RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15216
(2602 letters)
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 721 bits (1863), Expect = 0.0
Identities = 245/369 (66%), Positives = 317/369 (85%), Gaps = 3/369 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
+DYSATTP+DPRV +KM+ ++ + FGNPASR+H +GW AE+A++ ARN++A L+ ADP
Sbjct: 26 LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP 85
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
REI++TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 86 REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP 145
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ NG+I L +LE + DTILVS+M VNNEIGV+Q I IGE+CR++G+I+H DA Q+VG
Sbjct: 146 QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVG 205
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
K+ I++ KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL
Sbjct: 206 KLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV 265
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
HQIVGMGEA+R+A+ EM E++R+ L+ RL+NG+ + IEE+Y+NGD+ + P+ LN+SF
Sbjct: 266 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSF 324
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 325 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 384
Query: 359 IDFTIKLLK 367
ID+TI+L++
Sbjct: 385 IDYTIELVR 393
Score = 712 bits (1841), Expect = 0.0
Identities = 242/365 (66%), Positives = 313/365 (85%), Gaps = 3/365 (0%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREII 1458
ATTP+DPRV +KM+ ++ + FGNPASR+H +GW AE+A++ ARN++A L+ ADPREI+
Sbjct: 30 ATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIV 89
Query: 1459 WTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG 1518
+TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P+ NG
Sbjct: 90 FTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNG 149
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
+I L +LE + DTILVS+M VNNEIGV+Q I IGE+CR++G+I+H DA Q+VGK+ I
Sbjct: 150 IIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPI 209
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIV 1638
++ KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL HQIV
Sbjct: 210 DLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIV 269
Query: 1639 GMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 1698
GMGEA+R+A+ EM E++R+ L+ RL+NG+ + IEE+Y+NGD+ + P+ LN+SFN++E
Sbjct: 270 GMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSFNYVE 328
Query: 1699 GESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT 1758
GESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+EID+T
Sbjct: 329 GESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYT 388
Query: 1759 IKLLK 1763
I+L++
Sbjct: 389 IELVR 393
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 688 bits (1777), Expect = 0.0
Identities = 150/369 (40%), Positives = 246/369 (66%), Gaps = 7/369 (1%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
DY++ P+D R+++ M+PY+ FGNP+S H YG+ A +A+++AR +VA+L+
Sbjct: 4 FDYTSAKPVDERILEAMLPYMTESFGNPSSV-HSYGFKAREAVQEAREKVAKLVNGGGGT 62
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
+++TSGATE+NNLAI G A ++GKHI+ EH SV++ + L+ GF V Y+
Sbjct: 63 VVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK 122
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
G + +S +++K+ DTILVSV NNEIG IQP+ EI E+ K H DA +VG+I
Sbjct: 123 YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQI 181
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
+++++ D+++ S++ IYGPKG+GAL+IR+ +++ I GGG E GLRSG+
Sbjct: 182 EVDVEKIGADMLTISSNDIYGPKGVGALWIRK--EAKLQPVILGGGQENGLRSGSENVPS 239
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVG G+A + +E +EE +R+ L+ R+ + +++ IEE Y+NG R+P+N+N+ F++
Sbjct: 240 IVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSY 298
Query: 301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
IEGES+++++ I S+GSAC+S +L+PS+VL A G E AH ++ T+GR+ T+++
Sbjct: 299 IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDED 358
Query: 359 IDFTIKLLK 367
+D +++L
Sbjct: 359 VDRLLEVLP 367
Score = 679 bits (1755), Expect = 0.0
Identities = 148/365 (40%), Positives = 243/365 (66%), Gaps = 7/365 (1%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
+ P+D R+++ M+PY+ FGNP+S H YG+ A +A+++AR +VA+L+ +++T
Sbjct: 8 SAKPVDERILEAMLPYMTESFGNPSSV-HSYGFKAREAVQEAREKVAKLVNGGGGTVVFT 66
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 1520
SGATE+NNLAI G A ++GKHI+ EH SV++ + L+ GF V Y+ G +
Sbjct: 67 SGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEV 126
Query: 1521 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI 1580
+S +++K+ DTILVSV NNEIG IQP+ EI E+ K H DA +VG+I++++
Sbjct: 127 DVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDV 185
Query: 1581 QNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 1640
+ D+++ S++ IYGPKG+GAL+IR+ +++ I GGG E GLRSG+ IVG
Sbjct: 186 EKIGADMLTISSNDIYGPKGVGALWIRK--EAKLQPVILGGGQENGLRSGSENVPSIVGF 243
Query: 1641 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 1700
G+A + +E +EE +R+ L+ R+ + +++ IEE Y+NG R+P+N+N+ F++IEGE
Sbjct: 244 GKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSYIEGE 302
Query: 1701 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT 1758
S+++++ I S+GSAC+S +L+PS+VL A G E AH ++ T+GR+ T++++D
Sbjct: 303 SIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRL 362
Query: 1759 IKLLK 1763
+++L
Sbjct: 363 LEVLP 367
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 677 bits (1749), Expect = 0.0
Identities = 145/371 (39%), Positives = 221/371 (59%), Gaps = 9/371 (2%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
D +ATT +D RV+++MI + R ++GNP S H G A +EKAR +VA+++ P E
Sbjct: 5 FDNNATTRVDDRVLEEMIVFYREKYGNPNSA-HGMGIEANLHMEKAREKVAKVLGVSPSE 63
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
I +TS ATES N +K A ++KR + IIT EHK+VL++++ L GF+V Y+ +
Sbjct: 64 IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS 123
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG--VIFHCDAAQAVG 178
G++ L +LE+ + DT LVS+M NNE+G IQP+ ++ + + K + H DA Q +G
Sbjct: 124 RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIG 183
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
KI +++ +VD SFSAHK +GPKG+G YIR+ I IHGGG E GLRSGT
Sbjct: 184 KIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRK--GVPIRPLIHGGGQERGLRSGTQNV 241
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
IVG A +A E+ E K + L+ +L +GLM +I + +P+ L++SF
Sbjct: 242 PGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN--LGAHIITPLEISLPNTLSVSF 299
Query: 299 NFIEGESLLMA--IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
I G +L I VS+ SACTS +VL A+G + +A +IR ++ ++ TE
Sbjct: 300 PNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE 359
Query: 357 KEIDFTIKLLK 367
+E+D+ +K ++
Sbjct: 360 EEVDYFLKKIE 370
Score = 668 bits (1727), Expect = 0.0
Identities = 144/367 (39%), Positives = 219/367 (59%), Gaps = 9/367 (2%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
ATT +D RV+++MI + R ++GNP S H G A +EKAR +VA+++ P EI +T
Sbjct: 9 ATTRVDDRVLEEMIVFYREKYGNPNSA-HGMGIEANLHMEKAREKVAKVLGVSPSEIFFT 67
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 1520
S ATES N +K A ++KR + IIT EHK+VL++++ L GF+V Y+ + G++
Sbjct: 68 SCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVV 127
Query: 1521 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG--VIFHCDAAQAVGKIDI 1578
L +LE+ + DT LVS+M NNE+G IQP+ ++ + + K + H DA Q +GKI
Sbjct: 128 KLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPF 187
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIV 1638
+++ +VD SFSAHK +GPKG+G YIR+ I IHGGG E GLRSGT IV
Sbjct: 188 SLEKLEVDYASFSAHKFHGPKGVGITYIRK--GVPIRPLIHGGGQERGLRSGTQNVPGIV 245
Query: 1639 GMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 1698
G A +A E+ E K + L+ +L +GLM +I + +P+ L++SF I
Sbjct: 246 GAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN--LGAHIITPLEISLPNTLSVSFPNIR 303
Query: 1699 GESLLMA--IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 1756
G +L I VS+ SACTS +VL A+G + +A +IR ++ ++ TE+E+D
Sbjct: 304 GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVD 363
Query: 1757 FTIKLLK 1763
+ +K ++
Sbjct: 364 YFLKKIE 370
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 639 bits (1651), Expect = 0.0
Identities = 125/403 (31%), Positives = 202/403 (50%), Gaps = 38/403 (9%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MDY+ATTP++P V+ + ++ +GNP S +++ G A+ I AR +A++I P++
Sbjct: 22 MDYNATTPLEPEVIQAVTEAMKEAWGNP-SSSYVAGRKAKDIINTARASLAKMIGGKPQD 80
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRG-----------------KHIITVQTEHKSVLDSI 103
II+TSG TESNNL I + ++ H IT EH S+ +
Sbjct: 81 IIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPL 140
Query: 104 RKL-ENDGFRVTYLKP-KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161
L E+ VT++ K NG + + + + T LV++ML NNE GVI PI EI
Sbjct: 141 EHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRR 200
Query: 162 CRSKG----------VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR 211
++ V+ H DAAQA+GK +++++ VD ++ HK YGP+ IGALY+R
Sbjct: 201 IKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IGALYVR 259
Query: 212 RNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLY 270
+ T + + GGG E R GT T I G+G+A L + + ++ L
Sbjct: 260 GVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLE 319
Query: 271 NGLMESI-EEIYINGDMN--NRIPHNLNISFNFIEGES--LLMAIKDIAVSSGSACTSAS 325
L + I++N R+P+ N S + +L + + S G++C S
Sbjct: 320 ERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDH 379
Query: 326 LE-PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
+ PS VL + G ++A +++R ++GR TT E+D ++ LK
Sbjct: 380 EDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLK 422
Score = 632 bits (1633), Expect = 0.0
Identities = 128/424 (30%), Positives = 207/424 (48%), Gaps = 40/424 (9%)
Query: 1378 MTGFKAESSGIVMRPYTNIVFKD--ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTA 1435
M + + G V P V+ D ATTP++P V+ + ++ +GNP S +++ G A
Sbjct: 1 MDVARNGARGSVESPPNRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNP-SSSYVAGRKA 59
Query: 1436 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG------------- 1482
+ I AR +A++I P++II+TSG TESNNL I + ++
Sbjct: 60 KDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPE 119
Query: 1483 ----KHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKP-KNNGLITLSQLEEKICSDTILV 1536
H IT EH S+ + L E+ VT++ K NG + + + + T LV
Sbjct: 120 EGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLV 179
Query: 1537 SVMLVNNEIGVIQPILEIGELCRSKG----------VIFHCDAAQAVGKIDINIQNYKVD 1586
++ML NNE GVI PI EI ++ V+ H DAAQA+GK +++++ VD
Sbjct: 180 TIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVD 239
Query: 1587 LMSFSAHKIYGPKGIGALYIRRNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR 1645
++ HK YGP+ IGALY+R + T + + GGG E R GT T I G+G+A
Sbjct: 240 FLTIVGHKFYGPR-IGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAD 298
Query: 1646 LARIEMKEELKRILFLQKRLYNGLMESI-EEIYINGDMN--NRIPHNLNISFNFIEGES- 1701
L + + ++ L L + I++N R+P+ N S +
Sbjct: 299 LVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGY 358
Query: 1702 -LLMAIKDIAVSSGSACTSASLE-PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTI 1759
+L + + S G++C S + PS VL + G ++A +++R ++GR TT E+D +
Sbjct: 359 MVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIV 418
Query: 1760 KLLK 1763
+ LK
Sbjct: 419 QDLK 422
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 450 bits (1159), Expect = e-140
Identities = 214/521 (41%), Positives = 308/521 (59%), Gaps = 38/521 (7%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64
Query: 700 TISSIKRFIARDLKNINT----NSFPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLK 754
T+ +IKR I R ++ + P+ G ++ +P +ISA++ +K
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 124
Query: 755 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
K AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK
Sbjct: 125 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 184
Query: 815 IFEGIFAVYDLGGGTFDISILKFKN----GVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 870
AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V+
Sbjct: 185 TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEE- 243
Query: 871 FLKK----LSYKDVNILMIKSREIKEL-------LSYQSSVKLNVKL-------SDKKIV 912
F K L D + R +KE LS S+ + +V L + K +
Sbjct: 244 FKKDQGIDLR-NDP---LAMQR-LKEAAEKAKIELS--SAQQTDVNLPYITADATGPKHM 296
Query: 913 NITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF 972
NI + + ++ + LVNR+I AL DA L++ DI++VILVGG TRM + + V+ F
Sbjct: 297 NIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEF 356
Query: 973 FKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIF 1032
F ++PD+AV GAA+Q L+G+ + LLLDV PLSLGIET+GG++ +I
Sbjct: 357 FGKEPRKDVNPDEAVAIGAAVQGGVLTGDV---KDVLLLDVTPLSLGIETMGGVMTTLIA 413
Query: 1033 RNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIK 1092
+NTTIP +S F+T +DNQ+A+ I V+QGE + + + L F L I P P G +I+
Sbjct: 414 KNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIE 473
Query: 1093 VTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKN 1133
VT+ +DADG+L + A +K SGK++ ITIK +N DEI+
Sbjct: 474 VTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQK 514
Score = 450 bits (1159), Expect = e-140
Identities = 214/521 (41%), Positives = 308/521 (59%), Gaps = 38/521 (7%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64
Query: 2096 TISSIKRFIARDLKNINT----NSFPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLK 2150
T+ +IKR I R ++ + P+ G ++ +P +ISA++ +K
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 124
Query: 2151 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
K AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK
Sbjct: 125 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 184
Query: 2211 IFEGIFAVYDLGGGTFDISILKFKN----GVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 2266
AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V+
Sbjct: 185 TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEE- 243
Query: 2267 FLKK----LSYKDVNILMIKSREIKEL-------LSYQSSVKLNVKL-------SDKKIV 2308
F K L D + R +KE LS S+ + +V L + K +
Sbjct: 244 FKKDQGIDLR-NDP---LAMQR-LKEAAEKAKIELS--SAQQTDVNLPYITADATGPKHM 296
Query: 2309 NITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF 2368
NI + + ++ + LVNR+I AL DA L++ DI++VILVGG TRM + + V+ F
Sbjct: 297 NIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEF 356
Query: 2369 FKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIF 2428
F ++PD+AV GAA+Q L+G+ + LLLDV PLSLGIET+GG++ +I
Sbjct: 357 FGKEPRKDVNPDEAVAIGAAVQGGVLTGDV---KDVLLLDVTPLSLGIETMGGVMTTLIA 413
Query: 2429 RNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIK 2488
+NTTIP +S F+T +DNQ+A+ I V+QGE + + + L F L I P P G +I+
Sbjct: 414 KNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIE 473
Query: 2489 VTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKN 2529
VT+ +DADG+L + A +K SGK++ ITIK +N DEI+
Sbjct: 474 VTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQK 514
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 435 bits (1120), Expect = e-136
Identities = 205/511 (40%), Positives = 293/511 (57%), Gaps = 49/511 (9%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VA++ +V+ + G PS+V + +G+ VG+ AK Q I N
Sbjct: 5 IGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAK-RQAITNPN 62
Query: 700 TISSIKRFIARDLK-NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 758
TI SIKR + D K I + +P EISA I LK AE
Sbjct: 63 TIISIKRHMGTDYKVEIEGKQY--------------------TPQEISAIILQYLKSYAE 102
Query: 759 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 818
+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK +
Sbjct: 103 DYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDKEEDQT 162
Query: 819 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK---- 874
I VYDLGGGTFD+SIL+ +GVF+V + GD++LGGDDFD + ++V F ++
Sbjct: 163 I-LVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQ-FKQEHGID 220
Query: 875 LSYKDVNILMIKSREI-----KELLSYQSSVKLNVKL-------SDKKIVNITIDMKQFF 922
LS KD + + + ++ KEL + + L + + +T+ +F
Sbjct: 221 LS-KD-KMALQRLKDAAEKAKKELSGVTQT---QISLPFISANENGPLHLEMTLTRAKFE 275
Query: 923 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSID 982
++ HLV RT+ +AL DA LT DI+ VILVGGSTR+ + E + ++
Sbjct: 276 ELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVN 335
Query: 983 PDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYS 1042
PD+ V GAAIQ ++G + +LLDV PLSLGIET+GG+ K+I RNTTIP S S
Sbjct: 336 PDEVVAIGAAIQGGVIAGEVK---DVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKS 392
Query: 1043 GEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGL 1102
FTT DNQT + I V+QGE + + + L F+L IPP P G +I+VT+ +DA+G+
Sbjct: 393 QVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGI 452
Query: 1103 LSIFAYEKISGKKKFITIKPFYNMNLDEIKN 1133
+ + A + + K++ ITIK ++ +EI+
Sbjct: 453 VHVRAKDLGTNKEQSITIKSSSGLSEEEIQR 483
Score = 435 bits (1120), Expect = e-136
Identities = 205/511 (40%), Positives = 293/511 (57%), Gaps = 49/511 (9%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VA++ +V+ + G PS+V + +G+ VG+ AK Q I N
Sbjct: 5 IGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAK-RQAITNPN 62
Query: 2096 TISSIKRFIARDLK-NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 2154
TI SIKR + D K I + +P EISA I LK AE
Sbjct: 63 TIISIKRHMGTDYKVEIEGKQY--------------------TPQEISAIILQYLKSYAE 102
Query: 2155 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 2214
+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK +
Sbjct: 103 DYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDKEEDQT 162
Query: 2215 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK---- 2270
I VYDLGGGTFD+SIL+ +GVF+V + GD++LGGDDFD + ++V F ++
Sbjct: 163 I-LVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQ-FKQEHGID 220
Query: 2271 LSYKDVNILMIKSREI-----KELLSYQSSVKLNVKL-------SDKKIVNITIDMKQFF 2318
LS KD + + + ++ KEL + + L + + +T+ +F
Sbjct: 221 LS-KD-KMALQRLKDAAEKAKKELSGVTQT---QISLPFISANENGPLHLEMTLTRAKFE 275
Query: 2319 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSID 2378
++ HLV RT+ +AL DA LT DI+ VILVGGSTR+ + E + ++
Sbjct: 276 ELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVN 335
Query: 2379 PDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYS 2438
PD+ V GAAIQ ++G + +LLDV PLSLGIET+GG+ K+I RNTTIP S S
Sbjct: 336 PDEVVAIGAAIQGGVIAGEVK---DVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKS 392
Query: 2439 GEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGL 2498
FTT DNQT + I V+QGE + + + L F+L IPP P G +I+VT+ +DA+G+
Sbjct: 393 QVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGI 452
Query: 2499 LSIFAYEKISGKKKFITIKPFYNMNLDEIKN 2529
+ + A + + K++ ITIK ++ +EI+
Sbjct: 453 VHVRAKDLGTNKEQSITIKSSSGLSEEEIQR 483
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 433 bits (1116), Expect = e-134
Identities = 198/510 (38%), Positives = 293/510 (57%), Gaps = 32/510 (6%)
Query: 636 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI 695
K ++GID GTT S V + ++ E++ + G PS V + D + +G AK +
Sbjct: 3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 61
Query: 696 DPKNTISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIK-TISGIK---SP 742
+P NT+ KR I R D+K+ +P+ N G ++ G P
Sbjct: 62 NPTNTVFDAKRLIGRRFDDAVVQSDMKH-----WPFMVVNDAGRPKVQVEYKGETKSFYP 116
Query: 743 IEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEP 802
E+S+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEP
Sbjct: 117 EEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEP 176
Query: 803 TSAAIAYKLDKNIF-EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYC 861
T+AAIAY LDK + E ++DLGGGTFD+SIL G+F+V S GD++LGG+DFD
Sbjct: 177 TAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNR 236
Query: 862 LFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKLNV-KLSDKKIVN 913
+ + + F +K KD+ + + R K LS + + + L +
Sbjct: 237 MVNHFIAE-FKRKHK-KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFY 294
Query: 914 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 973
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 295 TSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFF 354
Query: 974 K-TTLLTSIDPDKAVVFGAAIQANFLSGNRGID-DNFLLLDVIPLSLGIETIGGLVEKII 1031
L SI+PD+AV +GAA+QA LSG++ + + LLLDV PLSLGIET GG++ +I
Sbjct: 355 NGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLI 414
Query: 1032 FRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARI 1091
RNTTIP + FTT+ DNQ + I+V +GE + K+ +L FEL IPP P G +I
Sbjct: 415 KRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQI 474
Query: 1092 KVTYQVDADGLLSIFAYEKISGKKKFITIK 1121
+VT+ +DA+G+L++ A +K +GK+ ITI
Sbjct: 475 EVTFDIDANGILNVSAVDKSTGKENKITIT 504
Score = 433 bits (1116), Expect = e-134
Identities = 198/510 (38%), Positives = 293/510 (57%), Gaps = 32/510 (6%)
Query: 2032 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI 2091
K ++GID GTT S V + ++ E++ + G PS V + D + +G AK +
Sbjct: 3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 61
Query: 2092 DPKNTISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIK-TISGIK---SP 2138
+P NT+ KR I R D+K+ +P+ N G ++ G P
Sbjct: 62 NPTNTVFDAKRLIGRRFDDAVVQSDMKH-----WPFMVVNDAGRPKVQVEYKGETKSFYP 116
Query: 2139 IEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEP 2198
E+S+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEP
Sbjct: 117 EEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEP 176
Query: 2199 TSAAIAYKLDKNIF-EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYC 2257
T+AAIAY LDK + E ++DLGGGTFD+SIL G+F+V S GD++LGG+DFD
Sbjct: 177 TAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNR 236
Query: 2258 LFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKLNV-KLSDKKIVN 2309
+ + + F +K KD+ + + R K LS + + + L +
Sbjct: 237 MVNHFIAE-FKRKHK-KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFY 294
Query: 2310 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 2369
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 295 TSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFF 354
Query: 2370 K-TTLLTSIDPDKAVVFGAAIQANFLSGNRGID-DNFLLLDVIPLSLGIETIGGLVEKII 2427
L SI+PD+AV +GAA+QA LSG++ + + LLLDV PLSLGIET GG++ +I
Sbjct: 355 NGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLI 414
Query: 2428 FRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARI 2487
RNTTIP + FTT+ DNQ + I+V +GE + K+ +L FEL IPP P G +I
Sbjct: 415 KRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQI 474
Query: 2488 KVTYQVDADGLLSIFAYEKISGKKKFITIK 2517
+VT+ +DA+G+L++ A +K +GK+ ITI
Sbjct: 475 EVTFDIDANGILNVSAVDKSTGKENKITIT 504
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein
folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 409 bits (1053), Expect = e-124
Identities = 113/525 (21%), Positives = 225/525 (42%), Gaps = 54/525 (10%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
G+D G NS++A+ RN +++ ++ PS+V + P + Y+G+ K Q + KN
Sbjct: 5 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNR-YLGETGKNKQTSNIKN 63
Query: 700 TISSIKRFIAR---------DLKNINTNSFPY---DFQNKFGMLHIKTISGIK--SPIEI 745
T++++KR I + K+ F + +K ++ S ++
Sbjct: 64 TVANLKRIIGLDYHHPDFEQESKH-----FTSKLVELDDKKTGAEVRFAGEKHVFSATQL 118
Query: 746 SAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSA 805
+A +K + I I VP ++ + QR +AA++AGLN +R++N+ T+A
Sbjct: 119 AAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAA 178
Query: 806 AIAYKLDKNIF------EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFD 859
++Y + K I A D+G ++ SI+ FK G KVL D + GG DFD
Sbjct: 179 GVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFD 238
Query: 860 YCLFSWIVKNAFLKKLSYKDVNI-------LMIKSREIKELLSYQSSVKLNVK-LSDKKI 911
+ F K D+ ++ + ++K++LS ++ +V+ + +
Sbjct: 239 LAITEHFADE-FKTKYK-IDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVD 296
Query: 912 VNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSN 971
V+ + ++ + + L+ R +KAL A L+ ++++ V ++GG+TR+ + + +S
Sbjct: 297 VSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISE 356
Query: 972 FFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVE--- 1028
F L T+++ D+A+ GAA S + F D+ P S+ + +
Sbjct: 357 AFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRP-FKFEDIHPYSVSYSWDKQVEDEDH 415
Query: 1029 -KIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAG 1087
++ ++ P + D A + + +AN+E+ +
Sbjct: 416 MEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQ 473
Query: 1088 R-ARIKVTYQVDADGLLSI----------FAYEKISGKKKFITIK 1121
+K+ + D GL +I + + KK +TI
Sbjct: 474 DSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIV 518
Score = 409 bits (1053), Expect = e-124
Identities = 113/525 (21%), Positives = 225/525 (42%), Gaps = 54/525 (10%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
G+D G NS++A+ RN +++ ++ PS+V + P + Y+G+ K Q + KN
Sbjct: 5 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNR-YLGETGKNKQTSNIKN 63
Query: 2096 TISSIKRFIAR---------DLKNINTNSFPY---DFQNKFGMLHIKTISGIK--SPIEI 2141
T++++KR I + K+ F + +K ++ S ++
Sbjct: 64 TVANLKRIIGLDYHHPDFEQESKH-----FTSKLVELDDKKTGAEVRFAGEKHVFSATQL 118
Query: 2142 SAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSA 2201
+A +K + I I VP ++ + QR +AA++AGLN +R++N+ T+A
Sbjct: 119 AAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAA 178
Query: 2202 AIAYKLDKNIF------EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFD 2255
++Y + K I A D+G ++ SI+ FK G KVL D + GG DFD
Sbjct: 179 GVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFD 238
Query: 2256 YCLFSWIVKNAFLKKLSYKDVNI-------LMIKSREIKELLSYQSSVKLNVK-LSDKKI 2307
+ F K D+ ++ + ++K++LS ++ +V+ + +
Sbjct: 239 LAITEHFADE-FKTKYK-IDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVD 296
Query: 2308 VNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSN 2367
V+ + ++ + + L+ R +KAL A L+ ++++ V ++GG+TR+ + + +S
Sbjct: 297 VSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISE 356
Query: 2368 FFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVE--- 2424
F L T+++ D+A+ GAA S + F D+ P S+ + +
Sbjct: 357 AFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRP-FKFEDIHPYSVSYSWDKQVEDEDH 415
Query: 2425 -KIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAG 2483
++ ++ P + D A + + +AN+E+ +
Sbjct: 416 MEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQ 473
Query: 2484 R-ARIKVTYQVDADGLLSI----------FAYEKISGKKKFITIK 2517
+K+ + D GL +I + + KK +TI
Sbjct: 474 DSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIV 518
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 318 bits (817), Expect = 4e-97
Identities = 153/387 (39%), Positives = 219/387 (56%), Gaps = 35/387 (9%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64
Query: 700 TISSIKRFIARDLKNINTNS----FPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLK 754
T+ +IKR I R ++ P+ G ++ +P +ISA++ +K
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 124
Query: 755 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
K AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK
Sbjct: 125 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 184
Query: 815 IFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 870
AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V+
Sbjct: 185 TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEE- 243
Query: 871 FLKK----LSYKDVNILMIKSREIKEL-------LSYQSSVKLNVKL-------SDKKIV 912
F K L D + R +KE LS S+ + +V L + K +
Sbjct: 244 FKKDQGIDLR-NDP---LAMQR-LKEAAEKAKIELS--SAQQTDVNLPYITADATGPKHM 296
Query: 913 NITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF 972
NI + + ++ + LVNR+I L AL DA L++ DI++VILVGG TRM + + V+ F
Sbjct: 297 NIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEF 356
Query: 973 FKTTLLTSIDPDKAVVFGAAIQANFLS 999
F ++PD+AV GAA+Q L+
Sbjct: 357 FGKEPRKDVNPDEAVAIGAAVQGGVLT 383
Score = 318 bits (817), Expect = 4e-97
Identities = 153/387 (39%), Positives = 219/387 (56%), Gaps = 35/387 (9%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64
Query: 2096 TISSIKRFIARDLKNINTNS----FPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLK 2150
T+ +IKR I R ++ P+ G ++ +P +ISA++ +K
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 124
Query: 2151 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
K AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK
Sbjct: 125 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 184
Query: 2211 IFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 2266
AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V+
Sbjct: 185 TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEE- 243
Query: 2267 FLKK----LSYKDVNILMIKSREIKEL-------LSYQSSVKLNVKL-------SDKKIV 2308
F K L D + R +KE LS S+ + +V L + K +
Sbjct: 244 FKKDQGIDLR-NDP---LAMQR-LKEAAEKAKIELS--SAQQTDVNLPYITADATGPKHM 296
Query: 2309 NITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF 2368
NI + + ++ + LVNR+I L AL DA L++ DI++VILVGG TRM + + V+ F
Sbjct: 297 NIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEF 356
Query: 2369 FKTTLLTSIDPDKAVVFGAAIQANFLS 2395
F ++PD+AV GAA+Q L+
Sbjct: 357 FGKEPRKDVNPDEAVAIGAAVQGGVLT 383
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 291 bits (748), Expect = 9e-88
Identities = 154/390 (39%), Positives = 228/390 (58%), Gaps = 30/390 (7%)
Query: 632 SVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKI 691
V+N IGID GTT S VA+++N E+L ++ G + PS V + D + +G AK
Sbjct: 13 DVENYGTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFT-DDERLIGDAAKN 71
Query: 692 TQNIDPKNTISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIK-TISGIK- 740
+P+NTI IKR I D+K+ P++ NK G ++ ++ G K
Sbjct: 72 QVAANPQNTIFDIKRLIGLKYNDRSVQKDIKH-----LPFNVVNKDGKPAVEVSVKGEKK 126
Query: 741 --SPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRL 798
+P EIS I +K+IAE+ + ++ AV+TVPAYFND QRQ TK+A +AGLNVLR+
Sbjct: 127 VFTPEEISGMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRI 186
Query: 799 LNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDF 858
+NEPT+AAIAY LDK+ E VYDLGGGTFD+S+L +NGVF+V + GD++LGG+DF
Sbjct: 187 VNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDF 246
Query: 859 DYCLFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKLNV-KLSDKK 910
DY + ++K F KK DV N + K + K LS Q S ++ + D
Sbjct: 247 DYKIVRQLIKA-FKKKHG-IDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGI 304
Query: 911 IVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVS 970
++ T+ +F + L +T+ K L D+ L KD+++++LVGGSTR+ + + +
Sbjct: 305 DLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLE 364
Query: 971 NFFK-TTLLTSIDPDKAVVFGAAIQANFLS 999
++F I+PD+AV +GAA+QA LS
Sbjct: 365 SYFDGKKASKGINPDEAVAYGAAVQAGVLS 394
Score = 291 bits (748), Expect = 9e-88
Identities = 154/390 (39%), Positives = 228/390 (58%), Gaps = 30/390 (7%)
Query: 2028 SVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKI 2087
V+N IGID GTT S VA+++N E+L ++ G + PS V + D + +G AK
Sbjct: 13 DVENYGTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFT-DDERLIGDAAKN 71
Query: 2088 TQNIDPKNTISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIK-TISGIK- 2136
+P+NTI IKR I D+K+ P++ NK G ++ ++ G K
Sbjct: 72 QVAANPQNTIFDIKRLIGLKYNDRSVQKDIKH-----LPFNVVNKDGKPAVEVSVKGEKK 126
Query: 2137 --SPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRL 2194
+P EIS I +K+IAE+ + ++ AV+TVPAYFND QRQ TK+A +AGLNVLR+
Sbjct: 127 VFTPEEISGMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRI 186
Query: 2195 LNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDF 2254
+NEPT+AAIAY LDK+ E VYDLGGGTFD+S+L +NGVF+V + GD++LGG+DF
Sbjct: 187 VNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDF 246
Query: 2255 DYCLFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKLNV-KLSDKK 2306
DY + ++K F KK DV N + K + K LS Q S ++ + D
Sbjct: 247 DYKIVRQLIKA-FKKKHG-IDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGI 304
Query: 2307 IVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVS 2366
++ T+ +F + L +T+ K L D+ L KD+++++LVGGSTR+ + + +
Sbjct: 305 DLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLE 364
Query: 2367 NFFK-TTLLTSIDPDKAVVFGAAIQANFLS 2395
++F I+PD+AV +GAA+QA LS
Sbjct: 365 SYFDGKKASKGINPDEAVAYGAAVQAGVLS 394
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 286 bits (734), Expect = 8e-86
Identities = 143/398 (35%), Positives = 212/398 (53%), Gaps = 33/398 (8%)
Query: 629 DDISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKK 688
+ +IGID GTT S V + ++ E++ + G PS V + D + +G
Sbjct: 15 TENLYFQSMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF-TDTERLIGDA 73
Query: 689 AKITQNIDPKNTISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIK-TISG 738
AK ++P NTI KR I R D+K+ +P+ ++ G ++ G
Sbjct: 74 AKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKH-----WPFRVVSEGGKPKVQVEYKG 128
Query: 739 IK---SPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 795
P EIS+ + +K+IAE + ++ AVITVPAYFND QRQ TK+A + GLNV
Sbjct: 129 ETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNV 188
Query: 796 LRLLNEPTSAAIAYKLDKNIF---EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSN 852
LR++NEPT+AAIAY LDK E ++DLGGGTFD+SIL ++G+F+V S GD++
Sbjct: 189 LRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH 248
Query: 853 LGGDDFDYCLFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKLNV- 904
LGG+DFD + S + + F +K KD+ + + R K LS + + +
Sbjct: 249 LGGEDFDNRMVSHLAEE-FKRK-HKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEID 306
Query: 905 KLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKH 964
L + +I +F + L T+ KAL DA L I ++LVGGSTR+
Sbjct: 307 SLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPK 366
Query: 965 IHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGN 1001
I + + +FF L SI+PD+AV +GAA+QA L G+
Sbjct: 367 IQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
Score = 286 bits (734), Expect = 8e-86
Identities = 143/398 (35%), Positives = 212/398 (53%), Gaps = 33/398 (8%)
Query: 2025 DDISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKK 2084
+ +IGID GTT S V + ++ E++ + G PS V + D + +G
Sbjct: 15 TENLYFQSMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF-TDTERLIGDA 73
Query: 2085 AKITQNIDPKNTISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIK-TISG 2134
AK ++P NTI KR I R D+K+ +P+ ++ G ++ G
Sbjct: 74 AKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKH-----WPFRVVSEGGKPKVQVEYKG 128
Query: 2135 IK---SPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 2191
P EIS+ + +K+IAE + ++ AVITVPAYFND QRQ TK+A + GLNV
Sbjct: 129 ETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNV 188
Query: 2192 LRLLNEPTSAAIAYKLDKNIF---EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSN 2248
LR++NEPT+AAIAY LDK E ++DLGGGTFD+SIL ++G+F+V S GD++
Sbjct: 189 LRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH 248
Query: 2249 LGGDDFDYCLFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKLNV- 2300
LGG+DFD + S + + F +K KD+ + + R K LS + + +
Sbjct: 249 LGGEDFDNRMVSHLAEE-FKRK-HKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEID 306
Query: 2301 KLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKH 2360
L + +I +F + L T+ KAL DA L I ++LVGGSTR+
Sbjct: 307 SLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPK 366
Query: 2361 IHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGN 2397
I + + +FF L SI+PD+AV +GAA+QA L G+
Sbjct: 367 IQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A
{Coxiella burnetii}
Length = 247
Score = 228 bits (583), Expect = 9e-68
Identities = 77/210 (36%), Positives = 125/210 (59%), Gaps = 10/210 (4%)
Query: 1206 DAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
DAKRGK+ T+++RE+ VA G + D+N +LR ++KA AN+PK+ I RAI++
Sbjct: 21 DAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKR--GAG 78
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFK 1324
N +EVRYEGY +G A++VDC+T+N+ RTV+ +R+ F+K GNL EGSV ++FK
Sbjct: 79 SGAGDNLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFK 138
Query: 1325 HCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAE 1384
G + F PN+ + ++++ALE GAED + D I + T P F +I+N+++
Sbjct: 139 QRGLITFPPNSDEEKIMEIALEVGAEDVTTNDDGSIDVTTLPEDFEKIRNAMKAADLNPS 198
Query: 1385 SSGIVMRPYTNIVFKDATTPIDPRVVDKMI 1414
+ + + T +D ++M+
Sbjct: 199 HAEVTVLAST-------EVGLDKDSAEQML 221
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston
bacterial structural genomics initiative, BSGI,
structural genomics; 2.20A {Escherichia coli} SCOP:
e.39.1.1
Length = 249
Score = 224 bits (573), Expect = 2e-66
Identities = 76/210 (36%), Positives = 125/210 (59%), Gaps = 11/210 (5%)
Query: 1206 DAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
DAKRGKI T+I+REL A G +PD N +LR A++KAL N+ ++ + RAI +
Sbjct: 21 DAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGG- 79
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFK 1324
+++ N + YEGY G AI+++C+++NR RTV+ +R+ F+K GGNL +GSV ++F
Sbjct: 80 -DDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFS 138
Query: 1325 HCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAE 1384
G + F ++T+++ ALE GAED + D I + T+ + +++++LE G KA+
Sbjct: 139 KKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKAD 197
Query: 1385 SSGIVMRPYTNIVFKDATTPIDPRVVDKMI 1414
S+ + M P T +D K++
Sbjct: 198 SAEVSMIPST-------KADMDAETAPKLM 220
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural
genomics, BSGC structure funded by NIH, protein structure
initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Length = 249
Score = 218 bits (559), Expect = 2e-64
Identities = 75/198 (37%), Positives = 112/198 (56%), Gaps = 5/198 (2%)
Query: 1206 DAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
DA+RGK+ ++++RE+ VA G NP+ N +LR AIE+A AN+P NI RAI+K
Sbjct: 18 DAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIERAIKK--GAG 75
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFK 1324
+ E + EV YEGY+ G A++V T+NR RT S +R++F K+GGNL G V ++F+
Sbjct: 76 ELEGEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFE 135
Query: 1325 HCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKA 1383
G + + LL+ A+E GAED + I T P + E+K +LE G
Sbjct: 136 RKGYIEVPAKEVSEEELLEKAIEVGAEDV-QPGEEVHIIYTVPEELYEVKENLEKLGVPI 194
Query: 1384 ESSGIVMRPYTNIVFKDA 1401
E + I +P + + D
Sbjct: 195 EKAQITWKPISTVQINDE 212
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Helicobacter pylori} SCOP:
e.39.1.1
Length = 240
Score = 208 bits (531), Expect = 1e-60
Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 20/217 (9%)
Query: 1206 DAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
K K+ ++ + + +A G PDTN KLR AI A N+PK+NI AI++ +
Sbjct: 16 WDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRAS--- 72
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK-NGGNLSKEGSVLFMF 1323
++ N E+ YEG + G II++C+T+N RT++N+++ FNK G ++ GS+ FMF
Sbjct: 73 -SKEGNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMF 131
Query: 1324 KHCGQLLFLPNTKKN------TLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLE 1377
L N +N L ++ G E+ + ++KI I + F + E
Sbjct: 132 NRKSVFECLKNEVENLKLSLEDLEFALIDYGLEEL-EEVEDKIIIRGDYNSFKLLNEGFE 190
Query: 1378 MTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMI 1414
+ + T ++ ++
Sbjct: 191 SLKLPILKASLQRIATT-------PIELNDEQMELTE 220
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli}
SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 203 bits (520), Expect = 2e-59
Identities = 74/123 (60%), Positives = 96/123 (78%)
Query: 1011 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNC 1070
+DVIPLSLG+ET+GGLVEK+I RNTTIP + + +FTTFKD QTA++I V+QGE ELV++C
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 1071 QVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDE 1130
+ LA F LR IP +PAG A I+VT+QVDADGLLS+ A EK +G + I +KP Y + E
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Query: 1131 IKN 1133
I +
Sbjct: 121 IAS 123
Score = 203 bits (520), Expect = 2e-59
Identities = 74/123 (60%), Positives = 96/123 (78%)
Query: 2407 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNC 2466
+DVIPLSLG+ET+GGLVEK+I RNTTIP + + +FTTFKD QTA++I V+QGE ELV++C
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 2467 QVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDE 2526
+ LA F LR IP +PAG A I+VT+QVDADGLLS+ A EK +G + I +KP Y + E
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Query: 2527 IKN 2529
I +
Sbjct: 121 IAS 123
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron,
biosynthesis, [2Fe-2S], asymmetric trimer, three
conserved Cys; 2.30A {Aquifex aeolicus}
Length = 157
Score = 166 bits (423), Expect = 2e-47
Identities = 61/131 (46%), Positives = 76/131 (58%), Gaps = 21/131 (16%)
Query: 373 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVN-KNGVITDAKFK 431
Y+EKVLDH+ NPRNVGV E + G G G PACG M IKVN +N VI D +FK
Sbjct: 3 FEYNEKVLDHFLNPRNVGVLEDAN---GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFK 59
Query: 432 TYGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV---------------TKKAAK 476
T+GCGSAIA SS++TE VKGK + A+++ DI EEL T A
Sbjct: 60 TFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVA- 118
Query: 477 YINKYIQKRGK 487
I Y+ K+G+
Sbjct: 119 -IKDYLMKQGR 128
Score = 166 bits (423), Expect = 2e-47
Identities = 61/131 (46%), Positives = 76/131 (58%), Gaps = 21/131 (16%)
Query: 1769 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVN-KNGVITDAKFK 1827
Y+EKVLDH+ NPRNVGV E + G G G PACG M IKVN +N VI D +FK
Sbjct: 3 FEYNEKVLDHFLNPRNVGVLEDAN---GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFK 59
Query: 1828 TYGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV---------------TKKAAK 1872
T+GCGSAIA SS++TE VKGK + A+++ DI EEL T A
Sbjct: 60 TFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVA- 118
Query: 1873 YINKYIQKRGK 1883
I Y+ K+G+
Sbjct: 119 -IKDYLMKQGR 128
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics,
montreal-kings bacterial structural genomics initiative,
BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A
2kqk_A 1q48_A 1r9p_A 1wfz_A
Length = 129
Score = 164 bits (418), Expect = 3e-47
Identities = 80/95 (84%), Positives = 87/95 (91%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
YSEKV+DHYENPRNVG F+ ND VG+GMVGAPACGDVMKLQIKVN G+I DA+FKTYG
Sbjct: 4 YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYG 63
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 469
CGSAIASSSLVTEWVKGK+LDEA +IKNTDIAEEL
Sbjct: 64 CGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEEL 98
Score = 164 bits (418), Expect = 3e-47
Identities = 80/95 (84%), Positives = 87/95 (91%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
YSEKV+DHYENPRNVG F+ ND VG+GMVGAPACGDVMKLQIKVN G+I DA+FKTYG
Sbjct: 4 YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYG 63
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 1865
CGSAIASSSLVTEWVKGK+LDEA +IKNTDIAEEL
Sbjct: 64 CGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEEL 98
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein
complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus}
PDB: 4eb7_C*
Length = 153
Score = 158 bits (402), Expect = 9e-45
Identities = 56/128 (43%), Positives = 73/128 (57%), Gaps = 21/128 (16%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
YS+KV DH++NPRNVG E D G G VG P CGD+M + IKV + I D KF+T+G
Sbjct: 2 YSDKVFDHFQNPRNVGKIEDAD---GVGTVGNPVCGDLMTIYIKVK-DNRIEDIKFQTFG 57
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV---------------TKKAAKYIN 479
C +AIA+SS+ TE KGKT++EA+ I +AE L + A I
Sbjct: 58 CAAAIATSSMATEMAKGKTIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRA--IV 115
Query: 480 KYIQKRGK 487
Y +K GK
Sbjct: 116 DYFRKNGK 123
Score = 158 bits (402), Expect = 9e-45
Identities = 56/128 (43%), Positives = 73/128 (57%), Gaps = 21/128 (16%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
YS+KV DH++NPRNVG E D G G VG P CGD+M + IKV + I D KF+T+G
Sbjct: 2 YSDKVFDHFQNPRNVGKIEDAD---GVGTVGNPVCGDLMTIYIKVK-DNRIEDIKFQTFG 57
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV---------------TKKAAKYIN 1875
C +AIA+SS+ TE KGKT++EA+ I +AE L + A I
Sbjct: 58 CAAAIATSSMATEMAKGKTIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRA--IV 115
Query: 1876 KYIQKRGK 1883
Y +K GK
Sbjct: 116 DYFRKNGK 123
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 160 bits (407), Expect = 1e-42
Identities = 54/383 (14%), Positives = 126/383 (32%), Gaps = 44/383 (11%)
Query: 5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIY-GWTAEKAIEKARNEVAQLIYADPREIIW 63
+ ++ + + N++ + + D
Sbjct: 17 TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARV 74
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNN 121
T+GA E+ + K+ ++ + H S + E G + + +
Sbjct: 75 TNGAREAKFAVMHS----LAKKDAWVVMDENCHYSSYVAA---ERAGLNIALVPKTDYPD 127
Query: 122 GLITLSQLEEKICSDT-----ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
IT + I +L + + G + + +I ++C V + A A
Sbjct: 128 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYA 187
Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKG-IGALYIRRNPRTRIEAQIHG----GGHEYGL 231
+G++ ++++ D + S HK G IG + ++ E + E L
Sbjct: 188 IGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE---WAEIVLRRSEKYKNKEVEL 244
Query: 232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP 291
T I+ + +F R +K + + ++ ME + I GD P
Sbjct: 245 LGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAE--MEKL-GIKQLGD----NP 297
Query: 292 HNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 351
HN ++ F E + +I+ + E L++ + + F +
Sbjct: 298 HNHDLMFFHAEV------LYEISKKAKGGRFFLYRE----LKSRKIHGIKPGLTRYFKLS 347
Query: 352 RF-TTEKEIDFTIK-LLKMKEFF 372
+ +++E+D+ + ++ E +
Sbjct: 348 TYGLSDEEVDYVLNAFKEIIEKY 370
Score = 160 bits (407), Expect = 1e-42
Identities = 54/383 (14%), Positives = 126/383 (32%), Gaps = 44/383 (11%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIY-GWTAEKAIEKARNEVAQLIYADPREIIW 1459
+ ++ + + N++ + + D
Sbjct: 17 TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARV 74
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNN 1517
T+GA E+ + K+ ++ + H S + E G + + +
Sbjct: 75 TNGAREAKFAVMHS----LAKKDAWVVMDENCHYSSYVAA---ERAGLNIALVPKTDYPD 127
Query: 1518 GLITLSQLEEKICSDT-----ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 1572
IT + I +L + + G + + +I ++C V + A A
Sbjct: 128 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYA 187
Query: 1573 VGKIDINIQNYKVDLMSFSAHKIYGPKG-IGALYIRRNPRTRIEAQIHG----GGHEYGL 1627
+G++ ++++ D + S HK G IG + ++ E + E L
Sbjct: 188 IGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE---WAEIVLRRSEKYKNKEVEL 244
Query: 1628 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP 1687
T I+ + +F R +K + + ++ ME + I GD P
Sbjct: 245 LGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAE--MEKL-GIKQLGD----NP 297
Query: 1688 HNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 1747
HN ++ F E + +I+ + E L++ + + F +
Sbjct: 298 HNHDLMFFHAEV------LYEISKKAKGGRFFLYRE----LKSRKIHGIKPGLTRYFKLS 347
Query: 1748 RF-TTEKEIDFTIK-LLKMKEFF 1768
+ +++E+D+ + ++ E +
Sbjct: 348 TYGLSDEEVDYVLNAFKEIIEKY 370
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal
5'-phosphate, thiocystei aminoacrylate, enzyme-product
complex; HET: PDA; 1.55A {Synechocystis SP} SCOP:
c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Length = 390
Score = 156 bits (396), Expect = 7e-41
Identities = 70/398 (17%), Positives = 130/398 (32%), Gaps = 64/398 (16%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 61
++ + ++ + N ++ I + R +A+ DP I
Sbjct: 21 NFGGQGILPTVALEAITAMYGYLQENGPFSIAANQH-IQQLIAQLRQALAETFNVDPNTI 79
Query: 62 IWTSGATESNNLAIKGAAHFYK-KRGKHIITVQTEHKSVL---DSIRKLENDGFRVTYLK 117
T T ++ +G I+ EH ++ +I +R +
Sbjct: 80 TITDNVTTGCDI----VLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVA 135
Query: 118 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC----DA 173
N + L + T LV + + G + P+ EI +CR + D
Sbjct: 136 ATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDG 195
Query: 174 AQAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGG------ 226
AQ+ G + ++ +VD +F+ HK GP G+G LYI + I G
Sbjct: 196 AQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGA 255
Query: 227 -------HEYGLR--SGTLATHQIVGMGEAFR-LARIEMKEEL-KRILFLQKRLYNGLME 275
E G R T A Q G+ A + R EE + I + L+ GL +
Sbjct: 256 KGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ 315
Query: 276 SIEEIYINGDMNNRIPHNLNISFNFIEG----ESLLMAI--KDIAVSSGSACTSASLEPS 329
+ ++ + +SF ++ +++ + + I +
Sbjct: 316 -LPHVHCLATSAPQAG---LVSFT-VDSPLGHRAIVQKLEEQRIYL-------------- 356
Query: 330 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
R + IR T E+EI+ + L
Sbjct: 357 ---RTIA-----DPDCIRACCHYITDEEEINHLLARLA 386
Score = 152 bits (387), Expect = 1e-39
Identities = 70/395 (17%), Positives = 128/395 (32%), Gaps = 64/395 (16%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
+ ++ + N ++ I + R +A+ DP I T
Sbjct: 24 GQGILPTVALEAITAMYGYLQENGPFSIAANQH-IQQLIAQLRQALAETFNVDPNTITIT 82
Query: 1461 SGATESNNLAIKGAAHFYK-KRGKHIITVQTEHKSVL---DSIRKLENDGFRVTYLKPKN 1516
T ++ +G I+ EH ++ +I +R +
Sbjct: 83 DNVTTGCDI----VLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATL 138
Query: 1517 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC----DAAQA 1572
N + L + T LV + + G + P+ EI +CR + D AQ+
Sbjct: 139 NQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQS 198
Query: 1573 VGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGG--------- 1622
G + ++ +VD +F+ HK GP G+G LYI + I G
Sbjct: 199 AGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGE 258
Query: 1623 ----HEYGLR--SGTLATHQIVGMGEAFR-LARIEMKEEL-KRILFLQKRLYNGLMESIE 1674
E G R T A Q G+ A + R EE + I + L+ GL + +
Sbjct: 259 PTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ-LP 317
Query: 1675 EIYINGDMNNRIPHNLNISFNFIEG----ESLLMAI--KDIAVSSGSACTSASLEPSYVL 1728
++ + +SF ++ +++ + + I +
Sbjct: 318 HVHCLATSAPQAG---LVSFT-VDSPLGHRAIVQKLEEQRIYL----------------- 356
Query: 1729 RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763
R + IR T E+EI+ + L
Sbjct: 357 RTIA-----DPDCIRACCHYITDEEEINHLLARLA 386
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 141 bits (358), Expect = 5e-39
Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 3/132 (2%)
Query: 990 GAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFK 1049
G++ + + ++DV PLSLGIET+GG++ +I +NTTIP +S F+T +
Sbjct: 2 GSSHHHHHHGL---VPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAE 58
Query: 1050 DNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYE 1109
DNQ+A+ I V+QGE + + + L F L I P P G +I+VT+ +DADG+L + A +
Sbjct: 59 DNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKD 118
Query: 1110 KISGKKKFITIK 1121
K SGK++ ITIK
Sbjct: 119 KNSGKEQKITIK 130
Score = 141 bits (358), Expect = 5e-39
Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 3/132 (2%)
Query: 2386 GAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFK 2445
G++ + + ++DV PLSLGIET+GG++ +I +NTTIP +S F+T +
Sbjct: 2 GSSHHHHHHGL---VPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAE 58
Query: 2446 DNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYE 2505
DNQ+A+ I V+QGE + + + L F L I P P G +I+VT+ +DADG+L + A +
Sbjct: 59 DNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKD 118
Query: 2506 KISGKKKFITIK 2517
K SGK++ ITIK
Sbjct: 119 KNSGKEQKITIK 130
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 143 bits (362), Expect = 8e-39
Identities = 55/125 (44%), Positives = 83/125 (66%)
Query: 1009 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK 1068
+DV PLSLGIET+GG+ K+I RNTTIP S F+T D QT + IKV QGE E+
Sbjct: 21 QSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAG 80
Query: 1069 NCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNL 1128
+ ++L F L IPP P G +I+VT+ +DA+G++ + A +K +G+++ I I+ ++
Sbjct: 81 DNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSK 140
Query: 1129 DEIKN 1133
D+I+N
Sbjct: 141 DDIEN 145
Score = 143 bits (362), Expect = 8e-39
Identities = 55/125 (44%), Positives = 83/125 (66%)
Query: 2405 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK 2464
+DV PLSLGIET+GG+ K+I RNTTIP S F+T D QT + IKV QGE E+
Sbjct: 21 QSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAG 80
Query: 2465 NCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNL 2524
+ ++L F L IPP P G +I+VT+ +DA+G++ + A +K +G+++ I I+ ++
Sbjct: 81 DNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSK 140
Query: 2525 DEIKN 2529
D+I+N
Sbjct: 141 DDIEN 145
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A
{Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 141 bits (357), Expect = 1e-38
Identities = 51/110 (46%), Positives = 71/110 (64%)
Query: 1012 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 1071
DV L+LGIET GG++ +I RNT IP S F+T DNQ + IKV +GE + K+
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 1072 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 1121
+L FEL IPP P G +I+VT+ +DA+G+L + A +K +GK + ITI
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITIT 113
Score = 141 bits (357), Expect = 1e-38
Identities = 51/110 (46%), Positives = 71/110 (64%)
Query: 2408 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 2467
DV L+LGIET GG++ +I RNT IP S F+T DNQ + IKV +GE + K+
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 2468 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 2517
+L FEL IPP P G +I+VT+ +DA+G+L + A +K +GK + ITI
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITIT 113
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11,
peptide-binding domain, HS 2, protein structure
initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 141 bits (357), Expect = 1e-38
Identities = 51/110 (46%), Positives = 73/110 (66%)
Query: 1012 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 1071
DV PLSLGIET GG++ +I RNT IP FTT+ DNQ ++I+V +GE + ++
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 1072 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 1121
L FEL IPP P G +I+VT+ +DA+G+L++ A +K +GK ITI+
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQ 113
Score = 141 bits (357), Expect = 1e-38
Identities = 51/110 (46%), Positives = 73/110 (66%)
Query: 2408 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 2467
DV PLSLGIET GG++ +I RNT IP FTT+ DNQ ++I+V +GE + ++
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 2468 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 2517
L FEL IPP P G +I+VT+ +DA+G+L++ A +K +GK ITI+
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQ 113
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural
genomics, APC90014. 2, protein structure initiative;
1.85A {Caenorhabditis elegans}
Length = 152
Score = 140 bits (356), Expect = 2e-38
Identities = 48/110 (43%), Positives = 75/110 (68%)
Query: 1012 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 1071
DV PL+LGIET+GG++ K+I RNT IP S F+T D+Q+A++I + +GE +V +
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 1072 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 1121
L NF++ IPP P G +I+VT+++D +G+L + A +K +G K +TI
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTIT 113
Score = 140 bits (356), Expect = 2e-38
Identities = 48/110 (43%), Positives = 75/110 (68%)
Query: 2408 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 2467
DV PL+LGIET+GG++ K+I RNT IP S F+T D+Q+A++I + +GE +V +
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 2468 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 2517
L NF++ IPP P G +I+VT+++D +G+L + A +K +G K +TI
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTIT 113
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A
2bpr_A 1dg4_A
Length = 219
Score = 138 bits (349), Expect = 1e-36
Identities = 61/124 (49%), Positives = 86/124 (69%)
Query: 1009 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK 1068
LLLDV PLSLGIET+GG++ +I +NTTIP +S F+T +DNQ+A+ I V+QGE +
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAA 61
Query: 1069 NCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNL 1128
+ + L F L I P P G +I+VT+ +DADG+L + A +K SGK++ ITIK +N
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNE 121
Query: 1129 DEIK 1132
DEI+
Sbjct: 122 DEIQ 125
Score = 138 bits (349), Expect = 1e-36
Identities = 61/124 (49%), Positives = 86/124 (69%)
Query: 2405 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK 2464
LLLDV PLSLGIET+GG++ +I +NTTIP +S F+T +DNQ+A+ I V+QGE +
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAA 61
Query: 2465 NCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNL 2524
+ + L F L I P P G +I+VT+ +DADG+L + A +K SGK++ ITIK +N
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNE 121
Query: 2525 DEIK 2528
DEI+
Sbjct: 122 DEIQ 125
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70
protein, peptide-BIN domain, PSI-2, protein structure
initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 135 bits (341), Expect = 2e-36
Identities = 54/122 (44%), Positives = 84/122 (68%)
Query: 1012 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 1071
DV PLSLGIET+GG++ K+I RNTTIP S F+T D QT + IKV QGE E+ + +
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 1072 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
+L F L IPP P G +++VT+ +DA+G++++ A ++ +GK++ I I+ ++ D+I
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQI 123
Query: 1132 KN 1133
+N
Sbjct: 124 EN 125
Score = 135 bits (341), Expect = 2e-36
Identities = 54/122 (44%), Positives = 84/122 (68%)
Query: 2408 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 2467
DV PLSLGIET+GG++ K+I RNTTIP S F+T D QT + IKV QGE E+ + +
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 2468 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 2527
+L F L IPP P G +++VT+ +DA+G++++ A ++ +GK++ I I+ ++ D+I
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQI 123
Query: 2528 KN 2529
+N
Sbjct: 124 EN 125
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded
by NI protein structure initiative, PSI; 2.30A
{Streptococcus pyogenes} SCOP: d.224.1.2
Length = 159
Score = 134 bits (340), Expect = 3e-36
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
Y V DH + P + G + V + P CGDV+ L +K + I D F G
Sbjct: 10 YMAVVADHSKRPHHHGQLDG----VEAVQLNNPTCGDVISLTVKFD-EDKIEDIAFAGNG 64
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNT 463
C + ASSS++T+ V GK+ +EA+++ +
Sbjct: 65 CTISTASSSMMTDAVIGKSKEEALALADI 93
Score = 134 bits (340), Expect = 3e-36
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
Y V DH + P + G + V + P CGDV+ L +K + I D F G
Sbjct: 10 YMAVVADHSKRPHHHGQLDG----VEAVQLNNPTCGDVISLTVKFD-EDKIEDIAFAGNG 64
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNT 1859
C + ASSS++T+ V GK+ +EA+++ +
Sbjct: 65 CTISTASSSMMTDAVIGKSKEEALALADI 93
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 141 bits (357), Expect = 1e-35
Identities = 102/406 (25%), Positives = 164/406 (40%), Gaps = 60/406 (14%)
Query: 2 DYSATT--PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DP 58
D +AT+ P V++K++ Y N H A A E RN+VA+ I A P
Sbjct: 33 DNAATSQKPR--AVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSP 90
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI--------RKLENDG 110
REI++T ATE+ NL K G IIT EH S ++ + G
Sbjct: 91 REIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHS---NLVPWQMVAAKT----G 143
Query: 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH 170
+ +++ L + + T LV+V+ ++N +G + P EI +L G
Sbjct: 144 AVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVL 203
Query: 171 CDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ--IHGGG-- 226
DA Q+ +++Q D + S HK+ P GIG LY + +EA GGG
Sbjct: 204 VDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEE---ILEAMPPFFGGGEM 260
Query: 227 ----HEYG---------LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNG 272
+GT A + + +G A L + M+ + L L+ G
Sbjct: 261 IAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQG 320
Query: 273 LMESIEEIYINGDMNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASLE 327
L + I ++ + G SFN + G + ++ IA+ SG CT +
Sbjct: 321 LGQ-IPQLRLYGPNPKHGDRAALASFN-VAGLHASDVATMVDQDGIAIRSGHHCT----Q 374
Query: 328 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK-LLKMKEFF 372
P + R + S R ++ + T++EID ++ L FF
Sbjct: 375 P--LHRLFDAS-----GSARASLYFYNTKEEIDLFLQSLQATIRFF 413
Score = 140 bits (355), Expect = 3e-35
Identities = 98/393 (24%), Positives = 158/393 (40%), Gaps = 56/393 (14%)
Query: 1409 VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESN 1467
V++K++ Y N H A A E RN+VA+ I A PREI++T ATE+
Sbjct: 44 VLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAI 103
Query: 1468 NLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI--------RKLENDGFRVTYLKPKNNGL 1519
NL K G IIT EH S ++ + G + +++
Sbjct: 104 NLVAYSWGMNNLKAGDEIITTVMEHHS---NLVPWQMVAAKT----GAVLKFVQLDEQES 156
Query: 1520 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN 1579
L + + T LV+V+ ++N +G + P EI +L G DA Q+ ++
Sbjct: 157 FDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLD 216
Query: 1580 IQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ--IHGGG------HEYG----- 1626
+Q D + S HK+ P GIG LY + +EA GGG
Sbjct: 217 VQLIDCDWLVASGHKMCAPTGIGFLYGKEE---ILEAMPPFFGGGEMIAEVFFDHFTTGE 273
Query: 1627 ----LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGD 1681
+GT A + + +G A L + M+ + L L+ GL + I ++ + G
Sbjct: 274 LPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ-IPQLRLYGP 332
Query: 1682 MNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDE 1736
SFN + G + ++ IA+ SG CT +P + R +
Sbjct: 333 NPKHGDRAALASFN-VAGLHASDVATMVDQDGIAIRSGHHCT----QP--LHRLFDAS-- 383
Query: 1737 LAHSSIRFTIGRFTTEKEIDFTIK-LLKMKEFF 1768
S R ++ + T++EID ++ L FF
Sbjct: 384 ---GSARASLYFYNTKEEIDLFLQSLQATIRFF 413
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP:
d.15.4.1
Length = 111
Score = 130 bits (329), Expect = 2e-35
Identities = 50/89 (56%), Positives = 64/89 (71%), Gaps = 4/89 (4%)
Query: 2514 ITIKPFYNMNLDEIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF 2573
I I P ++ D GA+ NSG ++ DA L+N I IEHACEKSCAC TCH I+REGF
Sbjct: 4 IVILPHQDLCPD----GAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGF 59
Query: 2574 NEINKANEVEEDMLNKAWGLEENSRLSCQ 2602
+ + +++E E+DML+KAWGLE SRLSCQ
Sbjct: 60 DSLPESSEQEDDMLDKAWGLEPESRLSCQ 88
Score = 121 bits (307), Expect = 2e-32
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1118 ITIKPFYNMNLDEIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF 1177
I I P ++ D GA+ NSG ++ DA L+N I IEHACEKSCAC TCH I+REGF
Sbjct: 4 IVILPHQDLCPD----GAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGF 59
Query: 1178 NEINKANEVEEDMLNKAWGLEENSRLS 1204
+ + +++E E+DML+KAWGLE SRLS
Sbjct: 60 DSLPESSEQEDDMLDKAWGLEPESRLS 86
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding,
iron-sulfur cluster binding, three conserved Cys, three
beta strands; 1.85A {Thermus thermophilus}
Length = 138
Score = 130 bits (329), Expect = 4e-35
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
Y E +LDHY++PRN GV + G P+CGD +++ + + I D +F+ G
Sbjct: 8 YREILLDHYQSPRNFGVLPQATKQAG---GMNPSCGDQVEVMVLLE-GDTIADIRFQGQG 63
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 469
C + AS+SL+TE VKGK + EA+ + A +
Sbjct: 64 CAISTASASLMTEAVKGKKVAEALELSRKFQAMVV 98
Score = 130 bits (329), Expect = 4e-35
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
Y E +LDHY++PRN GV + G P+CGD +++ + + I D +F+ G
Sbjct: 8 YREILLDHYQSPRNFGVLPQATKQAG---GMNPSCGDQVEVMVLLE-GDTIADIRFQGQG 63
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 1865
C + AS+SL+TE VKGK + EA+ + A +
Sbjct: 64 CAISTASASLMTEAVKGKKVAEALELSRKFQAMVV 98
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes
pseudomonas, metal binding protein; 1.90A {Pseudomonas
putida}
Length = 113
Score = 128 bits (323), Expect = 1e-34
Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 2529 NGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLN 2588
G G ++ + + I +E AC AC TCH I+R+GF+ + +A+E+EEDML+
Sbjct: 15 EGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLD 74
Query: 2589 KAWGLEENSRLSCQ 2602
KAWGLE SRL CQ
Sbjct: 75 KAWGLEAQSRLGCQ 88
Score = 120 bits (302), Expect = 9e-32
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 1133 NGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLN 1192
G G ++ + + I +E AC AC TCH I+R+GF+ + +A+E+EEDML+
Sbjct: 15 EGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLD 74
Query: 1193 KAWGLEENSRLS 1204
KAWGLE SRL
Sbjct: 75 KAWGLEAQSRLG 86
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 135 bits (342), Expect = 1e-33
Identities = 62/404 (15%), Positives = 130/404 (32%), Gaps = 69/404 (17%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 61
D A I V + R + H + ++ AR VA L+ ADP +
Sbjct: 31 DAPAGMLIPDSVATTVSTAFRRSGASTVGA-HPSARRSAAVLDAAREAVADLVNADPGGV 89
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLK-PK 119
+ + +L + ++ G +I + + ++ + + G +V + +
Sbjct: 90 VLGADRAVLLSLLAEASSSRAGL-GYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDI 148
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
G + Q E I T LV+V + +G + + + +L G + D + A
Sbjct: 149 ETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPY 208
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRR---------------NPRTRIEAQIHG 224
++I+ D+++ +AH GP ++ R+E
Sbjct: 209 RLLDIRETDADVVTVNAHAWGGPPIGAMVFRDPSVMNSFGSVSTNPYATGPARLEI---- 264
Query: 225 GGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILF--------------LQKRL 269
G + G+ + LA ++ R + L
Sbjct: 265 ---------GVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYL 315
Query: 270 YNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE-----SLLMAIKDI-AVSSGSACTS 323
L S+ + + G +IP +SF + +A I A+++ +
Sbjct: 316 MVSL-RSLPLVMLIGRPEAQIP---VVSFA-VHKVPADRVVQRLADNGILAIANTGSRV- 369
Query: 324 ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
VL ++ + ++T E+D ++ L
Sbjct: 370 ---LD--VLGVNDVG-----GAVTVGLAHYSTMAEVDQLVRALA 403
Score = 134 bits (339), Expect = 2e-33
Identities = 61/401 (15%), Positives = 129/401 (32%), Gaps = 69/401 (17%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
A I V + R + H + ++ AR VA L+ ADP ++
Sbjct: 34 AGMLIPDSVATTVSTAFRRSGASTVGA-HPSARRSAAVLDAAREAVADLVNADPGGVVLG 92
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLK-PKNNG 1518
+ +L + ++ G +I + + ++ + + G +V + + G
Sbjct: 93 ADRAVLLSLLAEASSSRAGL-GYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETG 151
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
+ Q E I T LV+V + +G + + + +L G + D + A +
Sbjct: 152 ELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLL 211
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRR---------------NPRTRIEAQIHGGGH 1623
+I+ D+++ +AH GP ++ R+E
Sbjct: 212 DIRETDADVVTVNAHAWGGPPIGAMVFRDPSVMNSFGSVSTNPYATGPARLEI------- 264
Query: 1624 EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILF--------------LQKRLYNG 1668
G + G+ + LA ++ R + L
Sbjct: 265 ------GVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVS 318
Query: 1669 LMESIEEIYINGDMNNRIPHNLNISFNFIEGE-----SLLMAIKDI-AVSSGSACTSASL 1722
L S+ + + G +IP +SF + +A I A+++ +
Sbjct: 319 L-RSLPLVMLIGRPEAQIP---VVSFA-VHKVPADRVVQRLADNGILAIANTGSRV---- 369
Query: 1723 EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763
VL ++ + ++T E+D ++ L
Sbjct: 370 LD--VLGVNDVG-----GAVTVGLAHYSTMAEVDQLVRALA 403
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur,
zinc, northeast structural genomics consortium, NESG;
NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Length = 147
Score = 124 bits (314), Expect = 6e-33
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 5/89 (5%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
Y + ++DHY+NPRN GV + + P CGD ++L +K++ ++ DAKF+ G
Sbjct: 11 YRQVIMDHYKNPRNKGVLNDSI----VVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEG 65
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNT 463
C ++AS+S++T+ +KGK ++ A+S+
Sbjct: 66 CSISMASASMMTQAIKGKDIETALSMSKI 94
Score = 124 bits (314), Expect = 6e-33
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 5/89 (5%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
Y + ++DHY+NPRN GV + + P CGD ++L +K++ ++ DAKF+ G
Sbjct: 11 YRQVIMDHYKNPRNKGVLNDSI----VVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEG 65
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNT 1859
C ++AS+S++T+ +KGK ++ A+S+
Sbjct: 66 CSISMASASMMTQAIKGKDIETALSMSKI 94
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural PSI, protein structure initiative;
HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB:
1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Length = 406
Score = 132 bits (335), Expect = 8e-33
Identities = 87/407 (21%), Positives = 152/407 (37%), Gaps = 65/407 (15%)
Query: 2 DYSATT--PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DP 58
D +A+ P +V+D + R + H A + +E R + I A
Sbjct: 28 DSAASAQKPS--QVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSA 85
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI--------RKLENDG 110
E+++ G TE NL + + G +II Q EH + +I R G
Sbjct: 86 EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHA---NIVPWQMLCARV----G 138
Query: 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH 170
+ + +G + L L T L+++ V+N +G P+ E+ L G
Sbjct: 139 AELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVL 198
Query: 171 CDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ--IHGGGH- 227
D AQAV +++Q D FS HK+YGP GIG LY++ ++ GGG
Sbjct: 199 VDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEA---LLQEMPPWEGGGSM 255
Query: 228 ----EYGLRS-----------GTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYN 271
+ GT T I+G+G A ++ + + + L +
Sbjct: 256 IATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALS 315
Query: 272 GLMESIEEIYINGDMNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASL 326
L + ++ + G NR+ I+FN + + IAV +G C
Sbjct: 316 QLES-VPDLTLYGP-QNRLG---VIAFN-LGKHHAYDVGSFLDNYGIAVRTGHHCA---- 365
Query: 327 EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK-LLKMKEFF 372
P ++ + R ++ + T +E+D + L ++
Sbjct: 366 MP--LMAYYNVP-----AMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405
Score = 132 bits (334), Expect = 1e-32
Identities = 84/394 (21%), Positives = 146/394 (37%), Gaps = 61/394 (15%)
Query: 1409 VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESN 1467
V+D + R + H A + +E R + I A E+++ G TE
Sbjct: 39 VIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGI 98
Query: 1468 NLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI--------RKLENDGFRVTYLKPKNNGL 1519
NL + + G +II Q EH + +I R G + + +G
Sbjct: 99 NLVANSWGNSNVRAGDNIIISQMEHHA---NIVPWQMLCARV----GAELRVIPLNPDGT 151
Query: 1520 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN 1579
+ L L T L+++ V+N +G P+ E+ L G D AQAV ++
Sbjct: 152 LQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVD 211
Query: 1580 IQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ--IHGGGH-----EYGLRS--- 1629
+Q D FS HK+YGP GIG LY++ ++ GGG +
Sbjct: 212 VQALDCDFYVFSGHKLYGPTGIGILYVKEA---LLQEMPPWEGGGSMIATVSLSEGTTWT 268
Query: 1630 --------GTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYING 1680
GT T I+G+G A ++ + + + L + L + ++ + G
Sbjct: 269 KAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYG 327
Query: 1681 DMNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASLEPSYVLRALGCND 1735
NR+ I+FN + + IAV +G C P ++
Sbjct: 328 P-QNRLG---VIAFN-LGKHHAYDVGSFLDNYGIAVRTGHHCA----MP--LMAYYNVP- 375
Query: 1736 ELAHSSIRFTIGRFTTEKEIDFTIK-LLKMKEFF 1768
+ R ++ + T +E+D + L ++
Sbjct: 376 ----AMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur,
iron, transport, ferredoxin, adrenodoxin-like, electron
transport; 2.60A {Schizosaccharomyces pombe}
Length = 103
Score = 110 bits (277), Expect = 2e-28
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 2536 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIR-EGFNEINKANEVEEDMLNKAWGLE 2594
N G S+ D N+I +E ACE S AC+TCHVI+ E + ++ E EEDML+ A+GLE
Sbjct: 21 NEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLE 80
Query: 2595 ENSRLSCQ 2602
E SRL CQ
Sbjct: 81 ETSRLGCQ 88
Score = 102 bits (256), Expect = 1e-25
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 1140 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIR-EGFNEINKANEVEEDMLNKAWGLE 1198
N G S+ D N+I +E ACE S AC+TCHVI+ E + ++ E EEDML+ A+GLE
Sbjct: 21 NEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLE 80
Query: 1199 ENSRLS 1204
E SRL
Sbjct: 81 ETSRLG 86
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport,
iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Length = 109
Score = 104 bits (262), Expect = 2e-26
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 2536 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 2594
G ++ ++ + +E ACE S AC+TCHV + E + + E E+DML+ A L+
Sbjct: 23 RVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQ 82
Query: 2595 ENSRLSCQ 2602
ENSRL CQ
Sbjct: 83 ENSRLGCQ 90
Score = 96.1 bits (240), Expect = 2e-23
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 1140 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 1198
G ++ ++ + +E ACE S AC+TCHV + E + + E E+DML+ A L+
Sbjct: 23 RVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQ 82
Query: 1199 ENSRLS 1204
ENSRL
Sbjct: 83 ENSRLG 88
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular
electron TRA electron transport, metal-binding; HET: RUA;
1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C*
2jqr_B* 3na0_C*
Length = 108
Score = 103 bits (260), Expect = 4e-26
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 2536 NSGISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWG 2592
G SL D +++N++ I+ ACE + AC+TCH+I + F ++ + E DML+ A+G
Sbjct: 24 KIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYG 83
Query: 2593 LEENSRLSCQ 2602
L + SRL CQ
Sbjct: 84 LTDRSRLGCQ 93
Score = 95.8 bits (239), Expect = 3e-23
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 1140 NSGISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWG 1196
G SL D +++N++ I+ ACE + AC+TCH+I + F ++ + E DML+ A+G
Sbjct: 24 KIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYG 83
Query: 1197 LEENSRLS 1204
L + SRL
Sbjct: 84 LTDRSRLG 91
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE
CHA cleavage, structural genomics; HET: HEM HC9; 2.17A
{Homo sapiens} PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B*
1cje_A
Length = 123
Score = 103 bits (259), Expect = 8e-26
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2536 NSGISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWG 2592
G SL D +++N++ I+ ACE + AC+TCH+I + + +++ + E DML+ A+G
Sbjct: 23 KVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYG 82
Query: 2593 LEENSRLSCQ 2602
L + SRL CQ
Sbjct: 83 LTDRSRLGCQ 92
Score = 95.5 bits (238), Expect = 6e-23
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 1140 NSGISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWG 1196
G SL D +++N++ I+ ACE + AC+TCH+I + + +++ + E DML+ A+G
Sbjct: 23 KVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYG 82
Query: 1197 LEENSRLS 1204
L + SRL
Sbjct: 83 LTDRSRLG 90
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein,
pseudo-symmetric motifs, metal transport; 2.30A
{Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Length = 118
Score = 97.7 bits (244), Expect = 8e-24
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 8/79 (10%)
Query: 458 MSIKNTDIAEELVTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKED 517
MSI ++ AA +N ++ RGKG GLRLGV GCSG++Y LE+VDE ED
Sbjct: 1 MSIT--------LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPED 52
Query: 518 QVFKLNGVQIFINEKDLLY 536
VF+ GV++ ++ K L +
Sbjct: 53 IVFEDKGVKVVVDGKSLQF 71
Score = 97.7 bits (244), Expect = 8e-24
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 8/79 (10%)
Query: 1854 MSIKNTDIAEELVTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKED 1913
MSI ++ AA +N ++ RGKG GLRLGV GCSG++Y LE+VDE ED
Sbjct: 1 MSIT--------LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPED 52
Query: 1914 QVFKLNGVQIFINEKDLLY 1932
VF+ GV++ ++ K L +
Sbjct: 53 IVFEDKGVKVVVDGKSLQF 71
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 105 bits (264), Expect = 1e-23
Identities = 50/334 (14%), Positives = 110/334 (32%), Gaps = 48/334 (14%)
Query: 12 RVVDKMIPYLRVQFGNPASRNHIY-GWTAEKAIEKARNEVAQLIYADPREIIWTSGATES 70
+ + + ++GN R+ GW E+ N +A LI A E++ T + +
Sbjct: 43 AALARAQAVIAEEWGNGLIRSWNSAGWRD--LSERLGNRLATLIGARDGEVVVTDTTSIN 100
Query: 71 NNLAIKGAAHFYK------KRGKHIITVQTEHKS---VLDSIRKLENDGFRVTYLKPKNN 121
+ + + I+T + + + + + + G+ + +
Sbjct: 101 LFKV---LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--- 154
Query: 122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 181
+L + I DT +V + VN + G + + + L G + D A + G +
Sbjct: 155 ----PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP 210
Query: 182 INIQNYKVDLMSFSAHKIY--GPKGIGALYIRRNPRTRIEAQIHGG-GHE---------- 228
+++ D +K GP +++ + + G GH
Sbjct: 211 VDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYE 270
Query: 229 -----YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYI 282
GT + + A+ +M ++ L L + + +
Sbjct: 271 PSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL 330
Query: 283 N----GDMNNRIPHNLNISFNFIEGESLLMAIKD 312
+ R H +SF EG +++ A+ D
Sbjct: 331 TLVTPREHAKRGSH---VSFEHPEGYAVIQALID 361
Score = 105 bits (264), Expect = 1e-23
Identities = 50/334 (14%), Positives = 110/334 (32%), Gaps = 48/334 (14%)
Query: 1408 RVVDKMIPYLRVQFGNPASRNHIY-GWTAEKAIEKARNEVAQLIYADPREIIWTSGATES 1466
+ + + ++GN R+ GW E+ N +A LI A E++ T + +
Sbjct: 43 AALARAQAVIAEEWGNGLIRSWNSAGWRD--LSERLGNRLATLIGARDGEVVVTDTTSIN 100
Query: 1467 NNLAIKGAAHFYK------KRGKHIITVQTEHKS---VLDSIRKLENDGFRVTYLKPKNN 1517
+ + + I+T + + + + + + G+ + +
Sbjct: 101 LFKV---LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--- 154
Query: 1518 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 1577
+L + I DT +V + VN + G + + + L G + D A + G +
Sbjct: 155 ----PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP 210
Query: 1578 INIQNYKVDLMSFSAHKIY--GPKGIGALYIRRNPRTRIEAQIHGG-GHE---------- 1624
+++ D +K GP +++ + + G GH
Sbjct: 211 VDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYE 270
Query: 1625 -----YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYI 1678
GT + + A+ +M ++ L L + + +
Sbjct: 271 PSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL 330
Query: 1679 N----GDMNNRIPHNLNISFNFIEGESLLMAIKD 1708
+ R H +SF EG +++ A+ D
Sbjct: 331 TLVTPREHAKRGSH---VSFEHPEGYAVIQALID 361
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 102 bits (255), Expect = 2e-23
Identities = 53/360 (14%), Positives = 114/360 (31%), Gaps = 45/360 (12%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+ ID G+TN + ++ S + + + G K ++ +
Sbjct: 3 VFIDDGSTNIKLQWQESDGT--------IKQHISPNSFKREWAVSFGDKKVFNYTLNGEQ 54
Query: 700 TISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAEN 759
A NI + Y N + H SG+ E+ I TL
Sbjct: 55 YSFDPISPDAVVTTNIA---WQYSDVNVVAVHHALLTSGL-PVSEVD--IVCTLPLTEYY 108
Query: 760 AVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGI 819
NN+ I + +++ T N + ++++ E A + + + +
Sbjct: 109 DRNNQPNTENI--ERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSL 166
Query: 820 FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKD 879
+ DLGG T DIS + + + + GDS+LG + +
Sbjct: 167 LII-DLGGTTLDISQV--MGKLSGISKIYGDSSLGVSLVTSAVKDAL------------- 210
Query: 880 VNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKA 939
+ S + + + D + I+ + +I +N + +
Sbjct: 211 --------SLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQR 262
Query: 940 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI---DPDKAVVFGAAIQAN 996
+++ +V+++GG + I + V + + +V G + N
Sbjct: 263 VLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIGN 320
Score = 102 bits (255), Expect = 2e-23
Identities = 53/360 (14%), Positives = 114/360 (31%), Gaps = 45/360 (12%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+ ID G+TN + ++ S + + + G K ++ +
Sbjct: 3 VFIDDGSTNIKLQWQESDGT--------IKQHISPNSFKREWAVSFGDKKVFNYTLNGEQ 54
Query: 2096 TISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAEN 2155
A NI + Y N + H SG+ E+ I TL
Sbjct: 55 YSFDPISPDAVVTTNIA---WQYSDVNVVAVHHALLTSGL-PVSEVD--IVCTLPLTEYY 108
Query: 2156 AVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGI 2215
NN+ I + +++ T N + ++++ E A + + + +
Sbjct: 109 DRNNQPNTENI--ERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSL 166
Query: 2216 FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKD 2275
+ DLGG T DIS + + + + GDS+LG + +
Sbjct: 167 LII-DLGGTTLDISQV--MGKLSGISKIYGDSSLGVSLVTSAVKDAL------------- 210
Query: 2276 VNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKA 2335
+ S + + + D + I+ + +I +N + +
Sbjct: 211 --------SLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQR 262
Query: 2336 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI---DPDKAVVFGAAIQAN 2392
+++ +V+++GG + I + V + + +V G + N
Sbjct: 263 VLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIGN 320
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal
transport; 2.70A {Escherichia coli}
Length = 145
Score = 95.9 bits (239), Expect = 7e-23
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 470 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 529
+T AA +I + + K+ +G+RLGV GC+G Y L+ V E K+D +F+ +G ++F+
Sbjct: 43 LTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFV 102
Query: 530 NEKDLLY 536
+ + +
Sbjct: 103 PLQAMPF 109
Score = 95.9 bits (239), Expect = 7e-23
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 1866 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 1925
+T AA +I + + K+ +G+RLGV GC+G Y L+ V E K+D +F+ +G ++F+
Sbjct: 43 LTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFV 102
Query: 1926 NEKDLLY 1932
+ + +
Sbjct: 103 PLQAMPF 109
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 99.2 bits (248), Expect = 1e-22
Identities = 48/258 (18%), Positives = 88/258 (34%), Gaps = 50/258 (19%)
Query: 738 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797
G+ + QI LK E + + +F A +P + + AGL ++
Sbjct: 65 GLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVT 124
Query: 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857
L++EP +AA A ++ V D+GGGT I++++ D GG
Sbjct: 125 LVDEPVAAARALGINDG------IVVDIGGGTTGIAVIEKGKITAT-----FDEPTGGTH 173
Query: 858 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 917
L K+ +++ + IK+ S + V+ +K+ I
Sbjct: 174 LSLVLAGSY-------KIPFEE-------AETIKKDFSRHREIMRVVRPVIEKMALIV-- 217
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
+ + + + T+ V +VGG+ + E S F +
Sbjct: 218 -------------------KEVIKNYDQTLP----VYVVGGTAYLTGFSEEFSRFLGKEV 254
Query: 978 LTSIDPDKAVVFGAAIQA 995
I P G A+
Sbjct: 255 QVPIHPLLVTPLGIALFG 272
Score = 99.2 bits (248), Expect = 1e-22
Identities = 48/258 (18%), Positives = 88/258 (34%), Gaps = 50/258 (19%)
Query: 2134 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 2193
G+ + QI LK E + + +F A +P + + AGL ++
Sbjct: 65 GLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVT 124
Query: 2194 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 2253
L++EP +AA A ++ V D+GGGT I++++ D GG
Sbjct: 125 LVDEPVAAARALGINDG------IVVDIGGGTTGIAVIEKGKITAT-----FDEPTGGTH 173
Query: 2254 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 2313
L K+ +++ + IK+ S + V+ +K+ I
Sbjct: 174 LSLVLAGSY-------KIPFEE-------AETIKKDFSRHREIMRVVRPVIEKMALIV-- 217
Query: 2314 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 2373
+ + + + T+ V +VGG+ + E S F +
Sbjct: 218 -------------------KEVIKNYDQTLP----VYVVGGTAYLTGFSEEFSRFLGKEV 254
Query: 2374 LTSIDPDKAVVFGAAIQA 2391
I P G A+
Sbjct: 255 QVPIHPLLVTPLGIALFG 272
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur,
metal-binding, electron transport; 2.01A
{Rhodopseudomonas palustris}
Length = 126
Score = 90.5 bits (225), Expect = 3e-21
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 2536 NSGISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGL 2593
G ++ +A ++N+I +E C +CACATCHV + E ++ + +EEDML+ + +
Sbjct: 39 EEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFGYDV 98
Query: 2594 EENSRLSCQ 2602
NSRLSCQ
Sbjct: 99 RPNSRLSCQ 107
Score = 82.4 bits (204), Expect = 3e-18
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 1140 NSGISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGL 1197
G ++ +A ++N+I +E C +CACATCHV + E ++ + +EEDML+ + +
Sbjct: 39 EEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFGYDV 98
Query: 1198 EENSRLS 1204
NSRLS
Sbjct: 99 RPNSRLS 105
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A
{Novosphingobium aromaticivorans}
Length = 104
Score = 87.6 bits (218), Expect = 2e-20
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2537 SGISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 2594
G+SL +AL I + C C+CATCHV++ + + + E D+L+ +
Sbjct: 19 PGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRT 78
Query: 2595 ENSRLSCQ 2602
+SRLSCQ
Sbjct: 79 PHSRLSCQ 86
Score = 79.5 bits (197), Expect = 1e-17
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 1141 SGISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 1198
G+SL +AL I + C C+CATCHV++ + + + E D+L+ +
Sbjct: 19 PGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRT 78
Query: 1199 ENSRLS 1204
+SRLS
Sbjct: 79 PHSRLS 84
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR
{Pseudomonas SP} SCOP: d.15.4.1
Length = 105
Score = 86.5 bits (215), Expect = 4e-20
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 2538 GISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKA-WGLE 2594
G SL + +N + I C SC CATC + I + + +AN E D+L +
Sbjct: 20 GQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMT 79
Query: 2595 ENSRLSCQ 2602
+RLSCQ
Sbjct: 80 AGTRLSCQ 87
Score = 78.0 bits (193), Expect = 4e-17
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 1142 GISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKA-WGLE 1198
G SL + +N + I C SC CATC + I + + +AN E D+L +
Sbjct: 20 GQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMT 79
Query: 1199 ENSRLS 1204
+RLS
Sbjct: 80 AGTRLS 85
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A
{Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A
1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C*
1put_A 1gpx_A
Length = 106
Score = 86.5 bits (215), Expect = 5e-20
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 2538 GISLCDALLKNSIF-IEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNK-AWGLE 2594
G+SL A + N I+ I C S +CATCHV + E +++ ANE E ML L+
Sbjct: 20 GVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELK 79
Query: 2595 ENSRLSCQ 2602
NSRL CQ
Sbjct: 80 PNSRLCCQ 87
Score = 78.0 bits (193), Expect = 4e-17
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 1142 GISLCDALLKNSIF-IEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNK-AWGLE 1198
G+SL A + N I+ I C S +CATCHV + E +++ ANE E ML L+
Sbjct: 20 GVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELK 79
Query: 1199 ENSRLS 1204
NSRL
Sbjct: 80 PNSRLC 85
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur,
iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP:
d.15.4.1 PDB: 1e9m_A
Length = 106
Score = 84.2 bits (209), Expect = 3e-19
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 2538 GISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGL-E 2594
G+++ +A N + I+ C +CAC+TCH + +++ KA E DM++ A+
Sbjct: 20 GLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNP 79
Query: 2595 ENSRLSCQ 2602
SRL+CQ
Sbjct: 80 ATSRLTCQ 87
Score = 75.7 bits (187), Expect = 2e-16
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 1142 GISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGL-E 1198
G+++ +A N + I+ C +CAC+TCH + +++ KA E DM++ A+
Sbjct: 20 GLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNP 79
Query: 1199 ENSRLS 1204
SRL+
Sbjct: 80 ATSRLT 85
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S
cluster, iron, iron-sulfur cluster protein, scaffold,
sulfur; 2.50A {Thermosynechococcus elongatus}
Length = 112
Score = 83.4 bits (207), Expect = 6e-19
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 470 VTKKAAKYINKYIQ---KRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQ 526
+T A + + + +RG+ LR+ V C Y L V E + D + + G
Sbjct: 4 LTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWT 63
Query: 527 IFINEKDLLY 536
I I +
Sbjct: 64 IAIAAEAAEL 73
Score = 83.4 bits (207), Expect = 6e-19
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 1866 VTKKAAKYINKYIQ---KRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQ 1922
+T A + + + +RG+ LR+ V C Y L V E + D + + G
Sbjct: 4 LTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWT 63
Query: 1923 IFINEKDLLY 1932
I I +
Sbjct: 64 IAIAAEAAEL 73
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein,
metalloprotein, oxidoreductase; 2.20A {Trichomonas
vaginalis} SCOP: d.15.4.1
Length = 93
Score = 78.0 bits (193), Expect = 3e-17
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 2536 NSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 2594
+L L + + + C+ + AC C K E+D
Sbjct: 17 EDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKH-----VSGKVAAAEDDEKEFLEDQP 71
Query: 2595 ENSRLSCQ 2602
N+RL+C
Sbjct: 72 ANARLACA 79
Score = 69.9 bits (172), Expect = 2e-14
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 1140 NSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 1198
+L L + + + C+ + AC C K E+D
Sbjct: 17 EDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKH-----VSGKVAAAEDDEKEFLEDQP 71
Query: 1199 ENSRLS 1204
N+RL+
Sbjct: 72 ANARLA 77
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; NMR {Allochromatium vinosum}
Length = 125
Score = 77.8 bits (192), Expect = 1e-16
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 470 VTKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 528
+T AA+ + K ++ G +G+ LRL + Y++ + D+ ++D GV+I
Sbjct: 25 LTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGF-DDLTEDDIRLTSEGVEIV 83
Query: 529 INEKDLLY 536
I +
Sbjct: 84 IAPDYVSL 91
Score = 77.8 bits (192), Expect = 1e-16
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 1866 VTKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 1924
+T AA+ + K ++ G +G+ LRL + Y++ + D+ ++D GV+I
Sbjct: 25 LTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGF-DDLTEDDIRLTSEGVEIV 83
Query: 1925 INEKDLLY 1932
I +
Sbjct: 84 IAPDYVSL 91
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 77.3 bits (190), Expect = 4e-16
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 539 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLE 598
D F S+ +Q A+V+ S +N+A+ L+ P +R+ YL L+G DL ++ + FL
Sbjct: 34 DKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLM 93
Query: 599 QQMKWRETLSIIKNKKDKVKFMALLQ 624
+Q++ RE L I+ KD+ + + ++
Sbjct: 94 EQLELREELDEIEQAKDEARLESFIK 119
Score = 77.3 bits (190), Expect = 4e-16
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 1935 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLE 1994
D F S+ +Q A+V+ S +N+A+ L+ P +R+ YL L+G DL ++ + FL
Sbjct: 34 DKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLM 93
Query: 1995 QQMKWRETLSIIKNKKDKVKFMALLQ 2020
+Q++ RE L I+ KD+ + + ++
Sbjct: 94 EQLELREELDEIEQAKDEARLESFIK 119
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase,
pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy
hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A
{Homo sapiens} PDB: 2hzp_A*
Length = 465
Score = 80.8 bits (199), Expect = 2e-15
Identities = 63/401 (15%), Positives = 120/401 (29%), Gaps = 72/401 (17%)
Query: 12 RVVDKMIPYLRVQFGNPASRNHIYGWTAE-KAIEKARNEVAQLIYADPREIIWTSGATES 70
V + L ++ A+ H G E + ++ A+ +EI + T +
Sbjct: 82 MVKTYLEEELD-KWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVN 140
Query: 71 NNLAIKGAAHFYKKRGKHIITVQTEHKS---VLDSIRKLENDGFRVT-YLKPKNNGLITL 126
+L + KR K I+ S ++S +L + + G TL
Sbjct: 141 LHLLMLSFFKPTPKRYK-ILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETL 199
Query: 127 S-----QLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 181
++ EK ++ V+ G I I + ++KG D A AVG ++
Sbjct: 200 RIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVE 259
Query: 182 INIQNYKVDLMSFSAHK--IYGPKGIGALYIRRNPRTRIE-AQIHGGGHEY--------- 229
+ + ++ VD + ++K G GI +I I+ A + GHE
Sbjct: 260 LYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNK 319
Query: 230 --------GLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEI 280
G R + + + + MK K+ + L L + + +
Sbjct: 320 LQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKD 379
Query: 281 YING-----------DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPS 329
+ R ++ F +
Sbjct: 380 KAATKKPVVNIITPSHVEERGCQ---LTITFSVPNKDVFQ-------------------- 416
Query: 330 YVLRALG--CNDELAHSSIRFTIGRF-TTEKEIDFTIKLLK 367
L G C D+ + IR + ++ LL
Sbjct: 417 -ELEKRGVVC-DKRNPNGIRVAPVPLYNSFHDVYKFTNLLT 455
Score = 80.8 bits (199), Expect = 2e-15
Identities = 63/401 (15%), Positives = 120/401 (29%), Gaps = 72/401 (17%)
Query: 1408 RVVDKMIPYLRVQFGNPASRNHIYGWTAE-KAIEKARNEVAQLIYADPREIIWTSGATES 1466
V + L ++ A+ H G E + ++ A+ +EI + T +
Sbjct: 82 MVKTYLEEELD-KWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVN 140
Query: 1467 NNLAIKGAAHFYKKRGKHIITVQTEHKS---VLDSIRKLENDGFRVT-YLKPKNNGLITL 1522
+L + KR K I+ S ++S +L + + G TL
Sbjct: 141 LHLLMLSFFKPTPKRYK-ILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETL 199
Query: 1523 S-----QLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 1577
++ EK ++ V+ G I I + ++KG D A AVG ++
Sbjct: 200 RIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVE 259
Query: 1578 INIQNYKVDLMSFSAHK--IYGPKGIGALYIRRNPRTRIE-AQIHGGGHEY--------- 1625
+ + ++ VD + ++K G GI +I I+ A + GHE
Sbjct: 260 LYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNK 319
Query: 1626 --------GLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEI 1676
G R + + + + MK K+ + L L + + +
Sbjct: 320 LQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKD 379
Query: 1677 YING-----------DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPS 1725
+ R ++ F +
Sbjct: 380 KAATKKPVVNIITPSHVEERGCQ---LTITFSVPNKDVFQ-------------------- 416
Query: 1726 YVLRALG--CNDELAHSSIRFTIGRF-TTEKEIDFTIKLLK 1763
L G C D+ + IR + ++ LL
Sbjct: 417 -ELEKRGVVC-DKRNPNGIRVAPVPLYNSFHDVYKFTNLLT 455
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 73.0 bits (179), Expect = 2e-14
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 539 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLE 598
DNF S+ D+ +V+ + +N AY LKDP R+ YL L GI++N + FL
Sbjct: 37 DNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQGIEMNAEQQTLQDPMFLM 96
Query: 599 QQMKWRETLSIIKNKKD 615
+QM+ RE L + D
Sbjct: 97 EQMELREELESVTACAD 113
Score = 73.0 bits (179), Expect = 2e-14
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 1935 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLE 1994
DNF S+ D+ +V+ + +N AY LKDP R+ YL L GI++N + FL
Sbjct: 37 DNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQGIEMNAEQQTLQDPMFLM 96
Query: 1995 QQMKWRETLSIIKNKKD 2011
+QM+ RE L + D
Sbjct: 97 EQMELREELESVTACAD 113
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 73.2 bits (179), Expect = 3e-14
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 536 YFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHD 595
D F Q+S+ ++D S K ST +N AY L P R +YL KL+GI++ + +
Sbjct: 73 VHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQ 132
Query: 596 FLEQQMKWRETLSIIKNKKDKVKFMALLQ 624
FL + M+ E L+ +++ + ++++
Sbjct: 133 FLIEIMEINEKLAEAESEAAMKEIESIVK 161
Score = 73.2 bits (179), Expect = 3e-14
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 1932 YFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHD 1991
D F Q+S+ ++D S K ST +N AY L P R +YL KL+GI++ + +
Sbjct: 73 VHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQ 132
Query: 1992 FLEQQMKWRETLSIIKNKKDKVKFMALLQ 2020
FL + M+ E L+ +++ + ++++
Sbjct: 133 FLIEIMEINEKLAEAESEAAMKEIESIVK 161
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein
structure initiative, NESG, reduced dimensionality PSI;
NMR {Aquifex aeolicus} SCOP: b.124.1.1
Length = 124
Score = 70.4 bits (173), Expect = 4e-14
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 470 VTKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 528
VT KA + I K Q+ + LR+ V GCSG Y + + D + D VF+ +GV++
Sbjct: 12 VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVV 71
Query: 529 INEKDLLY 536
I+ + Y
Sbjct: 72 IDPFSMPY 79
Score = 70.4 bits (173), Expect = 4e-14
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 1866 VTKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 1924
VT KA + I K Q+ + LR+ V GCSG Y + + D + D VF+ +GV++
Sbjct: 12 VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVV 71
Query: 1925 INEKDLLY 1932
I+ + Y
Sbjct: 72 IDPFSMPY 79
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.4 bits (187), Expect = 1e-13
Identities = 109/754 (14%), Positives = 208/754 (27%), Gaps = 270/754 (35%)
Query: 710 RDLKNINTNSFPYDFQNK---------FGMLHIKTISGIKSPIEISAQIFITLKKIAENA 760
+D+ ++ ++F +F K I I K + + ++F TL E
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 761 VNNRIFGAVITVPAY----------------------------FNDIQRQFTKNAAKLAG 792
V + V+ Y +ND Q F K
Sbjct: 79 V-QKFVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAK------- 128
Query: 793 LNVLR--LLNEPTSAAIAYKLDKNIFEGIFAVYDLGG-GTFDISILKFKNGVFKVLSVGG 849
NV R + A +L + + + + G G + + L V
Sbjct: 129 YNVSRLQPYLKLRQA--LLELRPA--KNVL-IDGVLGSGK---TWV--------ALDVCL 172
Query: 850 DSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDK 909
+ D+ +F W+ + + +L + + +
Sbjct: 173 SYKV-QCKMDFKIF-WLN----------------LKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 910 KIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGV 969
+ + ++K Q + R LL SK + L + ++ N K
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRR--LLKSKPYENCLLVLLNVQNA---------KAW---- 259
Query: 970 SNFFK---TTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGL 1026
N F LLT+ K V +FLS + + S+
Sbjct: 260 -NAFNLSCKILLTT--RFKQV-------TDFLSAATTTH-----ISLDHHSMT------- 297
Query: 1027 VEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANF---ELRDIPP 1083
T DE+ +L + +D+P
Sbjct: 298 ------------------LT----------------PDEVK---SLLLKYLDCRPQDLPR 320
Query: 1084 -----MPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNGAIFN 1138
P LSI A E I + T + ++N D++ I
Sbjct: 321 EVLTTNPR---------------RLSIIA-ESI--RDGLATWDNWKHVNCDKLTT-II-- 359
Query: 1139 ENSGISLCDALLKN-----SIFIEHACEKSCACATCHVIIREGFNEI---NKANEVEEDM 1190
E+S L A + S+F I + + +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPP------------SAHIPTILLSLIWFDVIKSDVMVV 407
Query: 1191 LNKAWGLEENSRLSFDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDAN--- 1247
+NK L + S + K I I P ++L++ +E +
Sbjct: 408 VNK---LHKYSLVEKQPKESTI--SI-------------PSIYLELKVKLENEYALHRSI 449
Query: 1248 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 1307
+ NI + ++ I Y + G+ + ++ R +F
Sbjct: 450 VDHYNIPKTFDSDDL-IPPYLDQYF-YSHIGHHLKNI---------EHPERMTLFRMVFL 498
Query: 1308 KNGGNLSKEGSVLFM---FKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKIT-II 1363
+ F+ +H + NTL L K + ++ D D K ++
Sbjct: 499 ----DFR------FLEQKIRHDSTAWNASGSILNTLQQL---KFYKPYICDNDPKYERLV 545
Query: 1364 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIV 1397
+ F+ K E + ++ YT+++
Sbjct: 546 NAILDFL----------PKIEEN-LICSKYTDLL 568
Score = 71.0 bits (173), Expect = 5e-12
Identities = 112/668 (16%), Positives = 211/668 (31%), Gaps = 223/668 (33%)
Query: 38 TAE-KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEH 96
E I +++ V+ + WT + + F ++ ++ +
Sbjct: 48 KEEIDHIIMSKDAVSGT-----LRLFWTLLSKQEE-----MVQKFVEE------VLRINY 91
Query: 97 KSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 156
K ++ I+ + P + + Q + ++ +D + + V+ QP L
Sbjct: 92 KFLMSPIKTEQRQ--------PSMMTRMYIEQRD-RLYNDNQVFAKYNVSRL----QPYL 138
Query: 157 EI----GELCRSKGVIFH--------CDAAQAVGKIDINIQNYKV-DLMSFSAHKIYGPK 203
++ EL +K V+ A +YKV M F KI+
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-------LSYKVQCKMDF---KIF--- 185
Query: 204 GIGALYI----RRNPRTRIE------AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 253
++ +P T +E QI S + +L
Sbjct: 186 -----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI------------KLRIH 228
Query: 254 EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDI 313
++ EL+R L K N L+ + ++ N N +FN +L+ +
Sbjct: 229 SIQAELRR-LLKSKPYENCLL-------VLLNVQN--AKAWN-AFNL--SCKILLTTRFK 275
Query: 314 AVS---SGSACTSASLEP-----------SYVLRALGCNDE-----------LAHSSI-- 346
V+ S + T SL+ S +L+ L C + S I
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 347 --RFTIGRFTTEKEIDFTIKLLKMKEFFMSYSEKVLDHYENPR---NVGVFEKNDNTVGT 401
R + + K ++ KL + E S VL+ E + + VF +
Sbjct: 336 SIRDGLATWDNWKHVNCD-KLTTIIE--SSL--NVLEPAEYRKMFDRLSVFPPS------ 384
Query: 402 GMVGAPACGDVMKL---QIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAM 458
P ++ L + + V+ + K Y SLV + K T+
Sbjct: 385 --AHIPT--ILLSLIWFDVIKSDVMVVVN-KLHKY---------SLVEKQPKESTI---- 426
Query: 459 SIKNTDIAEELVTKKAAKY------INKYIQKRGKGIGLRLGVYNRG--CSGLSYKLEYV 510
SI I EL K +Y ++ Y + + Y S + + L+ +
Sbjct: 427 SIP--SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 511 DEKRKEDQVFKLNGVQIFINEKDLLYFNDNFIQKSKIDQDAS------------VKLSTY 558
+ + +F+ +++ + F+++ KI D++ +L Y
Sbjct: 485 EHPERMT-LFR------------MVFLDFRFLEQ-KIRHDSTAWNASGSILNTLQQLKFY 530
Query: 559 LNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVK 618
K Y DP Y +N I DFL + E I K
Sbjct: 531 --KPYICDNDP----KYERLVNAIL-----------DFLPKI----EENLICS------K 563
Query: 619 FMALLQIS 626
+ LL+I+
Sbjct: 564 YTDLLRIA 571
Score = 71.0 bits (173), Expect = 5e-12
Identities = 112/668 (16%), Positives = 211/668 (31%), Gaps = 223/668 (33%)
Query: 1434 TAE-KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEH 1492
E I +++ V+ + WT + + F ++ ++ +
Sbjct: 48 KEEIDHIIMSKDAVSGT-----LRLFWTLLSKQEE-----MVQKFVEE------VLRINY 91
Query: 1493 KSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 1552
K ++ I+ + P + + Q + ++ +D + + V+ QP L
Sbjct: 92 KFLMSPIKTEQRQ--------PSMMTRMYIEQRD-RLYNDNQVFAKYNVSRL----QPYL 138
Query: 1553 EI----GELCRSKGVIFH--------CDAAQAVGKIDINIQNYKV-DLMSFSAHKIYGPK 1599
++ EL +K V+ A +YKV M F KI+
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-------LSYKVQCKMDF---KIF--- 185
Query: 1600 GIGALYI----RRNPRTRIE------AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 1649
++ +P T +E QI S + +L
Sbjct: 186 -----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI------------KLRIH 228
Query: 1650 EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDI 1709
++ EL+R L K N L+ + ++ N N +FN +L+ +
Sbjct: 229 SIQAELRR-LLKSKPYENCLL-------VLLNVQN--AKAWN-AFNL--SCKILLTTRFK 275
Query: 1710 AVS---SGSACTSASLEP-----------SYVLRALGCNDE-----------LAHSSI-- 1742
V+ S + T SL+ S +L+ L C + S I
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 1743 --RFTIGRFTTEKEIDFTIKLLKMKEFFMSYSEKVLDHYENPR---NVGVFEKNDNTVGT 1797
R + + K ++ KL + E S VL+ E + + VF +
Sbjct: 336 SIRDGLATWDNWKHVNCD-KLTTIIE--SSL--NVLEPAEYRKMFDRLSVFPPS------ 384
Query: 1798 GMVGAPACGDVMKL---QIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAM 1854
P ++ L + + V+ + K Y SLV + K T+
Sbjct: 385 --AHIPT--ILLSLIWFDVIKSDVMVVVN-KLHKY---------SLVEKQPKESTI---- 426
Query: 1855 SIKNTDIAEELVTKKAAKY------INKYIQKRGKGIGLRLGVYNRG--CSGLSYKLEYV 1906
SI I EL K +Y ++ Y + + Y S + + L+ +
Sbjct: 427 SIP--SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 1907 DEKRKEDQVFKLNGVQIFINEKDLLYFNDNFIQKSKIDQDAS------------VKLSTY 1954
+ + +F+ +++ + F+++ KI D++ +L Y
Sbjct: 485 EHPERMT-LFR------------MVFLDFRFLEQ-KIRHDSTAWNASGSILNTLQQLKFY 530
Query: 1955 LNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVK 2014
K Y DP Y +N I DFL + E I K
Sbjct: 531 --KPYICDNDP----KYERLVNAIL-----------DFLPKI----EENLICS------K 563
Query: 2015 FMALLQIS 2022
+ LL+I+
Sbjct: 564 YTDLLRIA 571
Score = 58.3 bits (140), Expect = 3e-08
Identities = 86/534 (16%), Positives = 155/534 (29%), Gaps = 163/534 (30%)
Query: 2106 RDLKNINTNSFPYDFQNK---------FGMLHIKTISGIKSPIEISAQIFITLKKIAENA 2156
+D+ ++ ++F +F K I I K + + ++F TL E
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 2157 VNNRIFGAVITVPAY----------------------------FNDIQRQFTKNAAKLAG 2188
V + V+ Y +ND Q F K
Sbjct: 79 V-QKFVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAK------- 128
Query: 2189 LNVLR--LLNEPTSAAIAYKLDKNIFEGIFAVYDLGG-GTFDISILKFKNGVFKVLSVGG 2245
NV R + A +L + + + + G G + + L V
Sbjct: 129 YNVSRLQPYLKLRQA--LLELRPA--KNVL-IDGVLGSGK---TWV--------ALDVCL 172
Query: 2246 DSNLGGDDFDYCLFSWI-VKN-----AFLKKLSYKDVNILMIKSREIKELLSYQSSVKLN 2299
+ D+ +F W+ +KN L+ L +L + S++KL
Sbjct: 173 SYKV-QCKMDFKIF-WLNLKNCNSPETVLEMLQ----KLLYQIDPNWTSRSDHSSNIKLR 226
Query: 2300 VKLSDKKIVNITIDMKQFFTITQH----LV-----NRTIL----LSSKALMDANLTIKDI 2346
I +I ++++ + LV N LS K L LT +
Sbjct: 227 -------IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL----LTTRFK 275
Query: 2347 NNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFL- 2405
V + HI + TL PD+ ++ +L L
Sbjct: 276 -QVTDFLSAATTTHI---SLDHHSMTL----TPDEVK----SLLLKYL----DCRPQDLP 319
Query: 2406 --LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKV---VQGED 2460
+L P L I I + + + ++ I+ V
Sbjct: 320 REVLTTNPRRLSI--IAESIRDGLATWDN--------WKHVNCDKLTTIIESSLNVLEPA 369
Query: 2461 ELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFY 2520
E K L+ F P + + LS+ ++ I + K +
Sbjct: 370 EYRKMFDRLSVF--------PPS---AHIPTIL-----LSLIWFDVIKSDVMVVVNK-LH 412
Query: 2521 NMNLDEIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFN 2574
+L E K + S IS+ L+ + +E+ H I + +N
Sbjct: 413 KYSLVE-KQ----PKESTISIPSIYLELKVKLENE-------YALHRSIVDHYN 454
Score = 54.9 bits (131), Expect = 4e-07
Identities = 95/678 (14%), Positives = 215/678 (31%), Gaps = 154/678 (22%)
Query: 921 FFTITQHLVNRTILLSSKALMDANLTIKDINNVIL-VGGSTRMKHIHEGVSNFFKTTLLT 979
F T + IL + N KD+ ++ + + HI T L
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 980 SIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIF---RNTT 1036
K + F+ I+ FL+ + E + ++ R+
Sbjct: 69 WTLLSK----QEEMVQKFVEEVLRINYKFLMS-----PIKTEQRQPSMMTRMYIEQRDRL 119
Query: 1037 IPCSYSGEFTTFKDN----QTAIAIK------------VVQGEDELVKNC--QVLANFEL 1078
+ + F K N Q + ++ ++ G V +A
Sbjct: 120 --YNDNQVFA--KYNVSRLQPYLKLRQALLELRPAKNVLIDG----VLGSGKTWVALDVC 171
Query: 1079 RDIPP---MPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNGA 1135
M + + + +L + +K I P + D N
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEML-------QKLLYQIDPNWTSRSDHSSN-I 223
Query: 1136 IFNENSGIS-----LCDALLKNSIFI-EHACEKSCACA---TCHVII----REGFNEINK 1182
+S + L +N + + + A +C +++ ++ + ++
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 1183 ANEVEEDMLNKAWGLEENSRLSFDAKRGKICTRI-MRELRVAINFGNNPDTNIKLRLAIE 1241
A + + + L + S K ++L + N P +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLK----YLDCRPQDLPREVLTTN-P-------RRL- 330
Query: 1242 KALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAII---VDCITNNRMRT 1298
+I ++ + N+ V + + II ++ + R
Sbjct: 331 ----------SIIAESIRDGLATWD---NWKHVNCDKLT----TIIESSLNVLEPAEYRK 373
Query: 1299 VSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDN 1358
+ + ++F + ++ +L L++ + K+ ++ + + K + L++K
Sbjct: 374 MFDRLSVFPPSA-HIPTI--LL-------SLIWF-DVIKSDVMVV-VNKLHKYSLVEKQP 421
Query: 1359 KITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLR 1418
K + I+ PS ++E+K LE A IV Y D+ I P +D+ Y
Sbjct: 422 KESTISIPSIYLELKVKLE--NEYALHRSIVDH-YNIPKTFDSDDLIPPY-LDQYF-Y-- 474
Query: 1419 VQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY 1478
+HI G + R + ++++ D R F
Sbjct: 475 ---------SHI-GHHLKNIEHPERMTLFRMVFLDFR---------------------FL 503
Query: 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT-----LSQLEEKI--CS 1531
+++ +H T S+L+++++L+ + PK L+ L ++EE +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 1532 DTILVSVMLVNNEIGVIQ 1549
T L+ + L+ + + +
Sbjct: 564 YTDLLRIALMAEDEAIFE 581
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 72.8 bits (179), Expect = 5e-13
Identities = 46/315 (14%), Positives = 97/315 (30%), Gaps = 53/315 (16%)
Query: 13 VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEV----AQLIYADPREIIWTSGAT 68
+ ++P R N K + + L+ SG T
Sbjct: 38 MCSNVLPITRKIVDIFLETNLGD-PGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGT 96
Query: 69 ESNNLAIKGAAHFYKKRGKH---------IITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
E+N +A++ + ++++ + II T H S + Y K
Sbjct: 97 EANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMM---DLEYIYAPIK 153
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNN----EIGVIQPILEIGELCRSKGVIFHCDAA- 174
+ I +++ + + ++ E+G I I E+ ++ + + H DAA
Sbjct: 154 EDYTIDEKFVKDAVEDYDVD---GIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAF 210
Query: 175 ---------QAVGKIDINIQ---NYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ 221
K +N + + VD ++ HK + P G + + ++ +
Sbjct: 211 GGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGI-LFKDIGYK-RYL 268
Query: 222 IH-----GGGHEYGL---RSGTLATHQIVGMGEAF-RLARIEMKEELKRILFLQKRLYNG 272
+ + R G L R ++ + + LY
Sbjct: 269 DVDAPYLTETRQATILGTRVG----FGGACTYAVLRYLGREGQRKIVNECMENTLYLYKK 324
Query: 273 LMESIEEIYINGDMN 287
L E+ + I +N
Sbjct: 325 LKENNFKPVIEPILN 339
Score = 72.8 bits (179), Expect = 5e-13
Identities = 46/315 (14%), Positives = 97/315 (30%), Gaps = 53/315 (16%)
Query: 1409 VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEV----AQLIYADPREIIWTSGAT 1464
+ ++P R N K + + L+ SG T
Sbjct: 38 MCSNVLPITRKIVDIFLETNLGD-PGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGT 96
Query: 1465 ESNNLAIKGAAHFYKKRGKH---------IITVQTEHKSVLDSIRKLENDGFRVTYLKPK 1515
E+N +A++ + ++++ + II T H S + Y K
Sbjct: 97 EANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMM---DLEYIYAPIK 153
Query: 1516 NNGLITLSQLEEKICSDTILVSVMLVNN----EIGVIQPILEIGELCRSKGVIFHCDAA- 1570
+ I +++ + + ++ E+G I I E+ ++ + + H DAA
Sbjct: 154 EDYTIDEKFVKDAVEDYDVD---GIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAF 210
Query: 1571 ---------QAVGKIDINIQ---NYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ 1617
K +N + + VD ++ HK + P G + + ++ +
Sbjct: 211 GGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGI-LFKDIGYK-RYL 268
Query: 1618 IH-----GGGHEYGL---RSGTLATHQIVGMGEAF-RLARIEMKEELKRILFLQKRLYNG 1668
+ + R G L R ++ + + LY
Sbjct: 269 DVDAPYLTETRQATILGTRVG----FGGACTYAVLRYLGREGQRKIVNECMENTLYLYKK 324
Query: 1669 LMESIEEIYINGDMN 1683
L E+ + I +N
Sbjct: 325 LKENNFKPVIEPILN 339
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 73.2 bits (179), Expect = 5e-13
Identities = 50/319 (15%), Positives = 102/319 (31%), Gaps = 36/319 (11%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG- 122
T +T + AA K +I HKS + ++ + G + ++ +G
Sbjct: 155 TPISTGMSISLCLSAAR-KKYGSNVVIYPYASHKSPIKAVSFV---GMNMRLVETVLDGD 210
Query: 123 --LITLSQLEEKICSDTILVSVMLV-----NNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175
+ + +E I + L + V I+EI ++C + + + A
Sbjct: 211 RVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY 270
Query: 176 AVG-----KIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGGHEY 229
A+ + Y+VD + S+ K P G G +Y + E + G
Sbjct: 271 AIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYS-TDAEFIKEISLSYPGRAS 329
Query: 230 GLRS-GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 288
TL + +G + + E +K +K L L + + ++
Sbjct: 330 ATPVVNTLVSLLSMGS-KNYL-------ELVKNQKNSKKLLDELL-NDLSKKTGGKFLDV 380
Query: 289 RIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF 348
P IS N + + + ++ V +G + H I
Sbjct: 381 ESPIASCISVNS-DPVEIAAKLYNLRV-TGPRGIKKTDHFGNCY-----LGTYTHDYIVM 433
Query: 349 TIGRFTTEKEIDFTIKLLK 367
++I ++ L+
Sbjct: 434 NAAIGVRTEDIVNSVSKLE 452
Score = 73.2 bits (179), Expect = 5e-13
Identities = 50/319 (15%), Positives = 102/319 (31%), Gaps = 36/319 (11%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG- 1518
T +T + AA K +I HKS + ++ + G + ++ +G
Sbjct: 155 TPISTGMSISLCLSAAR-KKYGSNVVIYPYASHKSPIKAVSFV---GMNMRLVETVLDGD 210
Query: 1519 --LITLSQLEEKICSDTILVSVMLV-----NNEIGVIQPILEIGELCRSKGVIFHCDAAQ 1571
+ + +E I + L + V I+EI ++C + + + A
Sbjct: 211 RVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY 270
Query: 1572 AVG-----KIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGGHEY 1625
A+ + Y+VD + S+ K P G G +Y + E + G
Sbjct: 271 AIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYS-TDAEFIKEISLSYPGRAS 329
Query: 1626 GLRS-GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 1684
TL + +G + + E +K +K L L + + ++
Sbjct: 330 ATPVVNTLVSLLSMGS-KNYL-------ELVKNQKNSKKLLDELL-NDLSKKTGGKFLDV 380
Query: 1685 RIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF 1744
P IS N + + + ++ V +G + H I
Sbjct: 381 ESPIASCISVNS-DPVEIAAKLYNLRV-TGPRGIKKTDHFGNCY-----LGTYTHDYIVM 433
Query: 1745 TIGRFTTEKEIDFTIKLLK 1763
++I ++ L+
Sbjct: 434 NAAIGVRTEDIVNSVSKLE 452
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 69.8 bits (170), Expect = 3e-12
Identities = 48/370 (12%), Positives = 99/370 (26%), Gaps = 75/370 (20%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+G+D G ++ V V + PS +G K + +
Sbjct: 24 VGLDVGYGDTKVIGVDGKR----------IIFPSRWAVTETESWGIGGKIPVLSTDGGQT 73
Query: 700 TISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAEN 759
K +++ + E I L + +
Sbjct: 74 KFIYGKYASGNNIRVPQGDGRLASK-------------------EAFPLIAAALWESGIH 114
Query: 760 AVNNRIFGAVIT-VPAYFNDIQRQFTKNAAK------------LAGLNVLRLLNEPTSAA 806
+ + + + P D++ + K A + + N+ RL+ P
Sbjct: 115 NDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVG 174
Query: 807 IAYKL----DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL 862
A L G V D+G T D+ + + V+ + +G D
Sbjct: 175 AALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAIS-- 231
Query: 863 FSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFF 922
+ K+ + L Q ++ V K++ +
Sbjct: 232 ---ALSRKIAKETGFVVPFDLA------------QEALSHPVMFRQKQVGGPEVSGPILE 276
Query: 923 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI- 981
+ ++ L + + ++I VGG + + I + TL+
Sbjct: 277 DLANRIIENI----RLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKP 327
Query: 982 -DPDKAVVFG 990
D A G
Sbjct: 328 EDLQFANALG 337
Score = 69.8 bits (170), Expect = 3e-12
Identities = 48/370 (12%), Positives = 99/370 (26%), Gaps = 75/370 (20%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+G+D G ++ V V + PS +G K + +
Sbjct: 24 VGLDVGYGDTKVIGVDGKR----------IIFPSRWAVTETESWGIGGKIPVLSTDGGQT 73
Query: 2096 TISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAEN 2155
K +++ + E I L + +
Sbjct: 74 KFIYGKYASGNNIRVPQGDGRLASK-------------------EAFPLIAAALWESGIH 114
Query: 2156 AVNNRIFGAVIT-VPAYFNDIQRQFTKNAAK------------LAGLNVLRLLNEPTSAA 2202
+ + + + P D++ + K A + + N+ RL+ P
Sbjct: 115 NDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVG 174
Query: 2203 IAYKL----DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL 2258
A L G V D+G T D+ + + V+ + +G D
Sbjct: 175 AALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAIS-- 231
Query: 2259 FSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFF 2318
+ K+ + L Q ++ V K++ +
Sbjct: 232 ---ALSRKIAKETGFVVPFDLA------------QEALSHPVMFRQKQVGGPEVSGPILE 276
Query: 2319 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI- 2377
+ ++ L + + ++I VGG + + I + TL+
Sbjct: 277 DLANRIIENI----RLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKP 327
Query: 2378 -DPDKAVVFG 2386
D A G
Sbjct: 328 EDLQFANALG 337
>2apn_A Protein HI1723; HI1723 solution structure, structural genomics,
structure 2 function project, S2F, unknown function; NMR
{Haemophilus influenzae}
Length = 114
Score = 64.2 bits (157), Expect = 3e-12
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 470 VTKKAAKYINKYIQKRGK-GIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 528
T AA + I + + LR+ + GCSG Y + ++ D + +GVQ+
Sbjct: 11 FTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLV 70
Query: 529 INEKDLLY 536
I+ L Y
Sbjct: 71 IDPMSLQY 78
Score = 64.2 bits (157), Expect = 3e-12
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 1866 VTKKAAKYINKYIQKRGK-GIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 1924
T AA + I + + LR+ + GCSG Y + ++ D + +GVQ+
Sbjct: 11 FTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLV 70
Query: 1925 INEKDLLY 1932
I+ L Y
Sbjct: 71 IDPMSLQY 78
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 63.4 bits (154), Expect = 6e-10
Identities = 51/256 (19%), Positives = 92/256 (35%), Gaps = 48/256 (18%)
Query: 64 TSGATESNNLAIKGA-AHFYKKRGKH---IITVQTEHKSVLDSIRKLENDGFRVTYLK-P 118
TSG TES LA A + RG II T H + G ++ +++
Sbjct: 132 TSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYF---GMKLRHVELD 188
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA---- 174
+ L ++++ I +T+L+ N G+ I +G++ + + H D+
Sbjct: 189 PTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSF 248
Query: 175 ----------QAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIH 223
+ + +D + V +S HK + PKG + RN R+
Sbjct: 249 IVSFMEKAGYKNLPLLDFRVPG--VTSISCDTHKYGFAPKGSSVIMY-RNSDLRMHQYYV 305
Query: 224 G----GGHEY-----GLRSGTL-----ATHQIVGMGEAFRLARIEMKEELKRILFLQKRL 269
GG G R G + AT +G + E + I+ +
Sbjct: 306 NPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGE-NGYI-------ESCQEIVGAAMKF 357
Query: 270 YNGLMESIEEIYINGD 285
+ E+I ++ I G+
Sbjct: 358 KKYIQENIPDLDIMGN 373
Score = 63.4 bits (154), Expect = 6e-10
Identities = 51/256 (19%), Positives = 92/256 (35%), Gaps = 48/256 (18%)
Query: 1460 TSGATESNNLAIKGA-AHFYKKRGKH---IITVQTEHKSVLDSIRKLENDGFRVTYLK-P 1514
TSG TES LA A + RG II T H + G ++ +++
Sbjct: 132 TSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYF---GMKLRHVELD 188
Query: 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA---- 1570
+ L ++++ I +T+L+ N G+ I +G++ + + H D+
Sbjct: 189 PTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSF 248
Query: 1571 ----------QAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIH 1619
+ + +D + V +S HK + PKG + RN R+
Sbjct: 249 IVSFMEKAGYKNLPLLDFRVPG--VTSISCDTHKYGFAPKGSSVIMY-RNSDLRMHQYYV 305
Query: 1620 G----GGHEY-----GLRSGTL-----ATHQIVGMGEAFRLARIEMKEELKRILFLQKRL 1665
GG G R G + AT +G + E + I+ +
Sbjct: 306 NPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGE-NGYI-------ESCQEIVGAAMKF 357
Query: 1666 YNGLMESIEEIYINGD 1681
+ E+I ++ I G+
Sbjct: 358 KKYIQENIPDLDIMGN 373
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 63.4 bits (154), Expect = 7e-10
Identities = 65/308 (21%), Positives = 103/308 (33%), Gaps = 62/308 (20%)
Query: 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREII 62
+ +T + VV M ++ G A+ + G
Sbjct: 134 WPSTAKFEAEVVA-MTAHM---LGGDAAGGTVCG-------------------------T 164
Query: 63 WTSGATESNNLAIKGA-AHFYKKRGKH---IITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
TSG TES LA+K +G + + H + + + G ++
Sbjct: 165 VTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYF---GIKLVRTPL 221
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ ++ + E I +T++V+ GV+ PI EI L G+ H DA G
Sbjct: 222 DADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDAC-LGG 280
Query: 179 KIDINIQNYK------------VDLMSFSAHKI-YGPKGIGALYIR----RNPRTRIEAQ 221
I + V +S HK YG KG + R + + I A
Sbjct: 281 FILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAAD 340
Query: 222 IHGGGHE----YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI 277
GG + G R G L+ M L + +RIL RL G+ +I
Sbjct: 341 WPGGLYFSPTFAGSRPGALSATAWAAM---LSLGEEGYLDATRRILQAADRLKAGV-RAI 396
Query: 278 EEIYINGD 285
+ I GD
Sbjct: 397 PSLKILGD 404
Score = 63.4 bits (154), Expect = 7e-10
Identities = 58/247 (23%), Positives = 89/247 (36%), Gaps = 33/247 (13%)
Query: 1460 TSGATESNNLAIKGA-AHFYKKRGKH---IITVQTEHKSVLDSIRKLENDGFRVTYLKPK 1515
TSG TES LA+K +G + + H + + + G ++
Sbjct: 166 TSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYF---GIKLVRTPLD 222
Query: 1516 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 1575
+ ++ + E I +T++V+ GV+ PI EI L G+ H DA G
Sbjct: 223 ADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDAC-LGGF 281
Query: 1576 IDINIQNYK------------VDLMSFSAHKI-YGPKGIGALYIR----RNPRTRIEAQI 1618
I + V +S HK YG KG + R + + I A
Sbjct: 282 ILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADW 341
Query: 1619 HGGGHE----YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIE 1674
GG + G R G L+ M L + +RIL RL G+ +I
Sbjct: 342 PGGLYFSPTFAGSRPGALSATAWAAM---LSLGEEGYLDATRRILQAADRLKAGV-RAIP 397
Query: 1675 EIYINGD 1681
+ I GD
Sbjct: 398 SLKILGD 404
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 62.4 bits (151), Expect = 7e-10
Identities = 60/389 (15%), Positives = 119/389 (30%), Gaps = 70/389 (17%)
Query: 635 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 694
+ + +DFG I +IPS + + + +
Sbjct: 2 SNVYVMALDFGNGFVKGKINDEKF-----------VIPSRIGRKTNENNQLKGFVDNKLD 50
Query: 695 IDPKNTISSIKR---FIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFI 751
+ + F K NT +++ + K + + I +
Sbjct: 51 VSEFIINGNNDEVLLFGNDLDKTTNTGKDTASTNDRYDIKSFKDL--------VECSIGL 102
Query: 752 TLKKIAENAVNNRIFGAVITVP--AYFNDIQRQFTKNAAKLAGLNV-----------LRL 798
+++ E VN I +P D Q +F K K + + +++
Sbjct: 103 LAREVPEEVVNVVI---ATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKI 159
Query: 799 LNEPTSAAIAYKLD-----KNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNL 853
+ +P + ++ K EG ++V D G GT I ++N V N
Sbjct: 160 VAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDT--YQNMKR-VEEESFVINK 216
Query: 854 GGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVN 913
G DF +S K I R I++ L Y+ KL+ K +++
Sbjct: 217 GTIDFY---------KRIASHVS-KKSEGASITPRMIEKGLEYK-----QCKLNQKTVID 261
Query: 914 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 973
+ + L+ + I I+ +I+ GG + + +S+++
Sbjct: 262 FKDEFYK---EQDSLIEEVM----SNFEITVGNINSIDRIIVTGGGANI--HFDSLSHYY 312
Query: 974 KTTLLTSIDPDKAVVFGAAIQANFLSGNR 1002
+ D + V G L
Sbjct: 313 SDVFEKADDSQFSNVRGYEKLGELLKNKV 341
Score = 62.4 bits (151), Expect = 7e-10
Identities = 60/389 (15%), Positives = 119/389 (30%), Gaps = 70/389 (17%)
Query: 2031 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 2090
+ + +DFG I +IPS + + + +
Sbjct: 2 SNVYVMALDFGNGFVKGKINDEKF-----------VIPSRIGRKTNENNQLKGFVDNKLD 50
Query: 2091 IDPKNTISSIKR---FIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFI 2147
+ + F K NT +++ + K + + I +
Sbjct: 51 VSEFIINGNNDEVLLFGNDLDKTTNTGKDTASTNDRYDIKSFKDL--------VECSIGL 102
Query: 2148 TLKKIAENAVNNRIFGAVITVP--AYFNDIQRQFTKNAAKLAGLNV-----------LRL 2194
+++ E VN I +P D Q +F K K + + +++
Sbjct: 103 LAREVPEEVVNVVI---ATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKI 159
Query: 2195 LNEPTSAAIAYKLD-----KNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNL 2249
+ +P + ++ K EG ++V D G GT I ++N V N
Sbjct: 160 VAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDT--YQNMKR-VEEESFVINK 216
Query: 2250 GGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVN 2309
G DF +S K I R I++ L Y+ KL+ K +++
Sbjct: 217 GTIDFY---------KRIASHVS-KKSEGASITPRMIEKGLEYK-----QCKLNQKTVID 261
Query: 2310 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 2369
+ + L+ + I I+ +I+ GG + + +S+++
Sbjct: 262 FKDEFYK---EQDSLIEEVM----SNFEITVGNINSIDRIIVTGGGANI--HFDSLSHYY 312
Query: 2370 KTTLLTSIDPDKAVVFGAAIQANFLSGNR 2398
+ D + V G L
Sbjct: 313 SDVFEKADDSQFSNVRGYEKLGELLKNKV 341
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 61.6 bits (149), Expect = 1e-09
Identities = 37/324 (11%), Positives = 98/324 (30%), Gaps = 44/324 (13%)
Query: 684 YVGKKAKITQNIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPI 743
+GK K T + + + +I NS + K ++ + +
Sbjct: 21 LIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVEDSSETS 80
Query: 744 EISAQIFI-TLKKIAE--NAVNNRIFGAVITVPA--YFNDIQRQFTKNAAKLAG------ 792
+ + + I + ++ N V+ P N ++ ++ K G
Sbjct: 81 KTNLIHKLAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKV 140
Query: 793 ------LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLS 846
+ + + + + + +N AV D GG S+ ++N V S
Sbjct: 141 DDKEYSFEITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSL--YRNCVV-NPS 197
Query: 847 VGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKL 906
G D + + ++ + L
Sbjct: 198 ERFIEEHGVKDLIIRVGDALTDLNNGNLITNEQAESA----------------------L 235
Query: 907 SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIH 966
++ + + T+ + + + + + K + + ++++I +GG+T+ +
Sbjct: 236 NNGYMKKGGEIDTESSTVIKKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LK 293
Query: 967 EGVSNFFKTTLLTSIDPDKAVVFG 990
E +S + + + + G
Sbjct: 294 EQISKTYPNNSIITNNSQWTTCEG 317
Score = 61.6 bits (149), Expect = 1e-09
Identities = 37/324 (11%), Positives = 98/324 (30%), Gaps = 44/324 (13%)
Query: 2080 YVGKKAKITQNIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPI 2139
+GK K T + + + +I NS + K ++ + +
Sbjct: 21 LIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVEDSSETS 80
Query: 2140 EISAQIFI-TLKKIAE--NAVNNRIFGAVITVPA--YFNDIQRQFTKNAAKLAG------ 2188
+ + + I + ++ N V+ P N ++ ++ K G
Sbjct: 81 KTNLIHKLAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKV 140
Query: 2189 ------LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLS 2242
+ + + + + + +N AV D GG S+ ++N V S
Sbjct: 141 DDKEYSFEITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSL--YRNCVV-NPS 197
Query: 2243 VGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKL 2302
G D + + ++ + L
Sbjct: 198 ERFIEEHGVKDLIIRVGDALTDLNNGNLITNEQAESA----------------------L 235
Query: 2303 SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIH 2362
++ + + T+ + + + + + K + + ++++I +GG+T+ +
Sbjct: 236 NNGYMKKGGEIDTESSTVIKKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LK 293
Query: 2363 EGVSNFFKTTLLTSIDPDKAVVFG 2386
E +S + + + + G
Sbjct: 294 EQISKTYPNNSIITNNSQWTTCEG 317
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 61.7 bits (149), Expect = 2e-09
Identities = 54/301 (17%), Positives = 91/301 (30%), Gaps = 47/301 (15%)
Query: 122 GLITLSQLEEKICSDTI----LVSVMLVNNEIGVIQP-----ILEIGELCRSKGVIFHCD 172
G + +L+E I + + N G QP + E+ E+ + G+ D
Sbjct: 165 GDFDIKKLKENIAQHGADNIVAIVSTVTCNSAG-GQPVSMSNLKEVYEIAKQHGIFVVMD 223
Query: 173 AAQAVGK---IDINIQNYK--------------VDLMSFSAHKIYGPKGIGALYIRRNPR 215
+A+ I YK D ++ SA K G + IR N
Sbjct: 224 SARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEE 283
Query: 216 TRIEAQIHGGGHEYGLRSGTLATHQIVGM--GEAFRLARIEMKEELKRILFLQKRLYNGL 273
A+ E + G LA + M G + + ++ +L RL
Sbjct: 284 IFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAG 343
Query: 274 MESIEEIYING---DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSY 330
+ + D +P I + ++++ A + + SG
Sbjct: 344 IPIQYPTGGHAVFVDCKKLVPQ---IPGDQFPAQAVINA---LYLESGVRAVEIGSFLLG 397
Query: 331 VLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLK--------MKEFFMSYSEKVLD 381
A G +R TI R T +D+ L +K Y VL
Sbjct: 398 RDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATLKGLEFEYEPPVLR 457
Query: 382 H 382
H
Sbjct: 458 H 458
Score = 61.7 bits (149), Expect = 2e-09
Identities = 54/301 (17%), Positives = 91/301 (30%), Gaps = 47/301 (15%)
Query: 1518 GLITLSQLEEKICSDTI----LVSVMLVNNEIGVIQP-----ILEIGELCRSKGVIFHCD 1568
G + +L+E I + + N G QP + E+ E+ + G+ D
Sbjct: 165 GDFDIKKLKENIAQHGADNIVAIVSTVTCNSAG-GQPVSMSNLKEVYEIAKQHGIFVVMD 223
Query: 1569 AAQAVGK---IDINIQNYK--------------VDLMSFSAHKIYGPKGIGALYIRRNPR 1611
+A+ I YK D ++ SA K G + IR N
Sbjct: 224 SARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEE 283
Query: 1612 TRIEAQIHGGGHEYGLRSGTLATHQIVGM--GEAFRLARIEMKEELKRILFLQKRLYNGL 1669
A+ E + G LA + M G + + ++ +L RL
Sbjct: 284 IFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAG 343
Query: 1670 MESIEEIYING---DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSY 1726
+ + D +P I + ++++ A + + SG
Sbjct: 344 IPIQYPTGGHAVFVDCKKLVPQ---IPGDQFPAQAVINA---LYLESGVRAVEIGSFLLG 397
Query: 1727 VLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLK--------MKEFFMSYSEKVLD 1777
A G +R TI R T +D+ L +K Y VL
Sbjct: 398 RDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATLKGLEFEYEPPVLR 457
Query: 1778 H 1778
H
Sbjct: 458 H 458
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 58.8 bits (142), Expect = 2e-08
Identities = 55/349 (15%), Positives = 99/349 (28%), Gaps = 55/349 (15%)
Query: 5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI--- 61
T D V M + + + Y +A + N VA L +A +
Sbjct: 50 CQTWDDENVHKLMDLSINKNWIDK----EEYPQSAAIDLR-CVNMVADLWHAPAPKNGQA 104
Query: 62 --IWTSGATESNNLAIKGAAHFYKKRGKH--------IITVQTEHKSVLDSIRKLENDGF 111
T G++E+ L ++KR + + + +
Sbjct: 105 VGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICW-HKFARYWDVEL 163
Query: 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC------RSK 165
R ++P + ++ E +TI V G + + +
Sbjct: 164 REIPMRP-GQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGI 222
Query: 166 GVIFHCDAA---------QAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR---- 211
+ H DAA D + V +S S HK P G G + R
Sbjct: 223 DIDMHIDAASGGFLAPFVAPDIVWDFRLPR--VKSISASGHKFGLAPLGCGWVIWRDEEA 280
Query: 212 RNPRTRIEAQIHGGGHE-YGL---RSGTLATHQIVGMGEAF-RLARIEMKEELKRILFLQ 266
GG + + R Q++ F RL R + +
Sbjct: 281 LPQELVFNVDYLGGQIGTFAINFSRPA----GQVIAQYYEFLRLGREGYTKVQNASYQVA 336
Query: 267 KRLYNGLMES-IEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIA 314
L + + + E G + IP + F +GE + D++
Sbjct: 337 AYLADEIAKLGPYEFICTGRPDEGIPA---VCFKLKDGEDPGYTLYDLS 382
Score = 58.8 bits (142), Expect = 2e-08
Identities = 55/349 (15%), Positives = 99/349 (28%), Gaps = 55/349 (15%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI--- 1457
T D V M + + + Y +A + N VA L +A +
Sbjct: 50 CQTWDDENVHKLMDLSINKNWIDK----EEYPQSAAIDLR-CVNMVADLWHAPAPKNGQA 104
Query: 1458 --IWTSGATESNNLAIKGAAHFYKKRGKH--------IITVQTEHKSVLDSIRKLENDGF 1507
T G++E+ L ++KR + + + +
Sbjct: 105 VGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICW-HKFARYWDVEL 163
Query: 1508 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC------RSK 1561
R ++P + ++ E +TI V G + + +
Sbjct: 164 REIPMRP-GQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGI 222
Query: 1562 GVIFHCDAA---------QAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR---- 1607
+ H DAA D + V +S S HK P G G + R
Sbjct: 223 DIDMHIDAASGGFLAPFVAPDIVWDFRLPR--VKSISASGHKFGLAPLGCGWVIWRDEEA 280
Query: 1608 RNPRTRIEAQIHGGGHE-YGL---RSGTLATHQIVGMGEAF-RLARIEMKEELKRILFLQ 1662
GG + + R Q++ F RL R + +
Sbjct: 281 LPQELVFNVDYLGGQIGTFAINFSRPA----GQVIAQYYEFLRLGREGYTKVQNASYQVA 336
Query: 1663 KRLYNGLMES-IEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIA 1710
L + + + E G + IP + F +GE + D++
Sbjct: 337 AYLADEIAKLGPYEFICTGRPDEGIPA---VCFKLKDGEDPGYTLYDLS 382
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 53.8 bits (129), Expect = 7e-08
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 556 STYLNKAYSILKDPFLRSIYLCKL-NGIDL----NTKLNLNFSHDFLEQQMKWRETLSII 610
S+ LN+AY LKDP RS Y+ KL IDL + L + + + LS +
Sbjct: 58 SSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQM 117
Query: 611 KNKKDKVKFMALLQ 624
++ +
Sbjct: 118 DDEAGVKLLEKQNK 131
Score = 53.8 bits (129), Expect = 7e-08
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 1952 STYLNKAYSILKDPFLRSIYLCKL-NGIDL----NTKLNLNFSHDFLEQQMKWRETLSII 2006
S+ LN+AY LKDP RS Y+ KL IDL + L + + + LS +
Sbjct: 58 SSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQM 117
Query: 2007 KNKKDKVKFMALLQ 2020
++ +
Sbjct: 118 DDEAGVKLLEKQNK 131
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 55.7 bits (135), Expect = 1e-07
Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 20/182 (10%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G + ++ + +D + + +V++E G++ PI E+G L G
Sbjct: 103 GIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGK 162
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRR--------NPRTRI 218
+ DA + G I ++I +D + SA+K I G G + R + R+
Sbjct: 163 TYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLS 222
Query: 219 ---EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEEL----KRILFLQKRLYN 271
AQ +G T TH ++ +A L + + + +R Q+ L
Sbjct: 223 LDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQA--LKELAKEGGVAARHQRYQQNQRSLVA 280
Query: 272 GL 273
G+
Sbjct: 281 GM 282
Score = 55.7 bits (135), Expect = 1e-07
Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 20/182 (10%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
G + ++ + +D + + +V++E G++ PI E+G L G
Sbjct: 103 GIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGK 162
Query: 1564 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRR--------NPRTRI 1614
+ DA + G I ++I +D + SA+K I G G + R + R+
Sbjct: 163 TYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLS 222
Query: 1615 ---EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEEL----KRILFLQKRLYN 1667
AQ +G T TH ++ +A L + + + +R Q+ L
Sbjct: 223 LDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQA--LKELAKEGGVAARHQRYQQNQRSLVA 280
Query: 1668 GL 1669
G+
Sbjct: 281 GM 282
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 55.9 bits (134), Expect = 1e-07
Identities = 57/372 (15%), Positives = 107/372 (28%), Gaps = 62/372 (16%)
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHII---TVQTEHKSVLDS---IRKLENDGFR 112
+ I+ T + NL K G+++ T + + D
Sbjct: 91 KHIVPTHQGRGAENLLS----QLAIKPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAH 146
Query: 113 VTYLKPKNNGLITLSQLEEKICSDTI----LVSVMLVNNEIGVIQP-----ILEIGELCR 163
L G I L +L++ I + + + N G QP + + EL
Sbjct: 147 DAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAG-GQPVSMANMRAVRELTE 205
Query: 164 SKGVIFHCDAAQAVGK---IDINIQNYK--------------VDLMSFSAHKIYGPKGIG 206
+ G+ DA + V I Q ++ D + S K IG
Sbjct: 206 AHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV-NIG 264
Query: 207 ALYIRRNP----RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRI 262
+ + ++ G YG +G +G+ EA + IE +K++
Sbjct: 265 GFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIE--HRVKQV 322
Query: 263 LFLQKRLYNGLMESIEEIYING---DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGS 319
+L +L + +E + + D H F + + +
Sbjct: 323 RYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERG 382
Query: 320 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLK--------MKE 370
++ + E +R TI R T +D + ++
Sbjct: 383 IISAGRNNVTGEHHR--PKLET----VRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRG 436
Query: 371 FFMSYSEKVLDH 382
Y K L
Sbjct: 437 LKFIYEPKQLRF 448
Score = 55.9 bits (134), Expect = 1e-07
Identities = 57/372 (15%), Positives = 107/372 (28%), Gaps = 62/372 (16%)
Query: 1455 REIIWTSGATESNNLAIKGAAHFYKKRGKHII---TVQTEHKSVLDS---IRKLENDGFR 1508
+ I+ T + NL K G+++ T + + D
Sbjct: 91 KHIVPTHQGRGAENLLS----QLAIKPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAH 146
Query: 1509 VTYLKPKNNGLITLSQLEEKICSDTI----LVSVMLVNNEIGVIQP-----ILEIGELCR 1559
L G I L +L++ I + + + N G QP + + EL
Sbjct: 147 DAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAG-GQPVSMANMRAVRELTE 205
Query: 1560 SKGVIFHCDAAQAVGK---IDINIQNYK--------------VDLMSFSAHKIYGPKGIG 1602
+ G+ DA + V I Q ++ D + S K IG
Sbjct: 206 AHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV-NIG 264
Query: 1603 ALYIRRNP----RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRI 1658
+ + ++ G YG +G +G+ EA + IE +K++
Sbjct: 265 GFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIE--HRVKQV 322
Query: 1659 LFLQKRLYNGLMESIEEIYING---DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGS 1715
+L +L + +E + + D H F + + +
Sbjct: 323 RYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERG 382
Query: 1716 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLK--------MKE 1766
++ + E +R TI R T +D + ++
Sbjct: 383 IISAGRNNVTGEHHR--PKLET----VRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRG 436
Query: 1767 FFMSYSEKVLDH 1778
Y K L
Sbjct: 437 LKFIYEPKQLRF 448
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 55.8 bits (134), Expect = 1e-07
Identities = 49/323 (15%), Positives = 100/323 (30%), Gaps = 48/323 (14%)
Query: 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEK-ARNEVAQLIYADPREI 61
TT ++P ++ + + + Y T E ++ N +A L A E
Sbjct: 62 SFVTTWMEPECDKLIMSSINKNYVDMD----EYPVTTE--LQNRCVNMIAHLFNAPLEEA 115
Query: 62 IW-----TSGATESNNLAIKGAAHFYKKRGKH---------IITVQTEHKSVLDSIRKLE 107
T G++E+ LA ++ + K I+T + +
Sbjct: 116 ETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCW-EKFARYF 174
Query: 108 NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG- 166
+ L ++ Q + + +TI V+ +L + G + + + +L K
Sbjct: 175 EVELKEVKLSE-GYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNK 233
Query: 167 -----VIFHCDAA-------QAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR-- 211
H DAA +++ + + V ++ S HK GIG + R
Sbjct: 234 ETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNK 293
Query: 212 --RNPRTRIEAQIHGGGHE-YGL---RSGTLATHQIVGMGEAFRLARIEMKEELKRILFL 265
G + L + + Q + RL + ++
Sbjct: 294 EDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQL---IRLGHEGYRNVMENCREN 350
Query: 266 QKRLYNGLMESIEEIYINGDMNN 288
L GL ++ ++ D
Sbjct: 351 MIVLREGLEKTERFNIVSKDEGV 373
Score = 55.8 bits (134), Expect = 1e-07
Identities = 38/256 (14%), Positives = 79/256 (30%), Gaps = 36/256 (14%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKH---------IITVQTEHKSVLDSIRKLENDGFRVT 1510
T G++E+ LA ++ + K I+T + + +
Sbjct: 123 TVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCW-EKFARYFEVELKEV 181
Query: 1511 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG------VI 1564
L ++ Q + + +TI V+ +L + G + + + +L K
Sbjct: 182 KLSE-GYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240
Query: 1565 FHCDAA-------QAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR----RNPRT 1612
H DAA +++ + + V ++ S HK GIG + R
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300
Query: 1613 RIEAQIHGGGHE-YGL---RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNG 1668
G + L + + Q + RL + ++ L G
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQL---IRLGHEGYRNVMENCRENMIVLREG 357
Query: 1669 LMESIEEIYINGDMNN 1684
L ++ ++ D
Sbjct: 358 LEKTERFNIVSKDEGV 373
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 2e-07
Identities = 70/384 (18%), Positives = 116/384 (30%), Gaps = 137/384 (35%)
Query: 240 QIVGMGEAFRLARIEMKEELKRI-LFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
Q GMG ++ R + G SI +I +NN P NL I F
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTY--GF--SILDI----VINN--PVNLTIHF 1676
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
+G K I + + ++ + E+ S +T F +EK
Sbjct: 1677 GGEKG-------KRIRENYSAMIFETIVDGKLKTEKI--FKEINEHSTSYT---FRSEKG 1724
Query: 359 IDFTIKLLKMKEF-----F-MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDV 412
LL +F M + FE
Sbjct: 1725 ------LLSATQFTQPALTLMEKA--------------AFE------------------D 1746
Query: 413 MKLQIKVNKNGVI-TDAKFKTYGCG------SAIASSSLVTEWVKGKTLDEAMSIKNTDI 465
+K G+I DA F G +A+AS + + MSI++
Sbjct: 1747 LK------SKGLIPADATF----AGHSLGEYAALASLA------------DVMSIES--- 1781
Query: 466 AEELVTK--KAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLN 523
E+V + + G+ + + N G S+ E + ++V K
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGM-IAI-NPGRVAASFSQEALQY--VVERVGKRT 1837
Query: 524 G--VQIFINEKDLLYFNDNFIQKSKI----DQDASVKLSTYLNKAYSILKDPFLRSIYLC 577
G V+I +N +N Q D A L+ ++L
Sbjct: 1838 GWLVEI-VN------YNVENQQ---YVAAGDLRA-------LDTVTNVLN--------FI 1872
Query: 578 KLNGIDLNTKLNLNFSHDFLEQQM 601
KL ID+ +L + S + +E +
Sbjct: 1873 KLQKIDI-IELQKSLSLEEVEGHL 1895
Score = 55.8 bits (134), Expect = 2e-07
Identities = 70/384 (18%), Positives = 116/384 (30%), Gaps = 137/384 (35%)
Query: 1636 QIVGMGEAFRLARIEMKEELKRI-LFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 1694
Q GMG ++ R + G SI +I +NN P NL I F
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTY--GF--SILDI----VINN--PVNLTIHF 1676
Query: 1695 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 1754
+G K I + + ++ + E+ S +T F +EK
Sbjct: 1677 GGEKG-------KRIRENYSAMIFETIVDGKLKTEKI--FKEINEHSTSYT---FRSEKG 1724
Query: 1755 IDFTIKLLKMKEF-----F-MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDV 1808
LL +F M + FE
Sbjct: 1725 ------LLSATQFTQPALTLMEKA--------------AFE------------------D 1746
Query: 1809 MKLQIKVNKNGVI-TDAKFKTYGCG------SAIASSSLVTEWVKGKTLDEAMSIKNTDI 1861
+K G+I DA F G +A+AS + + MSI++
Sbjct: 1747 LK------SKGLIPADATF----AGHSLGEYAALASLA------------DVMSIES--- 1781
Query: 1862 AEELVTK--KAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLN 1919
E+V + + G+ + + N G S+ E + ++V K
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGM-IAI-NPGRVAASFSQEALQY--VVERVGKRT 1837
Query: 1920 G--VQIFINEKDLLYFNDNFIQKSKI----DQDASVKLSTYLNKAYSILKDPFLRSIYLC 1973
G V+I +N +N Q D A L+ ++L
Sbjct: 1838 GWLVEI-VN------YNVENQQ---YVAAGDLRA-------LDTVTNVLN--------FI 1872
Query: 1974 KLNGIDLNTKLNLNFSHDFLEQQM 1997
KL ID+ +L + S + +E +
Sbjct: 1873 KLQKIDI-IELQKSLSLEEVEGHL 1895
Score = 55.4 bits (133), Expect = 3e-07
Identities = 101/645 (15%), Positives = 175/645 (27%), Gaps = 223/645 (34%)
Query: 1091 IKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNL---DEIKNGAIFNENSGISLCD 1147
++ V S F ++ +++F I P DE + L
Sbjct: 16 LEHVLLVPTA---SFFIASQL--QEQFNKILPEPTEGFAADDEPT--------TPAELVG 62
Query: 1148 ALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNK------AWGLEENS 1201
L ++ E S V + E E L A L + +
Sbjct: 63 KFLG---YVSSLVEPSKVGQFDQV-LNLCLTEF------ENCYLEGNDIHALAAKLLQEN 112
Query: 1202 RLSFDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKAL--DANIPKNNIFRAI-- 1257
+ + +++ A P AL + AI
Sbjct: 113 DTTLVKTK-----ELIKNYITARIMAKRPFDK-----KSNSALFRAVGEGNAQLV-AIFG 161
Query: 1258 -QKNNSNIKNENINYI-EVR--YEGYSVNGAAIIVDCIT--NNRMRTVSNIRNIFNKNGG 1311
Q N +Y E+R Y+ Y V +I + +RT + +F + G
Sbjct: 162 GQGNTD-------DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GL 213
Query: 1312 N----LSKEGSV-----------------LFMFKH----CGQLLFLPNTKKNTL------ 1340
N L + + H L F P ++ L
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 1341 -------LDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPY 1393
+ +A E F + IT++ FI G + + P
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLF----FI---------GVRCYEA----YPN 316
Query: 1394 TNIVFKDATTPIDPRVVDKMIPYLRVQFGNPA--------SRNHIYGWTAEKAIEKARNE 1445
T+ + P +++ L G P+ ++ + + + K +
Sbjct: 317 TS---------LPPSILED---SLENNEGVPSPMLSISNLTQEQV-----QDYVNKTNSH 359
Query: 1446 VAQ-------LIYADPREIIWTSGATES-----NNL-AIKGAAHFYKKRGKHIITVQTEH 1492
+ L+ + ++ SG +S L K + + R
Sbjct: 360 LPAGKQVEISLVNG-AKNLV-VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF-------- 409
Query: 1493 KSVLDSIRKLENDGFRVTYLKPKNNGLIT-------LSQLEEKICSDTILVSVMLVNNEI 1545
S RKL+ F +L P + L + I D + +V +I
Sbjct: 410 -----SERKLK---FSNRFL-P-----VASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 1546 GVIQPILEI--GE-LCRSKGVIFH--CDAAQAVGKIDINIQNYKVD---LMSFSAHKI-- 1595
+ P+ + G L G I D I V F A I
Sbjct: 456 QI--PVYDTFDGSDLRVLSGSISERIVDC----------IIRLPVKWETTTQFKATHILD 503
Query: 1596 YGP---KGIGALYIRRNPR---TRIEAQIHGG------GHEYGLR 1628
+GP G+G L RN R+ I G +YG +
Sbjct: 504 FGPGGASGLGVL-THRNKDGTGVRV---IVAGTLDINPDDDYGFK 544
Score = 53.1 bits (127), Expect = 2e-06
Identities = 76/492 (15%), Positives = 151/492 (30%), Gaps = 144/492 (29%)
Query: 1340 LLDLALEKGAEDFLIDKDNKI-----TIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYT 1394
+L+L L + +L D I ++ + L A + RP+
Sbjct: 83 VLNLCLTEFENCYLEGND--IHALAAKLLQENDTTLVKTKELIKNYITARI--MAKRPFD 138
Query: 1395 N----IVFKDATTPIDPRVVDKMIPYLRVQF---GNPASRNHIYGWTAEKAIEKARNEVA 1447
+F+ + ++V F GN Y + E+
Sbjct: 139 KKSNSALFRAVGEG-NAQLV--------AIFGGQGN----TDDY-F----------EEL- 173
Query: 1448 QLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGF 1507
+ +Y ++ +L IK +A + + + + L+ + LEN
Sbjct: 174 RDLYQTYHVLV--------GDL-IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 1508 R--VTYLK------PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR 1559
YL P LI + QL + ++ G ++ L+ G
Sbjct: 225 TPDKDYLLSIPISCP----LIGVIQL----AHYVVTAKLLGFTP--GELRSYLK-GATGH 273
Query: 1560 SKGVI-------------FHCDAAQAVGKIDINI-----QNYKVDLMSFSAHKIYGPKGI 1601
S+G++ F +A+ + I + Y + S +
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 1602 GA----LYIRRNPRTRIEAQI-----HGGGHEY---GLRSGTLATHQIV--------GMG 1641
G L I + +++ + H + L +G A + +V G+
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG--AKNLVVSGPPQSLYGLN 390
Query: 1642 EAFRLARIEMKEELKRILFLQKRLYNG-------------LMESIEEIYINGDMNNRIPH 1688
R A+ + RI F +++L L+ ++ IN D+
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL-INKDLVKN--- 446
Query: 1689 NLNISFNFIEGESLLMAIKDIAVSSGS--ACTSASLEPSYVLRALGCNDELAHSSIRFT- 1745
N+SFN + + + + D GS S S+ V D + +++
Sbjct: 447 --NVSFN---AKDIQIPVYDTF--DGSDLRVLSGSISERIV-------DCIIRLPVKWET 492
Query: 1746 IGRFTTEKEIDF 1757
+F +DF
Sbjct: 493 TTQFKATHILDF 504
Score = 49.7 bits (118), Expect = 2e-05
Identities = 63/412 (15%), Positives = 111/412 (26%), Gaps = 180/412 (43%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MD T+ V ++ + + YG++ + ++ +P
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFK----------DTYGFS-----------ILDIVINNPVN 1671
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
+ HF ++GK I R Y
Sbjct: 1672 LTI----------------HFGGEKGKRI----------------------RENYSA--- 1690
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL-EIGELCRSKGVIFHCDA------ 173
+ + D L + + I EI E S F +
Sbjct: 1691 --------MIFETIVDGKLKT-----------EKIFKEINE--HSTSYTFRSEKGLLSAT 1729
Query: 174 --AQ-AVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH--- 227
Q A+ LM +A + KG+ P A GH
Sbjct: 1730 QFTQPALT------------LMEKAAFEDLKSKGL-------IPADATFA-----GHSLG 1765
Query: 228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN 287
EY A + + + + E L ++F + + E N M
Sbjct: 1766 EYA------A---LASLADVMSI------ESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 288 NRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPS--------YV----LRAL 335
P + SF+ E+L ++ + +G E YV LRAL
Sbjct: 1811 AINPGRVAASFS---QEALQYVVERVGKRTGWLV-----EIVNYNVENQQYVAAGDLRAL 1862
Query: 336 GCNDELAHSSIRFTIGRFTTEKEIDF----TIKLLKMKEFFMSYS-EKVLDH 382
D + ++F I ++++++ S S E+V H
Sbjct: 1863 ---DTVT--------------NVLNFIKLQKIDIIELQK---SLSLEEVEGH 1894
Score = 48.9 bits (116), Expect = 3e-05
Identities = 67/420 (15%), Positives = 131/420 (31%), Gaps = 119/420 (28%)
Query: 20 YL--RVQFGNPASRNHIYGWTAEKA-IEKARNEVAQLI-----------YADPREI--IW 63
Y+ R+ P + A AQL+ Y + E+ ++
Sbjct: 126 YITARIMAKRPFDKKS------NSALFRAVGEGNAQLVAIFGGQGNTDDYFE--ELRDLY 177
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFR--VTYLK---- 117
+ +L IK +A + + + + L+ + LEN YL
Sbjct: 178 QTYHVLVGDL-IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 118 --PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVI------- 168
P LI + QL + ++ G ++ L+ G S+G++
Sbjct: 237 SCP----LIGVIQL----AHYVVTAKLLGFTP--GELRSYLK-GATGHSQGLVTAVAIAE 285
Query: 169 ------FHCDAAQAVGKIDINI-----QNYKVDLMSFSAHKIYGPKGIGA----LYIRRN 213
F +A+ + I + Y + S + G L I
Sbjct: 286 TDSWESFFVSVRKAI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 214 PRTRIEAQI-----HGGGHEY---GLRSGTLATHQIV--------GMGEAFRLARIEMKE 257
+ +++ + H + L +G A + +V G+ R A+
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNG--AKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 258 ELKRILFLQKRLYNG-------------LMESIEEIYINGDMNNRIPHNLNISFNFIEGE 304
+ RI F +++L L+ ++ IN D+ N+SFN +
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL-INKDLVKN-----NVSFN---AK 453
Query: 305 SLLMAIKDIAVSSGS--ACTSASLEPSYVLRALGCNDELAHSSIRFT-IGRFTTEKEIDF 361
+ + + D GS S S+ V D + +++ +F +DF
Sbjct: 454 DIQIPVYDTF--DGSDLRVLSGSISERIV-------DCIIRLPVKWETTTQFKATHILDF 504
Score = 47.4 bits (112), Expect = 7e-05
Identities = 64/423 (15%), Positives = 113/423 (26%), Gaps = 189/423 (44%)
Query: 1387 GIVMRPYTNI-VFKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNE 1445
G+ M Y +D V ++ + + YG++
Sbjct: 1630 GMGMDLYKTSKAAQD--------VWNRADNHFK----------DTYGFS----------- 1660
Query: 1446 VAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND 1505
+ ++ +P + HF ++GK I
Sbjct: 1661 ILDIVINNPVNLTI----------------HFGGEKGKRI-------------------- 1684
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL-EIGELCRSKGVI 1564
R Y + + D L + + I EI E S
Sbjct: 1685 --RENYSA-----------MIFETIVDGKLKT-----------EKIFKEINE--HSTSYT 1718
Query: 1565 FHCDA--------AQ-AVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIE 1615
F + Q A+ LM +A + KG+ P
Sbjct: 1719 FRSEKGLLSATQFTQPALT------------LMEKAAFEDLKSKGL-------IPADATF 1759
Query: 1616 AQIHGGGH---EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES 1672
A GH EY A + + + + E L ++F + +
Sbjct: 1760 A-----GHSLGEYA------A---LASLADVMSI------ESLVEVVFYRGMTMQVAVPR 1799
Query: 1673 IEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPS------- 1725
E N M P + SF+ E+L ++ + +G E
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFS---QEALQYVVERVGKRTGWLV-----EIVNYNVENQ 1851
Query: 1726 -YV----LRALGCNDELAHSSIRFTIGRFTTEKEIDF----TIKLLKMKEFFMSYS-EKV 1775
YV LRAL D + ++F I ++++++ S S E+V
Sbjct: 1852 QYVAAGDLRAL---DTVT--------------NVLNFIKLQKIDIIELQK---SLSLEEV 1891
Query: 1776 LDH 1778
H
Sbjct: 1892 EGH 1894
Score = 43.5 bits (102), Expect = 0.001
Identities = 86/536 (16%), Positives = 151/536 (28%), Gaps = 212/536 (39%)
Query: 660 EVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRF---IARDLKNIN 716
L+++ F + LP+ + +P + +F ++ ++
Sbjct: 31 SQLQEQ---FN-----KILPE------PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 717 TNSFPY-------DFQNKFGML-----H--------------IKTISGIKSPIEISAQIF 750
F +F+N + L H +KT IK+ I
Sbjct: 77 VGQFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 751 ITLKKIAENAV-------NNRIF------GAVITVPAYFNDIQ----------RQFTKNA 787
K + +A+ N ++ G YF +++ K +
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD---YFEELRDLYQTYHVLVGDLIKFS 191
Query: 788 AKL----------------AGLNVLRLLNEP---------TSAAIAYKLDKNIFEGIFAV 822
A+ GLN+L L P S I+ L I A
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL---IGVIQLAH 248
Query: 823 Y-----DLG---GGTFDI--SILKFKNGVFKVLSV---GGDSNLGGDDFDYCLFSWIVKN 869
Y LG G G+ V +V DS + F + +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGL--VTAVAIAETDS---WESF-FVSVRKAITV 302
Query: 870 AFL----KKLSYKDVNI---LMIKSREIKE-LLSYQSSV-------------KLNVKLSD 908
F +Y + ++ ++ S E E + S S+ K N L
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 909 KKIVNITIDMKQFFTITQHLVN--RTILLSS--KALMDANLTI--------KDINNVILV 956
K V I+ LVN + +++S ++L NLT+ D + +
Sbjct: 363 GKQVEIS------------LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF- 409
Query: 957 GGSTRMKHIHEGVSNF------FKTTLLTS----IDPDKAVVFGAAIQANFL-------- 998
S R + F F + LL I+ D V + A +
Sbjct: 410 --SERKLKFS---NRFLPVASPFHSHLLVPASDLINKD-LVKNNVSFNAKDIQIPVYDTF 463
Query: 999 SGN--RGIDDNFL--LLDVI---P--------------LSLG---IETIGGLVEKI 1030
G+ R + + ++D I P L G +G L +
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Score = 43.5 bits (102), Expect = 0.001
Identities = 86/536 (16%), Positives = 151/536 (28%), Gaps = 212/536 (39%)
Query: 2056 EVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRF---IARDLKNIN 2112
L+++ F + LP+ + +P + +F ++ ++
Sbjct: 31 SQLQEQ---FN-----KILPE------PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 2113 TNSFPY-------DFQNKFGML-----H--------------IKTISGIKSPIEISAQIF 2146
F +F+N + L H +KT IK+ I
Sbjct: 77 VGQFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 2147 ITLKKIAENAV-------NNRIF------GAVITVPAYFNDIQ----------RQFTKNA 2183
K + +A+ N ++ G YF +++ K +
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD---YFEELRDLYQTYHVLVGDLIKFS 191
Query: 2184 AKL----------------AGLNVLRLLNEP---------TSAAIAYKLDKNIFEGIFAV 2218
A+ GLN+L L P S I+ L I A
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL---IGVIQLAH 248
Query: 2219 Y-----DLG---GGTFDI--SILKFKNGVFKVLSV---GGDSNLGGDDFDYCLFSWIVKN 2265
Y LG G G+ V +V DS + F + +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGL--VTAVAIAETDS---WESF-FVSVRKAITV 302
Query: 2266 AFL----KKLSYKDVNI---LMIKSREIKE-LLSYQSSV-------------KLNVKLSD 2304
F +Y + ++ ++ S E E + S S+ K N L
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 2305 KKIVNITIDMKQFFTITQHLVN--RTILLSS--KALMDANLTI--------KDINNVILV 2352
K V I+ LVN + +++S ++L NLT+ D + +
Sbjct: 363 GKQVEIS------------LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF- 409
Query: 2353 GGSTRMKHIHEGVSNF------FKTTLLTS----IDPDKAVVFGAAIQANFL-------- 2394
S R + F F + LL I+ D V + A +
Sbjct: 410 --SERKLKFS---NRFLPVASPFHSHLLVPASDLINKD-LVKNNVSFNAKDIQIPVYDTF 463
Query: 2395 SGN--RGIDDNFL--LLDVI---P--------------LSLG---IETIGGLVEKI 2426
G+ R + + ++D I P L G +G L +
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Score = 43.1 bits (101), Expect = 0.001
Identities = 48/296 (16%), Positives = 90/296 (30%), Gaps = 104/296 (35%)
Query: 482 IQKRGKGIGLRL------GVYNRGCS------GLSYKLEYVDEKRKEDQV-FK-LNGVQI 527
Q++G G+ L V+NR + G S L+ V + F G +I
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSI-LDIVINNPVNLTIHFGGEKGKRI 1684
Query: 528 FINEKDLLY--FNDNFIQKSKIDQDASVKLSTY--------LNK--------------AY 563
N +++ D ++ KI ++ + ++Y L+ A+
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 564 SILKDPFLR---------SI--Y--LCKLNG-IDLNTKLNL-----NFSHDFLEQQMKWR 604
LK L S+ Y L L + + + + + + + R
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR 1804
Query: 605 ETLSIIKNKKDKVKFMALLQISEPDDISVKNKCVSIGIDFGTTNSLVAIVRN-NIPEVLK 663
+I +V + +++ +G T LV IV N N+
Sbjct: 1805 SNYGMIAINPGRV-------AASFSQEALQYVVERVG---KRTGWLVEIV-NYNVE---- 1849
Query: 664 DKYGYFLIPSIVRYLPDGKIYV--GKKAKITQNIDP-KNTISSIKRFIARDLKNIN 716
+ YV G +D N ++ IK L+ I+
Sbjct: 1850 -----------------NQQYVAAGDLR----ALDTVTNVLNFIK------LQKID 1878
Score = 43.1 bits (101), Expect = 0.001
Identities = 48/296 (16%), Positives = 90/296 (30%), Gaps = 104/296 (35%)
Query: 1878 IQKRGKGIGLRL------GVYNRGCS------GLSYKLEYVDEKRKEDQV-FK-LNGVQI 1923
Q++G G+ L V+NR + G S L+ V + F G +I
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSI-LDIVINNPVNLTIHFGGEKGKRI 1684
Query: 1924 FINEKDLLY--FNDNFIQKSKIDQDASVKLSTY--------LNK--------------AY 1959
N +++ D ++ KI ++ + ++Y L+ A+
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 1960 SILKDPFLR---------SI--Y--LCKLNG-IDLNTKLNL-----NFSHDFLEQQMKWR 2000
LK L S+ Y L L + + + + + + + R
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR 1804
Query: 2001 ETLSIIKNKKDKVKFMALLQISEPDDISVKNKCVSIGIDFGTTNSLVAIVRN-NIPEVLK 2059
+I +V + +++ +G T LV IV N N+
Sbjct: 1805 SNYGMIAINPGRV-------AASFSQEALQYVVERVG---KRTGWLVEIV-NYNVE---- 1849
Query: 2060 DKYGYFLIPSIVRYLPDGKIYV--GKKAKITQNIDP-KNTISSIKRFIARDLKNIN 2112
+ YV G +D N ++ IK L+ I+
Sbjct: 1850 -----------------NQQYVAAGDLR----ALDTVTNVLNFIK------LQKID 1878
Score = 38.1 bits (88), Expect = 0.056
Identities = 56/322 (17%), Positives = 98/322 (30%), Gaps = 149/322 (46%)
Query: 649 SLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAK-ITQN-------IDPKNT 700
S++ IV NN P + +F G G+K K I +N
Sbjct: 1660 SILDIVINN-P---VNLTIHF-----------G----GEKGKRIRENYSAMIFETIVDGK 1700
Query: 701 ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENA 760
+ + K F K IN +S Y F+++ G+L T Q
Sbjct: 1701 LKTEKIF-----KEINEHSTSYTFRSEKGLLS-AT---------QFTQP----------- 1734
Query: 761 VNNRIFGAVITVP-AYFNDIQRQFTKNA-AKLAGLNVLRLLNEPTS-------AAIAYKL 811
A+ + A F D++ + A A AG S A++A
Sbjct: 1735 -------ALTLMEKAAFEDLKSKGLIPADATFAGH----------SLGEYAALASLA--- 1774
Query: 812 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSV----GGDSN--------------L 853
+ ++ L + ++ F G+ ++V G SN
Sbjct: 1775 ------DVMSIESL------VEVV-FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 854 GGDDFDYCL------FSWIV-----------------KNAFLKKLSYKDVNIL-MIKSRE 889
+ Y + W+V A L ++ N+L IK ++
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA-LDTVT----NVLNFIKLQK 1876
Query: 890 IKELLSYQSSVKLNVKLSDKKI 911
I ++L LS +++
Sbjct: 1877 ID-------IIELQKSLSLEEV 1891
Score = 38.1 bits (88), Expect = 0.056
Identities = 56/322 (17%), Positives = 98/322 (30%), Gaps = 149/322 (46%)
Query: 2045 SLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAK-ITQN-------IDPKNT 2096
S++ IV NN P + +F G G+K K I +N
Sbjct: 1660 SILDIVINN-P---VNLTIHF-----------G----GEKGKRIRENYSAMIFETIVDGK 1700
Query: 2097 ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENA 2156
+ + K F K IN +S Y F+++ G+L T Q
Sbjct: 1701 LKTEKIF-----KEINEHSTSYTFRSEKGLLS-AT---------QFTQP----------- 1734
Query: 2157 VNNRIFGAVITVP-AYFNDIQRQFTKNA-AKLAGLNVLRLLNEPTS-------AAIAYKL 2207
A+ + A F D++ + A A AG S A++A
Sbjct: 1735 -------ALTLMEKAAFEDLKSKGLIPADATFAGH----------SLGEYAALASLA--- 1774
Query: 2208 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSV----GGDSN--------------L 2249
+ ++ L + ++ F G+ ++V G SN
Sbjct: 1775 ------DVMSIESL------VEVV-FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 2250 GGDDFDYCL------FSWIV-----------------KNAFLKKLSYKDVNIL-MIKSRE 2285
+ Y + W+V A L ++ N+L IK ++
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA-LDTVT----NVLNFIKLQK 1876
Query: 2286 IKELLSYQSSVKLNVKLSDKKI 2307
I ++L LS +++
Sbjct: 1877 ID-------IIELQKSLSLEEV 1891
Score = 32.7 bits (74), Expect = 2.2
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 21/92 (22%)
Query: 1167 ATCHVIIREGFN--EINKANEVEEDMLNKAWGLEENSRLSFDAKRGKICTRIMRELRVAI 1224
A H GF+ +I N V + F ++GK RI RE A+
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIH-------------FGGEKGK---RI-RENYSAM 1691
Query: 1225 NFGNNPDTNIKLRLAIEKALDANIPKNNIFRA 1256
F D +K I K ++ + FR+
Sbjct: 1692 IFETIVDGKLKTE-KIFKEINEHSTS-YTFRS 1721
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 51.9 bits (125), Expect = 2e-06
Identities = 41/231 (17%), Positives = 74/231 (32%), Gaps = 55/231 (23%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV-----TYLKP 118
SG T + +A++ +K + + H + E DG + L
Sbjct: 70 PSG-TMAQQIALR--IWADRKENRRVAYHPLSH------LEIHEQDGLKELQQITPLLLG 120
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAA 174
N L+T+ ++ V + L EI G + + +I E C +G+ H D A
Sbjct: 121 TANQLLTIDDIKSLRE-PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGA 179
Query: 175 ---QAVGKIDINIQNY--KVDLMSFSAHKIYGPKGIGAL----------YIRRNPRTRIE 219
+ + + D + S Y KGIG + +++ +
Sbjct: 180 RLWEITPFYQKSAEEICALFDSVYVS---FY--KGIGGIAGAILAGNDDFVQEAKIWK-- 232
Query: 220 AQIHGGGHEYGLR-SGTLA-------THQIVGMGEAFRLARIEMKEELKRI 262
+ +GG L +I M E F A+ + E
Sbjct: 233 -RRYGG----DLISLYPYILSADYYFEKRIGKMAEYFEAAK-GLAERFNSC 277
Score = 51.9 bits (125), Expect = 2e-06
Identities = 41/231 (17%), Positives = 74/231 (32%), Gaps = 55/231 (23%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV-----TYLKP 1514
SG T + +A++ +K + + H + E DG + L
Sbjct: 70 PSG-TMAQQIALR--IWADRKENRRVAYHPLSH------LEIHEQDGLKELQQITPLLLG 120
Query: 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAA 1570
N L+T+ ++ V + L EI G + + +I E C +G+ H D A
Sbjct: 121 TANQLLTIDDIKSLRE-PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGA 179
Query: 1571 ---QAVGKIDINIQNY--KVDLMSFSAHKIYGPKGIGAL----------YIRRNPRTRIE 1615
+ + + D + S Y KGIG + +++ +
Sbjct: 180 RLWEITPFYQKSAEEICALFDSVYVS---FY--KGIGGIAGAILAGNDDFVQEAKIWK-- 232
Query: 1616 AQIHGGGHEYGLR-SGTLA-------THQIVGMGEAFRLARIEMKEELKRI 1658
+ +GG L +I M E F A+ + E
Sbjct: 233 -RRYGG----DLISLYPYILSADYYFEKRIGKMAEYFEAAK-GLAERFNSC 277
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 50.7 bits (122), Expect = 4e-06
Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 30/171 (17%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G V ++ + +L L I + L + + G++QP+ +G++C
Sbjct: 116 GADVRTIEGPPDRPFSLETLARAIELHQPKC-LFLTHGDSSSGLLQPLEGVGQICHQHDC 174
Query: 168 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 213
+ DA ++ + + +++D L + + PK + + RR
Sbjct: 175 LLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPIS---ISPKALDVIRNRRT 231
Query: 214 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
+ G E T+A++ I + EA + EE
Sbjct: 232 KSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQ----IAEE 278
Score = 50.7 bits (122), Expect = 4e-06
Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 30/171 (17%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
G V ++ + +L L I + L + + G++QP+ +G++C
Sbjct: 116 GADVRTIEGPPDRPFSLETLARAIELHQPKC-LFLTHGDSSSGLLQPLEGVGQICHQHDC 174
Query: 1564 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 1609
+ DA ++ + + +++D L + + PK + + RR
Sbjct: 175 LLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPIS---ISPKALDVIRNRRT 231
Query: 1610 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
+ G E T+A++ I + EA + EE
Sbjct: 232 KSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQ----IAEE 278
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP;
2.58A {Klebsiella pneumoniae}
Length = 411
Score = 50.3 bits (121), Expect = 6e-06
Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 37/181 (20%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
V ++ + T Q+E+ + + ++ V + ++QP+ E+GE+CR
Sbjct: 111 RAEVHTIEVPWGEVFTPDQVEDAVKRIRPRL-LLTVQGDTSTTMLQPLAELGEICRRYDA 169
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYI----------RRNPRT 216
+F+ DA ++G + + +D +S K G P G + + R+
Sbjct: 170 LFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEE 229
Query: 217 RIEAQIHGGGHEYGLRS-------------------GTLATHQIVGMGEAFRLARIEMKE 257
I H G E + S T AT + G E RL + +
Sbjct: 230 GIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARL----ILQ 285
Query: 258 E 258
E
Sbjct: 286 E 286
Score = 50.3 bits (121), Expect = 6e-06
Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 37/181 (20%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
V ++ + T Q+E+ + + ++ V + ++QP+ E+GE+CR
Sbjct: 111 RAEVHTIEVPWGEVFTPDQVEDAVKRIRPRL-LLTVQGDTSTTMLQPLAELGEICRRYDA 169
Query: 1564 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYI----------RRNPRT 1612
+F+ DA ++G + + +D +S K G P G + + R+
Sbjct: 170 LFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEE 229
Query: 1613 RIEAQIHGGGHEYGLRS-------------------GTLATHQIVGMGEAFRLARIEMKE 1653
I H G E + S T AT + G E RL + +
Sbjct: 230 GIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARL----ILQ 285
Query: 1654 E 1654
E
Sbjct: 286 E 286
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 49.2 bits (118), Expect = 1e-05
Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 30/171 (17%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G V +K K ++L ++ + + V + L + GV+Q + +G LC
Sbjct: 117 GADVRVVKSKVGQSLSLDEIRDALLIHKPSV-LFLTQGDSSTGVLQGLEGVGALCHQHNC 175
Query: 168 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 213
+ D ++G + + +++D L + + + + + R
Sbjct: 176 LLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVS---FSHRAVERYKRRNT 232
Query: 214 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
+ G + T+++ + G+ EA + EE
Sbjct: 233 KVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAM----ACEE 279
Score = 49.2 bits (118), Expect = 1e-05
Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 30/171 (17%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
G V +K K ++L ++ + + V + L + GV+Q + +G LC
Sbjct: 117 GADVRVVKSKVGQSLSLDEIRDALLIHKPSV-LFLTQGDSSTGVLQGLEGVGALCHQHNC 175
Query: 1564 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 1609
+ D ++G + + +++D L + + + + + R
Sbjct: 176 LLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVS---FSHRAVERYKRRNT 232
Query: 1610 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
+ G + T+++ + G+ EA + EE
Sbjct: 233 KVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAM----ACEE 279
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A
{Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Length = 384
Score = 48.8 bits (117), Expect = 2e-05
Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 30/171 (17%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
V L+P + ++EE++ + V L + E GV +P+ ++ R
Sbjct: 100 PVNVKVLRPSPGDYVKPGEVEEEVRKSEYKL-VALTHVETSTGVREPVKDVINKIRKYVE 158
Query: 168 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 213
+ D +VG ++ + + VD L PK + L + +
Sbjct: 159 LIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLL---LSPKALSILDSQNS 215
Query: 214 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
+ G T H I+ + EAFRL +++E
Sbjct: 216 IAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRL----IEKE 262
Score = 48.8 bits (117), Expect = 2e-05
Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 30/171 (17%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
V L+P + ++EE++ + V L + E GV +P+ ++ R
Sbjct: 100 PVNVKVLRPSPGDYVKPGEVEEEVRKSEYKL-VALTHVETSTGVREPVKDVINKIRKYVE 158
Query: 1564 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 1609
+ D +VG ++ + + VD L PK + L + +
Sbjct: 159 LIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLL---LSPKALSILDSQNS 215
Query: 1610 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
+ G T H I+ + EAFRL +++E
Sbjct: 216 IAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRL----IEKE 262
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 48.0 bits (115), Expect = 3e-05
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 20/165 (12%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
+ ++ N I + + + + + V + +++ G I PI IG L + G
Sbjct: 106 SPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGA 165
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIG-------ALYIRRNPRTRIE 219
DA + G + + ++ K D+ +K G P G+ A +
Sbjct: 166 YLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPR 225
Query: 220 ------AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
T + +I G+ A L E
Sbjct: 226 ASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL----YLNE 266
Score = 48.0 bits (115), Expect = 3e-05
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 20/165 (12%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
+ ++ N I + + + + + V + +++ G I PI IG L + G
Sbjct: 106 SPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGA 165
Query: 1564 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIG-------ALYIRRNPRTRIE 1615
DA + G + + ++ K D+ +K G P G+ A +
Sbjct: 166 YLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPR 225
Query: 1616 ------AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
T + +I G+ A L E
Sbjct: 226 ASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL----YLNE 266
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 46.9 bits (112), Expect = 6e-05
Identities = 35/171 (20%), Positives = 59/171 (34%), Gaps = 33/171 (19%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G V + + +L +L + + + + LV+ E G QP+ +GELCR G
Sbjct: 132 GADVRTISKPWGEVFSLEELRTALETHRPAI-LALVHAETSTGARQPLEGVGELCREFGT 190
Query: 168 IFHCDAAQAVGKIDINIQNYKVDL--------------MSFSAHKIYGPKGIGALYIRRN 213
+ D ++G + I + + VDL S + I L RR
Sbjct: 191 LLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFT---MSSRAIEKLQRRRT 247
Query: 214 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
+ + G Y T + + EA RL + +E
Sbjct: 248 KVANWYLDMNLLGKYWGSERVY---HHTAPINLYYALREALRL----IAQE 291
Score = 46.9 bits (112), Expect = 6e-05
Identities = 35/171 (20%), Positives = 59/171 (34%), Gaps = 33/171 (19%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
G V + + +L +L + + + + LV+ E G QP+ +GELCR G
Sbjct: 132 GADVRTISKPWGEVFSLEELRTALETHRPAI-LALVHAETSTGARQPLEGVGELCREFGT 190
Query: 1564 IFHCDAAQAVGKIDINIQNYKVDL--------------MSFSAHKIYGPKGIGALYIRRN 1609
+ D ++G + I + + VDL S + I L RR
Sbjct: 191 LLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFT---MSSRAIEKLQRRRT 247
Query: 1610 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
+ + G Y T + + EA RL + +E
Sbjct: 248 KVANWYLDMNLLGKYWGSERVY---HHTAPINLYYALREALRL----IAQE 291
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 47.0 bits (112), Expect = 7e-05
Identities = 50/363 (13%), Positives = 102/363 (28%), Gaps = 96/363 (26%)
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTE---------------HKSVLDSIRKL 106
+ S +ES +A+ A K E H SV +
Sbjct: 149 VLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLIS 208
Query: 107 ENDGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILEIGE 160
++ +L +N + L++ I D LV V + + + E+G
Sbjct: 209 ---LVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGP 265
Query: 161 LCRSKGVIFHCDAAQAVGKI----------DINIQNYKVDLMSFSAHK-IYGPKGIGALY 209
+C +G+ H DAA A I D +F+ K + +
Sbjct: 266 ICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE----YADSFTFNPSKWMMVHFDCTGFW 321
Query: 210 IRRNPRTRIEA---------QIHGGGH----EYGLRSG----------TLATHQIVGMGE 246
+ ++ + + G + + + + + +
Sbjct: 322 V-KDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQA 380
Query: 247 AFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL 306
R EM + + ++ EI + + F SL
Sbjct: 381 HVR-HGTEMAKYFESLVRNDPSF---------EIPAKRHLG-------LVVFRLKGPNSL 423
Query: 307 LMAIKDIAVSSGSA-CTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIK 364
+ +G A+++ ++ RFT+ +FTT +I
Sbjct: 424 TENVLKEIAKAGRLFLIPATIQDKLII--------------RFTVTSQFTTRDDILRDWN 469
Query: 365 LLK 367
L++
Sbjct: 470 LIR 472
Score = 47.0 bits (112), Expect = 7e-05
Identities = 50/363 (13%), Positives = 102/363 (28%), Gaps = 96/363 (26%)
Query: 1458 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTE---------------HKSVLDSIRKL 1502
+ S +ES +A+ A K E H SV +
Sbjct: 149 VLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLIS 208
Query: 1503 ENDGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILEIGE 1556
++ +L +N + L++ I D LV V + + + E+G
Sbjct: 209 ---LVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGP 265
Query: 1557 LCRSKGVIFHCDAAQAVGKI----------DINIQNYKVDLMSFSAHK-IYGPKGIGALY 1605
+C +G+ H DAA A I D +F+ K + +
Sbjct: 266 ICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE----YADSFTFNPSKWMMVHFDCTGFW 321
Query: 1606 IRRNPRTRIEA---------QIHGGGH----EYGLRSG----------TLATHQIVGMGE 1642
+ ++ + + G + + + + + +
Sbjct: 322 V-KDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQA 380
Query: 1643 AFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL 1702
R EM + + ++ EI + + F SL
Sbjct: 381 HVR-HGTEMAKYFESLVRNDPSF---------EIPAKRHLG-------LVVFRLKGPNSL 423
Query: 1703 LMAIKDIAVSSGSA-CTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIK 1760
+ +G A+++ ++ RFT+ +FTT +I
Sbjct: 424 TENVLKEIAKAGRLFLIPATIQDKLII--------------RFTVTSQFTTRDDILRDWN 469
Query: 1761 LLK 1763
L++
Sbjct: 470 LIR 472
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 46.9 bits (112), Expect = 7e-05
Identities = 30/176 (17%), Positives = 69/176 (39%), Gaps = 26/176 (14%)
Query: 124 ITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 181
+ L++ + + + +V + NE GV+ P+ E+ ++ + + DA A+G D
Sbjct: 132 VKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGAD 191
Query: 182 INIQNYKVDLMSFSAHKIYG-PKGIGAL--------YIRRNPRTR------IEAQIHGGG 226
I + +D++ S+ K +G P G+ + P + +
Sbjct: 192 IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEK 251
Query: 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEE--LKRILFLQKRLYNGLMESIEEI 280
T Q+ G+ A R+ +++ ++ L + ++ + E + EI
Sbjct: 252 EST---PSTPPMPQVFGINVALRI----IEKMGGKEKWLEMYEKRAKMVREGVREI 300
Score = 46.9 bits (112), Expect = 7e-05
Identities = 30/176 (17%), Positives = 69/176 (39%), Gaps = 26/176 (14%)
Query: 1520 ITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 1577
+ L++ + + + +V + NE GV+ P+ E+ ++ + + DA A+G D
Sbjct: 132 VKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGAD 191
Query: 1578 INIQNYKVDLMSFSAHKIYG-PKGIGAL--------YIRRNPRTR------IEAQIHGGG 1622
I + +D++ S+ K +G P G+ + P + +
Sbjct: 192 IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEK 251
Query: 1623 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEE--LKRILFLQKRLYNGLMESIEEI 1676
T Q+ G+ A R+ +++ ++ L + ++ + E + EI
Sbjct: 252 EST---PSTPPMPQVFGINVALRI----IEKMGGKEKWLEMYEKRAKMVREGVREI 300
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 46.8 bits (112), Expect = 7e-05
Identities = 31/160 (19%), Positives = 49/160 (30%), Gaps = 16/160 (10%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G L + + + + V LV+ E GV+ P IG L + G
Sbjct: 97 GLDPEVLDFPPGEPVDPEAVARALKRRRYRM-VALVHGETSTGVLNPAEAIGALAKEAGA 155
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEA------ 220
+F DA +G + +++ VD + K P G+ + R
Sbjct: 156 LFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYL 215
Query: 221 --QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
E G T + EA L + EE
Sbjct: 216 DLARVAEHWERGGYHHTTPVLLHYALLEALDL----VLEE 251
Score = 46.8 bits (112), Expect = 7e-05
Identities = 31/160 (19%), Positives = 49/160 (30%), Gaps = 16/160 (10%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
G L + + + + V LV+ E GV+ P IG L + G
Sbjct: 97 GLDPEVLDFPPGEPVDPEAVARALKRRRYRM-VALVHGETSTGVLNPAEAIGALAKEAGA 155
Query: 1564 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEA------ 1616
+F DA +G + +++ VD + K P G+ + R
Sbjct: 156 LFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYL 215
Query: 1617 --QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
E G T + EA L + EE
Sbjct: 216 DLARVAEHWERGGYHHTTPVLLHYALLEALDL----VLEE 251
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 46.9 bits (111), Expect = 8e-05
Identities = 67/385 (17%), Positives = 108/385 (28%), Gaps = 80/385 (20%)
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD----------------SIR 104
I T + + I K+ + + ++R
Sbjct: 92 TIPTHQGRGAEQIYIPVLI----KKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVR 147
Query: 105 KLENDGFRVTYLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEI-GVIQP---IL 156
+ T ++ G L LE I ++ + + +N G +
Sbjct: 148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLK 207
Query: 157 EIGELCRSKGVIFHCDAA---QAVGKIDINIQNYK--------------VDLMSFSAHKI 199
+ + + + D+A + I YK D+++ SA K
Sbjct: 208 AMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD 267
Query: 200 YGPKGIGAL------YIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 253
G L + R + G YG G VG+ + L +
Sbjct: 268 AMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWL 327
Query: 254 EMKEELKRILFLQKRLYNGLMESIEEIYING------DMNNRIPHNLNISFNFIEGESLL 307
RI +Q L +GL E G D +PH F L
Sbjct: 328 A-----YRIAQVQ-YLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACEL 381
Query: 308 MAIKDI-AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKL 365
+ I AV GS + G +R TI R T T+ +DF I+
Sbjct: 382 YKVAGIRAVEIGSFLLGRDPKT-------GKQLPCPAELLRLTIPRATYTQTHMDFIIEA 434
Query: 366 LK--------MKEFFMSYSEKVLDH 382
K +K +Y KVL H
Sbjct: 435 FKHVKENAANIKGLTFTYEPKVLRH 459
Score = 46.9 bits (111), Expect = 8e-05
Identities = 67/385 (17%), Positives = 108/385 (28%), Gaps = 80/385 (20%)
Query: 1457 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD----------------SIR 1500
I T + + I K+ + + ++R
Sbjct: 92 TIPTHQGRGAEQIYIPVLI----KKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVR 147
Query: 1501 KLENDGFRVTYLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEI-GVIQP---IL 1552
+ T ++ G L LE I ++ + + +N G +
Sbjct: 148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLK 207
Query: 1553 EIGELCRSKGVIFHCDAA---QAVGKIDINIQNYK--------------VDLMSFSAHKI 1595
+ + + + D+A + I YK D+++ SA K
Sbjct: 208 AMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD 267
Query: 1596 YGPKGIGAL------YIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 1649
G L + R + G YG G VG+ + L +
Sbjct: 268 AMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWL 327
Query: 1650 EMKEELKRILFLQKRLYNGLMESIEEIYING------DMNNRIPHNLNISFNFIEGESLL 1703
RI +Q L +GL E G D +PH F L
Sbjct: 328 A-----YRIAQVQ-YLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACEL 381
Query: 1704 MAIKDI-AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKL 1761
+ I AV GS + G +R TI R T T+ +DF I+
Sbjct: 382 YKVAGIRAVEIGSFLLGRDPKT-------GKQLPCPAELLRLTIPRATYTQTHMDFIIEA 434
Query: 1762 LK--------MKEFFMSYSEKVLDH 1778
K +K +Y KVL H
Sbjct: 435 FKHVKENAANIKGLTFTYEPKVLRH 459
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 46.5 bits (111), Expect = 8e-05
Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 30/171 (17%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G RV + K TL ++EE + ++ + LV+ E GV+QP+ GELC
Sbjct: 121 GARVHQMIKKPGEHYTLQEVEEGLAQHKPVL-LFLVHGESSTGVVQPLDGFGELCHRYQC 179
Query: 168 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 213
+ D+ ++G + I + +D L S + + K +Y R+
Sbjct: 180 LLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLIS---FNDKAKYKVYSRKT 236
Query: 214 PRTR------IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
A++ G E + T + + E+ L + E+
Sbjct: 237 KPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLAL----IAEQ 283
Score = 46.5 bits (111), Expect = 8e-05
Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 30/171 (17%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
G RV + K TL ++EE + ++ + LV+ E GV+QP+ GELC
Sbjct: 121 GARVHQMIKKPGEHYTLQEVEEGLAQHKPVL-LFLVHGESSTGVVQPLDGFGELCHRYQC 179
Query: 1564 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 1609
+ D+ ++G + I + +D L S + + K +Y R+
Sbjct: 180 LLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLIS---FNDKAKYKVYSRKT 236
Query: 1610 PRTR------IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
A++ G E + T + + E+ L + E+
Sbjct: 237 KPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLAL----IAEQ 283
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 45.3 bits (108), Expect = 2e-04
Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 23/151 (15%)
Query: 142 VMLVNNE--IGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK- 198
+++ +E V+ + IGE C+ + F CD A N+ D+M + K
Sbjct: 148 LLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKV 207
Query: 199 IYGPKGIGALYIRRNPRTRIEA----------QIHGGGHEYGLRSGTLATHQIVGMGEAF 248
+ P GI + + R+E + E G T A ++ + E
Sbjct: 208 LACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERL 267
Query: 249 RLARIEMKEE------LKRILFLQKRLYNGL 273
+ E+K+ + RI +
Sbjct: 268 K----EIKKHGGADAEVARIASQAADFRAKI 294
Score = 45.3 bits (108), Expect = 2e-04
Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 23/151 (15%)
Query: 1538 VMLVNNE--IGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK- 1594
+++ +E V+ + IGE C+ + F CD A N+ D+M + K
Sbjct: 148 LLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKV 207
Query: 1595 IYGPKGIGALYIRRNPRTRIEA----------QIHGGGHEYGLRSGTLATHQIVGMGEAF 1644
+ P GI + + R+E + E G T A ++ + E
Sbjct: 208 LACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERL 267
Query: 1645 RLARIEMKEE------LKRILFLQKRLYNGL 1669
+ E+K+ + RI +
Sbjct: 268 K----EIKKHGGADAEVARIASQAADFRAKI 294
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 45.5 bits (108), Expect = 2e-04
Identities = 52/359 (14%), Positives = 103/359 (28%), Gaps = 90/359 (25%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTE---------------HKSVLDSIRKLEN 108
A+E+ +A+ A +R + T+ H SV +
Sbjct: 145 QGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG-- 202
Query: 109 DGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILEIGELC 162
G ++ + + S L+E + D L+ +V +LE+G +C
Sbjct: 203 -GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPIC 261
Query: 163 RSKGVIFHCDAAQA-VGKIDINIQNY-----KVDLMSFSAHK-IYGPKGIGALYIRRNPR 215
+ + H DAA A I ++ D +F+ HK + A+++ +
Sbjct: 262 HEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWV-KRRT 320
Query: 216 TRIEA---------QIHGGGH------EYGLRSG----------TLATHQIVGMGEAFRL 250
A H G + L G + + G+ R
Sbjct: 321 DLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIR- 379
Query: 251 ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI 310
+++ E + + R E+ + + F + L A+
Sbjct: 380 KHVQLSHEFEAFVLQDPRF---------EVCAEVTLG-------LVCFRLKGSDGLNEAL 423
Query: 311 KDIAVSSGSA-CTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLK 367
+ S+ L +VL RF I R + + ++
Sbjct: 424 LERINSARKIHLVPCRLRGQFVL--------------RFAICSRKVESGHVRLAWEHIR 468
Score = 45.5 bits (108), Expect = 2e-04
Identities = 52/359 (14%), Positives = 103/359 (28%), Gaps = 90/359 (25%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTE---------------HKSVLDSIRKLEN 1504
A+E+ +A+ A +R + T+ H SV +
Sbjct: 145 QGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG-- 202
Query: 1505 DGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILEIGELC 1558
G ++ + + S L+E + D L+ +V +LE+G +C
Sbjct: 203 -GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPIC 261
Query: 1559 RSKGVIFHCDAAQA-VGKIDINIQNY-----KVDLMSFSAHK-IYGPKGIGALYIRRNPR 1611
+ + H DAA A I ++ D +F+ HK + A+++ +
Sbjct: 262 HEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWV-KRRT 320
Query: 1612 TRIEA---------QIHGGGH------EYGLRSG----------TLATHQIVGMGEAFRL 1646
A H G + L G + + G+ R
Sbjct: 321 DLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIR- 379
Query: 1647 ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI 1706
+++ E + + R E+ + + F + L A+
Sbjct: 380 KHVQLSHEFEAFVLQDPRF---------EVCAEVTLG-------LVCFRLKGSDGLNEAL 423
Query: 1707 KDIAVSSGSA-CTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLK 1763
+ S+ L +VL RF I R + + ++
Sbjct: 424 LERINSARKIHLVPCRLRGQFVL--------------RFAICSRKVESGHVRLAWEHIR 468
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 45.4 bits (108), Expect = 2e-04
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G V L+ + + + +I + V +V+ E G I P+ IGE CR++
Sbjct: 109 GANVHMLECEWGTVFDPEDIIREIKKVKPKI-VAMVHGETSTGRIHPLKAIGEACRTEDA 167
Query: 168 IFHCDAAQAVGKIDINIQNYKVD 190
+F DA +G ++ + +K+D
Sbjct: 168 LFIVDAVATIGGCEVKVDEWKID 190
Score = 45.4 bits (108), Expect = 2e-04
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
G V L+ + + + +I + V +V+ E G I P+ IGE CR++
Sbjct: 109 GANVHMLECEWGTVFDPEDIIREIKKVKPKI-VAMVHGETSTGRIHPLKAIGEACRTEDA 167
Query: 1564 IFHCDAAQAVGKIDINIQNYKVD 1586
+F DA +G ++ + +K+D
Sbjct: 168 LFIVDAVATIGGCEVKVDEWKID 190
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 44.6 bits (106), Expect = 3e-04
Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 60/233 (25%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV-----TYLKP 118
SG T + +A++ + + + H + E DG + T L
Sbjct: 69 PSG-TMAQQVALR--IWSDETDNRTVAYHPLCH------LEIHEQDGLKELHPIETILVG 119
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAA 174
+ L+TL +++ D + + L EI GV + I CR +G+ H D A
Sbjct: 120 AADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGA 177
Query: 175 ---QAVGKIDINIQNY--KVDLMS--FSAHKIYGPKGIGAL----------YIRRNPRTR 217
+ + + D + F KG+G + + + +
Sbjct: 178 RLFEMLPYYEKTAAEIAGLFDSIYISFY-------KGLGGIAGAILAGPAAFCQTARIWK 230
Query: 218 IEAQIHGGGHEYGLR-SGTLA-------THQIVGMGEAFRLARIEMKEELKRI 262
+ +GG L + MG+ + A+ ++ E+ +
Sbjct: 231 ---RRYGG----DLISLYPYIVSADYYYELRKDRMGQYYEQAK-QLAEQFNAL 275
Score = 44.6 bits (106), Expect = 3e-04
Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 60/233 (25%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV-----TYLKP 1514
SG T + +A++ + + + H + E DG + T L
Sbjct: 69 PSG-TMAQQVALR--IWSDETDNRTVAYHPLCH------LEIHEQDGLKELHPIETILVG 119
Query: 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAA 1570
+ L+TL +++ D + + L EI GV + I CR +G+ H D A
Sbjct: 120 AADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGA 177
Query: 1571 ---QAVGKIDINIQNY--KVDLMS--FSAHKIYGPKGIGAL----------YIRRNPRTR 1613
+ + + D + F KG+G + + + +
Sbjct: 178 RLFEMLPYYEKTAAEIAGLFDSIYISFY-------KGLGGIAGAILAGPAAFCQTARIWK 230
Query: 1614 IEAQIHGGGHEYGLR-SGTLA-------THQIVGMGEAFRLARIEMKEELKRI 1658
+ +GG L + MG+ + A+ ++ E+ +
Sbjct: 231 ---RRYGG----DLISLYPYIVSADYYYELRKDRMGQYYEQAK-QLAEQFNAL 275
>1iug_A Putative aspartate aminotransferase; wild type,
pyridoxal-5'-phosphate form, riken structural
genomics/proteomics initiative, RSGI; HET: LLP; 2.20A
{Thermus thermophilus} SCOP: c.67.1.3
Length = 352
Score = 44.5 bits (106), Expect = 3e-04
Identities = 22/151 (14%), Positives = 53/151 (35%), Gaps = 16/151 (10%)
Query: 142 VMLVNNE--IGVIQPILEIGELCRSKG--VIFHCDAAQAVGKIDINIQNYKVDLMSFSAH 197
++LV++E G + + + + K + D ++ ++ ++ VD + +
Sbjct: 125 LLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQ 184
Query: 198 KIYG-PKGIGALYIRRNPRTRIEA-------QIHGGGHEYGLRSGTLATHQIVGMGEAFR 249
K P G+G + + R++ + G + T A + ++ +
Sbjct: 185 KGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLE 244
Query: 250 LARIEMKEELKRILFLQKRLYNGLMESIEEI 280
+ L+ L L+ L EE
Sbjct: 245 E----VLPRLEEHLALKAWQNALLYGVGEEG 271
Score = 44.5 bits (106), Expect = 3e-04
Identities = 22/151 (14%), Positives = 53/151 (35%), Gaps = 16/151 (10%)
Query: 1538 VMLVNNE--IGVIQPILEIGELCRSKG--VIFHCDAAQAVGKIDINIQNYKVDLMSFSAH 1593
++LV++E G + + + + K + D ++ ++ ++ VD + +
Sbjct: 125 LLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQ 184
Query: 1594 KIYG-PKGIGALYIRRNPRTRIEA-------QIHGGGHEYGLRSGTLATHQIVGMGEAFR 1645
K P G+G + + R++ + G + T A + ++ +
Sbjct: 185 KGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLE 244
Query: 1646 LARIEMKEELKRILFLQKRLYNGLMESIEEI 1676
+ L+ L L+ L EE
Sbjct: 245 E----VLPRLEEHLALKAWQNALLYGVGEEG 271
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 43.9 bits (103), Expect = 9e-04
Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 22/150 (14%)
Query: 39 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS 98
++A +A++ AD R + T+G + +N + +A G I+ + HKS
Sbjct: 193 HSGPHKEAEQYIARVFNAD-RSYMVTNGTSTANKIVGMYSA----PAGSTILIDRNCHKS 247
Query: 99 VLDSIRKLENDGFRVTYLKPKNN-----GLITLSQLEEKICSDTI--------LVSVMLV 145
+ + Y +P N G I S+ + + + V ++
Sbjct: 248 LTHLMMMS---DVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVIT 304
Query: 146 N-NEIGVIQPILEIGELCRSKGVIFHCDAA 174
N G++ I + K + F
Sbjct: 305 NSTYDGLLYNTDFIKKTLDVKSIHFDSAWV 334
Score = 43.9 bits (103), Expect = 9e-04
Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 22/150 (14%)
Query: 1435 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS 1494
++A +A++ AD R + T+G + +N + +A G I+ + HKS
Sbjct: 193 HSGPHKEAEQYIARVFNAD-RSYMVTNGTSTANKIVGMYSA----PAGSTILIDRNCHKS 247
Query: 1495 VLDSIRKLENDGFRVTYLKPKNN-----GLITLSQLEEKICSDTI--------LVSVMLV 1541
+ + Y +P N G I S+ + + + V ++
Sbjct: 248 LTHLMMMS---DVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVIT 304
Query: 1542 N-NEIGVIQPILEIGELCRSKGVIFHCDAA 1570
N G++ I + K + F
Sbjct: 305 NSTYDGLLYNTDFIKKTLDVKSIHFDSAWV 334
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A
{Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Length = 338
Score = 42.8 bits (101), Expect = 0.001
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 2533 FNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWG 2592
G +L DA + I I C + C TC G ++ + ED L
Sbjct: 18 ICIAQGETLSDAAYRQQINIPMDC-REGECGTCRAFCESGNYDM-PEDNYIEDALTPEE- 74
Query: 2593 LEENSRLSCQ 2602
++ L+CQ
Sbjct: 75 AQQGYVLACQ 84
Score = 37.4 bits (87), Expect = 0.054
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 1137 FNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAW 1195
G +L DA + I I C + C TC G ++ + ED L
Sbjct: 18 ICIAQGETLSDAAYRQQINIPMDC-REGECGTCRAFCESGNYDM-PEDNYIEDALTPEE 74
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 42.8 bits (100), Expect = 0.002
Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 26/156 (16%)
Query: 39 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS 98
E A A++ AD + G++ +NN G ++ + HKS
Sbjct: 171 HEGPAVAAEKHAARVYNAD-KTYFVLGGSSNANNTVTSALV----SNGDLVLFDRNNHKS 225
Query: 99 VLDSIRKLENDGFRVTYLKPKNN-----GLITLSQLEEKICSDTILVS------------ 141
V +S + G R YL+ N G I S +EK +
Sbjct: 226 VYNSALAMA--GGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFR 283
Query: 142 -VMLVN-NEIGVIQPILEIGELCRSKGVIFHCDAAQ 175
++ G I E+ + D+A
Sbjct: 284 LAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAW 319
Score = 42.8 bits (100), Expect = 0.002
Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 26/156 (16%)
Query: 1435 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS 1494
E A A++ AD + G++ +NN G ++ + HKS
Sbjct: 171 HEGPAVAAEKHAARVYNAD-KTYFVLGGSSNANNTVTSALV----SNGDLVLFDRNNHKS 225
Query: 1495 VLDSIRKLENDGFRVTYLKPKNN-----GLITLSQLEEKICSDTILVS------------ 1537
V +S + G R YL+ N G I S +EK +
Sbjct: 226 VYNSALAMA--GGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFR 283
Query: 1538 -VMLVN-NEIGVIQPILEIGELCRSKGVIFHCDAAQ 1571
++ G I E+ + D+A
Sbjct: 284 LAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAW 319
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 42.8 bits (100), Expect = 0.002
Identities = 30/193 (15%), Positives = 55/193 (28%), Gaps = 40/193 (20%)
Query: 39 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS 98
A ++ A++ AD R G + SN ++ ++ + HKS
Sbjct: 203 HTGAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM----TDNDVVVVDRNCHKS 257
Query: 99 VLDSIRKLENDGFRVTYLKPKNNGL----------ITLSQLEEKI--------CSDTILV 140
+ + G + Y+ P N + L++KI +
Sbjct: 258 IEQGLMLT---GAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPS 314
Query: 141 SVMLVN-NEIGVIQPILEIGELCRSKGVIFHCDAA-------------QAVGKIDINIQN 186
++ N GV E +L H D A + + N
Sbjct: 315 YCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHN 374
Query: 187 YKVDLMSFSAHKI 199
+ S HK+
Sbjct: 375 GPTVFATHSTHKL 387
Score = 42.8 bits (100), Expect = 0.002
Identities = 30/193 (15%), Positives = 55/193 (28%), Gaps = 40/193 (20%)
Query: 1435 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS 1494
A ++ A++ AD R G + SN ++ ++ + HKS
Sbjct: 203 HTGAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM----TDNDVVVVDRNCHKS 257
Query: 1495 VLDSIRKLENDGFRVTYLKPKNNGL----------ITLSQLEEKI--------CSDTILV 1536
+ + G + Y+ P N + L++KI +
Sbjct: 258 IEQGLMLT---GAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPS 314
Query: 1537 SVMLVN-NEIGVIQPILEIGELCRSKGVIFHCDAA-------------QAVGKIDINIQN 1582
++ N GV E +L H D A + + N
Sbjct: 315 YCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHN 374
Query: 1583 YKVDLMSFSAHKI 1595
+ S HK+
Sbjct: 375 GPTVFATHSTHKL 387
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ,
structural protein; 2.10A {Thermotoga maritima} SCOP:
c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Length = 344
Score = 41.7 bits (99), Expect = 0.003
Identities = 60/234 (25%), Positives = 93/234 (39%), Gaps = 70/234 (29%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGK--IYVGKKAKITQNIDP 697
IGID GT N+LV + I V+ + PS++ + VG +AK P
Sbjct: 6 IGIDLGTANTLVFLRGKGI--VVNE-------PSVIAIDSTTGEILKVGLEAKNMIGKTP 56
Query: 698 KNTISSIKRFIARDLKN--INTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKK 755
I +I R +++ I D+ ML + FI K
Sbjct: 57 AT-IKAI-----RPMRDGVIA------DYTVALVML----------------RYFI--NK 86
Query: 756 IAENAVNNRIFGA---VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 812
A VI VP D++R+ +A AG + + L+ EP +AAI L+
Sbjct: 87 ----AKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLN 142
Query: 813 KNIFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG----DS-NLGGDDFD 859
+ E G V D+GGGT +++ V+S+G +S + GD+ D
Sbjct: 143 --VEEPSGNMVV-DIGGGTTEVA----------VISLGSIVTWESIRIAGDEMD 183
Score = 41.7 bits (99), Expect = 0.003
Identities = 60/234 (25%), Positives = 93/234 (39%), Gaps = 70/234 (29%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGK--IYVGKKAKITQNIDP 2093
IGID GT N+LV + I V+ + PS++ + VG +AK P
Sbjct: 6 IGIDLGTANTLVFLRGKGI--VVNE-------PSVIAIDSTTGEILKVGLEAKNMIGKTP 56
Query: 2094 KNTISSIKRFIARDLKN--INTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKK 2151
I +I R +++ I D+ ML + FI K
Sbjct: 57 AT-IKAI-----RPMRDGVIA------DYTVALVML----------------RYFI--NK 86
Query: 2152 IAENAVNNRIFGA---VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 2208
A VI VP D++R+ +A AG + + L+ EP +AAI L+
Sbjct: 87 ----AKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLN 142
Query: 2209 KNIFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG----DS-NLGGDDFD 2255
+ E G V D+GGGT +++ V+S+G +S + GD+ D
Sbjct: 143 --VEEPSGNMVV-DIGGGTTEVA----------VISLGSIVTWESIRIAGDEMD 183
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate
aminotransferase, pyridoxal-5-phosphate, SAD, glycolate
pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae}
SCOP: c.67.1.3
Length = 385
Score = 41.5 bits (98), Expect = 0.003
Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 30/174 (17%)
Query: 110 GFRVTYLKPKNNG-LITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKG 166
G +V ++P G + L + EK+ ++ V + + + V+ + I + +
Sbjct: 109 GAQVDVVRPLKIGESVPLELITEKLSQNSYGA-VTVTHVDTSTAVLSDLKAISQAIKQTS 167
Query: 167 --VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIG-----------ALYIRR 212
F DA ++G + + VD ++ K G P G+ AL +
Sbjct: 168 PETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSK 227
Query: 213 NPRTR--------IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
N + G T I + A + + EE
Sbjct: 228 NGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE----ILEE 277
Score = 41.5 bits (98), Expect = 0.003
Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 30/174 (17%)
Query: 1506 GFRVTYLKPKNNG-LITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKG 1562
G +V ++P G + L + EK+ ++ V + + + V+ + I + +
Sbjct: 109 GAQVDVVRPLKIGESVPLELITEKLSQNSYGA-VTVTHVDTSTAVLSDLKAISQAIKQTS 167
Query: 1563 --VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIG-----------ALYIRR 1608
F DA ++G + + VD ++ K G P G+ AL +
Sbjct: 168 PETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSK 227
Query: 1609 NPRTR--------IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
N + G T I + A + + EE
Sbjct: 228 NGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE----ILEE 277
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 40.5 bits (95), Expect = 0.007
Identities = 54/357 (15%), Positives = 101/357 (28%), Gaps = 89/357 (24%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTE---------------HKSVLDSIRKLEN 108
A+ES +A+ GA K K + E H SV +
Sbjct: 145 QGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLG-- 202
Query: 109 DGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILEIGELC 162
G ++ + N + + LE+ I D L+ V + E G +
Sbjct: 203 -GVKLRSV-QSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVG 260
Query: 163 RSKGVIFHCDAAQA-VGKIDINIQNY-----KVDLMSFSAHK-IYGPKGIGALYIRRNPR 215
+ H DAA A I ++ D +F+ HK + A+++ ++P
Sbjct: 261 NKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWL-KDPS 319
Query: 216 TRIEA---------QIHGGGH----EYGLRSG----------TLATHQIVGMGEAFRLAR 252
+ A G + + G L + + + R
Sbjct: 320 WVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIR-RH 378
Query: 253 IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKD 312
++ + R E+ +M + F A+
Sbjct: 379 CNFAKQFGDLCVADSRF---------ELAAEINMG-------LVCFRLKGSNERNEALLK 422
Query: 313 IAVSSGSA-CTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLK 367
G A ++ Y L R I RFT ++++++ K +
Sbjct: 423 RINGRGHIHLVPAKIKDVYFL--------------RMAICSRFTQSEDMEYSWKEVS 465
Score = 40.5 bits (95), Expect = 0.007
Identities = 54/357 (15%), Positives = 101/357 (28%), Gaps = 89/357 (24%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTE---------------HKSVLDSIRKLEN 1504
A+ES +A+ GA K K + E H SV +
Sbjct: 145 QGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLG-- 202
Query: 1505 DGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILEIGELC 1558
G ++ + N + + LE+ I D L+ V + E G +
Sbjct: 203 -GVKLRSV-QSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVG 260
Query: 1559 RSKGVIFHCDAAQA-VGKIDINIQNY-----KVDLMSFSAHK-IYGPKGIGALYIRRNPR 1611
+ H DAA A I ++ D +F+ HK + A+++ ++P
Sbjct: 261 NKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWL-KDPS 319
Query: 1612 TRIEA---------QIHGGGH----EYGLRSG----------TLATHQIVGMGEAFRLAR 1648
+ A G + + G L + + + R
Sbjct: 320 WVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIR-RH 378
Query: 1649 IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKD 1708
++ + R E+ +M + F A+
Sbjct: 379 CNFAKQFGDLCVADSRF---------ELAAEINMG-------LVCFRLKGSNERNEALLK 422
Query: 1709 IAVSSGSA-CTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLK 1763
G A ++ Y L R I RFT ++++++ K +
Sbjct: 423 RINGRGHIHLVPAKIKDVYFL--------------RMAICSRFTQSEDMEYSWKEVS 465
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative, PSI;
2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 40.3 bits (95), Expect = 0.008
Identities = 38/216 (17%), Positives = 75/216 (34%), Gaps = 49/216 (22%)
Query: 1400 DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYG---WTAEKAIEKARNEVAQLIYADPRE 1456
D + + P+++D M R A YG A+ A + +L+ +
Sbjct: 21 DYSVGMHPKILDLMA---RDNMTQHAG----YGQDSHCAK-----AARLIGELLERPDAD 68
Query: 1457 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK--- 1513
+ + SG T++N +A + + + +I Q H I E T K
Sbjct: 69 VHFISGGTQTNLIAC--SLAL--RPWEAVIATQLGH------ISTHETGAIEATGHKVVT 118
Query: 1514 -PKNNGLITLSQLEEKI-------CSDTILVSVMLVNN-EIGVIQP---ILEIGELCRSK 1561
P +G + ++ +E + LV + N E+G + +I C+
Sbjct: 119 APCPDGKLRVADIESALHENRSEHMVIPKLVY--ISNTTEVGTQYTKQELEDISASCKEH 176
Query: 1562 GVIFHCD-----AAQAVGKIDINIQNYK--VDLMSF 1590
G+ D +A + D+ + + D+
Sbjct: 177 GLYLFLDGARLASALSSPVNDLTLADIARLTDMFYI 212
Score = 40.3 bits (95), Expect = 0.008
Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 34/173 (19%)
Query: 44 EKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI 103
KA + +L+ ++ + SG T++N +A + + + +I Q H I
Sbjct: 52 AKAARLIGELLERPDADVHFISGGTQTNLIAC--SLAL--RPWEAVIATQLGH------I 101
Query: 104 RKLENDGFRVTYLK----PKNNGLITLSQLEEKI-------CSDTILVSVMLVNN-EIGV 151
E T K P +G + ++ +E + LV + N E+G
Sbjct: 102 STHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVY--ISNTTEVGT 159
Query: 152 IQP---ILEIGELCRSKGVIFHCD-----AAQAVGKIDINIQNYK--VDLMSF 194
+ +I C+ G+ D +A + D+ + + D+
Sbjct: 160 QYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYI 212
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 40.0 bits (94), Expect = 0.009
Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 32/137 (23%)
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD------------SIRK---- 105
I++ G SN +I A R K+ V+T+ + + SI+K
Sbjct: 155 IFSPGGAISNMYSIMAA------RYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAA 208
Query: 106 --LENDGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILE 157
D + +K G I + E KI V + G PI E
Sbjct: 209 LGFGTDNVIL--IKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQE 266
Query: 158 IGELCRSKGVIFHCDAA 174
I ++C + H DAA
Sbjct: 267 IADICEKYNLWLHVDAA 283
Score = 40.0 bits (94), Expect = 0.009
Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 32/137 (23%)
Query: 1458 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD------------SIRK---- 1501
I++ G SN +I A R K+ V+T+ + + SI+K
Sbjct: 155 IFSPGGAISNMYSIMAA------RYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAA 208
Query: 1502 --LENDGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILE 1553
D + +K G I + E KI V + G PI E
Sbjct: 209 LGFGTDNVIL--IKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQE 266
Query: 1554 IGELCRSKGVIFHCDAA 1570
I ++C + H DAA
Sbjct: 267 IADICEKYNLWLHVDAA 283
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 39.8 bits (93), Expect = 0.010
Identities = 45/380 (11%), Positives = 115/380 (30%), Gaps = 95/380 (25%)
Query: 634 KNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIY--------- 684
+ + ++G++ G + +L + + P LK P L +G +
Sbjct: 10 RPRVEALGLEIGAS-ALKLVEVSGNPPALK-ALASRPTPP--GLLMEGMVAEPAALAQEI 65
Query: 685 ------VGKKAK-----------ITQNI-DPKNTISSIKRFIARDLKNINTNSFPYDFQN 726
+ + I + I PK + ++ + + + P+
Sbjct: 66 KELLLEARTRKRYVVTALSNLAVILRPIQVPKMPLKEMEEAVRWEAERY----IPFPIDE 121
Query: 727 KFGMLHIKTI-------SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDI 779
+L + G + + ++A + AV +
Sbjct: 122 V--VLDFAPLTPLSEVQEGEQVQVMVAA--------ARQEAVAGVL-------------- 157
Query: 780 QRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK-LDKNIFEGIFAVYDLGGGTFDISILKFK 838
A + AGL + L +P + + + +F V D+G + + + +
Sbjct: 158 ------EALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVL--LR 209
Query: 839 NGVFKVLSVGGDSNLGGDDFDYCL---FSWIVKNAFLKKLSYKDVNILMIKSREIKELLS 895
+ V L G DF + F+ + A K +Y + + + +
Sbjct: 210 GDKPLAVRV---LTLSGKDFTEAIARSFNLDLLAAEEVKRTYGMATLPTEDEELLLDFDA 266
Query: 896 YQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVIL 955
+ + S +I + ++ + R++ L + L
Sbjct: 267 ERE------RYSPGRIYDA---IRPVLVELTQELRRSLEFFRIQLEE-----ASPEVGYL 312
Query: 956 VGGSTRMKHIHEGVSNFFKT 975
+GG ++++ + +++
Sbjct: 313 LGGGSKLRGLASLLTDTLGV 332
Score = 39.8 bits (93), Expect = 0.010
Identities = 45/380 (11%), Positives = 115/380 (30%), Gaps = 95/380 (25%)
Query: 2030 KNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIY--------- 2080
+ + ++G++ G + +L + + P LK P L +G +
Sbjct: 10 RPRVEALGLEIGAS-ALKLVEVSGNPPALK-ALASRPTPP--GLLMEGMVAEPAALAQEI 65
Query: 2081 ------VGKKAK-----------ITQNI-DPKNTISSIKRFIARDLKNINTNSFPYDFQN 2122
+ + I + I PK + ++ + + + P+
Sbjct: 66 KELLLEARTRKRYVVTALSNLAVILRPIQVPKMPLKEMEEAVRWEAERY----IPFPIDE 121
Query: 2123 KFGMLHIKTI-------SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDI 2175
+L + G + + ++A + AV +
Sbjct: 122 V--VLDFAPLTPLSEVQEGEQVQVMVAA--------ARQEAVAGVL-------------- 157
Query: 2176 QRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK-LDKNIFEGIFAVYDLGGGTFDISILKFK 2234
A + AGL + L +P + + + +F V D+G + + + +
Sbjct: 158 ------EALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVL--LR 209
Query: 2235 NGVFKVLSVGGDSNLGGDDFDYCL---FSWIVKNAFLKKLSYKDVNILMIKSREIKELLS 2291
+ V L G DF + F+ + A K +Y + + + +
Sbjct: 210 GDKPLAVRV---LTLSGKDFTEAIARSFNLDLLAAEEVKRTYGMATLPTEDEELLLDFDA 266
Query: 2292 YQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVIL 2351
+ + S +I + ++ + R++ L + L
Sbjct: 267 ERE------RYSPGRIYDA---IRPVLVELTQELRRSLEFFRIQLEE-----ASPEVGYL 312
Query: 2352 VGGSTRMKHIHEGVSNFFKT 2371
+GG ++++ + +++
Sbjct: 313 LGGGSKLRGLASLLTDTLGV 332
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural
genomics consortium, pyridoxal phosphate; HET: PLP;
2.30A {Homo sapiens}
Length = 498
Score = 40.2 bits (94), Expect = 0.010
Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 18/151 (11%)
Query: 38 TAEKAIEKARNEVAQ-------LIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHII 90
+A + + R +VA + ADP I T+GA++ + +K K ++
Sbjct: 126 SASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVM 185
Query: 91 TVQTEHKSVLDSIRKLENDGFRVTY-LKPKNNGLITLSQLEEKICSDTILVSVMLV---- 145
++ I E D +V Y L +N + +++L + ++
Sbjct: 186 IPIPQYPLYSAVIS--ELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIIN 243
Query: 146 -NNEIGVIQP---ILEIGELCRSKGVIFHCD 172
N G +Q I ++ + + D
Sbjct: 244 PGNPTGQVQSRKCIEDVIHFAWEEKLFLLAD 274
Score = 40.2 bits (94), Expect = 0.010
Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 18/151 (11%)
Query: 1434 TAEKAIEKARNEVAQ-------LIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHII 1486
+A + + R +VA + ADP I T+GA++ + +K K ++
Sbjct: 126 SASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVM 185
Query: 1487 TVQTEHKSVLDSIRKLENDGFRVTY-LKPKNNGLITLSQLEEKICSDTILVSVMLV---- 1541
++ I E D +V Y L +N + +++L + ++
Sbjct: 186 IPIPQYPLYSAVIS--ELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIIN 243
Query: 1542 -NNEIGVIQP---ILEIGELCRSKGVIFHCD 1568
N G +Q I ++ + + D
Sbjct: 244 PGNPTGQVQSRKCIEDVIHFAWEEKLFLLAD 274
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 39.5 bits (93), Expect = 0.011
Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 44/191 (23%)
Query: 1400 DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYG---WTAEKAIEKARNEVAQLIYADPRE 1456
D P V ++ + G YG TA+ + + ++ D E
Sbjct: 15 DNIAGASPEVAQALV---KHSSGQAGP----YGTDELTAQ-----VKRKFCEIFERD-VE 61
Query: 1457 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLE-------NDGFRV 1509
+ T +N L + +A +I H I E ++G ++
Sbjct: 62 VFLVPTGTAANALCL--SAMT--PPWGNIYCHPASH------INNDECGAPEFFSNGAKL 111
Query: 1510 TYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNN-EIGVIQP---ILEIGELCR 1559
+ + + +L E+ T V + E+G I I IG++C+
Sbjct: 112 MTV-DGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCK 170
Query: 1560 SKGVIFHCDAA 1570
S + H D +
Sbjct: 171 SSSLGLHMDGS 181
Score = 39.1 bits (92), Expect = 0.014
Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 46/193 (23%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYG---WTAEKAIEKARNEVAQLIYADP 58
D P V ++ + G YG TA+ + + ++ D
Sbjct: 15 DNI--AGASPEVAQALV---KHSSGQAGP----YGTDELTAQ-----VKRKFCEIFERD- 59
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLE-------NDGF 111
E+ T +N L + +A +I H I E ++G
Sbjct: 60 VEVFLVPTGTAANALCL--SAMT--PPWGNIYCHPASH------INNDECGAPEFFSNGA 109
Query: 112 RVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNN-EIGVIQP---ILEIGEL 161
++ + + + +L E+ T V + E+G I I IG++
Sbjct: 110 KLMTV-DGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDV 168
Query: 162 CRSKGVIFHCDAA 174
C+S + H D +
Sbjct: 169 CKSSSLGLHMDGS 181
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
{Staphylococcus aureus}
Length = 446
Score = 39.8 bits (93), Expect = 0.012
Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 21/145 (14%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-- 121
+G T I+ + ++ I+ + HKSVL ++ +++ +
Sbjct: 78 VNGTTSGILSVIQSFS----QKKGDILMARNVHKSVLHALDIS---QQEGHFIETHQSPL 130
Query: 122 ----GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV 177
+ LS+L +L N G + E+ + + D A
Sbjct: 131 TNHYNKVNLSRLNNDGHKLVVLTYP----NYYGETFNVEEVIKSLHQLNIPVLIDEAHGA 186
Query: 178 GKIDINIQ----NYKVDLMSFSAHK 198
NY+ D + S HK
Sbjct: 187 HFGLQGFPDSTLNYQADYVVQSFHK 211
Score = 39.8 bits (93), Expect = 0.012
Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 21/145 (14%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-- 1517
+G T I+ + ++ I+ + HKSVL ++ +++ +
Sbjct: 78 VNGTTSGILSVIQSFS----QKKGDILMARNVHKSVLHALDIS---QQEGHFIETHQSPL 130
Query: 1518 ----GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV 1573
+ LS+L +L N G + E+ + + D A
Sbjct: 131 TNHYNKVNLSRLNNDGHKLVVLTYP----NYYGETFNVEEVIKSLHQLNIPVLIDEAHGA 186
Query: 1574 GKIDINIQ----NYKVDLMSFSAHK 1594
NY+ D + S HK
Sbjct: 187 HFGLQGFPDSTLNYQADYVVQSFHK 211
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein,
ashka family, ATPase; 2.20A {Carboxydothermus
hydrogenoformans}
Length = 631
Score = 39.8 bits (92), Expect = 0.015
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 2537 SGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEEN 2596
+L +AL I I+ C + C C V + +G + +++++ + + +
Sbjct: 19 ENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGY----- 73
Query: 2597 SRLSCQ 2602
L+CQ
Sbjct: 74 -VLACQ 78
Score = 38.3 bits (88), Expect = 0.040
Identities = 10/55 (18%), Positives = 25/55 (45%)
Query: 1141 SGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAW 1195
+L +AL I I+ C + C C V + +G + +++++ + + +
Sbjct: 19 ENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGY 73
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 39.9 bits (93), Expect = 0.015
Identities = 42/264 (15%), Positives = 74/264 (28%), Gaps = 84/264 (31%)
Query: 96 HKSVLDS--IRKLENDGFRVTYLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEI 149
S+L+ IR +E + F P+ +I +EE + S + +
Sbjct: 895 ETSILEHSGIRLIEPELFNGY--NPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDK 952
Query: 150 GVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG--PKG--- 204
I I E GE K + A I + F + G P G
Sbjct: 953 VDIFEIPETGE-YSVKLL------KGATLYIP--------KALRFDR-LVAGQIPTGWNA 996
Query: 205 ----IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELK 260
I I + + L V + EAF + I E+
Sbjct: 997 KTYGISDDIISQVDPI-----TL-----FVL----------VSVVEAFIASGITDPYEMY 1036
Query: 261 RILFLQKRLYN------GLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIA 314
+ + + N G + ++ ++ D P + E I ++
Sbjct: 1037 KYV-HVSEVGNCSGSGMGGVSALRGMFK--DRFKDEP---VQNDILQE-----SFINTMS 1085
Query: 315 --VSS------G------SACTSA 324
V+ G AC ++
Sbjct: 1086 AWVNMLLISSSGPIKTPVGACATS 1109
Score = 39.9 bits (93), Expect = 0.015
Identities = 42/264 (15%), Positives = 74/264 (28%), Gaps = 84/264 (31%)
Query: 1492 HKSVLDS--IRKLENDGFRVTYLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEI 1545
S+L+ IR +E + F P+ +I +EE + S + +
Sbjct: 895 ETSILEHSGIRLIEPELFNGY--NPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDK 952
Query: 1546 GVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG--PKG--- 1600
I I E GE K + A I + F + G P G
Sbjct: 953 VDIFEIPETGE-YSVKLL------KGATLYIP--------KALRFDR-LVAGQIPTGWNA 996
Query: 1601 ----IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELK 1656
I I + + L V + EAF + I E+
Sbjct: 997 KTYGISDDIISQVDPI-----TL-----FVL----------VSVVEAFIASGITDPYEMY 1036
Query: 1657 RILFLQKRLYN------GLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIA 1710
+ + + N G + ++ ++ D P + E I ++
Sbjct: 1037 KYV-HVSEVGNCSGSGMGGVSALRGMFK--DRFKDEP---VQNDILQE-----SFINTMS 1085
Query: 1711 --VSS------G------SACTSA 1720
V+ G AC ++
Sbjct: 1086 AWVNMLLISSSGPIKTPVGACATS 1109
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 38.9 bits (91), Expect = 0.024
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 32/137 (23%)
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD------------SIRK---- 105
I+ G + SN A+ A R + + L SI+K
Sbjct: 169 IFCPGGSISNMYAVNLA------RYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAF 222
Query: 106 --LENDGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILE 157
L D RV +K G + LE +I V ++ +G P+
Sbjct: 223 LGLGTDSVRV--VKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEA 280
Query: 158 IGELCRSKGVIFHCDAA 174
I ++C+ G+ H DAA
Sbjct: 281 IADVCQRHGLWLHVDAA 297
Score = 38.9 bits (91), Expect = 0.024
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 32/137 (23%)
Query: 1458 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD------------SIRK---- 1501
I+ G + SN A+ A R + + L SI+K
Sbjct: 169 IFCPGGSISNMYAVNLA------RYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAF 222
Query: 1502 --LENDGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILE 1553
L D RV +K G + LE +I V ++ +G P+
Sbjct: 223 LGLGTDSVRV--VKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEA 280
Query: 1554 IGELCRSKGVIFHCDAA 1570
I ++C+ G+ H DAA
Sbjct: 281 IADVCQRHGLWLHVDAA 297
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 37.7 bits (88), Expect = 0.050
Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 42/143 (29%)
Query: 64 TSGATESNNLAIKGA-AHFYKKRGKHIITVQTE---------------HKSV-------- 99
TSG T+SN + + A K H I H +V
Sbjct: 164 TSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMG 223
Query: 100 --LDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGV 151
++ ++ + +G + +++L+E I L+ +V + G
Sbjct: 224 LGEKAVMTVDANA----------DGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGA 273
Query: 152 IQPILEIGELCRSKGVIFHCDAA 174
I + I ++ + H D A
Sbjct: 274 IDDLDFIADMAVKHDMWMHVDGA 296
Score = 37.7 bits (88), Expect = 0.050
Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 42/143 (29%)
Query: 1460 TSGATESNNLAIKGA-AHFYKKRGKHIITVQTE---------------HKSV-------- 1495
TSG T+SN + + A K H I H +V
Sbjct: 164 TSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMG 223
Query: 1496 --LDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGV 1547
++ ++ + +G + +++L+E I L+ +V + G
Sbjct: 224 LGEKAVMTVDANA----------DGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGA 273
Query: 1548 IQPILEIGELCRSKGVIFHCDAA 1570
I + I ++ + H D A
Sbjct: 274 IDDLDFIADMAVKHDMWMHVDGA 296
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 36.1 bits (84), Expect = 0.15
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 42/148 (28%)
Query: 118 PKNNGLITLSQLEEKICSD------TILVSV-MLVNNEIGVIQPILEI---GELCRSKGV 167
P NG + + + I T L+++ N G + P+ I + + G+
Sbjct: 108 PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGI 167
Query: 168 IFHCDAAQ---AVGKIDINIQNY--KVDLMS--FSAHKIYGPKGIGA----------LYI 210
H D A+ A + ++ Y D + S KG+ A +I
Sbjct: 168 NVHIDGARIFNASIASGVPVKEYAGYADSVMFCLS-------KGLCAPVGSVVVGDRDFI 220
Query: 211 RRNPRTRIEAQIHGGGHEYGLR-SGTLA 237
R + R ++ GG G+R +G LA
Sbjct: 221 ERARKAR---KMLGG----GMRQAGVLA 241
Score = 36.1 bits (84), Expect = 0.15
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 42/148 (28%)
Query: 1514 PKNNGLITLSQLEEKICSD------TILVSV-MLVNNEIGVIQPILEI---GELCRSKGV 1563
P NG + + + I T L+++ N G + P+ I + + G+
Sbjct: 108 PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGI 167
Query: 1564 IFHCDAAQ---AVGKIDINIQNY--KVDLMS--FSAHKIYGPKGIGA----------LYI 1606
H D A+ A + ++ Y D + S KG+ A +I
Sbjct: 168 NVHIDGARIFNASIASGVPVKEYAGYADSVMFCLS-------KGLCAPVGSVVVGDRDFI 220
Query: 1607 RRNPRTRIEAQIHGGGHEYGLR-SGTLA 1633
R + R ++ GG G+R +G LA
Sbjct: 221 ERARKAR---KMLGG----GMRQAGVLA 241
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET:
DCS; 2.71A {Hordeum vulgare}
Length = 500
Score = 35.9 bits (83), Expect = 0.16
Identities = 28/157 (17%), Positives = 60/157 (38%), Gaps = 21/157 (13%)
Query: 32 NHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAHFYKKR 85
++ + I R+ +A I A+ +I T GA+ +L ++ +
Sbjct: 125 RATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQL---LIRNE 181
Query: 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTY-LKPKNNGLITLSQLEEKIC---SDTILVS 141
I+ ++ SI + G V Y L + S +++++ S I V
Sbjct: 182 KDGILVPIPQYPLYSASIA--LHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVR 239
Query: 142 VMLV---NNEIGVIQP---ILEIGELCRSKGVIFHCD 172
++V N G + +I + C+++G++ D
Sbjct: 240 ALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLAD 276
Score = 35.9 bits (83), Expect = 0.16
Identities = 28/157 (17%), Positives = 60/157 (38%), Gaps = 21/157 (13%)
Query: 1428 NHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAHFYKKR 1481
++ + I R+ +A I A+ +I T GA+ +L ++ +
Sbjct: 125 RATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQL---LIRNE 181
Query: 1482 GKHIITVQTEHKSVLDSIRKLENDGFRVTY-LKPKNNGLITLSQLEEKIC---SDTILVS 1537
I+ ++ SI + G V Y L + S +++++ S I V
Sbjct: 182 KDGILVPIPQYPLYSASIA--LHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVR 239
Query: 1538 VMLV---NNEIGVIQP---ILEIGELCRSKGVIFHCD 1568
++V N G + +I + C+++G++ D
Sbjct: 240 ALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLAD 276
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 35.6 bits (83), Expect = 0.19
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 17/145 (11%)
Query: 35 YGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITV 92
YGW + V+QL Y P +I+ T+GAT +N L + G H+I++
Sbjct: 59 YGWIE--GSPAFKKSVSQL-YTGVKPEQILQTNGATGANLLVLYSLIE----PGDHVISL 111
Query: 93 QTEHKSVLDSIRKLENDGFRVTY--LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIG 150
++ + D + L G V ++ +N L L +L + I T ++ + NN G
Sbjct: 112 YPTYQQLYDIPKSL---GAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTG 168
Query: 151 VIQP---ILEIGELCRSKGVIFHCD 172
+ + E+ E+ G D
Sbjct: 169 AVMDRTYLEELVEIASEVGAYILSD 193
Score = 35.6 bits (83), Expect = 0.19
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 17/145 (11%)
Query: 1431 YGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITV 1488
YGW + V+QL Y P +I+ T+GAT +N L + G H+I++
Sbjct: 59 YGWIE--GSPAFKKSVSQL-YTGVKPEQILQTNGATGANLLVLYSLIE----PGDHVISL 111
Query: 1489 QTEHKSVLDSIRKLENDGFRVTY--LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIG 1546
++ + D + L G V ++ +N L L +L + I T ++ + NN G
Sbjct: 112 YPTYQQLYDIPKSL---GAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTG 168
Query: 1547 VIQP---ILEIGELCRSKGVIFHCD 1568
+ + E+ E+ G D
Sbjct: 169 AVMDRTYLEELVEIASEVGAYILSD 193
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.40
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 886 KSREIKELLSYQSSVKLNVKLSDKKI-VNITID 917
+ + +K+L Q+S+KL S + + T++
Sbjct: 18 EKQALKKL---QASLKLYADDSAPALAIKATME 47
Score = 33.4 bits (75), Expect = 0.40
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 2282 KSREIKELLSYQSSVKLNVKLSDKKI-VNITID 2313
+ + +K+L Q+S+KL S + + T++
Sbjct: 18 EKQALKKL---QASLKLYADDSAPALAIKATME 47
Score = 33.0 bits (74), Expect = 0.55
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 17/45 (37%)
Query: 175 QAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIE 219
QA+ K+ ++ K+Y AL I + +E
Sbjct: 20 QALKKLQ-------------ASLKLYADDSAPALAI----KATME 47
Score = 33.0 bits (74), Expect = 0.55
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 17/45 (37%)
Query: 1571 QAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIE 1615
QA+ K+ ++ K+Y AL I + +E
Sbjct: 20 QALKKLQ-------------ASLKLYADDSAPALAI----KATME 47
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 34.6 bits (80), Expect = 0.49
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 785 KNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFK- 843
N + + +L + S A G+ V +LG + +KNGV
Sbjct: 174 YNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGV-VVVNLGYNFTGLIA--YKNGVPIK 230
Query: 844 --VLSVGGD 850
+ VG
Sbjct: 231 ISYVPVGMK 239
Score = 34.6 bits (80), Expect = 0.49
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 2181 KNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFK- 2239
N + + +L + S A G+ V +LG + +KNGV
Sbjct: 174 YNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGV-VVVNLGYNFTGLIA--YKNGVPIK 230
Query: 2240 --VLSVGGD 2246
+ VG
Sbjct: 231 ISYVPVGMK 239
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 33.3 bits (77), Expect = 1.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 47 RNEVAQLIYADPREIIWTSGATESNNLAIKG 77
R +A+ +P ++ TSGATE+ + ++
Sbjct: 67 REALAEEFAVEPESVVVTSGATEALYVLLQS 97
Score = 33.3 bits (77), Expect = 1.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 1443 RNEVAQLIYADPREIIWTSGATESNNLAIKG 1473
R +A+ +P ++ TSGATE+ + ++
Sbjct: 67 REALAEEFAVEPESVVVTSGATEALYVLLQS 97
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 32.5 bits (74), Expect = 1.8
Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 53/222 (23%)
Query: 84 KRGKHIITVQTE--HKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVS 141
K K I + H S+ S + + Y + + ++ KI DT+++
Sbjct: 97 KPKKVIHYLPELPGHPSIERSCKIVN-----AKYFESDK-----VGEILNKIDKDTLVI- 145
Query: 142 VMLV---NNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQN----YKVDLMSF 194
+ + ++ ++ ++ ++K I D A + Q DL+
Sbjct: 146 -ITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVT 204
Query: 195 SAHKIYGPKGIGAL--------YIRRNPRTRIEAQIHGGGHEYGLRSG---------TLA 237
S K+ G L I GL + L
Sbjct: 205 STDKLMEGPRGGLLAGKKELVDKIYIEGTKF------------GLEAQPPLLAGIYRALK 252
Query: 238 THQIVGMGEAFRLAR---IEMKEELKRILFLQKRLYNGLMES 276
+ + +AF A+ + E+L + L N + E
Sbjct: 253 NFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYER 294
Score = 32.5 bits (74), Expect = 1.8
Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 53/222 (23%)
Query: 1480 KRGKHIITVQTE--HKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVS 1537
K K I + H S+ S + + Y + + ++ KI DT+++
Sbjct: 97 KPKKVIHYLPELPGHPSIERSCKIVN-----AKYFESDK-----VGEILNKIDKDTLVI- 145
Query: 1538 VMLV---NNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQN----YKVDLMSF 1590
+ + ++ ++ ++ ++K I D A + Q DL+
Sbjct: 146 -ITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVT 204
Query: 1591 SAHKIYGPKGIGAL--------YIRRNPRTRIEAQIHGGGHEYGLRSG---------TLA 1633
S K+ G L I GL + L
Sbjct: 205 STDKLMEGPRGGLLAGKKELVDKIYIEGTKF------------GLEAQPPLLAGIYRALK 252
Query: 1634 THQIVGMGEAFRLAR---IEMKEELKRILFLQKRLYNGLMES 1672
+ + +AF A+ + E+L + L N + E
Sbjct: 253 NFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYER 294
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2)
tetramer, riken structural genomics/proteomi initiative,
RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP:
c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Length = 474
Score = 32.2 bits (74), Expect = 2.8
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVN-NEIGVIQP-ILEIGELCRSKGV 167
G++V + G + L L+ ++ ++ML N N +G+ + ILEI LC+ GV
Sbjct: 177 GYQVREIPSGPEGEVDLEALKRELGPHV--AALMLTNPNTLGLFERRILEISRLCKEAGV 234
Query: 168 IFHCDAA 174
+ D A
Sbjct: 235 QLYYDGA 241
Score = 32.2 bits (74), Expect = 2.8
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVN-NEIGVIQP-ILEIGELCRSKGV 1563
G++V + G + L L+ ++ ++ML N N +G+ + ILEI LC+ GV
Sbjct: 177 GYQVREIPSGPEGEVDLEALKRELGPHV--AALMLTNPNTLGLFERRILEISRLCKEAGV 234
Query: 1564 IFHCDAA 1570
+ D A
Sbjct: 235 QLYYDGA 241
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 31.6 bits (72), Expect = 4.1
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 13/111 (11%)
Query: 40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ---TEH 96
+ +K + +L + I T+ T + + + I+ + +
Sbjct: 95 DLWQQKMLRDNPELSIDNMSRPIVTNALTH----GLSLVGDLFVNQDDTILLPEHNWGNY 150
Query: 97 KSVLDSIRKLENDGFRV-TYLKPKNNGLITLSQLEEKICSDTILVSVMLVN 146
K V +G + TY +G T L E + S +M++N
Sbjct: 151 KLVF-----NTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILN 196
Score = 31.6 bits (72), Expect = 4.1
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 13/111 (11%)
Query: 1436 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ---TEH 1492
+ +K + +L + I T+ T + + + I+ + +
Sbjct: 95 DLWQQKMLRDNPELSIDNMSRPIVTNALTH----GLSLVGDLFVNQDDTILLPEHNWGNY 150
Query: 1493 KSVLDSIRKLENDGFRV-TYLKPKNNGLITLSQLEEKICSDTILVSVMLVN 1542
K V +G + TY +G T L E + S +M++N
Sbjct: 151 KLVF-----NTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILN 196
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 31.4 bits (72), Expect = 4.5
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK----H 88
H ++++ E A +A+ + SG +E+ A+K A ++ +RG+
Sbjct: 65 HGSQFSSDVLEEYA-GRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFK 123
Query: 89 II 90
+I
Sbjct: 124 VI 125
Score = 31.4 bits (72), Expect = 4.5
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 1429 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK----H 1484
H ++++ E A +A+ + SG +E+ A+K A ++ +RG+
Sbjct: 65 HGSQFSSDVLEEYA-GRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFK 123
Query: 1485 II 1486
+I
Sbjct: 124 VI 125
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine
dinucleotide, iron-sulfur, metal-binding, molybdopterin;
HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A*
2vpw_A* 2vpy_A*
Length = 765
Score = 31.1 bits (71), Expect = 5.4
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 4/38 (10%)
Query: 25 FG-NPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 61
G + H A A+++ DPR
Sbjct: 206 IGHHIGEDTHNTQLQD---FALALKNGAKVVVVDPRFS 240
Score = 31.1 bits (71), Expect = 5.4
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 4/38 (10%)
Query: 1421 FG-NPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 1457
G + H A A+++ DPR
Sbjct: 206 IGHHIGEDTHNTQLQD---FALALKNGAKVVVVDPRFS 240
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 31.0 bits (71), Expect = 6.3
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG----KH 88
+ A A ++A L D I +T+G + + + A++ + + G K
Sbjct: 90 SPWYMATSPAARLA-EKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKR 148
Query: 89 IIT 91
II
Sbjct: 149 IIV 151
Score = 31.0 bits (71), Expect = 6.3
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 1429 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG----KH 1484
+ A A ++A L D I +T+G + + + A++ + + G K
Sbjct: 90 SPWYMATSPAARLA-EKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKR 148
Query: 1485 IIT 1487
II
Sbjct: 149 IIV 151
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family,
iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter
acetylenicus}
Length = 727
Score = 31.1 bits (71), Expect = 6.8
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 27 NPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 61
N ++ N + + ++ A +LI DPR
Sbjct: 170 NLSNHNWVSQF---NDLKAALKRGCKLIVLDPRRT 201
Score = 31.1 bits (71), Expect = 6.8
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 1423 NPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 1457
N ++ N + + ++ A +LI DPR
Sbjct: 170 NLSNHNWVSQF---NDLKAALKRGCKLIVLDPRRT 201
>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2,
prote structure initiative; 2.40A {Agrobacterium
tumefaciens} SCOP: a.295.1.1
Length = 323
Score = 30.1 bits (67), Expect = 8.7
Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 29/123 (23%)
Query: 548 DQDASVKLSTY-------LNKAYSILKDPFLRSIYLCKLNGIDLNTKLNL--NFSHDFLE 598
D + V+L+ Y + L D L + T NL F+ ++
Sbjct: 191 DDNNGVRLALYFERKAPTIKSGLDFLADDALAQV---------FRTTFNLPDAFAAADVD 241
Query: 599 QQMKWRETLSIIKNKKDKVK-------FMALLQISEPDD----ISVKNKCVSIGIDFGTT 647
+Q E IK+ +D K F + ++ P ++V GI
Sbjct: 242 KQAALIEKSINIKDLQDPEKVGKLLERFTIMWEMQNPSTTYDPLAVFGSSSGYGISPDLL 301
Query: 648 NSL 650
S+
Sbjct: 302 ISI 304
Score = 30.1 bits (67), Expect = 8.7
Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 29/123 (23%)
Query: 1944 DQDASVKLSTY-------LNKAYSILKDPFLRSIYLCKLNGIDLNTKLNL--NFSHDFLE 1994
D + V+L+ Y + L D L + T NL F+ ++
Sbjct: 191 DDNNGVRLALYFERKAPTIKSGLDFLADDALAQV---------FRTTFNLPDAFAAADVD 241
Query: 1995 QQMKWRETLSIIKNKKDKVK-------FMALLQISEPDD----ISVKNKCVSIGIDFGTT 2043
+Q E IK+ +D K F + ++ P ++V GI
Sbjct: 242 KQAALIEKSINIKDLQDPEKVGKLLERFTIMWEMQNPSTTYDPLAVFGSSSGYGISPDLL 301
Query: 2044 NSL 2046
S+
Sbjct: 302 ISI 304
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.391
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 39,808,863
Number of extensions: 2594097
Number of successful extensions: 7009
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6713
Number of HSP's successfully gapped: 284
Length of query: 2602
Length of database: 6,701,793
Length adjustment: 110
Effective length of query: 2492
Effective length of database: 3,630,483
Effective search space: 9047163636
Effective search space used: 9047163636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (29.1 bits)