 TEHK 97
+HK
Sbjct: 143 GKHK 146
Score = 35.4 bits (82), Expect = 0.39
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 1430 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ 1489
++ + AIE A +A L D + +T+G +E+ A K A ++K GK
Sbjct: 89 LWSYAHPPAIELA-ERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKP----- 142
Query: 1490 TEHK 1493
+HK
Sbjct: 143 GKHK 146
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and
chromosome partitioning].
Length = 418
Score = 35.3 bits (82), Expect = 0.45
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 12/86 (13%)
Query: 769 VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE-GIFAVYDLGG 827
VIT P +I K + AGL V ++ EP ++A+A L ++ E G+ A+ D+GG
Sbjct: 159 VITGPK---NILENLEK-CVERAGLKVDNIVLEPLASALA-VLTEDEKELGV-ALIDIGG 212
Query: 828 GTFDISILKFKNGVF---KVLSVGGD 850
GT DI+I +KNG V+ VGGD
Sbjct: 213 GTTDIAI--YKNGALRYTGVIPVGGD 236
Score = 35.3 bits (82), Expect = 0.45
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 12/86 (13%)
Query: 2165 VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE-GIFAVYDLGG 2223
VIT P +I K + AGL V ++ EP ++A+A L ++ E G+ A+ D+GG
Sbjct: 159 VITGPK---NILENLEK-CVERAGLKVDNIVLEPLASALA-VLTEDEKELGV-ALIDIGG 212
Query: 2224 GTFDISILKFKNGVF---KVLSVGGD 2246
GT DI+I +KNG V+ VGGD
Sbjct: 213 GTTDIAI--YKNGALRYTGVIPVGGD 236
>gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 34.3 bits (80), Expect = 0.82
Identities = 71/245 (28%), Positives = 108/245 (44%), Gaps = 73/245 (29%)
Query: 640 IGIDFGTTNSLVAIVRN-NIPEVLKDKYGYFLIPSIVRYLPD-GKIY-VGKKAKITQNID 696
+GID GT N+LV V+ I VL + PS+V D K+ VG++AK
Sbjct: 8 LGIDLGTANTLV-YVKGKGI--VLNE-------PSVVAIRTDTKKVLAVGEEAKQMLGRT 57
Query: 697 PKNTISSIKRFIARDLKN--INTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLK 754
P N I +I R +K+ I DF ML + FI K
Sbjct: 58 PGN-IVAI-----RPMKDGVIA------DFDVTEKML----------------KYFI--K 87
Query: 755 KIAENAVNNRIFGA---VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 811
K V+ + VI VP+ +++R+ + +A AG + L+ EP +AAI L
Sbjct: 88 K-----VHKNFRPSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGL 142
Query: 812 DKNIFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG----DS-NLGGDDFDYCLFS 864
+ E G V D+GGGT +++ V+S+GG S +GGD FD + +
Sbjct: 143 P--VTEPTGSMVV-DIGGGTTEVA----------VISLGGIVYSKSVRVGGDKFDEAIIN 189
Query: 865 WIVKN 869
++ +N
Sbjct: 190 YVRRN 194
Score = 34.3 bits (80), Expect = 0.82
Identities = 71/245 (28%), Positives = 108/245 (44%), Gaps = 73/245 (29%)
Query: 2036 IGIDFGTTNSLVAIVRN-NIPEVLKDKYGYFLIPSIVRYLPD-GKIY-VGKKAKITQNID 2092
+GID GT N+LV V+ I VL + PS+V D K+ VG++AK
Sbjct: 8 LGIDLGTANTLV-YVKGKGI--VLNE-------PSVVAIRTDTKKVLAVGEEAKQMLGRT 57
Query: 2093 PKNTISSIKRFIARDLKN--INTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLK 2150
P N I +I R +K+ I DF ML + FI K
Sbjct: 58 PGN-IVAI-----RPMKDGVIA------DFDVTEKML----------------KYFI--K 87
Query: 2151 KIAENAVNNRIFGA---VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 2207
K V+ + VI VP+ +++R+ + +A AG + L+ EP +AAI L
Sbjct: 88 K-----VHKNFRPSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGL 142
Query: 2208 DKNIFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG----DS-NLGGDDFDYCLFS 2260
+ E G V D+GGGT +++ V+S+GG S +GGD FD + +
Sbjct: 143 P--VTEPTGSMVV-DIGGGTTEVA----------VISLGGIVYSKSVRVGGDKFDEAIIN 189
Query: 2261 WIVKN 2265
++ +N
Sbjct: 190 YVRRN 194
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 33.9 bits (78), Expect = 1.2
Identities = 43/178 (24%), Positives = 62/178 (34%), Gaps = 36/178 (20%)
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD------------SIRKL-EN 108
+ G++ESN LA+ A R K I ++ K L SI K
Sbjct: 107 VLQGGSSESNLLALLAA------RTKWIRRMKAAGKPSLGKLVAYTSDQAHSSIEKAALI 160
Query: 109 DGFRVTYLKPKNNGLITLSQLEEKICSD-----TIL-VSVMLVNNEIGVIQPILEIGELC 162
G + + NG + LE+ I D V L G P+ E+G++C
Sbjct: 161 AGVELREIPTDENGKMRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDIC 220
Query: 163 RSKGVIFHCDAAQAVGKI--------DINIQNYKVDLMSFSAHKIYG-PKGIGALYIR 211
+ H DAA A I+ D SF+ HK AL++R
Sbjct: 221 NKYDLWLHVDAAYAGSAFICPEFRHWLFGIER--ADSFSFNPHKWMLVLLDCSALWVR 276
Score = 33.9 bits (78), Expect = 1.2
Identities = 43/178 (24%), Positives = 62/178 (34%), Gaps = 36/178 (20%)
Query: 1458 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD------------SIRKL-EN 1504
+ G++ESN LA+ A R K I ++ K L SI K
Sbjct: 107 VLQGGSSESNLLALLAA------RTKWIRRMKAAGKPSLGKLVAYTSDQAHSSIEKAALI 160
Query: 1505 DGFRVTYLKPKNNGLITLSQLEEKICSD-----TIL-VSVMLVNNEIGVIQPILEIGELC 1558
G + + NG + LE+ I D V L G P+ E+G++C
Sbjct: 161 AGVELREIPTDENGKMRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDIC 220
Query: 1559 RSKGVIFHCDAAQAVGKI--------DINIQNYKVDLMSFSAHKIYG-PKGIGALYIR 1607
+ H DAA A I+ D SF+ HK AL++R
Sbjct: 221 NKYDLWLHVDAAYAGSAFICPEFRHWLFGIER--ADSFSFNPHKWMLVLLDCSALWVR 276
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme, Pyridoxal-dependent)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 522
Score = 33.9 bits (78), Expect = 1.3
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 17/107 (15%)
Query: 148 EIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYK--------VDLMSFSAHK- 198
E G I P+ E+ ++ + G FH DAA G + Y+ D ++ AHK
Sbjct: 277 ETGNIDPLDEMADIAQELGCHFHVDAAW--GGATLLSNTYRHLLKGIERADSVTIDAHKQ 334
Query: 199 IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT--LATHQIVG 243
+Y P G G + + ++P + H EY LR G+ L +H + G
Sbjct: 335 LYVPMGAG-MVLFKDPALMSAIEHHA---EYILRKGSKDLGSHTLEG 377
Score = 33.9 bits (78), Expect = 1.3
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 17/107 (15%)
Query: 1544 EIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYK--------VDLMSFSAHK- 1594
E G I P+ E+ ++ + G FH DAA G + Y+ D ++ AHK
Sbjct: 277 ETGNIDPLDEMADIAQELGCHFHVDAAW--GGATLLSNTYRHLLKGIERADSVTIDAHKQ 334
Query: 1595 IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT--LATHQIVG 1639
+Y P G G + + ++P + H EY LR G+ L +H + G
Sbjct: 335 LYVPMGAG-MVLFKDPALMSAIEHHA---EYILRKGSKDLGSHTLEG 377
>gnl|CDD|173854 cd08489, PBP2_NikA, The substrate-binding component of an ABC-type
nickel import system contains the type 2 periplasmic
binding fold. This family represents the periplasmic
substrate-binding domain of nickel transport system,
which functions in the import of nickel and in the
control of chemotactic response away from nickel. The
ATP-binding cassette (ABC) type nickel transport system
is comprised of five subunits NikABCDE: the two
pore-forming integral inner membrane proteins NikB and
NikC; the two inner membrane-associated proteins with
ATPase activity NikD and NikE; and the periplasmic nickel
binding NikA, the initial nickel receptor. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA. The DppA binds dipeptides and some
tripeptides and is involved in chemotaxis toward
dipeptides, whereas the OppA binds peptides of a wide
range of lengths (2-35 amino acid residues) and plays a
role in recycling of cell wall peptides, which precludes
any involvement in chemotaxis. Most of other periplasmic
binding proteins are comprised of only two globular
subdomains corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport proteins,
the PBP2 superfamily includes the ligand-binding domains
from ionotropic glutamate receptors, LysR-type
transcriptional regulators, and unorthodox sensor
proteins involved in signal transduction.
Length = 488
Score = 33.4 bits (77), Expect = 1.9
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 1214 TRIMRELRVAINFGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIE 1273
TR + A+N + P +++K+R AI A+D I ++K + N+ Y +
Sbjct: 242 TRFL-----ALNTASEPLSDLKVREAINYAIDKEAISKGILYGLEKPADTLFAPNVPYAD 296
Query: 1274 VRYEGYSVN 1282
+ + YS +
Sbjct: 297 IDLKPYSYD 305
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 33.1 bits (76), Expect = 2.0
Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 26/178 (14%)
Query: 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL------IYADPREI 61
P P V++ + + Y + + R +A+ + P EI
Sbjct: 11 PPPPEVLEALA------AAALRAGLLGYYPDP--GLPELREAIAEWLGRRGGVDVPPEEI 62
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTY--LKPK 119
+ T+GA E A+ G ++ + + R G V L +
Sbjct: 63 VVTNGAQE----ALSLLLRALLNPGDEVLVPDPTYPGYEAAARLA---GAEVVPVPLDEE 115
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAA 174
L+ L LE T L+ + NN G + + E+ EL + G++ D A
Sbjct: 116 GGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEA 173
Score = 33.1 bits (76), Expect = 2.0
Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 26/178 (14%)
Query: 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL------IYADPREI 1457
P P V++ + + Y + + R +A+ + P EI
Sbjct: 11 PPPPEVLEALA------AAALRAGLLGYYPDP--GLPELREAIAEWLGRRGGVDVPPEEI 62
Query: 1458 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTY--LKPK 1515
+ T+GA E A+ G ++ + + R G V L +
Sbjct: 63 VVTNGAQE----ALSLLLRALLNPGDEVLVPDPTYPGYEAAARLA---GAEVVPVPLDEE 115
Query: 1516 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAA 1570
L+ L LE T L+ + NN G + + E+ EL + G++ D A
Sbjct: 116 GGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEA 173
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in Prosite
are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 29.8 bits (68), Expect = 2.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 548 DQDASVKLSTYLNKAYSILKDPFLRSIYL 576
A+ + +N+AY +L DP R+IY
Sbjct: 35 GDPAAEEKFKEINEAYEVLSDPEKRAIYD 63
Score = 29.8 bits (68), Expect = 2.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 1944 DQDASVKLSTYLNKAYSILKDPFLRSIYL 1972
A+ + +N+AY +L DP R+IY
Sbjct: 35 GDPAAEEKFKEINEAYEVLSDPEKRAIYD 63
>gnl|CDD|201133 pfam00289, CPSase_L_chain, Carbamoyl-phosphate synthase L chain,
N-terminal domain. Carbamoyl-phosphate synthase
catalyzes the ATP-dependent synthesis of
carbamyl-phosphate from glutamine or ammonia and
bicarbonate. This important enzyme initiates both the
urea cycle and the biosynthesis of arginine and/or
pyrimidines. The carbamoyl-phosphate synthase (CPS)
enzyme in prokaryotes is a heterodimer of a small and
large chain. The small chain promotes the hydrolysis of
glutamine to ammonia, which is used by the large chain to
synthesise carbamoyl phosphate. See pfam00988. The small
chain has a GATase domain in the carboxyl terminus. See
pfam00117.
Length = 108
Score = 30.9 bits (71), Expect = 2.0
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 8/33 (24%)
Query: 1207 AKRGKICTRIMRELR------VAINFGNNPDTN 1233
A RG+I RI+R LR VA+N +NPDT
Sbjct: 7 ANRGEIAVRIIRALRELGIETVAVN--SNPDTV 37
>gnl|CDD|226410 COG3894, COG3894, Uncharacterized metal-binding protein [General
function prediction only].
Length = 614
Score = 33.2 bits (76), Expect = 2.2
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 2535 ENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 2594
E+ G ++ DA + ++I C C C V+++EG ++I + + E+ + E
Sbjct: 14 EDEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDHEK------YLRE 67
Query: 2595 ENSRLSCQ 2602
RL+CQ
Sbjct: 68 RGYRLACQ 75
>gnl|CDD|219548 pfam07743, HSCB_C, HSCB C-terminal oligomerisation domain. This
domain is the HSCB C-terminal oligomerisation domain and
is found on co-chaperone proteins.
Length = 78
Score = 30.3 bits (69), Expect = 2.4
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 595 DFLEQQMKWRETLSIIKNKKDKVKFMALLQ 624
+FL +QM+ RE L + D+ L +
Sbjct: 5 EFLMEQMELREALEEARASDDEEALDELKK 34
Score = 30.3 bits (69), Expect = 2.4
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 1991 DFLEQQMKWRETLSIIKNKKDKVKFMALLQ 2020
+FL +QM+ RE L + D+ L +
Sbjct: 5 EFLMEQMELREALEEARASDDEEALDELKK 34
>gnl|CDD|132384 TIGR03341, YhgI_GntY, IscR-regulated protein YhgI. IscR
(TIGR02010) is an iron-sulfur cluster-binding
transcriptional regulator (see Genome Property
GenProp0138). Members of this protein family include
YhgI, whose expression is under control of IscR, and
show sequence similarity to IscA, a known protein of
iron-sulfur cluster biosynthesis. These two lines of
evidence strongly suggest a role as an iron-sulfur
cluster biosynthesis protein. An older study designated
this protein GntY and suggested a role for it and for
the product of an adjacent gene, based on
complementation studies, in gluconate utilization
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 190
Score = 32.3 bits (74), Expect = 2.4
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 470 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCS----GLSYKLEYVDEKRKEDQVFKLNGV 525
+T+ A Y+ K + K+ +G G+R+ V N G +SY DE D + NG
Sbjct: 3 ITEAAQAYLAKLLAKQNEGTGIRVFVVNPGTPYAECCVSYCPP--DEVEPSDIKLEFNGF 60
Query: 526 QIFINEKDLLYFNDNFI 542
+++ + D I
Sbjct: 61 SAYVDALSAPFLEDAVI 77
Score = 32.3 bits (74), Expect = 2.4
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 1866 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCS----GLSYKLEYVDEKRKEDQVFKLNGV 1921
+T+ A Y+ K + K+ +G G+R+ V N G +SY DE D + NG
Sbjct: 3 ITEAAQAYLAKLLAKQNEGTGIRVFVVNPGTPYAECCVSYCPP--DEVEPSDIKLEFNGF 60
Query: 1922 QIFINEKDLLYFNDNFI 1938
+++ + D I
Sbjct: 61 SAYVDALSAPFLEDAVI 77
>gnl|CDD|224843 COG1932, SerC, Phosphoserine aminotransferase [Coenzyme metabolism
/ Amino acid transport and metabolism].
Length = 365
Score = 32.6 bits (75), Expect = 2.9
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 142 VMLVNNEI-GV-IQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI 199
N I GV + + +IG S G++ DA+ A+ I++ Y D++ A K
Sbjct: 149 HFCWNETISGVEVPELPDIG----SDGLLV-ADASSAILSRPIDVSKY--DVIYAGAQKN 201
Query: 200 YGPKGIGALYIRRNPRTRIE 219
GP G+ + +R + R E
Sbjct: 202 LGPAGLTVVIVRPDLLERAE 221
Score = 32.6 bits (75), Expect = 2.9
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 1538 VMLVNNEI-GV-IQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI 1595
N I GV + + +IG S G++ DA+ A+ I++ Y D++ A K
Sbjct: 149 HFCWNETISGVEVPELPDIG----SDGLLV-ADASSAILSRPIDVSKY--DVIYAGAQKN 201
Query: 1596 YGPKGIGALYIRRNPRTRIE 1615
GP G+ + +R + R E
Sbjct: 202 LGPAGLTVVIVRPDLLERAE 221
>gnl|CDD|223935 COG1003, GcvP, Glycine cleavage system protein P
(pyridoxal-binding), C-terminal domain [Amino acid
transport and metabolism].
Length = 496
Score = 32.7 bits (75), Expect = 3.0
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVN-NEIGVIQP-ILEIGELCRSKGV 167
GF+V +K NG + L L K + ++M+ N + +GV + I EI E+ G
Sbjct: 178 GFKVVVVKCDENGNVDLDDLRAKAEDNL--AALMITNPSTLGVFEEDIREICEIVHEAGG 235
Query: 168 IFHCDAAQ---AVGKI---DINIQNYKVDLMSFSAHKIY-GPKGIG 206
+ D A VG D+ D++ + HK + P G G
Sbjct: 236 QVYYDGANLNAIVGLARPGDMG-----FDVVHLNLHKTFCIPHGGG 276
Score = 32.7 bits (75), Expect = 3.0
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVN-NEIGVIQP-ILEIGELCRSKGV 1563
GF+V +K NG + L L K + ++M+ N + +GV + I EI E+ G
Sbjct: 178 GFKVVVVKCDENGNVDLDDLRAKAEDNL--AALMITNPSTLGVFEEDIREICEIVHEAGG 235
Query: 1564 IFHCDAAQ---AVGKI---DINIQNYKVDLMSFSAHKIY-GPKGIG 1602
+ D A VG D+ D++ + HK + P G G
Sbjct: 236 QVYYDGANLNAIVGLARPGDMG-----FDVVHLNLHKTFCIPHGGG 276
>gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and
similar proteins. Human HSPA12B (also known as 70-kDa
heat shock protein-12B, chromosome 20 open reading frame
60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps
to 20p13) belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). No
co-chaperones have yet been identified for HSPA12B.
HSPA12B is predominantly expressed in endothelial cells,
is required for angiogenesis, and may interact with
known angiogenesis mediators. HSPA12B may be important
for host defense in microglia-mediated immune response.
HSPA12B expression is up-regulated in lipopolysaccharide
(LPS)-induced inflammatory response in the spinal cord,
and mostly located in active microglia; this induced
expression may be regulated by activation of MAPK-p38,
ERK1/2 and SAPK/JNK signaling pathways. Overexpression
of HSPA12B also protects against LPS-induced cardiac
dysfunction and involves the preserved activation of the
PI3K/Akt signaling pathway.
Length = 468
Score = 32.3 bits (73), Expect = 4.0
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 769 VITVPAYFNDIQRQFTKNAAKLAGL----NVLRLLN--EPTSAAI 807
V+TVPA + +QF + AA LAGL N +LL EP +A+I
Sbjct: 144 VLTVPAIWKQPAKQFMREAAYLAGLVSPENPEQLLIALEPEAASI 188
Score = 32.3 bits (73), Expect = 4.0
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 2165 VITVPAYFNDIQRQFTKNAAKLAGL----NVLRLLN--EPTSAAI 2203
V+TVPA + +QF + AA LAGL N +LL EP +A+I
Sbjct: 144 VLTVPAIWKQPAKQFMREAAYLAGLVSPENPEQLLIALEPEAASI 188
>gnl|CDD|147133 pfam04822, Takusan, Takusan. This domain is named takusan, which
is a Japanese word meaning 'many'. Members of this
family regulate synaptic activity.
Length = 84
Score = 29.6 bits (67), Expect = 4.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 251 ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI 296
I+ EELK L L + N L + I ++Y+NG +N R+ I
Sbjct: 16 KNIKELEELKLELRLITQERNELRD-ILDLYMNGSLNYRLNPEYEI 60
Score = 29.6 bits (67), Expect = 4.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 1647 ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI 1692
I+ EELK L L + N L + I ++Y+NG +N R+ I
Sbjct: 16 KNIKELEELKLELRLITQERNELRD-ILDLYMNGSLNYRLNPEYEI 60
>gnl|CDD|236469 PRK09331, PRK09331, Sep-tRNA:Cys-tRNA synthetase; Provisional.
Length = 387
Score = 31.8 bits (73), Expect = 5.2
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY---GPKGI 205
++ ++ G+ F + A VG++ ++ + D + S HK P G+
Sbjct: 179 KVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGV 230
Score = 31.8 bits (73), Expect = 5.2
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 1553 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY---GPKGI 1601
++ ++ G+ F + A VG++ ++ + D + S HK P G+
Sbjct: 179 KVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGV 230
>gnl|CDD|224180 COG1260, INO1, Myo-inositol-1-phosphate synthase [Lipid
metabolism].
Length = 362
Score = 31.5 bits (72), Expect = 5.4
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 702 SSIKRFIARDLKNINTNSFPYDF-----QNKFGMLHIKTISGIKSPIEI----------- 745
S++ + L + + P D+ K + I+ P+ +
Sbjct: 248 SAVTSILGYKLGDKPIHIGPSDYVEPLGDRKVAYMRIEGKLFGGVPMNLEIKLEVEDSPN 307
Query: 746 SAQIFITLKKIAENAVNNRIFGAVITVPAYF 776
SA + I L ++A+ A++ I G V V AYF
Sbjct: 308 SAGLIIDLVRLAKLALDRGIGGPVYEVSAYF 338
Score = 31.5 bits (72), Expect = 5.4
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 2098 SSIKRFIARDLKNINTNSFPYDF-----QNKFGMLHIKTISGIKSPIEI----------- 2141
S++ + L + + P D+ K + I+ P+ +
Sbjct: 248 SAVTSILGYKLGDKPIHIGPSDYVEPLGDRKVAYMRIEGKLFGGVPMNLEIKLEVEDSPN 307
Query: 2142 SAQIFITLKKIAENAVNNRIFGAVITVPAYF 2172
SA + I L ++A+ A++ I G V V AYF
Sbjct: 308 SAGLIIDLVRLAKLALDRGIGGPVYEVSAYF 338
>gnl|CDD|153280 cd07596, BAR_SNX, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
Nexins. BAR domains are dimerization, lipid binding and
curvature sensing modules found in many different
proteins with diverse functions. Sorting nexins (SNXs)
are Phox homology (PX) domain containing proteins that
are involved in regulating membrane traffic and protein
sorting in the endosomal system. SNXs differ from each
other in their lipid-binding specificity, subcellular
localization and specific function in the endocytic
pathway. A subset of SNXs also contain BAR domains. The
PX-BAR structural unit determines the specific membrane
targeting of SNXs. BAR domains form dimers that bind to
membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 218
Score = 31.2 bits (71), Expect = 6.3
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 350 IGRFTTEKEIDFTIKLLKMKEFFMSYSEKVLDHYEN 385
+ RF E+ D L + + Y+EK+ + +E+
Sbjct: 179 LKRFHEERARDLKAALKEFARLQVQYAEKIAEAWES 214
Score = 31.2 bits (71), Expect = 6.3
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 1746 IGRFTTEKEIDFTIKLLKMKEFFMSYSEKVLDHYEN 1781
+ RF E+ D L + + Y+EK+ + +E+
Sbjct: 179 LKRFHEERARDLKAALKEFARLQVQYAEKIAEAWES 214
>gnl|CDD|236049 PRK07562, PRK07562, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1220
Score = 31.5 bits (72), Expect = 7.4
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 1211 KICTR----IMRELRVAINFGN---NPDTNIKLRLAIEKALDANIPKNNIFRAIQ 1258
KI ++ IM+ G+ +P N L+ I+ A A +P+N I R IQ
Sbjct: 312 KIVSKHLKAIMKACVNCEGDGDDCFDPAKNPALKREIKAAKKALVPENYIKRVIQ 366
>gnl|CDD|115392 pfam06730, FAM92, FAM92 protein. This family of proteins has a
role in embryogenesis. During embryogenesis it is
essential for ectoderm and axial mesoderm development.
It may regulate cell proliferation and apoptosis.
Length = 219
Score = 30.7 bits (69), Expect = 7.8
Identities = 21/119 (17%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 869 NAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL---NVKLS----DKKIVNIT--IDMK 919
+ F K Y+ + ++++ ++ L Y + VK+ ++K + +++ + +
Sbjct: 75 DEFAKLQDYRQAEVERLEAKVVEPLKQYGTIVKMKRDDLKATLTARNREAKQLRQLERTR 134
Query: 920 QFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 978
Q +H++++ +A MDA T + + I ++K I + +S F +L
Sbjct: 135 QRNPSDRHVISQAETELQRAKMDAQRTSRHLEETIGNFEQQKLKDIKQIISEFITIEML 193
Score = 30.7 bits (69), Expect = 7.8
Identities = 21/119 (17%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 2265 NAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL---NVKLS----DKKIVNIT--IDMK 2315
+ F K Y+ + ++++ ++ L Y + VK+ ++K + +++ + +
Sbjct: 75 DEFAKLQDYRQAEVERLEAKVVEPLKQYGTIVKMKRDDLKATLTARNREAKQLRQLERTR 134
Query: 2316 QFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 2374
Q +H++++ +A MDA T + + I ++K I + +S F +L
Sbjct: 135 QRNPSDRHVISQAETELQRAKMDAQRTSRHLEETIGNFEQQKLKDIKQIISEFITIEML 193
>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH)
and Choline Kinase (ChoK) family. The APH/ChoK family is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). The family is composed
of APH, ChoK, ethanolamine kinase (ETNK), macrolide
2'-phosphotransferase (MPH2'), an unusual homoserine
kinase, and uncharacterized proteins with similarity to
the N-terminal domain of acyl-CoA dehydrogenase 10
(ACAD10). The members of this family catalyze the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to small molecule substrates such as aminoglycosides,
macrolides, choline, ethanolamine, and homoserine.
Phosphorylation of the antibiotics, aminoglycosides and
macrolides, leads to their inactivation and to bacterial
antibiotic resistance. Phosphorylation of choline,
ethanolamine, and homoserine serves as precursors to the
synthesis of important biological compounds, such as the
major phospholipids, phosphatidylcholine and
phosphatidylethanolamine and the amino acids, threonine,
methionine, and isoleucine.
Length = 155
Score = 30.1 bits (68), Expect = 8.6
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 431 KTYGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELVT 471
K G + S L+ EW++G+TLDE + DIAE+L
Sbjct: 57 KVLASGESDGWSYLLMEWIEGETLDEVSEEEKEDIAEQLAE 97
Score = 30.1 bits (68), Expect = 8.6
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 1827 KTYGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELVT 1867
K G + S L+ EW++G+TLDE + DIAE+L
Sbjct: 57 KVLASGESDGWSYLLMEWIEGETLDEVSEEEKEDIAEQLAE 97
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 31.0 bits (70), Expect = 8.9
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 152 IQPILEIGELCRSKGVIFHCDAAQA 176
+ P+LE+G++ +S G+ FH DAA A
Sbjct: 255 VDPLLELGKIAKSNGMWFHVDAAYA 279
Score = 31.0 bits (70), Expect = 8.9
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 1548 IQPILEIGELCRSKGVIFHCDAAQA 1572
+ P+LE+G++ +S G+ FH DAA A
Sbjct: 255 VDPLLELGKIAKSNGMWFHVDAAYA 279
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.391
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 133,376,535
Number of extensions: 13839369
Number of successful extensions: 13631
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13111
Number of HSP's successfully gapped: 374
Length of query: 2602
Length of database: 10,937,602
Length adjustment: 113
Effective length of query: 2489
Effective length of database: 5,925,600
Effective search space: 14748818400
Effective search space used: 14748818400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (29.9 bits)