BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15217
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 612 bits (1578), Expect = e-175, Method: Compositional matrix adjust.
Identities = 288/395 (72%), Positives = 334/395 (84%), Gaps = 2/395 (0%)
Query: 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARG 60
M+K KFERTKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+++DQID APEEKARG
Sbjct: 285 MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARG 344
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHI
Sbjct: 345 ITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI 404
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LL RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA ALE
Sbjct: 405 LLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE 464
Query: 181 GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVR 240
GD E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++
Sbjct: 465 GDAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIK 522
Query: 241 VGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300
VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+
Sbjct: 523 VGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT 582
Query: 301 IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVL 360
IKPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+
Sbjct: 583 IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIK 642
Query: 361 ITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKII 395
+ V LI+PIAM++GLRFAIREGGRTVGAGVV K++
Sbjct: 643 MVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 677
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 611 bits (1576), Expect = e-175, Method: Compositional matrix adjust.
Identities = 288/395 (72%), Positives = 334/395 (84%), Gaps = 2/395 (0%)
Query: 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARG 60
M+K KFERTKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+++DQID APEEKARG
Sbjct: 285 MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARG 344
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHI
Sbjct: 345 ITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI 404
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LL RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA ALE
Sbjct: 405 LLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE 464
Query: 181 GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVR 240
GD E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++
Sbjct: 465 GDAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIK 522
Query: 241 VGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300
VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+
Sbjct: 523 VGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT 582
Query: 301 IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVL 360
IKPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+
Sbjct: 583 IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIK 642
Query: 361 ITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKII 395
+ V LI+PIAM++GLRFAIREGGRTVGAGVV K++
Sbjct: 643 MVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 677
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 606 bits (1562), Expect = e-174, Method: Compositional matrix adjust.
Identities = 289/395 (73%), Positives = 334/395 (84%), Gaps = 2/395 (0%)
Query: 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARG 60
MAK KFERTKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+++DQID APEEKARG
Sbjct: 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHI
Sbjct: 61 ITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LL RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA ALE
Sbjct: 121 LLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE 180
Query: 181 GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVR 240
GD E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++
Sbjct: 181 GDAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIK 238
Query: 241 VGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300
VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+
Sbjct: 239 VGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT 298
Query: 301 IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVL 360
IKPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+
Sbjct: 299 IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIK 358
Query: 361 ITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKII 395
+ V LI+PIAM++GLRFAIREGGRTVGAGVV K++
Sbjct: 359 MVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 605 bits (1560), Expect = e-173, Method: Compositional matrix adjust.
Identities = 288/395 (72%), Positives = 334/395 (84%), Gaps = 2/395 (0%)
Query: 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARG 60
M+K KFERTKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+++DQID APEEKARG
Sbjct: 1 MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHI
Sbjct: 61 ITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LL RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA ALE
Sbjct: 121 LLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE 180
Query: 181 GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVR 240
GD E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++
Sbjct: 181 GDAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIK 238
Query: 241 VGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300
VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+
Sbjct: 239 VGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT 298
Query: 301 IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVL 360
IKPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+
Sbjct: 299 IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIK 358
Query: 361 ITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKII 395
+ V LI+PIAM++GLRFAIREGGRTVGAGVV K++
Sbjct: 359 MVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 604 bits (1557), Expect = e-173, Method: Compositional matrix adjust.
Identities = 288/394 (73%), Positives = 333/394 (84%), Gaps = 2/394 (0%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGI 61
AK KFERTKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+++DQID APEEKARGI
Sbjct: 1 AKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 60
Query: 62 TINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHIL 121
TINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHIL
Sbjct: 61 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 120
Query: 122 LARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEG 181
L RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA ALEG
Sbjct: 121 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG 180
Query: 182 DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241
D E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++V
Sbjct: 181 DAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 238
Query: 242 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 301
GEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+I
Sbjct: 239 GEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTI 298
Query: 302 KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLI 361
KPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+ +
Sbjct: 299 KPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKM 358
Query: 362 TVRLINPIAMEEGLRFAIREGGRTVGAGVVVKII 395
V LI+PIAM++GLRFAIREGGRTVGAGVV K++
Sbjct: 359 VVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 392
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 603 bits (1555), Expect = e-173, Method: Compositional matrix adjust.
Identities = 287/394 (72%), Positives = 333/394 (84%), Gaps = 2/394 (0%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGI 61
+K KFERTKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+++DQID APEEKARGI
Sbjct: 1 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 60
Query: 62 TINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHIL 121
TINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHIL
Sbjct: 61 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 120
Query: 122 LARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEG 181
L RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA ALEG
Sbjct: 121 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG 180
Query: 182 DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241
D E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++V
Sbjct: 181 DAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 238
Query: 242 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 301
GEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+I
Sbjct: 239 GEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTI 298
Query: 302 KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLI 361
KPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+ +
Sbjct: 299 KPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKM 358
Query: 362 TVRLINPIAMEEGLRFAIREGGRTVGAGVVVKII 395
V LI+PIAM++GLRFAIREGGRTVGAGVV K++
Sbjct: 359 VVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 392
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 603 bits (1554), Expect = e-173, Method: Compositional matrix adjust.
Identities = 287/394 (72%), Positives = 333/394 (84%), Gaps = 2/394 (0%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGI 61
+K KFERTKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+++DQID APEEKARGI
Sbjct: 1 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 60
Query: 62 TINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHIL 121
TINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHIL
Sbjct: 61 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 120
Query: 122 LARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEG 181
L RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA ALEG
Sbjct: 121 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG 180
Query: 182 DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241
D E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++V
Sbjct: 181 DAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 238
Query: 242 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 301
GEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+I
Sbjct: 239 GEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTI 298
Query: 302 KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLI 361
KPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+ +
Sbjct: 299 KPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKM 358
Query: 362 TVRLINPIAMEEGLRFAIREGGRTVGAGVVVKII 395
V LI+PIAM++GLRFAIREGGRTVGAGVV K++
Sbjct: 359 VVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 392
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 590 bits (1520), Expect = e-169, Method: Compositional matrix adjust.
Identities = 281/386 (72%), Positives = 326/386 (84%), Gaps = 2/386 (0%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE 69
KPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+++DQID APEEKARGITINT+H+E
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVE 60
Query: 70 YETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVP 129
Y+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHILL RQVGVP
Sbjct: 61 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 120
Query: 130 YIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQ 189
YI+VFLNK DM ++Y+FPG+D PI++GSA ALEGD E
Sbjct: 121 YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEA 178
Query: 190 SILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIG 249
IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++VGEE+EI+G
Sbjct: 179 KILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVG 238
Query: 250 IKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTG 309
IK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+IKPH F
Sbjct: 239 IKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFES 298
Query: 310 EIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPI 369
E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+ + V LI+PI
Sbjct: 299 EVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPI 358
Query: 370 AMEEGLRFAIREGGRTVGAGVVVKII 395
AM++GLRFAIREGGRTVGAGVV K++
Sbjct: 359 AMDDGLRFAIREGGRTVGAGVVAKVL 384
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 571 bits (1472), Expect = e-163, Method: Compositional matrix adjust.
Identities = 277/394 (70%), Positives = 320/394 (81%), Gaps = 16/394 (4%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGI 61
+K KFERTKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG ARGI
Sbjct: 1 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGG--------------AARGI 46
Query: 62 TINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHIL 121
TINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHIL
Sbjct: 47 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 106
Query: 122 LARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEG 181
L RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA ALEG
Sbjct: 107 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG 166
Query: 182 DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241
D E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++V
Sbjct: 167 DAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 224
Query: 242 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 301
GEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+I
Sbjct: 225 GEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTI 284
Query: 302 KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLI 361
KPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+ +
Sbjct: 285 KPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKM 344
Query: 362 TVRLINPIAMEEGLRFAIREGGRTVGAGVVVKII 395
V LI+PIAM++GLRFAIREGGRTVGAGVV K++
Sbjct: 345 VVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 378
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 542 bits (1396), Expect = e-154, Method: Compositional matrix adjust.
Identities = 273/405 (67%), Positives = 310/405 (76%), Gaps = 10/405 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 EMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T KT TGVEM RK L +G AGDN+GLLLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG + LP+ E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVRLPQGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396
MVMPGDNV TV LI P+A+EEGLRFAIREGGRTVGAGVV KI+E
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 541 bits (1393), Expect = e-154, Method: Compositional matrix adjust.
Identities = 272/406 (66%), Positives = 311/406 (76%), Gaps = 10/406 (2%)
Query: 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKAR 59
MAK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+AR
Sbjct: 1 MAKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERAR 60
Query: 60 GITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREH 119
GITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREH
Sbjct: 61 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREH 120
Query: 120 ILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLAL 179
ILLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LAL
Sbjct: 121 ILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLAL 180
Query: 180 E----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVT 231
E GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV T
Sbjct: 181 EQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVAT 240
Query: 232 GRVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVE 290
GR+ERG V+VG+E+EI+G+ +T +T TGVEM RK L +G AGDN+G+LLRG RE+VE
Sbjct: 241 GRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVE 300
Query: 291 RGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNK 350
RGQVLAKPGSI PH F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG ++LP
Sbjct: 301 RGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGV 360
Query: 351 EMVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396
EMVMPGDNV TV LI P+A+EEGLRFAIREGGRTVGAGVV KI+E
Sbjct: 361 EMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 540 bits (1392), Expect = e-154, Method: Compositional matrix adjust.
Identities = 272/405 (67%), Positives = 310/405 (76%), Gaps = 10/405 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 EMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T KT TGVEM RK L +G AGDN+GLLLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FF+ YRPQFYFRTTDVTG + LP+ E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396
MVMPGDNV TV LI P+A+EEGLRFAIREGGRTVGAGVV KI+E
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 540 bits (1390), Expect = e-154, Method: Compositional matrix adjust.
Identities = 272/405 (67%), Positives = 310/405 (76%), Gaps = 10/405 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 EMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T KT TGVEM RK L +G AGDN+GLLLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FF+ YRPQFYFRTTDVTG + LP+ E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396
MVMPGDNV TV LI P+A+EEGLRFAIREGGRTVGAGVV KI+E
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 539 bits (1389), Expect = e-154, Method: Compositional matrix adjust.
Identities = 272/405 (67%), Positives = 310/405 (76%), Gaps = 10/405 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T KT TGVEM RK L +G AGDN+G+LLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG ++LP E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396
MVMPGDNV TV LI P+A+EEGLRFAIREGGRTVGAGVV KI+E
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 539 bits (1389), Expect = e-154, Method: Compositional matrix adjust.
Identities = 272/405 (67%), Positives = 310/405 (76%), Gaps = 10/405 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T KT TGVEM RK L +G AGDN+G+LLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG ++LP E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396
MVMPGDNV TV LI P+A+EEGLRFAIREGGRTVGAGVV KI+E
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 539 bits (1389), Expect = e-153, Method: Compositional matrix adjust.
Identities = 272/405 (67%), Positives = 310/405 (76%), Gaps = 10/405 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T KT TGVEM RK L +G AGDN+G+LLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG ++LP E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396
MVMPGDNV TV LI P+A+EEGLRFAIREGGRTVGAGVV KI+E
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 539 bits (1388), Expect = e-153, Method: Compositional matrix adjust.
Identities = 272/405 (67%), Positives = 310/405 (76%), Gaps = 10/405 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T KT TGVEM RK L +G AGDN+G+LLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG ++LP E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396
MVMPGDNV TV LI P+A+EEGLRFAIREGGRTVGAGVV KI+E
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 539 bits (1388), Expect = e-153, Method: Compositional matrix adjust.
Identities = 271/405 (66%), Positives = 310/405 (76%), Gaps = 10/405 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T +T TGVEM RK L +G AGDN+G+LLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG ++LP E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396
MVMPGDNV TV LI P+A+EEGLRFAIREGGRTVGAGVV KI+E
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 538 bits (1387), Expect = e-153, Method: Compositional matrix adjust.
Identities = 271/405 (66%), Positives = 310/405 (76%), Gaps = 10/405 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T +T TGVEM RK L +G AGDN+G+LLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG ++LP E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396
MVMPGDNV TV LI P+A+EEGLRFAIREGGRTVGAGVV KI+E
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 505 bits (1300), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/336 (71%), Positives = 280/336 (83%), Gaps = 2/336 (0%)
Query: 60 GITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREH 119
GITINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREH
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 120 ILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLAL 179
ILL RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA AL
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL 120
Query: 180 EGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIV 239
EGD E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI+
Sbjct: 121 EGDAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 178
Query: 240 RVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299
+VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG
Sbjct: 179 KVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 238
Query: 300 SIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNV 359
+IKPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+
Sbjct: 239 TIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNI 298
Query: 360 LITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKII 395
+ V LI+PIAM++GLRFAIREGGRTVGAGVV K++
Sbjct: 299 KMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 334
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 501 bits (1289), Expect = e-142, Method: Compositional matrix adjust.
Identities = 240/336 (71%), Positives = 279/336 (83%), Gaps = 2/336 (0%)
Query: 60 GITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREH 119
GITINT+H+EY+T RHYAHVD PGHADY+KNMITGAAQMDGAILV +A DGPMPQTREH
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 120 ILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLAL 179
ILL RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA AL
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL 120
Query: 180 EGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIV 239
EGD E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI+
Sbjct: 121 EGDAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 178
Query: 240 RVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299
+VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG
Sbjct: 179 KVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 238
Query: 300 SIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNV 359
+IKPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+
Sbjct: 239 TIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNI 298
Query: 360 LITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKII 395
+ V LI+PIAM++GLRFAIREGGRTVGAGVV K++
Sbjct: 299 KMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 334
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 497 bits (1280), Expect = e-141, Method: Compositional matrix adjust.
Identities = 255/405 (62%), Positives = 294/405 (72%), Gaps = 10/405 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLS-KKFGGEAKSYDQIDAAPEEKARG 60
AK +F RTK H+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID A EE+ARG
Sbjct: 1 AKGEFIRTKRHVNVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDKAREERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDC GHADYIKNMITGAAQMDGAILV SAADG M QTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGV YIVVF+NK DM N+YEF G+++ +I+GSA LALE
Sbjct: 121 LLARQVGVRYIVVFMNKVDMVDDRELLDLVEMEVRDLLNQYEFRGDEVRVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YI T R +D FL+ VEDVF+I+GRGTV TG
Sbjct: 181 EMHKNRKTKRGENEWVDKIWELLDAIDEYIRTRVRDVDKRFLMRVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGI-KDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ ++T KT TGVEM RK L +G AGDN+GLLLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLARETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAK GSI H F +Y L K+EGGRHT FF+ YR QFYFRTTDVTG + L + E
Sbjct: 301 GQVLAKRGSITRHTKFEASVYILKKEEGGRHTGFFTGYRRQFYFRTTDVTGVVRLRQGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396
MVM GDNV TV LI +A+EEGLRFAIREGGRTVGAGVV KI+E
Sbjct: 361 MVMRGDNVTFTVELIKRVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 441 bits (1133), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/382 (54%), Positives = 274/382 (71%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE 69
KPH+NVGTIGHVDHGKTTLTAAI +L++ G + K Y++ID APEE+ARGITIN AH+E
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE 60
Query: 70 YETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVP 129
Y T ARHYAH DCPGHADY+KNMITG A +DG ILV +A DGPMPQTREH+LLARQ+GV
Sbjct: 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE 120
Query: 130 YIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQ 189
++VV++NKAD ++ + G + PII GSA ALE LG +
Sbjct: 121 HVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLK 180
Query: 190 SILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIG 249
S+ L A+DTYIP P R ++ FLLPVE V+SI GRGTVVTG +ERGI++ G+E E +G
Sbjct: 181 SVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLG 240
Query: 250 IKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTG 309
++T TG+EMF K LD+ +AGDN+G L+RG KRED+ RG V+AKPGSI+PH+
Sbjct: 241 HSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEA 300
Query: 310 EIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPI 369
++Y L+K+EGGRH PF S++ P + T D+ I LP KE+ MPG+++ +T+ L P+
Sbjct: 301 QVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPM 360
Query: 370 AMEEGLRFAIREGGRTVGAGVV 391
+E+G RF +R+G RT+G G+V
Sbjct: 361 ILEKGQRFTLRDGNRTIGTGLV 382
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust.
Identities = 209/390 (53%), Positives = 272/390 (69%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGI 61
AK + R KPH+NVGTIGHVDHGKTTLTAAI +L++ G + K Y++ID APEE+ARGI
Sbjct: 4 AKKTYVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGI 63
Query: 62 TINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHIL 121
TIN AH+EY T ARHYAH DCPGHADY+KN ITG A +DG ILV +A DGP PQTREH+L
Sbjct: 64 TINAAHVEYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLL 123
Query: 122 LARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEG 181
LARQ+GV ++VV++NKAD ++ + G + PII GSA ALE
Sbjct: 124 LARQIGVEHVVVYVNKADAVQDSEXVELVELEIRELLTEFGYKGEETPIIVGSALCALEQ 183
Query: 182 DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241
LG +S+ L A+DTYIP P R ++ FLLPVE V+SI GRGTVVTG +ERGI++
Sbjct: 184 RDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKK 243
Query: 242 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 301
G+E E +G ++T TG+E F K LD+ +AGDN+G L+RG KRED+ RG V AKPGSI
Sbjct: 244 GDECEFLGHSKNIRTVVTGIEXFHKSLDRAEAGDNLGALVRGLKREDLRRGLVXAKPGSI 303
Query: 302 KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLI 361
+PH+ ++Y L+K+EGGRH PF S++ P + T D I LP KE+ PG+++ +
Sbjct: 304 QPHQKVEAQVYILTKEEGGRHKPFVSHFXPVXFSLTWDXACRIILPPGKELAXPGEDLKL 363
Query: 362 TVRLINPIAMEEGLRFAIREGGRTVGAGVV 391
T+ L P +E+G RF +R+G RT+G G+V
Sbjct: 364 TLILRQPXILEKGQRFTLRDGNRTIGTGLV 393
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 188 bits (477), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 139/434 (32%), Positives = 214/434 (49%), Gaps = 59/434 (13%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAIATVL--------------SKKFGGEAKSYDQI-DAAP 54
KPH+N+ IGHVDHGK+TL + L +K G E+ + I D
Sbjct: 4 KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMK 63
Query: 55 EEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP 114
EE+ RGITI+ +++ETK + +D PGH D++KNMITGA+Q D AILV SA G
Sbjct: 64 EERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFE 123
Query: 115 -------QTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYE---FP 164
QTREH+LLAR +G+ I+V +NK D + +
Sbjct: 124 AGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQ 183
Query: 165 GNDIPIIKGSAKLALEGDTGPLGEQSI-------LSLSKALDTYIPTPNRAIDGAFLLPV 217
+ IP I S A +GD L E+S +L +ALD P P + +D +PV
Sbjct: 184 VDKIPFIPVS---AWKGDN--LIERSPNMPWYNGPTLVEALDQLQP-PAKPVDKPLRIPV 237
Query: 218 EDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNI 277
++V+SI G GTV GRVE G++RVG+ +++ + V +EM + L Q + GDNI
Sbjct: 238 QNVYSIPGAGTVPVGRVETGVLRVGD--KVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNI 295
Query: 278 GLLLRGTKREDVERGQV---LAKPGSIKPHKHFTGEIYALSKDEGGR--HTPFFSNYRPQ 332
G +RG + D++RG V L KP ++ + F I+ + +TP +
Sbjct: 296 GFAVRGVSKSDIKRGDVAGHLDKPPTVA--EEFEARIFVIWHPSAITVGYTPVIHVHTAS 353
Query: 333 FYFRTTDVTGSIE------LPKNKEMVMPGDNVLITVRLINPIAMEEGL------RFAIR 380
R ++ ++ + +N + + GD ++ + + P+ +E+ RFA+R
Sbjct: 354 VSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMR 413
Query: 381 EGGRTVGAGVVVKI 394
+ RTVG G+V +
Sbjct: 414 DMNRTVGIGIVTDV 427
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 187 bits (476), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 139/434 (32%), Positives = 214/434 (49%), Gaps = 59/434 (13%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAIATVL--------------SKKFGGEAKSYDQI-DAAP 54
KPH+N+ IGHVDHGK+TL + L +K G E+ + I D
Sbjct: 7 KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMK 66
Query: 55 EEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP 114
EE+ RGITI+ +++ETK + +D PGH D++KNMITGA+Q D AILV SA G
Sbjct: 67 EERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFE 126
Query: 115 -------QTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYE---FP 164
QTREH+LLAR +G+ I+V +NK D + +
Sbjct: 127 AGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQ 186
Query: 165 GNDIPIIKGSAKLALEGDTGPLGEQSI-------LSLSKALDTYIPTPNRAIDGAFLLPV 217
+ IP I S A +GD L E+S +L +ALD P P + +D +PV
Sbjct: 187 VDKIPFIPVS---AWKGDN--LIERSPNMPWYNGPTLVEALDQLQP-PAKPVDKPLRIPV 240
Query: 218 EDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNI 277
++V+SI G GTV GRVE G++RVG+ +++ + V +EM + L Q + GDNI
Sbjct: 241 QNVYSIPGAGTVPVGRVETGVLRVGD--KVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNI 298
Query: 278 GLLLRGTKREDVERGQV---LAKPGSIKPHKHFTGEIYALSKDEGGR--HTPFFSNYRPQ 332
G +RG + D++RG V L KP ++ + F I+ + +TP +
Sbjct: 299 GFAVRGVSKSDIKRGDVAGHLDKPPTVA--EEFEARIFVIWHPSAITVGYTPVIHVHTAS 356
Query: 333 FYFRTTDVTGSIE------LPKNKEMVMPGDNVLITVRLINPIAMEEGL------RFAIR 380
R ++ ++ + +N + + GD ++ + + P+ +E+ RFA+R
Sbjct: 357 VSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMR 416
Query: 381 EGGRTVGAGVVVKI 394
+ RTVG G+V +
Sbjct: 417 DMNRTVGIGIVTDV 430
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 187 bits (475), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 135/439 (30%), Positives = 211/439 (48%), Gaps = 69/439 (15%)
Query: 10 KPHINVGTIGHVDHGKTTL--------------TAAIATVLSKKFGGEAKSYD-QIDAAP 54
KPH+N+ IGHVDHGK+TL T A +KK G E++ + +D
Sbjct: 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLK 63
Query: 55 EEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP 114
EE+ RG+TIN + +ETK + +D PGH D++KNMITGA+Q D AILV SA G
Sbjct: 64 EERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 123
Query: 115 -------QTREHILLARQVGVPYIVVFLNKADMXX---XXXXXXXXXXXXXXXXNKYEFP 164
QTREHI+LA+ +G+ ++V +NK D+ Y F
Sbjct: 124 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFN 183
Query: 165 GND---IPIIKGSA------KLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLL 215
N +P++ S ++ GP +L + LD + P + +D +
Sbjct: 184 TNKVRFVPVVAPSGDNITHKSENMKWYNGP-------TLEEYLDQ-LELPPKPVDKPLRI 235
Query: 216 PVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGD 275
P++DV+SISG GTV GRVE G+++VG+ +I+ + +E +D+ + GD
Sbjct: 236 PIQDVYSISGVGTVPVGRVESGVLKVGD--KIVFMPAGKVGEVRSIETHHTKMDKAEPGD 293
Query: 276 NIGLLLRGTKREDVERGQVLAKPGSIKP-HKHFTGEIYALSKDEGGRHTPFFSNYRPQFY 334
NIG +RG +++D++RG V+ P + FT I + T + Y P +
Sbjct: 294 NIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVV-----WHPTALANGYTPVLH 348
Query: 335 FRTTDVTGSI-------------ELPKNKEMVMPGDNVLITVRLINPIAMEEGL------ 375
T V + E KN + + GD ++ + I P+ +E+
Sbjct: 349 VHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLG 408
Query: 376 RFAIREGGRTVGAGVVVKI 394
RFA+R+ G+TVG G++V +
Sbjct: 409 RFAMRDMGKTVGVGIIVDV 427
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 129/443 (29%), Positives = 190/443 (42%), Gaps = 68/443 (15%)
Query: 8 RTKPHINVGTIGHVDHGKTTLTA-------AIATVLSKKFGGEAKSYDQ--------IDA 52
+ K HINV IGHVD GK+T T I +KF EA + +D
Sbjct: 3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDK 62
Query: 53 APEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP 112
E+ RGITI+ A ++ET +D PGH D+IKNMITG +Q D AIL+ + G
Sbjct: 63 LKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE 122
Query: 113 MP-------QTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNK---YE 162
QTREH LLA +GV ++V +NK D K Y
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYN 182
Query: 163 -----------FPGNDI-------PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204
+ G+++ P KG K E G + +++L +A+D I
Sbjct: 183 PKTVPFVPISGWNGDNMIEATTNAPWYKGWEK---ETKAGVVKGKTLL---EAIDA-IEQ 235
Query: 205 PNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF 264
P+R D LP++DV+ I G GTV GRVE G+++ G + + V T VEM
Sbjct: 236 PSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG--MVVTFAPAGVTTEVKSVEMH 293
Query: 265 RKLLDQGQAGDNIGLLLRGTKREDVERGQVL--AKPGSIKPHKHFTGEIYALSK--DEGG 320
+ L+QG GDN+G ++ +++ RG V AK K F + L+
Sbjct: 294 HEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISA 353
Query: 321 RHTPFFSNYRPQFYFR------TTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEG 374
++P + R D +L + + + GD L+ P+ +E
Sbjct: 354 GYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAF 413
Query: 375 L------RFAIREGGRTVGAGVV 391
RFA+R+ +TV GV+
Sbjct: 414 SEYPPLGRFAVRDMRQTVAVGVI 436
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 145/292 (49%), Gaps = 29/292 (9%)
Query: 10 KPH-----INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN 64
+PH IN+G GH+DHGKTTL+ + E S D PE + RGITI+
Sbjct: 12 RPHMDFKNINLGIFGHIDHGKTTLSKVLT---------EIASTSAHDKLPESQKRGITID 62
Query: 65 TAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLAR 124
++ + VD PGHAD I+ +++ A +D A++V A +GP QT EH+L+
Sbjct: 63 IGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILD 122
Query: 125 QVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGND-IPIIKGSAKLALEGDT 183
+P IVV + K+D + + + IPI SAK D
Sbjct: 123 HFNIPIIVV-ITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI---SAKTGFGVD- 177
Query: 184 GPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGE 243
L I +L+ A R + F +P++ F I G GTVVTG + +GIV+VG+
Sbjct: 178 -ELKNLIITTLNNA------EIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGD 230
Query: 244 ELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVL 295
EL+++ I + T ++ F++ + + +AGD +G+ ++G + + RG +L
Sbjct: 231 ELKVLPI--NMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXIL 280
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 121/436 (27%), Positives = 194/436 (44%), Gaps = 60/436 (13%)
Query: 10 KPHINVGTIGHVDHGKTT-------LTAAIATVLSKKFGGEAKSYDQ--------IDAAP 54
K H+NV IGHVD GK+T LT + +K+ EAK ++ +D
Sbjct: 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQ 74
Query: 55 EEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP 114
EE+ +G T+ +ET+ +H+ +D PGH ++ NMI GA+Q D A+LV SA G
Sbjct: 75 EERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFE 134
Query: 115 -------QTREHILLARQVGVPYIVVFLNKAD---MXXXXXXXXXXXXXXXXXXNKYEF- 163
QTREH +LA+ GV +++V +NK D + K F
Sbjct: 135 TGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFN 194
Query: 164 PGNDIPIIKGS----AKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVED 219
P DI + S A L + D P L LD +P NR++DG LP+ D
Sbjct: 195 PKKDIHFMPCSGLTGANLKEQSDFCPW--YIGLPFIPYLDN-LPNFNRSVDGPIRLPIVD 251
Query: 220 VFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGL 279
+ GTVV G++E G + G++L ++ K V+ G+ D G+N+ +
Sbjct: 252 KY--KDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEV--LGILSDDTETDFVAPGENLKI 307
Query: 280 LLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTT- 338
L+G + E++ G +L P ++ H T ++ + + P Y + T
Sbjct: 308 RLKGIEEEEILPGFILCDPSNL-CHSGRTFDVQIVIIEHKSIICP---GYNAVLHIHTCI 363
Query: 339 ---DVTGSIEL--------PKNKEMVMPGDNVLIT-VRLINPIAME------EGLRFAIR 380
++T I L K + + D V I +R I +E + RF +R
Sbjct: 364 EEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLR 423
Query: 381 EGGRTVGAGVVVKIIE 396
+ G+T+ G V+K+++
Sbjct: 424 DEGKTIAIGKVLKLVQ 439
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 124/256 (48%), Gaps = 26/256 (10%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVL-SKKFGGEAKSYDQIDAA--PEEKARGIT 62
+ + +P +N+G +GHVDHGKTTL AI + SKK G + ++ PE +
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPS 61
Query: 63 INTAHIEYETK-ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-PMPQTREHI 120
+ + E K R + +D PGH + M++GAA MDGAILV +A + P PQTREH
Sbjct: 62 CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHF 121
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
+ +GV +++ NK D+ + ++PII SA
Sbjct: 122 VALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW---AENVPIIPVSA----- 173
Query: 181 GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGT--------VVTG 232
L + +I SL + ++ YI TP R + ++ V F ++ GT V+ G
Sbjct: 174 -----LHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGG 228
Query: 233 RVERGIVRVGEELEII 248
+ +G+ +V +E++++
Sbjct: 229 SIIQGLFKVDQEIKVL 244
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 114/437 (26%), Positives = 182/437 (41%), Gaps = 68/437 (15%)
Query: 6 FERT--KPHINVGTIGHVDHGKTTLTAAIATVLS-------KKFGGEAK-------SYDQ 49
FE++ KP +++ GHVD GK+T+ I L +K EA SY
Sbjct: 169 FEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAW 228
Query: 50 I-DAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSA 108
+ D EE+ARG+T++ A +E+ + Y D PGH D+I MI GA+ D A+LV +
Sbjct: 229 LLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDS 288
Query: 109 ADGPMP-------QTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXX--XXN 159
+ QTREH L R +G+ IVV +NK D+
Sbjct: 289 SQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIK 348
Query: 160 KYEFPGND---IPIIKGSAKLALEGDTGPLGEQ----SILSLSKALDTYIPTPNRAIDGA 212
F ++ +PI S ++ D+ L + ++LS ALD +P P +
Sbjct: 349 MVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLS---ALDQLVP-PEKPYRKP 404
Query: 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEEL------EIIGIKDTVKTTCTGVEMFRK 266
L ++DV+ S R VTGRVE G V+V + L E +K+ ++ +
Sbjct: 405 LRLSIDDVYR-SPRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTW--- 460
Query: 267 LLDQGQAGDNIGLLLRGTKREDVERGQVLAK-PGSIKPHKHFTGEIYALSKDEGGRHTPF 325
AGD + L L + + G +L+ ++ + F EI H P
Sbjct: 461 ----AVAGDTVTLQLADIEVNQLRPGDILSNYENPVRRVRSFVAEIQTFDI-----HGPI 511
Query: 326 FSNYRPQFYFRTTDVTGSIEL----PKNKEMVMPGDNVLITVRLIN---PIAMEEGL--- 375
S + T + S+++ K + L+ + ++ P+ + E
Sbjct: 512 LSGSTLVLHLGRTVTSVSLKIVTVNNKRSRHIASRKRALVRISFLDGLFPLCLAEECPAL 571
Query: 376 -RFAIREGGRTVGAGVV 391
RF +R G TV AG+V
Sbjct: 572 GRFILRRSGDTVAAGIV 588
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 113/443 (25%), Positives = 187/443 (42%), Gaps = 72/443 (16%)
Query: 10 KPHINVGTIGHVDHGKTTL-------TAAIATVLSKKFGGEAKSYDQ--------IDAAP 54
K H+N+ IGHVD GK+TL T + +K EAK + +D+
Sbjct: 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 100
Query: 55 EEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP 114
EE+ +G T+ +ET+ R ++ +D PGH Y+ NMI GA+Q D +LV SA G
Sbjct: 101 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 160
Query: 115 -------QTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEF---- 163
QTREH +LAR G+ ++VV +NK D +K
Sbjct: 161 AGFERGGQTREHAVLARTQGINHLVVVINKMD----EPSVQWSEERYKECVDKLSMFLRR 216
Query: 164 -----PGNDIPIIKGSA------KLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGA 212
D+ + SA K ++ P + SL + LD+ + R ++
Sbjct: 217 VAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGP--SLLEYLDS-MTHLERKVNAP 273
Query: 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQ 272
F++P+ + GT++ G++E G ++ + ++ I T++ T E + +
Sbjct: 274 FIMPIASKY--KDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEE-ISSSI 330
Query: 273 AGDNIGLLLRGTKREDVERGQVLAKPGS-IKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 331
GD + L +RG DV+ G VL + + F +I L + + Y
Sbjct: 331 CGDQVRLRVRGDD-SDVQTGYVLTSTKNPVHATTRFIAQIAILELP-----SILTTGYSC 384
Query: 332 QFYFRTT--DVTGSIELPK----NKEMVMP------GDNVLITVRLINPIAMEEGL---- 375
+ T +V+ + L K N++ P G ++ + P+ ME
Sbjct: 385 VMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQY 444
Query: 376 --RFAIREGGRTVGAGVVVKIIE 396
RF +R+ G TV G VVKI++
Sbjct: 445 MGRFTLRDQGTTVAVGKVVKILD 467
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 146/341 (42%), Gaps = 73/341 (21%)
Query: 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHI 68
++ +N+G +GHVDHGKT+LT A+ V + D EE RGI+I +
Sbjct: 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWT-------------DRHSEELRRGISIRLGYA 51
Query: 69 EYETKA-----------------------RHYAHVDCPGHADYIKNMITGAAQMDGAILV 105
+ E + R + VD PGH + M++GA+ MDGAILV
Sbjct: 52 DCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILV 111
Query: 106 CSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFP 164
+A + P PQT+EH++ +G+ I++ NK D+
Sbjct: 112 IAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTI--- 168
Query: 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSIS 224
+ PII SA E +I L KA+ +IPTP R D + V F I+
Sbjct: 169 AENAPIIPISAH----------HEANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDIN 218
Query: 225 GRGT--------VVTGRVERGIVRVGEELEI-IGIKDTVKTTCTGVEMFRKLLDQGQAGD 275
GT V+ G + +G+ +VG+E+EI GIK T + K++ AG+
Sbjct: 219 KPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLA-AGN 277
Query: 276 NI-------GLLLRGT------KREDVERGQVLAKPGSIKP 303
I GL+ GT + D G V+ PG++ P
Sbjct: 278 TILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPP 318
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 123/267 (46%), Gaps = 37/267 (13%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT 65
+ + +P +N+G +GHVDHGKTTL AI + + K E K I E G+ +
Sbjct: 3 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESC 62
Query: 66 AHIE-YETKA--------------RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD 110
E Y T+ R + +D PGH + M++GAA MDGAILV +A +
Sbjct: 63 KKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 122
Query: 111 G-PMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIP 169
P PQTREH + +GV +++ NK D+ + ++P
Sbjct: 123 PFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW---AENVP 179
Query: 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGT- 228
II SA L + +I SL + ++ YI TP R + ++ V F ++ GT
Sbjct: 180 IIPVSA----------LHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQ 229
Query: 229 -------VVTGRVERGIVRVGEELEII 248
V+ G + +G+ +V +E++++
Sbjct: 230 FNELKGGVIGGSIIQGLFKVDQEIKVL 256
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 123/267 (46%), Gaps = 37/267 (13%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT 65
+ + +P +N+G +GHVDHGKTTL AI + + K E K I E G+ +
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESC 61
Query: 66 AHIE-YETKA--------------RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD 110
E Y T+ R + +D PGH + M++GAA MDGAILV +A +
Sbjct: 62 KKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 121
Query: 111 G-PMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIP 169
P PQTREH + +GV +++ NK D+ + ++P
Sbjct: 122 PFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW---AENVP 178
Query: 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGT- 228
II SA L + +I SL + ++ YI TP R + ++ V F ++ GT
Sbjct: 179 IIPVSA----------LHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQ 228
Query: 229 -------VVTGRVERGIVRVGEELEII 248
V+ G + +G+ +V +E++++
Sbjct: 229 FNELKGGVIGGSIIQGLFKVDQEIKVL 255
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 32/262 (12%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKS--YDQIDAA-------PEE 56
+ + +P +N+G +GHVDHGKTTL AI + + K E Y + + PE
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCESCKKPEA 61
Query: 57 KARGITINTAHIEYETK-ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-PMP 114
+ + + E K R + +D PGH + M++GAA MDGAILV +A + P P
Sbjct: 62 YVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP 121
Query: 115 QTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGS 174
QTREH + +GV +++ NK D+ + ++PII S
Sbjct: 122 QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW---AENVPIIPVS 178
Query: 175 AKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGT------ 228
A L + +I SL + ++ YI TP R + ++ V F ++ GT
Sbjct: 179 A----------LHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELK 228
Query: 229 --VVTGRVERGIVRVGEELEII 248
V+ G + +G+ +V +E++++
Sbjct: 229 GGVIGGSIIQGLFKVDQEIKVL 250
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 145/340 (42%), Gaps = 77/340 (22%)
Query: 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
+N+G +GHVDHGKTTLT A+ V + D EE RGITI + E
Sbjct: 11 EVNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIKIGFADAE 57
Query: 72 TK-----------------------ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSA 108
+ R + +D PGH + M+ GA+ MDGAILV +A
Sbjct: 58 IRRCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAA 117
Query: 109 AD-GPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGND 167
+ P PQTREH++ + +G I++ NK ++ +
Sbjct: 118 NEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIKGTV---AEN 174
Query: 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRG 227
PII SA L +I L KA++ +IPTP R + + V F ++ G
Sbjct: 175 APIIPISA----------LHGANIDVLVKAIEEFIPTPKRDSNKPPKMLVLRSFDVNKPG 224
Query: 228 T--------VVTGRVERGIVRVGEELEI-IGIK---------DTVKTTCTGVEMFRKLLD 269
T V+ G + +G ++VG+E+EI G+ + + T ++ + ++
Sbjct: 225 TPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVE 284
Query: 270 QGQAGDNIGLLLRGTKRE------DVERGQVLAKPGSIKP 303
+ G +G+ GTK + D+ G V+ KPG + P
Sbjct: 285 EAYPGGLVGI---GTKLDPYLTKGDLMAGNVVGKPGKLPP 321
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 148/347 (42%), Gaps = 77/347 (22%)
Query: 5 KFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN 64
K + + +N+G +GHVDHGKTTLT A+ V + D EE RGITI
Sbjct: 3 KRKSRQAEVNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIK 49
Query: 65 TAHIEYETK-----------------------ARHYAHVDCPGHADYIKNMITGAAQMDG 101
+ E + R + +D PGH + M+ GA+ MDG
Sbjct: 50 IGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDG 109
Query: 102 AILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNK 160
AILV +A + P PQTREH++ + +G I++ NK ++
Sbjct: 110 AILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGT 169
Query: 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDV 220
+ PII SA L +I L KA++ +IPTP R + + V
Sbjct: 170 V---AENAPIIPISA----------LHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRS 216
Query: 221 FSISGRGT--------VVTGRVERGIVRVGEELEI-IGIK---------DTVKTTCTGVE 262
F ++ GT V+ G + +G ++VG+E+EI G+ + + T ++
Sbjct: 217 FDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQ 276
Query: 263 MFRKLLDQGQAGDNIGLLLRGTKRE------DVERGQVLAKPGSIKP 303
+ +++ G +G+ GTK + D+ G V+ KPG + P
Sbjct: 277 AGGQFVEEAYPGGLVGV---GTKLDPYLTKGDLMAGNVVGKPGKLPP 320
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 148/347 (42%), Gaps = 77/347 (22%)
Query: 5 KFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN 64
K + + +N+G +GHVDHGKTTLT A+ V + D EE RGITI
Sbjct: 3 KRKSRQAEVNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIK 49
Query: 65 TAHIEYETK-----------------------ARHYAHVDCPGHADYIKNMITGAAQMDG 101
+ E + R + +D PGH + M+ GA+ MDG
Sbjct: 50 IGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDG 109
Query: 102 AILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNK 160
AILV +A + P PQTREH++ + +G I++ NK ++
Sbjct: 110 AILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGT 169
Query: 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDV 220
+ PII SA L +I L KA++ +IPTP R + + V
Sbjct: 170 V---AENAPIIPISA----------LHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRS 216
Query: 221 FSISGRGT--------VVTGRVERGIVRVGEELEI-IGIK---------DTVKTTCTGVE 262
F ++ GT V+ G + +G ++VG+E+EI G+ + + T ++
Sbjct: 217 FDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQ 276
Query: 263 MFRKLLDQGQAGDNIGLLLRGTK------REDVERGQVLAKPGSIKP 303
+ +++ G +G+ GTK + D+ G V+ KPG + P
Sbjct: 277 AGGQFVEEAYPGGLVGV---GTKLDPYLTKGDLMAGNVVGKPGKLPP 320
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 143/347 (41%), Gaps = 77/347 (22%)
Query: 5 KFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN 64
K + + +N+G +GHVDHGKTTLT A+ V + D EE RGITI
Sbjct: 3 KRKSRQAEVNIGXVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIK 49
Query: 65 TAHIEYETK-----------------------ARHYAHVDCPGHADYIKNMITGAAQMDG 101
+ E + R + +D PGH + GA+ DG
Sbjct: 50 IGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDG 109
Query: 102 AILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNK 160
AILV +A + P PQTREH+ + +G I++ NK ++
Sbjct: 110 AILVIAANEPCPRPQTREHLXALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGT 169
Query: 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDV 220
+ PII SA L +I L KA++ +IPTP R + V
Sbjct: 170 V---AENAPIIPISA----------LHGANIDVLVKAIEDFIPTPKRDPNKPPKXLVLRS 216
Query: 221 FSISGRGT--------VVTGRVERGIVRVGEELEI-IGIK---------DTVKTTCTGVE 262
F ++ GT V+ G + +G ++VG+E+EI G+ + + T ++
Sbjct: 217 FDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQ 276
Query: 263 MFRKLLDQGQAGDNIGLLLRGTK------REDVERGQVLAKPGSIKP 303
+ +++ G +G+ GTK + D+ G V+ KPG + P
Sbjct: 277 AGGQFVEEAYPGGLVGV---GTKLDPYLTKGDLXAGNVVGKPGKLPP 320
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 139/332 (41%), Gaps = 50/332 (15%)
Query: 11 PHINVGTIGHVDHGKTTLTAAIATVLS-------KKFGGEAKSYDQ--------IDAAPE 55
PH++ +GHVD GK+TL + L+ +K E+++ + +D E
Sbjct: 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNE 91
Query: 56 EKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP- 114
E+ RG+T++ + T ++ VD PGH D++ N I G +Q D AIL +
Sbjct: 92 ERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFES 151
Query: 115 ------QTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXX----XXXXNKYEFP 164
QT+EH+LLA +G+ +++ +NK D +E
Sbjct: 152 GFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDN 211
Query: 165 GNDIPII----KGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAI--DGAF 213
N +PI +G K+ + GP +++S + I N I D F
Sbjct: 212 INWVPISGFSGEGVYKIEYTDEVRQWYNGP----NLMSTLENAAFKISKENEGINKDDPF 267
Query: 214 LLPVEDVF---SISGRGTVVTGRVERGIVRVGEELEII-----GIKDTVKT-TCTGVEMF 264
L V ++ S +V+G++E G ++ GE L I I D ++ + G
Sbjct: 268 LFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTN 327
Query: 265 RKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296
+ D GD + L LR ED++ G + A
Sbjct: 328 HEETDVAIKGDFVTLKLRKAYPEDIQNGDLAA 359
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 139/332 (41%), Gaps = 50/332 (15%)
Query: 11 PHINVGTIGHVDHGKTTLTAAIATVLS-------KKFGGEAKSYDQ--------IDAAPE 55
PH++ +GHVD GK+TL + L+ +K E+++ + +D E
Sbjct: 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNE 225
Query: 56 EKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP- 114
E+ RG+T++ + T ++ VD PGH D++ N I G +Q D AIL +
Sbjct: 226 ERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFES 285
Query: 115 ------QTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXX----XXXXNKYEFP 164
QT+EH+LLA +G+ +++ +NK D +E
Sbjct: 286 GFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDN 345
Query: 165 GNDIPII----KGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAI--DGAF 213
N +PI +G K+ + GP +++S + I N I D F
Sbjct: 346 INWVPISGFSGEGVYKIEYTDEVRQWYNGP----NLMSTLENAAFKISKENEGINKDDPF 401
Query: 214 LLPVEDVF---SISGRGTVVTGRVERGIVRVGEELEII-----GIKDTVKT-TCTGVEMF 264
L V ++ S +V+G++E G ++ GE L I I D ++ + G
Sbjct: 402 LFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTN 461
Query: 265 RKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296
+ D GD + L LR ED++ G + A
Sbjct: 462 HEETDVAIKGDFVTLKLRKAYPEDIQNGDLAA 493
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
Query: 13 INVGTIGHVDHGKTTLTAAIA--TVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY 70
IN+G + HVD GKTTLT ++ + + G K + D E+ RGITI T +
Sbjct: 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 62
Query: 71 ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPY 130
+ + +D PGH D++ + + +DGAIL+ SA DG QTR R++G+P
Sbjct: 63 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPT 122
Query: 131 IVVFLNKAD 139
I F+NK D
Sbjct: 123 I-FFINKID 130
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 130/328 (39%), Gaps = 42/328 (12%)
Query: 11 PHINVGTIGHVDHGKTTLTAAIATVL--------------SKKFGGEAKSYDQI-DAAPE 55
PH++ +GHVD GK+TL + L S+ G + + I D E
Sbjct: 32 PHLSFVVLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNE 91
Query: 56 EKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP- 114
E+ RG+T++ + T ++ VD PGH D++ N I G +Q D AIL +
Sbjct: 92 ERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTNAFES 151
Query: 115 ------QTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXX----XXXXNKYEFP 164
QT+EH LLA +G+ +++ NK D +E
Sbjct: 152 GFDLDGQTKEHXLLASSLGIHNLIIAXNKXDNVDWSQQRFEEIKSKLLPYLVDIGFFEDN 211
Query: 165 GNDIPI--IKGSAKLALEGDTGPLGEQSILSLSKALDT---YIPTPNRAI--DGAFLLPV 217
N +PI G +E + +L L+ I N I D FL V
Sbjct: 212 INWVPISGFSGEGVYKIEYTDEVRQWYNGPNLXSTLENAAFKISKENEGINKDDPFLFSV 271
Query: 218 EDVF---SISGRGTVVTGRVERGIVRVGEELEII-----GIKDTVKT-TCTGVEMFRKLL 268
++ S +V+G++E G ++ GE L I I D ++ + G +
Sbjct: 272 LEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEET 331
Query: 269 DQGQAGDNIGLLLRGTKREDVERGQVLA 296
D GD + L LR ED++ G + A
Sbjct: 332 DVAIKGDFVTLKLRKAYPEDIQNGDLAA 359
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 17 TIGHVDHGKTTLTAAIA--------------TVLSKKFGGEAKSYDQ---IDAAPEEKAR 59
T G+VD GK+TL + T SKK G D +D E+ +
Sbjct: 29 TCGNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQ 88
Query: 60 GITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREH 119
GITI+ A+ + T R + D PGH Y +N TGA+ D AI++ A G QTR H
Sbjct: 89 GITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRRH 148
Query: 120 ILLARQVGVPYIVVFLNKADM 140
+A +G+ +IVV +NK D+
Sbjct: 149 SYIASLLGIKHIVVAINKXDL 169
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/37 (81%), Positives = 34/37 (91%)
Query: 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAK 45
TKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+
Sbjct: 1 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAAR 37
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 13/148 (8%)
Query: 4 SKFERTKP---HINVGTIGHVDHGKTTLTAAIA--TVLSKKFGGEAKSYDQIDAAPEEKA 58
S RT P + N+G HVD GKTT T + T ++ K G D +E+
Sbjct: 2 SHMARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQE 61
Query: 59 RGITINTAHIEYETKARHYAH-------VDCPGHADYIKNMITGAAQMDGAILVCSAADG 111
RGITI +A + K + +D PGH D+ + +DGA++V G
Sbjct: 62 RGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSG 121
Query: 112 PMPQTREHILLARQVGVPYIVVFLNKAD 139
PQ+ A + GVP I V++NK D
Sbjct: 122 VEPQSETVWRQANKYGVPRI-VYVNKMD 148
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITI 63
E+T+ N+G I H+D GKTT T I + K G + Q+D +E+ RGITI
Sbjct: 7 LEKTR---NIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITI 63
Query: 64 NTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLA 123
+A + +D PGH D+ + +DGA+ V A G PQT A
Sbjct: 64 TSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQA 123
Query: 124 RQVGVPYIVVFLNKAD 139
GVP I VF+NK D
Sbjct: 124 TTYGVPRI-VFVNKMD 138
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITI 63
E+T+ N+G + H+D GKTT T I + K G + Q+D +E+ RGITI
Sbjct: 7 LEKTR---NIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITI 63
Query: 64 NTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLA 123
+A + +D PGH D+ + +DGA+ V A G PQT A
Sbjct: 64 TSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQA 123
Query: 124 RQVGVPYIVVFLNKAD 139
GVP I VF+NK D
Sbjct: 124 TTYGVPRI-VFVNKMD 138
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 67/144 (46%), Gaps = 13/144 (9%)
Query: 8 RTKP---HINVGTIGHVDHGKTTLTAAIA--TVLSKKFGGEAKSYDQIDAAPEEKARGIT 62
RT P + N+G H+D GKTT T I T ++ K G +D +E+ RGIT
Sbjct: 3 RTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGIT 62
Query: 63 INTAHIE--YETKARHYAH-----VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQ 115
I +A + A+ Y +D PGH D+ + +DGA++V A G PQ
Sbjct: 63 ITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQ 122
Query: 116 TREHILLARQVGVPYIVVFLNKAD 139
+ A + VP I F+NK D
Sbjct: 123 SETVWRQANKYKVPRI-AFVNKMD 145
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 67/144 (46%), Gaps = 13/144 (9%)
Query: 8 RTKP---HINVGTIGHVDHGKTTLTAAIA--TVLSKKFGGEAKSYDQIDAAPEEKARGIT 62
RT P + N+G H+D GKTT T I T ++ K G +D +E+ RGIT
Sbjct: 2 RTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGIT 61
Query: 63 INTAHIE--YETKARHYAH-----VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQ 115
I +A + A+ Y +D PGH D+ + +DGA++V A G PQ
Sbjct: 62 ITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQ 121
Query: 116 TREHILLARQVGVPYIVVFLNKAD 139
+ A + VP I F+NK D
Sbjct: 122 SETVWRQANKYKVPRI-AFVNKMD 144
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+G H+D GKTT T I + K G + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 74 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKAD 139
F NK D
Sbjct: 134 -AFANKMD 140
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITI 63
E+T+ N+G I H+D GKTT T I + K G + Q+D +E+ RGITI
Sbjct: 7 LEKTR---NIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITI 63
Query: 64 NTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLA 123
+A + +D PGH D + +DGA+ V A G PQT A
Sbjct: 64 TSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQA 123
Query: 124 RQVGVPYIVVFLNKAD 139
GVP I VF+NK D
Sbjct: 124 TTYGVPRI-VFVNKMD 138
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA 74
V +GHVDHGKTTL AI + E++A GIT + +
Sbjct: 11 VTIMGHVDHGKTTLLDAI----------------RHSKVTEQEAGGITQHIGAYQVTVND 54
Query: 75 RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVF 134
+ +D PGH + GA D ILV +A DG MPQT E I A+ VP I+V
Sbjct: 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVA 113
Query: 135 LNKAD 139
+NK D
Sbjct: 114 INKMD 118
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 130/332 (39%), Gaps = 52/332 (15%)
Query: 14 NVGTIGHVDHGKTTLTAAIATV---LSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY 70
N I H+DHGK+TL+ I + LS + EA+ D +D E+ RGITI +
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDR-EMEAQVLDSMDL---ERERGITIKAQSVTL 61
Query: 71 ETKAR-----HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ 125
+ KA +D PGH D+ + A +GA+LV A G QT + A +
Sbjct: 62 DYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME 121
Query: 126 VGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGP 185
+ + +V LNK D+ DI I + + TG
Sbjct: 122 MDLE-VVPVLNKIDLPAADPERVAEEI-------------EDIVGIDATDAVRCSAKTG- 166
Query: 186 LGEQSILS-LSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEE 244
+G Q +L L + + P + + D + + G V R++ G +R G
Sbjct: 167 VGVQDVLERLVRDIPPPEGDPEGPLQALII----DSWFDNYLGVVSLIRIKNGTLRKG-- 220
Query: 245 LEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLL-RGTKREDVERGQVLAKPGSIKP 303
D VK TG Q D +G+ + R +++ G+V +IK
Sbjct: 221 -------DKVKVMSTG---------QTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKD 264
Query: 304 -HKHFTGEIYALSKDEGGRHTPFFSNYRPQFY 334
H G+ L+++ + P F +PQ Y
Sbjct: 265 IHGAPVGDTLTLARNPAEKALPGFKKVKPQVY 296
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+G H+D GKTT T I + K G + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 74 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKAD 139
F NK D
Sbjct: 134 -AFANKMD 140
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+G H+D GKTT T I + K G + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKAD 139
F NK D
Sbjct: 134 -AFANKMD 140
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 130/332 (39%), Gaps = 52/332 (15%)
Query: 14 NVGTIGHVDHGKTTLTAAIATV---LSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY 70
N I H+DHGK+TL+ I + LS + EA+ D +D E+ RGITI +
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDR-EMEAQVLDSMDL---ERERGITIKAQSVTL 61
Query: 71 ETKAR-----HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ 125
+ KA +D PGH D+ + A +GA+LV A G QT + A +
Sbjct: 62 DYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME 121
Query: 126 VGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGP 185
+ + +V LNK D+ DI I + + TG
Sbjct: 122 MDLE-VVPVLNKIDLPAADPERVAEEI-------------EDIVGIDATDAVRCSAKTG- 166
Query: 186 LGEQSILS-LSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEE 244
+G Q +L L + + P + + D + + G V R++ G +R G
Sbjct: 167 VGVQDVLERLVRDIPPPEGDPEGPLQALII----DSWFDNYLGVVSLIRIKNGTLRKG-- 220
Query: 245 LEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLL-RGTKREDVERGQVLAKPGSIKP 303
D VK TG Q D +G+ + R +++ G+V +IK
Sbjct: 221 -------DKVKVMSTG---------QTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKD 264
Query: 304 -HKHFTGEIYALSKDEGGRHTPFFSNYRPQFY 334
H G+ L+++ + P F +PQ Y
Sbjct: 265 IHGAPVGDTLTLARNPAEKALPGFKKVKPQVY 296
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+G H+D GKTT T I + K G + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKAD 139
F NK D
Sbjct: 134 -AFANKMD 140
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+G H+D GKTT T I + K G + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKAD 139
F NK D
Sbjct: 134 -AFANKMD 140
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+G H+D GKTT T I + K G + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKAD 139
F NK D
Sbjct: 134 -AFANKMD 140
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITI 63
E+T+ N+G + H+D GKTT T I + K G + Q+D +E+ RGITI
Sbjct: 7 LEKTR---NIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITI 63
Query: 64 NTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLA 123
+A + +D PGH D + +DGA+ V A G PQT A
Sbjct: 64 TSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQA 123
Query: 124 RQVGVPYIVVFLNKAD 139
GVP I VF+NK D
Sbjct: 124 TTYGVPRI-VFVNKMD 138
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+G H+D GKTT T I + K + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 74 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKAD 139
F NK D
Sbjct: 134 -AFANKMD 140
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 18 IGHVDHGKTTLTAAI----------ATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAH 67
I H D GKTTLT + +V ++K A S D E+ RGI++ T+
Sbjct: 37 ISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATS----DWMAMERERGISVTTSV 92
Query: 68 IEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVG 127
+++ + R +D PGH D+ ++ +D A++V AA G QTR+ + + R
Sbjct: 93 MQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRA 152
Query: 128 VPYIVVFLNKAD 139
P ++ F+NK D
Sbjct: 153 TP-VMTFVNKMD 163
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 18 IGHVDHGKTTLTAAI----------ATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAH 67
I H D GKTTLT + T+ S+K A S D EK RGI++ T+
Sbjct: 19 ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATS----DWXELEKQRGISVTTSV 74
Query: 68 IEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVG 127
++ K +D PGHAD+ ++ +D A+ V AA G P+T + + R
Sbjct: 75 XQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXEVCRLRH 134
Query: 128 VPYIVVFLNKAD 139
P I F+NK D
Sbjct: 135 TP-IXTFINKXD 145
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 96/229 (41%), Gaps = 28/229 (12%)
Query: 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT-AHIEYETK 73
V +GHVDHGKTTL + Q+ A +A GIT + A +
Sbjct: 7 VTIMGHVDHGKTTLLDKLRKT-------------QVAAM---EAGGITQHIGAFLVSLPS 50
Query: 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVV 133
+D PGHA + G D ILV +A DG M QT E I A+ VP IV+
Sbjct: 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVL 109
Query: 134 FLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILS 193
+NK D E G D+ + S AL G+ ++ ++
Sbjct: 110 AINKCDKAEADPEKVKKELLAYDVV--CEDYGGDVQAVHVS---ALTGENMMALAEATIA 164
Query: 194 LSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVG 242
L++ L+ P A++G + + F+ GRG V T ++RG +R G
Sbjct: 165 LAEMLELK-ADPTGAVEGTVI----ESFTDKGRGPVTTAIIQRGTLRKG 208
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+ H+D GKTT T I + K G + +D +E+ RGITI A
Sbjct: 14 NIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKAD 139
F NK D
Sbjct: 134 -AFANKMD 140
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA 74
V +GHVDHGKT+L I + +K GEA GIT + ET+
Sbjct: 7 VTIMGHVDHGKTSLLEYIRS--TKVASGEAG--------------GITQHIGAYHVETEN 50
Query: 75 RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
+D PGHA + GA D +LV +A DG MPQT E I
Sbjct: 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI 96
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 18 IGHVDHGKTTLT-------AAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY 70
I H D GKTT+T AI T + K G + + + D EK RGI+I T+ +++
Sbjct: 19 ISHPDAGKTTITEKVLLFGQAIQTAGTVK-GRGSNQHAKSDWMEMEKQRGISITTSVMQF 77
Query: 71 ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPY 130
+D PGH D+ ++ +D ++V AA G +TR+ + + R P
Sbjct: 78 PYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP- 136
Query: 131 IVVFLNKAD 139
I+ F+NK D
Sbjct: 137 ILTFMNKLD 145
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 18 IGHVDHGKTTLT-------AAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY 70
I H D GKTT+T AI T + K G + + + D EK RGI+I T+ +++
Sbjct: 19 ISHPDAGKTTITEKVLLFGQAIQTAGTVK-GRGSNQHAKSDWMEMEKQRGISITTSVMQF 77
Query: 71 ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPY 130
+D PGH D+ ++ +D ++V AA G +TR+ + + R P
Sbjct: 78 PYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP- 136
Query: 131 IVVFLNKAD 139
I+ F+NK D
Sbjct: 137 ILTFMNKLD 145
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 27/147 (18%)
Query: 14 NVGTIGHVDHGKTTLTAAI---ATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY 70
N+ I HVDHGK+TLT ++ A ++S GEA+ D +E+ RGITI + I
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARF---TDTRKDEQERGITIKSTAISL 77
Query: 71 ----------ETKARHYAH------VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP 114
E K + + +D PGH D+ + DGA++V +G
Sbjct: 78 YSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCV 137
Query: 115 QTREHILLARQVGVPYI--VVFLNKAD 139
QT E +L RQ I VV +NK D
Sbjct: 138 QT-ETVL--RQALGERIKPVVVINKVD 161
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 27/147 (18%)
Query: 14 NVGTIGHVDHGKTTLTAAI---ATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY 70
N+ I HVDHGK+TLT ++ A ++S GEA+ D +E+ RGITI + I
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARF---TDTRKDEQERGITIKSTAISL 77
Query: 71 ----------ETKARHYAH------VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP 114
E K + + +D PGH D+ + DGA++V +G
Sbjct: 78 YSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCV 137
Query: 115 QTREHILLARQVGVPYI--VVFLNKAD 139
QT E +L RQ I VV +NK D
Sbjct: 138 QT-ETVL--RQALGERIKPVVVINKVD 161
>pdb|3DWU|A Chain A, Transition-State Model Conformation Of The Switch I
Region Fitted Into The Cryo-Em Map Of The
Eef2.80s.Alf4.Gdp Complex
Length = 46
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 21 VDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARGITINT 65
VDHGKTTLTAA+ V + + E K Y ID APEE+ARGITINT
Sbjct: 1 VDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINT 46
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 45/278 (16%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK 73
N I HVDHGK+TL + + K +D E+ RGIT+ + K
Sbjct: 8 NFCIIAHVDHGKSTLADRLLE-YTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYK 66
Query: 74 AR----HYAH-VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGV 128
A+ + H +D PGH D+ + A +GA+L+ A+ G QT + A + +
Sbjct: 67 AKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDL 126
Query: 129 PYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGE 188
I V NK + P D+ +K + L D E
Sbjct: 127 VIIPVI------------------------NKIDLPSADVDRVKKQIEEVLGLDP----E 158
Query: 189 QSILSLSK----------ALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGI 238
++IL+ +K A+ IP P + D + RG V R+ G
Sbjct: 159 EAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGE 218
Query: 239 VRVGEELEIIGIKDTVKTTCTGVEMFRKL-LDQGQAGD 275
V+ G+++ ++ + T G + + D+ AGD
Sbjct: 219 VKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGD 256
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 7/132 (5%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK 73
N I HVDHGK+TL + + K +D E+ RGIT+ + K
Sbjct: 8 NFCIIAHVDHGKSTLADRLLE-YTGAISEREKREQLLDTLDVERERGITVKXQAVRXFYK 66
Query: 74 AR----HYAH-VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGV 128
A+ + H +D PGH D+ + A +GA+L+ A+ G QT + A + +
Sbjct: 67 AKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDL 126
Query: 129 PYIVVFLNKADM 140
I+ +NK D+
Sbjct: 127 -VIIPVINKIDL 137
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 15 VGTIGHVDHGKTTLTAAI--ATVLSKKFGGEAKSYDQIDAAPEEKARGIT---INTAHIE 69
V +GHVDHGKTTL I + V S++ GG + + P + GI + I
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEI-PXDVIEGICGDFLKKFSIR 66
Query: 70 YETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVP 129
+ +D PGH + G A D AIL+ +G PQT+E + + R P
Sbjct: 67 ETLPGLFF--IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRTP 124
Query: 130 YIVVFLNKAD 139
++V NK D
Sbjct: 125 FVVA-ANKID 133
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 15 VGTIGHVDHGKTTLTAAI--ATVLSKKFGGEAKSYDQIDAAPEEKARGIT---INTAHIE 69
V +GHVDHGKTTL I + V S++ GG + + P + GI + I
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEI-PMDVIEGICGDFLKKFSIR 66
Query: 70 YETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVP 129
+ +D PGH + G A D AIL+ +G PQT+E + + R P
Sbjct: 67 ETLPGLFF--IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP 124
Query: 130 YIVVFLNKAD 139
++V NK D
Sbjct: 125 FVVA-ANKID 133
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 14 NVGTIGHVDHGKTTLTAAI--ATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
V +GH GKTTLT A+ T ++ G + D PE K T+ T
Sbjct: 11 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL 70
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
+ +D PG+ D++ + D A++ SA G T +A ++G+P +
Sbjct: 71 FRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM 130
Query: 132 VV 133
VV
Sbjct: 131 VV 132
>pdb|2P8W|S Chain S, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|2P8X|S Chain S, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Z|S Chain S, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
Length = 35
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 43 EAKSYDQIDAAPEEKARGITINTAHIE 69
E K Y ID APEE+ARGITINTAH+E
Sbjct: 9 EVKDYGDIDKAPEERARGITINTAHVE 35
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 47/126 (37%), Gaps = 27/126 (21%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK 73
N+G H+D GKTT T I + I + T K
Sbjct: 9 NIGIAAHIDAGKTTTTERILYYTGR----------------------IAVTTCF----WK 42
Query: 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVV 133
+D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 43 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-A 101
Query: 134 FLNKAD 139
F NK D
Sbjct: 102 FANKMD 107
>pdb|2ELF|A Chain A, Crystal Structure Of The Selb-Like Elongation Factor
Ef-Pyl From Methanosarcina Mazei
Length = 370
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 217 VEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDN 276
++ F+++G+G VV G V++GI + ++ +I + ++ ++ +D AG
Sbjct: 197 IDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEI--RSIQSHDVDIDSAPAGTR 254
Query: 277 IGLLLRGTKREDVERGQVLA 296
+G L+ + +D+ERG +++
Sbjct: 255 VGXRLKNVQAKDIERGFIIS 274
>pdb|3E1Y|E Chain E, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|F Chain F, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|G Chain G, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|H Chain H, Crystal Structure Of Human Erf1ERF3 COMPLEX
Length = 204
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 215 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAG 274
LP+ D + GTVV G++E G + G++L ++ K V+ G+ D G
Sbjct: 9 LPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVL--GILSDDVETDTVAPG 64
Query: 275 DNIGLLLRGTKREDVERGQVLAKPGSI-KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQF 333
+N+ + L+G + E++ G +L P ++ + F +I + + Y
Sbjct: 65 ENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIE-----HKSIICPGYNAVL 119
Query: 334 YFRTT----DVTGSI--------ELPKNKEMVMPGDNVLIT-VRLINPIAME------EG 374
+ T ++T I E K + + D V I +R I +E +
Sbjct: 120 HIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQM 179
Query: 375 LRFAIREGGRTVGAGVVVKII 395
RF +R+ G+T+ G V+K++
Sbjct: 180 GRFTLRDEGKTIAIGKVLKLV 200
>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|D Chain D, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|E Chain E, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|J Chain J, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 201
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 85/203 (41%), Gaps = 28/203 (13%)
Query: 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQ 272
F++P+ + GT++ G++E G ++ + ++ I T++ T E + +
Sbjct: 8 FIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEE-ISSSI 64
Query: 273 AGDNIGLLLRGTKREDVERGQVL-AKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 331
GD + L +RG DV+ G VL + + F +I L + + Y
Sbjct: 65 CGDQVRLRVRGDD-SDVQTGYVLTSTKNPVHATTRFIAQIAILE-----LPSILTTGYSC 118
Query: 332 QFYFRTT--DVTGSIELPK----NKEMVMP------GDNVLITVRLINPIAMEEGL---- 375
+ T +V+ + L K N++ P G ++ + P+ ME
Sbjct: 119 VMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQY 178
Query: 376 --RFAIREGGRTVGAGVVVKIIE 396
RF +R+ G TV G VVKI++
Sbjct: 179 MGRFTLRDQGTTVAVGKVVKILD 201
>pdb|3DKR|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DLT|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DYI|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DYV|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3E1G|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
Length = 251
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 16 GTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET--K 73
G + +D TT+ A + V F G+A + +D + R IN A +++
Sbjct: 164 GQLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVDGRLAYQLRDALINAARVDFHWYDD 223
Query: 74 ARHYAHVDCPGHA 86
A+H V+ HA
Sbjct: 224 AKHVITVNSAHHA 236
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase
Length = 488
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 18 IGHVDHGKTTLT------AAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
I V H TL+ A+ T L+ K G + K +QI K G+ TA +E
Sbjct: 237 IQRVAHSLKTLSFLAQGGTAVGTGLNTKPGFDVKIAEQIS-----KETGLKFQTAPNRFE 291
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQ 98
A H A V+C G + + + AQ
Sbjct: 292 ALAAHDAIVECSGALNTLACSLFKIAQ 318
>pdb|3NIX|A Chain A, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|B Chain B, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|C Chain C, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|D Chain D, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|E Chain E, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|F Chain F, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|G Chain G, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|H Chain H, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43
Length = 421
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 40 FGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHY 77
F GE +D+ PEE+ R N HI K+ +
Sbjct: 231 FVGEPSYFDEYTGTPEERXRAXIANEGHIAERFKSEEF 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,488,344
Number of Sequences: 62578
Number of extensions: 479765
Number of successful extensions: 1260
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 981
Number of HSP's gapped (non-prelim): 117
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)