Query psy15217
Match_columns 396
No_of_seqs 282 out of 3303
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 23:50:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0050 TufB GTPases - transla 100.0 7.8E-85 1.7E-89 568.6 35.7 394 1-396 1-394 (394)
2 COG5256 TEF1 Translation elong 100.0 4.1E-82 8.8E-87 580.3 42.9 378 8-396 3-428 (428)
3 KOG0460|consensus 100.0 1E-82 2.2E-87 565.2 29.4 393 4-396 46-438 (449)
4 PRK12736 elongation factor Tu; 100.0 3.6E-78 7.9E-83 583.1 50.6 394 1-396 1-394 (394)
5 PRK12735 elongation factor Tu; 100.0 9.8E-78 2.1E-82 580.5 51.1 394 1-396 1-396 (396)
6 TIGR00485 EF-Tu translation el 100.0 1E-77 2.2E-82 581.0 50.7 394 1-396 1-394 (394)
7 PRK00049 elongation factor Tu; 100.0 3.5E-77 7.5E-82 576.1 51.5 394 1-396 1-396 (396)
8 PLN03127 Elongation factor Tu; 100.0 6.9E-77 1.5E-81 578.3 49.3 393 4-396 53-447 (447)
9 PLN03126 Elongation factor Tu; 100.0 8.1E-76 1.8E-80 573.2 50.1 389 6-396 75-478 (478)
10 CHL00071 tufA elongation facto 100.0 1.3E-74 2.7E-79 561.1 49.1 394 1-396 1-409 (409)
11 PLN00043 elongation factor 1-a 100.0 2E-74 4.3E-79 561.8 47.7 378 7-395 2-430 (447)
12 PTZ00141 elongation factor 1- 100.0 2E-73 4.4E-78 555.2 47.3 377 8-395 3-430 (446)
13 PRK12317 elongation factor 1-a 100.0 2.6E-70 5.6E-75 535.6 44.9 376 9-395 3-421 (425)
14 TIGR00483 EF-1_alpha translati 100.0 5E-70 1.1E-74 533.3 46.8 378 7-395 2-423 (426)
15 KOG0458|consensus 100.0 9.8E-67 2.1E-71 494.5 35.1 378 8-396 173-603 (603)
16 COG2895 CysN GTPases - Sulfate 100.0 9.1E-66 2E-70 460.1 34.9 368 8-393 2-414 (431)
17 PRK05124 cysN sulfate adenylyl 100.0 7.2E-65 1.6E-69 498.7 44.0 375 6-395 21-438 (474)
18 TIGR02034 CysN sulfate adenyly 100.0 1.6E-64 3.5E-69 489.5 42.4 363 13-391 1-406 (406)
19 COG5258 GTPBP1 GTPase [General 100.0 1.8E-65 3.9E-70 461.7 32.6 366 7-394 112-526 (527)
20 PTZ00327 eukaryotic translatio 100.0 1.6E-62 3.4E-67 476.3 43.3 351 9-393 31-451 (460)
21 PRK05506 bifunctional sulfate 100.0 2.8E-61 6E-66 491.9 45.4 372 8-395 20-434 (632)
22 KOG0463|consensus 100.0 4.6E-63 1E-67 444.9 22.2 363 12-396 133-548 (641)
23 KOG0459|consensus 100.0 4.2E-62 9.1E-67 442.6 28.2 375 9-396 76-501 (501)
24 PRK04000 translation initiatio 100.0 5.4E-59 1.2E-63 450.8 44.2 353 5-392 2-411 (411)
25 TIGR03680 eif2g_arch translati 100.0 3.6E-58 7.8E-63 445.6 44.4 347 10-391 2-405 (406)
26 PRK10512 selenocysteinyl-tRNA- 100.0 3.9E-58 8.4E-63 462.1 42.5 336 13-394 1-340 (614)
27 KOG1143|consensus 100.0 2.4E-56 5.3E-61 401.1 25.9 363 12-395 167-583 (591)
28 TIGR00475 selB selenocysteine- 100.0 2.8E-54 6E-59 433.3 42.7 334 13-394 1-338 (581)
29 COG3276 SelB Selenocysteine-sp 100.0 3.6E-54 7.8E-59 398.8 33.6 335 13-392 1-337 (447)
30 COG5257 GCD11 Translation init 100.0 3.8E-49 8.3E-54 348.9 34.9 351 8-393 6-413 (415)
31 TIGR01394 TypA_BipA GTP-bindin 100.0 6.1E-42 1.3E-46 343.2 35.5 281 13-300 2-289 (594)
32 KOG0461|consensus 100.0 1E-40 2.2E-45 297.6 24.8 340 11-374 6-379 (522)
33 PRK10218 GTP-binding protein; 100.0 8.3E-39 1.8E-43 320.1 33.4 282 11-299 4-292 (607)
34 KOG0462|consensus 100.0 5.6E-40 1.2E-44 309.1 23.1 331 10-377 58-395 (650)
35 COG1217 TypA Predicted membran 100.0 1.7E-38 3.7E-43 293.7 27.6 283 11-300 4-293 (603)
36 COG0481 LepA Membrane GTPase L 100.0 2.9E-39 6.3E-44 299.6 22.1 331 8-376 5-344 (603)
37 TIGR01393 lepA GTP-binding pro 100.0 8.4E-38 1.8E-42 314.2 34.3 268 11-300 2-278 (595)
38 PRK05433 GTP-binding protein L 100.0 6.2E-38 1.3E-42 315.5 32.9 269 10-300 5-282 (600)
39 cd01884 EF_Tu EF-Tu subfamily. 100.0 1E-36 2.3E-41 266.0 23.1 193 11-205 1-195 (195)
40 KOG0052|consensus 100.0 1.2E-35 2.6E-40 272.6 9.7 328 7-395 2-372 (391)
41 PRK07560 elongation factor EF- 100.0 3.1E-33 6.8E-38 289.3 27.8 283 8-299 16-375 (731)
42 PRK00007 elongation factor G; 100.0 4.1E-32 8.9E-37 279.5 32.1 272 9-299 7-394 (693)
43 TIGR00487 IF-2 translation ini 100.0 3.5E-32 7.7E-37 272.2 30.4 245 11-296 86-339 (587)
44 KOG0466|consensus 100.0 4.5E-34 9.7E-39 251.4 14.1 349 10-393 36-458 (466)
45 PRK05306 infB translation init 100.0 2.8E-32 6E-37 278.7 28.6 248 10-297 288-542 (787)
46 PRK12739 elongation factor G; 100.0 5.3E-32 1.1E-36 278.9 30.4 271 10-299 6-391 (691)
47 PF00009 GTP_EFTU: Elongation 100.0 7E-33 1.5E-37 242.0 19.5 182 10-204 1-188 (188)
48 PRK00741 prfC peptide chain re 100.0 5E-31 1.1E-35 261.4 31.3 273 10-299 8-380 (526)
49 TIGR00484 EF-G translation elo 100.0 7.7E-31 1.7E-35 270.4 32.1 271 10-299 8-392 (689)
50 TIGR00503 prfC peptide chain r 100.0 1.1E-30 2.4E-35 259.0 31.2 270 9-299 8-381 (527)
51 COG0480 FusA Translation elong 100.0 2.5E-30 5.4E-35 260.5 30.2 272 9-299 7-392 (697)
52 PRK04004 translation initiatio 100.0 4.2E-30 9E-35 257.9 30.5 256 11-295 5-325 (586)
53 CHL00189 infB translation init 100.0 2.1E-30 4.6E-35 262.6 28.1 247 11-296 243-499 (742)
54 COG4108 PrfC Peptide chain rel 100.0 2.2E-31 4.8E-36 245.3 18.7 273 10-299 10-382 (528)
55 PRK13351 elongation factor G; 100.0 5.3E-30 1.1E-34 264.9 31.2 271 10-299 6-390 (687)
56 cd01883 EF1_alpha Eukaryotic e 100.0 4.6E-31 9.9E-36 235.8 20.2 186 14-202 1-216 (219)
57 TIGR00490 aEF-2 translation el 100.0 1.6E-30 3.6E-35 268.4 24.7 283 8-299 15-374 (720)
58 TIGR00491 aIF-2 translation in 100.0 9.4E-30 2E-34 254.2 29.0 254 13-295 5-323 (590)
59 cd04166 CysN_ATPS CysN_ATPS su 100.0 1.6E-30 3.5E-35 230.6 20.9 182 14-200 1-203 (208)
60 PRK12740 elongation factor G; 100.0 1.6E-29 3.5E-34 260.9 29.7 263 18-299 1-373 (668)
61 COG0532 InfB Translation initi 100.0 3E-29 6.5E-34 239.1 24.8 232 11-279 4-245 (509)
62 KOG1145|consensus 100.0 5.9E-29 1.3E-33 234.7 21.5 233 11-279 152-391 (683)
63 PLN00116 translation elongatio 100.0 3.8E-28 8.1E-33 254.3 29.4 286 8-299 15-471 (843)
64 PTZ00416 elongation factor 2; 100.0 1.9E-27 4.1E-32 248.6 30.8 288 8-299 15-467 (836)
65 cd01885 EF2 EF2 (for archaea a 100.0 9.9E-28 2.2E-32 212.9 19.3 190 13-205 1-222 (222)
66 cd04165 GTPBP1_like GTPBP1-lik 100.0 2.2E-27 4.9E-32 211.6 18.8 176 14-204 1-223 (224)
67 cd01888 eIF2_gamma eIF2-gamma 100.0 5.2E-27 1.1E-31 207.2 18.9 169 13-207 1-203 (203)
68 cd01889 SelB_euk SelB subfamil 99.9 8.6E-26 1.9E-30 198.0 21.0 172 13-206 1-189 (192)
69 PRK14845 translation initiatio 99.9 3.8E-25 8.3E-30 230.9 27.9 254 13-296 463-781 (1049)
70 cd01891 TypA_BipA TypA (tyrosi 99.9 4.2E-25 9E-30 194.0 21.0 191 12-205 2-194 (194)
71 cd01886 EF-G Elongation factor 99.9 3.3E-25 7.1E-30 203.0 19.6 129 14-143 1-131 (270)
72 KOG0465|consensus 99.9 6.3E-26 1.4E-30 216.6 14.8 270 10-299 37-421 (721)
73 cd04168 TetM_like Tet(M)-like 99.9 9.6E-25 2.1E-29 196.5 20.3 181 14-205 1-237 (237)
74 cd01890 LepA LepA subfamily. 99.9 9.3E-24 2E-28 182.8 19.5 174 13-205 1-179 (179)
75 cd04167 Snu114p Snu114p subfam 99.9 7.8E-24 1.7E-28 188.5 19.3 186 13-205 1-213 (213)
76 cd04171 SelB SelB subfamily. 99.9 1.7E-23 3.7E-28 178.2 20.6 162 13-200 1-163 (164)
77 cd04169 RF3 RF3 subfamily. Pe 99.9 2.1E-23 4.6E-28 190.9 21.1 131 12-143 2-138 (267)
78 cd00881 GTP_translation_factor 99.9 3.5E-23 7.7E-28 180.5 21.0 180 14-205 1-189 (189)
79 KOG1144|consensus 99.9 2.2E-23 4.7E-28 202.5 12.4 230 12-268 475-769 (1064)
80 KOG0469|consensus 99.9 6.7E-23 1.5E-27 191.6 15.1 288 6-296 13-471 (842)
81 cd04170 EF-G_bact Elongation f 99.9 3.8E-21 8.1E-26 177.3 20.0 129 14-143 1-131 (268)
82 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.6E-20 7.7E-25 158.5 18.8 159 14-201 2-164 (168)
83 KOG0467|consensus 99.8 4.1E-19 8.9E-24 174.0 25.7 172 8-180 5-204 (887)
84 KOG0464|consensus 99.8 4.4E-22 9.5E-27 182.5 4.6 271 12-299 37-419 (753)
85 PF02421 FeoB_N: Ferrous iron 99.8 1.3E-20 2.7E-25 156.7 11.5 148 13-198 1-156 (156)
86 COG1160 Predicted GTPases [Gen 99.8 5.5E-20 1.2E-24 173.2 16.8 160 11-200 177-348 (444)
87 TIGR03594 GTPase_EngA ribosome 99.8 1.1E-19 2.4E-24 179.1 17.9 162 10-201 170-342 (429)
88 COG1159 Era GTPase [General fu 99.8 1.7E-19 3.7E-24 161.2 16.9 161 11-204 5-173 (298)
89 PRK00093 GTP-binding protein D 99.8 4E-19 8.8E-24 175.3 19.8 160 10-200 171-341 (435)
90 cd04160 Arfrp1 Arfrp1 subfamil 99.8 1.8E-19 3.9E-24 154.1 15.0 161 14-200 1-166 (167)
91 TIGR00436 era GTP-binding prot 99.8 6.8E-19 1.5E-23 162.3 18.9 156 14-204 2-165 (270)
92 PRK15494 era GTPase Era; Provi 99.8 8.8E-19 1.9E-23 166.1 19.4 175 10-219 50-238 (339)
93 COG1160 Predicted GTPases [Gen 99.8 6.2E-19 1.3E-23 166.2 17.9 153 13-203 4-165 (444)
94 cd01895 EngA2 EngA2 subfamily. 99.8 2.1E-18 4.4E-23 147.9 18.2 159 12-200 2-172 (174)
95 cd03693 EF1_alpha_II EF1_alpha 99.8 3.9E-19 8.5E-24 135.4 11.7 89 210-300 2-90 (91)
96 cd01894 EngA1 EngA1 subfamily. 99.8 1.1E-18 2.5E-23 147.2 15.8 148 16-201 1-156 (157)
97 PF03143 GTP_EFTU_D3: Elongati 99.8 4.6E-19 1E-23 137.1 11.5 90 301-395 2-99 (99)
98 KOG0468|consensus 99.8 1.9E-17 4E-22 160.0 24.6 133 8-141 124-262 (971)
99 cd04154 Arl2 Arl2 subfamily. 99.8 1.3E-18 2.7E-23 149.9 15.2 158 8-200 10-172 (173)
100 cd01864 Rab19 Rab19 subfamily. 99.8 2.9E-18 6.2E-23 146.4 16.1 157 11-201 2-164 (165)
101 PRK03003 GTP-binding protein D 99.8 5.2E-18 1.1E-22 168.3 19.1 161 11-202 210-381 (472)
102 TIGR03598 GTPase_YsxC ribosome 99.8 1.1E-17 2.4E-22 144.9 18.3 149 8-179 14-176 (179)
103 TIGR03594 GTPase_EngA ribosome 99.8 1.1E-17 2.5E-22 164.8 19.2 154 14-205 1-162 (429)
104 PRK00089 era GTPase Era; Revie 99.8 2.5E-17 5.4E-22 153.9 20.3 159 12-204 5-172 (292)
105 cd04124 RabL2 RabL2 subfamily. 99.8 1.2E-17 2.6E-22 142.0 16.2 154 13-202 1-157 (161)
106 cd03694 GTPBP_II Domain II of 99.8 3.1E-18 6.8E-23 129.2 11.0 85 213-297 1-87 (87)
107 cd03698 eRF3_II_like eRF3_II_l 99.8 5.2E-18 1.1E-22 127.0 11.9 83 212-297 1-83 (83)
108 cd01898 Obg Obg subfamily. Th 99.8 1.2E-17 2.7E-22 143.1 15.4 153 14-201 2-169 (170)
109 cd01860 Rab5_related Rab5-rela 99.8 1.6E-17 3.6E-22 141.2 15.9 158 12-202 1-162 (163)
110 cd04149 Arf6 Arf6 subfamily. 99.8 1.6E-17 3.4E-22 142.3 15.8 156 10-200 7-167 (168)
111 cd04157 Arl6 Arl6 subfamily. 99.8 1.2E-17 2.6E-22 141.9 14.9 154 14-200 1-161 (162)
112 cd03697 EFTU_II EFTU_II: Elong 99.8 3.2E-18 6.9E-23 129.3 9.8 87 213-299 1-87 (87)
113 cd03706 mtEFTU_III Domain III 99.8 1.2E-17 2.7E-22 128.0 12.9 92 303-394 2-93 (93)
114 cd04145 M_R_Ras_like M-Ras/R-R 99.8 2.5E-17 5.4E-22 140.2 16.2 155 11-201 1-162 (164)
115 cd04114 Rab30 Rab30 subfamily. 99.8 2.1E-17 4.5E-22 141.5 15.7 157 10-201 5-167 (169)
116 cd04151 Arl1 Arl1 subfamily. 99.8 1.6E-17 3.4E-22 140.8 14.7 152 14-200 1-157 (158)
117 cd04150 Arf1_5_like Arf1-Arf5- 99.8 2.2E-17 4.7E-22 140.1 15.5 153 13-200 1-158 (159)
118 PRK04213 GTP-binding protein; 99.8 6.3E-17 1.4E-21 142.8 18.7 162 9-205 6-194 (201)
119 PLN00223 ADP-ribosylation fact 99.8 2.9E-17 6.4E-22 142.3 16.2 158 10-202 15-177 (181)
120 cd01862 Rab7 Rab7 subfamily. 99.8 3.8E-17 8.2E-22 140.2 16.2 153 13-202 1-166 (172)
121 cd01897 NOG NOG1 is a nucleola 99.8 4.6E-17 1E-21 139.2 16.4 153 13-202 1-167 (168)
122 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 4.9E-17 1.1E-21 143.5 16.9 156 13-202 1-167 (201)
123 cd01865 Rab3 Rab3 subfamily. 99.8 3.3E-17 7.2E-22 139.9 15.3 157 13-202 2-162 (165)
124 TIGR00231 small_GTP small GTP- 99.7 1.8E-17 3.8E-22 139.4 13.4 151 12-199 1-160 (161)
125 PRK03003 GTP-binding protein D 99.7 8.1E-17 1.8E-21 159.7 20.2 156 11-204 37-200 (472)
126 cd04113 Rab4 Rab4 subfamily. 99.7 3.2E-17 7E-22 139.2 14.7 153 13-200 1-159 (161)
127 cd04106 Rab23_lke Rab23-like s 99.7 5.6E-17 1.2E-21 137.8 16.1 153 13-200 1-160 (162)
128 cd04164 trmE TrmE (MnmE, ThdF, 99.7 5E-17 1.1E-21 137.0 15.5 145 13-201 2-155 (157)
129 cd04116 Rab9 Rab9 subfamily. 99.7 1.1E-16 2.4E-21 137.3 17.6 155 11-200 4-168 (170)
130 smart00177 ARF ARF-like small 99.7 5.9E-17 1.3E-21 139.8 15.9 158 10-202 11-173 (175)
131 KOG0092|consensus 99.7 3E-17 6.6E-22 136.6 13.3 165 10-206 3-170 (200)
132 cd00878 Arf_Arl Arf (ADP-ribos 99.7 3E-17 6.5E-22 139.0 13.7 152 14-200 1-157 (158)
133 cd00154 Rab Rab family. Rab G 99.7 6.8E-17 1.5E-21 136.1 15.7 152 13-199 1-158 (159)
134 cd04089 eRF3_II eRF3_II: domai 99.7 3E-17 6.5E-22 122.5 11.9 82 212-297 1-82 (82)
135 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 6E-17 1.3E-21 139.6 15.5 155 11-200 14-173 (174)
136 cd04120 Rab12 Rab12 subfamily. 99.7 9.1E-17 2E-21 141.3 16.8 156 13-202 1-162 (202)
137 cd01879 FeoB Ferrous iron tran 99.7 2.4E-17 5.2E-22 139.4 12.7 147 17-201 1-155 (158)
138 cd01866 Rab2 Rab2 subfamily. 99.7 6.8E-17 1.5E-21 138.4 15.5 159 11-202 3-165 (168)
139 cd01861 Rab6 Rab6 subfamily. 99.7 1.1E-16 2.5E-21 135.7 16.7 154 13-201 1-160 (161)
140 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 7E-17 1.5E-21 137.9 15.5 156 12-202 2-163 (166)
141 PRK00454 engB GTP-binding prot 99.7 2.9E-16 6.4E-21 137.9 19.7 159 10-203 22-194 (196)
142 PRK09518 bifunctional cytidyla 99.7 7.8E-17 1.7E-21 167.2 18.7 162 11-203 449-621 (712)
143 cd01867 Rab8_Rab10_Rab13_like 99.7 1E-16 2.2E-21 137.2 16.0 159 11-202 2-164 (167)
144 cd04122 Rab14 Rab14 subfamily. 99.7 9E-17 2E-21 137.3 15.6 157 12-201 2-162 (166)
145 smart00173 RAS Ras subfamily o 99.7 6.4E-17 1.4E-21 137.8 14.6 156 13-203 1-162 (164)
146 cd04136 Rap_like Rap-like subf 99.7 7.5E-17 1.6E-21 137.1 14.9 152 13-201 2-161 (163)
147 cd00879 Sar1 Sar1 subfamily. 99.7 5.2E-17 1.1E-21 142.0 14.3 157 10-201 17-189 (190)
148 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.2E-16 2.6E-21 135.5 15.9 154 13-201 2-160 (162)
149 cd04112 Rab26 Rab26 subfamily. 99.7 8.1E-17 1.8E-21 140.9 15.2 157 13-203 1-163 (191)
150 PRK00093 GTP-binding protein D 99.7 1.5E-16 3.2E-21 157.1 18.9 153 13-203 2-162 (435)
151 cd04119 RJL RJL (RabJ-Like) su 99.7 1.2E-16 2.7E-21 136.3 15.9 154 13-201 1-165 (168)
152 COG0218 Predicted GTPase [Gene 99.7 3.9E-16 8.4E-21 132.5 18.6 163 8-203 20-197 (200)
153 cd04163 Era Era subfamily. Er 99.7 4.1E-16 9E-21 132.5 19.1 157 12-201 3-167 (168)
154 cd04158 ARD1 ARD1 subfamily. 99.7 7.6E-17 1.6E-21 138.3 14.3 155 14-203 1-161 (169)
155 PRK15467 ethanolamine utilizat 99.7 7.6E-17 1.6E-21 136.5 14.1 141 14-203 3-147 (158)
156 smart00175 RAB Rab subfamily o 99.7 9.1E-17 2E-21 136.7 14.7 155 13-202 1-161 (164)
157 KOG0094|consensus 99.7 5.7E-16 1.2E-20 129.0 18.7 163 8-206 18-188 (221)
158 cd04155 Arl3 Arl3 subfamily. 99.7 9.2E-17 2E-21 138.1 14.6 159 7-200 9-172 (173)
159 smart00178 SAR Sar1p-like memb 99.7 1.5E-16 3.2E-21 138.4 15.8 156 10-200 15-182 (184)
160 PTZ00133 ADP-ribosylation fact 99.7 1.6E-16 3.4E-21 137.9 15.8 158 10-202 15-177 (182)
161 PLN03110 Rab GTPase; Provision 99.7 1.4E-16 3E-21 142.1 15.8 159 9-202 9-173 (216)
162 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.6E-16 3.4E-21 138.1 15.7 160 12-202 3-169 (183)
163 cd04127 Rab27A Rab27a subfamil 99.7 2E-16 4.4E-21 137.0 16.3 153 11-201 3-175 (180)
164 cd01863 Rab18 Rab18 subfamily. 99.7 1.1E-16 2.5E-21 135.8 14.5 154 13-200 1-159 (161)
165 cd01893 Miro1 Miro1 subfamily. 99.7 2.4E-16 5.1E-21 134.8 16.5 159 13-202 1-163 (166)
166 cd03704 eRF3c_III This family 99.7 7.9E-17 1.7E-21 127.1 12.2 87 304-394 3-108 (108)
167 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 1.9E-16 4E-21 135.9 15.6 157 14-202 2-164 (170)
168 cd04140 ARHI_like ARHI subfami 99.7 1.7E-16 3.6E-21 135.5 15.2 154 13-200 2-162 (165)
169 PTZ00369 Ras-like protein; Pro 99.7 9.9E-17 2.1E-21 140.1 14.1 159 11-203 4-167 (189)
170 cd01868 Rab11_like Rab11-like. 99.7 2.6E-16 5.6E-21 134.2 16.3 155 12-201 3-163 (165)
171 cd01882 BMS1 Bms1. Bms1 is an 99.7 1.2E-15 2.7E-20 136.5 21.3 184 9-222 36-220 (225)
172 cd04175 Rap1 Rap1 subgroup. T 99.7 1.1E-16 2.3E-21 136.5 13.6 154 13-202 2-162 (164)
173 cd04121 Rab40 Rab40 subfamily. 99.7 3.1E-16 6.7E-21 136.5 16.8 157 11-202 5-166 (189)
174 cd04110 Rab35 Rab35 subfamily. 99.7 1.9E-16 4.1E-21 139.5 15.6 157 11-202 5-166 (199)
175 PLN03118 Rab family protein; P 99.7 3.1E-16 6.8E-21 139.4 17.1 160 10-203 12-177 (211)
176 cd04115 Rab33B_Rab33A Rab33B/R 99.7 3.6E-16 7.8E-21 134.2 16.6 159 12-202 2-168 (170)
177 cd04176 Rap2 Rap2 subgroup. T 99.7 1.9E-16 4.1E-21 134.8 14.6 156 13-202 2-162 (163)
178 TIGR02528 EutP ethanolamine ut 99.7 9.1E-17 2E-21 133.5 12.3 136 14-199 2-141 (142)
179 cd04109 Rab28 Rab28 subfamily. 99.7 3.3E-16 7.2E-21 139.7 16.6 157 13-203 1-166 (215)
180 cd01878 HflX HflX subfamily. 99.7 2.2E-16 4.7E-21 139.7 15.3 151 10-201 39-203 (204)
181 cd03707 EFTU_III Domain III of 99.7 1.4E-16 3E-21 121.4 12.0 88 304-391 3-90 (90)
182 PRK09518 bifunctional cytidyla 99.7 5.2E-16 1.1E-20 161.1 20.3 156 11-204 274-437 (712)
183 cd04159 Arl10_like Arl10-like 99.7 2.6E-16 5.7E-21 132.6 14.9 152 15-200 2-158 (159)
184 cd00157 Rho Rho (Ras homology) 99.7 1.6E-16 3.4E-21 136.2 13.7 156 13-200 1-170 (171)
185 cd04101 RabL4 RabL4 (Rab-like4 99.7 3.8E-16 8.2E-21 133.0 15.9 156 13-201 1-162 (164)
186 KOG0084|consensus 99.7 3.8E-16 8.3E-21 130.6 15.2 158 10-201 7-170 (205)
187 cd04118 Rab24 Rab24 subfamily. 99.7 2.2E-16 4.8E-21 138.4 14.7 159 13-202 1-165 (193)
188 cd00877 Ran Ran (Ras-related n 99.7 2E-16 4.4E-21 135.2 14.0 154 13-203 1-159 (166)
189 cd04161 Arl2l1_Arl13_like Arl2 99.7 2.1E-16 4.6E-21 135.2 14.0 159 14-200 1-166 (167)
190 cd01875 RhoG RhoG subfamily. 99.7 9.8E-16 2.1E-20 134.0 18.5 158 12-205 3-179 (191)
191 cd01874 Cdc42 Cdc42 subfamily. 99.7 5.1E-16 1.1E-20 133.9 16.4 155 13-200 2-172 (175)
192 cd04144 Ras2 Ras2 subfamily. 99.7 1.9E-16 4.1E-21 138.5 13.9 153 14-203 1-163 (190)
193 cd03696 selB_II selB_II: this 99.7 1.2E-16 2.6E-21 119.7 10.7 83 213-297 1-83 (83)
194 COG2229 Predicted GTPase [Gene 99.7 9.6E-16 2.1E-20 127.1 17.0 167 10-201 8-176 (187)
195 cd04128 Spg1 Spg1p. Spg1p (se 99.7 6.2E-16 1.3E-20 134.1 16.4 157 13-202 1-165 (182)
196 PRK09554 feoB ferrous iron tra 99.7 3.1E-16 6.8E-21 162.1 16.8 153 12-202 3-167 (772)
197 PRK05291 trmE tRNA modificatio 99.7 2.3E-16 5E-21 155.0 14.8 149 11-203 214-370 (449)
198 cd00880 Era_like Era (E. coli 99.7 5.9E-16 1.3E-20 130.2 15.4 154 17-201 1-162 (163)
199 cd04135 Tc10 TC10 subfamily. 99.7 3.8E-16 8.3E-21 134.4 14.5 155 13-200 1-171 (174)
200 cd04156 ARLTS1 ARLTS1 subfamil 99.7 6.1E-16 1.3E-20 131.2 15.1 153 14-200 1-159 (160)
201 cd01871 Rac1_like Rac1-like su 99.7 8.9E-16 1.9E-20 132.2 16.2 156 12-200 1-172 (174)
202 cd04134 Rho3 Rho3 subfamily. 99.7 6.7E-16 1.5E-20 134.9 15.6 160 13-205 1-176 (189)
203 cd01892 Miro2 Miro2 subfamily. 99.7 4.9E-16 1.1E-20 133.2 14.5 159 10-202 2-165 (169)
204 cd04177 RSR1 RSR1 subgroup. R 99.7 4.8E-16 1E-20 133.1 14.1 158 12-202 1-163 (168)
205 cd04147 Ras_dva Ras-dva subfam 99.7 9.7E-16 2.1E-20 134.9 16.2 156 14-203 1-163 (198)
206 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 8.6E-16 1.9E-20 132.1 15.4 154 12-202 2-163 (172)
207 cd04123 Rab21 Rab21 subfamily. 99.7 9.3E-16 2E-20 130.0 15.4 154 13-201 1-160 (162)
208 PF00025 Arf: ADP-ribosylation 99.7 3.8E-16 8.2E-21 134.6 13.0 158 9-201 11-174 (175)
209 cd04139 RalA_RalB RalA/RalB su 99.7 6.3E-16 1.4E-20 131.4 14.0 154 13-202 1-161 (164)
210 cd04133 Rop_like Rop subfamily 99.7 6.1E-16 1.3E-20 133.2 13.9 157 13-202 2-172 (176)
211 smart00174 RHO Rho (Ras homolo 99.7 8.9E-16 1.9E-20 132.1 14.9 152 15-201 1-170 (174)
212 cd04142 RRP22 RRP22 subfamily. 99.7 1.9E-15 4.1E-20 132.8 17.2 154 13-203 1-174 (198)
213 TIGR03156 GTP_HflX GTP-binding 99.7 1.2E-15 2.6E-20 144.9 17.0 149 11-201 188-350 (351)
214 cd04126 Rab20 Rab20 subfamily. 99.7 7.3E-16 1.6E-20 137.1 14.5 159 13-201 1-188 (220)
215 PLN03071 GTP-binding nuclear p 99.7 7.5E-16 1.6E-20 137.6 14.6 156 10-202 11-171 (219)
216 cd03708 GTPBP_III Domain III o 99.7 4.5E-16 9.8E-21 117.8 11.1 85 303-394 2-87 (87)
217 PLN03108 Rab family protein; P 99.7 1.5E-15 3.2E-20 135.0 16.2 159 11-202 5-167 (210)
218 cd04132 Rho4_like Rho4-like su 99.7 9.6E-16 2.1E-20 133.6 14.8 157 13-202 1-166 (187)
219 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 4.5E-16 9.6E-21 132.8 12.4 157 15-200 2-163 (164)
220 cd04111 Rab39 Rab39 subfamily. 99.7 1.4E-15 3.1E-20 135.0 16.1 157 12-202 2-165 (211)
221 PRK12298 obgE GTPase CgtA; Rev 99.7 1.6E-15 3.4E-20 145.8 17.4 158 13-204 160-334 (390)
222 cd04117 Rab15 Rab15 subfamily. 99.7 1.4E-15 3E-20 129.3 15.2 153 13-200 1-159 (161)
223 PRK12299 obgE GTPase CgtA; Rev 99.7 1.7E-15 3.7E-20 142.7 17.2 157 12-203 158-328 (335)
224 cd03695 CysN_NodQ_II CysN_NodQ 99.7 7.9E-16 1.7E-20 114.3 11.7 81 213-297 1-81 (81)
225 cd01870 RhoA_like RhoA-like su 99.7 1.7E-15 3.7E-20 130.4 15.7 156 13-201 2-173 (175)
226 cd04125 RabA_like RabA-like su 99.7 1.4E-15 3E-20 132.7 15.1 157 13-202 1-161 (188)
227 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1.4E-15 3.1E-20 148.5 16.7 149 10-200 201-357 (442)
228 cd04143 Rhes_like Rhes_like su 99.7 1.5E-15 3.2E-20 137.8 15.6 158 13-206 1-174 (247)
229 cd04093 HBS1_C HBS1_C: this fa 99.7 9.4E-16 2E-20 120.9 11.7 87 303-394 2-107 (107)
230 TIGR02729 Obg_CgtA Obg family 99.7 2.8E-15 6E-20 141.2 17.0 155 12-202 157-328 (329)
231 cd04130 Wrch_1 Wrch-1 subfamil 99.7 7.5E-16 1.6E-20 132.6 12.1 155 13-199 1-170 (173)
232 cd01876 YihA_EngB The YihA (En 99.7 8.1E-15 1.8E-19 124.8 18.1 155 15-201 2-169 (170)
233 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 2.7E-15 5.9E-20 129.9 15.3 158 10-200 3-177 (182)
234 cd03705 EF1_alpha_III Domain I 99.7 1E-15 2.3E-20 120.0 11.3 84 303-391 2-104 (104)
235 cd01881 Obg_like The Obg-like 99.7 2.2E-15 4.8E-20 129.6 14.2 149 17-200 1-174 (176)
236 cd00876 Ras Ras family. The R 99.7 3.1E-15 6.7E-20 126.5 14.8 152 14-201 1-159 (160)
237 cd04137 RheB Rheb (Ras Homolog 99.7 1.7E-15 3.7E-20 131.1 13.4 154 13-202 2-162 (180)
238 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 4.9E-15 1.1E-19 132.6 16.6 169 1-201 1-186 (232)
239 PRK12296 obgE GTPase CgtA; Rev 99.6 6.8E-15 1.5E-19 143.8 18.1 157 11-203 158-340 (500)
240 COG0486 ThdF Predicted GTPase 99.6 3.1E-15 6.6E-20 141.7 14.9 155 10-204 215-377 (454)
241 cd04131 Rnd Rnd subfamily. Th 99.6 3.7E-15 8E-20 128.7 14.0 155 13-200 2-173 (178)
242 cd04148 RGK RGK subfamily. Th 99.6 4.3E-15 9.2E-20 132.9 14.2 157 13-203 1-163 (221)
243 PRK12297 obgE GTPase CgtA; Rev 99.6 7.7E-15 1.7E-19 141.7 16.7 152 13-203 159-327 (424)
244 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 1.8E-14 3.8E-19 128.4 17.6 153 13-200 2-173 (222)
245 cd04146 RERG_RasL11_like RERG/ 99.6 3.1E-15 6.7E-20 127.6 12.4 156 14-202 1-163 (165)
246 KOG0078|consensus 99.6 1.7E-14 3.7E-19 122.6 15.7 154 10-201 10-172 (207)
247 PF10662 PduV-EutP: Ethanolami 99.6 4.9E-15 1.1E-19 120.4 11.9 136 14-199 3-142 (143)
248 cd01513 Translation_factor_III 99.6 4.7E-15 1E-19 115.9 11.0 84 303-391 2-102 (102)
249 smart00176 RAN Ran (Ras-relate 99.6 1.3E-14 2.8E-19 127.4 14.7 146 18-202 1-153 (200)
250 KOG0098|consensus 99.6 1.4E-14 3E-19 119.9 13.7 155 11-199 5-164 (216)
251 PRK11058 GTPase HflX; Provisio 99.6 1.2E-14 2.6E-19 141.2 15.5 152 13-203 198-362 (426)
252 KOG0394|consensus 99.6 1.8E-14 3.9E-19 119.0 13.0 159 8-200 5-175 (210)
253 COG0370 FeoB Fe2+ transport sy 99.6 1.3E-14 2.7E-19 143.3 14.0 151 12-203 3-164 (653)
254 cd00882 Ras_like_GTPase Ras-li 99.6 1.6E-14 3.4E-19 120.1 12.7 148 17-199 1-156 (157)
255 TIGR00437 feoB ferrous iron tr 99.6 8.8E-15 1.9E-19 148.0 13.2 146 19-202 1-154 (591)
256 KOG0095|consensus 99.6 5.7E-14 1.2E-18 111.7 13.9 156 10-202 5-168 (213)
257 PF00071 Ras: Ras family; Int 99.6 3.5E-14 7.7E-19 120.5 13.6 151 14-201 1-159 (162)
258 KOG1423|consensus 99.6 1.1E-13 2.4E-18 123.3 16.7 172 7-204 67-272 (379)
259 cd04094 selB_III This family r 99.6 4.5E-14 9.7E-19 109.0 12.6 95 292-391 1-97 (97)
260 cd04104 p47_IIGP_like p47 (47- 99.6 9.9E-14 2.2E-18 121.9 15.9 167 12-206 1-187 (197)
261 KOG0073|consensus 99.6 8.3E-14 1.8E-18 112.8 13.8 156 10-201 14-176 (185)
262 KOG0080|consensus 99.6 6.1E-14 1.3E-18 113.0 12.7 146 10-178 9-159 (209)
263 KOG0087|consensus 99.6 7.9E-14 1.7E-18 118.0 13.3 142 10-179 12-162 (222)
264 cd01896 DRG The developmentall 99.5 2.2E-13 4.7E-18 122.6 16.7 81 14-110 2-89 (233)
265 cd04105 SR_beta Signal recogni 99.5 1.3E-13 2.8E-18 121.6 14.7 112 14-143 2-124 (203)
266 cd04129 Rho2 Rho2 subfamily. 99.5 7.1E-14 1.5E-18 121.8 12.7 158 13-202 2-172 (187)
267 KOG0086|consensus 99.5 2.3E-13 5.1E-18 108.6 14.3 145 11-179 8-157 (214)
268 cd04103 Centaurin_gamma Centau 99.5 9.9E-14 2.2E-18 117.5 13.1 149 13-200 1-156 (158)
269 PF01926 MMR_HSR1: 50S ribosom 99.5 7E-14 1.5E-18 112.0 11.2 107 14-137 1-116 (116)
270 PTZ00132 GTP-binding nuclear p 99.5 3.9E-13 8.5E-18 119.9 16.3 158 8-202 5-167 (215)
271 COG3596 Predicted GTPase [Gene 99.5 1.5E-13 3.2E-18 121.5 13.2 168 9-205 36-224 (296)
272 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 2.4E-13 5.3E-18 119.4 14.3 167 13-204 1-185 (196)
273 COG5192 BMS1 GTP-binding prote 99.5 1.5E-12 3.2E-17 124.5 18.5 227 4-259 61-299 (1077)
274 PRK09866 hypothetical protein; 99.5 7.5E-13 1.6E-17 130.3 17.0 113 75-200 230-350 (741)
275 cd01873 RhoBTB RhoBTB subfamil 99.5 4.9E-13 1.1E-17 117.1 14.0 158 12-200 2-193 (195)
276 cd04095 CysN_NoDQ_III TCysN_No 99.5 2.6E-13 5.7E-18 106.0 10.1 83 303-391 2-103 (103)
277 KOG0076|consensus 99.5 4.6E-13 9.9E-18 109.6 10.8 173 6-204 11-188 (197)
278 PF09439 SRPRB: Signal recogni 99.5 4.2E-13 9.2E-18 114.1 11.1 126 12-157 3-144 (181)
279 KOG1489|consensus 99.5 1.1E-12 2.4E-17 117.7 13.8 153 11-200 195-364 (366)
280 cd03688 eIF2_gamma_II eIF2_gam 99.5 8.6E-13 1.9E-17 100.8 11.2 90 209-298 2-112 (113)
281 KOG0070|consensus 99.5 2.6E-13 5.6E-18 113.0 9.0 160 9-203 14-178 (181)
282 KOG1191|consensus 99.5 2.8E-13 6E-18 128.2 10.1 165 8-202 264-449 (531)
283 cd01850 CDC_Septin CDC/Septin. 99.5 4.2E-12 9.2E-17 117.0 17.7 150 12-175 4-184 (276)
284 PLN00023 GTP-binding protein; 99.5 9.7E-13 2.1E-17 121.4 13.2 140 10-164 19-190 (334)
285 COG2262 HflX GTPases [General 99.4 2.4E-12 5.2E-17 120.1 14.7 154 10-203 190-356 (411)
286 KOG0093|consensus 99.4 1.4E-12 3E-17 103.6 10.9 157 12-202 21-182 (193)
287 KOG0075|consensus 99.4 1E-12 2.3E-17 104.4 9.7 158 11-202 19-181 (186)
288 cd04102 RabL3 RabL3 (Rab-like3 99.4 4.7E-12 1E-16 111.2 14.8 145 13-177 1-174 (202)
289 PRK13768 GTPase; Provisional 99.4 5.6E-12 1.2E-16 114.8 15.7 116 74-204 96-248 (253)
290 COG1084 Predicted GTPase [Gene 99.4 3.4E-12 7.4E-17 115.6 13.4 117 11-144 167-296 (346)
291 KOG0090|consensus 99.4 4.9E-12 1.1E-16 107.4 13.2 160 12-201 38-237 (238)
292 COG1100 GTPase SAR1 and relate 99.4 1E-11 2.2E-16 110.9 16.1 116 12-144 5-127 (219)
293 PF08477 Miro: Miro-like prote 99.4 7.3E-13 1.6E-17 106.4 7.7 110 14-139 1-119 (119)
294 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 2.3E-11 5E-16 108.2 17.4 160 14-202 1-175 (232)
295 PF03029 ATP_bind_1: Conserved 99.4 2.6E-12 5.6E-17 115.5 10.5 169 17-201 1-235 (238)
296 KOG0079|consensus 99.4 7.5E-12 1.6E-16 99.6 11.3 156 12-200 8-166 (198)
297 PRK09435 membrane ATPase/prote 99.3 1.8E-11 4E-16 114.5 14.8 176 9-203 53-260 (332)
298 KOG0071|consensus 99.3 3.4E-11 7.3E-16 95.1 13.2 159 10-203 15-178 (180)
299 KOG0091|consensus 99.3 1.9E-11 4E-16 99.1 11.8 152 12-200 8-170 (213)
300 PF03308 ArgK: ArgK protein; 99.3 9.6E-12 2.1E-16 110.2 10.0 173 7-201 24-228 (266)
301 KOG0097|consensus 99.3 5.8E-11 1.3E-15 93.7 12.6 142 11-179 10-159 (215)
302 KOG0088|consensus 99.3 2.3E-11 5.1E-16 97.9 10.5 159 10-201 11-173 (218)
303 cd03692 mtIF2_IVc mtIF2_IVc: t 99.3 6.3E-11 1.4E-15 88.5 11.9 79 215-295 3-82 (84)
304 KOG0081|consensus 99.3 9.4E-12 2E-16 100.2 6.1 145 12-180 9-168 (219)
305 PF05049 IIGP: Interferon-indu 99.3 8.2E-11 1.8E-15 110.9 13.5 171 10-207 33-222 (376)
306 cd01853 Toc34_like Toc34-like 99.2 4.4E-10 9.6E-15 101.7 17.2 121 8-143 27-164 (249)
307 COG0536 Obg Predicted GTPase [ 99.2 1.7E-10 3.6E-15 105.2 14.3 153 13-203 160-333 (369)
308 COG1703 ArgK Putative periplas 99.2 1.4E-10 3.1E-15 104.0 13.1 177 8-202 47-253 (323)
309 KOG1532|consensus 99.2 2.4E-10 5.1E-15 100.8 14.0 177 10-202 17-263 (366)
310 COG1163 DRG Predicted GTPase [ 99.2 1.2E-10 2.7E-15 105.2 11.7 85 11-111 62-153 (365)
311 PTZ00099 rab6; Provisional 99.2 1.8E-10 4E-15 99.1 11.8 112 74-204 28-143 (176)
312 cd01899 Ygr210 Ygr210 subfamil 99.2 9.6E-10 2.1E-14 102.9 17.2 80 15-110 1-111 (318)
313 KOG4252|consensus 99.2 1.8E-11 3.9E-16 100.6 4.8 146 11-179 19-167 (246)
314 KOG0074|consensus 99.2 2.4E-10 5.1E-15 90.5 9.8 147 8-179 13-165 (185)
315 PF04548 AIG1: AIG1 family; I 99.2 4.9E-10 1.1E-14 99.5 13.3 166 13-202 1-185 (212)
316 KOG0072|consensus 99.2 5.9E-11 1.3E-15 94.2 6.3 158 11-202 17-178 (182)
317 COG4917 EutP Ethanolamine util 99.1 2.7E-10 5.9E-15 88.4 9.0 137 14-200 3-143 (148)
318 KOG0395|consensus 99.1 3.9E-10 8.5E-15 98.4 11.2 155 11-202 2-164 (196)
319 TIGR00750 lao LAO/AO transport 99.1 4.5E-09 9.8E-14 98.3 17.2 173 10-201 32-236 (300)
320 PRK09602 translation-associate 99.1 3.8E-09 8.3E-14 101.9 16.8 81 13-109 2-113 (396)
321 PF00350 Dynamin_N: Dynamin fa 99.1 7.4E-10 1.6E-14 94.6 9.5 66 73-138 99-168 (168)
322 PF03144 GTP_EFTU_D2: Elongati 99.1 2.2E-09 4.8E-14 78.4 10.5 70 227-296 1-74 (74)
323 KOG0083|consensus 99.1 7.4E-11 1.6E-15 92.3 2.6 140 17-180 2-147 (192)
324 TIGR00073 hypB hydrogenase acc 99.0 2.8E-09 6.1E-14 94.3 12.6 167 9-201 19-205 (207)
325 TIGR00991 3a0901s02IAP34 GTP-b 99.0 6.3E-09 1.4E-13 95.7 15.1 120 8-142 34-167 (313)
326 TIGR02836 spore_IV_A stage IV 99.0 3.5E-09 7.5E-14 99.7 13.5 155 8-177 13-219 (492)
327 cd01342 Translation_Factor_II_ 99.0 4.5E-09 9.7E-14 77.9 11.6 82 213-296 1-82 (83)
328 COG0378 HypB Ni2+-binding GTPa 99.0 2.5E-09 5.3E-14 90.5 10.7 164 12-201 13-199 (202)
329 TIGR00101 ureG urease accessor 99.0 4.1E-09 9E-14 92.4 12.0 166 12-202 1-195 (199)
330 KOG0077|consensus 99.0 1.4E-09 3.1E-14 88.7 8.1 114 10-143 18-136 (193)
331 PF00735 Septin: Septin; Inte 99.0 1.7E-08 3.6E-13 93.1 15.4 143 12-163 4-176 (281)
332 PRK10463 hydrogenase nickel in 99.0 2.3E-09 5E-14 97.9 8.7 167 9-200 101-286 (290)
333 PF14578 GTP_EFTU_D4: Elongati 98.9 3.2E-08 7E-13 71.8 12.5 78 211-296 3-80 (81)
334 smart00053 DYNc Dynamin, GTPas 98.9 7.7E-09 1.7E-13 92.7 11.5 69 74-143 124-207 (240)
335 COG5019 CDC3 Septin family pro 98.9 8.9E-08 1.9E-12 88.6 17.3 144 10-163 21-196 (373)
336 PRK09601 GTP-binding protein Y 98.9 6.4E-08 1.4E-12 91.5 15.2 82 13-110 3-108 (364)
337 KOG3883|consensus 98.8 2.3E-07 5.1E-12 74.7 15.3 159 11-207 8-179 (198)
338 KOG0393|consensus 98.8 1.1E-08 2.4E-13 87.7 8.1 157 11-199 3-175 (198)
339 KOG3886|consensus 98.8 4.4E-08 9.6E-13 84.5 11.3 145 12-177 4-163 (295)
340 TIGR00993 3a0901s04IAP86 chlor 98.8 2.6E-07 5.7E-12 92.1 16.2 116 12-142 118-250 (763)
341 KOG1547|consensus 98.7 6.1E-07 1.3E-11 78.0 15.2 150 11-176 45-226 (336)
342 KOG2486|consensus 98.7 8.6E-08 1.9E-12 85.2 8.6 151 10-179 134-302 (320)
343 KOG1707|consensus 98.6 1.2E-07 2.7E-12 92.1 9.6 120 7-143 4-130 (625)
344 KOG2655|consensus 98.6 7.6E-07 1.6E-11 83.2 13.9 142 12-163 21-192 (366)
345 PTZ00258 GTP-binding protein; 98.6 1.7E-07 3.6E-12 89.7 9.7 84 10-109 19-126 (390)
346 KOG1673|consensus 98.6 7.4E-07 1.6E-11 72.1 11.8 157 11-200 19-183 (205)
347 cd01900 YchF YchF subfamily. 98.6 1.3E-07 2.9E-12 86.5 7.9 80 15-110 1-104 (274)
348 KOG0410|consensus 98.6 3.1E-07 6.7E-12 83.3 10.0 151 10-203 176-341 (410)
349 cd03691 BipA_TypA_II BipA_TypA 98.5 1.6E-06 3.4E-11 65.2 10.9 80 213-296 1-85 (86)
350 cd03690 Tet_II Tet_II: This su 98.5 1.1E-06 2.3E-11 65.9 9.8 80 210-296 1-84 (85)
351 cd04092 mtEFG2_II_like mtEFG2_ 98.5 1.5E-06 3.2E-11 64.8 9.8 78 214-297 2-83 (83)
352 KOG1490|consensus 98.5 3.4E-07 7.4E-12 87.5 7.7 147 10-179 166-327 (620)
353 cd04088 EFG_mtEFG_II EFG_mtEFG 98.5 1.9E-06 4.2E-11 64.2 9.9 78 214-297 2-83 (83)
354 KOG0448|consensus 98.4 3.1E-06 6.7E-11 83.9 13.4 100 76-177 207-310 (749)
355 cd01859 MJ1464 MJ1464. This f 98.4 1.6E-06 3.4E-11 73.1 10.1 90 93-203 7-96 (156)
356 cd03699 lepA_II lepA_II: This 98.4 3.6E-06 7.8E-11 63.2 10.7 82 213-297 1-86 (86)
357 KOG1534|consensus 98.4 1.6E-06 3.5E-11 74.0 9.7 127 13-143 4-179 (273)
358 KOG0096|consensus 98.4 9.3E-07 2E-11 74.0 7.8 140 10-178 8-154 (216)
359 COG0012 Predicted GTPase, prob 98.4 4.9E-06 1.1E-10 77.8 13.4 83 12-110 2-109 (372)
360 TIGR01425 SRP54_euk signal rec 98.4 2.8E-06 6E-11 82.3 12.2 127 11-143 99-254 (429)
361 KOG3905|consensus 98.4 5.8E-06 1.3E-10 75.1 12.9 159 12-201 52-288 (473)
362 cd01858 NGP_1 NGP-1. Autoanti 98.4 6.9E-07 1.5E-11 75.4 6.5 56 11-84 101-156 (157)
363 KOG1954|consensus 98.4 2.2E-05 4.7E-10 72.7 16.0 133 13-146 59-229 (532)
364 cd00066 G-alpha G protein alph 98.4 1.4E-05 3.1E-10 75.3 15.5 74 67-141 153-241 (317)
365 PF00448 SRP54: SRP54-type pro 98.4 2.4E-06 5.3E-11 74.6 9.5 126 13-143 2-155 (196)
366 PRK14722 flhF flagellar biosyn 98.4 3.5E-06 7.6E-11 80.3 11.2 130 12-143 137-296 (374)
367 KOG1533|consensus 98.4 2.6E-06 5.6E-11 74.0 9.1 127 13-142 3-177 (290)
368 KOG1486|consensus 98.3 1.4E-06 2.9E-11 76.4 7.1 86 11-112 61-153 (364)
369 smart00275 G_alpha G protein a 98.3 4.3E-06 9.3E-11 79.5 10.8 76 65-141 174-264 (342)
370 cd03689 RF3_II RF3_II: this su 98.3 8.6E-06 1.9E-10 60.9 10.2 75 217-297 3-84 (85)
371 cd04178 Nucleostemin_like Nucl 98.3 1.1E-06 2.4E-11 75.1 6.1 56 11-84 116-171 (172)
372 PRK10416 signal recognition pa 98.3 8.4E-06 1.8E-10 76.6 12.4 128 11-143 113-274 (318)
373 cd03115 SRP The signal recogni 98.3 1E-05 2.2E-10 69.3 12.0 125 14-143 2-154 (173)
374 cd01855 YqeH YqeH. YqeH is an 98.3 4.4E-06 9.4E-11 72.9 9.7 106 83-203 19-125 (190)
375 cd01856 YlqF YlqF. Proteins o 98.3 3.7E-06 8E-11 72.0 9.1 98 83-203 3-101 (171)
376 cd04091 mtEFG1_II_like mtEFG1_ 98.3 9.4E-06 2E-10 60.2 10.0 74 215-296 3-80 (81)
377 PRK11889 flhF flagellar biosyn 98.3 8.1E-06 1.8E-10 77.5 11.8 127 12-143 241-392 (436)
378 TIGR00064 ftsY signal recognit 98.3 6.5E-06 1.4E-10 75.7 10.9 128 10-143 70-232 (272)
379 PRK14974 cell division protein 98.2 9.5E-06 2.1E-10 76.5 11.0 127 11-143 139-294 (336)
380 PF03193 DUF258: Protein of un 98.2 1.4E-06 3.1E-11 72.8 4.7 63 13-88 36-100 (161)
381 COG3640 CooC CO dehydrogenase 98.2 6.2E-06 1.3E-10 72.0 8.2 66 73-141 132-198 (255)
382 cd01858 NGP_1 NGP-1. Autoanti 98.2 9.8E-06 2.1E-10 68.3 9.2 89 93-201 3-93 (157)
383 TIGR03596 GTPase_YlqF ribosome 98.1 1.2E-05 2.5E-10 74.5 9.2 98 83-203 5-103 (276)
384 cd03114 ArgK-like The function 98.1 1.6E-05 3.6E-10 66.2 9.0 59 73-139 90-148 (148)
385 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 4.5E-06 9.7E-11 69.1 5.5 54 14-85 85-138 (141)
386 cd01849 YlqF_related_GTPase Yl 98.1 5.3E-06 1.1E-10 69.8 6.0 57 10-84 98-154 (155)
387 PRK00771 signal recognition pa 98.1 2.6E-05 5.7E-10 76.1 11.6 128 10-143 93-247 (437)
388 cd01855 YqeH YqeH. YqeH is an 98.1 4.5E-06 9.7E-11 72.8 5.1 63 12-84 127-189 (190)
389 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 2.4E-05 5.1E-10 64.7 9.1 99 90-199 3-104 (141)
390 cd01849 YlqF_related_GTPase Yl 98.1 2.5E-05 5.5E-10 65.6 9.4 82 100-201 1-83 (155)
391 cd03112 CobW_like The function 98.1 1.4E-05 3.1E-10 67.4 7.6 65 74-140 86-158 (158)
392 PRK10867 signal recognition pa 98.1 5.9E-05 1.3E-09 73.6 12.7 127 10-142 98-254 (433)
393 TIGR00157 ribosome small subun 98.1 1.8E-05 3.9E-10 71.8 8.6 93 87-199 25-119 (245)
394 PF05783 DLIC: Dynein light in 98.0 5.1E-05 1.1E-09 74.6 12.0 61 126-202 195-263 (472)
395 cd03110 Fer4_NifH_child This p 98.0 0.00013 2.7E-09 62.9 13.0 82 73-163 91-172 (179)
396 cd01851 GBP Guanylate-binding 98.0 2E-05 4.2E-10 70.6 8.0 90 9-110 4-103 (224)
397 KOG0780|consensus 98.0 2.3E-05 4.9E-10 73.0 8.4 127 12-141 101-253 (483)
398 PRK09563 rbgA GTPase YlqF; Rev 98.0 2.1E-05 4.5E-10 73.2 8.4 99 82-203 7-106 (287)
399 PRK06731 flhF flagellar biosyn 98.0 7.6E-05 1.6E-09 68.3 11.7 128 11-143 74-226 (270)
400 PRK09563 rbgA GTPase YlqF; Rev 98.0 1.3E-05 2.9E-10 74.5 6.9 58 10-85 119-176 (287)
401 cd01856 YlqF YlqF. Proteins o 98.0 1.4E-05 3.1E-10 68.3 6.5 57 11-85 114-170 (171)
402 TIGR03596 GTPase_YlqF ribosome 98.0 1.2E-05 2.6E-10 74.4 6.2 57 11-85 117-173 (276)
403 PRK12288 GTPase RsgA; Reviewed 98.0 7.6E-06 1.7E-10 77.8 5.0 64 14-88 207-270 (347)
404 cd03700 eEF2_snRNP_like_II EF2 98.0 9.5E-05 2.1E-09 56.3 10.1 78 215-296 3-92 (93)
405 PRK12289 GTPase RsgA; Reviewed 98.0 5.9E-05 1.3E-09 71.8 10.7 83 96-199 87-171 (352)
406 PRK12727 flagellar biosynthesi 98.0 7E-05 1.5E-09 74.0 11.1 129 11-143 349-499 (559)
407 COG1162 Predicted GTPases [Gen 97.9 8E-06 1.7E-10 74.6 4.2 64 14-88 166-229 (301)
408 PF02492 cobW: CobW/HypB/UreG, 97.9 3.2E-05 6.8E-10 66.7 7.8 69 74-144 84-157 (178)
409 TIGR03597 GTPase_YqeH ribosome 97.9 5.7E-05 1.2E-09 72.5 10.3 102 85-201 50-151 (360)
410 PRK12726 flagellar biosynthesi 97.9 7.1E-05 1.5E-09 71.0 10.5 128 11-143 205-357 (407)
411 PRK14721 flhF flagellar biosyn 97.9 5.8E-05 1.3E-09 73.2 10.2 129 12-143 191-341 (420)
412 COG0541 Ffh Signal recognition 97.9 5.4E-05 1.2E-09 72.1 9.3 130 9-143 97-254 (451)
413 TIGR00157 ribosome small subun 97.9 1.3E-05 2.8E-10 72.7 5.1 64 13-88 121-184 (245)
414 KOG4423|consensus 97.9 2.6E-06 5.5E-11 71.2 0.3 156 12-200 25-191 (229)
415 KOG0082|consensus 97.9 0.00015 3.1E-09 68.1 11.8 84 58-142 178-276 (354)
416 TIGR00959 ffh signal recogniti 97.9 0.00012 2.7E-09 71.3 11.4 126 11-142 98-253 (428)
417 cd02036 MinD Bacterial cell di 97.9 0.00014 3E-09 62.5 10.4 122 17-142 5-128 (179)
418 COG1161 Predicted GTPases [Gen 97.8 2.7E-05 5.8E-10 73.5 5.9 57 10-84 130-186 (322)
419 PRK12724 flagellar biosynthesi 97.8 6.7E-05 1.5E-09 72.2 8.4 127 12-143 223-374 (432)
420 TIGR00092 GTP-binding protein 97.8 5.4E-05 1.2E-09 71.8 7.6 82 13-110 3-109 (368)
421 PRK12723 flagellar biosynthesi 97.8 0.00023 5E-09 68.5 11.9 129 12-143 174-327 (388)
422 cd04090 eEF2_II_snRNP Loc2 eEF 97.8 0.00025 5.4E-09 54.1 9.9 65 215-279 3-79 (94)
423 PRK12289 GTPase RsgA; Reviewed 97.8 2.2E-05 4.8E-10 74.7 4.9 64 14-88 174-237 (352)
424 TIGR00487 IF-2 translation ini 97.8 0.0011 2.5E-08 67.5 17.4 183 80-296 392-575 (587)
425 COG1419 FlhF Flagellar GTP-bin 97.8 0.00013 2.7E-09 69.4 9.6 130 11-143 202-353 (407)
426 PRK00098 GTPase RsgA; Reviewed 97.8 0.00015 3.3E-09 67.8 10.1 83 96-198 78-162 (298)
427 PRK05306 infB translation init 97.8 0.0017 3.6E-08 68.1 18.6 183 80-296 594-777 (787)
428 KOG3887|consensus 97.8 7.8E-05 1.7E-09 65.2 7.1 151 13-178 28-188 (347)
429 PRK05703 flhF flagellar biosyn 97.8 0.00018 3.9E-09 70.4 10.5 127 13-143 222-372 (424)
430 cd01859 MJ1464 MJ1464. This f 97.8 5.7E-05 1.2E-09 63.5 6.1 25 11-35 100-124 (156)
431 PF09173 eIF2_C: Initiation fa 97.8 0.00059 1.3E-08 50.6 10.5 78 305-391 2-88 (88)
432 PRK06995 flhF flagellar biosyn 97.7 0.00019 4.1E-09 70.8 10.2 128 13-143 257-406 (484)
433 cd01854 YjeQ_engC YjeQ/EngC. 97.7 4E-05 8.7E-10 71.2 5.1 65 13-88 162-226 (287)
434 CHL00189 infB translation init 97.7 0.0023 5E-08 66.5 18.1 182 80-296 549-731 (742)
435 cd01854 YjeQ_engC YjeQ/EngC. 97.7 0.00024 5.2E-09 66.1 10.0 82 96-198 76-159 (287)
436 COG0523 Putative GTPases (G3E 97.7 0.00037 8E-09 65.4 11.3 151 15-176 4-185 (323)
437 KOG1487|consensus 97.7 0.0001 2.2E-09 65.1 7.0 84 13-112 60-150 (358)
438 KOG1491|consensus 97.7 0.0001 2.2E-09 67.7 6.9 86 9-110 17-126 (391)
439 PRK13796 GTPase YqeH; Provisio 97.7 4.9E-05 1.1E-09 73.1 5.1 61 12-85 160-220 (365)
440 KOG0447|consensus 97.7 0.0015 3.3E-08 63.6 14.8 134 6-143 302-494 (980)
441 KOG2485|consensus 97.7 0.00012 2.7E-09 66.6 7.0 65 10-84 141-205 (335)
442 TIGR03597 GTPase_YqeH ribosome 97.7 6.2E-05 1.3E-09 72.3 5.4 61 13-86 155-215 (360)
443 PRK13796 GTPase YqeH; Provisio 97.6 0.00044 9.6E-09 66.5 11.0 99 87-201 58-157 (365)
444 cd02038 FleN-like FleN is a me 97.6 0.0008 1.7E-08 55.4 11.0 105 17-141 5-110 (139)
445 cd03111 CpaE_like This protein 97.6 0.00053 1.1E-08 53.6 9.4 96 19-137 7-106 (106)
446 PRK14723 flhF flagellar biosyn 97.6 0.00016 3.5E-09 74.6 8.0 126 13-142 186-337 (767)
447 cd03703 aeIF5B_II aeIF5B_II: T 97.6 0.001 2.2E-08 51.6 10.0 80 215-296 3-93 (110)
448 PRK12288 GTPase RsgA; Reviewed 97.5 0.00083 1.8E-08 64.0 11.3 87 96-200 118-205 (347)
449 PRK01889 GTPase RsgA; Reviewed 97.5 0.00069 1.5E-08 65.0 10.4 82 96-198 110-192 (356)
450 COG0532 InfB Translation initi 97.5 0.0089 1.9E-07 58.7 17.7 104 190-296 392-496 (509)
451 PRK11537 putative GTP-binding 97.4 0.0012 2.5E-08 62.3 10.8 88 75-174 91-186 (318)
452 cd02037 MRP-like MRP (Multiple 97.4 0.00074 1.6E-08 57.6 7.8 67 73-141 66-134 (169)
453 PRK00098 GTPase RsgA; Reviewed 97.4 0.0002 4.4E-09 66.9 4.6 24 13-36 165-188 (298)
454 cd02042 ParA ParA and ParB of 97.4 0.0022 4.9E-08 49.7 9.8 73 15-112 2-75 (104)
455 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.0019 4E-08 48.9 9.2 71 15-113 2-73 (99)
456 COG1162 Predicted GTPases [Gen 97.3 0.0024 5.2E-08 58.7 10.8 83 98-199 79-163 (301)
457 PF09547 Spore_IV_A: Stage IV 97.3 0.0064 1.4E-07 58.1 13.8 158 8-177 13-219 (492)
458 PRK13695 putative NTPase; Prov 97.3 0.0013 2.9E-08 56.3 8.7 120 13-138 1-136 (174)
459 TIGR03348 VI_IcmF type VI secr 97.3 0.0014 3E-08 72.5 10.4 120 15-150 114-266 (1169)
460 TIGR02475 CobW cobalamin biosy 97.2 0.0034 7.4E-08 59.8 11.4 22 14-35 6-27 (341)
461 COG0552 FtsY Signal recognitio 97.2 0.0024 5.2E-08 59.2 9.9 129 10-142 137-298 (340)
462 PHA02518 ParA-like protein; Pr 97.2 0.0069 1.5E-07 53.4 12.7 67 73-141 75-146 (211)
463 KOG4181|consensus 97.2 0.0073 1.6E-07 55.9 12.1 142 12-161 188-376 (491)
464 KOG3859|consensus 97.1 0.0041 9E-08 55.8 9.3 137 11-162 41-209 (406)
465 cd03702 IF2_mtIF2_II This fami 97.1 0.0066 1.4E-07 46.1 9.3 74 215-296 3-78 (95)
466 PF01656 CbiA: CobQ/CobB/MinD/ 97.0 0.0022 4.7E-08 55.7 6.8 69 74-144 94-164 (195)
467 KOG2743|consensus 96.9 0.01 2.2E-07 53.9 10.6 23 13-35 58-80 (391)
468 KOG2484|consensus 96.8 0.001 2.2E-08 62.5 3.6 58 10-85 250-307 (435)
469 KOG1707|consensus 96.7 0.016 3.5E-07 57.3 11.2 132 9-164 422-559 (625)
470 cd04178 Nucleostemin_like Nucl 96.7 0.0038 8.2E-08 53.3 5.8 45 100-145 1-47 (172)
471 TIGR00491 aIF-2 translation in 96.7 0.015 3.2E-07 59.4 10.9 77 219-298 473-550 (590)
472 KOG0781|consensus 96.7 0.0038 8.3E-08 60.1 6.1 133 9-143 375-545 (587)
473 CHL00175 minD septum-site dete 96.6 0.029 6.3E-07 52.0 12.0 66 74-141 126-191 (281)
474 PRK10751 molybdopterin-guanine 96.6 0.012 2.6E-07 50.1 8.1 25 12-36 6-30 (173)
475 PRK14491 putative bifunctional 96.6 0.28 6.1E-06 50.4 19.5 29 12-40 10-38 (597)
476 COG1341 Predicted GTPase or GT 96.5 0.0064 1.4E-07 57.8 6.8 31 10-40 71-101 (398)
477 PRK13849 putative crown gall t 96.5 0.02 4.3E-07 51.4 9.7 64 73-139 82-151 (231)
478 COG1618 Predicted nucleotide k 96.5 0.059 1.3E-06 44.8 11.4 30 10-39 3-32 (179)
479 KOG2423|consensus 96.5 0.0011 2.4E-08 62.2 1.5 28 9-36 304-331 (572)
480 cd03701 IF2_IF5B_II IF2_IF5B_I 96.5 0.019 4.2E-07 43.7 7.9 61 215-279 3-64 (95)
481 PRK04004 translation initiatio 96.5 0.023 5E-07 58.1 10.9 76 219-297 475-551 (586)
482 PRK08099 bifunctional DNA-bind 96.5 0.022 4.8E-07 55.4 10.3 24 12-35 219-242 (399)
483 PRK01889 GTPase RsgA; Reviewed 96.3 0.0039 8.5E-08 59.8 4.2 25 13-37 196-220 (356)
484 PF13555 AAA_29: P-loop contai 96.3 0.0046 1E-07 42.8 3.2 23 14-36 25-47 (62)
485 PF06858 NOG1: Nucleolar GTP-b 96.2 0.02 4.3E-07 38.7 5.7 48 91-139 5-58 (58)
486 cd03116 MobB Molybdenum is an 96.2 0.02 4.4E-07 48.1 7.3 24 14-37 3-26 (159)
487 KOG1424|consensus 96.1 0.0064 1.4E-07 59.2 4.4 26 10-35 312-337 (562)
488 cd02032 Bchl_like This family 96.1 0.095 2.1E-06 48.1 11.8 66 74-140 115-184 (267)
489 smart00010 small_GTPase Small 96.0 0.019 4E-07 45.6 6.3 22 13-34 1-22 (124)
490 PHA00729 NTP-binding motif con 96.0 0.015 3.3E-07 51.5 6.0 26 11-36 16-41 (226)
491 PF13207 AAA_17: AAA domain; P 96.0 0.0075 1.6E-07 48.0 3.7 22 14-35 1-22 (121)
492 TIGR03499 FlhF flagellar biosy 96.0 0.0094 2E-07 55.3 4.8 28 12-39 194-221 (282)
493 COG1763 MobB Molybdopterin-gua 96.0 0.036 7.7E-07 46.5 7.6 27 13-39 3-29 (161)
494 COG4559 ABC-type hemin transpo 95.9 0.0056 1.2E-07 53.1 2.7 25 13-37 28-52 (259)
495 cd02117 NifH_like This family 95.9 0.086 1.9E-06 46.6 10.5 68 73-141 115-188 (212)
496 PF07015 VirC1: VirC1 protein; 95.9 0.057 1.2E-06 47.9 9.0 65 73-140 82-152 (231)
497 PF03205 MobB: Molybdopterin g 95.8 0.011 2.3E-07 48.7 4.0 26 14-39 2-27 (140)
498 cd00550 ArsA_ATPase Oxyanion-t 95.8 0.26 5.5E-06 45.0 13.4 69 73-141 123-202 (254)
499 COG0563 Adk Adenylate kinase a 95.8 0.0085 1.8E-07 51.4 3.3 23 13-35 1-23 (178)
500 cd02019 NK Nucleoside/nucleoti 95.8 0.01 2.2E-07 42.3 3.2 21 15-35 2-22 (69)
No 1
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-85 Score=568.57 Aligned_cols=394 Identities=81% Similarity=1.245 Sum_probs=380.7
Q ss_pred CCcccccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEE
Q psy15217 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHV 80 (396)
Q Consensus 1 ~~~~~~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ii 80 (396)
|++.++.+.|++.||+.+||+|||||||..+|+..+.+.+...+..|...|..++|++||+||+.++..|++++++|..+
T Consensus 1 mak~kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahV 80 (394)
T COG0050 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHV 80 (394)
T ss_pred CchhhhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEec
Confidence 88999999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred ecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 81 DtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
|+|||.+|++||+.++.++|++||||+|.+|.++||+||+.++++.|+|.++|++||+|+++..+..+.+..+++++|..
T Consensus 81 DcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred cCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEe
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVR 240 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~ 240 (396)
++|++.+.|++..||+...++...|. ..+.+|++++++++|.|.++.++||+|+|.++|.+.|+|+|++|+|+.|+|+
T Consensus 161 y~f~gd~~Pii~gSal~ale~~~~~~--~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lk 238 (394)
T COG0050 161 YGFPGDDTPIIRGSALKALEGDAKWE--AKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILK 238 (394)
T ss_pred cCCCCCCcceeechhhhhhcCCcchH--HHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeec
Confidence 99999999999999998888888886 4799999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCCCceeEEEEEEEEeecCCCC
Q psy15217 241 VGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGG 320 (396)
Q Consensus 241 ~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~ 320 (396)
+|+.+.+.+.+...+++|.+++++++..+++.|||+|++.|+++.+.++.||++|+.|++..+.+.|+|++++|...+++
T Consensus 239 vg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgsi~ph~kfeaevyvL~keegg 318 (394)
T COG0050 239 VGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKPHTKFEAEVYVLSKEEGG 318 (394)
T ss_pred cCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEeecCCcccccceeeEEEEEEecccCC
Confidence 99999998777678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCceeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEEEeCCcEEEEEEEeeecC
Q psy15217 321 RHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 321 ~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~~~t~~~G~i~~v~~ 396 (396)
||+|+..||+|.+|+++.++++.+.+.++.+.+.+||++.+.++|.+|+++++|.||.+|++|+|+|.|.|++|.+
T Consensus 319 rhtpff~~yrpqfyfRttDVtg~i~l~eg~emvmpgdnv~~~veLi~pia~e~G~rFaIreGgrtvgaGvV~~i~~ 394 (394)
T COG0050 319 RHTPFFHGYRPQFYFRTTDVTGAITLPEGVEMVMPGDNVKMVVELIHPIAMEEGLRFAIREGGRTVGAGVVTKIIE 394 (394)
T ss_pred CCCCcccCccceeEEEeeeeeeeEeccCCcceecCCCceEEEEEEeeeeecCCCCEEEEEeCCeeeeeeEEeeecC
Confidence 9999999999999999999999999889989999999999999999999999999999999999999999999864
No 2
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-82 Score=580.29 Aligned_cols=378 Identities=35% Similarity=0.555 Sum_probs=345.1
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhh---------------hhcCCccccccccCCChhHhhcCceEEeeeeEEee
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 72 (396)
..|+++|++++||+|||||||+|+|+.... +.+++++...|.||++++||+||+|++.++..|++
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 468999999999999999999999985431 24456667789999999999999999999999999
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCC-------CChhHHHHHHHHHHcCCCeEEEEEeccCCCCH-H
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-------PMPQTREHILLARQVGVPYIVVFLNKADMVDD-E 144 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g-------~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~ 144 (396)
+.+.++|+|||||++|.++|+.|+++||+++|||||+.+ ..+||+||+.+++.+|+.++||++||||+++| +
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 999999999999999999999999999999999999997 78999999999999999999999999999998 5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCeEEEeccccccc-----CCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEE
Q psy15217 145 ELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALE-----GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVED 219 (396)
Q Consensus 145 ~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~-----~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~ 219 (396)
++|++++.++..+++.+++++++++|+|+||+.|.| ...+||.++ +|+++|+ .+..|.++.++||+++|++
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~Gp---TLleaLd-~~~~p~~~~d~Plr~pI~~ 238 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGP---TLLEALD-QLEPPERPLDKPLRLPIQD 238 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCC---hHHHHHh-ccCCCCCCCCCCeEeEeee
Confidence 789999999999999999988889999999999987 346899876 6777777 4778889999999999999
Q ss_pred EEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCC
Q psy15217 220 VFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (396)
Q Consensus 220 ~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (396)
+|.+.+.|+++.|+|++|.|++||+|++.|.+ ....|+||++++++.+.|.|||+|+++++++...+|++|+++++++
T Consensus 239 v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~--~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~ 316 (428)
T COG5256 239 VYSISGIGTVPVGRVESGVIKPGQKVTFMPAG--VVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSD 316 (428)
T ss_pred EEEecCCceEEEEEEeeeeeccCCEEEEecCc--ceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCC
Confidence 99999999999999999999999999999854 7789999999999999999999999999999999999999999998
Q ss_pred CCCc-eeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEE-------------ccCCcccccCCCEEEEEEEe
Q psy15217 300 SIKP-HKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIE-------------LPKNKEMVMPGDNVLITVRL 365 (396)
Q Consensus 300 ~~~~-~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~-------------~~~~~~~l~~g~~~~v~~~~ 365 (396)
+++. +..|.|++.++.|+ +.|.+||+|++|+|+..++|++. ..+++.++++|+.+.|.+++
T Consensus 317 n~~t~s~~f~a~i~vl~~p-----~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~ 391 (428)
T COG5256 317 NPPTVSPEFTAQIIVLWHP-----GIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEP 391 (428)
T ss_pred CCcccccceEEEEEEEecC-----ccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEe
Confidence 7655 46999999999997 68999999999999999999872 23457899999999999999
Q ss_pred cceeecccC------CeEEEEeCCcEEEEEEEeeecC
Q psy15217 366 INPIAMEEG------LRFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 366 ~~p~~~~~~------~r~~lr~~~~t~~~G~i~~v~~ 396 (396)
.+|+|++.. +||++||.|+|||+|+|.++.+
T Consensus 392 ~kP~~~e~~~~~~~Lgrfalrd~g~tIA~G~v~~v~~ 428 (428)
T COG5256 392 EKPLCLEKVSEIPQLGRFALRDMGQTIAAGKVLEVKK 428 (428)
T ss_pred cCceEeeecccCCccceEEEEeCCCeEEeEEEEeccC
Confidence 999999853 6999999999999999998753
No 3
>KOG0460|consensus
Probab=100.00 E-value=1e-82 Score=565.22 Aligned_cols=393 Identities=67% Similarity=1.099 Sum_probs=377.5
Q ss_pred ccccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecC
Q psy15217 4 SKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCP 83 (396)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtp 83 (396)
..+.++||+.||+.+||+|||||||..+++....+.+...+..|...|+.++|+.||+||+.++..|++..++|.-+|||
T Consensus 46 ~~f~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCP 125 (449)
T KOG0460|consen 46 AVFVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCP 125 (449)
T ss_pred cccccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 84 G~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
||.+|++||+.|+++.|++||||+|++|.++||+||+.++++.|+++++|.+||.|+++.++..+.++.+++++|..++|
T Consensus 126 GHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 126 GHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred chHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999997778889999999999999999
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGE 243 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~ 243 (396)
+++++|+|..||+...++.++-...+.+..|++++++++|.|.|+.++||.|+|.++|.++|+|+|++|+++.|.|++||
T Consensus 206 ~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~ 285 (449)
T KOG0460|consen 206 DGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGD 285 (449)
T ss_pred CCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCC
Confidence 99999999999999888777766667899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCCCceeEEEEEEEEeecCCCCCCc
Q psy15217 244 ELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHT 323 (396)
Q Consensus 244 ~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~ 323 (396)
++.+.+.++..+.+|.+|+++++.+++|.|||++++-|+|+++.+++|||+++.|+...+.+.|+|.+++|+..+++|++
T Consensus 286 e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGsvk~~~k~ea~~YiLsk~EGGR~~ 365 (449)
T KOG0460|consen 286 EVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGSVKPHNKFEAQLYILSKEEGGRHK 365 (449)
T ss_pred EEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEEecCCcccccceeeEEEEEEEhhhCCCcc
Confidence 99999877888999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred ccccCceeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEEEeCCcEEEEEEEeeecC
Q psy15217 324 PFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 324 ~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~~~t~~~G~i~~v~~ 396 (396)
|+..+|+|.+|+.|.++++++.++...+++.+||.+.+++.|.+|++++.|+||.+|++|+|+|.|.|+++++
T Consensus 366 pf~s~y~~q~fs~TwD~~~~v~~~~~~~mvMPGe~~~~~~~Li~pm~le~GqrFtiReGg~TvgtGvvt~~l~ 438 (449)
T KOG0460|consen 366 PFVSGYRPQMFSRTWDVTGRVDIPPEKEMVMPGENVKVEVTLIRPMPLEKGQRFTLREGGRTVGTGVVTDTLP 438 (449)
T ss_pred chhhccchhheeeecccceEEEccChHhcccCCCCeEEEEEEecccccCCCceeeEccCCeeeeeeeEeeeee
Confidence 9999999999999999999999887788999999999999999999999999999999999999999998763
No 4
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.6e-78 Score=583.11 Aligned_cols=394 Identities=76% Similarity=1.222 Sum_probs=362.8
Q ss_pred CCcccccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEE
Q psy15217 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHV 80 (396)
Q Consensus 1 ~~~~~~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ii 80 (396)
|++.++...++++||+++||+|||||||+++|++...+.+++....++.+|.+++|+++|+|++.....|+.+++.++|+
T Consensus 1 ~~~~~~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~i 80 (394)
T PRK12736 1 MAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHV 80 (394)
T ss_pred CchhhhccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEE
Confidence 78889999999999999999999999999999987666655555555679999999999999999999998888999999
Q ss_pred ecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 81 DtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
|||||++|++++..++..+|++++|+|+.+|..+||++|+.++..+++|++||++||||+++.++.++.+.+++.++++.
T Consensus 81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~ 160 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899999987666777777789999999
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEe
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVR 240 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~ 240 (396)
+++..+.+|++++||++|.++...||. ++.+|++++.+.+|.|.++.++||+|+|+++|++++.|+|++|+|++|.|+
T Consensus 161 ~~~~~~~~~ii~vSa~~g~~~~~~~~~--~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~ 238 (394)
T PRK12736 161 YDFPGDDIPVIRGSALKALEGDPKWED--AIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVK 238 (394)
T ss_pred hCCCcCCccEEEeeccccccCCCcchh--hHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEe
Confidence 988766789999999999877788984 789999999999998888889999999999999999999999999999999
Q ss_pred cCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCCCceeEEEEEEEEeecCCCC
Q psy15217 241 VGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGG 320 (396)
Q Consensus 241 ~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~ 320 (396)
+||.|+++|.+.+.+++|+||+++++++++|.|||+|+++|++++..++++|++||+++++++++.|+|++.+|+++.++
T Consensus 239 ~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~vl~~~~~~ 318 (394)
T PRK12736 239 VGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPGSIKPHTKFKAEVYILTKEEGG 318 (394)
T ss_pred cCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEecCCCCCcceEEEEEEEEEecccCC
Confidence 99999999865467799999999999999999999999999999889999999999987777789999999999986555
Q ss_pred CCcccccCceeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEEEeCCcEEEEEEEeeecC
Q psy15217 321 RHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 321 ~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~~~t~~~G~i~~v~~ 396 (396)
++++|.+||++++|+|+.++.|++...+++.++++||.+.|+|+|++|+|+++++||+||++|+|+|+|.|+++++
T Consensus 319 ~~~~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~~g~tv~~G~V~~v~~ 394 (394)
T PRK12736 319 RHTPFFNNYRPQFYFRTTDVTGSIELPEGTEMVMPGDNVTITVELIHPIAMEQGLKFAIREGGRTVGAGTVTEILD 394 (394)
T ss_pred CCCcccCCceEEEEEccCeEEEEEEecCCcceeCCCCEEEEEEEECceEEEeeCCEEEEecCCcEEEEEEEEEeeC
Confidence 5679999999999999999999998777888999999999999999999999999999999999999999999864
No 5
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=9.8e-78 Score=580.48 Aligned_cols=394 Identities=82% Similarity=1.268 Sum_probs=360.8
Q ss_pred CCcccccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEE
Q psy15217 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHV 80 (396)
Q Consensus 1 ~~~~~~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ii 80 (396)
|+++.|.+++++++|+++||+|||||||+++|++.....+......++.+|.+++|+++|+|++.....++.++..++|+
T Consensus 1 ~~~~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~i 80 (396)
T PRK12735 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHV 80 (396)
T ss_pred CchhhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEE
Confidence 88999999999999999999999999999999987666655555555679999999999999999999998888899999
Q ss_pred ecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 81 DtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
|||||++|.++|..++..+|++++|+|+.+|..+|+++|+.++..+++|++||++||||+.+.++.++.+..+++.+++.
T Consensus 81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~ 160 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877889999987666677777789999999
Q ss_pred cCCCCCCCeEEEecccccccCC--CCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeE
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGD--TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGI 238 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~--~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~ 238 (396)
+++.+++.|++++||++++|.. ..|| .++.+|+++|.+.+|.|.+..++||+|+|+++|+++|.|+|++|+|++|.
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n~~~~~~w~--~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~ 238 (396)
T PRK12735 161 YDFPGDDTPIIRGSALKALEGDDDEEWE--AKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGI 238 (396)
T ss_pred cCCCcCceeEEecchhccccCCCCCccc--ccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecE
Confidence 8886667899999999998754 4576 47899999999988888888899999999999999999999999999999
Q ss_pred EecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCCCceeEEEEEEEEeecCC
Q psy15217 239 VRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDE 318 (396)
Q Consensus 239 l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~ 318 (396)
+++||+|+++|.+.+.+++|++|+++++++++|.|||+|+++|++++..++++|+|||+++++++++.|+|++.+|+++.
T Consensus 239 i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~~~~~~~~f~a~i~vl~~~~ 318 (396)
T PRK12735 239 VKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGSIKPHTKFEAEVYVLSKEE 318 (396)
T ss_pred EeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCCCCCcceEEEEEEEEEeccc
Confidence 99999999998655678999999999999999999999999999999999999999999877777899999999999864
Q ss_pred CCCCcccccCceeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEEEeCCcEEEEEEEeeecC
Q psy15217 319 GGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 319 ~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~~~t~~~G~i~~v~~ 396 (396)
++++++|.+||++++|+|+.++.|++...+++.+|++||.+.|+|+|++|+|+++++||+||++|+|+|+|.|+++.|
T Consensus 319 ~~~~~~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~~g~tv~~G~V~~v~~ 396 (396)
T PRK12735 319 GGRHTPFFNGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNVKMTVELIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396 (396)
T ss_pred CCCCCcccCCCeeEEEeccceEEEEEEccCCCceeCCCCEEEEEEEECceEEEeECCEEEEEcCCcEEEEEEEEEecC
Confidence 445578999999999999999999998777888999999999999999999999999999999999999999999875
No 6
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1e-77 Score=581.03 Aligned_cols=394 Identities=79% Similarity=1.235 Sum_probs=363.0
Q ss_pred CCcccccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEE
Q psy15217 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHV 80 (396)
Q Consensus 1 ~~~~~~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ii 80 (396)
|++..+++.+++++|+++||+|||||||+++|++.....+......++.+|.+++|+++|+|++.....++.+++.++||
T Consensus 1 ~~~~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~li 80 (394)
T TIGR00485 1 MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHV 80 (394)
T ss_pred CchhhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEE
Confidence 88888999999999999999999999999999987666666666656779999999999999999999998888899999
Q ss_pred ecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 81 DtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
|||||++|.++|..++..+|++++|+|+.+|..+||++|+.++..+++|++|+++||||+.++++.++.+.++++++++.
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~ 160 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998887899999998766677777789999999
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEe
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVR 240 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~ 240 (396)
+++.+.++|++++||+++.++.+.||. ++.+|+++|.+.+|.|.++.++||+|+|+++|+++|.|+|++|+|.+|.|+
T Consensus 161 ~~~~~~~~~ii~vSa~~g~~g~~~~~~--~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~ 238 (394)
T TIGR00485 161 YDFPGDDTPIIRGSALKALEGDAEWEA--KILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVK 238 (394)
T ss_pred cCCCccCccEEECccccccccCCchhH--hHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEe
Confidence 888666689999999999878889984 678999999988888888889999999999999999999999999999999
Q ss_pred cCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCCCceeEEEEEEEEeecCCCC
Q psy15217 241 VGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGG 320 (396)
Q Consensus 241 ~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~ 320 (396)
+||.|.+.|.+++.+++|++|++++.++++|.|||+|+++|++++..++++|++|++++++++++.|+|++.||+++.++
T Consensus 239 ~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~~~~~~~~f~a~i~vl~~~~g~ 318 (394)
T TIGR00485 239 VGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPGSIKPHTKFEAEVYVLKKEEGG 318 (394)
T ss_pred CCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEecCCCCCcceEEEEEEEEEecCCCC
Confidence 99999998854456789999999999999999999999999999888999999999987777789999999999986556
Q ss_pred CCcccccCceeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEEEeCCcEEEEEEEeeecC
Q psy15217 321 RHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 321 ~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~~~t~~~G~i~~v~~ 396 (396)
++++|..||++++|+|+.++.|++...+++.+|++|+.+.|+|+|++|+|+++++||+||++|+|+|+|.|++++|
T Consensus 319 ~~~~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~~~~~~p~~~~~~~rfilR~~g~tv~~G~V~~v~~ 394 (394)
T TIGR00485 319 RHTPFFSGYRPQFYFRTTDVTGSITLPEGVEMVMPGDNVKMTVELISPIALEQGMRFAIREGGRTVGAGVVSKIIE 394 (394)
T ss_pred CCCccccCceEEEEEecceEEEEEEecCCcceeCCCCEEEEEEEECceEEEeECCEEEEecCCcEEEEEEEEEecC
Confidence 6689999999999999999999998778888999999999999999999999999999999899999999999875
No 7
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.5e-77 Score=576.15 Aligned_cols=394 Identities=82% Similarity=1.257 Sum_probs=361.4
Q ss_pred CCcccccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEE
Q psy15217 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHV 80 (396)
Q Consensus 1 ~~~~~~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ii 80 (396)
|+++.|.+.++++||+++||+|||||||+++|++...+.++.....++.+|.+++|+++|+|++.....++.+++.++|+
T Consensus 1 ~~~~~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~i 80 (396)
T PRK00049 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHV 80 (396)
T ss_pred CchhhccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEE
Confidence 78899999999999999999999999999999987766666555555679999999999999999999998888999999
Q ss_pred ecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 81 DtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
|||||.+|.+++..++..+|++++|+|+.+|..+|+++|+.++..+++|.+||++||+|+.+.++.++.+..+++.+++.
T Consensus 81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~ 160 (396)
T PRK00049 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998877889999987666677777789999999
Q ss_pred cCCCCCCCeEEEecccccccC--CCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeE
Q psy15217 161 YEFPGNDIPIIKGSAKLALEG--DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGI 238 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~--~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~ 238 (396)
+++++.++|++++||+++.+. ..+||. ++.+|+++|.+.+|.|.+..++||+|+|+++|+++|.|+|++|+|.+|.
T Consensus 161 ~~~~~~~~~iv~iSa~~g~~~~~~~~w~~--~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~ 238 (396)
T PRK00049 161 YDFPGDDTPIIRGSALKALEGDDDEEWEK--KILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGI 238 (396)
T ss_pred cCCCccCCcEEEeecccccCCCCcccccc--cHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeE
Confidence 988767799999999998753 457985 6889999999988888888899999999999999999999999999999
Q ss_pred EecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCCCceeEEEEEEEEeecCC
Q psy15217 239 VRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDE 318 (396)
Q Consensus 239 l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~ 318 (396)
+++||+|.++|.+.+..++|+||+++++++++|.|||+|+++|++++..++++|++||+++++++++.|+|++.+|+++.
T Consensus 239 i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~vl~~~~ 318 (396)
T PRK00049 239 IKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPGSITPHTKFEAEVYVLSKEE 318 (396)
T ss_pred EecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCCCCCcceEEEEEEEEEecCc
Confidence 99999999998654678999999999999999999999999999998899999999999877777899999999999864
Q ss_pred CCCCcccccCceeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEEEeCCcEEEEEEEeeecC
Q psy15217 319 GGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 319 ~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~~~t~~~G~i~~v~~ 396 (396)
++++++|.+||++++|+++.++.|++.+.+++.++++||.+.|+|+|.+|+|+++++||+||++|+|+|+|.|+++.|
T Consensus 319 ~g~~~~i~~g~~~~~~~~t~~~~~~i~l~~~~~~l~~g~~a~v~i~~~~p~~~e~~~RfilR~~g~t~~~G~V~~v~~ 396 (396)
T PRK00049 319 GGRHTPFFNGYRPQFYFRTTDVTGVIELPEGVEMVMPGDNVEMTVELIAPIAMEEGLRFAIREGGRTVGAGVVTKIIE 396 (396)
T ss_pred CCCCCcccCCCEEEEEEecCcEEEEEEecCCCcccCCCCEEEEEEEECceEEEeeCCEEEEecCCcEEEEEEEEEecC
Confidence 445679999999999999999999998777889999999999999999999999999999999999999999999875
No 8
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=6.9e-77 Score=578.32 Aligned_cols=393 Identities=71% Similarity=1.153 Sum_probs=353.9
Q ss_pred ccccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecC
Q psy15217 4 SKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCP 83 (396)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtp 83 (396)
.++...++++||+++||+|||||||+++|++...+.+......+..+|..++|+++|+|++.....|+++++.++|+|||
T Consensus 53 ~~~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtP 132 (447)
T PLN03127 53 ATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCP 132 (447)
T ss_pred hhhhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECC
Confidence 45667899999999999999999999999876544444433334469999999999999999999999999999999999
Q ss_pred ChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 84 G~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
||++|+++|..++..+|+++||||+.+|..+|+++|+.++..+++|++|+++||||++++++.++.+..++.++++.+++
T Consensus 133 Gh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 133 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred CccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999998887899999997666677777788899988888
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGE 243 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~ 243 (396)
+...+|++|+||+.+.++.+.+....++.+|++++.+.+|.|.+..++||+|+|+++|+++|.|+|++|+|++|.+++||
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd 292 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 292 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCC
Confidence 76789999999987655554443345689999999998988888889999999999999999999999999999999999
Q ss_pred EEEEeecCC--ceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCCCceeEEEEEEEEeecCCCCC
Q psy15217 244 ELEIIGIKD--TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGR 321 (396)
Q Consensus 244 ~v~~~p~~~--~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~ 321 (396)
+|.+.|.++ +.+++|+||+++++++++|.|||+|+++|++++..++++|||||+++.+.++++|+|++.+|+++.+++
T Consensus 293 ~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~~~~~~~~F~A~i~vl~~~~gg~ 372 (447)
T PLN03127 293 EVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVICKPGSIKTYKKFEAEIYVLTKDEGGR 372 (447)
T ss_pred EEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCCCCceeEEEEEEEEEEccccccc
Confidence 999987543 468999999999999999999999999999999999999999999877777899999999999976666
Q ss_pred CcccccCceeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEEEeCCcEEEEEEEeeecC
Q psy15217 322 HTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 322 ~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~~~t~~~G~i~~v~~ 396 (396)
+++|.+||+|++|+|+.+++|++...+++.++++||.+.|+|+|.+|+|+++++||+||++|+|+|+|.|++|.+
T Consensus 373 ~~~i~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~gd~a~v~l~~~~p~~le~g~RfilR~~g~Tvg~G~V~~v~~ 447 (447)
T PLN03127 373 HTPFFSNYRPQFYLRTADVTGKVELPEGVKMVMPGDNVTAVFELISPVPLEPGQRFALREGGRTVGAGVVSKVLS 447 (447)
T ss_pred CcccccCceeEEEeeecceeEEEEeccCccccCCCCEEEEEEEECceEEEeeCCEEEEEeCCcEEEEEEEEEecC
Confidence 789999999999999999999998778889999999999999999999999999999999999999999999864
No 9
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=8.1e-76 Score=573.16 Aligned_cols=389 Identities=69% Similarity=1.122 Sum_probs=352.5
Q ss_pred ccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh
Q psy15217 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (396)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~ 85 (396)
++..++++||+++||+|+|||||+++|+.............+..+|..++|+++|+|++.....|+++++.++|||||||
T Consensus 75 ~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh 154 (478)
T PLN03126 75 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 154 (478)
T ss_pred hhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH
Confidence 34578999999999999999999999997665544333334457899999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
++|.++|..++..+|++++|||+.+|..+||++|+.++..+|+|++||++||||++++++.++.+++++..+++.++++.
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~ 234 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG 234 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999888889999999877778888889999999999877
Q ss_pred CCCeEEEeccccccc----------CCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEE
Q psy15217 166 NDIPIIKGSAKLALE----------GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVE 235 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~----------~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~ 235 (396)
.++|++|+||+++++ +..+||. ++.+|+++|.+..|.|.++.+.||+|+|+++|+++|+|+|++|+|+
T Consensus 235 ~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~--~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~ 312 (478)
T PLN03126 235 DDIPIISGSALLALEALMENPNIKRGDNKWVD--KIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVE 312 (478)
T ss_pred CcceEEEEEccccccccccccccccCCCchhh--hHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEE
Confidence 789999999999854 2347884 5889999999877778888899999999999999999999999999
Q ss_pred eeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCCCceeEEEEEEEEee
Q psy15217 236 RGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALS 315 (396)
Q Consensus 236 ~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~ 315 (396)
+|.+++||.|.++|.+.+..++|++|+.++.+++.|.|||+|+++|++++..++++|++|++++++++++.|+|++.||+
T Consensus 313 sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~~~~~~~~F~A~i~vL~ 392 (478)
T PLN03126 313 RGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPHTKFEAIVYVLK 392 (478)
T ss_pred cCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecCCCCCceEEEEEEEEEec
Confidence 99999999999998765678999999999999999999999999999999999999999999877777899999999999
Q ss_pred cCCCCCCcccccCceeEEEEEeeEEEEEEEccC-----CcccccCCCEEEEEEEecceeecccCCeEEEEeCCcEEEEEE
Q psy15217 316 KDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPK-----NKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGV 390 (396)
Q Consensus 316 ~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~~~t~~~G~ 390 (396)
++.++++++|.+||++++|+|+.+++|++..+. +++++++||.+.|+|+|.+|+|+++++||+||++|+|+|+|+
T Consensus 393 ~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~~~~~~l~~gd~a~v~l~~~~Pi~~~~~~RfilR~~~~Tva~G~ 472 (478)
T PLN03126 393 KEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGV 472 (478)
T ss_pred ccccCCcccccCCcEEEEEEEecEEEEEEEEEecccCCCccEeCCCCEEEEEEEECCeEEEccCCEEEEecCCceEEEEE
Confidence 875556679999999999999999999997543 457899999999999999999999999999999999999999
Q ss_pred EeeecC
Q psy15217 391 VVKIIE 396 (396)
Q Consensus 391 i~~v~~ 396 (396)
|+++.|
T Consensus 473 V~~v~~ 478 (478)
T PLN03126 473 IQSIIE 478 (478)
T ss_pred EEEecC
Confidence 999875
No 10
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1.3e-74 Score=561.10 Aligned_cols=394 Identities=71% Similarity=1.153 Sum_probs=355.5
Q ss_pred CCcccccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEE
Q psy15217 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHV 80 (396)
Q Consensus 1 ~~~~~~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ii 80 (396)
|+.+.|..++++++|+++||+|||||||+++|++............+..+|..++|+++|+|++.....|+.+++.+.|+
T Consensus 1 ~~~~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~i 80 (409)
T CHL00071 1 MAREKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHV 80 (409)
T ss_pred CchhhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEE
Confidence 78888899999999999999999999999999986554433333344568999999999999999998999888999999
Q ss_pred ecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 81 DtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
|||||.+|.+++.+++..+|++++|+|+.+|..+|+++|+.++..+++|++|+++||||++++++.++.+++++..+++.
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~ 160 (409)
T CHL00071 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSK 160 (409)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899999998777788888899999999
Q ss_pred cCCCCCCCeEEEecccccccC----------CCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEE
Q psy15217 161 YEFPGNDIPIIKGSAKLALEG----------DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVV 230 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~----------~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~ 230 (396)
++++++.+|++|+||++|+|. ..+||. ++.+|+++|.+.+|+|.++.+.||+|+|+++|++++.|+|+
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~--~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv 238 (409)
T CHL00071 161 YDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVD--KIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVA 238 (409)
T ss_pred hCCCCCcceEEEcchhhcccccccCccccccCCchhh--hHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEE
Confidence 988766799999999998752 136884 67899999999888888888999999999999999999999
Q ss_pred EEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCCCceeEEEEE
Q psy15217 231 TGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGE 310 (396)
Q Consensus 231 ~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~ 310 (396)
+|+|.+|.+++||.|.+.|.++...++|++|+++++++++|.|||+|+++|++++..++++||+|++++.++++++|+|+
T Consensus 239 ~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~ 318 (409)
T CHL00071 239 TGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPGTITPHTKFEAQ 318 (409)
T ss_pred EEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCCCCCcceEEEEE
Confidence 99999999999999998875555678999999999999999999999999999988999999999998877778999999
Q ss_pred EEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEccC-----CcccccCCCEEEEEEEecceeecccCCeEEEEeCCcE
Q psy15217 311 IYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPK-----NKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGGRT 385 (396)
Q Consensus 311 v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~~~t 385 (396)
|.+|+++.+++.++|.+||+|++|+|+.++.|++.... +++.+++||.+.|+|+|.+|+|+++++||+||++|+|
T Consensus 319 i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~~~~~~~~l~~g~~a~v~l~~~~pi~~e~~~rfilR~~~~t 398 (409)
T CHL00071 319 VYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTADDGSKTEMVMPGDRIKMTVELIYPIAIEKGMRFAIREGGRT 398 (409)
T ss_pred EEEEecccCCccccccCCceEEEEEcccEEEEEEEEEcccCCCCCcEecCCCEEEEEEEECCeEEEeeCCEEEEecCCeE
Confidence 99999864444578999999999999999999997553 3678999999999999999999999999999999999
Q ss_pred EEEEEEeeecC
Q psy15217 386 VGAGVVVKIIE 396 (396)
Q Consensus 386 ~~~G~i~~v~~ 396 (396)
+|+|.|++++.
T Consensus 399 ig~G~V~~~~~ 409 (409)
T CHL00071 399 VGAGVVSKILK 409 (409)
T ss_pred EEEEEEEEecC
Confidence 99999999863
No 11
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2e-74 Score=561.77 Aligned_cols=378 Identities=31% Similarity=0.444 Sum_probs=334.2
Q ss_pred cCCCCeeEEEEEeCCCCChHHHHHHHHhhhh---------------hhcCCccccccccCCChhHhhcCceEEeeeeEEe
Q psy15217 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71 (396)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~ 71 (396)
...|+++||+++||+|||||||+++|+.... +.+...+.+.+.+|..++|++||+|++.+...|+
T Consensus 2 ~~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~ 81 (447)
T PLN00043 2 GKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE 81 (447)
T ss_pred CCCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec
Confidence 3568999999999999999999999986432 1112233445789999999999999999999999
Q ss_pred eCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCC-------hhHHHHHHHHHHcCCCeEEEEEeccCCCC--
Q psy15217 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMVD-- 142 (396)
Q Consensus 72 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~D~~~-- 142 (396)
++++.++|+|||||++|.++|..+++.+|++|||||+.+|.+ +||++|+.++..+|+|++||++||||+.+
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~ 161 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 161 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchh
Confidence 999999999999999999999999999999999999999743 79999999999999999998999999873
Q ss_pred H-HHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccC-----CCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEE
Q psy15217 143 D-EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEG-----DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLP 216 (396)
Q Consensus 143 ~-~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~-----~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~ 216 (396)
+ ++.++.+.++++.+++..++..+++||+|+||++|.|. ..+||.++ .|+++|.+ +++|.++.+.||+|+
T Consensus 162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~---tLl~~l~~-i~~p~~~~~~plr~~ 237 (447)
T PLN00043 162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGP---TLLEALDQ-INEPKRPSDKPLRLP 237 (447)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchH---HHHHHHhh-cCCCccccCCCcEEE
Confidence 3 45678888899999999998777799999999999873 24899754 67777776 567778889999999
Q ss_pred EEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEe
Q psy15217 217 VEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296 (396)
Q Consensus 217 i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 296 (396)
|+++|++++.|+|+.|+|++|.+++||+|.++|.+ ..++|+||++++.++++|.|||+|+++|++++..++++|+||+
T Consensus 238 I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~--~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~ 315 (447)
T PLN00043 238 LQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTG--LTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVAS 315 (447)
T ss_pred EEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCC--CEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEc
Confidence 99999999999999999999999999999999854 5789999999999999999999999999999889999999999
Q ss_pred cCC-CC-CceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEc-------------cCCcccccCCCEEEE
Q psy15217 297 KPG-SI-KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIEL-------------PKNKEMVMPGDNVLI 361 (396)
Q Consensus 297 ~~~-~~-~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~-------------~~~~~~l~~g~~~~v 361 (396)
++. +| ..+++|+|+|.||+++ .+|.+||+|++|+++.+++|++.- .+++.+|++||.+.|
T Consensus 316 ~~~~~p~~~~~~F~A~i~~l~~~-----~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v 390 (447)
T PLN00043 316 NSKDDPAKEAANFTSQVIIMNHP-----GQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFV 390 (447)
T ss_pred cCCCCCCccccEEEEEEEEECCC-----CCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEE
Confidence 873 33 5579999999999986 689999999999999999998741 134678999999999
Q ss_pred EEEecceeecccC------CeEEEEeCCcEEEEEEEeeec
Q psy15217 362 TVRLINPIAMEEG------LRFAIREGGRTVGAGVVVKII 395 (396)
Q Consensus 362 ~~~~~~p~~~~~~------~r~~lr~~~~t~~~G~i~~v~ 395 (396)
+|++.+|+|++++ +||+|||+|+|+|+|+|++|.
T Consensus 391 ~i~~~~pi~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~v~ 430 (447)
T PLN00043 391 KMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVE 430 (447)
T ss_pred EEEECCcEEEEecccCCCCceEEEEECCCeEEEEEEEEEe
Confidence 9999999999974 899999999999999999874
No 12
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=2e-73 Score=555.19 Aligned_cols=377 Identities=33% Similarity=0.486 Sum_probs=334.7
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhh---------------hhcCCccccccccCCChhHhhcCceEEeeeeEEee
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 72 (396)
.+++++||+++||+|||||||+++|+.... ..+.+.+.+.+.+|..++|+++|+|++.++..+++
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 468899999999999999999999986432 12334455567899999999999999999999999
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCC-------hhHHHHHHHHHHcCCCeEEEEEeccC--CCCH
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKAD--MVDD 143 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~D--~~~~ 143 (396)
+++.++|+|||||.+|.++|..+++.+|+++|||||.+|.+ +||++|+.++..+|+|++||++|||| .+++
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 99999999999999999999999999999999999999974 89999999999999999988999999 4444
Q ss_pred -HHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccC-----CCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEE
Q psy15217 144 -EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEG-----DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPV 217 (396)
Q Consensus 144 -~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~-----~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i 217 (396)
++.++.+.+++..+++.+++..+++|++|+||.+|.|. ..+||.++ +|+++|.+ +++|.++.++|++|+|
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~---tL~~~l~~-~~~~~~~~~~p~r~~I 238 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGP---TLLEALDT-LEPPKRPVDKPLRLPL 238 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchH---HHHHHHhC-CCCCCcCCCCCeEEEE
Confidence 46788888899999999998767899999999998763 35799754 67777766 4567777889999999
Q ss_pred EEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEec
Q psy15217 218 EDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAK 297 (396)
Q Consensus 218 ~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~ 297 (396)
+++|+++|.|+|++|+|.+|.|++||+|.++|.+ ..++|++|++++.++++|.|||+|+++|++++..++++|++|++
T Consensus 239 ~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~--~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~ 316 (446)
T PTZ00141 239 QDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSG--VTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASD 316 (446)
T ss_pred EEEEecCCceEEEEEEEEcceEecCCEEEEccCC--cEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEec
Confidence 9999999999999999999999999999999854 67899999999999999999999999999999999999999998
Q ss_pred CC-C-CCceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEcc-------------CCcccccCCCEEEEE
Q psy15217 298 PG-S-IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLIT 362 (396)
Q Consensus 298 ~~-~-~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~g~~~~v~ 362 (396)
++ . +.++++|+|+|.||+++ ++|++||+|++|+++.++.|++... .++++|++|+.+.|+
T Consensus 317 ~~~~p~~~~~~f~a~i~~l~~~-----~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~ 391 (446)
T PTZ00141 317 SKNDPAKECADFTAQVIVLNHP-----GQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVK 391 (446)
T ss_pred CCCCCCccceEEEEEEEEECCC-----CccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEE
Confidence 74 3 34578999999999986 5899999999999999999998633 245789999999999
Q ss_pred EEecceeecccC------CeEEEEeCCcEEEEEEEeeec
Q psy15217 363 VRLINPIAMEEG------LRFAIREGGRTVGAGVVVKII 395 (396)
Q Consensus 363 ~~~~~p~~~~~~------~r~~lr~~~~t~~~G~i~~v~ 395 (396)
|++++|+|++++ +||+||++|+|+|+|.|++|.
T Consensus 392 l~~~~pi~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~ 430 (446)
T PTZ00141 392 MVPTKPMCVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVE 430 (446)
T ss_pred EEECCceEEeecccCCCCccEEEEECCCEEEEEEEEEEe
Confidence 999999999964 799999999999999999875
No 13
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=2.6e-70 Score=535.58 Aligned_cols=376 Identities=38% Similarity=0.610 Sum_probs=333.1
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhh---------------hcCCccccccccCCChhHhhcCceEEeeeeEEeeC
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSK---------------KFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK 73 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~---------------~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~ 73 (396)
+|+++||+++||+|||||||+++|+..... .+...+...+.+|..++|+++|+|++..+..++.+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 578999999999999999999999854322 13334455678999999999999999999999999
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCC--CCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH-HHHHHHH
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD--GPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELV 150 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~--g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~~~~~~i 150 (396)
++.++|||||||++|.+++..++..+|++++|+|+++ +...|+++|+.++..+++++++|++||+|+.++ ++.++.+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence 9999999999999999999999999999999999999 899999999999999998878888999999864 3455667
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEecccccccC-----CCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCC
Q psy15217 151 EIEIRELLNKYEFPGNDIPIIKGSAKLALEG-----DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG 225 (396)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~-----~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~ 225 (396)
.+++.++++.+++....++++++||++|.+. ..+||.+ ..|+++|.. +++|.++.++||+|+|+++|.+++
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g---~~L~~~l~~-~~~~~~~~~~p~r~~i~~~~~~~g 238 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNG---PTLLEALDN-LKPPEKPTDKPLRIPIQDVYSISG 238 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccH---HHHHHHHhc-CCCCccccCCCcEEEEEEEEeeCC
Confidence 7788899988888655689999999998763 3489975 577888766 677777889999999999999999
Q ss_pred CceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCC-CCce
Q psy15217 226 RGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS-IKPH 304 (396)
Q Consensus 226 ~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~ 304 (396)
.|+|++|+|++|.|++||.|.++|.+ ..++|++|+.++++++.|.|||+|+++|++++..++++|++|++++. +..+
T Consensus 239 ~G~vv~G~v~~G~v~~Gd~v~i~P~~--~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~~~~~~ 316 (425)
T PRK12317 239 VGTVPVGRVETGVLKVGDKVVFMPAG--VVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDNPPTVA 316 (425)
T ss_pred CeEEEEEEEeeccEecCCEEEECCCC--CeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCCCCCCcc
Confidence 99999999999999999999999854 57899999999999999999999999999998899999999998865 4557
Q ss_pred eEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEcc-------------CCcccccCCCEEEEEEEecceeec
Q psy15217 305 KHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVRLINPIAM 371 (396)
Q Consensus 305 ~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~g~~~~v~~~~~~p~~~ 371 (396)
++|+|+|.||+++ ++|++||++++|+++.+++|++..+ .++.+|++||.+.|+|+|.+|+|+
T Consensus 317 ~~f~a~v~~l~~~-----~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~~ 391 (425)
T PRK12317 317 EEFTAQIVVLQHP-----SAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLVI 391 (425)
T ss_pred cEEEEEEEEECCC-----CcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeEE
Confidence 9999999999986 5899999999999999999998632 346789999999999999999999
Q ss_pred ccC------CeEEEEeCCcEEEEEEEeeec
Q psy15217 372 EEG------LRFAIREGGRTVGAGVVVKII 395 (396)
Q Consensus 372 ~~~------~r~~lr~~~~t~~~G~i~~v~ 395 (396)
++| +||+||++|+|+|+|.|+++.
T Consensus 392 ~~~~~~~~lgrfilr~~g~tv~~G~i~~v~ 421 (425)
T PRK12317 392 EKVKEIPQLGRFAIRDMGQTIAAGMVIDVK 421 (425)
T ss_pred EeCCcCCCCccEEEEECCCeEEEEEEEEec
Confidence 987 799999999999999999875
No 14
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=5e-70 Score=533.35 Aligned_cols=378 Identities=36% Similarity=0.579 Sum_probs=333.4
Q ss_pred cCCCCeeEEEEEeCCCCChHHHHHHHHhhhh---------------hhcCCccccccccCCChhHhhcCceEEeeeeEEe
Q psy15217 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71 (396)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~ 71 (396)
..+++++||+++||+|||||||+++|+.... ..+.+.+.+.+.+|..++|+++|+|++.....++
T Consensus 2 ~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~ 81 (426)
T TIGR00483 2 AKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE 81 (426)
T ss_pred CCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc
Confidence 3568899999999999999999999986321 1233344456789999999999999999999999
Q ss_pred eCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCC---CChhHHHHHHHHHHcCCCeEEEEEeccCCCCH-HHHH
Q psy15217 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG---PMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELL 147 (396)
Q Consensus 72 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g---~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~~~~ 147 (396)
.++..+.|||||||++|.+++..++..+|+++||+|++++ ...|+.+|+.++..++++++||++||+|+.++ ++.+
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHH
Confidence 9999999999999999999999999999999999999998 77899999999999998888889999999864 3456
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecccccccC-----CCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEe
Q psy15217 148 ELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEG-----DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFS 222 (396)
Q Consensus 148 ~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~-----~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~ 222 (396)
+.+..++.++++..++....++++++||++|.+. ..+||.+ .+|+++|.+ +++|.+..++||+|+|+++|+
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g---~~l~~~l~~-~~~~~~~~~~p~r~~i~~v~~ 237 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKG---KTLLEALDA-LEPPEKPTDKPLRIPIQDVYS 237 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccc---hHHHHHHhc-CCCCCCccCCCcEEEEEEEEe
Confidence 6677789999998888666789999999998763 3589975 478888876 566777788999999999999
Q ss_pred eCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCC-C
Q psy15217 223 ISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS-I 301 (396)
Q Consensus 223 ~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~ 301 (396)
++|.|+|++|+|++|.|++||.|.++|.+ ..++|+||++++.++++|.|||+|+++|++++..++++||+|++++. +
T Consensus 238 ~~g~G~vv~G~v~~G~i~~gd~v~i~P~~--~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~~~ 315 (426)
T TIGR00483 238 ITGVGTVPVGRVETGVLKPGDKVVFEPAG--VSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDNPP 315 (426)
T ss_pred cCCCeEEEEEEEccceeecCCEEEECCCC--cEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCCCC
Confidence 99999999999999999999999999854 67899999999999999999999999999999899999999998864 4
Q ss_pred CceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEcc-------------CCcccccCCCEEEEEEEecce
Q psy15217 302 KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVRLINP 368 (396)
Q Consensus 302 ~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~g~~~~v~~~~~~p 368 (396)
+++++|+|++.||+++ ++|.+||+|++|+|+.++.|++..+ +++.+|++||.+.|+|+|++|
T Consensus 316 ~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~p 390 (426)
T TIGR00483 316 KVAKEFTAQIVVLQHP-----GAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKP 390 (426)
T ss_pred ceeeEEEEEEEEECCC-----CccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCe
Confidence 5578999999999986 5899999999999999999998532 356799999999999999999
Q ss_pred eeccc------CCeEEEEeCCcEEEEEEEeeec
Q psy15217 369 IAMEE------GLRFAIREGGRTVGAGVVVKII 395 (396)
Q Consensus 369 ~~~~~------~~r~~lr~~~~t~~~G~i~~v~ 395 (396)
+|+++ .+||+||++|+|+|+|.|+++.
T Consensus 391 i~~e~~~~~~~~grf~lr~~g~tv~~G~v~~~~ 423 (426)
T TIGR00483 391 MVIEAVKEIPPLGRFAIRDMGQTVAAGMIIDVD 423 (426)
T ss_pred eEEeecccCCCCccEEEEECCCEEEEEEEEEee
Confidence 99997 4899999999999999999874
No 15
>KOG0458|consensus
Probab=100.00 E-value=9.8e-67 Score=494.52 Aligned_cols=378 Identities=27% Similarity=0.419 Sum_probs=336.9
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhh---------------hhcCCccccccccCCChhHhhcCceEEeeeeEEee
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 72 (396)
..+++++++++||+|+|||||+|+|+..+. ..|.+++.+.|.+|...+||+||+|.+.....|+.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 446899999999999999999999985432 23455666679999999999999999999999999
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCC-------hhHHHHHHHHHHcCCCeEEEEEeccCCCCH-H
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMVDD-E 144 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~ 144 (396)
..+.++|+|+|||.+|+++|+.|+.+||+++|||||+.|.+ +||+||+.+++.+|+.++||++||||+++| +
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccH
Confidence 99999999999999999999999999999999999998654 799999999999999999999999999999 6
Q ss_pred HHHHHHHHHHHHHH-hhcCCCCCCCeEEEecccccccCC--------CCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeE
Q psy15217 145 ELLELVEIEIRELL-NKYEFPGNDIPIIKGSAKLALEGD--------TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLL 215 (396)
Q Consensus 145 ~~~~~i~~~~~~~l-~~~~~~~~~~~~i~~Sa~~g~~~~--------~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~ 215 (396)
++++.++..+..+| +.+||...++.|+|+|++.|.|-. ..||.++ +||+.|++ +..|.++.+.||++
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp---~LL~~id~-~~~p~~~~~kPl~l 408 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGP---TLLSQIDS-FKIPERPIDKPLRL 408 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCC---hHHHHHhh-ccCCCCcccCCeEE
Confidence 79999999999999 889998888899999999998721 3799887 67777777 66677888999999
Q ss_pred EEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEE
Q psy15217 216 PVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVL 295 (396)
Q Consensus 216 ~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl 295 (396)
.|.++++.++.|..++|+|++|.|++||+|+++|. ...++|++|.+++++...|.|||.|.+.|.++..+.++.|+++
T Consensus 409 tIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s--~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~ 486 (603)
T KOG0458|consen 409 TISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTS--REDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIA 486 (603)
T ss_pred EhhheeecCCCeeEEEEEEeccccccCCEEEEecC--cceEEEEeeecCCCcceeEeeCCEEEEecCccChhhcccceee
Confidence 99999999999999999999999999999999974 3678999999999999999999999999999999999999999
Q ss_pred e-cCCCC-CceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEE-------------ccCCcccccCCCEEE
Q psy15217 296 A-KPGSI-KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIE-------------LPKNKEMVMPGDNVL 360 (396)
Q Consensus 296 ~-~~~~~-~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~-------------~~~~~~~l~~g~~~~ 360 (396)
+ .+..+ +.+.+|.+++.||+.. .||..|.+..+|+|+..++|++. ..+.+++|.+|+.|.
T Consensus 487 ~~~~~~~i~~~~~f~~~~~~f~~~-----~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~ 561 (603)
T KOG0458|consen 487 DSGPQFPISKTTRFVARITTFDIN-----LPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAI 561 (603)
T ss_pred ecCCCccccceeEEEEEEEEeecc-----ccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceee
Confidence 9 55544 3458999999999975 79999999999999887766552 123457899999999
Q ss_pred EEEEecceeecccC------CeEEEEeCCcEEEEEEEeeecC
Q psy15217 361 ITVRLINPIAMEEG------LRFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 361 v~~~~~~p~~~~~~------~r~~lr~~~~t~~~G~i~~v~~ 396 (396)
++++..+|+|++.+ +||++|..|+|+|+|+|++|.+
T Consensus 562 vele~~~pI~~etf~~~~~lgr~vlr~~g~TiAaG~V~~i~~ 603 (603)
T KOG0458|consen 562 VELETERPICLETFAENRALGRVVLRKSGSTIAAGKVTEIIQ 603 (603)
T ss_pred eeccccCchhhhhhhhchhheeEEEeccCceeeeeeEEeecC
Confidence 99999999999965 7999999999999999999853
No 16
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-66 Score=460.06 Aligned_cols=368 Identities=26% Similarity=0.386 Sum_probs=319.7
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhh-----------------hcCCccccccccCCChhHhhcCceEEeeeeEE
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSK-----------------KFGGEAKSYDQIDAAPEEKARGITINTAHIEY 70 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~-----------------~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~ 70 (396)
+.+..++++.||++|.|||||+|+|+..... ..+........+|-+..||+.|+||++++.+|
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 3467899999999999999999999853211 11122223346899999999999999999999
Q ss_pred eeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH-HHHHHH
Q psy15217 71 ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLEL 149 (396)
Q Consensus 71 ~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~~~~~~ 149 (396)
.++.+.|++.|||||+.|.+||..|++.||++|++|||..|+..||+.|..++..+||++++|++||||++++ ++.|+.
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~ 161 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEA 161 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 678999
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEeccccccc-----CCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeC
Q psy15217 150 VEIEIRELLNKYEFPGNDIPIIKGSAKLALE-----GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSIS 224 (396)
Q Consensus 150 i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~-----~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~ 224 (396)
+..+...|.+++++. ...++|+||+.|.| ..++||.++.+.+.|+.+. .......++|||||+.+.+..
T Consensus 162 I~~dy~~fa~~L~~~--~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~----i~~~~~~~~~RfPVQ~V~Rp~ 235 (431)
T COG2895 162 IVADYLAFAAQLGLK--DVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVE----IADDRSAKAFRFPVQYVNRPN 235 (431)
T ss_pred HHHHHHHHHHHcCCC--cceEEechhccCCcccccccCCCcccCccHHHHHhhcc----ccccccccceeeceEEecCCC
Confidence 999999999999984 56899999999987 4579999997777777643 333446678999999998854
Q ss_pred --CCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCC-
Q psy15217 225 --GRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI- 301 (396)
Q Consensus 225 --~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~- 301 (396)
.+| +.|+|.+|.+++||++.+.|++ ...+|+.|..+..+.++|.+|+.|++.|. +..++.||++|+..+.+
T Consensus 236 ~dfRG--yaGtiasG~v~~Gd~vvvlPsG--~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~~~~~ 309 (431)
T COG2895 236 LDFRG--YAGTIASGSVKVGDEVVVLPSG--KTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAADAPP 309 (431)
T ss_pred Ccccc--cceeeeccceecCCeEEEccCC--CeeeEEEEeccCCchhhccCCceEEEEEc--ceeecccCcEEEccCCCc
Confidence 456 8999999999999999999854 77899999999999999999999999998 78899999999988764
Q ss_pred CceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEcc-----------CCcccccCCCEEEEEEEecceee
Q psy15217 302 KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-----------KNKEMVMPGDNVLITVRLINPIA 370 (396)
Q Consensus 302 ~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----------~~~~~l~~g~~~~v~~~~~~p~~ 370 (396)
.++..|.|.|+||... |+.+|..+.+..++..+.+++.-+ ...+.|..|+.+.|++.++.|++
T Consensus 310 ~~~~~f~A~vvWm~~~------pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~~a~~l~lN~Ig~v~i~~~~pi~ 383 (431)
T COG2895 310 AVADAFDADVVWMDEE------PLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQEGAESLPLNEIGRVRISFDKPIA 383 (431)
T ss_pred chhhhcceeEEEecCC------CCCCCceEEEEecceEEEEEeeeeEEEEeccccccccccccCCCcceEEEEecCCcee
Confidence 4578999999999874 899999999999998888877522 23567889999999999999999
Q ss_pred cccC------CeEEE--EeCCcEEEEEEEee
Q psy15217 371 MEEG------LRFAI--REGGRTVGAGVVVK 393 (396)
Q Consensus 371 ~~~~------~r~~l--r~~~~t~~~G~i~~ 393 (396)
+++| ++|+| |..|.|+|+|+|.+
T Consensus 384 fd~Y~~N~atG~FIlID~~tn~TVgaGmI~~ 414 (431)
T COG2895 384 FDAYAENRATGSFILIDRLTNGTVGAGMILA 414 (431)
T ss_pred ecccccCcccccEEEEEcCCCCceeceeeec
Confidence 9988 57887 45688999999975
No 17
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=7.2e-65 Score=498.71 Aligned_cols=375 Identities=24% Similarity=0.328 Sum_probs=317.7
Q ss_pred ccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhh---------------hcC--CccccccccCCChhHhhcCceEEeeee
Q psy15217 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSK---------------KFG--GEAKSYDQIDAAPEEKARGITINTAHI 68 (396)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~---------------~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~ 68 (396)
+++.+++++|+++||+|||||||+++|+..... .+. +.....|.+|..++|++||+|++..+.
T Consensus 21 ~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~ 100 (474)
T PRK05124 21 AQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYR 100 (474)
T ss_pred hccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEE
Confidence 345688999999999999999999999865321 111 133445789999999999999999999
Q ss_pred EEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH-HHHH
Q psy15217 69 EYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELL 147 (396)
Q Consensus 69 ~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~~~~ 147 (396)
.++++++.++|||||||++|.++|..++..+|++++|||+.+|..+||++|+.++..++++++||++||||+.++ ++.+
T Consensus 101 ~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 101 YFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred EeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888889999999864 3456
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecccccccC-----CCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEe
Q psy15217 148 ELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEG-----DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFS 222 (396)
Q Consensus 148 ~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~-----~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~ 222 (396)
+.+..++..+++.+++. ...+++|+||++|.+. .++||.++ +|+++|.. +++|.+..+.|++|+|+++++
T Consensus 181 ~~i~~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~~~~~wy~G~---tLl~~L~~-i~~~~~~~~~p~r~~I~~v~~ 255 (474)
T PRK05124 181 ERIREDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQSESMPWYSGP---TLLEVLET-VDIQRVVDAQPFRFPVQYVNR 255 (474)
T ss_pred HHHHHHHHHHHHhcCCC-CCceEEEEEeecCCCcccccccccccchh---hHHHHHhh-cCCCCCCCCCCceeeEEEEEe
Confidence 66777787877776632 3589999999999773 35899654 56666654 566677788999999999987
Q ss_pred eCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCC-C
Q psy15217 223 ISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS-I 301 (396)
Q Consensus 223 ~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~ 301 (396)
.......+.|+|.+|.|++||+|.++|.+ ..++|++|++++.+++.|.|||+|+++|++ ..++++|||||+++. +
T Consensus 256 ~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~--~~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~~~~~ 331 (474)
T PRK05124 256 PNLDFRGYAGTLASGVVKVGDRVKVLPSG--KESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAADEAL 331 (474)
T ss_pred cCCcccceEEEEEeEEEecCCEEEEecCC--ceEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECCCCCC
Confidence 54322237899999999999999999854 678999999999999999999999999984 578999999999875 4
Q ss_pred CceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEccC-----------CcccccCCCEEEEEEEecceee
Q psy15217 302 KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPK-----------NKEMVMPGDNVLITVRLINPIA 370 (396)
Q Consensus 302 ~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~l~~g~~~~v~~~~~~p~~ 370 (396)
.+++.|+|++.||+. .+|.+||++++|+|+.+++|++..+. .+.+|++|+.+.|+|++.+|+|
T Consensus 332 ~~~~~f~a~i~~l~~------~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~~~~~~l~~g~~a~v~l~~~~pv~ 405 (474)
T PRK05124 332 QAVQHASADVVWMAE------QPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQREAENLPLNGIGLVELTFDEPLV 405 (474)
T ss_pred ccceEEEEEEEEeCC------cccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcccCccccCCCCEEEEEEEECCeec
Confidence 567999999999973 48999999999999999999986432 3568999999999999999999
Q ss_pred cccC------CeEEE--EeCCcEEEEEEEeeec
Q psy15217 371 MEEG------LRFAI--REGGRTVGAGVVVKII 395 (396)
Q Consensus 371 ~~~~------~r~~l--r~~~~t~~~G~i~~v~ 395 (396)
++++ +||+| |++++|+|+|.|+++.
T Consensus 406 ~e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~ 438 (474)
T PRK05124 406 LDPYQQNRVTGGFIFIDRLTNVTVGAGMVREPL 438 (474)
T ss_pred cccCCcCCcceeEEEEECCCCceEEEEEEeccc
Confidence 9987 57999 5678999999998754
No 18
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=1.6e-64 Score=489.47 Aligned_cols=363 Identities=27% Similarity=0.371 Sum_probs=311.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhh---------------hcC--CccccccccCCChhHhhcCceEEeeeeEEeeCCe
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSK---------------KFG--GEAKSYDQIDAAPEEKARGITINTAHIEYETKAR 75 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~---------------~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~ 75 (396)
++|+++||+|||||||+++|+..... .+. +++.+.|.+|..++|++||+|++..+..++++++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999854321 111 2345567899999999999999999999999999
Q ss_pred eEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH-HHHHHHHHHHH
Q psy15217 76 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEI 154 (396)
Q Consensus 76 ~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~~~~~~i~~~~ 154 (396)
.++|+|||||++|.++|..++..+|++++|||+.+|..+||++|+.++..++++++||++||||+.++ ++.++.+.+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~ 160 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDY 160 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999864 34566677778
Q ss_pred HHHHhhcCCCCCCCeEEEecccccccC-----CCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceE
Q psy15217 155 RELLNKYEFPGNDIPIIKGSAKLALEG-----DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTV 229 (396)
Q Consensus 155 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~-----~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v 229 (396)
..+++.+++ .+.+++|+||++|.|. ..+||.++ .|+++|.. ++.|.+..+.|++|+|+++|+....+..
T Consensus 161 ~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~~~~wy~g~---tL~~~L~~-~~~~~~~~~~p~r~~i~~v~~~~~~~~g 234 (406)
T TIGR02034 161 LAFAEQLGF--RDVTFIPLSALKGDNVVSRSESMPWYSGP---TLLEILET-VEVERDAQDLPLRFPVQYVNRPNLDFRG 234 (406)
T ss_pred HHHHHHcCC--CCccEEEeecccCCCCcccccCCCccchh---HHHHHHHh-cCCCCCcCCCCcccceEEEeecCCCcEE
Confidence 888887776 3678999999998763 35799654 56666655 4566677889999999999876443344
Q ss_pred EEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCC-CCceeEEE
Q psy15217 230 VTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS-IKPHKHFT 308 (396)
Q Consensus 230 ~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f~ 308 (396)
++|+|++|.|++||+|.++|.+ ..++|++|++++.++++|.|||+|+++|++ ..++++|++||+++. +++++.|+
T Consensus 235 ~~G~v~~G~l~~gd~v~i~P~~--~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~~~~~f~ 310 (406)
T TIGR02034 235 YAGTIASGSVHVGDEVVVLPSG--RSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPEVADQFA 310 (406)
T ss_pred EEEEEecceeecCCEEEEeCCC--cEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCCcceEEE
Confidence 7899999999999999999854 679999999999999999999999999984 578999999999876 45679999
Q ss_pred EEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEccC-----------CcccccCCCEEEEEEEecceeecccC---
Q psy15217 309 GEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPK-----------NKEMVMPGDNVLITVRLINPIAMEEG--- 374 (396)
Q Consensus 309 a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~l~~g~~~~v~~~~~~p~~~~~~--- 374 (396)
|++.|+++ .+|.+||++++|+|+.++.|++.... .+..+.+|+.+.|+|++++|+|++.+
T Consensus 311 a~i~~l~~------~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~~~~~~l~~~~~~~v~l~~~~p~~~~~~~~~ 384 (406)
T TIGR02034 311 ATLVWMAE------EPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEKGAAKSLELNEIGRVNLSLDEPIAFDPYAEN 384 (406)
T ss_pred EEEEEeCh------hhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcccCCcccCCCCEEEEEEEECCeeccCcccCC
Confidence 99999985 38999999999999999999986432 24678899999999999999999987
Q ss_pred ---CeEEE--EeCCcEEEEEEE
Q psy15217 375 ---LRFAI--REGGRTVGAGVV 391 (396)
Q Consensus 375 ---~r~~l--r~~~~t~~~G~i 391 (396)
+||+| |++|+|+|+|.|
T Consensus 385 ~~lGr~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 385 RTTGAFILIDRLSNRTVGAGMI 406 (406)
T ss_pred CcceeEEEEECCCCCeEEEEeC
Confidence 49999 678999999986
No 19
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=1.8e-65 Score=461.72 Aligned_cols=366 Identities=31% Similarity=0.532 Sum_probs=323.0
Q ss_pred cCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEe---------------
Q psy15217 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE--------------- 71 (396)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~--------------- 71 (396)
+..++++.++++||+|||||||++.|+....+.+.+..+.+ +|.+++|.++|.|.+.++..+.
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~--ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~ 189 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSY--LDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDE 189 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhh--hhhhhHHHhhccccceeEEEEEecCCceEeecCcccH
Confidence 34678999999999999999999999988888888877765 8999999999999988776542
Q ss_pred --------eCCeeEEEEecCChhhhHHHHHhhhh--cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 72 --------TKARHYAHVDCPGHADYIKNMITGAA--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 72 --------~~~~~~~iiDtpG~~~~~~~~~~~~~--~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
..++.+.|+||-||+.|++++++|+- ..|+.+|+|.|++|++.+|+||+.++.++++|. ||++||+|+.
T Consensus 190 aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPv-iVvvTK~D~~ 268 (527)
T COG5258 190 AEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPV-IVVVTKIDMV 268 (527)
T ss_pred HHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCE-EEEEEecccC
Confidence 23467899999999999999999985 689999999999999999999999999999995 5578999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCC--------------------CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 142 DDEELLELVEIEIRELLNKYEFPG--------------------NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 142 ~~~~~~~~i~~~~~~~l~~~~~~~--------------------~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
+. ++++.+.+++..+|+..+--+ .-+|++.+|+.+| +++ ++|+.+...
T Consensus 269 ~d-dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg----------~Gl-dlL~e~f~~ 336 (527)
T COG5258 269 PD-DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTG----------EGL-DLLDEFFLL 336 (527)
T ss_pred cH-HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccC----------ccH-HHHHHHHHh
Confidence 86 556667778888887654211 1479999999997 455 455555555
Q ss_pred CCCC-CCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCC--ceeEEEEEEEecceeeCeeecCCeEE
Q psy15217 202 IPTP-NRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD--TVKTTCTGVEMFRKLLDQGQAGDNIG 278 (396)
Q Consensus 202 l~~~-~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~--~~~~~v~si~~~~~~~~~a~~G~~v~ 278 (396)
+|+. ..+...||+|+|+++|.+.|.|+|+.|.|.+|.++.||+++++|... +.+++|+||++|+..+++|.||.+++
T Consensus 337 Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig 416 (527)
T COG5258 337 LPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIG 416 (527)
T ss_pred CCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEeccccCCcEEE
Confidence 7765 33567899999999999999999999999999999999999998753 68999999999999999999999999
Q ss_pred EEecccCccCCCCCeEEecCCCCCceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEccCCcccccCCCE
Q psy15217 279 LLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDN 358 (396)
Q Consensus 279 l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~ 358 (396)
++++|+..+++++||||+...+|.+.+.|+|+|.+|.|| |.|+.||.|++|+-++++.++++ +.+..+|++||+
T Consensus 417 ~Al~gv~~e~lerGMVl~~~~~pkaVref~AeV~vl~HP-----T~I~aGye~v~H~etI~e~~~f~-~id~~~L~~GD~ 490 (527)
T COG5258 417 IALKGVEKEELERGMVLSAGADPKAVREFDAEVLVLRHP-----TTIRAGYEPVFHYETIREAVYFE-EIDKGFLMPGDR 490 (527)
T ss_pred EEecccCHHHHhcceEecCCCCchhhheecceEEEEeCC-----cEEecCceeeeEeeEeeheeEEE-EcccccccCCCc
Confidence 999999999999999999887788899999999999998 89999999999999999999997 667789999999
Q ss_pred EEEEEEec-ceeecccCCeEEEEeCCcEEEEEEEeee
Q psy15217 359 VLITVRLI-NPIAMEEGLRFAIREGGRTVGAGVVVKI 394 (396)
Q Consensus 359 ~~v~~~~~-~p~~~~~~~r~~lr~~~~t~~~G~i~~v 394 (396)
..++++|. +|.++++|++|+||+ |++.|+|.|+++
T Consensus 491 g~vr~~fkyrP~~v~eGQ~fvFRe-GrskgvG~v~~~ 526 (527)
T COG5258 491 GVVRMRFKYRPHHVEEGQKFVFRE-GRSKGVGRVIRV 526 (527)
T ss_pred ceEEEEEEeCchhhccCcEEEEec-CCCccceEEecc
Confidence 99999998 999999999999998 799999999976
No 20
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=1.6e-62 Score=476.30 Aligned_cols=351 Identities=29% Similarity=0.413 Sum_probs=299.6
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEe---------------eC
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE---------------TK 73 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~---------------~~ 73 (396)
.+++++|+++||+|||||||+++|++. ..|++++|.+||+|++..+..+. ..
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~-------------~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~ 97 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGV-------------KTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYG 97 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCC-------------CcccchhhHHhCCchhccccccccccCcccCCcccccccC
Confidence 468899999999999999999999964 36889999999999998766441 11
Q ss_pred ------------------CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCC-CChhHHHHHHHHHHcCCCeEEEE
Q psy15217 74 ------------------ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-PMPQTREHILLARQVGVPYIVVF 134 (396)
Q Consensus 74 ------------------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g-~~~qt~e~l~~~~~~~ip~iIvv 134 (396)
.+.++|+|||||++|.++|..++..+|+++|||||.++ ..+||++|+.++..++++++||+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVv 177 (460)
T PTZ00327 98 SSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIIL 177 (460)
T ss_pred CCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEE
Confidence 24689999999999999999999999999999999996 79999999999999999998889
Q ss_pred EeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCcee
Q psy15217 135 LNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFL 214 (396)
Q Consensus 135 iNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~ 214 (396)
+||||++++++. +...++++++++.... ...|++|+||++| .|+++|+++|.+.+|.|.++.+.||+
T Consensus 178 lNKiDlv~~~~~-~~~~~ei~~~l~~~~~--~~~~iipVSA~~G----------~nI~~Ll~~L~~~lp~~~r~~~~p~r 244 (460)
T PTZ00327 178 QNKIDLVKEAQA-QDQYEEIRNFVKGTIA--DNAPIIPISAQLK----------YNIDVVLEYICTQIPIPKRDLTSPPR 244 (460)
T ss_pred EecccccCHHHH-HHHHHHHHHHHHhhcc--CCCeEEEeeCCCC----------CCHHHHHHHHHhhCCCCCCCCCCCcE
Confidence 999999976443 3344567777765432 4689999999998 68999999999889988888899999
Q ss_pred EEEEEEEeeCC--------CceEEEEEEEeeEEecCCEEEEeecCC-----c------eeEEEEEEEecceeeCeeecCC
Q psy15217 215 LPVEDVFSISG--------RGTVVTGRVERGIVRVGEELEIIGIKD-----T------VKTTCTGVEMFRKLLDQGQAGD 275 (396)
Q Consensus 215 ~~i~~~~~~~~--------~G~v~~g~v~~G~l~~g~~v~~~p~~~-----~------~~~~v~si~~~~~~~~~a~~G~ 275 (396)
++|+++|.+.+ +|+|++|+|.+|++++||+|.+.|.+. + ..++|+||+.++.++++|.|||
T Consensus 245 ~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~ 324 (460)
T PTZ00327 245 MIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGG 324 (460)
T ss_pred EEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCCC
Confidence 99999998864 799999999999999999999998531 1 3579999999999999999999
Q ss_pred eEEEEec---ccCccCCCCCeEEecCCCCCc-eeEEEEEEEEeecCC-----CCC----CcccccCceeEEEEEeeEEEE
Q psy15217 276 NIGLLLR---GTKREDVERGQVLAKPGSIKP-HKHFTGEIYALSKDE-----GGR----HTPFFSNYRPQFYFRTTDVTG 342 (396)
Q Consensus 276 ~v~l~l~---~~~~~~i~~G~vl~~~~~~~~-~~~f~a~v~~l~~~~-----~~~----~~~i~~g~~~~~~~~~~~~~~ 342 (396)
+|+++|+ ++++.++.||+||++++.+++ ++.|+|++.||+++. +++ .++|+.||++++|+|+.++.|
T Consensus 325 ~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~ 404 (460)
T PTZ00327 325 LIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTTTGG 404 (460)
T ss_pred EEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEecccccccccccccccCCcccCCCCEEEEEecccEEEE
Confidence 9999987 677889999999999876554 579999999998731 111 268999999999999999999
Q ss_pred EEEccCCcccccCCCEEEEEEEecceeecccCCeEEEEe---C-CcEEEEEEEee
Q psy15217 343 SIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIRE---G-GRTVGAGVVVK 393 (396)
Q Consensus 343 ~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~---~-~~t~~~G~i~~ 393 (396)
++....+ +. .++|+|.+|+|+++|+||+||. . ++|+|+|.|.+
T Consensus 405 ~i~~i~~-------~~-~~~l~l~~P~~~~~gdr~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 405 RVVGIKD-------DG-IAKLELTTPVCTSVGEKIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred EEEEeCC-------Ce-EEEEEECccEeccCCCEEEEEeccCCCcEEEEEEEEcC
Confidence 9975442 11 6789999999999999999984 3 58999999864
No 21
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=2.8e-61 Score=491.93 Aligned_cols=372 Identities=25% Similarity=0.310 Sum_probs=317.2
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhh---------------hcC--CccccccccCCChhHhhcCceEEeeeeEE
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSK---------------KFG--GEAKSYDQIDAAPEEKARGITINTAHIEY 70 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~---------------~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~ 70 (396)
..+++++|+++||+|||||||+++|+..... .+. ......+.+|..++|+++|+|++..+..+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 4567899999999999999999999865321 111 23334578999999999999999999999
Q ss_pred eeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH-HHHHHH
Q psy15217 71 ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLEL 149 (396)
Q Consensus 71 ~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~~~~~~ 149 (396)
++++..++|+|||||++|.++|..++..+|+++||||+.+|..+||++|+.++..++++++||++||||++++ ++.++.
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~ 179 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDE 179 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888888999999864 345666
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEecccccccC-----CCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeC
Q psy15217 150 VEIEIRELLNKYEFPGNDIPIIKGSAKLALEG-----DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSIS 224 (396)
Q Consensus 150 i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~-----~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~ 224 (396)
+..++..+++.+++ ...+++|+||++|.+. ..+||.+ .+|+++|.. ++.|.+..++||+++|+++++..
T Consensus 180 i~~~i~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~~~~wy~g---~tL~~~l~~-~~~~~~~~~~p~r~~i~~v~~~~ 253 (632)
T PRK05506 180 IVADYRAFAAKLGL--HDVTFIPISALKGDNVVTRSARMPWYEG---PSLLEHLET-VEIASDRNLKDFRFPVQYVNRPN 253 (632)
T ss_pred HHHHHHHHHHHcCC--CCccEEEEecccCCCccccccCCCcccH---hHHHHHHhc-CCCCCCcCCCCceeeEEEEEecC
Confidence 77788888888887 4578999999998763 2479965 467777766 45566668899999999998754
Q ss_pred CCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCC-Cc
Q psy15217 225 GRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI-KP 303 (396)
Q Consensus 225 ~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~-~~ 303 (396)
..+..++|+|++|.|++||+|.++|.+ ..++|+||++++.++++|.|||+|+++|++ ..++++|+|||+++.+ +.
T Consensus 254 ~~~~g~~G~v~~G~l~~gd~v~i~P~~--~~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~~~~~~~ 329 (632)
T PRK05506 254 LDFRGFAGTVASGVVRPGDEVVVLPSG--KTSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARADNRPEV 329 (632)
T ss_pred CCceEEEEEEecceeecCCEEEEcCCC--ceEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecCCCCCcc
Confidence 322337899999999999999999854 679999999999999999999999999984 5689999999999754 45
Q ss_pred eeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEcc-----------CCcccccCCCEEEEEEEecceeecc
Q psy15217 304 HKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-----------KNKEMVMPGDNVLITVRLINPIAME 372 (396)
Q Consensus 304 ~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----------~~~~~l~~g~~~~v~~~~~~p~~~~ 372 (396)
++.|+|++.||+++ ++.+||++++|+|+.+++|++... .++.+|++|+.+.|+|++.+|+|++
T Consensus 330 ~~~f~a~i~~l~~~------~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~~~p~~l~~g~~~~v~l~~~~pi~~e 403 (632)
T PRK05506 330 ADQFDATVVWMAEE------PLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLERLAAKTLELNEIGRCNLSTDAPIAFD 403 (632)
T ss_pred eeEEEEEEEEeccc------ccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCccCCcceeCCCCEEEEEEEECCEEeee
Confidence 78999999999864 678999999999999999998633 2467899999999999999999999
Q ss_pred cC------CeEEEE--eCCcEEEEEEEeeec
Q psy15217 373 EG------LRFAIR--EGGRTVGAGVVVKII 395 (396)
Q Consensus 373 ~~------~r~~lr--~~~~t~~~G~i~~v~ 395 (396)
.+ +||+|| ++|+|+|+|.|++..
T Consensus 404 ~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~ 434 (632)
T PRK05506 404 PYARNRTTGSFILIDRLTNATVGAGMIDFAL 434 (632)
T ss_pred eccccccCceEEEEeccCCceEEEEEECccc
Confidence 87 579995 489999999998754
No 22
>KOG0463|consensus
Probab=100.00 E-value=4.6e-63 Score=444.93 Aligned_cols=363 Identities=25% Similarity=0.357 Sum_probs=315.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeE--E-------------------
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE--Y------------------- 70 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~--~------------------- 70 (396)
..+++++|++|+|||||++.|++...+++++.++.. +.++++|.+.|.|.++..-. |
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqk--LFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQK--LFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHH--HhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 579999999999999999999999999998887654 88999999999997753221 1
Q ss_pred ----eeCCeeEEEEecCChhhhHHHHHhhhh--cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHH
Q psy15217 71 ----ETKARHYAHVDCPGHADYIKNMITGAA--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE 144 (396)
Q Consensus 71 ----~~~~~~~~iiDtpG~~~~~~~~~~~~~--~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~ 144 (396)
+...+.++|||.+||++|+++++.|++ .+|+.+|+|.|+.|+.++|+||+.++.++.+|.++| ++|+|+++++
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvV-VTKIDMCPAN 289 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVV-VTKIDMCPAN 289 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEE-EEeeccCcHH
Confidence 223567899999999999999999988 589999999999999999999999999999997775 6999999985
Q ss_pred HHHHHHHHHHHHHHhhcCCC---------------------CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 145 ELLELVEIEIRELLNKYEFP---------------------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 145 ~~~~~i~~~~~~~l~~~~~~---------------------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
-..|.++ .+..+++.-+.. ...+|++.+|..+| .++ +||..+.+.++
T Consensus 290 iLqEtmK-ll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG----------~NL-~LLkmFLNlls 357 (641)
T KOG0463|consen 290 ILQETMK-LLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTG----------TNL-PLLKMFLNLLS 357 (641)
T ss_pred HHHHHHH-HHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccC----------CCh-HHHHHHHhhcC
Confidence 5544444 577777764432 13468888888886 344 56676666665
Q ss_pred C-CCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecC--CceeEEEEEEEecceeeCeeecCCeEEEE
Q psy15217 204 T-PNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK--DTVKTTCTGVEMFRKLLDQGQAGDNIGLL 280 (396)
Q Consensus 204 ~-~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~--~~~~~~v~si~~~~~~~~~a~~G~~v~l~ 280 (396)
. .....+.|..|.|+++|.++|+|+|+.|+..+|+++.+|.+.++|.. ++.+..||||++.+-++..+++||.+.++
T Consensus 358 ~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQtASFA 437 (641)
T KOG0463|consen 358 LRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQTASFA 437 (641)
T ss_pred cccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEeccchhhhH
Confidence 3 23356789999999999999999999999999999999999999863 46889999999999999999999999999
Q ss_pred ecccCccCCCCCeEEecCC-CCCceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEccCCcccccCCCEE
Q psy15217 281 LRGTKREDVERGQVLAKPG-SIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNV 359 (396)
Q Consensus 281 l~~~~~~~i~~G~vl~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~ 359 (396)
|+.+++.++++|||+++++ .|.++|.|+|+|.+|+|| +.|.+.||.++|||+++|+|++ +.+++++|++||.+
T Consensus 438 LKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILVLHHP-----TTIsprYQAMvHcGSiRQTAti-vsM~kdcLRTGDka 511 (641)
T KOG0463|consen 438 LKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILVLHHP-----TTISPRYQAMVHCGSIRQTATI-VSMGKDCLRTGDKA 511 (641)
T ss_pred hhhcchhhhhcceEEecCCCCcceeeEEeeeEEEEecC-----CccCcchhheeeeccccceeee-eecChhhhhcCCcc
Confidence 9999999999999999998 577889999999999998 7999999999999999999999 47889999999999
Q ss_pred EEEEEec-ceeecccCCeEEEEeCCcEEEEEEEeeecC
Q psy15217 360 LITVRLI-NPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 360 ~v~~~~~-~p~~~~~~~r~~lr~~~~t~~~G~i~~v~~ 396 (396)
.|+|+|. +|+|+++|+|++||+ |||.|+|.|+++++
T Consensus 512 ~V~FrFIkqPEYir~gqrlVFRE-GRTKAVGti~~~lp 548 (641)
T KOG0463|consen 512 KVQFRFIKQPEYIRPGQRLVFRE-GRTKAVGTISSVLP 548 (641)
T ss_pred eEEEEEecCcceecCCceEEeec-ccceeeeeeccccc
Confidence 9999997 899999999999998 79999999998763
No 23
>KOG0459|consensus
Probab=100.00 E-value=4.2e-62 Score=442.62 Aligned_cols=375 Identities=29% Similarity=0.431 Sum_probs=329.7
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhh---------------hhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATV---------------LSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK 73 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~---------------~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~ 73 (396)
.+.++|++++||+|+||||+-++++.. ..+.++.+....|+||...+||++|.|+.....+|++.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 478999999999999999999987522 12334555666789999999999999999999999999
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCC-------hhHHHHHHHHHHcCCCeEEEEEeccCCC--CH-
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMV--DD- 143 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~D~~--~~- 143 (396)
.+.++++|+|||..|.++|+.|+++||.++||++|..|.+ +||+||..+++.+++.++||++||||-. +|
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 9999999999999999999999999999999999987654 6999999999999999999999999965 45
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC-CCCeEEEecccccccC------CCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEE
Q psy15217 144 EELLELVEIEIRELLNKYEFPG-NDIPIIKGSAKLALEG------DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLP 216 (396)
Q Consensus 144 ~~~~~~i~~~~~~~l~~~~~~~-~~~~~i~~Sa~~g~~~------~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~ 216 (396)
++++++++.++..+|..+++++ .+..++|+|+.+|.+. ..+||.++ .+++.+++ +|...|..+.|++++
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp---~fl~~ld~-l~~~~R~~~GP~~~p 311 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGP---IFLEYLDE-LPHLERILNGPIRCP 311 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCC---ccceehhc-cCcccccCCCCEEee
Confidence 5788999999999999998865 4567899999998762 35899776 55666666 788889999999999
Q ss_pred EEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEe
Q psy15217 217 VEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296 (396)
Q Consensus 217 i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 296 (396)
|.+-|+ ..|||+.|+|+||.+++||.+.++|.+ ..+.|.+|.....+++.+.||+++-|.|+|++.+++..|.|||
T Consensus 312 I~~Kyk--dmGTvv~GKvEsGsi~kg~~lvvMPnk--~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~ 387 (501)
T KOG0459|consen 312 VANKYK--DMGTVVGGKVESGSIKKGQQLVVMPNK--TNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILC 387 (501)
T ss_pred hhhhcc--ccceEEEEEecccceecCCeEEEccCC--cceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEe
Confidence 998886 478999999999999999999999854 6788999999989999999999999999999999999999999
Q ss_pred cCCCCCc-eeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEcc------------CCcccccCCCEEEEEE
Q psy15217 297 KPGSIKP-HKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP------------KNKEMVMPGDNVLITV 363 (396)
Q Consensus 297 ~~~~~~~-~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~~~l~~g~~~~v~~ 363 (396)
+++++.. .+.|.|+|.+++|. +-|.+||.+++|+|+.--.+.|.++ +.+.+++.|+.+.+++
T Consensus 388 ~~~n~~~s~~~F~aqi~IlE~~-----sIi~~GY~~VlHIht~ieEv~i~li~~idkktg~ksKkrprFvkq~~~~iarl 462 (501)
T KOG0459|consen 388 SPNNPCKSGRTFDAQIVILEHK-----SIICAGYSCVLHIHTAVEEVEIKLIHLIDKKTGEKSKKRPRFVKQGQKCIARL 462 (501)
T ss_pred cCCCccccccEEEEEEEEEecC-----ceeccCcceEeeeeeehhheeeeeeeeecccccccccCCCeeecCCcEEEEEE
Confidence 9998755 58999999999996 4688999999999998766665432 2467899999999999
Q ss_pred EecceeecccC------CeEEEEeCCcEEEEEEEeeecC
Q psy15217 364 RLINPIAMEEG------LRFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 364 ~~~~p~~~~~~------~r~~lr~~~~t~~~G~i~~v~~ 396 (396)
+...|+|++.+ +||.|||.|.|||+|+|+++++
T Consensus 463 ~t~~~iCle~fkd~pqmgRFtLRdegkTIAiGkV~kv~~ 501 (501)
T KOG0459|consen 463 ETEGPICLETFKDYPQMGRFTLRDEGKTIAIGKVLKVVE 501 (501)
T ss_pred ecCCcEehhhcccchhhcceEEecCCcEEEEEEEEeecC
Confidence 99999999975 7999999999999999999875
No 24
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=5.4e-59 Score=450.78 Aligned_cols=353 Identities=33% Similarity=0.516 Sum_probs=297.2
Q ss_pred cccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee------------
Q psy15217 5 KFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET------------ 72 (396)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~------------ 72 (396)
.|++.++++||+++||+|||||||+++|++. .+|.+++|++||+|++..+..++.
T Consensus 2 ~~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~-------------~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~ 68 (411)
T PRK04000 2 MWEKVQPEVNIGMVGHVDHGKTTLVQALTGV-------------WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAY 68 (411)
T ss_pred CcccCCCcEEEEEEccCCCCHHHHHHHhhCe-------------ecccCHhHHhcCcEEEecccccccccccccCccccc
Confidence 5788899999999999999999999999542 379999999999999976533221
Q ss_pred --C------------CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHcCCCeEEEEEec
Q psy15217 73 --K------------ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVPYIVVFLNK 137 (396)
Q Consensus 73 --~------------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~~ip~iIvviNK 137 (396)
. .+.++|||||||++|..++..++..+|++++|+|+.++. ..++.+++..+..++++.+++++||
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK 148 (411)
T PRK04000 69 TTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNK 148 (411)
T ss_pred cccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEe
Confidence 1 257899999999999999999999999999999999987 7999999999999998877888999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEE
Q psy15217 138 ADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPV 217 (396)
Q Consensus 138 ~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i 217 (396)
+|+.++++..+ ..+++..+++... ....|++++||+++ .++++|+++|.+.++.|.++.++|++++|
T Consensus 149 ~Dl~~~~~~~~-~~~~i~~~l~~~~--~~~~~ii~vSA~~g----------~gI~~L~~~L~~~l~~~~~~~~~~~r~~I 215 (411)
T PRK04000 149 IDLVSKERALE-NYEQIKEFVKGTV--AENAPIIPVSALHK----------VNIDALIEAIEEEIPTPERDLDKPPRMYV 215 (411)
T ss_pred eccccchhHHH-HHHHHHHHhcccc--CCCCeEEEEECCCC----------cCHHHHHHHHHHhCCCCCCCCCCCceEEE
Confidence 99987543322 2234555555322 13578999999997 58999999999988888888899999999
Q ss_pred EEEEeeCC--------CceEEEEEEEeeEEecCCEEEEeecCC----------ceeEEEEEEEecceeeCeeecCCeEEE
Q psy15217 218 EDVFSISG--------RGTVVTGRVERGIVRVGEELEIIGIKD----------TVKTTCTGVEMFRKLLDQGQAGDNIGL 279 (396)
Q Consensus 218 ~~~~~~~~--------~G~v~~g~v~~G~l~~g~~v~~~p~~~----------~~~~~v~si~~~~~~~~~a~~G~~v~l 279 (396)
+++|.+.+ +|+|++|+|.+|.+++||.|.++|.+. ...++|+||++++.++++|.|||+|++
T Consensus 216 ~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i 295 (411)
T PRK04000 216 ARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGV 295 (411)
T ss_pred EeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEEE
Confidence 99998865 467999999999999999999998642 125799999999999999999999999
Q ss_pred Eec---ccCccCCCCCeEEecCCCCC-ceeEEEEEEEEeecCCCCC----CcccccCceeEEEEEeeEEEEEEEccCCcc
Q psy15217 280 LLR---GTKREDVERGQVLAKPGSIK-PHKHFTGEIYALSKDEGGR----HTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351 (396)
Q Consensus 280 ~l~---~~~~~~i~~G~vl~~~~~~~-~~~~f~a~v~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~ 351 (396)
+|+ ++++.++++|+||++++.++ .+++|+|++.|+++.++++ .++|.+||++++|+|+.+++|++...+
T Consensus 296 ~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~i~--- 372 (411)
T PRK04000 296 GTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIKTGEPLMLNVGTATTVGVVTSAR--- 372 (411)
T ss_pred EeccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCCCCCEEEEEEeccEEEEEEEEcC---
Confidence 996 67778999999999997654 4689999999999732211 368999999999999999999997654
Q ss_pred cccCCCEEEEEEEecceeecccCCeEEE--EeCC--cEEEEEEEe
Q psy15217 352 MVMPGDNVLITVRLINPIAMEEGLRFAI--REGG--RTVGAGVVV 392 (396)
Q Consensus 352 ~l~~g~~~~v~~~~~~p~~~~~~~r~~l--r~~~--~t~~~G~i~ 392 (396)
++ .++++|.+|+|+++|+||+| |+++ |++|+|.|.
T Consensus 373 ----~~--~~~~~l~~p~~~~~g~r~~~~~~~~~~~~~~~~~~~~ 411 (411)
T PRK04000 373 ----KD--EAEVKLKRPVCAEEGDRVAISRRVGGRWRLIGYGIIK 411 (411)
T ss_pred ----Cc--EEEEEECCcEecCCCCEEEEEEecCCcEEEEEEEEeC
Confidence 34 57888999999999999999 7877 999999873
No 25
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=3.6e-58 Score=445.59 Aligned_cols=347 Identities=35% Similarity=0.537 Sum_probs=293.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEe--------------e---
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE--------------T--- 72 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~--------------~--- 72 (396)
+++++|+++||+|||||||+++|++. .+|.+++|++||+|++..+..++ +
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~-------------~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPV 68 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCe-------------ecccCHhHHHcCceeEecccccccccccccCcccccccccc
Confidence 57899999999999999999999642 37899999999999998755432 1
Q ss_pred ---------CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHcCCCeEEEEEeccCCCC
Q psy15217 73 ---------KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVPYIVVFLNKADMVD 142 (396)
Q Consensus 73 ---------~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~~ip~iIvviNK~D~~~ 142 (396)
..+.++|||||||++|.++|..++..+|++++|+|++++. ..|+++|+..+..+++++++|++||+|+.+
T Consensus 69 ~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 69 CPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS 148 (406)
T ss_pred ccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence 1367899999999999999999999999999999999988 899999999999999988888899999987
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEe
Q psy15217 143 DEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFS 222 (396)
Q Consensus 143 ~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~ 222 (396)
++...+. .+++.++++... ...+|++++||++| .++++|+++|...+|.|.++.+.|++|+|+++|.
T Consensus 149 ~~~~~~~-~~~i~~~l~~~~--~~~~~ii~vSA~~g----------~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~ 215 (406)
T TIGR03680 149 KEKALEN-YEEIKEFVKGTV--AENAPIIPVSALHN----------ANIDALLEAIEKFIPTPERDLDKPPLMYVARSFD 215 (406)
T ss_pred HHHHHHH-HHHHHhhhhhcc--cCCCeEEEEECCCC----------CChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEe
Confidence 6433222 235555655432 23579999999997 5899999999998888888889999999999998
Q ss_pred eCC--------CceEEEEEEEeeEEecCCEEEEeecCC----------ceeEEEEEEEecceeeCeeecCCeEEEEec--
Q psy15217 223 ISG--------RGTVVTGRVERGIVRVGEELEIIGIKD----------TVKTTCTGVEMFRKLLDQGQAGDNIGLLLR-- 282 (396)
Q Consensus 223 ~~~--------~G~v~~g~v~~G~l~~g~~v~~~p~~~----------~~~~~v~si~~~~~~~~~a~~G~~v~l~l~-- 282 (396)
+.+ +|+|++|+|.+|.|++||.|.++|... ...++|+||++++.++++|.|||+|+++|+
T Consensus 216 v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~ 295 (406)
T TIGR03680 216 VNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLD 295 (406)
T ss_pred ecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccC
Confidence 766 567999999999999999999998631 135799999999999999999999999984
Q ss_pred -ccCccCCCCCeEEecCCCC-CceeEEEEEEEEeecCCC----CCCcccccCceeEEEEEeeEEEEEEEccCCcccccCC
Q psy15217 283 -GTKREDVERGQVLAKPGSI-KPHKHFTGEIYALSKDEG----GRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPG 356 (396)
Q Consensus 283 -~~~~~~i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~----~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g 356 (396)
+++..++++||+|++++.+ +.++.|+|++.||.+..+ .+.++|.+||++++|+|+.++.|++...++
T Consensus 296 ~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~g~~~~l~~gt~~~~~~v~~~~~------- 368 (406)
T TIGR03680 296 PALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKTGEVLMLNVGTATTVGVVTSARK------- 368 (406)
T ss_pred CCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCCCCEEEEEEccceEEEEEEEcCC-------
Confidence 6778899999999999754 446899999999987421 123689999999999999999999975542
Q ss_pred CEEEEEEEecceeecccCCeEEE--EeCC--cEEEEEEE
Q psy15217 357 DNVLITVRLINPIAMEEGLRFAI--REGG--RTVGAGVV 391 (396)
Q Consensus 357 ~~~~v~~~~~~p~~~~~~~r~~l--r~~~--~t~~~G~i 391 (396)
+ .++++|.+|+|+.+|+||+| |.++ +++|+|.|
T Consensus 369 ~--~~~l~l~~p~~~~~g~r~~~~~~~~~~~~~~g~g~~ 405 (406)
T TIGR03680 369 D--EIEVKLKRPVCAEEGDRVAISRRVGGRWRLIGYGII 405 (406)
T ss_pred c--EEEEEECCcEEcCCCCEEEEEEecCCceEEEEEEEe
Confidence 3 47888999999999999998 5655 89999987
No 26
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=3.9e-58 Score=462.09 Aligned_cols=336 Identities=31% Similarity=0.513 Sum_probs=293.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee-CCeeEEEEecCChhhhHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~ 91 (396)
+.|+++||+|||||||+++|++. .+|+.++|+++|+|++..+..+.. ++..+.|||||||++|.++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~-------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~ 67 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGV-------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSN 67 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-------------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHH
Confidence 36899999999999999999863 268889999999999998887765 4567899999999999999
Q ss_pred HHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15217 92 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 171 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i 171 (396)
|..++..+|++++|||+++|..+||++|+.++..+++|++|||+||+|+++. +.++.+..++.++++..++ ...|++
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~-~~~~~v~~ei~~~l~~~~~--~~~~ii 144 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE-ARIAEVRRQVKAVLREYGF--AEAKLF 144 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCH-HHHHHHHHHHHHHHHhcCC--CCCcEE
Confidence 9999999999999999999999999999999999999988888999999875 3445566678888877766 357899
Q ss_pred EecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecC
Q psy15217 172 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK 251 (396)
Q Consensus 172 ~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~ 251 (396)
++||++| .|+++|+++|... +.+.++.+.||+|+|+++|.++|.|+|++|+|.+|++++||+|.+.|.
T Consensus 145 ~VSA~tG----------~gI~~L~~~L~~~-~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~- 212 (614)
T PRK10512 145 VTAATEG----------RGIDALREHLLQL-PEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGV- 212 (614)
T ss_pred EEeCCCC----------CCCHHHHHHHHHh-hccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCC-
Confidence 9999998 5899999999874 445556789999999999999999999999999999999999999874
Q ss_pred CceeEEEEEEEecceeeCeeecCCeEEEEecc-cCccCCCCCeEEecCCCCCceeEEEEEEEEeecCCCCCCcccccCce
Q psy15217 252 DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRG-TKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYR 330 (396)
Q Consensus 252 ~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~-~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~ 330 (396)
+..++|+|||.++.++++|.|||+|+++|++ ++..++++||+|++++++.++..+.+ ++... .+++.|++
T Consensus 213 -~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~~~~~~~~~~~---~l~~~-----~~l~~~~~ 283 (614)
T PRK10512 213 -NKPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADAPPEPFTRVIV---ELQTH-----TPLTQWQP 283 (614)
T ss_pred -CCcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCCCCccceeEEE---EEcCC-----ccCCCCCE
Confidence 3678999999999999999999999999997 88899999999998876666655543 44443 47999999
Q ss_pred eEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEEEe--CCcEEEEEEEeee
Q psy15217 331 PQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIRE--GGRTVGAGVVVKI 394 (396)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~--~~~t~~~G~i~~v 394 (396)
+++|+|+.++.|++... +.+.+++++++|+++..|+||+||+ ..+|+|+|.|+.+
T Consensus 284 ~~~~~gt~~~~~~i~~l---------~~~~~~l~l~~p~~~~~gdr~ilr~~s~~~tigGg~Vld~ 340 (614)
T PRK10512 284 LHIHHAASHVTGRVSLL---------EDNLAELVLDTPLWLADNDRLVLRDISARNTLAGARVVML 340 (614)
T ss_pred EEEEEcccEEEEEEEEc---------CCeEEEEEECCcccccCCCEEEEEeCCCCEEEEEEEEccc
Confidence 99999999999999755 2357999999999999999999998 4589999999875
No 27
>KOG1143|consensus
Probab=100.00 E-value=2.4e-56 Score=401.08 Aligned_cols=363 Identities=25% Similarity=0.343 Sum_probs=316.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEE---------------------
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY--------------------- 70 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~--------------------- 70 (396)
.++++++|..|+|||||++.|++...+++++.++.+ +.++++|...|.|.++++-.+
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln--~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLN--IFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeee--hhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 579999999999999999999999999999888765 889999999999987764322
Q ss_pred eeCCeeEEEEecCChhhhHHHHHhhhh--cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHH
Q psy15217 71 ETKARHYAHVDCPGHADYIKNMITGAA--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLE 148 (396)
Q Consensus 71 ~~~~~~~~iiDtpG~~~~~~~~~~~~~--~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~ 148 (396)
+...+-++|+|.+||.+|.++++.+++ .+|+|+|||+|+.|....|+||+.++.++++|.+++ ++|||++++... +
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvl-vtK~Dl~~~~~~-~ 322 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVL-VTKMDLVDRQGL-K 322 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEE-EEeeccccchhH-H
Confidence 224567899999999999999999987 579999999999999999999999999999997775 699999997443 3
Q ss_pred HHHHHHHHHHhhcCCC---------------------CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC
Q psy15217 149 LVEIEIRELLNKYEFP---------------------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR 207 (396)
Q Consensus 149 ~i~~~~~~~l~~~~~~---------------------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~ 207 (396)
...+++.+++++.|.. ++.+|++.+|+..| +++ .|+..+.+.+++...
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsG----------egl-~ll~~fLn~Lsp~~~ 391 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSG----------EGL-RLLRTFLNCLSPAGT 391 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCc----------cch-hHHHHHHhhcCCcCC
Confidence 4445788888877653 34578888998887 455 455555555654322
Q ss_pred C------CCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCC--ceeEEEEEEEecceeeCeeecCCeEEE
Q psy15217 208 A------IDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD--TVKTTCTGVEMFRKLLDQGQAGDNIGL 279 (396)
Q Consensus 208 ~------~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~--~~~~~v~si~~~~~~~~~a~~G~~v~l 279 (396)
. ...|..|.|+++|+++.+|.|+.|.+.+|.++.|+.+.++|.++ +.+.+|.||++++.++..++|||.+++
T Consensus 392 ~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaAsl 471 (591)
T KOG1143|consen 392 AEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAASL 471 (591)
T ss_pred hHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeeccccceeeecCccceee
Confidence 2 34778899999999999999999999999999999999998765 578999999999999999999999999
Q ss_pred EecccCccCCCCCeEEecCC-CCCceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEccCCcccccCCCE
Q psy15217 280 LLRGTKREDVERGQVLAKPG-SIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDN 358 (396)
Q Consensus 280 ~l~~~~~~~i~~G~vl~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~ 358 (396)
.|...+...+|+|||+..++ +|+.+..|+|++.+|-|. +.|..|||.++|+|+++|+|.|+-+.+.++|++|++
T Consensus 472 sl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~lLfHa-----T~i~~GFQ~TVhiGsvrqTAvi~~I~~~d~lrtg~~ 546 (591)
T KOG1143|consen 472 SLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANLLLLFHA-----TYICEGFQATVHIGSVRQTAVITHIDDADCLRTGKW 546 (591)
T ss_pred eccCCCccchhcceEEeecCCCCceEEEEeeeehhhhhh-----HhheecceEEEEEcceeeeeeeeeecccccccCCce
Confidence 99877778899999999886 677789999999999885 789999999999999999999998999999999999
Q ss_pred EEEEEEec-ceeecccCCeEEEEeCCcEEEEEEEeeec
Q psy15217 359 VLITVRLI-NPIAMEEGLRFAIREGGRTVGAGVVVKII 395 (396)
Q Consensus 359 ~~v~~~~~-~p~~~~~~~r~~lr~~~~t~~~G~i~~v~ 395 (396)
|.|.|+|. +|+|+++|.+++||+ |.|+|+|.|++|-
T Consensus 547 AvV~f~F~~hPEyir~G~~ilfRe-G~tKGiG~Vt~Vf 583 (591)
T KOG1143|consen 547 AVVKFCFAYHPEYIREGSPILFRE-GKTKGIGEVTKVF 583 (591)
T ss_pred EEEEEEecCCchhccCCCeeeeec-ccccccceEEEEE
Confidence 99999986 999999999999998 6999999999874
No 28
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=2.8e-54 Score=433.25 Aligned_cols=334 Identities=30% Similarity=0.499 Sum_probs=285.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 92 (396)
++|+++||+|||||||+++|++.. .|..++|+.+|+|++..+..+++++..+.|||||||++|.++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~-------------~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~ 67 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIA-------------ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNA 67 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc-------------CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHH
Confidence 479999999999999999998531 5778889999999999988888888999999999999999999
Q ss_pred HhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15217 93 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 172 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~ 172 (396)
..++..+|++++|+|+++|.++||++|+..+..+++|++||++||||+++.+ .++.+.+++.++++..++. ...|+++
T Consensus 68 ~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~-~~~~~~~ei~~~l~~~~~~-~~~~ii~ 145 (581)
T TIGR00475 68 IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEE-EIKRTEMFMKQILNSYIFL-KNAKIFK 145 (581)
T ss_pred HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHH-HHHHHHHHHHHHHHHhCCC-CCCcEEE
Confidence 9999999999999999999999999999999999999888889999999863 3445566788888776652 2579999
Q ss_pred ecccccccCCCCCCCCCcHHHHHHHhhhhCCCC-CCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecC
Q psy15217 173 GSAKLALEGDTGPLGEQSILSLSKALDTYIPTP-NRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK 251 (396)
Q Consensus 173 ~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~-~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~ 251 (396)
+||++| .|+.++++++...++.. ....+.||+|+|+++|.++|.|+|++|+|.+|++++||+|.++|.+
T Consensus 146 vSA~tG----------~GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~ 215 (581)
T TIGR00475 146 TSAKTG----------QGIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPIN 215 (581)
T ss_pred EeCCCC----------CCchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCC
Confidence 999998 47777777776544321 1125789999999999999999999999999999999999999854
Q ss_pred CceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCCCc--eeEEEEEEEEeecCCCCCCcccccCc
Q psy15217 252 DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKP--HKHFTGEIYALSKDEGGRHTPFFSNY 329 (396)
Q Consensus 252 ~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~--~~~f~a~v~~l~~~~~~~~~~i~~g~ 329 (396)
..++|++||.+++++++|.|||+|+++|++++..++++|++++++..+.. ...|.+ . .++.+|+
T Consensus 216 --~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~~~~~~~~~~~-------~-----~~l~~~~ 281 (581)
T TIGR00475 216 --HEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDPKLRVVVKFIA-------E-----VPLLELQ 281 (581)
T ss_pred --ceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCCCceEEEEEEc-------C-----CccCCCC
Confidence 67999999999999999999999999999999999999988876643211 233333 1 3788899
Q ss_pred eeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEEEeC-CcEEEEEEEeee
Q psy15217 330 RPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG-GRTVGAGVVVKI 394 (396)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~-~~t~~~G~i~~v 394 (396)
++.+|+|+.++.|++...++. .+++++.+|+++..|+||++|++ .+|+|+|.|+..
T Consensus 282 ~~~~~~gt~~~~~~i~~l~~~---------~~~l~l~~P~~~~~gd~~i~r~~~~~tiggg~vl~~ 338 (581)
T TIGR00475 282 PYHIAHGMSVTTGKISLLDKG---------IALLTLDAPLILAKGDKLVLRDSSGNFLAGARVLEP 338 (581)
T ss_pred eEEEEEeceEEEEEEEEccCc---------EEEEEECCceecCCCCEEEEEeCCCEEEeeeEEecC
Confidence 999999999999999755421 67899999999999999999994 389999999853
No 29
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-54 Score=398.80 Aligned_cols=335 Identities=30% Similarity=0.493 Sum_probs=290.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 92 (396)
+.|+.+||+|+|||||+..|++. ..|.+++|..||+|+|..+++++.+++.+.|+|+|||++|+++|
T Consensus 1 mii~t~GhidHgkT~L~~altg~-------------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~m 67 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGG-------------VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNL 67 (447)
T ss_pred CeEEEeeeeeccchhhhhhhccc-------------ccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHH
Confidence 36899999999999999999875 47899999999999999999999999999999999999999999
Q ss_pred HhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15217 93 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 172 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~ 172 (396)
+.++...|+++||||+++|++.||.||+..+..+|+++.++|+||+|++++.+ .+. .++++++.+.+ .+.++++
T Consensus 68 iag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r-~e~---~i~~Il~~l~l--~~~~i~~ 141 (447)
T COG3276 68 LAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEAR-IEQ---KIKQILADLSL--ANAKIFK 141 (447)
T ss_pred HhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHH-HHH---HHHHHHhhccc--ccccccc
Confidence 99999999999999999999999999999999999999888999999998743 333 33444444444 4678999
Q ss_pred ecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCC
Q psy15217 173 GSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD 252 (396)
Q Consensus 173 ~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~ 252 (396)
+|+.+| +|+++|-+.|.+....+.++.+.||+++|++.|.++|.|||++|++.||.+++||++++.|.+
T Consensus 142 ~s~~~g----------~GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~- 210 (447)
T COG3276 142 TSAKTG----------RGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPIN- 210 (447)
T ss_pred cccccC----------CCHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCC-
Confidence 999997 699999999998654567889999999999999999999999999999999999999999865
Q ss_pred ceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCCCceeEEEEEEEEeecCCCCCCcccccCceeE
Q psy15217 253 TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQ 332 (396)
Q Consensus 253 ~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~ 332 (396)
.+++|+|||.++.++++|.||++|+++|+|++.+++.||++|+++++.++++.|.+.+.|.... ..++..+...+
T Consensus 211 -k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~~~~v~~~~~~~~~i~~~~----~~~l~~~~~~h 285 (447)
T COG3276 211 -KEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPLEVTTRLIVELEIDPLF----KKTLKQGQPVH 285 (447)
T ss_pred -CeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCCCCCcceEEEEEEEecccc----ccccCCCceEE
Confidence 7899999999999999999999999999999999999999999999888899999999886543 25789999999
Q ss_pred EEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEEEeCC--cEEEEEEEe
Q psy15217 333 FYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGG--RTVGAGVVV 392 (396)
Q Consensus 333 ~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~~--~t~~~G~i~ 392 (396)
+|+|..+.+|++...+.. .++-+..|+....+++++||++. .+.+.+.|+
T Consensus 286 i~~g~~~~~~~i~~l~~~----------~~l~~~k~i~~~~~~~l~lr~~~a~~~~~g~rvl 337 (447)
T COG3276 286 IHVGLRSVTGRIVPLEKN----------AELNLVKPIALGDNDRLVLRDNSAVIKLAGARVL 337 (447)
T ss_pred EEEeccccceEeeecccc----------ceeeeecccccccCceEEEEcccceeeeccceEE
Confidence 999999999999754432 45666677777667777777642 344444444
No 30
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-49 Score=348.92 Aligned_cols=351 Identities=34% Similarity=0.535 Sum_probs=295.7
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEe--------------e-
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE--------------T- 72 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~--------------~- 72 (396)
..++.+||+++||+|||||||..+|++. +.|+|++|.+||+|+...|.... .
T Consensus 6 ~~Qp~vNIG~vGHVdHGKtTlv~AlsGv-------------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~ 72 (415)
T COG5257 6 HIQPEVNIGMVGHVDHGKTTLTKALSGV-------------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTE 72 (415)
T ss_pred cCCcceEeeeeeecccchhhheehhhce-------------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccC
Confidence 3478999999999999999999999875 58999999999999998764210 0
Q ss_pred -----------CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCC-CCChhHHHHHHHHHHcCCCeEEEEEeccCC
Q psy15217 73 -----------KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADM 140 (396)
Q Consensus 73 -----------~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~-g~~~qt~e~l~~~~~~~ip~iIvviNK~D~ 140 (396)
--+.++|+|+|||+-++.+|++|+...|+|+|||+|++ -+++||+|||..+.-+|++++|++-||+|+
T Consensus 73 ~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDl 152 (415)
T COG5257 73 PKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDL 152 (415)
T ss_pred CCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccce
Confidence 12578999999999999999999999999999999998 689999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEE
Q psy15217 141 VDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDV 220 (396)
Q Consensus 141 ~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~ 220 (396)
++.++..+..+ ++++|++..- .++.|++|+||..+ .+++.|+++|..++|.|.++.++|++|+|.++
T Consensus 153 V~~E~AlE~y~-qIk~FvkGt~--Ae~aPIIPiSA~~~----------~NIDal~e~i~~~IptP~rd~~~~p~m~v~RS 219 (415)
T COG5257 153 VSRERALENYE-QIKEFVKGTV--AENAPIIPISAQHK----------ANIDALIEAIEKYIPTPERDLDKPPRMYVARS 219 (415)
T ss_pred ecHHHHHHHHH-HHHHHhcccc--cCCCceeeehhhhc----------cCHHHHHHHHHHhCCCCccCCCCCceEEEEee
Confidence 99876666554 6888888543 47889999999987 58999999999999999999999999999999
Q ss_pred EeeCC--------CceEEEEEEEeeEEecCCEEEEeecC----C------ceeEEEEEEEecceeeCeeecCCeEEEEec
Q psy15217 221 FSISG--------RGTVVTGRVERGIVRVGEELEIIGIK----D------TVKTTCTGVEMFRKLLDQGQAGDNIGLLLR 282 (396)
Q Consensus 221 ~~~~~--------~G~v~~g~v~~G~l~~g~~v~~~p~~----~------~~~~~v~si~~~~~~~~~a~~G~~v~l~l~ 282 (396)
|.++. .|-|+.|.+.+|.|++||++.+.|.- + ..-++|.|++-....+++|.||-.+++--.
T Consensus 220 FDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~ 299 (415)
T COG5257 220 FDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGTK 299 (415)
T ss_pred cccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCCeeeeeccCCceEEEecc
Confidence 99864 45589999999999999999998731 1 133678899989999999999999999642
Q ss_pred ---ccCccCCCCCeEEecCCCCCc-eeEEEEEEEEeecCCC----CCCcccccCceeEEEEEeeEEEEEEEccCCccccc
Q psy15217 283 ---GTKREDVERGQVLAKPGSIKP-HKHFTGEIYALSKDEG----GRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVM 354 (396)
Q Consensus 283 ---~~~~~~i~~G~vl~~~~~~~~-~~~f~a~v~~l~~~~~----~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~ 354 (396)
.+.+.|--.|+|+..++.+++ .++|+.+...|..--+ .+-.+|+.|-..++.+|+...-+.++...+
T Consensus 300 lDP~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~~E~Lml~VGtatT~GvV~~~k~----- 374 (415)
T COG5257 300 LDPTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKTNEVLMLNVGTATTVGVVTSAKK----- 374 (415)
T ss_pred cCcchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCcccccccccccCCCeEEEEeecceeEEEEEEecC-----
Confidence 234567788999999987666 5799999999885322 123479999999999999988888864432
Q ss_pred CCCEEEEEEEecceeecccCCeEEE-Ee---CCcEEEEEEEee
Q psy15217 355 PGDNVLITVRLINPIAMEEGLRFAI-RE---GGRTVGAGVVVK 393 (396)
Q Consensus 355 ~g~~~~v~~~~~~p~~~~~~~r~~l-r~---~~~t~~~G~i~~ 393 (396)
| .+++.|.+|+|.+.|.|.++ |. -+|.+|+|.|.+
T Consensus 375 --d--~~ev~Lk~Pvcae~g~rvaisRri~~rWRLIG~G~ik~ 413 (415)
T COG5257 375 --D--EIEVKLKRPVCAEIGERVAISRRIGNRWRLIGYGTIKE 413 (415)
T ss_pred --c--eEEEEeccceecCCCCEEEEEeeecceEEEEeEEEEec
Confidence 2 57999999999999999987 32 258999999875
No 31
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=6.1e-42 Score=343.18 Aligned_cols=281 Identities=28% Similarity=0.390 Sum_probs=232.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 92 (396)
.||+++||+|||||||+++|+..............+.+|..+.|+++|+|+......+++.++.++|||||||.+|..++
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 58999999999999999999975432211111122479999999999999999988999999999999999999999999
Q ss_pred HhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC--CCCeE
Q psy15217 93 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG--NDIPI 170 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~--~~~~~ 170 (396)
.++++.+|+++||||+.+|.+.||++|+..+...++|.+ |++||||+.+.. ++.+..++.+++..++... ..+|+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~I-VviNKiD~~~a~--~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDRPSAR--PDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEE-EEEECCCCCCcC--HHHHHHHHHHHHHhhccccccccCcE
Confidence 999999999999999999999999999999999999965 568999997531 2334456667776555432 24799
Q ss_pred EEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeec
Q psy15217 171 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGI 250 (396)
Q Consensus 171 i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~ 250 (396)
+++||++|++..+.-....++..|++.+.+.+|+|..+.+.||+++|++++..++.|+++.|+|.+|+|++||.|.+.|.
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~ 238 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKR 238 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecC
Confidence 99999998653322112357899999999999999878889999999999999999999999999999999999999875
Q ss_pred CC-ceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeEEecCCC
Q psy15217 251 KD-TVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300 (396)
Q Consensus 251 ~~-~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~ 300 (396)
+. ..+.+|++|+.+ +.++++|.|||+|+++ ++ .++.+|++||+++.
T Consensus 239 ~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--gl--~~i~~Gdtl~~~~~ 289 (594)
T TIGR01394 239 DGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--GL--EDINIGETIADPEV 289 (594)
T ss_pred CCceeEEEEEEEEEccCCCceECCEECCCCEEEEe--CC--cccCCCCEEeCCCc
Confidence 33 246789999875 6799999999999884 54 57899999998764
No 32
>KOG0461|consensus
Probab=100.00 E-value=1e-40 Score=297.65 Aligned_cols=340 Identities=29% Similarity=0.481 Sum_probs=259.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee---------CCeeEEEEe
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET---------KARHYAHVD 81 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~---------~~~~~~iiD 81 (396)
-.+|++++||+|||||||..+|....+ ....|.++..++||+|.|..+..+.. +.-.++++|
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~S---------TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvD 76 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGS---------TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVD 76 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhcc---------chhhccCCcccccceeEeecceeeecccccccCccccceeEEEe
Confidence 468999999999999999999975421 12479999999999999987665532 334679999
Q ss_pred cCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHH---HHHHHHHHHHHHH
Q psy15217 82 CPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEE---LLELVEIEIRELL 158 (396)
Q Consensus 82 tpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~---~~~~i~~~~~~~l 158 (396)
+|||...+++.+.|+...|.+++|||+..|.+.||-||+.+...+..+ ++|++||+|..++.. ..+.....++.-|
T Consensus 77 CPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~k-lvvvinkid~lpE~qr~ski~k~~kk~~KtL 155 (522)
T KOG0461|consen 77 CPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKK-LVVVINKIDVLPENQRASKIEKSAKKVRKTL 155 (522)
T ss_pred CCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccc-eEEEEeccccccchhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888777655 666789999887633 3344555677778
Q ss_pred hhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeE
Q psy15217 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGI 238 (396)
Q Consensus 159 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~ 238 (396)
+..++. .+.|++++||..|. +..+.+.+|.++|.+.+-.|.|+.+.||.|.|+++|.++|.|+|.+|+|.+|.
T Consensus 156 e~t~f~-g~~PI~~vsa~~G~------~~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~ 228 (522)
T KOG0461|consen 156 ESTGFD-GNSPIVEVSAADGY------FKEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGV 228 (522)
T ss_pred HhcCcC-CCCceeEEecCCCc------cchhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeE
Confidence 888886 45799999999983 22467899999999989899999999999999999999999999999999999
Q ss_pred EecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCCCceeEEEEEEEEeecCC
Q psy15217 239 VRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDE 318 (396)
Q Consensus 239 l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~ 318 (396)
++.|+.|.+...+ .+-+|||+|+++.++.+|.+||++++++...+..-+.|| +++.++.+.+....-+.+--+.--
T Consensus 229 ~~ln~~iE~PAL~--e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klleRg-i~~~pg~Lk~~~avl~~vepI~yf- 304 (522)
T KOG0461|consen 229 LRLNTEIEFPALN--EKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLERG-ICGPPGTLKSTKAVLATVEPIQYF- 304 (522)
T ss_pred EecCcEEeecccc--hhhhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHhcc-ccCCCcccceeeeeeEeecchHHH-
Confidence 9999999985433 456899999999999999999999999998888888888 446566655543222222110000
Q ss_pred CCCCcccccCceeEEEEEeeEEEEEEEcc----------------------CCcccccCCCEEEEEEEecceeecccC
Q psy15217 319 GGRHTPFFSNYRPQFYFRTTDVTGSIELP----------------------KNKEMVMPGDNVLITVRLINPIAMEEG 374 (396)
Q Consensus 319 ~~~~~~i~~g~~~~~~~~~~~~~~~i~~~----------------------~~~~~l~~g~~~~v~~~~~~p~~~~~~ 374 (396)
..+|.......+-+|.-.+.+.+... .-|..+.++|...+-+.|++|+..-++
T Consensus 305 ---r~~i~sk~K~Hi~VgheTVMa~~~ff~d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~~aL~~FEkpv~~P~~ 379 (522)
T KOG0461|consen 305 ---RKSINSKSKIHIAVGHETVMAECQFFKDTDGTTSTFQLDKEYENGEFDMLPALLAPCDVIQALFSFEKPVFLPEY 379 (522)
T ss_pred ---hhhhhhcceEEEEehhhhhhhheEEeeccCCcccccccchhhhccccccChhhcCCchheeeeeeecccccCccc
Confidence 01233323333333333333333211 112345567777788888988877654
No 33
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=8.3e-39 Score=320.06 Aligned_cols=282 Identities=27% Similarity=0.342 Sum_probs=228.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
...||+++||+|||||||+++|+..............+.+|..+.|+++|+|+......+++++..+++||||||.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 46899999999999999999999743221111111125799999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC--CCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG--NDI 168 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~--~~~ 168 (396)
.+..+++.+|++++|+|+.+|...|++.++..+...++|.+ |++||+|+.+. .++.+..++.+++..++... ..+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD~~~a--~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVDRPGA--RPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcCCCCC--chhHHHHHHHHHHhccCccccccCC
Confidence 99999999999999999999999999999999999999965 56899998754 12334445666665544322 358
Q ss_pred eEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEe
Q psy15217 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEII 248 (396)
Q Consensus 169 ~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~ 248 (396)
|++++||.+|++....-....++..|++++..++|+|.++.++||+++|++++..++.|+++.|||.+|+|++||.|.+.
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~ 240 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTII 240 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEe
Confidence 99999999987532211112368899999999999998888899999999999999999999999999999999999987
Q ss_pred ecCC-ceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeEEecCC
Q psy15217 249 GIKD-TVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (396)
Q Consensus 249 p~~~-~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (396)
+.++ ..+.+|.+|... +.++++|.|||+|++ .++ .++..|++||+++
T Consensus 241 ~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~~GdTl~~~~ 292 (607)
T PRK10218 241 DSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI--TGL--GELNISDTVCDTQ 292 (607)
T ss_pred cCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEE--ECc--cccccCcEEecCC
Confidence 6422 235678787654 678999999999997 443 5688999999765
No 34
>KOG0462|consensus
Probab=100.00 E-value=5.6e-40 Score=309.10 Aligned_cols=331 Identities=26% Similarity=0.351 Sum_probs=249.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC---eeEEEEecCChh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA---RHYAHVDCPGHA 86 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~---~~~~iiDtpG~~ 86 (396)
....|++|+.|+|||||||..+|+........ ......+||....||+||+|+......+-+.+ +.+++||||||-
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~-~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDN-NIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCC-CCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence 34679999999999999999999987653221 22223469999999999999987655544444 788999999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
+|..+..+.+..+|++||||||++|++.||...+.++...|+. +|.|+||+|+..++ .+.++.++.+++. ++
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~-iIpVlNKIDlp~ad--pe~V~~q~~~lF~---~~-- 208 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLA-IIPVLNKIDLPSAD--PERVENQLFELFD---IP-- 208 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCe-EEEeeeccCCCCCC--HHHHHHHHHHHhc---CC--
Confidence 9999999999999999999999999999999999999999999 56678999998752 2334445555544 43
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEE
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELE 246 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~ 246 (396)
..+++.+||++|+ +++++|+++.+.+|+|....++||++.+.+++....+|.++.++|..|.+++||+|.
T Consensus 209 ~~~~i~vSAK~G~----------~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~ 278 (650)
T KOG0462|consen 209 PAEVIYVSAKTGL----------NVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQ 278 (650)
T ss_pred ccceEEEEeccCc----------cHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEE
Confidence 2479999999984 788999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCceeEEEEEEEecc-eeeCeeecCCeEEEEecccC-ccCCCCCeEEecCCCCCceeEEEEEEEEeecCCCCCCcc
Q psy15217 247 IIGIKDTVKTTCTGVEMFR-KLLDQGQAGDNIGLLLRGTK-REDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTP 324 (396)
Q Consensus 247 ~~p~~~~~~~~v~si~~~~-~~~~~a~~G~~v~l~l~~~~-~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~ 324 (396)
.+.....+.+++.++.... .++....||| ||.-+.++. ..+.+.|+++++.....+.. . -+
T Consensus 279 ~~~t~~~yev~~vgvm~p~~~~~~~l~agq-vGyIi~~mr~~~ea~IGdTi~~~~~~~~v~-------t---------l~ 341 (650)
T KOG0462|consen 279 SAATGKSYEVKVVGVMRPEMTPVVELDAGQ-VGYIICNMRNVKEAQIGDTIAHKSVTKAVE-------T---------LP 341 (650)
T ss_pred EeecCcceEeEEeEEeccCceeeeeecccc-cceeEecccccccccccceeeecccCcccC-------c---------CC
Confidence 9876666777777776654 4666677776 555555555 46788999998765211111 0 12
Q ss_pred cccCceeEEEEEeeEEEE--EEEccCCcccccCCCEEEEEEEecceeecccCCeE
Q psy15217 325 FFSNYRPQFYFRTTDVTG--SIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRF 377 (396)
Q Consensus 325 i~~g~~~~~~~~~~~~~~--~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~ 377 (396)
..+..+|++++|..-..+ ...+....+.|..+|.+ +.+..+.+-++..|.|+
T Consensus 342 ~~~~~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~s-v~v~~~~s~aLg~gwr~ 395 (650)
T KOG0462|consen 342 GFEPTKPMVFVGLFPLDGSDYETLRDAIERLVLNDES-VTVIKESSGALGQGWRL 395 (650)
T ss_pred CCCCCcceEEeccccCccchhhhHHHHHHHHhccccc-ceeeecCCcccccceEe
Confidence 333445677777543322 22222333456666664 66666666555555443
No 35
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-38 Score=293.67 Aligned_cols=283 Identities=28% Similarity=0.380 Sum_probs=234.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
+..||+|+.|+|||||||+..|+.+...-.......-..||....|++||+||-.......+++..++++|||||.+|-.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 46799999999999999999999764332222222223699999999999999888788889999999999999999999
Q ss_pred HHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC--CC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN--DI 168 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~--~~ 168 (396)
+..+.++..|.++|+|||.+|.++||+-.+..+.++|++.|+ |+||+|..++ +.+++..++-+++-.++-..+ ++
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIV-VvNKiDrp~A--rp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIV-VINKIDRPDA--RPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEE-EEeCCCCCCC--CHHHHHHHHHHHHHHhCCChhhCCC
Confidence 999999999999999999999999999999999999999776 5799999875 223455566677766665432 57
Q ss_pred eEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEe
Q psy15217 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEII 248 (396)
Q Consensus 169 ~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~ 248 (396)
|+++.||+.|+...++--...++..|++.|..++|.|..+.++||.|.|...-..++.|.+..|||.+|++++||.+.+.
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i 240 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALI 240 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEE
Confidence 99999999998755443334578899999999999999999999999998887788999999999999999999999987
Q ss_pred ecCC-ceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeEEecCCC
Q psy15217 249 GIKD-TVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300 (396)
Q Consensus 249 p~~~-~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~ 300 (396)
..++ ....+|..+.-+ +.++++|.|||+|++ .|+ .++..|+.+|+++.
T Consensus 241 ~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVai--aG~--~~~~igdTi~d~~~ 293 (603)
T COG1217 241 KSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAI--AGL--EDINIGDTICDPDN 293 (603)
T ss_pred cCCCcEEeeEEEeeeeccceeeeecccccccCEEEE--cCc--ccccccccccCCCC
Confidence 5433 244566665544 578999999999998 555 47889999998875
No 36
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.9e-39 Score=299.61 Aligned_cols=331 Identities=24% Similarity=0.325 Sum_probs=254.1
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee-----CCeeEEEEec
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-----KARHYAHVDC 82 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-----~~~~~~iiDt 82 (396)
+.+...|+.|+.|.|||||||..+|++........ ....+.+|....||+||+|+......+.+ +.+.+.+|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~R-em~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDT 83 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSER-EMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDT 83 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChH-HHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCC
Confidence 34567899999999999999999998764332211 12234699999999999999876554433 3467889999
Q ss_pred CChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 83 PGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 83 pG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
|||-+|.-+..+.+..|.+++|||||++|++.||....+++...+.. +|-|+||+|++.++ .+.++.++++.+ |
T Consensus 84 PGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~Le-IiPViNKIDLP~Ad--pervk~eIe~~i---G 157 (603)
T COG0481 84 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPAAD--PERVKQEIEDII---G 157 (603)
T ss_pred CCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcE-EEEeeecccCCCCC--HHHHHHHHHHHh---C
Confidence 99999999999999999999999999999999999999999999988 66679999998753 233445555544 5
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVG 242 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g 242 (396)
++. ...+.+||++| .|++++|+++.+.+|+|..+.++|++..|.|++..+..|.|+..||..|.+++|
T Consensus 158 id~--~dav~~SAKtG----------~gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~g 225 (603)
T COG0481 158 IDA--SDAVLVSAKTG----------IGIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKG 225 (603)
T ss_pred CCc--chheeEecccC----------CCHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCC
Confidence 643 34899999998 599999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeecCCceeEEEEEEEec-ceeeCeeecCCeEEEEecccCc-cCCCCCeEEecCCCCCceeEEEEEEEEeecCCCC
Q psy15217 243 EELEIIGIKDTVKTTCTGVEMF-RKLLDQGQAGDNIGLLLRGTKR-EDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGG 320 (396)
Q Consensus 243 ~~v~~~p~~~~~~~~v~si~~~-~~~~~~a~~G~~v~l~l~~~~~-~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~ 320 (396)
|++.++..+....+.-.++... ..+.+...+|| ||.-..+++. .+.+.||+++...+|.. . .
T Consensus 226 dki~~m~tg~~y~V~evGvftP~~~~~~~L~aGe-VG~~~a~iK~v~d~~VGDTiT~~~~p~~-e-------~------- 289 (603)
T COG0481 226 DKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAGE-VGYIIAGIKDVRDARVGDTITLASNPAT-E-------P------- 289 (603)
T ss_pred CEEEEEecCCEEEEEEEeeccCCccccccccCCc-eeEEEEeeeecccCcccceEeccCCCcc-c-------c-------
Confidence 9999997665555544555544 34677899998 7776666654 68999999996553311 0 0
Q ss_pred CCcccccCceeEEEEEeeEEEEE--EEccCCcccccCCCEEEEEEEecceeecccCCe
Q psy15217 321 RHTPFFSNYRPQFYFRTTDVTGS--IELPKNKEMVMPGDNVLITVRLINPIAMEEGLR 376 (396)
Q Consensus 321 ~~~~i~~g~~~~~~~~~~~~~~~--i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r 376 (396)
-+-.+--+|+++||-.-..+. -.+.+....|..||.+ .+++++.+.++-.|.|
T Consensus 290 --LpGfk~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDas-l~~E~EtS~ALGfGfR 344 (603)
T COG0481 290 --LPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDAS-LTYEPETSQALGFGFR 344 (603)
T ss_pred --CCCCCcCCceEEEeecccChhHHHHHHHHHHhcccccce-eeeccccchhccCcee
Confidence 111112257888885332211 1122334568889875 8888888888877754
No 37
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=8.4e-38 Score=314.24 Aligned_cols=268 Identities=26% Similarity=0.370 Sum_probs=218.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC-----CeeEEEEecCCh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-----ARHYAHVDCPGH 85 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG~ 85 (396)
...||+++||+|||||||+++|+.......... ...+.+|..+.|+++|+|++.....+.+. ...++|||||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~-~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~ 80 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE-MREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 80 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc-ccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc
Confidence 367999999999999999999997543222111 23457899999999999999876655442 367899999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
.+|...+..++..+|++++|+|++++...|+.+++..+...++| +|+++||+|+.+.. .+....++.+. +++.
T Consensus 81 ~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~--~~~~~~el~~~---lg~~- 153 (595)
T TIGR01393 81 VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSAD--PERVKKEIEEV---IGLD- 153 (595)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccC--HHHHHHHHHHH---hCCC-
Confidence 99999999999999999999999999999999999888888998 55578999997532 12222334333 3332
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEE
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEEL 245 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v 245 (396)
..+++++||++| .|+.+|++++.+.+|+|..+.++|+++.|.+++..++.|+++.|+|.+|+|++||+|
T Consensus 154 -~~~vi~vSAktG----------~GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v 222 (595)
T TIGR01393 154 -ASEAILASAKTG----------IGIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKI 222 (595)
T ss_pred -cceEEEeeccCC----------CCHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEE
Confidence 235899999998 589999999999999998888999999999999999999999999999999999999
Q ss_pred EEeecCCceeEEEEEEEecc---eeeCeeecCCeEEEEecccCc-cCCCCCeEEecCCC
Q psy15217 246 EIIGIKDTVKTTCTGVEMFR---KLLDQGQAGDNIGLLLRGTKR-EDVERGQVLAKPGS 300 (396)
Q Consensus 246 ~~~p~~~~~~~~v~si~~~~---~~~~~a~~G~~v~l~l~~~~~-~~i~~G~vl~~~~~ 300 (396)
.+.|.+ ...+|.+|..++ .++++|.||| |++.+++++. .+++.||+|++++.
T Consensus 223 ~~~~~~--~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdtl~~~~~ 278 (595)
T TIGR01393 223 RFMSTG--KEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDTITHVKN 278 (595)
T ss_pred EEecCC--CeeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCEEECCCC
Confidence 998754 456788887665 6889999999 7777777754 68999999997653
No 38
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=6.2e-38 Score=315.51 Aligned_cols=269 Identities=26% Similarity=0.369 Sum_probs=218.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee-----CCeeEEEEecCC
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-----KARHYAHVDCPG 84 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-----~~~~~~iiDtpG 84 (396)
+...||+++||+|||||||+++|+......... ....+.+|..+.|+++|+|+......+.+ ....++||||||
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~-~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSER-EMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCccc-ccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 456799999999999999999998754322211 11346799999999999999876665544 256789999999
Q ss_pred hhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 85 HADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 85 ~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
|.+|...+.+++..+|++++|+|+++|...|+.+++..+...++| +|+++||+|+.+.. .+.+..++.+. ++++
T Consensus 84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~~a~--~~~v~~ei~~~---lg~~ 157 (600)
T PRK05433 84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLPAAD--PERVKQEIEDV---IGID 157 (600)
T ss_pred cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCccc--HHHHHHHHHHH---hCCC
Confidence 999999999999999999999999999999999999998888999 55678999997542 12222334333 3342
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCE
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEE 244 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~ 244 (396)
..+++++||++| .|+.+|+++|.+.+|+|..+.++|+++.|.+++..++.|.++.|+|.+|+|++||+
T Consensus 158 --~~~vi~iSAktG----------~GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~ 225 (600)
T PRK05433 158 --ASDAVLVSAKTG----------IGIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDK 225 (600)
T ss_pred --cceEEEEecCCC----------CCHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCE
Confidence 235899999997 58999999999999999888899999999999999999999999999999999999
Q ss_pred EEEeecCCceeEEEEEEEec---ceeeCeeecCCeEEEEecccC-ccCCCCCeEEecCCC
Q psy15217 245 LEIIGIKDTVKTTCTGVEMF---RKLLDQGQAGDNIGLLLRGTK-REDVERGQVLAKPGS 300 (396)
Q Consensus 245 v~~~p~~~~~~~~v~si~~~---~~~~~~a~~G~~v~l~l~~~~-~~~i~~G~vl~~~~~ 300 (396)
|++.|.+ ...+|.+|... ..++++|.||| +++.+++++ ..+++.||+|++.+.
T Consensus 226 i~~~~~~--~~~~V~~i~~~~~~~~~v~~~~aGd-Ig~i~~~ik~~~~~~~Gdtl~~~~~ 282 (600)
T PRK05433 226 IKMMSTG--KEYEVDEVGVFTPKMVPVDELSAGE-VGYIIAGIKDVRDARVGDTITLAKN 282 (600)
T ss_pred EEEecCC--ceEEEEEeeccCCCceECcEEcCCC-EEEEecccccccccCCCCEEECCCC
Confidence 9998754 45678888764 47899999999 666666664 368999999987653
No 39
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1e-36 Score=266.03 Aligned_cols=193 Identities=80% Similarity=1.202 Sum_probs=170.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
++++|+++||+|||||||+++|++.....++.....++.+|..++|+++|+|++.....|+.+++.++|+|||||.+|..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 47899999999999999999999876544443333445799999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15217 91 NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 170 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~ 170 (396)
++..++..+|++++|||+.+|...|+++++.++...++|++|+++||||+.+.++.++.+.++++.+++.++++..++|+
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~i 160 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPI 160 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeE
Confidence 99999999999999999999999999999999999999988788999999865666777888899999999997778999
Q ss_pred EEecccccccCC--CCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 171 IKGSAKLALEGD--TGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 171 i~~Sa~~g~~~~--~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
+|+||++|.|.. .+||. ++..|+++|++..|+|
T Consensus 161 ipiSa~~g~n~~~~~~w~~--~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 161 VRGSALKALEGDDPNKWVK--KILELLDALDSYIPTP 195 (195)
T ss_pred EEeeCccccCCCCCCcchh--cHhHHHHHHHhCCCCC
Confidence 999999998764 58986 5789999999876554
No 40
>KOG0052|consensus
Probab=100.00 E-value=1.2e-35 Score=272.57 Aligned_cols=328 Identities=31% Similarity=0.459 Sum_probs=264.5
Q ss_pred cCCCCeeEEEEEeCCCCChHHHHHHHHh------------hhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC
Q psy15217 7 ERTKPHINVGTIGHVDHGKTTLTAAIAT------------VLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA 74 (396)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSTLi~~L~~------------~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 74 (396)
.+.+++++|+++||+++||||+.+...+ .....+++.+.+.|.+|.+..|+++|++++.....+++..
T Consensus 2 ~~~~~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k 81 (391)
T KOG0052|consen 2 GKEKIHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 81 (391)
T ss_pred CCcccccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeeccccee
Confidence 4567899999999999999998874221 1233456777777899999999999999999999999999
Q ss_pred eeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCC-------ChhHHHHHHHHHHcCCCeEEEEEeccCCCCH---H
Q psy15217 75 RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-------MPQTREHILLARQVGVPYIVVFLNKADMVDD---E 144 (396)
Q Consensus 75 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~-------~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~---~ 144 (396)
+.++++|.|||.+|.++|+.+.+++|.++++|.+..|. .+|++||+.++..+++.++|+.+||||...+ +
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s~ 161 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 161 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCccc
Confidence 99999999999999999999999999999999995543 3899999999999999999999999997653 2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeC
Q psy15217 145 ELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSIS 224 (396)
Q Consensus 145 ~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~ 224 (396)
.+++.+.++.+...+..++ +..+. .+++|.+.
T Consensus 162 ~r~~ei~k~~~~~~~~~g~--------------------------n~~~~----------------------~~~~~~~~ 193 (391)
T KOG0052|consen 162 ARYEEIKKEVSSYIKKIGY--------------------------NPAAV----------------------LQDVYKIG 193 (391)
T ss_pred cchhhhheeeeeeeecccc--------------------------CChhh----------------------hccceeec
Confidence 2222222111111111111 11111 34556666
Q ss_pred CCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCC--C
Q psy15217 225 GRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI--K 302 (396)
Q Consensus 225 ~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~--~ 302 (396)
+.| +..|.++.++.+...|.. .+..+++.+++++.-.++.+|++++++..++...++++|+++.+..+. .
T Consensus 194 g~~------~~t~iie~~~~v~~~~~~--~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~~p~~ 265 (391)
T KOG0052|consen 194 GIG------VETGISEPGMDVTFAPSG--VTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKNDPPV 265 (391)
T ss_pred cee------eeeeeccCccceeccccc--cccccccEEEEeccCccCCCcceeeeecccCccCcccccceecccccCCcc
Confidence 655 778889998888776643 377889999999888899999999999999999999999999988654 3
Q ss_pred ceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEE-------------ccCCcccccCCCEEEEEEEeccee
Q psy15217 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIE-------------LPKNKEMVMPGDNVLITVRLINPI 369 (396)
Q Consensus 303 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~-------------~~~~~~~l~~g~~~~v~~~~~~p~ 369 (396)
....|.|++++++|| ..|..||.|.+.|++.++.|++. +...+++++++|.+.+.+.|.+|+
T Consensus 266 ~~~g~t~qviilnhp-----gqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~kp~ 340 (391)
T KOG0052|consen 266 EAAGFTAQVIILNHP-----GQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGKPL 340 (391)
T ss_pred ccccceeeEEEecCc-----cccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCCcc
Confidence 357899999999998 47999999999999999999873 234578899999999999999999
Q ss_pred ecccC------CeEEEEeCCcEEEEEEEeeec
Q psy15217 370 AMEEG------LRFAIREGGRTVGAGVVVKII 395 (396)
Q Consensus 370 ~~~~~------~r~~lr~~~~t~~~G~i~~v~ 395 (396)
|++.. +||.+|+..+|+|+|.|..+.
T Consensus 341 ~ve~~~~~~~l~rfav~d~~~tvavgvikav~ 372 (391)
T KOG0052|consen 341 CVESFSDYVPLGRFAVRDMRQTVAVGVIKAVD 372 (391)
T ss_pred ccccccccccccchhhhhhhccccccceeeee
Confidence 99864 699999999999999998753
No 41
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=3.1e-33 Score=289.35 Aligned_cols=283 Identities=27% Similarity=0.371 Sum_probs=211.9
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee----CCeeEEEEecC
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET----KARHYAHVDCP 83 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~----~~~~~~iiDtp 83 (396)
+.....||+++||+|||||||+++|+..............+.+|..+.|++||+|++.+...+.+ .+..++|+|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 44567799999999999999999998654322211111235699999999999999987554433 46788999999
Q ss_pred ChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCC------HH---HHHHHHHHHH
Q psy15217 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD------DE---ELLELVEIEI 154 (396)
Q Consensus 84 G~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~------~~---~~~~~i~~~~ 154 (396)
||.+|...+..++..+|++++|||+.+|+..||+.++..+...++|. |+++||||+.. .+ +.+..+..++
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~-iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~ 174 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKP-VLFINKVDRLIKELKLTPQEMQQRLLKIIKDV 174 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCe-EEEEECchhhcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998899996 56789999863 11 2233333445
Q ss_pred HHHHhhcC---------CCCCCCeEEEecccccccCCC--------------------------CCCCCCcHHHHHHHhh
Q psy15217 155 RELLNKYE---------FPGNDIPIIKGSAKLALEGDT--------------------------GPLGEQSILSLSKALD 199 (396)
Q Consensus 155 ~~~l~~~~---------~~~~~~~~i~~Sa~~g~~~~~--------------------------~~~~~~~~~~Ll~~l~ 199 (396)
..++..+. +.+.+-.+++.|++.++.-.. .|+ +-+..|++++.
T Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~--Pv~~~Lld~I~ 252 (731)
T PRK07560 175 NKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKA--PLHEVVLDMVV 252 (731)
T ss_pred HHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhc--cchhHHHHHHH
Confidence 55554332 112233467788887643210 000 01226899999
Q ss_pred hhCCCCCC-------------------------CCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCce
Q psy15217 200 TYIPTPNR-------------------------AIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTV 254 (396)
Q Consensus 200 ~~l~~~~~-------------------------~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~ 254 (396)
.++|.|.. +.+.|+.+.|.+++..++.|.++++||.+|+|++||.|++.+.+ .
T Consensus 253 ~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~--~ 330 (731)
T PRK07560 253 KHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAK--K 330 (731)
T ss_pred HhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCC--C
Confidence 99998842 22468899999999999999999999999999999999987543 4
Q ss_pred eEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeEEecCC
Q psy15217 255 KTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (396)
Q Consensus 255 ~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (396)
+.+|..|... ..++++|.|||++++. |+ .++.+|++|+.+.
T Consensus 331 ~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~--gl--~~~~~GdtL~~~~ 375 (731)
T PRK07560 331 KNRVQQVGIYMGPEREEVEEIPAGNIAAVT--GL--KDARAGETVVSVE 375 (731)
T ss_pred ceEeheehhhhcCCCceeeeECCCCEEEEE--cc--cccccCCEEeCCC
Confidence 4667777654 4689999999999983 44 3577899998664
No 42
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=4.1e-32 Score=279.49 Aligned_cols=272 Identities=26% Similarity=0.326 Sum_probs=209.1
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhc--CCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKF--GGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~--~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~ 86 (396)
.....||+++||+|+|||||+++|+....... +......+.+|..+.|+++|+|++.....+++.++.++|+|||||.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 34578999999999999999999986443221 1111224679999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC---
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF--- 163 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~--- 163 (396)
+|..++.+++..+|++++|+|+.+|+..||++++..+...++|.+ +++||||+.+++ . .....++++.+.....
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~~~~-~-~~~~~~i~~~l~~~~~~~~ 163 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRTGAD-F-YRVVEQIKDRLGANPVPIQ 163 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCCCCC-H-HHHHHHHHHHhCCCeeeEE
Confidence 999999999999999999999999999999999999999999965 578999998642 1 1122233332221100
Q ss_pred --------------------------------------------------------------------------------
Q psy15217 164 -------------------------------------------------------------------------------- 163 (396)
Q Consensus 164 -------------------------------------------------------------------------------- 163 (396)
T Consensus 164 ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~ 243 (693)
T PRK00007 164 LPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKA 243 (693)
T ss_pred ecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHH
Confidence
Q ss_pred -------CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC--------------------CCCCceeEE
Q psy15217 164 -------PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR--------------------AIDGAFLLP 216 (396)
Q Consensus 164 -------~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~--------------------~~~~~~~~~ 216 (396)
....+|++..||.++ .|+..|++++.+++|.|.. +.+.|+.+.
T Consensus 244 ~l~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~ 313 (693)
T PRK00007 244 ALRKATIANEIVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSAL 313 (693)
T ss_pred HHHHHHhcCcEEEEEecccccC----------cCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEE
Confidence 001234444455443 4789999999999998742 125688899
Q ss_pred EEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCC
Q psy15217 217 VEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERG 292 (396)
Q Consensus 217 i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G 292 (396)
|.++...+..|.+..+||.||+|+.||.|+.. ....+.++..|... ..+++++.|||++++ .|++ +++.|
T Consensus 314 VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~--~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i--~gl~--~~~~G 387 (693)
T PRK00007 314 AFKIMTDPFVGKLTFFRVYSGVLESGSYVLNS--TKGKKERIGRILQMHANKREEIKEVRAGDIAAA--VGLK--DTTTG 387 (693)
T ss_pred EEEeeecCCCCcEEEEEEeeeEEcCCCEEEeC--CCCceeEeceeEEeccCCcccccccCCCcEEEE--eCCc--cCCcC
Confidence 99999888889999999999999999999753 22334566666554 468899999999998 4443 47899
Q ss_pred eEEecCC
Q psy15217 293 QVLAKPG 299 (396)
Q Consensus 293 ~vl~~~~ 299 (396)
++|++++
T Consensus 388 dtL~~~~ 394 (693)
T PRK00007 388 DTLCDEK 394 (693)
T ss_pred CEeeCCC
Confidence 9998654
No 43
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=3.5e-32 Score=272.17 Aligned_cols=245 Identities=28% Similarity=0.343 Sum_probs=192.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCe-eEEEEecCChhhhH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR-HYAHVDCPGHADYI 89 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~~~iiDtpG~~~~~ 89 (396)
...+|+++||+|||||||+++|.+.... ....+|+|.+.....+++.+. .++|||||||++|.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~----------------~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~ 149 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVA----------------QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT 149 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc----------------cccCCceeecceEEEEEECCCcEEEEEECCCCcchh
Confidence 4578999999999999999999753211 111347888877777776544 89999999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC----C
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP----G 165 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~----~ 165 (396)
..+.+++..+|+++||+|+++|..+||.+++..+...++| +|+++||+|+.+.+ .+.+...+. ..++. +
T Consensus 150 ~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~--~e~v~~~L~----~~g~~~~~~~ 222 (587)
T TIGR00487 150 SMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDKPEAN--PDRVKQELS----EYGLVPEDWG 222 (587)
T ss_pred hHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcccccCC--HHHHHHHHH----HhhhhHHhcC
Confidence 9999999999999999999999999999999999999999 66678999996531 111222222 22211 1
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh--CCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY--IPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGE 243 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~--l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~ 243 (396)
...+++++||++| .|+.+|++++... ++....+.+.|+++.|.+++..++.|++++|+|.+|+|++||
T Consensus 223 ~~~~~v~iSAktG----------eGI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd 292 (587)
T TIGR00487 223 GDTIFVPVSALTG----------DGIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGD 292 (587)
T ss_pred CCceEEEEECCCC----------CChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCC
Confidence 2468999999998 5899999988542 223334456899999999999999999999999999999999
Q ss_pred EEEEeecCCceeEEEEEEEe-cceeeCeeecCCeEEEEecccCccCC-CCCeEEe
Q psy15217 244 ELEIIGIKDTVKTTCTGVEM-FRKLLDQGQAGDNIGLLLRGTKREDV-ERGQVLA 296 (396)
Q Consensus 244 ~v~~~p~~~~~~~~v~si~~-~~~~~~~a~~G~~v~l~l~~~~~~~i-~~G~vl~ 296 (396)
.+.++|. ..+|++++. +...+++|.||+.|.+. |++ ++ ..|+.+.
T Consensus 293 ~iv~~~~----~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl~--~~p~aGd~~~ 339 (587)
T TIGR00487 293 IVVVGAA----YGRVRAMIDENGKSVKEAGPSKPVEIL--GLS--DVPAAGDEFI 339 (587)
T ss_pred EEEECCC----ccEEEEEECCCCCCCCEECCCCEEEEe--CCC--CCCCCCCEEE
Confidence 9998763 357999998 56789999999999874 443 33 5788876
No 44
>KOG0466|consensus
Probab=100.00 E-value=4.5e-34 Score=251.36 Aligned_cols=349 Identities=29% Similarity=0.423 Sum_probs=266.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEe------------------
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE------------------ 71 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~------------------ 71 (396)
+..+||+.+||+.|||||++.++.+.. .-+.+.|.+|.+|+...+.+..
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~-------------TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~ 102 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVH-------------TVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSF 102 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccce-------------EEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhcc
Confidence 457999999999999999999987542 2345667778888877654210
Q ss_pred -----------e--------CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCC-CCChhHHHHHHHHHHcCCCeE
Q psy15217 72 -----------T--------KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYI 131 (396)
Q Consensus 72 -----------~--------~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~-g~~~qt~e~l~~~~~~~ip~i 131 (396)
. --+++.|+|+|||+-.+.+|+.|+...|+++|++.+++ -+++||.|||.....+..+++
T Consensus 103 gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhi 182 (466)
T KOG0466|consen 103 GSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHI 182 (466)
T ss_pred CCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceE
Confidence 0 02568899999999999999999999999999999998 689999999999999999999
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCC
Q psy15217 132 VVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDG 211 (396)
Q Consensus 132 IvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~ 211 (396)
+++-||+|+...++..+.-+ ++..|++.... +..|++|+||... .+++.+.+++...+|.|.|+...
T Consensus 183 iilQNKiDli~e~~A~eq~e-~I~kFi~~t~a--e~aPiiPisAQlk----------yNId~v~eyivkkIPvPvRdf~s 249 (466)
T KOG0466|consen 183 IILQNKIDLIKESQALEQHE-QIQKFIQGTVA--EGAPIIPISAQLK----------YNIDVVCEYIVKKIPVPVRDFTS 249 (466)
T ss_pred EEEechhhhhhHHHHHHHHH-HHHHHHhcccc--CCCceeeehhhhc----------cChHHHHHHHHhcCCCCccccCC
Confidence 99999999998755544443 57777764433 6789999999886 48999999999999999999999
Q ss_pred ceeEEEEEEEeeCC--------CceEEEEEEEeeEEecCCEEEEeec----CCceeEEEEEE-------EecceeeCeee
Q psy15217 212 AFLLPVEDVFSISG--------RGTVVTGRVERGIVRVGEELEIIGI----KDTVKTTCTGV-------EMFRKLLDQGQ 272 (396)
Q Consensus 212 ~~~~~i~~~~~~~~--------~G~v~~g~v~~G~l~~g~~v~~~p~----~~~~~~~v~si-------~~~~~~~~~a~ 272 (396)
|+++.|.++|.+.. .|-|..|.+..|.|++||++.+.|. +..-..+++-| .-.+..++.|.
T Consensus 250 ~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~Av 329 (466)
T KOG0466|consen 250 PPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAV 329 (466)
T ss_pred CCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhccceeec
Confidence 99999999998753 4568999999999999999999873 11123344433 33356788999
Q ss_pred cCCeEEEEec---ccCccCCCCCeEEecCCCCCc-eeEEEEEEEEeecCC---------CCCCcccccCceeEEEEEeeE
Q psy15217 273 AGDNIGLLLR---GTKREDVERGQVLAKPGSIKP-HKHFTGEIYALSKDE---------GGRHTPFFSNYRPQFYFRTTD 339 (396)
Q Consensus 273 ~G~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~-~~~f~a~v~~l~~~~---------~~~~~~i~~g~~~~~~~~~~~ 339 (396)
||..+++-.+ .+.+.|--.|+||...+.++. ..+++...++|-.-- ..+...+.+|...++.+|+..
T Consensus 330 PGGLIGVGT~~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrllgvrt~~~~k~~kv~kL~k~E~lmvNIGS~s 409 (466)
T KOG0466|consen 330 PGGLIGVGTKMDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLLGVRTKGDKKQAKVSKLVKNEILMVNIGSTS 409 (466)
T ss_pred CCceeeeccccCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHHhccccccccccchhhhcccCcEEEEEecccc
Confidence 9999998543 122345557888887776544 567777766654321 112345677777788888766
Q ss_pred EEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEE-E---eCCcEEEEEEEee
Q psy15217 340 VTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAI-R---EGGRTVGAGVVVK 393 (396)
Q Consensus 340 ~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~l-r---~~~~t~~~G~i~~ 393 (396)
.-+++...+ +| .+++.|..|+|-+.|.++.+ | ..+|.+|+|.|.+
T Consensus 410 TG~~v~~vk-------~d--~~k~~Lt~P~CteigEkiAlSRrvekhWRLIGwg~I~~ 458 (466)
T KOG0466|consen 410 TGGRVSAVK-------AD--MAKIQLTSPVCTEIGEKIALSRRVEKHWRLIGWGQIKA 458 (466)
T ss_pred cCceEEEEe-------cc--eeeeEecCchhcccchhhhhhhhhhhheEEecceeEeC
Confidence 666664222 33 46899999999999998887 2 2479999999863
No 45
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=2.8e-32 Score=278.74 Aligned_cols=248 Identities=29% Similarity=0.324 Sum_probs=196.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
....+|+++||+|||||||+++|...... ....+|+|.....+.++++++.++|||||||++|.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~----------------~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~ 351 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVA----------------AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT 351 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc----------------ccccCceeeeccEEEEEECCEEEEEEECCCCccch
Confidence 35678999999999999999999753211 11135888888878888888999999999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHH---HHhhcCCCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRE---LLNKYEFPGN 166 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~---~l~~~~~~~~ 166 (396)
.++.+++..+|++|||+|+++|..+||.+++..+...++| +||++||||+.+++ .+.+..++.. +...++ .
T Consensus 352 ~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~--~e~V~~eL~~~~~~~e~~g---~ 425 (787)
T PRK05306 352 AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKPGAN--PDRVKQELSEYGLVPEEWG---G 425 (787)
T ss_pred hHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECccccccC--HHHHHHHHHHhcccHHHhC---C
Confidence 9999999999999999999999999999999999999999 66688999997542 1222222222 111221 3
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC--CCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCE
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI--PTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEE 244 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l--~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~ 244 (396)
.+|++++||++| .|+.+|+++|.... .....+.+.+++..|.+++..++.|++++++|.+|+|++||.
T Consensus 426 ~vp~vpvSAktG----------~GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~ 495 (787)
T PRK05306 426 DTIFVPVSAKTG----------EGIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDI 495 (787)
T ss_pred CceEEEEeCCCC----------CCchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCE
Confidence 579999999998 58889998876421 123344568899999999999999999999999999999999
Q ss_pred EEEeecCCceeEEEEEEEec-ceeeCeeecCCeEEEEecccCccCC-CCCeEEec
Q psy15217 245 LEIIGIKDTVKTTCTGVEMF-RKLLDQGQAGDNIGLLLRGTKREDV-ERGQVLAK 297 (396)
Q Consensus 245 v~~~p~~~~~~~~v~si~~~-~~~~~~a~~G~~v~l~l~~~~~~~i-~~G~vl~~ 297 (396)
|++++ ...+|++++.. +.++++|.||+.|.+. |++ ++ ..||.|+.
T Consensus 496 vv~g~----~~gkVr~m~~~~~~~v~~A~pGd~V~I~--gl~--~~p~~Gd~l~~ 542 (787)
T PRK05306 496 VVAGT----TYGRVRAMVDDNGKRVKEAGPSTPVEIL--GLS--GVPQAGDEFVV 542 (787)
T ss_pred EEECC----cEEEEEEEECCCCCCCCEEcCCCeEEEe--CCC--CCCCCCCEEEE
Confidence 99864 35789999874 6789999999999984 433 34 68999983
No 46
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=5.3e-32 Score=278.88 Aligned_cols=271 Identities=27% Similarity=0.340 Sum_probs=209.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhc--CCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKF--GGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~--~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
...+||+++||+|+|||||+++|+....... +......+.+|..+.|++||+|++.....++++++.++|+|||||.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 4578999999999999999999986533211 11112246799999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC----
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF---- 163 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~---- 163 (396)
|..++..++..+|++++|+|+.+|...|+++++..+...++|.+ +++||||+.+++ ++.+..++++.+.....
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~~~~--~~~~~~~i~~~l~~~~~~~~i 162 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRIGAD--FFRSVEQIKDRLGANAVPIQL 162 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC--HHHHHHHHHHHhCCCceeEEe
Confidence 99999999999999999999999999999999999999999965 578999998642 11222233333321000
Q ss_pred --------------------------------------------------------------------------------
Q psy15217 164 -------------------------------------------------------------------------------- 163 (396)
Q Consensus 164 -------------------------------------------------------------------------------- 163 (396)
T Consensus 163 Pis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~ 242 (691)
T PRK12739 163 PIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAA 242 (691)
T ss_pred cccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHH
Confidence
Q ss_pred ------CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC-------------------CCCCceeEEEE
Q psy15217 164 ------PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR-------------------AIDGAFLLPVE 218 (396)
Q Consensus 164 ------~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~-------------------~~~~~~~~~i~ 218 (396)
...-+|++..||.++ .|+..|+++|..++|.|.. +.+.|+.+.|.
T Consensus 243 l~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~Vf 312 (691)
T PRK12739 243 IRKATINMEFFPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAF 312 (691)
T ss_pred HHHHHHcCCEEEEEeccccCC----------ccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEE
Confidence 001235555566554 4789999999999998742 23568999999
Q ss_pred EEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeE
Q psy15217 219 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQV 294 (396)
Q Consensus 219 ~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~v 294 (396)
+++..+..|.+..+||.||+|+.||.|+... ...+.++..|... ..+++++.|||++++. |++ +++.|++
T Consensus 313 K~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~--~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl~--~~~~gdt 386 (691)
T PRK12739 313 KIMTDPFVGRLTFFRVYSGVLESGSYVLNTT--KGKKERIGRLLQMHANKREEIKEVYAGDIAAAV--GLK--DTTTGDT 386 (691)
T ss_pred EeeeCCCCCeEEEEEEeeeEEcCCCEEEeCC--CCceEEecceEEEecCCcccccccCCCCEEEEe--CCC--cccCCCE
Confidence 9998888999999999999999999997542 2334566666543 4688999999999984 444 4789999
Q ss_pred EecCC
Q psy15217 295 LAKPG 299 (396)
Q Consensus 295 l~~~~ 299 (396)
|++..
T Consensus 387 l~~~~ 391 (691)
T PRK12739 387 LCDEK 391 (691)
T ss_pred EeCCC
Confidence 98654
No 47
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=100.00 E-value=7e-33 Score=242.05 Aligned_cols=182 Identities=41% Similarity=0.603 Sum_probs=152.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCcc--ccccccCCChhHhhcCceEEeeeeEEe--eCCeeEEEEecCCh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEA--KSYDQIDAAPEEKARGITINTAHIEYE--TKARHYAHVDCPGH 85 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~~~iiDtpG~ 85 (396)
|+.++|+++||+|||||||+++|+........... .....+|..++|+++|+|++.....++ ...+.++|+|||||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 56899999999999999999999976543222111 112347899999999999999999998 89999999999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHH-HHHhhcCCC
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIR-ELLNKYEFP 164 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~-~~l~~~~~~ 164 (396)
.+|.+++..++..+|++++|||+.+|...|+.+|+..+..+++| +||++||||+.. ..++...+++. .+++..++.
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~~--~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLIE--KELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSSH--HHHHHHHHHHHHHHHHHTTST
T ss_pred cceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccchh--hhHHHHHHHHHHHhccccccC
Confidence 99999999999999999999999999999999999999999999 666889999993 33344444555 677888776
Q ss_pred C-CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 165 G-NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 165 ~-~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
+ ..+|++++||++| .|+.+|++++.+++|.
T Consensus 158 ~~~~~~vi~~Sa~~g----------~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 158 GEEIVPVIPISALTG----------DGIDELLEALVELLPS 188 (188)
T ss_dssp TTSTEEEEEEBTTTT----------BTHHHHHHHHHHHS--
T ss_pred ccccceEEEEecCCC----------CCHHHHHHHHHHhCcC
Confidence 5 4789999999998 5899999999998873
No 48
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=5e-31 Score=261.37 Aligned_cols=273 Identities=24% Similarity=0.318 Sum_probs=207.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhc---CC---ccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecC
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKF---GG---EAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCP 83 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~---~~---~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtp 83 (396)
....||+++||+|||||||+++|+....... .- .......+|..+.|++||+|+..+...+++.+..+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4578999999999999999999985432211 10 01112347889999999999999999999999999999999
Q ss_pred ChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH--HHHHHHHHHHHHH-----
Q psy15217 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEIRE----- 156 (396)
Q Consensus 84 G~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~--~~~~~~i~~~~~~----- 156 (396)
||.+|...+..++..+|++|+|+|+.+|...|++..+..+...++| +++++||+|+... .+..+.++..+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRDGREPLELLDEIEEVLGIACAPI 166 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCcccccCHHHHHHHHHHHhCCCCeeE
Confidence 9999999999999999999999999999999999999999999999 4557899998753 2222222211100
Q ss_pred --------------------------------------------HHhh-------------c--------------CCCC
Q psy15217 157 --------------------------------------------LLNK-------------Y--------------EFPG 165 (396)
Q Consensus 157 --------------------------------------------~l~~-------------~--------------~~~~ 165 (396)
++.+ + -..+
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~ 246 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAG 246 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcC
Confidence 0000 0 0011
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCC---------CCCceeEEEEEEE---eeCCCceEEEEE
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRA---------IDGAFLLPVEDVF---SISGRGTVVTGR 233 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~---------~~~~~~~~i~~~~---~~~~~G~v~~g~ 233 (396)
..+|++..||.++ -|+..||+++..++|.|... .+.+|...|+++. ..+.+|.+...|
T Consensus 247 ~~~PV~~GSA~~n----------~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvR 316 (526)
T PRK00741 247 ELTPVFFGSALNN----------FGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVR 316 (526)
T ss_pred CeEEEEEeecccC----------cCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEE
Confidence 2378999999887 48999999999999988531 2456777777776 345789999999
Q ss_pred EEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeEEecCC
Q psy15217 234 VERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (396)
Q Consensus 234 v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (396)
|.||+++.|+.|+... .+.+.++..+... +.++++|.|||++++. +..+++.||+|++.+
T Consensus 317 V~sG~l~~g~~v~~~~--~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~----~l~~~~~GDTL~~~~ 380 (526)
T PRK00741 317 VCSGKFEKGMKVRHVR--TGKDVRISNALTFMAQDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE 380 (526)
T ss_pred EeccEECCCCEEEecc--CCceEEecceEEEecCCceECceeCCCCEEEEE----CCCCCccCCCccCCC
Confidence 9999999999998653 3345566555433 4789999999999883 345789999998665
No 49
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=7.7e-31 Score=270.45 Aligned_cols=271 Identities=27% Similarity=0.338 Sum_probs=207.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhc--CCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKF--GGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~--~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
....||+++||+|+|||||+++|+....... +......+.+|..+.|+++|+|++.....+++.+..++|||||||.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 4567999999999999999999986543221 11112236789999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC----
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF---- 163 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~---- 163 (396)
|...+..++..+|++++|+|+.+|...|+.+++..+...++|.++ ++||+|+..++ ++...+++.+.+....+
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iv-viNK~D~~~~~--~~~~~~~i~~~l~~~~~~~~i 164 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIA-FVNKMDKTGAN--FLRVVNQIKQRLGANAVPIQL 164 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEE-EEECCCCCCCC--HHHHHHHHHHHhCCCceeEEe
Confidence 999999999999999999999999999999999999999999665 68999998642 11222233332221100
Q ss_pred --------------------------------------------------------------------------------
Q psy15217 164 -------------------------------------------------------------------------------- 163 (396)
Q Consensus 164 -------------------------------------------------------------------------------- 163 (396)
T Consensus 165 pis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l 244 (689)
T TIGR00484 165 PIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAI 244 (689)
T ss_pred ccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHH
Confidence
Q ss_pred -----CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC-------------------CCCCceeEEEEE
Q psy15217 164 -----PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR-------------------AIDGAFLLPVED 219 (396)
Q Consensus 164 -----~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~-------------------~~~~~~~~~i~~ 219 (396)
....+|++..||.++ .|+..|++++..++|.|.. +.+.|+.+.|.+
T Consensus 245 ~~~~~~~~~~PV~~gSa~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK 314 (689)
T TIGR00484 245 RKGVLNCEFFPVLCGSAFKN----------KGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFK 314 (689)
T ss_pred HHHHhcCCEEEEEeccccCC----------ccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEE
Confidence 011234444555443 4789999999999998742 125688999999
Q ss_pred EEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeEE
Q psy15217 220 VFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVL 295 (396)
Q Consensus 220 ~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl 295 (396)
+...+..|.+..+||.||+|+.||.|+... ...+.++..+... ..+++++.|||++++ .|++ +++.|++|
T Consensus 315 ~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~--~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i--~gl~--~~~~gdtl 388 (689)
T TIGR00484 315 VATDPFVGQLTFVRVYSGVLKSGSYVKNSR--KNKKERVGRLVKMHANNREEIKEVRAGDICAA--IGLK--DTTTGDTL 388 (689)
T ss_pred eeecCCCCeEEEEEEEEeEEcCCCEEEeCC--CCceEEecceEEeecCCcccccccCCCCEEEE--cCCC--CCCCCCEE
Confidence 998899999999999999999999998542 2233455555443 468899999999998 4443 56899999
Q ss_pred ecCC
Q psy15217 296 AKPG 299 (396)
Q Consensus 296 ~~~~ 299 (396)
++++
T Consensus 389 ~~~~ 392 (689)
T TIGR00484 389 CDPK 392 (689)
T ss_pred eCCC
Confidence 8654
No 50
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=1.1e-30 Score=258.99 Aligned_cols=270 Identities=24% Similarity=0.297 Sum_probs=206.5
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhh---cC---CccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEec
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKK---FG---GEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDC 82 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~---~~---~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDt 82 (396)
.....||+++||+|||||||+++|+...... +. ........+|..+.|++||+|+..+...+++.+..++||||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 3457899999999999999999997533221 11 11112345899999999999999999999999999999999
Q ss_pred CChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCC--HHHHHHHHHHHHHHHHhh
Q psy15217 83 PGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD--DEELLELVEIEIRELLNK 160 (396)
Q Consensus 83 pG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~--~~~~~~~i~~~~~~~l~~ 160 (396)
|||.+|...+..++..+|++|+|+|+..+...++..++..+...++| +++++||+|+.. .++..+.+ +..+..
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~~~~ll~~i----~~~l~~ 162 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRDPLELLDEV----ENELKI 162 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECccccCCCHHHHHHHH----HHHhCC
Confidence 99999999999999999999999999999999999999999888999 555689999864 22322222 222211
Q ss_pred cC------------------------------------------------------------------------------
Q psy15217 161 YE------------------------------------------------------------------------------ 162 (396)
Q Consensus 161 ~~------------------------------------------------------------------------------ 162 (396)
..
T Consensus 163 ~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~ 242 (527)
T TIGR00503 163 NCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLA 242 (527)
T ss_pred CCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHH
Confidence 00
Q ss_pred --CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCC---------CCCceeEEEEEEEe--e-CCCce
Q psy15217 163 --FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRA---------IDGAFLLPVEDVFS--I-SGRGT 228 (396)
Q Consensus 163 --~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~---------~~~~~~~~i~~~~~--~-~~~G~ 228 (396)
..+.-+|++..||.++ -|+..||+.+..++|.|... .+.+|...|+++.. . +.+|.
T Consensus 243 ~~~~~~~~PV~~GSA~~n----------~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~gr 312 (527)
T TIGR00503 243 AFHGGEMTPVFFGTALGN----------FGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDR 312 (527)
T ss_pred HHhcCCeeEEEEeecccC----------ccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCce
Confidence 0112356677777775 48999999999999988532 24677777887765 4 47899
Q ss_pred EEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeEEecCC
Q psy15217 229 VVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (396)
Q Consensus 229 v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (396)
+...||.||+|+.|++|+... .+.+.++..+... +.++++|.|||++++. +..+++.||+||+.+
T Consensus 313 iaf~RV~sG~l~~g~~v~~~~--~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~----~~~~~~~GDtl~~~~ 381 (527)
T TIGR00503 313 VAFMRVVSGKYEKGMKLKHVR--TGKDVVISDALTFMAGDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE 381 (527)
T ss_pred EEEEEEeeeEEcCCCEEEecC--CCCcEEecchhhhhcCCceEcceeCCCCEEEEE----CCCCcccCCEecCCC
Confidence 999999999999999998653 3345566665443 5789999999999883 345789999998754
No 51
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=2.5e-30 Score=260.47 Aligned_cols=272 Identities=29% Similarity=0.402 Sum_probs=210.7
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcC--CccccccccCCChhHhhcCceEEeeeeEEeeCC-eeEEEEecCCh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFG--GEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGH 85 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpG~ 85 (396)
.....||+++||+|||||||..+|+.......+ ........+|..+.|++||+|+..+...+.+.+ +.++|||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 456789999999999999999999865433222 112223479999999999999999999998885 99999999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh----c
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK----Y 161 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~----~ 161 (396)
-+|.....++++.+|+|++|+||.+|+++||...++.+...++|+++ ++||||....+ .+ ....++...+.. .
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~-fiNKmDR~~a~-~~-~~~~~l~~~l~~~~~~v 163 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRIL-FVNKMDRLGAD-FY-LVVEQLKERLGANPVPV 163 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEE-EEECccccccC-hh-hhHHHHHHHhCCCceee
Confidence 99999999999999999999999999999999999999999999776 57999987541 11 111122222211 0
Q ss_pred CCC-----------------------------------------------------------------------------
Q psy15217 162 EFP----------------------------------------------------------------------------- 164 (396)
Q Consensus 162 ~~~----------------------------------------------------------------------------- 164 (396)
+.+
T Consensus 164 ~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 164 QLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred eccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHH
Confidence 000
Q ss_pred ------CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC--------------------CCCCceeEEEE
Q psy15217 165 ------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR--------------------AIDGAFLLPVE 218 (396)
Q Consensus 165 ------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~--------------------~~~~~~~~~i~ 218 (396)
....|+++.||..+ .++..||+++..++|.|.. +.++|+.+.+.
T Consensus 244 ~~~~~~~~~~pvl~gsa~kn----------~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vf 313 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVF 313 (697)
T ss_pred HHhhhccceeeEEeeecccC----------CcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEE
Confidence 01234444444332 5789999999999998722 23689999999
Q ss_pred EEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeE
Q psy15217 219 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQV 294 (396)
Q Consensus 219 ~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~v 294 (396)
++...+..|.+..+||.||+|+.||.++... +..+.+|..|... +.+++++.||+++++ .|++ +...|++
T Consensus 314 Ki~~d~~~g~l~~~RvysGtl~~G~~v~n~~--~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~--~Gl~--~~~tGdT 387 (697)
T COG0480 314 KIMTDPFVGKLTFVRVYSGTLKSGSEVLNST--KGKKERVGRLLLMHGNEREEVDEVPAGDIVAL--VGLK--DATTGDT 387 (697)
T ss_pred EeEecCCCCeEEEEEEeccEEcCCCEEEeCC--CCccEEEEEEEEccCCceeecccccCccEEEE--Eccc--ccccCCe
Confidence 9999888999888999999999999887653 3456677777654 468999999999998 4443 4589999
Q ss_pred EecCC
Q psy15217 295 LAKPG 299 (396)
Q Consensus 295 l~~~~ 299 (396)
+|+.+
T Consensus 388 l~~~~ 392 (697)
T COG0480 388 LCDEN 392 (697)
T ss_pred eecCC
Confidence 99766
No 52
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.98 E-value=4.2e-30 Score=257.93 Aligned_cols=256 Identities=28% Similarity=0.308 Sum_probs=182.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEE------------------ee
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY------------------ET 72 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~------------------~~ 72 (396)
.+..|+++||+|||||||+++|.+....... ..++|.......+ ..
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~----------------~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~ 68 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE----------------AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKL 68 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCC----------------CCceEEeeceeeccccccccccceecccccccc
Confidence 3457999999999999999999754211110 1122222111111 01
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCC-HH-------
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD-DE------- 144 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~-~~------- 144 (396)
.-..++|||||||++|...+.+++..+|++++|+|+++|..+|+.+++..+...++| +++++||+|+.+ |.
T Consensus 69 ~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~~~~~~~~ 147 (586)
T PRK04004 69 KIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTP-FVVAANKIDRIPGWKSTEDAPF 147 (586)
T ss_pred ccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhhhhcCchH
Confidence 111378999999999999999999999999999999999999999999999999999 666789999852 21
Q ss_pred ------------HHHHHHHHHHHHHHhhcCCCC----------CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh--
Q psy15217 145 ------------ELLELVEIEIRELLNKYEFPG----------NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT-- 200 (396)
Q Consensus 145 ------------~~~~~i~~~~~~~l~~~~~~~----------~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~-- 200 (396)
+.++....++...|...++.. ..++++|+||++| .|+.+|++.+..
T Consensus 148 ~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tG----------eGi~dLl~~i~~~~ 217 (586)
T PRK04004 148 LESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTG----------EGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCC----------CChHHHHHHHHHHH
Confidence 122222233445556556532 3689999999998 588888887653
Q ss_pred --hCCC-CCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecc------------
Q psy15217 201 --YIPT-PNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR------------ 265 (396)
Q Consensus 201 --~l~~-~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~------------ 265 (396)
.++. -..+.+.|++++|.+++..+|.|++++|+|.+|+|++||.|.++|......++|+++..++
T Consensus 218 ~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~ 297 (586)
T PRK04004 218 QRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKF 297 (586)
T ss_pred HHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhcccccccc
Confidence 2322 2344678999999999999999999999999999999999999886544567999998762
Q ss_pred eeeCeeecCCeEEEEecccCccCCCCCeEE
Q psy15217 266 KLLDQGQAGDNIGLLLRGTKREDVERGQVL 295 (396)
Q Consensus 266 ~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl 295 (396)
..+++|.|..-|-+...|++ ++..|+-+
T Consensus 298 ~~~~~~~~~~~v~i~~~gl~--~~~~g~~~ 325 (586)
T PRK04004 298 KPVDEVVAAAGVKISAPDLE--DALAGSPL 325 (586)
T ss_pred ccccccCCCCceEEEeCCcc--ccCCCCeE
Confidence 45566666665655434443 23455544
No 53
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.98 E-value=2.1e-30 Score=262.59 Aligned_cols=247 Identities=25% Similarity=0.299 Sum_probs=188.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee----CCeeEEEEecCChh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET----KARHYAHVDCPGHA 86 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~----~~~~~~iiDtpG~~ 86 (396)
...+|+++||+|||||||+++|+..... ....+|+|.+...+.+.. .+..++|||||||+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~----------------~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe 306 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIA----------------QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE 306 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCc----------------cccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence 5579999999999999999999753211 112357776655444333 35789999999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHH---HhhcCC
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIREL---LNKYEF 163 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~---l~~~~~ 163 (396)
.|..++.+++..+|++|||||+.+|..+||.+++..+...++| +||++||+|+.+.. .+.+..++..+ ...++
T Consensus 307 ~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKiDl~~~~--~e~v~~eL~~~~ll~e~~g- 382 (742)
T CHL00189 307 AFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKIDKANAN--TERIKQQLAKYNLIPEKWG- 382 (742)
T ss_pred HHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECCCccccC--HHHHHHHHHHhccchHhhC-
Confidence 9999999999999999999999999999999999999999999 56678999997642 12222233221 11122
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC--CCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEec
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP--TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~--~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~ 241 (396)
..+|++++||++| .|+.+|++++..+.+ ......+.|+...|.++...++.|++++++|.+|+|++
T Consensus 383 --~~vpvv~VSAktG----------~GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~ 450 (742)
T CHL00189 383 --GDTPMIPISASQG----------TNIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHI 450 (742)
T ss_pred --CCceEEEEECCCC----------CCHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEec
Confidence 2479999999998 589999999876432 22233456788888888888999999999999999999
Q ss_pred CCEEEEeecCCceeEEEEEEEe-cceeeCeeecCCeEEEEecccCccCCCCCeEEe
Q psy15217 242 GEELEIIGIKDTVKTTCTGVEM-FRKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296 (396)
Q Consensus 242 g~~v~~~p~~~~~~~~v~si~~-~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 296 (396)
||.|+++| ...+|+++.. ...++.+|.||+.|.+ .|++ .....|+.+.
T Consensus 451 GD~vv~g~----~~gkVr~m~~~~~~~v~~a~pgdiV~I--~gl~-~~~~~Gd~l~ 499 (742)
T CHL00189 451 GDIIVIGT----SYAKIRGMINSLGNKINLATPSSVVEI--WGLS-SVPATGEHFQ 499 (742)
T ss_pred CCEEEECC----cceEEEEEEcCCCcCccEEcCCCceEe--cCcc-cCCCCCCEEE
Confidence 99999875 2367899874 4678999999999987 4442 2455688775
No 54
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=2.2e-31 Score=245.32 Aligned_cols=273 Identities=24% Similarity=0.315 Sum_probs=206.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhh---c---CCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecC
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKK---F---GGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCP 83 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~---~---~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtp 83 (396)
.....++|+-|+|||||||...|+-.-... | .........-|..+.|++||+++.++...|++.++.++++|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 456789999999999999999987432211 1 1112223346888999999999999999999999999999999
Q ss_pred ChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH--HHHHHHHHHHHHHHHhhc
Q psy15217 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEIRELLNKY 161 (396)
Q Consensus 84 G~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~--~~~~~~i~~~~~~~l~~~ 161 (396)
||++|...+.+-++.+|.|+.||||..|+.+||+..+..|+..++| |+-++||+|.... -+...++++++.--...+
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pi 168 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPLELLDEIEEELGIQCAPI 168 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCc-eEEEeeccccccCChHHHHHHHHHHhCcceecc
Confidence 9999999999999999999999999999999999999999999999 5567899998643 233333333221110001
Q ss_pred CC----------------------------------------------------------------------------CC
Q psy15217 162 EF----------------------------------------------------------------------------PG 165 (396)
Q Consensus 162 ~~----------------------------------------------------------------------------~~ 165 (396)
.+ .+
T Consensus 169 tWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G 248 (528)
T COG4108 169 TWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAG 248 (528)
T ss_pred cccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcC
Confidence 01 12
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC---------C---CCCceeEEEEEEEeeCCCceEEEEE
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR---------A---IDGAFLLPVEDVFSISGRGTVVTGR 233 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~---------~---~~~~~~~~i~~~~~~~~~G~v~~g~ 233 (396)
+..|++..||+.+ -|+..+|+.+..+.|+|.. + .-..|.|.|+-....+.+-++..-|
T Consensus 249 ~~TPVFFGSAl~N----------FGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmR 318 (528)
T COG4108 249 ELTPVFFGSALGN----------FGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMR 318 (528)
T ss_pred CccceEehhhhhc----------cCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEE
Confidence 3467888888776 3899999999999887743 1 1245566666666677788999999
Q ss_pred EEeeEEecCCEEEEeecCCceeEEEEEEEe----cceeeCeeecCCeEEEEecccCccCCCCCeEEecCC
Q psy15217 234 VERGIVRVGEELEIIGIKDTVKTTCTGVEM----FRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (396)
Q Consensus 234 v~~G~l~~g~~v~~~p~~~~~~~~v~si~~----~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (396)
|.||.+..|+++..... +..+++..-+. .++.+++|.|||.+|+.-. -.++.||+++..+
T Consensus 319 v~SGkferGMkv~h~rt--GK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nh----G~~~IGDT~t~Ge 382 (528)
T COG4108 319 VCSGKFERGMKVTHVRT--GKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNH----GTIQIGDTFTEGE 382 (528)
T ss_pred eccccccCCceeeeeec--CCceEecchHhhhhhhhhhhhhccCCCeEeccCC----CceeecceeecCc
Confidence 99999999999987643 34444444332 3678999999999999544 3588999998765
No 55
>PRK13351 elongation factor G; Reviewed
Probab=99.98 E-value=5.3e-30 Score=264.90 Aligned_cols=271 Identities=30% Similarity=0.393 Sum_probs=210.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcC--CccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFG--GEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
....||+++||+|+|||||+++|+........ ......+.+|..+.|+++|+|+......+++.+..++|||||||.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 45789999999999999999999865432111 1111234689999999999999998888999999999999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh-------
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK------- 160 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~------- 160 (396)
|...+..++..+|++++|+|+.++...++.+++..+...++|.++ ++||+|+...+ . ....+++++.+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ii-viNK~D~~~~~-~-~~~~~~i~~~l~~~~~~~~~ 162 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLI-FINKMDRVGAD-L-FKVLEDIEERFGKRPLPLQL 162 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEE-EEECCCCCCCC-H-HHHHHHHHHHHCCCeEEEEe
Confidence 999999999999999999999999999999999999999999655 68999987641 1 1111122222111
Q ss_pred ---------------------------------------------------------------------cCC--------
Q psy15217 161 ---------------------------------------------------------------------YEF-------- 163 (396)
Q Consensus 161 ---------------------------------------------------------------------~~~-------- 163 (396)
..+
T Consensus 163 P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~ 242 (687)
T PRK13351 163 PIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAP 242 (687)
T ss_pred ccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHH
Confidence 000
Q ss_pred ------CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC------------------CCCCceeEEEEE
Q psy15217 164 ------PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR------------------AIDGAFLLPVED 219 (396)
Q Consensus 164 ------~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~------------------~~~~~~~~~i~~ 219 (396)
...-+|++..||+++ .|+..|++++..++|.|.. +.+.|+.+.|.+
T Consensus 243 ~~~~~~~~~~~PV~~gSA~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK 312 (687)
T PRK13351 243 LREGTRSGHLVPVLFGSALKN----------IGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFK 312 (687)
T ss_pred HHHHHHhCCEEEEEecccCcC----------ccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEE
Confidence 012367888899887 5899999999999998852 235789999999
Q ss_pred EEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeEE
Q psy15217 220 VFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVL 295 (396)
Q Consensus 220 ~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl 295 (396)
++..++.|.+..+||.+|+|+.||+|++.+.+ ...++..|... ..++++|.|||++++ .|++ ++..|++|
T Consensus 313 ~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i--~gl~--~~~~gdtl 386 (687)
T PRK13351 313 VQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGG--KREKVGRLFRLQGNKREEVDRAKAGDIVAV--AGLK--ELETGDTL 386 (687)
T ss_pred eeecCCCceEEEEEEeEEEEcCCCEEEeCCCC--CceEeeeEEEEccCCeeECCccCCCCEEEE--ECcc--cCccCCEE
Confidence 99989999999999999999999999987533 33455555443 478999999999877 5543 46789999
Q ss_pred ecCC
Q psy15217 296 AKPG 299 (396)
Q Consensus 296 ~~~~ 299 (396)
++.+
T Consensus 387 ~~~~ 390 (687)
T PRK13351 387 HDSA 390 (687)
T ss_pred eCCC
Confidence 8654
No 56
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.98 E-value=4.6e-31 Score=235.84 Aligned_cols=186 Identities=37% Similarity=0.470 Sum_probs=154.3
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhh---------------hcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEE
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSK---------------KFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYA 78 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~---------------~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ 78 (396)
||+++||+|||||||+++|+..... .+.....+.+.+|..+.|+++|+|++.....+++.++.+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 6899999999999999999854321 1122223335799999999999999999999999999999
Q ss_pred EEecCChhhhHHHHHhhhhcCCEEEEEEecCC-------CCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH---HHHHH
Q psy15217 79 HVDCPGHADYIKNMITGAAQMDGAILVCSAAD-------GPMPQTREHILLARQVGVPYIVVFLNKADMVDD---EELLE 148 (396)
Q Consensus 79 iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~-------g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~---~~~~~ 148 (396)
|||||||.+|...+..++..+|++++|||+.+ +...|+.+++..+..++++++|+++||||+..+ +..++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998 466799999999988888778888999999832 34566
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEecccccccC-----CCCCCCCCcHHHHHHHhhhhC
Q psy15217 149 LVEIEIRELLNKYEFPGNDIPIIKGSAKLALEG-----DTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 149 ~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~-----~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+.+++..+++.+++....+|++++||++|.+. .++||.+ .+|+++|....
T Consensus 161 ~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~~~~w~~g---~~l~~~l~~~~ 216 (219)
T cd01883 161 EIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSENMPWYKG---PTLLEALDSLE 216 (219)
T ss_pred HHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCCCCCCccC---CcHHHHHhCCC
Confidence 777788888888887666789999999999763 3579987 47788877643
No 57
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.97 E-value=1.6e-30 Score=268.44 Aligned_cols=283 Identities=27% Similarity=0.369 Sum_probs=204.5
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeE----EeeCCeeEEEEecC
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE----YETKARHYAHVDCP 83 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~----~~~~~~~~~iiDtp 83 (396)
..+...||+++||+|+|||||+++|+................+|..++|+++|+|++..... ++..+..++|||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 34557899999999999999999998653322111111234589999999999999876443 56677889999999
Q ss_pred ChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH------H---HHHHHHHHHH
Q psy15217 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD------E---ELLELVEIEI 154 (396)
Q Consensus 84 G~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~------~---~~~~~i~~~~ 154 (396)
||.+|...+..++..+|++++|+|+.+|+..++.+++..+...++|.+ +++||+|+... + +.+..+...+
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~~~~~~~~~~~~~~~~~~~v 173 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDRLINELKLTPQELQERFIKIITEV 173 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhcccchhcCCHHHHHHHHhhhhHHH
Confidence 999999999999999999999999999999999999999888999965 57899998642 1 1222222233
Q ss_pred HHHHhhcC---------CCCCCCeEEEecccccccCC---------C-----------------CCCCCCcHHHHHHHhh
Q psy15217 155 RELLNKYE---------FPGNDIPIIKGSAKLALEGD---------T-----------------GPLGEQSILSLSKALD 199 (396)
Q Consensus 155 ~~~l~~~~---------~~~~~~~~i~~Sa~~g~~~~---------~-----------------~~~~~~~~~~Ll~~l~ 199 (396)
...++... +.....+....|++.++.-. . .|+ +-+..|++++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--Pv~~~Lld~i~ 251 (720)
T TIGR00490 174 NKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKS--PLHQVVLDMVI 251 (720)
T ss_pred HhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhh--hHHHHHHHHHH
Confidence 33432210 00001112233443331100 0 111 11467899999
Q ss_pred hhCCCCCC-------------------------CCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCce
Q psy15217 200 TYIPTPNR-------------------------AIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTV 254 (396)
Q Consensus 200 ~~l~~~~~-------------------------~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~ 254 (396)
.++|.|.. +.+.|+.+.|.++...++.|+++++||.+|+|++||.|++.+.+ .
T Consensus 252 ~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~--~ 329 (720)
T TIGR00490 252 RHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRK--A 329 (720)
T ss_pred HhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCC--C
Confidence 99998842 12467889999998888999999999999999999999987643 4
Q ss_pred eEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeEEecCC
Q psy15217 255 KTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (396)
Q Consensus 255 ~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (396)
..+|..|... ..++++|.|||++++. +++ ++.+||+|++++
T Consensus 330 ~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~--gl~--~~~~GdtL~~~~ 374 (720)
T TIGR00490 330 KARIQQVGVYMGPERVEVDEIPAGNIVAVI--GLK--DAVAGETICTTV 374 (720)
T ss_pred eeEeeEEEEeccCCccCccEECCCCEEEEE--Ccc--ccccCceeecCC
Confidence 5678887665 4689999999999883 443 577999998654
No 58
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.97 E-value=9.4e-30 Score=254.23 Aligned_cols=254 Identities=27% Similarity=0.334 Sum_probs=179.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee------------------CC
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET------------------KA 74 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~------------------~~ 74 (396)
..|+++||+|||||||+++|++...... ...|+|.......+.. ..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~----------------e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~ 68 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKR----------------EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKI 68 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccc----------------cCCceecccCeeEeeecccccccccccccccccccc
Confidence 4699999999999999999986422110 0123333222111111 11
Q ss_pred eeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCC-HH-----HHHH
Q psy15217 75 RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD-DE-----ELLE 148 (396)
Q Consensus 75 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~-~~-----~~~~ 148 (396)
..+.|||||||+.|...+..++..+|++++|+|+++|..+|+.+++..+...++| +++++||+|+.+ +. ..++
T Consensus 69 ~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~~~~~~~~~~f~e 147 (590)
T TIGR00491 69 PGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTP-FVVAANKIDRIPGWRSHEGRPFME 147 (590)
T ss_pred CcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCC-EEEEEECCCccchhhhccCchHHH
Confidence 2488999999999999999999999999999999999999999999999999999 556789999974 21 0011
Q ss_pred -------HHHH-------HHHHHHhhcCCCC----------CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh---
Q psy15217 149 -------LVEI-------EIRELLNKYEFPG----------NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY--- 201 (396)
Q Consensus 149 -------~i~~-------~~~~~l~~~~~~~----------~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~--- 201 (396)
.+.. .+...+.+.++.. ..+|++|+||++| +|+++|++++...
T Consensus 148 ~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG----------eGideLl~~l~~l~~~ 217 (590)
T TIGR00491 148 SFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG----------EGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC----------CChhHHHHHHHHHHHH
Confidence 0111 1112234444422 3589999999998 6889998887542
Q ss_pred -CC-CCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecc------------ee
Q psy15217 202 -IP-TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR------------KL 267 (396)
Q Consensus 202 -l~-~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~------------~~ 267 (396)
++ .-..+.+.|++++|.+++..+|.|++++|.|.+|+|++||.|.++|......++|+++...+ ..
T Consensus 218 ~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~ 297 (590)
T TIGR00491 218 YLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQK 297 (590)
T ss_pred HhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCC
Confidence 22 12234578999999999999999999999999999999999999986544678899987653 24
Q ss_pred eCeeecCCeEEEEecccCccCCCCCeEE
Q psy15217 268 LDQGQAGDNIGLLLRGTKREDVERGQVL 295 (396)
Q Consensus 268 ~~~a~~G~~v~l~l~~~~~~~i~~G~vl 295 (396)
+.++.|..-+-+...+++. ...|+.+
T Consensus 298 ~~~~~~~~~~~v~~~~l~~--~~aG~~~ 323 (590)
T TIGR00491 298 VDEVVAAAGVKIAAPGLDD--VMAGSPI 323 (590)
T ss_pred cceecCCCceeEEecCCCC--CCCCCEE
Confidence 4555555545554454432 3455554
No 59
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.97 E-value=1.6e-30 Score=230.57 Aligned_cols=182 Identities=32% Similarity=0.392 Sum_probs=150.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhh---------------cCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEE
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKK---------------FGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYA 78 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~---------------~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ 78 (396)
||+++||+|||||||+++|+...... +++.....+.+|..+.|+++|+|++.....++..+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999998653221 112223446799999999999999999999999999999
Q ss_pred EEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH-HHHHHHHHHHHHHH
Q psy15217 79 HVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIREL 157 (396)
Q Consensus 79 iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~~~~~~i~~~~~~~ 157 (396)
|||||||++|...+..++..+|++++|+|+.++...++.+++.++...+.|.+|+++||+|+.++ .+.++.+..+++.+
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888878878999999864 34455566678888
Q ss_pred HhhcCCCCCCCeEEEeccccccc-----CCCCCCCCCcHHHHHHHhhh
Q psy15217 158 LNKYEFPGNDIPIIKGSAKLALE-----GDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 158 l~~~~~~~~~~~~i~~Sa~~g~~-----~~~~~~~~~~~~~Ll~~l~~ 200 (396)
++.++++ ..+++++||+++.+ ...+||.++ .|+++|+.
T Consensus 161 ~~~~~~~--~~~ii~iSA~~g~ni~~~~~~~~w~~g~---~~~~~~~~ 203 (208)
T cd04166 161 AAKLGIE--DITFIPISALDGDNVVSRSENMPWYSGP---TLLEHLET 203 (208)
T ss_pred HHHcCCC--CceEEEEeCCCCCCCccCCCCCCCCCCC---cHHHHHhc
Confidence 8888763 46799999999876 335899876 56666665
No 60
>PRK12740 elongation factor G; Reviewed
Probab=99.97 E-value=1.6e-29 Score=260.93 Aligned_cols=263 Identities=30% Similarity=0.411 Sum_probs=205.1
Q ss_pred EeCCCCChHHHHHHHHhhhhhhcCC--ccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHHhh
Q psy15217 18 IGHVDHGKTTLTAAIATVLSKKFGG--EAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITG 95 (396)
Q Consensus 18 ~G~~~~GKSTLi~~L~~~~~~~~~~--~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~ 95 (396)
+||+|||||||+++|+......... .....+.+|..+.|+++|+|+......+.+.+..++|||||||.+|...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 5999999999999998764432111 11123578999999999999999999999999999999999999999999999
Q ss_pred hhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh---------------
Q psy15217 96 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK--------------- 160 (396)
Q Consensus 96 ~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~--------------- 160 (396)
+..+|++++|+|+..+...++..++..+...++|.++ ++||+|+.... .....+++++.+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~ii-v~NK~D~~~~~--~~~~~~~l~~~l~~~~~~~~~p~~~~~~~ 157 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRII-FVNKMDRAGAD--FFRVLAQLQEKLGAPVVPLQLPIGEGDDF 157 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEE-EEECCCCCCCC--HHHHHHHHHHHHCCCceeEEecccCCCCc
Confidence 9999999999999999999999999999999999665 67999987531 11111122221110
Q ss_pred ----------------------------------------------------------cC--------------CCCCCC
Q psy15217 161 ----------------------------------------------------------YE--------------FPGNDI 168 (396)
Q Consensus 161 ----------------------------------------------------------~~--------------~~~~~~ 168 (396)
.. ....-+
T Consensus 158 ~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~ 237 (668)
T PRK12740 158 TGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIV 237 (668)
T ss_pred eEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 00 001246
Q ss_pred eEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC-----------------CCCCceeEEEEEEEeeCCCceEEE
Q psy15217 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR-----------------AIDGAFLLPVEDVFSISGRGTVVT 231 (396)
Q Consensus 169 ~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~-----------------~~~~~~~~~i~~~~~~~~~G~v~~ 231 (396)
|++..||.+| .|+..|++++..++|.|.. +.+.|+.+.|.+++..++.|.++.
T Consensus 238 Pv~~gSA~~~----------~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~ 307 (668)
T PRK12740 238 PVFCGSALKN----------KGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSL 307 (668)
T ss_pred EEEeccccCC----------ccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEE
Confidence 7888999987 5899999999999998842 335789999999999999999999
Q ss_pred EEEEeeEEecCCEEEEeecCCceeEEEEEEEe----cceeeCeeecCCeEEEEecccCccCCCCCeEEecCC
Q psy15217 232 GRVERGIVRVGEELEIIGIKDTVKTTCTGVEM----FRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (396)
Q Consensus 232 g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~----~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (396)
+||.+|+|++||+|++.+.+ .+.++..|.. ...++++|.|||++++. |++ .++.|++|++..
T Consensus 308 ~RV~sG~L~~g~~v~~~~~~--~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~--gl~--~~~~Gdtl~~~~ 373 (668)
T PRK12740 308 VRVYSGTLKKGDTLYNSGTG--KKERVGRLYRMHGKQREEVDEAVAGDIVAVA--KLK--DAATGDTLCDKG 373 (668)
T ss_pred EEEeeeEEcCCCEEEeCCCC--CcEEecceeeecCCCccccCccCCCCEEEEe--ccC--ccCCCCEEeCCC
Confidence 99999999999999987643 2334444433 35789999999999985 543 589999998654
No 61
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3e-29 Score=239.13 Aligned_cols=232 Identities=29% Similarity=0.336 Sum_probs=177.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC---CeeEEEEecCChhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK---ARHYAHVDCPGHAD 87 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~~~iiDtpG~~~ 87 (396)
.+.-|.++||+|||||||+..+-+.....+. ..|+|.....+.++.+ ...++|+|||||+-
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~E----------------aGGITQhIGA~~v~~~~~~~~~itFiDTPGHeA 67 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGE----------------AGGITQHIGAYQVPLDVIKIPGITFIDTPGHEA 67 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcccccc----------------CCceeeEeeeEEEEeccCCCceEEEEcCCcHHH
Confidence 3456899999999999999999754322211 2389998888888874 46899999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC---
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP--- 164 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~--- 164 (396)
|..+..+|+..+|.++||||+++|.++||.|-+..+++.++| +||++||+|+.+.+- ..+..++. +.++.
T Consensus 68 Ft~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~np--~~v~~el~----~~gl~~E~ 140 (509)
T COG0532 68 FTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVP-IVVAINKIDKPEANP--DKVKQELQ----EYGLVPEE 140 (509)
T ss_pred HHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCC-EEEEEecccCCCCCH--HHHHHHHH----HcCCCHhh
Confidence 999999999999999999999999999999999999999999 677899999986521 12222232 23443
Q ss_pred -CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC--CCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEec
Q psy15217 165 -GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP--TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241 (396)
Q Consensus 165 -~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~--~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~ 241 (396)
+..+.++|+||++| .|+++|++.+..... .-....+.+.+..|.++...+|.|.+++-.|.+|+|++
T Consensus 141 ~gg~v~~VpvSA~tg----------~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~ 210 (509)
T COG0532 141 WGGDVIFVPVSAKTG----------EGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKK 210 (509)
T ss_pred cCCceEEEEeeccCC----------CCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEec
Confidence 23589999999998 689999988754221 22334567788889999999999999999999999999
Q ss_pred CCEEEEeecCCceeEEEEEEE-ecceeeCeeecCCeEEE
Q psy15217 242 GEELEIIGIKDTVKTTCTGVE-MFRKLLDQGQAGDNIGL 279 (396)
Q Consensus 242 g~~v~~~p~~~~~~~~v~si~-~~~~~~~~a~~G~~v~l 279 (396)
||.+.+++... +|+... ....++..+.++..+.+
T Consensus 211 GD~iv~g~~~g----~I~t~v~~~~~~i~~a~ps~~v~i 245 (509)
T COG0532 211 GDIIVAGGEYG----RVRTMVDDLGKPIKEAGPSKPVEI 245 (509)
T ss_pred CCEEEEccCCC----ceEEeehhcCCCccccCCCCCeEE
Confidence 99999875432 233332 23455666666644443
No 62
>KOG1145|consensus
Probab=99.97 E-value=5.9e-29 Score=234.73 Aligned_cols=233 Identities=29% Similarity=0.298 Sum_probs=182.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee-CCeeEEEEecCChhhhH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KARHYAHVDCPGHADYI 89 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~ 89 (396)
.+.-|-++||+|||||||+..|.+.....+. -.|+|..+..+.... +++.++|+|||||.-|.
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E----------------~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~ 215 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGE----------------AGGITQHIGAFTVTLPSGKSITFLDTPGHAAFS 215 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhh----------------cCCccceeceEEEecCCCCEEEEecCCcHHHHH
Confidence 3457889999999999999999754322111 127887766544332 67899999999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHH---HhhcCCCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIREL---LNKYEFPGN 166 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~---l~~~~~~~~ 166 (396)
.+..+|+..+|.++|||.|.+|+++||.|.+..++..++| +||++||+|.+..+ .+.+++++... ++.+| .
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~G---G 289 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVP-IVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLG---G 289 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCC-EEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcC---C
Confidence 9999999999999999999999999999999999999999 77799999987642 12222222221 23333 4
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC--CCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCE
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP--TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEE 244 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~--~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~ 244 (396)
+++++|+||++| .|++.|.+++..+.. .-..+...|+...|-++.-.+++|.+.+..|..|+|++|+.
T Consensus 290 dVQvipiSAl~g----------~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~v 359 (683)
T KOG1145|consen 290 DVQVIPISALTG----------ENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSV 359 (683)
T ss_pred ceeEEEeecccC----------CChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccE
Confidence 789999999998 688888888654321 12234567888999999999999999999999999999999
Q ss_pred EEEeecCCceeEEEEEEEec-ceeeCeeecCCeEEE
Q psy15217 245 LEIIGIKDTVKTTCTGVEMF-RKLLDQGQAGDNIGL 279 (396)
Q Consensus 245 v~~~p~~~~~~~~v~si~~~-~~~~~~a~~G~~v~l 279 (396)
+..+. .+ ++|+++..+ .+++++|.|++.|.+
T Consensus 360 lV~G~--~w--~KVr~l~D~nGk~i~~A~Ps~pv~V 391 (683)
T KOG1145|consen 360 LVAGK--SW--CKVRALFDHNGKPIDEATPSQPVEV 391 (683)
T ss_pred EEEec--hh--hhhhhhhhcCCCCccccCCCCceEe
Confidence 98752 33 568887655 578999999999887
No 63
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.97 E-value=3.8e-28 Score=254.34 Aligned_cols=286 Identities=22% Similarity=0.303 Sum_probs=196.4
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee---------------
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET--------------- 72 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~--------------- 72 (396)
......||+++||+|||||||+++|+..............+.+|..++|++||+|++.+...+.+
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 45567899999999999999999999765432222222334689999999999999976555544
Q ss_pred -CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCC------HHH
Q psy15217 73 -KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD------DEE 145 (396)
Q Consensus 73 -~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~------~~~ 145 (396)
.++.++|+|||||.+|..++.++++.+|++|+||||.+|+..||+.++..+...++|.++ ++||||+.. .++
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~-~iNK~D~~~~~~~~~~~~ 173 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVL-TVNKMDRCFLELQVDGEE 173 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEE-EEECCcccchhhcCCHHH
Confidence 256789999999999999999999999999999999999999999999999999999655 689999982 211
Q ss_pred ---HHHHHHHHHHHHHhhcC--------CCCCCCeEEEeccccccc----------------------------------
Q psy15217 146 ---LLELVEIEIRELLNKYE--------FPGNDIPIIKGSAKLALE---------------------------------- 180 (396)
Q Consensus 146 ---~~~~i~~~~~~~l~~~~--------~~~~~~~~i~~Sa~~g~~---------------------------------- 180 (396)
.++.+.++++..+..++ +.+..-.+++.|+..++.
T Consensus 174 ~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~ 253 (843)
T PLN00116 174 AYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (843)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCC
Confidence 23334444542222221 101111122223321100
Q ss_pred ----------------------------------------------C---C------------------CCCCCCCcHHH
Q psy15217 181 ----------------------------------------------G---D------------------TGPLGEQSILS 193 (396)
Q Consensus 181 ----------------------------------------------~---~------------------~~~~~~~~~~~ 193 (396)
. . .+|+. +...
T Consensus 254 ~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~--~s~~ 331 (843)
T PLN00116 254 TKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLP--ASDA 331 (843)
T ss_pred CceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcC--ChHH
Confidence 0 0 12332 2366
Q ss_pred HHHHhhhhCCCCCC-------------------------CCCCceeEEEEEEEeeCCCce-EEEEEEEeeEEecCCEEEE
Q psy15217 194 LSKALDTYIPTPNR-------------------------AIDGAFLLPVEDVFSISGRGT-VVTGRVERGIVRVGEELEI 247 (396)
Q Consensus 194 Ll~~l~~~l~~~~~-------------------------~~~~~~~~~i~~~~~~~~~G~-v~~g~v~~G~l~~g~~v~~ 247 (396)
|++.+..++|.|.. +.+.|+.+.|.+++..+..|. +..+||.||+|+.||.|++
T Consensus 332 Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v 411 (843)
T PLN00116 332 LLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRI 411 (843)
T ss_pred HHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEE
Confidence 78888888888731 113578888888877677776 8999999999999999987
Q ss_pred eecCC--cee-----EEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeEEecCC
Q psy15217 248 IGIKD--TVK-----TTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (396)
Q Consensus 248 ~p~~~--~~~-----~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (396)
.+.+. ..+ .++..|... ..+++++.||+++++. |++ .-+..|++|++..
T Consensus 412 ~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~--gl~-~~~~~gdTL~~~~ 471 (843)
T PLN00116 412 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMV--GLD-QFITKNATLTNEK 471 (843)
T ss_pred eCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEE--eec-ccccCCceecCCc
Confidence 53221 111 244344332 3688999999999884 332 1234588887554
No 64
>PTZ00416 elongation factor 2; Provisional
Probab=99.96 E-value=1.9e-27 Score=248.61 Aligned_cols=288 Identities=22% Similarity=0.321 Sum_probs=195.9
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC----------CeeE
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK----------ARHY 77 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~----------~~~~ 77 (396)
+.....||+++||+|||||||+++|+..............+.+|..++|++||+|++.+...+.+. ++.+
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i 94 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLI 94 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEE
Confidence 345677999999999999999999997543222212222345899999999999999775555443 5678
Q ss_pred EEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC----C--HHH---HHH
Q psy15217 78 AHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV----D--DEE---LLE 148 (396)
Q Consensus 78 ~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~----~--~~~---~~~ 148 (396)
+|+|||||.+|..++..++..+|++|+|+|+.+|+..||+.++..+...++|.+ +++||||+. . +++ .++
T Consensus 95 ~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~i-v~iNK~D~~~~~~~~~~~~~~~~~~ 173 (836)
T PTZ00416 95 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPV-LFINKVDRAILELQLDPEEIYQNFV 173 (836)
T ss_pred EEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEE-EEEEChhhhhhhcCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999955 468999987 2 222 233
Q ss_pred HHHHHHHHHHhhc--------CCCCCCCeEEEeccccccc---------------CC------CCC---C-C--------
Q psy15217 149 LVEIEIRELLNKY--------EFPGNDIPIIKGSAKLALE---------------GD------TGP---L-G-------- 187 (396)
Q Consensus 149 ~i~~~~~~~l~~~--------~~~~~~~~~i~~Sa~~g~~---------------~~------~~~---~-~-------- 187 (396)
.+.++++..+..+ .+.+....+...|+..||. .. ..| | .
T Consensus 174 ~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~~ 253 (836)
T PTZ00416 174 KTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIK 253 (836)
T ss_pred HHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEEe
Confidence 4444555554421 1111111122223321100 00 000 0 0
Q ss_pred ------------------------------------------------------C--------------CcHHHHHHHhh
Q psy15217 188 ------------------------------------------------------E--------------QSILSLSKALD 199 (396)
Q Consensus 188 ------------------------------------------------------~--------------~~~~~Ll~~l~ 199 (396)
. +-+..|++++.
T Consensus 254 ~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Lld~i~ 333 (836)
T PTZ00416 254 DETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTLLEMIV 333 (836)
T ss_pred ccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHHHHHHH
Confidence 0 00155778888
Q ss_pred hhCCCCCC-------------------------CCCCceeEEEEEEEeeCCCce-EEEEEEEeeEEecCCEEEEeecCCc
Q psy15217 200 TYIPTPNR-------------------------AIDGAFLLPVEDVFSISGRGT-VVTGRVERGIVRVGEELEIIGIKDT 253 (396)
Q Consensus 200 ~~l~~~~~-------------------------~~~~~~~~~i~~~~~~~~~G~-v~~g~v~~G~l~~g~~v~~~p~~~~ 253 (396)
.++|.|.. +.+.|+.+.|.++...+..|. +..+||.||+|+.||.|++.+.+..
T Consensus 334 ~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~ 413 (836)
T PTZ00416 334 DHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYV 413 (836)
T ss_pred HhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCC
Confidence 88888731 113477788888877787888 7999999999999999987532211
Q ss_pred ---ee----EEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeEEecCC
Q psy15217 254 ---VK----TTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (396)
Q Consensus 254 ---~~----~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (396)
.+ .++..+... ..++++|.||+++++. |++..-.+.| +|+++.
T Consensus 414 ~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~--gl~~~~~~tg-TL~~~~ 467 (836)
T PTZ00416 414 PGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLV--GVDQYLVKSG-TITTSE 467 (836)
T ss_pred CCCcccchheecceeEEecCCCceECcEECCCCEEEEE--ecccceecce-eecCCC
Confidence 11 124444432 4689999999999983 4443336788 887554
No 65
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.96 E-value=9.9e-28 Score=212.88 Aligned_cols=190 Identities=25% Similarity=0.316 Sum_probs=143.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC----------CeeEEEEec
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK----------ARHYAHVDC 82 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~----------~~~~~iiDt 82 (396)
.||+++||+|||||||+++|+..............+++|..+.|++||+|++.+...+.+. +..++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 4899999999999999999987543221111112346899999999999998875444333 677899999
Q ss_pred CChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC------CHH---HHHHHHHHH
Q psy15217 83 PGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV------DDE---ELLELVEIE 153 (396)
Q Consensus 83 pG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~------~~~---~~~~~i~~~ 153 (396)
|||.+|..++..++..+|++++|+|+.+|...|+++++..+...++| +|+++||+|+. +++ ..+..+.++
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~ 159 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRLILELKLSPEEAYQRLARIIEQ 159 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCcchhhhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999989998 55678999985 333 234455556
Q ss_pred HHHHHhhcCCC--------CCCC-e----EEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 154 IRELLNKYEFP--------GNDI-P----IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 154 ~~~~l~~~~~~--------~~~~-~----~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
+..+++.+.-. ...+ | ++..|++.||.-... ....+-.+++.+.+++|+|
T Consensus 160 ~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~--~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 160 VNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTII--KFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred HhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccc--cccchHHHHHHHHhhCCCC
Confidence 77776665211 0012 4 888999998753221 1245678999999998876
No 66
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.95 E-value=2.2e-27 Score=211.62 Aligned_cols=176 Identities=24% Similarity=0.339 Sum_probs=139.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeee------------------------E
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHI------------------------E 69 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~------------------------~ 69 (396)
+|+++||.++|||||+++|+....+.+.+..+ ..++++++|.++|+|++.+.. .
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~--~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 78 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKAR--LNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEI 78 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEE--eehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCcccccccee
Confidence 58999999999999999999765555444333 358999999999999864431 2
Q ss_pred EeeCCeeEEEEecCChhhhHHHHHhhhh--cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHH
Q psy15217 70 YETKARHYAHVDCPGHADYIKNMITGAA--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELL 147 (396)
Q Consensus 70 ~~~~~~~~~iiDtpG~~~~~~~~~~~~~--~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~ 147 (396)
++..++.++|+|||||++|.+++..++. .+|++++|+|+.+|..+++++|+..+..+++| +++++||+|+.+.++ +
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~~~~~-~ 156 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDLAPANI-L 156 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECccccCHHH-H
Confidence 2345678999999999999999999986 79999999999999999999999999999999 455789999987543 4
Q ss_pred HHHHHHHHHHHhhcCCC---------------------CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 148 ELVEIEIRELLNKYEFP---------------------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 148 ~~i~~~~~~~l~~~~~~---------------------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
+....++.++++..+.. ...+|++++||.+| .|+++|++.|.. +|+
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg----------~Gi~~L~~~L~~-lp~ 223 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTG----------EGLDLLHAFLNL-LPL 223 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCc----------cCHHHHHHHHHh-cCC
Confidence 44555677777643321 23569999999998 689888888766 664
No 67
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.95 E-value=5.2e-27 Score=207.23 Aligned_cols=169 Identities=39% Similarity=0.552 Sum_probs=136.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC-------------------
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK------------------- 73 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~------------------- 73 (396)
++|+++||+|||||||+.+|++. ..|..+.|.++|.|++.++..+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~-------------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV-------------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-------------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 58999999999999999999642 2577888899999988775554432
Q ss_pred --------C------eeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCC-CCChhHHHHHHHHHHcCCCeEEEEEecc
Q psy15217 74 --------A------RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKA 138 (396)
Q Consensus 74 --------~------~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~-g~~~qt~e~l~~~~~~~ip~iIvviNK~ 138 (396)
+ +.+.|||||||++|..++..++..+|++++|+|+.+ +...++.+++..+...+++++++++||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 2 678999999999999999999999999999999998 4678899999988888887777789999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC
Q psy15217 139 DMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR 207 (396)
Q Consensus 139 D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~ 207 (396)
|+.+..+. +...++++++++.... ...+++++||++| .++++|++++.+.+|.|.+
T Consensus 148 Dl~~~~~~-~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g----------~gi~~L~~~l~~~l~~~~~ 203 (203)
T cd01888 148 DLVKEEQA-LENYEQIKKFVKGTIA--ENAPIIPISAQLK----------YNIDVLLEYIVKKIPTPPR 203 (203)
T ss_pred hccCHHHH-HHHHHHHHHHHhcccc--CCCcEEEEeCCCC----------CCHHHHHHHHHHhCCCCCC
Confidence 99875332 2233456666654322 3468999999997 6899999999998887753
No 68
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.94 E-value=8.6e-26 Score=198.01 Aligned_cols=172 Identities=35% Similarity=0.562 Sum_probs=136.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--------------CeeEE
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--------------ARHYA 78 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--------------~~~~~ 78 (396)
+||+++||+|+|||||+++|+... ..+.+|...+|+++|+|++.....+... +..++
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~---------~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIA---------STAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQIT 71 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhcc---------chhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEE
Confidence 589999999999999999998641 1124788889999999999876655544 67899
Q ss_pred EEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHH---HHHHHHHHH
Q psy15217 79 HVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEEL---LELVEIEIR 155 (396)
Q Consensus 79 iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~---~~~i~~~~~ 155 (396)
+||||||.+|.+.+..++..+|++++|+|+.++...++.+++..+...+.| +++++||+|+....+. .+.+.+.+.
T Consensus 72 i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~~~~~~~l~ 150 (192)
T cd01889 72 LVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKK-LIVVLNKIDLIPEEERERKIEKMKKKLQ 150 (192)
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999888899999999999999988998888877778887 5556899999865332 233333333
Q ss_pred HHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCC
Q psy15217 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN 206 (396)
Q Consensus 156 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~ 206 (396)
..+...++ ...+++++||+++ .|+.+|++++..++++|.
T Consensus 151 ~~~~~~~~--~~~~vi~iSa~~g----------~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 151 KTLEKTRF--KNSPIIPVSAKPG----------GGEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHHhcCc--CCCCEEEEeccCC----------CCHHHHHHHHHhcccccc
Confidence 33433333 3578999999997 699999999999988774
No 69
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.94 E-value=3.8e-25 Score=230.86 Aligned_cols=254 Identities=24% Similarity=0.281 Sum_probs=184.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC------------------
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA------------------ 74 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~------------------ 74 (396)
.|+...|-..| ||||+..|.+.... +....|+|+......++.+.
T Consensus 463 ~~~~~~~~~~~-KTtLLD~iR~t~v~----------------~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~ 525 (1049)
T PRK14845 463 HNFIANGILVH-NTTLLDKIRKTRVA----------------KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKI 525 (1049)
T ss_pred Ccceeeeeecc-cccHHHHHhCCCcc----------------cccCCCceeccceEEEEecccccccccccccccccCCc
Confidence 34433343333 99999999864321 12235888887766655431
Q ss_pred eeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCC-HH---------
Q psy15217 75 RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD-DE--------- 144 (396)
Q Consensus 75 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~-~~--------- 144 (396)
..+.|||||||+.|...+..++..+|++++|+|+++|..+|+.+++..+...++| +++++||+|+.+ |.
T Consensus 526 p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~~~~~~~~ 604 (1049)
T PRK14845 526 PGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNISEDEPFLL 604 (1049)
T ss_pred CcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccccchhhhh
Confidence 1389999999999999888889999999999999999999999999999999999 556789999963 21
Q ss_pred -------HHHHHHHHH---HHHHHhhcCCC----------CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC-
Q psy15217 145 -------ELLELVEIE---IRELLNKYEFP----------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP- 203 (396)
Q Consensus 145 -------~~~~~i~~~---~~~~l~~~~~~----------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~- 203 (396)
+..+.+... +...|...|+. ...+|++|+||++| +|+++|+++|....+
T Consensus 605 ~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tG----------eGId~Ll~~l~~l~~~ 674 (1049)
T PRK14845 605 NFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTG----------EGIPELLMMVAGLAQK 674 (1049)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCC----------CCHHHHHHHHHHhhHH
Confidence 111122111 11223444443 24689999999998 689999988764322
Q ss_pred ----CCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec------------cee
Q psy15217 204 ----TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF------------RKL 267 (396)
Q Consensus 204 ----~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~------------~~~ 267 (396)
......+.|+++.|.+++.++|.|+|++|.|.+|+|++||.|.++|.....-++|+++... ..+
T Consensus 675 ~l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~ 754 (1049)
T PRK14845 675 YLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDP 754 (1049)
T ss_pred hhhhhhccCCCCceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccc
Confidence 1233456899999999999999999999999999999999999998655557889998642 235
Q ss_pred eCeeecCCeEEEEecccCccCCCCCeEEe
Q psy15217 268 LDQGQAGDNIGLLLRGTKREDVERGQVLA 296 (396)
Q Consensus 268 ~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 296 (396)
++++.|..-|.+...|++ .+..|+-+.
T Consensus 755 ~~~~~~a~~vki~a~gl~--~~~aG~~~~ 781 (1049)
T PRK14845 755 VDEVTAAAGVKIAAPGLE--EVLAGSPIR 781 (1049)
T ss_pred cccccCCCceEEecCCcc--ccCCCCeEE
Confidence 677777777766545544 335666554
No 70
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.94 E-value=4.2e-25 Score=193.97 Aligned_cols=191 Identities=31% Similarity=0.370 Sum_probs=145.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 91 (396)
..+|+++|++++|||||+++|+..............+.+|..+.|..+|+|.......++.....+.+||||||++|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 46899999999999999999986422111111011244777888999999998888888888899999999999999999
Q ss_pred HHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC--CCCe
Q psy15217 92 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG--NDIP 169 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~--~~~~ 169 (396)
+..++..+|++++|+|+.++...++.+++..+...++|.+ +++||+|+.+.. .+....++.++++.++... ...+
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDRPDAR--PEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC--HHHHHHHHHHHHHHhCCccccCccC
Confidence 9999999999999999999888888888887777899955 468999997531 2233345666665544322 2568
Q ss_pred EEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 170 ~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
++++||++|.+....-...+++.+|++.|.+++|.|
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHhcCCCC
Confidence 999999998764331111468999999999988865
No 71
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.94 E-value=3.3e-25 Score=202.96 Aligned_cols=129 Identities=33% Similarity=0.441 Sum_probs=112.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhc--CCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKF--GGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~--~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 91 (396)
||+++||+|||||||+++|+....... +......+.+|..++|++||+|++.....+++.+..++|||||||.+|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 689999999999999999986443211 111223467999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 92 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
+..++..+|++++|||+.+|...++.+++..+...++|.++ ++||+|+.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~iv-viNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIA-FVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEE-EEECCCCCCC
Confidence 99999999999999999999999999999999999999665 6899998753
No 72
>KOG0465|consensus
Probab=99.93 E-value=6.3e-26 Score=216.61 Aligned_cols=270 Identities=24% Similarity=0.330 Sum_probs=202.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhh---hhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLS---KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~---~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~ 86 (396)
+...||++.-|.||||||+.++.+.-.. ..+..... ...+|..+.||+||+|+.++...+.+.+.++++||||||-
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~-~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG-GATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV 115 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccC-ceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence 4567999999999999999999864321 11111111 3468999999999999999988888889999999999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHH--HHHHHHHH------------
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE--ELLELVEI------------ 152 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~--~~~~~i~~------------ 152 (396)
+|.-+..++++..|++++|+|+..|.+.||...+..++..++|.+. .+||||..... ...+.+..
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~-FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiP 194 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRIC-FINKMDRMGASPFRTLNQIRTKLNHKPAVVQIP 194 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEE-EEehhhhcCCChHHHHHHHHhhcCCchheeEcc
Confidence 9999999999999999999999999999999999999999999776 57999975421 11100000
Q ss_pred -----------------------------------------------HH--------------------------HHHHh
Q psy15217 153 -----------------------------------------------EI--------------------------RELLN 159 (396)
Q Consensus 153 -----------------------------------------------~~--------------------------~~~l~ 159 (396)
++ ...++
T Consensus 195 ig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIR 274 (721)
T KOG0465|consen 195 IGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIR 274 (721)
T ss_pred ccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHH
Confidence 00 00001
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC--------------------CCC-CceeEEEE
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR--------------------AID-GAFLLPVE 218 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~--------------------~~~-~~~~~~i~ 218 (396)
+.-+...-+|++..||+.+ .|+..||+++.++||.|.+ ..+ .||....+
T Consensus 275 r~Ti~r~fvPVl~GSAlKN----------kGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAF 344 (721)
T KOG0465|consen 275 RATIKRSFVPVLCGSALKN----------KGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAF 344 (721)
T ss_pred HHHhhcceeeEEechhhcc----------cCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEE
Confidence 1111123479999999886 5889999999999998743 012 26666555
Q ss_pred EEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecc----eeeCeeecCCeEEEEecccCccCCCCCeE
Q psy15217 219 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDVERGQV 294 (396)
Q Consensus 219 ~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~----~~~~~a~~G~~v~l~l~~~~~~~i~~G~v 294 (396)
+...-+. |..-+-|+.+|+|+.||.|+-. +.+.++++.-+-+.| ++++++.|||++++ -|+ +...||+
T Consensus 345 Kle~g~f-GqLTyvRvYqG~L~kG~~iyN~--rtgKKvrv~RL~rmHa~~medV~~v~AG~I~al--fGi---dcasGDT 416 (721)
T KOG0465|consen 345 KLEEGRF-GQLTYVRVYQGTLSKGDTIYNV--RTGKKVRVGRLVRMHANDMEDVNEVLAGDICAL--FGI---DCASGDT 416 (721)
T ss_pred EeeecCc-cceEEEEEeeeeecCCcEEEec--CCCceeEhHHHhHhcccccchhhhhhccceeee--ecc---ccccCce
Confidence 5554444 8888899999999999999854 445666665543333 68999999999988 454 7889999
Q ss_pred EecCC
Q psy15217 295 LAKPG 299 (396)
Q Consensus 295 l~~~~ 299 (396)
+.+..
T Consensus 417 ftd~~ 421 (721)
T KOG0465|consen 417 FTDKQ 421 (721)
T ss_pred eccCc
Confidence 99773
No 73
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.93 E-value=9.6e-25 Score=196.53 Aligned_cols=181 Identities=31% Similarity=0.451 Sum_probs=142.2
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhc--CCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKF--GGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~--~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 91 (396)
||+++||+|+|||||+++|+....... +......+.+|..+.|+++|+|+......+++.+..++|||||||.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 689999999999999999987643321 111223456899999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCC--HHHHHHHHHHHHHH-------------
Q psy15217 92 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD--DEELLELVEIEIRE------------- 156 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~--~~~~~~~i~~~~~~------------- 156 (396)
+..+++.+|++++|+|+.++...++.+++..+...++|.++ ++||+|+.. .++.++.+++.+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~ii-vvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~ 159 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTII-FVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPN 159 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE-EEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeee
Confidence 99999999999999999999999999999999999999655 689999875 33333333322210
Q ss_pred -------------------------HHhhcCC--------------CCCCCeEEEecccccccCCCCCCCCCcHHHHHHH
Q psy15217 157 -------------------------LLNKYEF--------------PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKA 197 (396)
Q Consensus 157 -------------------------~l~~~~~--------------~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~ 197 (396)
++..-.+ .+.-+|++..||.++ .|+..|+++
T Consensus 160 ~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~----------~Gv~~ll~~ 229 (237)
T cd04168 160 ICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKG----------IGIEELLEG 229 (237)
T ss_pred eeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCC----------cCHHHHHHH
Confidence 0100000 123478889999887 589999999
Q ss_pred hhhhCCCC
Q psy15217 198 LDTYIPTP 205 (396)
Q Consensus 198 l~~~l~~~ 205 (396)
+..++|.|
T Consensus 230 ~~~~~p~~ 237 (237)
T cd04168 230 ITKLFPTS 237 (237)
T ss_pred HHHhcCCC
Confidence 99998865
No 74
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.92 E-value=9.3e-24 Score=182.85 Aligned_cols=174 Identities=27% Similarity=0.383 Sum_probs=131.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEE-----eeCCeeEEEEecCChhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY-----ETKARHYAHVDCPGHAD 87 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~-----~~~~~~~~iiDtpG~~~ 87 (396)
.||+++|++++|||||+++|++........ ....+.++..+.|+.+|+|.......+ +.....+.|||||||++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKR-EMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcC-CCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 379999999999999999999753221111 112346788899999999987665444 33456688999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 167 (396)
|...+..++..+|++++|+|++++...++.+++..+...++| +++++||+|+.+... .....++. +.++++ .
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~--~~~~~~~~---~~~~~~--~ 151 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLE-IIPVINKIDLPSADP--ERVKQQIE---DVLGLD--P 151 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCCH--HHHHHHHH---HHhCCC--c
Confidence 999999999999999999999998888888888777778888 555689999865311 11222333 333442 2
Q ss_pred CeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 168 ~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
.+++++||++| .++++|++++.+.+|.|
T Consensus 152 ~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 152 SEAILVSAKTG----------LGVEDLLEAIVERIPPP 179 (179)
T ss_pred ccEEEeeccCC----------CCHHHHHHHHHhhCCCC
Confidence 35999999997 68999999999888765
No 75
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.92 E-value=7.8e-24 Score=188.55 Aligned_cols=186 Identities=24% Similarity=0.346 Sum_probs=138.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhc---CCccccccccCCChhHhhcCceEEeeeeEEee-----CCeeEEEEecCC
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKF---GGEAKSYDQIDAAPEEKARGITINTAHIEYET-----KARHYAHVDCPG 84 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~---~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-----~~~~~~iiDtpG 84 (396)
.||+++||+|+|||||+++|+....... .......+++|..+.|+++|+|+......+.. ....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 3799999999999999999997654332 22333345689999999999999876665543 246789999999
Q ss_pred hhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCC------HH---HHHHHHHHHHH
Q psy15217 85 HADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD------DE---ELLELVEIEIR 155 (396)
Q Consensus 85 ~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~------~~---~~~~~i~~~~~ 155 (396)
|.+|...+..++..+|++++|+|+.++...++.+++..+...++| +++++||+|++. .. +.++.+.+++.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n 159 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDRLILELKLPPNDAYFKLRHIIDEVN 159 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCcccccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888888888888778888 455689999861 21 34445556777
Q ss_pred HHHhhcCCCC------CCCeEEEecccccccCCCCCCCC----CcHHHHHHHhhhhCCCC
Q psy15217 156 ELLNKYEFPG------NDIPIIKGSAKLALEGDTGPLGE----QSILSLSKALDTYIPTP 205 (396)
Q Consensus 156 ~~l~~~~~~~------~~~~~i~~Sa~~g~~~~~~~~~~----~~~~~Ll~~l~~~l~~~ 205 (396)
.+++.+++++ ....++..|++.+ |+.. .++-+|++.+.+.+|.|
T Consensus 160 ~~~~~~~~~~~~~~~p~~~nv~~~s~~~~------w~~~~~~~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 160 NIIASFSTTLSFLFSPENGNVCFASSKFG------FCFTLESFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHHhcCCCceEeccCCCeEEEEecCCC------eEEecHHHHhhhhHHHHHHhhCCCC
Confidence 8887776632 1222556666654 5432 24557888888877765
No 76
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=1.7e-23 Score=178.24 Aligned_cols=162 Identities=44% Similarity=0.661 Sum_probs=127.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC-CeeEEEEecCChhhhHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-ARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~~~~~ 91 (396)
++|+++|++++|||||+++|++.. .+..+.+..+++|++..+..+... +..+.+|||||+++|...
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~-------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 67 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIE-------------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKN 67 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcc-------------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHH
Confidence 378999999999999999998531 233455666788888777666665 778999999999999998
Q ss_pred HHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15217 92 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 171 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i 171 (396)
+..++..+|++++|+|++++...++.+++..+...+.+++++++||+|+.+... .+....++.+.++..+. ...+++
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~ 144 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDW-LELVEEEIRELLAGTFL--ADAPIF 144 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHH-HHHHHHHHHHHHHhcCc--CCCcEE
Confidence 988899999999999999988889999888877778744777889999987532 22333456666654332 246899
Q ss_pred EecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 172 KGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 172 ~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
++||+++ .++.++++.+..
T Consensus 145 ~~Sa~~~----------~~v~~l~~~l~~ 163 (164)
T cd04171 145 PVSAVTG----------EGIEELKEYLDE 163 (164)
T ss_pred EEeCCCC----------cCHHHHHHHHhh
Confidence 9999997 589999988754
No 77
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.92 E-value=2.1e-23 Score=190.89 Aligned_cols=131 Identities=30% Similarity=0.431 Sum_probs=111.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCC-c-----cccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGG-E-----AKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~-~-----~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~ 85 (396)
..||+++||+|+|||||+++|+.......+. . ......+|..+.|++||+++..+...+++.+..+++||||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 3689999999999999999998653322110 0 123346899999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
.+|...+..++..+|++++|+|+..+...++..++..+...++|.+ +++||+|+...
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~i-ivvNK~D~~~a 138 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPII-TFINKLDREGR 138 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEE-EEEECCccCCC
Confidence 9999999999999999999999999999999999988888899954 56899998654
No 78
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.92 E-value=3.5e-23 Score=180.51 Aligned_cols=180 Identities=42% Similarity=0.615 Sum_probs=144.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~ 93 (396)
+|+++|.+|+|||||+++|++...............++....+..+++|++.....++.....+.||||||+.+|...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999876544433333334567788889999999888778888888999999999999999999
Q ss_pred hhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC---------C
Q psy15217 94 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF---------P 164 (396)
Q Consensus 94 ~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~---------~ 164 (396)
..+..+|++++|+|+.++...+..+++..+...+.| +++++||+|+..+++ .+....++.+.++..+. .
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDRVGEED-LEEVLREIKELLGLIGFISTKEEGTRN 158 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCCcchhc-HHHHHHHHHHHHccccccchhhhhccc
Confidence 999999999999999998888888888888887888 555789999987433 23334456666665443 2
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
....+++++||+++ .++.++++++...+|+|
T Consensus 159 ~~~~~v~~~Sa~~g----------~gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 159 GLLVPIVPGSALTG----------IGVEELLEAIVEHLPPP 189 (189)
T ss_pred CCcceEEEEecccC----------cCHHHHHHHHHhhCCCC
Confidence 34689999999997 58999999999988754
No 79
>KOG1144|consensus
Probab=99.90 E-value=2.2e-23 Score=202.47 Aligned_cols=230 Identities=27% Similarity=0.307 Sum_probs=164.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEe------------------eC
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE------------------TK 73 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~------------------~~ 73 (396)
...++|+||+|+|||-|+..|.+.....+. ..|+|..+...+|+ ..
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqege----------------aggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~k 538 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGE----------------AGGITQQIGATYFPAENIREKTKELKKDAKKRLK 538 (1064)
T ss_pred CceEEEeecccccchHHHHHhhcccccccc----------------ccceeeeccccccchHHHHHHHHHHHhhhhhhcC
Confidence 456899999999999999998764322221 12455444333221 12
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC-CH-----HHHH
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV-DD-----EELL 147 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~-~~-----~~~~ 147 (396)
-..+.+||||||+.|.....+|.+.||.+|||||..+|+.+||.|.+.+++..+.| |||++||+|.. +| ..++
T Consensus 539 vPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktp-FivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 539 VPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTP-FIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred CCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCC-eEEeehhhhhhcccccCCCchHH
Confidence 23478999999999999999999999999999999999999999999999999999 66699999964 32 1111
Q ss_pred HH-------HHHHHHH-------HHhhcCCC----------CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 148 EL-------VEIEIRE-------LLNKYEFP----------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 148 ~~-------i~~~~~~-------~l~~~~~~----------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+. +..++.. -+.+.|++ +..+.++|+||..| +|+.+|+-+|.++..
T Consensus 618 ~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sG----------eGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISG----------EGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccC----------CCcHHHHHHHHHHHH
Confidence 11 1111111 12222332 23577899999998 689999988877432
Q ss_pred CCC---CCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCc--------------eeEEEEEEEecce
Q psy15217 204 TPN---RAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDT--------------VKTTCTGVEMFRK 266 (396)
Q Consensus 204 ~~~---~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~--------------~~~~v~si~~~~~ 266 (396)
... -.....+.+.|.++-.++|.|+.+-..+..|.|+.||.|.+++..+. ...+|++-.+|+.
T Consensus 688 k~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhk 767 (1064)
T KOG1144|consen 688 KTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHK 767 (1064)
T ss_pred HHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehh
Confidence 110 01235677889999999999999999999999999999999865432 2356777666665
Q ss_pred ee
Q psy15217 267 LL 268 (396)
Q Consensus 267 ~~ 268 (396)
.+
T Consensus 768 Ev 769 (1064)
T KOG1144|consen 768 EV 769 (1064)
T ss_pred Hh
Confidence 44
No 80
>KOG0469|consensus
Probab=99.90 E-value=6.7e-23 Score=191.61 Aligned_cols=288 Identities=23% Similarity=0.313 Sum_probs=201.3
Q ss_pred ccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEE---------------
Q psy15217 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY--------------- 70 (396)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~--------------- 70 (396)
|.+.+...|+.++.|+|||||||...|.....-.....+-...++|.-+.|++||+||.+....+
T Consensus 13 M~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 13 MDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred hccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 45666788999999999999999999987654333333333346899999999999998765433
Q ss_pred -eeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC------CH
Q psy15217 71 -ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV------DD 143 (396)
Q Consensus 71 -~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~------~~ 143 (396)
+.++.-+++||.|||-+|.++...+++..|++++|||+-+|+.-||...|..+....|..++ ++||||.. +.
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvl-v~NK~DRAlLELq~~~ 171 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVL-VMNKMDRALLELQLSQ 171 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceE-EeehhhHHHHhhcCCH
Confidence 22356688999999999999999999999999999999999999999999999998888776 57999953 34
Q ss_pred HHHHHHHHHHHH---HHHhhcCCC--------CCCCeEEEeccccccc--------------------------C-----
Q psy15217 144 EELLELVEIEIR---ELLNKYEFP--------GNDIPIIKGSAKLALE--------------------------G----- 181 (396)
Q Consensus 144 ~~~~~~i~~~~~---~~l~~~~~~--------~~~~~~i~~Sa~~g~~--------------------------~----- 181 (396)
++.++.+...++ ..+..++.. +..-.+-+.|+++||. +
T Consensus 172 EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~ 251 (842)
T KOG0469|consen 172 EELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFN 251 (842)
T ss_pred HHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccC
Confidence 455544332222 111222210 1111233456655543 0
Q ss_pred --CCCCCC--------------------------------------------------------------------CCcH
Q psy15217 182 --DTGPLG--------------------------------------------------------------------EQSI 191 (396)
Q Consensus 182 --~~~~~~--------------------------------------------------------------------~~~~ 191 (396)
..+|.. -+..
T Consensus 252 ~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAa 331 (842)
T KOG0469|consen 252 PKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAA 331 (842)
T ss_pred ccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcchH
Confidence 001110 0234
Q ss_pred HHHHHHhhhhCCCCC-------------------------CCCCCceeEEEEEEEeeCCCceE-EEEEEEeeEEecCCEE
Q psy15217 192 LSLSKALDTYIPTPN-------------------------RAIDGAFLLPVEDVFSISGRGTV-VTGRVERGIVRVGEEL 245 (396)
Q Consensus 192 ~~Ll~~l~~~l~~~~-------------------------~~~~~~~~~~i~~~~~~~~~G~v-~~g~v~~G~l~~g~~v 245 (396)
+.|++.|.-++|.|. ++.+.|+.|+|+.....+..|.. ..|||.+|.+..|+++
T Consensus 332 dallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~Kv 411 (842)
T KOG0469|consen 332 DALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKV 411 (842)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEE
Confidence 667777777777762 25679999999999887778764 5899999999999999
Q ss_pred EEeecC--Cc--eeEEEEEEEe-------cceeeCeeecCCeEEEEecccCccCCCCCeEEe
Q psy15217 246 EIIGIK--DT--VKTTCTGVEM-------FRKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296 (396)
Q Consensus 246 ~~~p~~--~~--~~~~v~si~~-------~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 296 (396)
++...+ ++ ...-.|+|++ +-++++...+|.++++ -|++.--++.|-+-.
T Consensus 412 RiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGl--vGvDqfLvKtGTiTt 471 (842)
T KOG0469|consen 412 RIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGL--VGVDQFLVKTGTITT 471 (842)
T ss_pred EEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEE--eehhHhhhccCceee
Confidence 997321 11 1123344442 3478999999999998 577766666665543
No 81
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.88 E-value=3.8e-21 Score=177.28 Aligned_cols=129 Identities=29% Similarity=0.389 Sum_probs=109.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcC--CccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFG--GEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 91 (396)
||+++||+|+|||||+++|+.......+ ......+.+|..++|+++++|+......+++.+..+++||||||.+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 6899999999999999999865332211 11122456788999999999999888888888999999999999999999
Q ss_pred HHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 92 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
+..++..+|++++|+|+..+...++..++..+...++|.++ ++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~ii-vvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRII-FINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE-EEECCccCCC
Confidence 99999999999999999999999999999999999999666 6799998753
No 82
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.86 E-value=3.6e-20 Score=158.49 Aligned_cols=159 Identities=38% Similarity=0.461 Sum_probs=116.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC---CeeEEEEecCChhhhHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK---ARHYAHVDCPGHADYIK 90 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~~~iiDtpG~~~~~~ 90 (396)
.|+++|+.++|||||+++|+...... ....++|.+.....++.. +..+.+|||||+..|..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 65 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA----------------GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN 65 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc----------------ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH
Confidence 48999999999999999998542111 122356665555555543 67899999999999988
Q ss_pred HHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC-CCCCCCe
Q psy15217 91 NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE-FPGNDIP 169 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~-~~~~~~~ 169 (396)
.+..++..+|++++|+|++++...++.+.+..+...++|. ++++||+|+.+.+. +.+...+..+..... ......+
T Consensus 66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~-ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPF-IVALNKIDKPNANP--ERVKNELSELGLQGEDEWGGDVQ 142 (168)
T ss_pred HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCE-EEEEEceecccccH--HHHHHHHHHhhccccccccCcCc
Confidence 8888889999999999999988889999998888899995 55689999975421 122222322221110 0123578
Q ss_pred EEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 170 ~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
++++||+++ .++.+|++++.+.
T Consensus 143 ~~~~Sa~~~----------~gi~~l~~~l~~~ 164 (168)
T cd01887 143 IVPTSAKTG----------EGIDDLLEAILLL 164 (168)
T ss_pred EEEeecccC----------CCHHHHHHHHHHh
Confidence 999999997 5899999998764
No 83
>KOG0467|consensus
Probab=99.85 E-value=4.1e-19 Score=173.98 Aligned_cols=172 Identities=24% Similarity=0.329 Sum_probs=131.9
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
......|++++.|+|||||||..+|.....-.....+-.-.++|..++|..||+|...+...+...++.+++||+|||-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 44567899999999999999999998643322211121223689999999999999999888877889999999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCC------CCHHHHHHHHH---HHHHHHH
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM------VDDEELLELVE---IEIRELL 158 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~------~~~~~~~~~i~---~~~~~~l 158 (396)
|.....++.+.+|+++++||+.+|+..||...++.+..-+...++ |+||||. ..+.+.++.+. +++....
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~l-vinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i 163 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPIL-VINKIDRLITELKLSPQEAYEHLLRVIEQVNGVI 163 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEE-EEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999999999999998665 6899993 23344343322 1222222
Q ss_pred h-------------------hcCCCCCCCeEEEeccccccc
Q psy15217 159 N-------------------KYEFPGNDIPIIKGSAKLALE 180 (396)
Q Consensus 159 ~-------------------~~~~~~~~~~~i~~Sa~~g~~ 180 (396)
. ..-+.+.+-.++..||..|+.
T Consensus 164 ~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~ 204 (887)
T KOG0467|consen 164 GQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWG 204 (887)
T ss_pred HHhhcchhhccchhhhhhhcceeecCCCCcEEEEEeccccc
Confidence 2 222334556789999998765
No 84
>KOG0464|consensus
Probab=99.85 E-value=4.4e-22 Score=182.47 Aligned_cols=271 Identities=24% Similarity=0.340 Sum_probs=187.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhc--CCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKF--GGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~--~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
..||+++.|+|+||||...+++......- +.......+.|....||+||+|+.++...|++.++.+++||||||-+|.
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 46999999999999999999986543322 2222334567889999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHH--HHHHHHHHHHH------------
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE--ELLELVEIEIR------------ 155 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~--~~~~~i~~~~~------------ 155 (396)
-+..+.++..|+++.|+|++.|+.+||...|..+...++|... ++||||...++ ...+.+.+.+.
T Consensus 117 leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~-finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi~e 195 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHC-FINKMDKLAANFENAVDSIEEKLGAKALKLQLPIGE 195 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhh-hhhhhhhhhhhhhhHHHHHHHHhCCceEEEEecccc
Confidence 9999999999999999999999999999999999999999665 68999986541 11111211110
Q ss_pred ---------H---------------------------------------------------------HHhhcCCC-----
Q psy15217 156 ---------E---------------------------------------------------------LLNKYEFP----- 164 (396)
Q Consensus 156 ---------~---------------------------------------------------------~l~~~~~~----- 164 (396)
+ ++.++.-+
T Consensus 196 ak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~ 275 (753)
T KOG0464|consen 196 AKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKID 275 (753)
T ss_pred cccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccC
Confidence 0 00000000
Q ss_pred --------------CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCC-------CCceeEEEEEEEee
Q psy15217 165 --------------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAI-------DGAFLLPVEDVFSI 223 (396)
Q Consensus 165 --------------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~-------~~~~~~~i~~~~~~ 223 (396)
....|+...||.++ .|+..|++++.-++|.|.... ...+....+.+...
T Consensus 276 a~elksai~~lt~aq~a~~i~cgsaikn----------kgiqplldavtmylpspeernyeflqwykddlcalafkvlhd 345 (753)
T KOG0464|consen 276 AEELKSAIHELTCAQKAAPILCGSAIKN----------KGIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLHD 345 (753)
T ss_pred HHHHHHHHHHHhhhhhhcceehhhhhcc----------cCccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhhhhcc
Confidence 01245555555553 578889999999999886532 23344445566677
Q ss_pred CCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEe----cceeeCeeecCCeEEEEecccCccCCCCCeEEecCC
Q psy15217 224 SGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEM----FRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (396)
Q Consensus 224 ~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~----~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (396)
+.+|..++.++.+|+++.+-.+.-. ++...-.+..+.. .+..++++.||.+ ++.. |+. .-..||.++..+
T Consensus 346 kqrg~l~fmriysgsi~~~~ai~ni--n~~~se~~~kl~~pfade~~~i~qlsagni-alt~-glk--~tatgdtivask 419 (753)
T KOG0464|consen 346 KQRGPLSFMRIYSGSIHNNLAIFNI--NGMCSEGILKLFLPFADEHREIEQLSAGNI-ALTA-GLK--HTATGDTIVASK 419 (753)
T ss_pred cccCceeEEEEecccccCceeeeec--ccccccchHhhhccchhhhhhhhhcccccE-EEEe-cce--eeccCCeEEecc
Confidence 8899999999999999998777532 2211111111111 2345677888864 3332 332 234677776443
No 85
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.84 E-value=1.3e-20 Score=156.69 Aligned_cols=148 Identities=25% Similarity=0.341 Sum_probs=101.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh----
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY---- 88 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~---- 88 (396)
++|+++|.+++|||||+|+|++.....+. -.|+|++.....++..+..+.|+|+||...+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n----------------~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s 64 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGN----------------WPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS 64 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEE----------------STTSSSEEEEEEEEETTEEEEEEE----SSSSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecC----------------CCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC
Confidence 58999999999999999999987533221 1288988888888889999999999993222
Q ss_pred --HHHHHhh--hhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 89 --IKNMITG--AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 89 --~~~~~~~--~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
.+-.... ...+|++++|+||++ ..+....+..+..+|+| +++++||+|+...... ..+...+.+.++
T Consensus 65 ~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P-~vvvlN~~D~a~~~g~----~id~~~Ls~~Lg-- 135 (156)
T PF02421_consen 65 EEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIP-VVVVLNKMDEAERKGI----EIDAEKLSERLG-- 135 (156)
T ss_dssp HHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSS-EEEEEETHHHHHHTTE----EE-HHHHHHHHT--
T ss_pred cHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCC-EEEEEeCHHHHHHcCC----EECHHHHHHHhC--
Confidence 1112222 247999999999986 34455555666778999 5557899998654221 111223333333
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHh
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKAL 198 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l 198 (396)
+|++++||.++ .|+++|++++
T Consensus 136 ---~pvi~~sa~~~----------~g~~~L~~~I 156 (156)
T PF02421_consen 136 ---VPVIPVSARTG----------EGIDELKDAI 156 (156)
T ss_dssp ---S-EEEEBTTTT----------BTHHHHHHHH
T ss_pred ---CCEEEEEeCCC----------cCHHHHHhhC
Confidence 68999999997 6899998875
No 86
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=5.5e-20 Score=173.22 Aligned_cols=160 Identities=26% Similarity=0.363 Sum_probs=130.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh-----
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH----- 85 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~----- 85 (396)
..++|+++|.+++|||||+|+|++....... ...|+|.+.-...++.+++.|.++||+|-
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~---------------~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~k 241 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS---------------DIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGK 241 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEec---------------CCCCccccceeeeEEECCeEEEEEECCCCCcccc
Confidence 5799999999999999999999976433222 23399999999999999999999999993
Q ss_pred -----hhh-HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH-HHHHHHHHHHHHHHH
Q psy15217 86 -----ADY-IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELL 158 (396)
Q Consensus 86 -----~~~-~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~~~~~~i~~~~~~~l 158 (396)
+.| ..-+...+..+|.+++|+||.+|...|....+.++...|.+.+| ++||+|+.+. +...+..+.+++..+
T Consensus 242 i~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vI-vvNKWDl~~~~~~~~~~~k~~i~~~l 320 (444)
T COG1160 242 ITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVI-VVNKWDLVEEDEATMEEFKKKLRRKL 320 (444)
T ss_pred cccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEE-EEEccccCCchhhHHHHHHHHHHHHh
Confidence 334 33455667789999999999999999999999999999999665 5799999874 355667777888888
Q ss_pred hhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 159 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
..+++ .|++++||+++. ++..|++++..
T Consensus 321 ~~l~~----a~i~~iSA~~~~----------~i~~l~~~i~~ 348 (444)
T COG1160 321 PFLDF----APIVFISALTGQ----------GLDKLFEAIKE 348 (444)
T ss_pred ccccC----CeEEEEEecCCC----------ChHHHHHHHHH
Confidence 87777 799999999984 55556655544
No 87
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=1.1e-19 Score=179.06 Aligned_cols=162 Identities=26% Similarity=0.294 Sum_probs=120.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
...++|+++|++++|||||+++|++..... .....|+|.+.....++.++..+.+|||||+.++.
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~---------------~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVI---------------VSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKG 234 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeee---------------cCCCCCceECcEeEEEEECCcEEEEEECCCccccc
Confidence 356899999999999999999998642111 11234788877777777788899999999964432
Q ss_pred -----------HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy15217 90 -----------KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (396)
Q Consensus 90 -----------~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l 158 (396)
..+...+..+|++++|+|+.++...++.+.+..+...+.| +|+++||+|+.+..+..+.+..++...+
T Consensus 235 ~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~ 313 (429)
T TIGR03594 235 KVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKA-LVIVVNKWDLVKDEKTREEFKKELRRKL 313 (429)
T ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEECcccCCCHHHHHHHHHHHHHhc
Confidence 2234567889999999999999999999988888888988 5557899999832334445555566555
Q ss_pred hhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 159 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
...+ .+|++++||++| .++.++++++...
T Consensus 314 ~~~~----~~~vi~~SA~~g----------~~v~~l~~~i~~~ 342 (429)
T TIGR03594 314 PFLD----FAPIVFISALTG----------QGVDKLLDAIDEV 342 (429)
T ss_pred ccCC----CCceEEEeCCCC----------CCHHHHHHHHHHH
Confidence 4443 378999999998 4677777666543
No 88
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=1.7e-19 Score=161.15 Aligned_cols=161 Identities=23% Similarity=0.218 Sum_probs=117.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh-----
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH----- 85 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~----- 85 (396)
.---|+++|.+++|||||+|+|++.......... .+|...-...+..++.++.|+||||.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~---------------QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~ 69 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKP---------------QTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH 69 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCc---------------chhhhheeEEEEcCCceEEEEeCCCCCCcch
Confidence 3457999999999999999999987654433222 34444444455667889999999992
Q ss_pred ---hhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 86 ---ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 86 ---~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
+...++...++..+|++++|||+.++....+...+..++..+.|.++ ++||+|...++.....+ ...+-....
T Consensus 70 ~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil-~iNKID~~~~~~~l~~~---~~~~~~~~~ 145 (298)
T COG1159 70 ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVIL-VVNKIDKVKPKTVLLKL---IAFLKKLLP 145 (298)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEE-EEEccccCCcHHHHHHH---HHHHHhhCC
Confidence 12234455567789999999999998888888888888887789655 68999998875422222 222223333
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
+ ..++|+||++| .+++.|++.+..++|.
T Consensus 146 f----~~ivpiSA~~g----------~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 146 F----KEIVPISALKG----------DNVDTLLEIIKEYLPE 173 (298)
T ss_pred c----ceEEEeecccc----------CCHHHHHHHHHHhCCC
Confidence 3 47999999998 6899999999998874
No 89
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=4e-19 Score=175.26 Aligned_cols=160 Identities=26% Similarity=0.328 Sum_probs=120.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh--
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD-- 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~-- 87 (396)
...++|+++|++|+|||||+++|++.... ......|+|.+.....++.++..+.+|||||+.+
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~---------------~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~ 235 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERV---------------IVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKG 235 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCce---------------eecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCc
Confidence 45799999999999999999999864211 1122348888887777778888999999999532
Q ss_pred --------hH-HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy15217 88 --------YI-KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (396)
Q Consensus 88 --------~~-~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l 158 (396)
|. ..+..++..+|++++|+|+.++...|+.+.+..+...+.|. ++++||+|+.+.+ ..+.+..++...+
T Consensus 236 ~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~-ivv~NK~Dl~~~~-~~~~~~~~~~~~l 313 (435)
T PRK00093 236 KVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRAL-VIVVNKWDLVDEK-TMEEFKKELRRRL 313 (435)
T ss_pred chhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcE-EEEEECccCCCHH-HHHHHHHHHHHhc
Confidence 22 33456778999999999999999999999988888889885 4568999998653 3344555566555
Q ss_pred hhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 159 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
.... .+|++++||+++ .++.++++.+..
T Consensus 314 ~~~~----~~~i~~~SA~~~----------~gv~~l~~~i~~ 341 (435)
T PRK00093 314 PFLD----YAPIVFISALTG----------QGVDKLLEAIDE 341 (435)
T ss_pred cccc----CCCEEEEeCCCC----------CCHHHHHHHHHH
Confidence 5443 379999999998 366666666544
No 90
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.82 E-value=1.8e-19 Score=154.06 Aligned_cols=161 Identities=19% Similarity=0.171 Sum_probs=104.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~ 93 (396)
||+++|+.|+|||||+++|+...... .+ ... .....|+......+..++..+.+|||||+++|...+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~-~~---------~~~--~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY-KG---------LPP--SKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc-cC---------Ccc--cccCCccccceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 58999999999999999998642210 00 000 1113344444445566788999999999999998888
Q ss_pred hhhhcCCEEEEEEecCCCC-ChhHHHHHHHHH----HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15217 94 TGAAQMDGAILVCSAADGP-MPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (396)
Q Consensus 94 ~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~----~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 168 (396)
..+..+|++++|+|+.+.. .......+..+. ..++| +++++||+|+.+... .+.+...+.......+. ..+
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~--~~~ 144 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDLPDALS-VEEIKEVFQDKAEEIGR--RDC 144 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEccccccCCC-HHHHHHHhccccccccC--Cce
Confidence 8899999999999998632 222223332222 24788 555789999865411 12222222222222222 346
Q ss_pred eEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 169 ~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
+++++||++| .++++++++|..
T Consensus 145 ~~~~~Sa~~g----------~gv~e~~~~l~~ 166 (167)
T cd04160 145 LVLPVSALEG----------TGVREGIEWLVE 166 (167)
T ss_pred EEEEeeCCCC----------cCHHHHHHHHhc
Confidence 8999999997 689999998854
No 91
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.82 E-value=6.8e-19 Score=162.32 Aligned_cols=156 Identities=19% Similarity=0.143 Sum_probs=105.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh------
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD------ 87 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~------ 87 (396)
+|+++|.+|+|||||+++|++........ ..++|.+.....+..++..+.|+||||+.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~---------------~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~ 66 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSP---------------KAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLN 66 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCC---------------CCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHH
Confidence 58999999999999999999753221110 113343332223334556799999999643
Q ss_pred --hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 88 --YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 88 --~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
+.+.+...+..+|++++|+|++.....+ ...+..+...+.|. ++++||+|+.+.+... ..+..+....++
T Consensus 67 ~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~-ilV~NK~Dl~~~~~~~----~~~~~~~~~~~~-- 138 (270)
T TIGR00436 67 RLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPV-VLTRNKLDNKFKDKLL----PLIDKYAILEDF-- 138 (270)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCE-EEEEECeeCCCHHHHH----HHHHHHHhhcCC--
Confidence 1333456678999999999999865443 44555666678885 4568999998653322 223333333333
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
.+++++||++| .|+++|++++.+.+|.
T Consensus 139 --~~v~~iSA~~g----------~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 139 --KDIVPISALTG----------DNTSFLAAFIEVHLPE 165 (270)
T ss_pred --CceEEEecCCC----------CCHHHHHHHHHHhCCC
Confidence 37999999997 6899999999998864
No 92
>PRK15494 era GTPase Era; Provisional
Probab=99.82 E-value=8.8e-19 Score=166.10 Aligned_cols=175 Identities=18% Similarity=0.138 Sum_probs=118.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh--
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD-- 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~-- 87 (396)
++..+|+++|++|+|||||+++|++....... ...+.|.+.....+..++..+.||||||..+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs---------------~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~ 114 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT---------------PKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeecc---------------CCCCCccCcEEEEEEeCCeEEEEEECCCcCCCc
Confidence 34579999999999999999999865321110 1124454444445566778899999999732
Q ss_pred ------hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 88 ------YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 88 ------~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
+.+.....+..+|++++|+|+.++........+..+...+.|.++ ++||+|+.+. . . .++.+.+...
T Consensus 115 ~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~Il-ViNKiDl~~~-~-~----~~~~~~l~~~ 187 (339)
T PRK15494 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIF-LLNKIDIESK-Y-L----NDIKAFLTEN 187 (339)
T ss_pred ccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEE-EEEhhcCccc-c-H----HHHHHHHHhc
Confidence 223333456789999999999887776666677777777888665 6799999753 1 1 1334444332
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCC------CCCCCceeEEEEE
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN------RAIDGAFLLPVED 219 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~------~~~~~~~~~~i~~ 219 (396)
. ...+++++||++| .|+++|+++|...+|... ..++.|.++.+.+
T Consensus 188 ~---~~~~i~~iSAktg----------~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~e 238 (339)
T PRK15494 188 H---PDSLLFPISALSG----------KNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAE 238 (339)
T ss_pred C---CCcEEEEEeccCc----------cCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHH
Confidence 2 1357999999997 589999999998876422 1244555555443
No 93
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=6.2e-19 Score=166.17 Aligned_cols=153 Identities=21% Similarity=0.250 Sum_probs=122.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh-----
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD----- 87 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~----- 87 (396)
..|+++|.+|+|||||+|+|++....... ...|+|.|..+...++.++.+.+|||+|.+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~---------------D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~ 68 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVS---------------DTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDE 68 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEee---------------cCCCCccCCccceeEEcCceEEEEECCCCCcCCchH
Confidence 57999999999999999999986443321 1239999999999999999999999999542
Q ss_pred h----HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 88 Y----IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 88 ~----~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
+ ...+..++..||++|||||+.+|+.+++.+.+..++..+.|. |+|+||+|....++ ...-+-.+|+
T Consensus 69 l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpv-iLvvNK~D~~~~e~--------~~~efyslG~ 139 (444)
T COG1160 69 LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPV-ILVVNKIDNLKAEE--------LAYEFYSLGF 139 (444)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCE-EEEEEcccCchhhh--------hHHHHHhcCC
Confidence 3 334555677999999999999999999999999999778885 55679999874321 1222334566
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
-..+++||.+| .|+.+|++++...+|
T Consensus 140 ----g~~~~ISA~Hg----------~Gi~dLld~v~~~l~ 165 (444)
T COG1160 140 ----GEPVPISAEHG----------RGIGDLLDAVLELLP 165 (444)
T ss_pred ----CCceEeehhhc----------cCHHHHHHHHHhhcC
Confidence 45899999998 699999999999886
No 94
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=2.1e-18 Score=147.94 Aligned_cols=159 Identities=24% Similarity=0.308 Sum_probs=110.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh---
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY--- 88 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--- 88 (396)
.++|+++|++|+|||||+++|++...... +...+.|.+.....+..++..+.+|||||+.+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 66 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV---------------SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKV 66 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec---------------cCCCCCccCceeeEEEECCeeEEEEECCCCccccch
Confidence 57999999999999999999986421110 112345555544556667778999999996432
Q ss_pred -------H-HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHH-HHHHHHHHHHHHHHh
Q psy15217 89 -------I-KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE-ELLELVEIEIRELLN 159 (396)
Q Consensus 89 -------~-~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~-~~~~~i~~~~~~~l~ 159 (396)
. ..+...+..+|++++|+|+.++...+..+.+..+...+.| +++++||+|+.+.. ...+.+...+.+.+.
T Consensus 67 ~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01895 67 EEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWDLVEKDSKTMKEFKKEIRRKLP 145 (174)
T ss_pred hccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCC-EEEEEeccccCCccHHHHHHHHHHHHhhcc
Confidence 1 2334456789999999999987777776666676667877 45568999997652 223333334444433
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
.. ...+++++||+++ .++.++++++.+
T Consensus 146 ~~----~~~~~~~~Sa~~~----------~~i~~~~~~l~~ 172 (174)
T cd01895 146 FL----DYAPIVFISALTG----------QGVDKLFDAIDE 172 (174)
T ss_pred cc----cCCceEEEeccCC----------CCHHHHHHHHHH
Confidence 22 2368999999997 589999988765
No 95
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.81 E-value=3.9e-19 Score=135.37 Aligned_cols=89 Identities=33% Similarity=0.610 Sum_probs=83.8
Q ss_pred CCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCC
Q psy15217 210 DGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDV 289 (396)
Q Consensus 210 ~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i 289 (396)
+.||+|+|+++|++++.|++++|+|++|.+++||+++++|.+ ..++|+||++++.++++|.|||+|+++|++++..++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~--~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v 79 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG--VTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDI 79 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC--cEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHc
Confidence 569999999999999999999999999999999999999854 789999999999999999999999999999999999
Q ss_pred CCCeEEecCCC
Q psy15217 290 ERGQVLAKPGS 300 (396)
Q Consensus 290 ~~G~vl~~~~~ 300 (396)
++|++||++++
T Consensus 80 ~~G~vl~~~~~ 90 (91)
T cd03693 80 KRGDVAGDSKN 90 (91)
T ss_pred CCcCEEccCCC
Confidence 99999998753
No 96
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=1.1e-18 Score=147.17 Aligned_cols=148 Identities=21% Similarity=0.226 Sum_probs=107.7
Q ss_pred EEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH-----
Q psy15217 16 GTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK----- 90 (396)
Q Consensus 16 ~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~----- 90 (396)
+++|++|+|||||+++|++..... .+...++|.+......+..+..+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 65 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI---------------VEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKE 65 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe---------------ecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHH
Confidence 579999999999999998642110 111235566555566666778899999999888543
Q ss_pred ---HHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15217 91 ---NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (396)
Q Consensus 91 ---~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 167 (396)
.....+..+|++++|+|+.++......+++..+...+.| +++++||+|+.+.... ...+..++.
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~--------~~~~~~~~~---- 132 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKP-VILVVNKVDNIKEEDE--------AAEFYSLGF---- 132 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCC-EEEEEECcccCChHHH--------HHHHHhcCC----
Confidence 444567789999999999987777777777778888888 5557899999876322 122233333
Q ss_pred CeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 168 ~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.+++++|++++ .+++++++++.+.
T Consensus 133 ~~~~~~Sa~~~----------~gv~~l~~~l~~~ 156 (157)
T cd01894 133 GEPIPISAEHG----------RGIGDLLDAILEL 156 (157)
T ss_pred CCeEEEecccC----------CCHHHHHHHHHhh
Confidence 36899999997 5899999998764
No 97
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.80 E-value=4.6e-19 Score=137.12 Aligned_cols=90 Identities=31% Similarity=0.593 Sum_probs=78.6
Q ss_pred CCceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEcc-----C-C--cccccCCCEEEEEEEecceeecc
Q psy15217 301 IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-----K-N--KEMVMPGDNVLITVRLINPIAME 372 (396)
Q Consensus 301 ~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----~-~--~~~l~~g~~~~v~~~~~~p~~~~ 372 (396)
+.++++|+|+|.+|+++ ++|.+||++++|+++.+++|++... . + |+++++||.|.|+|++++|+|++
T Consensus 2 ~k~~~~f~A~v~vl~~~-----~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~~~~~~p~~l~~g~~a~v~l~~~~pi~ve 76 (99)
T PF03143_consen 2 IKAVNRFEAQVIVLDHP-----KPISPGYQPVLHIHTADVPCRIVKIISKIDTGKKKPKFLKPGDRAVVELEFQKPICVE 76 (99)
T ss_dssp SEEEEEEEEEEEESSGS-----S-BETTEEEEEEETTEEEEEEEEEEEEEESTTTEE-SEB-TTEEEEEEEEEEEEEEET
T ss_pred CcccCEEEEEEEEEcCC-----ccccCCCccceEEeeceeeEEEEeeeeccccccccccccccccccccceeeccceeee
Confidence 45689999999999986 6999999999999999999977533 2 2 37999999999999999999999
Q ss_pred cCCeEEEEeCCcEEEEEEEeeec
Q psy15217 373 EGLRFAIREGGRTVGAGVVVKII 395 (396)
Q Consensus 373 ~~~r~~lr~~~~t~~~G~i~~v~ 395 (396)
+++||+|||+|+|+|+|.|++|.
T Consensus 77 ~~~Rf~lR~~~~Tia~G~V~~vi 99 (99)
T PF03143_consen 77 PFSRFILRDGGKTIAVGVVTKVI 99 (99)
T ss_dssp TTTEEEEEETTEEEEEEEEEEE-
T ss_pred cCceEEEccCCeEEEEEEEEEeC
Confidence 99999999999999999999974
No 98
>KOG0468|consensus
Probab=99.80 E-value=1.9e-17 Score=159.97 Aligned_cols=133 Identities=29% Similarity=0.433 Sum_probs=108.2
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCcc-ccccccCCChhHhhcCceEEeeeeEE-----eeCCeeEEEEe
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEA-KSYDQIDAAPEEKARGITINTAHIEY-----ETKARHYAHVD 81 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~-----~~~~~~~~iiD 81 (396)
.+...+|++++||-.||||+|+..|.....-...... ....+.|.+..|++||+++......+ +...+-++++|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 3445789999999999999999999866543332211 11235899999999999998754433 22345678999
Q ss_pred cCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 82 CPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 82 tpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
||||-+|..++...++.+|++++|||+.+|++-+|...+..+-+...| ++||+||+|+.
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~-i~vviNKiDRL 262 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLP-IVVVINKVDRL 262 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCc-EEEEEehhHHH
Confidence 999999999999999999999999999999999999999999988999 66789999963
No 99
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.80 E-value=1.3e-18 Score=149.92 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=105.3
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
.+...++|+++|+.++|||||+++|.+..... ...|+......+..+...+.+|||||++.
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-------------------~~~t~g~~~~~~~~~~~~l~l~D~~G~~~ 70 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDT-------------------ISPTLGFQIKTLEYEGYKLNIWDVGGQKT 70 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCCC-------------------cCCccccceEEEEECCEEEEEEECCCCHH
Confidence 34456899999999999999999998541100 01121122223344567889999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHH----HHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLA----RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~----~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
|...+...+..+|++++|+|+.+.. +....+++..+ ...++| +++++||+|+..... .+++.+.++...
T Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-----~~~~~~~~~~~~ 144 (173)
T cd04154 71 LRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT-LLILANKQDLPGALS-----EEEIREALELDK 144 (173)
T ss_pred HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcccccCCC-----HHHHHHHhCccc
Confidence 8888888888999999999998742 22223333222 124667 555789999975321 123444444332
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
.....++++++||++| .|++++++++.+
T Consensus 145 ~~~~~~~~~~~Sa~~g----------~gi~~l~~~l~~ 172 (173)
T cd04154 145 ISSHHWRIQPCSAVTG----------EGLLQGIDWLVD 172 (173)
T ss_pred cCCCceEEEeccCCCC----------cCHHHHHHHHhc
Confidence 3334678999999998 689999998753
No 100
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=2.9e-18 Score=146.42 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=104.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADY 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~ 88 (396)
..+||+++|+.|+|||||+++|...... .+.....+.+.....+..++ ..+.+|||||+++|
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 65 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFS----------------ERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERF 65 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCc----------------ccCCCccceEEEEEEEEECCEEEEEEEEECCChHHH
Confidence 3589999999999999999999753210 01111222233333344444 46789999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
...+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+....+. ..++...+.+..+.
T Consensus 66 ~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~- 140 (165)
T cd01864 66 RTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQREV---LFEEACTLAEKNGM- 140 (165)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcCC-
Confidence 8888888889999999999987322 222233333333 3567 4556899999754221 11234444454443
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.+++++||++| .++.++++.+.+.
T Consensus 141 ---~~~~e~Sa~~~----------~~v~~~~~~l~~~ 164 (165)
T cd01864 141 ---LAVLETSAKES----------QNVEEAFLLMATE 164 (165)
T ss_pred ---cEEEEEECCCC----------CCHHHHHHHHHHh
Confidence 56899999997 5899999988753
No 101
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=5.2e-18 Score=168.26 Aligned_cols=161 Identities=22% Similarity=0.263 Sum_probs=114.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh-----
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH----- 85 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~----- 85 (396)
..++|+++|++++|||||+++|++..... .+...|+|.+.....++.++..+.||||||.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~---------------~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~ 274 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV---------------VDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVK 274 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc---------------ccCCCCccCCcceEEEEECCEEEEEEECCCcccccc
Confidence 46899999999999999999998642111 1113367776666667778888999999994
Q ss_pred -----hhhHHH-HHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q psy15217 86 -----ADYIKN-MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (396)
Q Consensus 86 -----~~~~~~-~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~ 159 (396)
+.|... ....+..+|++++|+|++++...+..+.+..+...++| +|+|+||+|+.+.+. ...+..++...+.
T Consensus 275 ~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~p-iIiV~NK~Dl~~~~~-~~~~~~~i~~~l~ 352 (472)
T PRK03003 275 QASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRA-LVLAFNKWDLVDEDR-RYYLEREIDRELA 352 (472)
T ss_pred ccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCChhH-HHHHHHHHHHhcc
Confidence 333222 22346789999999999999888888888777778888 555689999986432 2223334444443
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
... ..|++++||++| .++.++++.+...+
T Consensus 353 ~~~----~~~~~~~SAk~g----------~gv~~lf~~i~~~~ 381 (472)
T PRK03003 353 QVP----WAPRVNISAKTG----------RAVDKLVPALETAL 381 (472)
T ss_pred cCC----CCCEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 332 368999999998 46777777665543
No 102
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.78 E-value=1.1e-17 Score=144.87 Aligned_cols=149 Identities=21% Similarity=0.244 Sum_probs=104.1
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhh-hhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh-
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVL-SKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH- 85 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~-~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~- 85 (396)
......+|+++|+.|+|||||+++|++.. .... ....|.|.+...+.. + ..+.+|||||+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~---------------~~~~~~t~~~~~~~~--~-~~~~liDtpG~~ 75 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLART---------------SKTPGRTQLINFFEV--N-DGFRLVDLPGYG 75 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccc---------------cCCCCcceEEEEEEe--C-CcEEEEeCCCCc
Confidence 44567899999999999999999998642 1100 011245555544333 2 36899999995
Q ss_pred ---------hhhHHHHHhhh---hcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHH
Q psy15217 86 ---------ADYIKNMITGA---AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIE 153 (396)
Q Consensus 86 ---------~~~~~~~~~~~---~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~ 153 (396)
++|...+...+ ..+|++++|+|++.+...++.+.+..+...++| +++++||+|+.++.+. +....+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~ 153 (179)
T TIGR03598 76 YAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIP-VLIVLTKADKLKKSEL-NKQLKK 153 (179)
T ss_pred cccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHH-HHHHHH
Confidence 33433333333 356899999999998888888888888888989 5556899999876443 334456
Q ss_pred HHHHHhhcCCCCCCCeEEEecccccc
Q psy15217 154 IRELLNKYEFPGNDIPIIKGSAKLAL 179 (396)
Q Consensus 154 ~~~~l~~~~~~~~~~~~i~~Sa~~g~ 179 (396)
+++.++..+ ...+++++||++|.
T Consensus 154 i~~~l~~~~---~~~~v~~~Sa~~g~ 176 (179)
T TIGR03598 154 IKKALKKDA---DDPSVQLFSSLKKT 176 (179)
T ss_pred HHHHHhhcc---CCCceEEEECCCCC
Confidence 777777653 24689999999984
No 103
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=1.1e-17 Score=164.76 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=118.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh--------
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH-------- 85 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~-------- 85 (396)
+|+++|++|+|||||+++|++..... .+...|+|.+......+..+..+.+|||||+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~---------------v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 65 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI---------------VSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLD 65 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce---------------ecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHH
Confidence 48999999999999999998643211 1112377777777777778889999999996
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
+.+...+..++..+|++++|+|+.++......+.+..++..+.| +++|+||+|+.+.+.. ..+ +..+++
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~p-iilVvNK~D~~~~~~~-------~~~-~~~lg~-- 134 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKP-VILVANKIDGKKEDAV-------AAE-FYSLGF-- 134 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCC-EEEEEECccCCccccc-------HHH-HHhcCC--
Confidence 55666677788899999999999999999998888888888988 4556899998764221 111 223444
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
.+++++||.+| .++.+|++++...++..
T Consensus 135 --~~~~~vSa~~g----------~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 135 --GEPIPISAEHG----------RGIGDLLDAILELLPEE 162 (429)
T ss_pred --CCeEEEeCCcC----------CChHHHHHHHHHhcCcc
Confidence 36899999997 58999999998887653
No 104
>PRK00089 era GTPase Era; Reviewed
Probab=99.78 E-value=2.5e-17 Score=153.90 Aligned_cols=159 Identities=23% Similarity=0.238 Sum_probs=107.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh----
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD---- 87 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~---- 87 (396)
.-.|+++|.+|+|||||+++|++........ ..+.|.......+..++..+.|+||||..+
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~---------------~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~ 69 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP---------------KPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRA 69 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCC---------------CCCcccccEEEEEEcCCceEEEEECCCCCCchhH
Confidence 4579999999999999999998653221111 012222222222333557899999999533
Q ss_pred ----hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCC-HHHHHHHHHHHHHHHHhhcC
Q psy15217 88 ----YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD-DEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 88 ----~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~-~~~~~~~i~~~~~~~l~~~~ 162 (396)
+.......+..+|++++|+|++++......+.+..+...+.|.+ +++||+|+.+ .+...+ .+..+.+..+
T Consensus 70 l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvi-lVlNKiDl~~~~~~l~~----~~~~l~~~~~ 144 (292)
T PRK00089 70 LNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVI-LVLNKIDLVKDKEELLP----LLEELSELMD 144 (292)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEE-EEEECCcCCCCHHHHHH----HHHHHHhhCC
Confidence 23444556778999999999998776667777777776778855 4689999984 332222 2333333333
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
..+++++||+++ .++.+|++++...+|.
T Consensus 145 ----~~~i~~iSA~~~----------~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 145 ----FAEIVPISALKG----------DNVDELLDVIAKYLPE 172 (292)
T ss_pred ----CCeEEEecCCCC----------CCHHHHHHHHHHhCCC
Confidence 367999999997 5899999999888763
No 105
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.77 E-value=1.2e-17 Score=142.05 Aligned_cols=154 Identities=15% Similarity=0.138 Sum_probs=100.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 92 (396)
++|+++|+.++|||||+++|+....... .....+.++......+......+.+|||||+++|...+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 66 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQ--------------QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--------------cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhh
Confidence 5899999999999999999985421100 00011122211122233233467899999999999988
Q ss_pred HhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15217 93 ITGAAQMDGAILVCSAADGPM-PQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 169 (396)
...+..+|++++|+|+++... ....+++..+... ++| ++++.||+|+... . . .+...+.+.. ..|
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~-~-~----~~~~~~~~~~-----~~~ 134 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIP-CIVVANKIDLDPS-V-T----QKKFNFAEKH-----NLP 134 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEECccCchh-H-H----HHHHHHHHHc-----CCe
Confidence 888999999999999987432 2223344444443 677 5556899998532 1 1 1222333332 258
Q ss_pred EEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 170 ~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++||+++ .++.++++.+.+.+
T Consensus 135 ~~~~Sa~~~----------~gv~~l~~~l~~~~ 157 (161)
T cd04124 135 LYYVSAADG----------TNVVKLFQDAIKLA 157 (161)
T ss_pred EEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 999999997 58999999887643
No 106
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.77 E-value=3.1e-18 Score=129.15 Aligned_cols=85 Identities=26% Similarity=0.437 Sum_probs=79.7
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecC--CceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCC
Q psy15217 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK--DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVE 290 (396)
Q Consensus 213 ~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~--~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~ 290 (396)
|+|+|+++|++++.|+|++|+|++|.+++||+++++|.+ .+.+++|++|+.+++++++|.|||+++++|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 579999999999999999999999999999999999974 237899999999999999999999999999999999999
Q ss_pred CCeEEec
Q psy15217 291 RGQVLAK 297 (396)
Q Consensus 291 ~G~vl~~ 297 (396)
+|++||+
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999984
No 107
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.77 E-value=5.2e-18 Score=126.98 Aligned_cols=83 Identities=33% Similarity=0.555 Sum_probs=78.6
Q ss_pred ceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCC
Q psy15217 212 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291 (396)
Q Consensus 212 ~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~ 291 (396)
||+|+|+++|+++ .|++++|+|++|.+++||++.++|.+ ..++|++|++++.++++|.|||+|+++|++++..++++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~--~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~ 77 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSK--ESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISP 77 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCC--cEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCC
Confidence 6899999999999 99999999999999999999999864 67899999999999999999999999999998899999
Q ss_pred CeEEec
Q psy15217 292 GQVLAK 297 (396)
Q Consensus 292 G~vl~~ 297 (396)
|++|++
T Consensus 78 G~vl~~ 83 (83)
T cd03698 78 GDVLCS 83 (83)
T ss_pred CCEEeC
Confidence 999984
No 108
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.77 E-value=1.2e-17 Score=143.06 Aligned_cols=153 Identities=22% Similarity=0.248 Sum_probs=96.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCe-eEEEEecCChh------
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR-HYAHVDCPGHA------ 86 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~~~iiDtpG~~------ 86 (396)
+|+++|++|+|||||+++|.+...... . ..+.|.+.....+...+. .+.||||||+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~-----------~-----~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA-----------D-----YPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcccc-----------C-----CCccccCCcceEEEcCCCCeEEEEecCcccCccccc
Confidence 689999999999999999985321100 0 112333333333444555 89999999963
Q ss_pred -hhHHHHHhhhhcCCEEEEEEecCCCC--ChhHHHHHHHHHH-----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy15217 87 -DYIKNMITGAAQMDGAILVCSAADGP--MPQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (396)
Q Consensus 87 -~~~~~~~~~~~~~d~~llVvda~~g~--~~qt~e~l~~~~~-----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l 158 (396)
.+...+...+..+|++++|+|+++.. ..+.......+.. .+.|. ++++||+|+.+.....+ .+..+.
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~-ivv~NK~Dl~~~~~~~~----~~~~~~ 140 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPR-IVVLNKIDLLDEEELFE----LLKELL 140 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCcccccccc-EEEEEchhcCCchhhHH----HHHHHH
Confidence 23344455566799999999999752 2222222233332 25664 55789999977533222 233333
Q ss_pred hhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 159 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
... ...+++++||+++ .++.++++++.+.
T Consensus 141 ~~~----~~~~~~~~Sa~~~----------~gi~~l~~~i~~~ 169 (170)
T cd01898 141 KEL----WGKPVFPISALTG----------EGLDELLRKLAEL 169 (170)
T ss_pred hhC----CCCCEEEEecCCC----------CCHHHHHHHHHhh
Confidence 322 1367999999997 5899999988764
No 109
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.77 E-value=1.6e-17 Score=141.24 Aligned_cols=158 Identities=15% Similarity=0.196 Sum_probs=104.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 91 (396)
.++|+++|+.++|||||+++|++..... ......|.+.......+......+.+||+||+++|...
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~ 66 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSE--------------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSL 66 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHH
Confidence 3799999999999999999998643111 00111122222333344444456789999999999888
Q ss_pred HHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15217 92 MITGAAQMDGAILVCSAADGP-MPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 167 (396)
....++.+|++++|+|+++.. ..+....+..+... ++| +++++||+|+.+.... -..+...+....+
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~----- 137 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNII-IALVGNKADLESKRQV---STEEAQEYADENG----- 137 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccCcC---CHHHHHHHHHHcC-----
Confidence 888888999999999998632 23334444444443 355 5567899998743110 1112334444433
Q ss_pred CeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 168 ~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||+++ .++.++++++.+.+
T Consensus 138 ~~~~~~Sa~~~----------~~v~~l~~~l~~~l 162 (163)
T cd01860 138 LLFFETSAKTG----------ENVNELFTEIAKKL 162 (163)
T ss_pred CEEEEEECCCC----------CCHHHHHHHHHHHh
Confidence 57999999997 58999999988765
No 110
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.77 E-value=1.6e-17 Score=142.32 Aligned_cols=156 Identities=18% Similarity=0.166 Sum_probs=101.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
++.++|+++|+.++|||||+++|....... .....|.++ ..+......+.+|||||+++|.
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~---------------~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~ 67 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT---------------TIPTVGFNV----ETVTYKNVKFNVWDVGGQDKIR 67 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc---------------ccCCcccce----EEEEECCEEEEEEECCCCHHHH
Confidence 456899999999999999999997431100 000112221 2333456789999999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHH-H---HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLA-R---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~-~---~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
..+...+..+|++++|+|+++.. +....+.+... . ..++| ++++.||+|+.+... .+++.+.++.....
T Consensus 68 ~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-----~~~i~~~~~~~~~~ 141 (168)
T cd04149 68 PLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL-LLVFANKQDLPDAMK-----PHEIQEKLGLTRIR 141 (168)
T ss_pred HHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccCCC-----HHHHHHHcCCCccC
Confidence 88888889999999999998732 22233333222 2 13567 556789999864311 11334433322222
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
....+++++||++| .|+.+++++|.+
T Consensus 142 ~~~~~~~~~SAk~g----------~gv~~~~~~l~~ 167 (168)
T cd04149 142 DRNWYVQPSCATSG----------DGLYEGLTWLSS 167 (168)
T ss_pred CCcEEEEEeeCCCC----------CChHHHHHHHhc
Confidence 22357899999998 589999998854
No 111
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.76 E-value=1.2e-17 Score=141.86 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=99.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~ 93 (396)
+|+++|..++|||||+++|+....... ....|+......+......+.+|||||+++|...+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~-----------------~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 63 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ-----------------IIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWE 63 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc-----------------eecCccccceEEEEECCEEEEEEECCCCHhhHHHHH
Confidence 589999999999999999986421000 001111112223445677899999999999998888
Q ss_pred hhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH------cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 94 TGAAQMDGAILVCSAADGPM-PQTREHILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 94 ~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~------~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
..+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+... .+ ++...+........
T Consensus 64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~-~~----~~~~~l~~~~~~~~ 137 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDALT-AV----KITQLLGLENIKDK 137 (162)
T ss_pred HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCCC-HH----HHHHHhCCccccCc
Confidence 88899999999999987432 222233332221 3678 555689999976421 11 22222221111112
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
..+++++||++| .|+++++++|.+
T Consensus 138 ~~~~~~~Sa~~g----------~gv~~~~~~l~~ 161 (162)
T cd04157 138 PWHIFASNALTG----------EGLDEGVQWLQA 161 (162)
T ss_pred eEEEEEeeCCCC----------CchHHHHHHHhc
Confidence 356899999997 689999999854
No 112
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.76 E-value=3.2e-18 Score=129.29 Aligned_cols=87 Identities=72% Similarity=1.224 Sum_probs=81.0
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCC
Q psy15217 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERG 292 (396)
Q Consensus 213 ~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G 292 (396)
|+|+|+++|++++.|++++|+|++|.+++||++.+.|.+.+.+++|+||+++++++++|.|||+|+++|++++..++.+|
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 68999999999999999999999999999999999986445678999999999999999999999999999988999999
Q ss_pred eEEecCC
Q psy15217 293 QVLAKPG 299 (396)
Q Consensus 293 ~vl~~~~ 299 (396)
++|++++
T Consensus 81 ~vl~~~~ 87 (87)
T cd03697 81 MVLAKPG 87 (87)
T ss_pred cEEecCC
Confidence 9999763
No 113
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.76 E-value=1.2e-17 Score=127.96 Aligned_cols=92 Identities=47% Similarity=0.905 Sum_probs=84.4
Q ss_pred ceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEEEeC
Q psy15217 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 382 (396)
Q Consensus 303 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~ 382 (396)
+++.|+|++.||++..++++++|..||++.+|+++.++.|++....+++++++||.+.|+++|.+|+++++++||+||++
T Consensus 2 ~~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~g~~~~v~i~l~~p~~~~~g~rf~lR~~ 81 (93)
T cd03706 2 PHDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLPPGKEMVMPGEDTKVTLILRRPMVLEKGQRFTLRDG 81 (93)
T ss_pred cceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECCCCCcEeCCCCEEEEEEEECCcEEEeeCCEEEEEEC
Confidence 36789999999998655566899999999999999999999987777888999999999999999999999999999999
Q ss_pred CcEEEEEEEeee
Q psy15217 383 GRTVGAGVVVKI 394 (396)
Q Consensus 383 ~~t~~~G~i~~v 394 (396)
++|+|+|.|+++
T Consensus 82 ~~tvg~G~V~~~ 93 (93)
T cd03706 82 NRTIGTGLVTDT 93 (93)
T ss_pred CEEEEEEEEEeC
Confidence 999999999874
No 114
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.76 E-value=2.5e-17 Score=140.23 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=100.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADY 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~ 88 (396)
+.+||+++|..++|||||++++++..... .. . ..+.+........++ ..+.+|||||+++|
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~------------~~----~-~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 63 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVT------------DY----D-PTIEDSYTKQCEIDGQWAILDILDTAGQEEF 63 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCc------------cc----C-CCccceEEEEEEECCEEEEEEEEECCCCcch
Confidence 35899999999999999999998642100 00 0 011111111122233 46789999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
...+...+..+|++++|+|+++... ....+.+..+.. .++| +++++||+|+.+..... ..+...+++..+
T Consensus 64 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~~~~~---~~~~~~~~~~~~- 138 (164)
T cd04145 64 SAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP-MILVGNKADLEHQRKVS---REEGQELARKLK- 138 (164)
T ss_pred hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCC-EEEEeeCccccccceec---HHHHHHHHHHcC-
Confidence 8888888899999999999987321 112222222222 3677 55568999997542111 112344444433
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
++++++||+++ .|+.++++.+...
T Consensus 139 ----~~~~~~Sa~~~----------~~i~~l~~~l~~~ 162 (164)
T cd04145 139 ----IPYIETSAKDR----------LNVDKAFHDLVRV 162 (164)
T ss_pred ----CcEEEeeCCCC----------CCHHHHHHHHHHh
Confidence 57999999997 5899999998764
No 115
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=2.1e-17 Score=141.51 Aligned_cols=157 Identities=18% Similarity=0.113 Sum_probs=102.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~ 87 (396)
+...+|+++|+.|+|||||+++|+....... ....++.+.....+...+ ..+.+||+||++.
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 68 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPG----------------QGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCC----------------CCCceeeEEEEEEEEECCEEEEEEEEECCCcHH
Confidence 5579999999999999999999985421110 011222233333344444 4578899999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCChh-HHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~~q-t~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
|...+...+..+|++++|+|+.++..-+ ....+..++. .++|.+ ++.||+|+.+..+...... +.+.+..
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i-~v~NK~D~~~~~~i~~~~~---~~~~~~~-- 142 (169)
T cd04114 69 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITI-LVGNKIDLAERREVSQQRA---EEFSDAQ-- 142 (169)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECcccccccccCHHHH---HHHHHHc--
Confidence 9998888899999999999998643211 1222222232 356755 4679999875432222222 2222211
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
..+++++||+++ .++.++++.+...
T Consensus 143 ---~~~~~~~Sa~~~----------~gv~~l~~~i~~~ 167 (169)
T cd04114 143 ---DMYYLETSAKES----------DNVEKLFLDLACR 167 (169)
T ss_pred ---CCeEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 267999999997 5899999988753
No 116
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.76 E-value=1.6e-17 Score=140.81 Aligned_cols=152 Identities=21% Similarity=0.145 Sum_probs=98.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~ 93 (396)
||+++|+.++|||||+++|...... .. ..|+......++..+..+.+|||||+++|...+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~------------~~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV------------TT-------IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc------------Cc-------CCccCcCeEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 5899999999999999999643110 00 0121112223444667899999999999988888
Q ss_pred hhhhcCCEEEEEEecCCCC-ChhHHHHHHH-HHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15217 94 TGAAQMDGAILVCSAADGP-MPQTREHILL-ARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (396)
Q Consensus 94 ~~~~~~d~~llVvda~~g~-~~qt~e~l~~-~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 168 (396)
..+..+|++++|+|+++.. .....+.+.. +.. .+.| +++++||+|+.+... .+ ++...+..........
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~ 135 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAV-LLVFANKQDMPGALS-EA----EISEKLGLSELKDRTW 135 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCCC-HH----HHHHHhCccccCCCcE
Confidence 8889999999999998732 1222233322 221 3677 455689999975421 11 2222222111222346
Q ss_pred eEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 169 ~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
+++++||+++ .++.+++++|.+
T Consensus 136 ~~~~~Sa~~~----------~gi~~l~~~l~~ 157 (158)
T cd04151 136 SIFKTSAIKG----------EGLDEGMDWLVN 157 (158)
T ss_pred EEEEeeccCC----------CCHHHHHHHHhc
Confidence 8999999997 689999998753
No 117
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.76 E-value=2.2e-17 Score=140.14 Aligned_cols=153 Identities=18% Similarity=0.122 Sum_probs=99.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 92 (396)
+||+++|..++|||||+.+|....... + ..|+......++.....+.+||+||+++|...+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-------~------------~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 61 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-------T------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-------c------------CCCCCcceEEEEECCEEEEEEECCCCHhHHHHH
Confidence 489999999999999999996431100 0 011111112344566789999999999999888
Q ss_pred HhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15217 93 ITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 167 (396)
...+..+|++++|+|+++.. +.+..+.+..+.. .+.| ++++.||+|+.+... .+ ++...+....+....
T Consensus 62 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~~~~ 135 (159)
T cd04150 62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV-LLVFANKQDLPNAMS-AA----EVTDKLGLHSLRNRN 135 (159)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCCC-HH----HHHHHhCccccCCCC
Confidence 88889999999999998621 2333333333221 2456 666789999865311 11 222222211122234
Q ss_pred CeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 168 ~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
..++++||++| .|+++++++|.+
T Consensus 136 ~~~~~~Sak~g----------~gv~~~~~~l~~ 158 (159)
T cd04150 136 WYIQATCATSG----------DGLYEGLDWLSN 158 (159)
T ss_pred EEEEEeeCCCC----------CCHHHHHHHHhc
Confidence 57889999998 689999998854
No 118
>PRK04213 GTP-binding protein; Provisional
Probab=99.76 E-value=6.3e-17 Score=142.81 Aligned_cols=162 Identities=24% Similarity=0.315 Sum_probs=103.5
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC----
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG---- 84 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG---- 84 (396)
+...++|+++|..|+|||||+++|++... ..+...|+|.+.....+ . .+.+|||||
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~----------------~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~ 65 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKV----------------RVGKRPGVTRKPNHYDW--G--DFILTDLPGFGFM 65 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCceeeCceEEee--c--ceEEEeCCccccc
Confidence 34568999999999999999999975321 01112356655443322 2 589999999
Q ss_pred -------hhhhHHHHHh----hhhcCCEEEEEEecCCC-----------CChhHHHHHHHHHHcCCCeEEEEEeccCCCC
Q psy15217 85 -------HADYIKNMIT----GAAQMDGAILVCSAADG-----------PMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (396)
Q Consensus 85 -------~~~~~~~~~~----~~~~~d~~llVvda~~g-----------~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~ 142 (396)
.+.|...+.. ++..+|++++|+|+... ...++.+.+..+...++|.++ ++||+|+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~ii-v~NK~Dl~~ 144 (201)
T PRK04213 66 SGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIV-AVNKMDKIK 144 (201)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEE-EEECccccC
Confidence 4555544333 34457899999999652 223456667777778999554 679999976
Q ss_pred HHHHHHHHHHHHHHHHhhc-CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 143 DEELLELVEIEIRELLNKY-EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 143 ~~~~~~~i~~~~~~~l~~~-~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
.. +....++.+.+... .+.....+++++||++| |+++++++|.+.++..
T Consensus 145 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-----------gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 145 NR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-----------GIEELKEAIRKRLHEA 194 (201)
T ss_pred cH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-----------CHHHHHHHHHHhhcCc
Confidence 53 11112233222210 11111247999999984 7889999998876543
No 119
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.76 E-value=2.9e-17 Score=142.35 Aligned_cols=158 Identities=18% Similarity=0.126 Sum_probs=104.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
+..++|+++|..++|||||+.+|...... . ...|+......++.....+.+||+||+++|.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~------------~-------~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~ 75 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc------------c-------ccCCcceeEEEEEECCEEEEEEECCCCHHHH
Confidence 45689999999999999999999642110 0 0122222223355567889999999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
..+...+..+|++|+|+|+++.. ....++.+..... .++| ++|+.||+|+.+... . .++.+.+....+.
T Consensus 76 ~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~~~-~----~~~~~~l~l~~~~ 149 (181)
T PLN00223 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A----AEITDKLGLHSLR 149 (181)
T ss_pred HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCCCC-H----HHHHHHhCccccC
Confidence 98888899999999999998732 2222222222211 2566 556789999876421 1 1333333322222
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.....++++||++| +|+.+++++|...+
T Consensus 150 ~~~~~~~~~Sa~~g----------~gv~e~~~~l~~~~ 177 (181)
T PLN00223 150 QRHWYIQSTCATSG----------EGLYEGLDWLSNNI 177 (181)
T ss_pred CCceEEEeccCCCC----------CCHHHHHHHHHHHH
Confidence 23345778999998 68999999987754
No 120
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.75 E-value=3.8e-17 Score=140.22 Aligned_cols=153 Identities=18% Similarity=0.159 Sum_probs=100.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~ 90 (396)
++|+++|+.++|||||+++|+...... +.......+.....+..++ ..+.+||+||++.|..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 64 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSN----------------QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQS 64 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc----------------CcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHh
Confidence 489999999999999999998642110 0011112222222333333 3467999999999998
Q ss_pred HHHhhhhcCCEEEEEEecCCCCChhHHHHHH-----HHHHc------CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q psy15217 91 NMITGAAQMDGAILVCSAADGPMPQTREHIL-----LARQV------GVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~~qt~e~l~-----~~~~~------~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~ 159 (396)
.....++.+|++++|+|+++.. +.+++. +.... ++| +++++||+|+..+... ..+++..+++
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~~~~~~~ 137 (172)
T cd01862 65 LGVAFYRGADCCVLVYDVTNPK---SFESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLEEKRQV---STKKAQQWCQ 137 (172)
T ss_pred HHHHHhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCccCCCCce-EEEEEECccccccccc---CHHHHHHHHH
Confidence 8888889999999999998732 222221 12221 677 5556899999842111 1123444555
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
..+. ++++++|+.+| .|+.++++++.+.+
T Consensus 138 ~~~~----~~~~~~Sa~~~----------~gv~~l~~~i~~~~ 166 (172)
T cd01862 138 SNGN----IPYFETSAKEA----------INVEQAFETIARKA 166 (172)
T ss_pred HcCC----ceEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 4442 68999999997 58999999887643
No 121
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.75 E-value=4.6e-17 Score=139.22 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=96.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh-----
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD----- 87 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~----- 87 (396)
.+|+++|++|+|||||+++|++..... +...+.|.+.....+...+..+.||||||+.+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV----------------APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc----------------CCCCCcccceeEEEEccCceEEEEEECCCcCCccccC
Confidence 379999999999999999998642110 00123444444444555667899999999732
Q ss_pred --hH-HHHHhh-hhcCCEEEEEEecCCCCC---hhHHHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy15217 88 --YI-KNMITG-AAQMDGAILVCSAADGPM---PQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (396)
Q Consensus 88 --~~-~~~~~~-~~~~d~~llVvda~~g~~---~qt~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l 158 (396)
+. ...... ...+|++++|+|+++... ....+.+..+... ++| +++++||+|+.+..+..+ ...+.
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~~-----~~~~~ 138 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKP-VIVVLNKIDLLTFEDLSE-----IEEEE 138 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCC-eEEEEEccccCchhhHHH-----HHHhh
Confidence 11 111112 224689999999986422 2223334444443 677 556789999987533221 22222
Q ss_pred hhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 159 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+. ...+++++||+++ .|+.++++++.+.+
T Consensus 139 ~~-----~~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 167 (168)
T cd01897 139 EL-----EGEEVLKISTLTE----------EGVDEVKNKACELL 167 (168)
T ss_pred hh-----ccCceEEEEeccc----------CCHHHHHHHHHHHh
Confidence 21 2367999999998 68999999987643
No 122
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.75 E-value=4.9e-17 Score=143.50 Aligned_cols=156 Identities=17% Similarity=0.114 Sum_probs=101.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee---CCeeEEEEecCChhhhH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET---KARHYAHVDCPGHADYI 89 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~---~~~~~~iiDtpG~~~~~ 89 (396)
++|+++|..++|||||+++|+...... +....+..+.....+.. ....+.+|||||+++|.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~----------------~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~ 64 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQ----------------HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG 64 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh
Confidence 589999999999999999998642110 00111222222222333 34567899999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHH-------HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLAR-------QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~-------~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
..+...+..+|++++|+|.++... ....+++..+. ..++| ++++.||+|+.+.... ..+++.++.+..
T Consensus 65 ~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~---~~~~~~~~~~~~ 140 (201)
T cd04107 65 GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKKRLAK---DGEQMDQFCKEN 140 (201)
T ss_pred hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCccccccc---CHHHHHHHHHHc
Confidence 888888899999999999987221 11111222111 13567 4556899999742111 122455666665
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++ .+++++||+++ .++.++++++.+.+
T Consensus 141 ~~----~~~~e~Sak~~----------~~v~e~f~~l~~~l 167 (201)
T cd04107 141 GF----IGWFETSAKEG----------INIEEAMRFLVKNI 167 (201)
T ss_pred CC----ceEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 54 57999999997 58888888887654
No 123
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.75 E-value=3.3e-17 Score=139.88 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=101.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 92 (396)
++|+++|..++|||||+++|++...... . ....|.+..............+.+|||||+++|....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~------------~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA------------F--VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC------------C--CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 6899999999999999999985421100 0 0001222221112222223567899999999999888
Q ss_pred HhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15217 93 ITGAAQMDGAILVCSAADGP-MPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 168 (396)
...++.+|++++|+|.++.. +.+..+.+..+... +.| ++++.||+|+.+..... .++..++.+.++ .
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~ 138 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDERVVS---SERGRQLADQLG-----F 138 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCC-EEEEEECcccCcccccC---HHHHHHHHHHcC-----C
Confidence 88899999999999998621 22233333334332 345 66678999997542211 112333444443 4
Q ss_pred eEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 169 ~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+++++||+++ .|+.+|++++...+
T Consensus 139 ~~~~~Sa~~~----------~gv~~l~~~l~~~~ 162 (165)
T cd01865 139 EFFEASAKEN----------INVKQVFERLVDII 162 (165)
T ss_pred EEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 7999999997 58999999987654
No 124
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.75 E-value=1.8e-17 Score=139.43 Aligned_cols=151 Identities=25% Similarity=0.252 Sum_probs=98.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhhH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYI 89 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~ 89 (396)
.+||+++|+.|+|||||+++|+... .+.+...+++.+.....+..++ ..+.+||+||+.++.
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 64 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNK----------------FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYR 64 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC----------------CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccch
Confidence 3799999999999999999998642 1222334666666555555566 678899999999985
Q ss_pred HHHHhhhhcCCEEEEEEec-------CCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 90 KNMITGAAQMDGAILVCSA-------ADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda-------~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
.........++.++.++|. .++...+.......+.. +.| +++++||+|+..+. ........++..+
T Consensus 65 ~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~~~~-----~~~~~~~~~~~~~ 137 (161)
T TIGR00231 65 AIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLRDAK-----LKTHVAFLFAKLN 137 (161)
T ss_pred HHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCCcch-----hhHHHHHHHhhcc
Confidence 5544444455555555444 43332333333333332 777 55678999998753 2223444455444
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhh
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~ 199 (396)
. .+++++||..+ .++.+++++|.
T Consensus 138 ~----~~~~~~sa~~~----------~gv~~~~~~l~ 160 (161)
T TIGR00231 138 G----EPIIPLSAETG----------KNIDSAFKIVE 160 (161)
T ss_pred C----CceEEeecCCC----------CCHHHHHHHhh
Confidence 3 57999999997 58888888764
No 125
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=8.1e-17 Score=159.75 Aligned_cols=156 Identities=21% Similarity=0.236 Sum_probs=114.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChh----
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA---- 86 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~---- 86 (396)
...+|+++|.+|+|||||+++|++..... .+...|+|.+......+..+..+.+|||||++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~---------------v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 101 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAV---------------VEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAK 101 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCccc---------------ccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcch
Confidence 34689999999999999999998642111 11234788887777777788889999999975
Q ss_pred ----hhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 87 ----DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 87 ----~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
.+...+..++..+|++|+|+|++++......+.+..+...++| +++|+||+|+...+. +...+ ...+
T Consensus 102 ~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~p-iilV~NK~Dl~~~~~-------~~~~~-~~~g 172 (472)
T PRK03003 102 GLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKP-VILAANKVDDERGEA-------DAAAL-WSLG 172 (472)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCCccch-------hhHHH-HhcC
Confidence 2444556677899999999999998776666777777777888 555689999865311 11111 1234
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
+. . .+++||++| .|+.+|++++...++.
T Consensus 173 ~~---~-~~~iSA~~g----------~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 173 LG---E-PHPVSALHG----------RGVGDLLDAVLAALPE 200 (472)
T ss_pred CC---C-eEEEEcCCC----------CCcHHHHHHHHhhccc
Confidence 41 2 469999997 5899999999887754
No 126
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.75 E-value=3.2e-17 Score=139.21 Aligned_cols=153 Identities=15% Similarity=0.141 Sum_probs=102.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~ 90 (396)
+||+++|+.++|||||+++|++..... +.....+.+.....+..+ ...+.+||+||+++|..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 64 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE----------------DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHH
Confidence 589999999999999999998642111 011122222222223333 34678999999999998
Q ss_pred HHHhhhhcCCEEEEEEecCCCCChh-HHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~~q-t~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.....++.+|++++|+|+++...-+ ..+.+..... .++| ++++.||+|+...... ..++...+.+..+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~---- 136 (161)
T cd04113 65 VTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDLADQREV---TFLEASRFAQENG---- 136 (161)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcchhccC---CHHHHHHHHHHcC----
Confidence 8888889999999999998843322 2233333332 3667 5567899998753211 1123444455443
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
.+++++||+++ .++.++++++.+
T Consensus 137 -~~~~~~Sa~~~----------~~i~~~~~~~~~ 159 (161)
T cd04113 137 -LLFLETSALTG----------ENVEEAFLKCAR 159 (161)
T ss_pred -CEEEEEECCCC----------CCHHHHHHHHHH
Confidence 57999999997 689999998865
No 127
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.75 E-value=5.6e-17 Score=137.81 Aligned_cols=153 Identities=17% Similarity=0.206 Sum_probs=99.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeee--EEe--eCCeeEEEEecCChhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHI--EYE--TKARHYAHVDCPGHADY 88 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~--~~~--~~~~~~~iiDtpG~~~~ 88 (396)
++|+++|..++|||||+++|++..... +....+..+.... .+. .....+.+|||||+++|
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 64 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK----------------DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH
Confidence 489999999999999999998642110 0111222232222 222 22456889999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCChhH-HHHHHHHH--HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPMPQT-REHILLAR--QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~~qt-~e~l~~~~--~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
...+...++.+|++++|+|+.+...-+. ...+..+. ..++| +++++||+|+.+..... .++...+.+.++
T Consensus 65 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~v~---~~~~~~~~~~~~--- 137 (162)
T cd04106 65 DAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQAVIT---NEEAEALAKRLQ--- 137 (162)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhcccccCCC---HHHHHHHHHHcC---
Confidence 9888888999999999999987321111 12222222 13788 45567999987532211 123444455444
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
.|++++||+++ .++++++++|..
T Consensus 138 --~~~~~~Sa~~~----------~~v~~l~~~l~~ 160 (162)
T cd04106 138 --LPLFRTSVKDD----------FNVTELFEYLAE 160 (162)
T ss_pred --CeEEEEECCCC----------CCHHHHHHHHHH
Confidence 47999999997 589999998865
No 128
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.75 E-value=5e-17 Score=137.03 Aligned_cols=145 Identities=25% Similarity=0.258 Sum_probs=100.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH--
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK-- 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~-- 90 (396)
++|+++|++|+|||||+++|++....... ...+.|.+.....+...+..+.+|||||+.++..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS---------------DIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEecc---------------CCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchH
Confidence 58999999999999999999864211100 0225666655556666778899999999765532
Q ss_pred ------HHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHH-HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 91 ------NMITGAAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 91 ------~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
.+...+..+|++++|+|+++....... .... ..+.| +++++||+|+.+.... . .
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~---~~~~~~~~~~-vi~v~nK~D~~~~~~~-----------~----~ 127 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDL---EILELPADKP-IIVVLNKSDLLPDSEL-----------L----S 127 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHH---HHHHhhcCCC-EEEEEEchhcCCcccc-----------c----c
Confidence 244556789999999999974433332 2333 34666 5567899999875321 0 1
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.....+++++||.++ .++.+|+++|.+.
T Consensus 128 ~~~~~~~~~~Sa~~~----------~~v~~l~~~l~~~ 155 (157)
T cd04164 128 LLAGKPIIAISAKTG----------EGLDELKEALLEL 155 (157)
T ss_pred ccCCCceEEEECCCC----------CCHHHHHHHHHHh
Confidence 112468999999997 5899999998764
No 129
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.74 E-value=1.1e-16 Score=137.27 Aligned_cols=155 Identities=16% Similarity=0.090 Sum_probs=100.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADY 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~ 88 (396)
..++|+++|..++|||||+++|+...... +....++.+.....+..+ ...+.|||+||+++|
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 67 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDT----------------QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF 67 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCc----------------CcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH
Confidence 46899999999999999999997532110 011122222222223333 345679999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHH-------HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLAR-------QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~-------~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
...+...+..+|++++|+|.++... ....+....+. ..++| ++++.||+|+..... ...++.++++.
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~----~~~~~~~~~~~ 142 (170)
T cd04116 68 RSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPERQV----STEEAQAWCRE 142 (170)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCc-EEEEEECcccccccc----CHHHHHHHHHH
Confidence 8888888899999999999886321 11111111111 12467 555689999864211 12245555665
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
++. .+++++||+++ .++.++++.+.+
T Consensus 143 ~~~----~~~~e~Sa~~~----------~~v~~~~~~~~~ 168 (170)
T cd04116 143 NGD----YPYFETSAKDA----------TNVAAAFEEAVR 168 (170)
T ss_pred CCC----CeEEEEECCCC----------CCHHHHHHHHHh
Confidence 543 57999999997 589999988765
No 130
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.74 E-value=5.9e-17 Score=139.77 Aligned_cols=158 Identities=20% Similarity=0.139 Sum_probs=103.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
+..++|+++|..++|||||+.+|...... + ...|+......++.....+.+|||||+++|.
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~------------~-------~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~ 71 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV------------T-------TIPTIGFNVETVTYKNISFTVWDVGGQDKIR 71 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC------------C-------cCCccccceEEEEECCEEEEEEECCCChhhH
Confidence 44699999999999999999999632110 0 0112222222344466788999999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
..+...+..+|++++|+|+++.. .....+++..+.. .++| ++++.||+|+.+... .+ ++.+.+......
T Consensus 72 ~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~ 145 (175)
T smart00177 72 PLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV-ILVFANKQDLPDAMK-AA----EITEKLGLHSIR 145 (175)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccCCC-HH----HHHHHhCccccC
Confidence 88888889999999999998632 3334444444322 2466 555789999875311 11 222222211122
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
...+.++++||++| .|+.+++++|.+.+
T Consensus 146 ~~~~~~~~~Sa~~g----------~gv~e~~~~l~~~~ 173 (175)
T smart00177 146 DRNWYIQPTCATSG----------DGLYEGLTWLSNNL 173 (175)
T ss_pred CCcEEEEEeeCCCC----------CCHHHHHHHHHHHh
Confidence 23456789999998 68999999987653
No 131
>KOG0092|consensus
Probab=99.74 E-value=3e-17 Score=136.63 Aligned_cols=165 Identities=18% Similarity=0.230 Sum_probs=117.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
...+||+++|..++|||||+-++....-.. . .|..-|...-+...........+.||||+|+++|.
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e-------------~-~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHE-------------N-IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYH 68 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCcccc-------------c-cccccccEEEEEEEEeCCcEEEEEEEEcCCccccc
Confidence 457999999999999999999886532111 0 12222222222222222233567799999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCC-CCChhHHHHHHHHHHcCCCeEEE--EEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVV--FLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~-g~~~qt~e~l~~~~~~~ip~iIv--viNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.....++++|++||+|.|.++ ..+.+.+.++..+....-|.+++ |-||+|+....+ .-.++...+.+..+
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~---V~~~ea~~yAe~~g---- 141 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERRE---VEFEEAQAYAESQG---- 141 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhccc---ccHHHHHHHHHhcC----
Confidence 988889999999999999998 44566677777777765576665 569999987311 11235666666655
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN 206 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~ 206 (396)
.+++.+||++| .++.+++..|.+.+|...
T Consensus 142 -ll~~ETSAKTg----------~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 142 -LLFFETSAKTG----------ENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred -CEEEEEecccc----------cCHHHHHHHHHHhccCcc
Confidence 47999999998 589999999999887543
No 132
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.74 E-value=3e-17 Score=138.97 Aligned_cols=152 Identities=20% Similarity=0.156 Sum_probs=101.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~ 93 (396)
||+++|+.|+|||||+++|++..... ...|.......++.....+.+||+||++.|.....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT-------------------TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC-------------------CCCCcCcceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 58999999999999999998653111 01111222223444567899999999999988888
Q ss_pred hhhhcCCEEEEEEecCCC-CChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15217 94 TGAAQMDGAILVCSAADG-PMPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (396)
Q Consensus 94 ~~~~~~d~~llVvda~~g-~~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 168 (396)
..+..+|++++|+|++.. -..+..+++..... .+.| +++++||+|+..... .+ ++...+.........+
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~~~ 135 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVP-LLIFANKQDLPGALS-VS----ELIEKLGLEKILGRRW 135 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEeeccCCccccC-HH----HHHHhhChhhccCCcE
Confidence 888899999999999974 22333334333222 3677 555689999976421 11 2223332221222457
Q ss_pred eEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 169 ~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
+++++||++| .|+++++++|..
T Consensus 136 ~~~~~Sa~~~----------~gv~~~~~~l~~ 157 (158)
T cd00878 136 HIQPCSAVTG----------DGLDEGLDWLLQ 157 (158)
T ss_pred EEEEeeCCCC----------CCHHHHHHHHhh
Confidence 8999999997 589999998764
No 133
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.74 E-value=6.8e-17 Score=136.11 Aligned_cols=152 Identities=18% Similarity=0.217 Sum_probs=101.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee--CCeeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET--KARHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~--~~~~~~iiDtpG~~~~~~ 90 (396)
+||+++|.+++|||||+++|++...... ..+..+.+.....++. ....+.+||+||+..|..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 64 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN----------------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRS 64 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc----------------cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHH
Confidence 4899999999999999999985432111 1112222222223333 346778999999999999
Q ss_pred HHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGP-MPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.....+..+|++++|+|+.+.. .......+..+... +.| +++++||+|+..+... ..+++.++....
T Consensus 65 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~----- 135 (159)
T cd00154 65 ITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIP-IILVGNKIDLEDQRQV---STEEAQQFAKEN----- 135 (159)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccccccccc---cHHHHHHHHHHc-----
Confidence 8888899999999999998732 12223344444443 367 5567899999732211 122344454442
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhh
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~ 199 (396)
..+++.+|+.++ .++.++++++.
T Consensus 136 ~~~~~~~sa~~~----------~~i~~~~~~i~ 158 (159)
T cd00154 136 GLLFFETSAKTG----------ENVEELFQSLA 158 (159)
T ss_pred CCeEEEEecCCC----------CCHHHHHHHHh
Confidence 367999999997 58999998874
No 134
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.74 E-value=3e-17 Score=122.49 Aligned_cols=82 Identities=29% Similarity=0.481 Sum_probs=76.6
Q ss_pred ceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCC
Q psy15217 212 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291 (396)
Q Consensus 212 ~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~ 291 (396)
||+|+|+++|+.. |++++|+|++|.+++||++.++|.+ ..++|++|+.++.++++|.|||+|+++|++++..++++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~--~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~ 76 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNK--TQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISP 76 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCC--cEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCC
Confidence 6899999999864 8999999999999999999999864 67899999999999999999999999999999999999
Q ss_pred CeEEec
Q psy15217 292 GQVLAK 297 (396)
Q Consensus 292 G~vl~~ 297 (396)
||+|++
T Consensus 77 G~vl~~ 82 (82)
T cd04089 77 GFVLCS 82 (82)
T ss_pred CCEEeC
Confidence 999984
No 135
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.74 E-value=6e-17 Score=139.59 Aligned_cols=155 Identities=20% Similarity=0.147 Sum_probs=101.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
+..+|+++|+.++|||||+++|+...... ...|+......+..+...+.+||+||++.|..
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 74 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-------------------TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRS 74 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-------------------cCCccccceEEEEECCeEEEEEECCCCHHHHH
Confidence 46899999999999999999997532100 01222222334555678899999999999988
Q ss_pred HHHhhhhcCCEEEEEEecCCCCC-hhHHHHHH-HHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPM-PQTREHIL-LARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~-~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
.+...+..+|++++|+|+++... ....+.+. ++.. .++| +++++||+|+..... .+ ++.+.+.......
T Consensus 75 ~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~~~-~~----~i~~~l~~~~~~~ 148 (174)
T cd04153 75 SWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGAMT-PA----EISESLGLTSIRD 148 (174)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCCCC-HH----HHHHHhCcccccC
Confidence 88888899999999999987421 12222222 2222 2467 555689999865311 11 1222221111112
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
..++++++||++| .|+++++++|.+
T Consensus 149 ~~~~~~~~SA~~g----------~gi~e~~~~l~~ 173 (174)
T cd04153 149 HTWHIQGCCALTG----------EGLPEGLDWIAS 173 (174)
T ss_pred CceEEEecccCCC----------CCHHHHHHHHhc
Confidence 3468999999997 589999998854
No 136
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.74 E-value=9.1e-17 Score=141.26 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=102.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~ 90 (396)
+.|+++|..|+|||||+.++....- ..+....++.+.....+..++ ..+.||||+|+++|..
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f----------------~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~ 64 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTF----------------CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS 64 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCC----------------CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH
Confidence 3689999999999999999975321 111112233333333444444 5678999999999999
Q ss_pred HHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.+...++.+|++++|+|.++.. +....+++..+.. .++| ++++.||+|+.+..+.. ..+..++.+...
T Consensus 65 l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v~---~~~~~~~a~~~~---- 136 (202)
T cd04120 65 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREIS---RQQGEKFAQQIT---- 136 (202)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccccC---HHHHHHHHHhcC----
Confidence 8888999999999999999732 2222333333332 2566 55677999996532211 122334444331
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
..+++.+||++| .++.++++++...+
T Consensus 137 ~~~~~etSAktg----------~gV~e~F~~l~~~~ 162 (202)
T cd04120 137 GMRFCEASAKDN----------FNVDEIFLKLVDDI 162 (202)
T ss_pred CCEEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 257999999998 58888888876543
No 137
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.74 E-value=2.4e-17 Score=139.36 Aligned_cols=147 Identities=21% Similarity=0.259 Sum_probs=99.9
Q ss_pred EEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHH-----
Q psy15217 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN----- 91 (396)
Q Consensus 17 i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~----- 91 (396)
++|+.|+|||||+++|++..... ....++|++.....++.++..+.+|||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKV----------------GNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccc----------------cCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHH
Confidence 58999999999999997642110 012366776666667777788999999998776431
Q ss_pred -HHhhh--hcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15217 92 -MITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (396)
Q Consensus 92 -~~~~~--~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 168 (396)
+...+ ..+|++++|+|+.... +....+..+...++|.+ +++||+|+.+...... +...+.+.++ .
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~~i-iv~NK~Dl~~~~~~~~----~~~~~~~~~~-----~ 132 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNLE--RNLYLTLQLLELGLPVV-VALNMIDEAEKRGIKI----DLDKLSELLG-----V 132 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcch--hHHHHHHHHHHcCCCEE-EEEehhhhcccccchh----hHHHHHHhhC-----C
Confidence 22233 4899999999998732 23333445566788855 5679999976532211 2223333333 5
Q ss_pred eEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 169 ~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
+++++||.++ .++.++++++...
T Consensus 133 ~~~~iSa~~~----------~~~~~l~~~l~~~ 155 (158)
T cd01879 133 PVVPTSARKG----------EGIDELKDAIAEL 155 (158)
T ss_pred CeEEEEccCC----------CCHHHHHHHHHHH
Confidence 7999999997 5899999988764
No 138
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.74 E-value=6.8e-17 Score=138.40 Aligned_cols=159 Identities=18% Similarity=0.136 Sum_probs=102.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
..++|+++|++|+|||||+++|+........ ....|.+.......+......+.+||+||+++|..
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 68 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------DLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRS 68 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 3589999999999999999999754211100 01113333333333333335688999999999988
Q ss_pred HHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.....+..+|++++|+|+++... .....++..+.. .++| ++++.||+|+.+.... ..++...+.+..+
T Consensus 69 ~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~---~~~~~~~~~~~~~---- 140 (168)
T cd01866 69 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRREV---SYEEGEAFAKEHG---- 140 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC---CHHHHHHHHHHcC----
Confidence 88888899999999999986221 122223333333 2566 5556799999743211 1123344444433
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||..+ .++.++++.+...+
T Consensus 141 -~~~~e~Sa~~~----------~~i~~~~~~~~~~~ 165 (168)
T cd01866 141 -LIFMETSAKTA----------SNVEEAFINTAKEI 165 (168)
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999997 58999998876643
No 139
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.74 E-value=1.1e-16 Score=135.74 Aligned_cols=154 Identities=17% Similarity=0.141 Sum_probs=103.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~ 90 (396)
.||+++|+.++|||||+++|++..... +...+.+.+.....+..++ ..+.+|||||+++|..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~ 64 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN----------------QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRS 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc----------------cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 389999999999999999998642111 1122444444444444444 4578999999999988
Q ss_pred HHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHH-Hc--CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLAR-QV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~-~~--~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.....+..+|++++|+|+++... .+...++.... .. ++| +++++||+|+...... ..++...+.+..
T Consensus 65 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~~~---~~~~~~~~~~~~----- 135 (161)
T cd01861 65 LIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKRQV---STEEGEKKAKEL----- 135 (161)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEEChhccccCcc---CHHHHHHHHHHh-----
Confidence 88888899999999999987432 22233333332 23 366 5667899999543211 111233333333
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.++++++||.++ .++.++++++.+.
T Consensus 136 ~~~~~~~Sa~~~----------~~v~~l~~~i~~~ 160 (161)
T cd01861 136 NAMFIETSAKAG----------HNVKELFRKIASA 160 (161)
T ss_pred CCEEEEEeCCCC----------CCHHHHHHHHHHh
Confidence 267999999997 6899999998764
No 140
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.74 E-value=7e-17 Score=137.92 Aligned_cols=156 Identities=18% Similarity=0.171 Sum_probs=101.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhhhH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYI 89 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~ 89 (396)
.++|+++|..|+|||||+++|....... +...+.+.+.....+..+ ...+.+||+||+++|.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE----------------SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 65 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHH
Confidence 4799999999999999999997532110 111122222222223333 3467899999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
......+..+|++++|+|+++.. +.+..+.+..+.. .+.| ++++.||+|+....... .++...+.+..
T Consensus 66 ~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~---- 137 (166)
T cd01869 66 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTDKRVVD---YSEAQEFADEL---- 137 (166)
T ss_pred HHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEEChhcccccCCC---HHHHHHHHHHc----
Confidence 88888888999999999998721 1222333333333 2467 55567999986542110 12334444433
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+|++++||+++ .++.++++.+.+.+
T Consensus 138 -~~~~~~~Sa~~~----------~~v~~~~~~i~~~~ 163 (166)
T cd01869 138 -GIPFLETSAKNA----------TNVEQAFMTMAREI 163 (166)
T ss_pred -CCeEEEEECCCC----------cCHHHHHHHHHHHH
Confidence 358999999997 58999999887643
No 141
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=2.9e-16 Score=137.86 Aligned_cols=159 Identities=21% Similarity=0.235 Sum_probs=107.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhh-hhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh---
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVL-SKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH--- 85 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~-~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~--- 85 (396)
...++|+++|++|+|||||+++|++.. ... .....|.|........ +..+.||||||+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~---------------~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLAR---------------TSKTPGRTQLINFFEV---NDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCccc---------------ccCCCCceeEEEEEec---CCeEEEeCCCCCCCc
Confidence 456899999999999999999998642 111 0112245555443332 367999999994
Q ss_pred -------hhhHHHHHhhhh---cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHH
Q psy15217 86 -------ADYIKNMITGAA---QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIR 155 (396)
Q Consensus 86 -------~~~~~~~~~~~~---~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~ 155 (396)
++|.......+. .++++++|+|+..+......+.+..+...++|.+ +++||+|+.+..+. +....++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~i-iv~nK~Dl~~~~~~-~~~~~~i~ 161 (196)
T PRK00454 84 KVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVL-IVLTKADKLKKGER-KKQLKKVR 161 (196)
T ss_pred CCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEE-EEEECcccCCHHHH-HHHHHHHH
Confidence 344333333333 4578889999988766666666666777888844 56799999875433 33333455
Q ss_pred HHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 156 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
..+... ..+++++||+++ .++.++++.|..++.
T Consensus 162 ~~l~~~-----~~~~~~~Sa~~~----------~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 162 KALKFG-----DDEVILFSSLKK----------QGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHhc-----CCceEEEEcCCC----------CCHHHHHHHHHHHhc
Confidence 555433 357999999997 589999999887654
No 142
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.74 E-value=7.8e-17 Score=167.18 Aligned_cols=162 Identities=17% Similarity=0.177 Sum_probs=114.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChh----
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA---- 86 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~---- 86 (396)
..++|+++|++|+|||||+++|++..... .....|+|.+.....+..++..+.||||||+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~---------------v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~ 513 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAV---------------VNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQH 513 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccc---------------cCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcc
Confidence 45899999999999999999998642111 01123677776666677788889999999953
Q ss_pred -----hhHHH--HHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q psy15217 87 -----DYIKN--MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (396)
Q Consensus 87 -----~~~~~--~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~ 159 (396)
+|... ....+..+|++++|+|++++...|....+..+...+.|. |+|+||+|+.+.+. .+.+..++...+.
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~pi-IiV~NK~DL~~~~~-~~~~~~~~~~~l~ 591 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRAL-VLVFNKWDLMDEFR-RQRLERLWKTEFD 591 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEEchhcCChhH-HHHHHHHHHHhcc
Confidence 22222 234467899999999999999898888888777788884 55689999987532 2333333443333
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
... ..|++++||++| .|+.+|++.+.+..+
T Consensus 592 ~~~----~~~ii~iSAktg----------~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 592 RVT----WARRVNLSAKTG----------WHTNRLAPAMQEALE 621 (712)
T ss_pred CCC----CCCEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 222 368999999998 467777777665443
No 143
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.73 E-value=1e-16 Score=137.17 Aligned_cols=159 Identities=20% Similarity=0.151 Sum_probs=100.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
..+||+++|..++|||||++++.+....... ....|.+.......+......+.+|||||+++|..
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~--------------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~ 67 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSF--------------ISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRT 67 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCccc--------------ccCccceEEEEEEEECCEEEEEEEEeCCchHHHHH
Confidence 3589999999999999999999864211100 00012222222222222234678999999999988
Q ss_pred HHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.....+..+|++++|+|+++... .+..+.+..+.. .++| ++++.||+|+.+.... ..++...+.+..
T Consensus 68 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~----- 138 (167)
T cd01867 68 ITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKRVV---SKEEGEALADEY----- 138 (167)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC---CHHHHHHHHHHc-----
Confidence 88788889999999999986321 122222322322 2567 4556799999753211 111233444433
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
..|++++||.++ .++.++++++.+.+
T Consensus 139 ~~~~~~~Sa~~~----------~~v~~~~~~i~~~~ 164 (167)
T cd01867 139 GIKFLETSAKAN----------INVEEAFFTLAKDI 164 (167)
T ss_pred CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 257999999997 58999998887643
No 144
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.73 E-value=9e-17 Score=137.30 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=100.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 91 (396)
.+||+++|+.++|||||+++|....... ..+ ...|.........+......+.+|||||+++|...
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~------------~~~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 67 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMA------------DCP--HTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAV 67 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC------------CCC--cccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 3799999999999999999997542100 000 00112221222223223346789999999999998
Q ss_pred HHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15217 92 MITGAAQMDGAILVCSAADGP-MPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 167 (396)
+...++.+|++++|+|.++.. +....+.+...... +.| ++++.||+|+...... ..++...+.+..+
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~~---~~~~~~~~~~~~~----- 138 (166)
T cd04122 68 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRDV---TYEEAKQFADENG----- 138 (166)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCc---CHHHHHHHHHHcC-----
Confidence 888899999999999998732 12222333333222 445 5567899999754221 1123444444433
Q ss_pred CeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 168 ~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.+++++||++| .|+.++++.+...
T Consensus 139 ~~~~e~Sa~~~----------~~i~e~f~~l~~~ 162 (166)
T cd04122 139 LLFLECSAKTG----------ENVEDAFLETAKK 162 (166)
T ss_pred CEEEEEECCCC----------CCHHHHHHHHHHH
Confidence 58999999997 5888988877653
No 145
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.73 E-value=6.4e-17 Score=137.79 Aligned_cols=156 Identities=20% Similarity=0.159 Sum_probs=98.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCce-EEeeeeEEeeCCeeEEEEecCChhhhHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGIT-INTAHIEYETKARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t-~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 91 (396)
++|+++|+.|+|||||+++|++...... .. ...+ .......+......+.+|||||+++|...
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~------------~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 64 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDD------------YD----PTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAM 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcc------------cC----CchhhhEEEEEEECCEEEEEEEEECCCcccchHH
Confidence 4899999999999999999986421110 00 0000 00111122222346779999999999888
Q ss_pred HHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 92 MITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
....+..+|++++|+|+++... .........+.. .++| ++++.||+|+.+..... ..+...+.+..+
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 136 (164)
T smart00173 65 RDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVVS---TEEGKELARQWG---- 136 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceEc---HHHHHHHHHHcC----
Confidence 8888899999999999987321 111221122211 2567 55578999987531111 112334444332
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+++++||+++ .++.++++++...+.
T Consensus 137 -~~~~~~Sa~~~----------~~i~~l~~~l~~~~~ 162 (164)
T smart00173 137 -CPFLETSAKER----------VNVDEAFYDLVREIR 162 (164)
T ss_pred -CEEEEeecCCC----------CCHHHHHHHHHHHHh
Confidence 68999999997 689999999876543
No 146
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.73 E-value=7.5e-17 Score=137.09 Aligned_cols=152 Identities=19% Similarity=0.178 Sum_probs=97.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceE-EeeeeEEeeCC--eeEEEEecCChhhhH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITI-NTAHIEYETKA--RHYAHVDCPGHADYI 89 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~-~~~~~~~~~~~--~~~~iiDtpG~~~~~ 89 (396)
++|+++|..|+|||||+++|...... ... ..|+ +.....+..++ ..+.||||||+++|.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~------------~~~------~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV------------EKY------DPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT 63 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC------------ccc------CCchhhhEEEEEEECCEEEEEEEEECCCccccc
Confidence 68999999999999999999853210 000 0111 11111222233 456789999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
..+...+..+|++++|+|.++.. +....+.+..+.. .++| ++++.||+|+.+..... ..+...+.+.++
T Consensus 64 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 137 (163)
T cd04136 64 AMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERVVS---REEGQALARQWG-- 137 (163)
T ss_pred hHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceec---HHHHHHHHHHcC--
Confidence 88888888999999999998622 1222222223322 2577 55568999987532211 112233333332
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.|++++||+++ .++.++++++.+.
T Consensus 138 ---~~~~~~Sa~~~----------~~v~~l~~~l~~~ 161 (163)
T cd04136 138 ---CPFYETSAKSK----------INVDEVFADLVRQ 161 (163)
T ss_pred ---CeEEEecCCCC----------CCHHHHHHHHHHh
Confidence 68999999997 5899999998764
No 147
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.73 E-value=5.2e-17 Score=141.98 Aligned_cols=157 Identities=20% Similarity=0.194 Sum_probs=103.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
+...+|+++|+.|+|||||+++|.+..... ...|.......+..++..+.+||+||+..+.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-------------------~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-------------------HVPTLHPTSEELTIGNIKFKTFDLGGHEQAR 77 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-------------------cCCccCcceEEEEECCEEEEEEECCCCHHHH
Confidence 457899999999999999999997532110 0112222223344567788999999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHH----HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC-
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF- 163 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~----~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~- 163 (396)
..+...+..+|++++|+|+.+.. .....+.+..+. ..+.| +++++||+|+..... . .++++.++....
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~~~-~----~~~~~~~~~~~~~ 151 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP-FLILGNKIDLPGAVS-E----EELRQALGLYGTT 151 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCCcC-H----HHHHHHhCccccc
Confidence 87788888999999999998631 222333333332 23577 455689999874311 1 133444432111
Q ss_pred ----------CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 164 ----------PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 164 ----------~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.....+++++||+++ .|+.+++++|.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~Sa~~~----------~gv~e~~~~l~~~ 189 (190)
T cd00879 152 TGKGVSLKVSGIRPIEVFMCSVVKR----------QGYGEAFRWLSQY 189 (190)
T ss_pred ccccccccccCceeEEEEEeEecCC----------CChHHHHHHHHhh
Confidence 112357999999998 6899999998764
No 148
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.73 E-value=1.2e-16 Score=135.53 Aligned_cols=154 Identities=17% Similarity=0.133 Sum_probs=97.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 92 (396)
++|+++|..|+|||||+++|++..... .... ..+.+. .....+......+.+|||||+++|...+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~------------~~~~--t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD------------EYDP--TIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC------------CcCC--cchheE-EEEEEECCEEEEEEEEECCCCcchHHHH
Confidence 689999999999999999998642110 0000 000000 1111222223456789999999999888
Q ss_pred HhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15217 93 ITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 167 (396)
...+..+|++++|+|..+... ......+..+.. .++| ++++.||+|+.+.... ..+...+.+..+
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~----~~~~~~~~~~~~----- 136 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDLAARTVS----SRQGQDLAKSYG----- 136 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccceec----HHHHHHHHHHhC-----
Confidence 888899999999999986221 111122222222 3667 5557899999763211 123344444433
Q ss_pred CeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 168 ~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.+++++||+++ .|+.++++++.+.
T Consensus 137 ~~~~~~Sa~~~----------~gi~~l~~~l~~~ 160 (162)
T cd04138 137 IPYIETSAKTR----------QGVEEAFYTLVRE 160 (162)
T ss_pred CeEEEecCCCC----------CCHHHHHHHHHHH
Confidence 57999999997 5899999998753
No 149
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=8.1e-17 Score=140.93 Aligned_cols=157 Identities=16% Similarity=0.157 Sum_probs=101.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeee--eEEeeCCeeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAH--IEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~--~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
++|+++|..|+|||||+++|........ +....+..+... ..+......+.||||||+++|..
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 65 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG---------------NFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS 65 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc---------------CcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 4899999999999999999975421100 001111122222 22222234678999999999988
Q ss_pred HHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.....+..+|++++|+|++.... ......+..+... ++| +++++||+|+....... ..+...+.+.++
T Consensus 66 ~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~~~---~~~~~~l~~~~~---- 137 (191)
T cd04112 66 VTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERVVK---REDGERLAKEYG---- 137 (191)
T ss_pred hhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccchhccccC---HHHHHHHHHHcC----
Confidence 88888889999999999987321 2223333333333 566 55678999996431111 123344444433
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.|++++||++| .++.++++++.+.+.
T Consensus 138 -~~~~e~Sa~~~----------~~v~~l~~~l~~~~~ 163 (191)
T cd04112 138 -VPFMETSAKTG----------LNVELAFTAVAKELK 163 (191)
T ss_pred -CeEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 58999999997 589999999987654
No 150
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=1.5e-16 Score=157.09 Aligned_cols=153 Identities=21% Similarity=0.228 Sum_probs=111.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh-----
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD----- 87 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~----- 87 (396)
.+|+++|++|+|||||+++|++...... ....|+|.+.........+..+.+|||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v---------------~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~ 66 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV---------------ADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGF 66 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee---------------CCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhH
Confidence 4799999999999999999986432110 11236777766666777788999999999887
Q ss_pred ---hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 88 ---YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 88 ---~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
+......++..+|++++|+|+.++......+....++..+.| +++++||+|+.+.++ ...++ ..+++
T Consensus 67 ~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~D~~~~~~-------~~~~~-~~lg~- 136 (435)
T PRK00093 67 EKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKP-VILVVNKVDGPDEEA-------DAYEF-YSLGL- 136 (435)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCc-EEEEEECccCccchh-------hHHHH-HhcCC-
Confidence 333345567789999999999998887777777888888988 555689999765211 12222 23343
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
..++++||.+| .++.++++.+....+
T Consensus 137 ---~~~~~iSa~~g----------~gv~~l~~~I~~~~~ 162 (435)
T PRK00093 137 ---GEPYPISAEHG----------RGIGDLLDAILEELP 162 (435)
T ss_pred ---CCCEEEEeeCC----------CCHHHHHHHHHhhCC
Confidence 24789999997 589999999877443
No 151
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.73 E-value=1.2e-16 Score=136.29 Aligned_cols=154 Identities=18% Similarity=0.186 Sum_probs=98.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEee--eeEEeeCCeeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA--HIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
++|+++|++++|||||+++|++..... +....+..+.. ...+......+.+|||||+++|..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS----------------KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLE 64 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHH
Confidence 589999999999999999998642110 11112222222 222333345678999999999998
Q ss_pred HHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH--------cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ--------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~--------~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
.+...+..+|++++|+|.++... ....+.+..+.. .+.| ++++.||+|+.+.... ...+...+....
T Consensus 65 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~ 140 (168)
T cd04119 65 VRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDLTKHRAV---SEDEGRLWAESK 140 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCce-EEEEEEchhccccccc---CHHHHHHHHHHc
Confidence 88888889999999999987321 111222222222 2355 6667899999742110 011233333333
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
+ .+++++||+++ .++.++++++.+.
T Consensus 141 ~-----~~~~~~Sa~~~----------~gi~~l~~~l~~~ 165 (168)
T cd04119 141 G-----FKYFETSACTG----------EGVNEMFQTLFSS 165 (168)
T ss_pred C-----CeEEEEECCCC----------CCHHHHHHHHHHH
Confidence 2 57999999997 6899999998764
No 152
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=3.9e-16 Score=132.49 Aligned_cols=163 Identities=23% Similarity=0.296 Sum_probs=113.3
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhh-hhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh-
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLS-KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH- 85 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~-~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~- 85 (396)
++....-|+++|.+++|||||+|+|++... .+.+ ...|.|....++.+... +.|+|.||.
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtS---------------ktPGrTq~iNff~~~~~---~~lVDlPGYG 81 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTS---------------KTPGRTQLINFFEVDDE---LRLVDLPGYG 81 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecC---------------CCCCccceeEEEEecCc---EEEEeCCCcc
Confidence 344567999999999999999999997531 2211 23388888776655432 889999992
Q ss_pred ---------hhhHHHHHhhh---hcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHH
Q psy15217 86 ---------ADYIKNMITGA---AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIE 153 (396)
Q Consensus 86 ---------~~~~~~~~~~~---~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~ 153 (396)
+.+-.....++ ....++++++|+.+++...+++.+..+...++|.++ ++||+|.++..+..+.+. .
T Consensus 82 yAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~v-v~tK~DKi~~~~~~k~l~-~ 159 (200)
T COG0218 82 YAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIV-VLTKADKLKKSERNKQLN-K 159 (200)
T ss_pred cccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEE-EEEccccCChhHHHHHHH-H
Confidence 33333333333 357889999999999999999999999999999665 579999998755433332 3
Q ss_pred HHHHHhhcCCCC-CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 154 IRELLNKYEFPG-NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 154 ~~~~l~~~~~~~-~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+.+.+ ...+ +..-++..|+..+ .|+++|.+.|.+.+.
T Consensus 160 v~~~l---~~~~~~~~~~~~~ss~~k----------~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 160 VAEEL---KKPPPDDQWVVLFSSLKK----------KGIDELKAKILEWLK 197 (200)
T ss_pred HHHHh---cCCCCccceEEEEecccc----------cCHHHHHHHHHHHhh
Confidence 33322 2221 1211667777765 478899988877653
No 153
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.73 E-value=4.1e-16 Score=132.46 Aligned_cols=157 Identities=22% Similarity=0.199 Sum_probs=102.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh---
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY--- 88 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--- 88 (396)
..+|+++|.+|+|||||+++|++........ ....+.......+......+.+|||||....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 67 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP---------------KPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK 67 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccC---------------CCCceeceEEEEEEcCCeEEEEEECCCCCcchHH
Confidence 5789999999999999999998642111100 0112222222233445577899999996432
Q ss_pred -----HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 89 -----IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 89 -----~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
.......+..+|++++|+|+.+.........+..+...+.|.++ ++||+|+....+..... ...+.....
T Consensus 68 ~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ii-v~nK~Dl~~~~~~~~~~---~~~~~~~~~- 142 (168)
T cd04163 68 LGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVIL-VLNKIDLVKDKEDLLPL---LEKLKELGP- 142 (168)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEE-EEEchhccccHHHHHHH---HHHHHhccC-
Confidence 23344557789999999999987555556666666666788554 67999998432222222 222222222
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
..+++++|++++ .+++++++.|.+.
T Consensus 143 ---~~~~~~~s~~~~----------~~~~~l~~~l~~~ 167 (168)
T cd04163 143 ---FAEIFPISALKG----------ENVDELLEEIVKY 167 (168)
T ss_pred ---CCceEEEEeccC----------CChHHHHHHHHhh
Confidence 367999999987 5899999988764
No 154
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.73 E-value=7.6e-17 Score=138.27 Aligned_cols=155 Identities=17% Similarity=0.120 Sum_probs=102.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~ 93 (396)
+|+++|..++|||||+++|.+.... ....|+......++.....+.+|||||+.+|...+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-------------------~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-------------------QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-------------------CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHH
Confidence 5899999999999999999764110 011222222234555678899999999999988888
Q ss_pred hhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC-CCCC
Q psy15217 94 TGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF-PGND 167 (396)
Q Consensus 94 ~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~-~~~~ 167 (396)
..+..+|++++|+|+++.. .....+.+..+.. .+.| ++++.||+|+.+... .+ ++..+++...+ ....
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~ 135 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL-LLIFANKQDVAGALS-VE----EMTELLSLHKLCCGRS 135 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccCCC-HH----HHHHHhCCccccCCCc
Confidence 8889999999999998731 2223333333321 1356 666789999865311 11 23333332221 1123
Q ss_pred CeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 168 ~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+++++||++| .|+.+++++|.+.++
T Consensus 136 ~~~~~~Sa~~g----------~gv~~~f~~l~~~~~ 161 (169)
T cd04158 136 WYIQGCDARSG----------MGLYEGLDWLSRQLV 161 (169)
T ss_pred EEEEeCcCCCC----------CCHHHHHHHHHHHHh
Confidence 57889999998 589999999987554
No 155
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.73 E-value=7.6e-17 Score=136.51 Aligned_cols=141 Identities=26% Similarity=0.349 Sum_probs=96.2
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh----hhhH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH----ADYI 89 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~----~~~~ 89 (396)
+|+++|++++|||||+++|.+... .. ..|... .+... .+|||||. .++.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~------------~~--------~~~~~v---~~~~~----~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT------------LA--------RKTQAV---EFNDK----GDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc------------cC--------ccceEE---EECCC----CcccCCccccCCHHHH
Confidence 799999999999999999875310 00 111111 12111 26999995 5677
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 169 (396)
..+..++..+|++++|+|++++........+.. ..+.| +++++||+|+.+.+ . ..+.++++..++ ..|
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~--~----~~~~~~~~~~~~---~~p 123 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKR-QIAVISKTDMPDAD--V----AATRKLLLETGF---EEP 123 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCC-eEEEEEccccCccc--H----HHHHHHHHHcCC---CCC
Confidence 777778889999999999997653333222221 23566 56678999986532 1 134455555554 268
Q ss_pred EEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 170 ~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
++++||+++ .++++|++++.+.++
T Consensus 124 ~~~~Sa~~g----------~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 124 IFELNSHDP----------QSVQQLVDYLASLTK 147 (158)
T ss_pred EEEEECCCc----------cCHHHHHHHHHHhch
Confidence 999999997 699999999988664
No 156
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.73 E-value=9.1e-17 Score=136.67 Aligned_cols=155 Identities=18% Similarity=0.182 Sum_probs=102.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~ 90 (396)
+||+++|++++|||||+++|++.... ......++.+.....+...+ ..+.+||+||+++|..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 64 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS----------------EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRS 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 58999999999999999999854211 01111233333333334443 4678999999999998
Q ss_pred HHHhhhhcCCEEEEEEecCCCCChhHH-HHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPMPQTR-EHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~~qt~-e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.....+..+|++++|+|+++...-+.. ..+..+.. .++| +++++||+|+....... .+....+.+..+
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~~~---~~~~~~~~~~~~---- 136 (164)
T smart00175 65 ITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQVS---REEAEAFAEEHG---- 136 (164)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcccccCCC---HHHHHHHHHHcC----
Confidence 888888999999999999873222221 12222222 2567 55578999987532111 112333444443
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++|+.++ .++.++++++.+.+
T Consensus 137 -~~~~e~Sa~~~----------~~i~~l~~~i~~~~ 161 (164)
T smart00175 137 -LPFFETSAKTN----------TNVEEAFEELAREI 161 (164)
T ss_pred -CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 56999999987 58999999988755
No 157
>KOG0094|consensus
Probab=99.73 E-value=5.7e-16 Score=129.04 Aligned_cols=163 Identities=17% Similarity=0.129 Sum_probs=119.8
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceE--EeeeeEEeeCC--eeEEEEecC
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITI--NTAHIEYETKA--RHYAHVDCP 83 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~--~~~~~~~~~~~--~~~~iiDtp 83 (396)
......|++++|..++|||||+.+++....++.. +.|| +.-...+...+ ..+.+|||+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~Y------------------qATIGiDFlskt~~l~d~~vrLQlWDTA 79 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTY------------------QATIGIDFLSKTMYLEDRTVRLQLWDTA 79 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccc------------------cceeeeEEEEEEEEEcCcEEEEEEEecc
Confidence 3345689999999999999999999876544322 3333 33223334444 466799999
Q ss_pred ChhhhHHHHHhhhhcCCEEEEEEecCC-CCChhHHHHHHHHHHcC-C--CeEEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q psy15217 84 GHADYIKNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVG-V--PYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (396)
Q Consensus 84 G~~~~~~~~~~~~~~~d~~llVvda~~-g~~~qt~e~l~~~~~~~-i--p~iIvviNK~D~~~~~~~~~~i~~~~~~~l~ 159 (396)
|+++|.....++++.+.++|+|.|.++ ..+.+|..++.-+...+ - ..+++|-||.||.+..+.. .++-....+
T Consensus 80 GQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs---~eEg~~kAk 156 (221)
T KOG0094|consen 80 GQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVS---IEEGERKAK 156 (221)
T ss_pred cHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhh---HHHHHHHHH
Confidence 999999999999999999999999987 66788888887766552 2 3345556999999873322 123334455
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCC
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN 206 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~ 206 (396)
+++ .-|+.+||+.| .++..|+..+...+|.+.
T Consensus 157 el~-----a~f~etsak~g----------~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 157 ELN-----AEFIETSAKAG----------ENVKQLFRRIAAALPGME 188 (221)
T ss_pred HhC-----cEEEEecccCC----------CCHHHHHHHHHHhccCcc
Confidence 554 46999999998 589999999988887654
No 158
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.73 E-value=9.2e-17 Score=138.10 Aligned_cols=159 Identities=20% Similarity=0.214 Sum_probs=102.7
Q ss_pred cCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChh
Q psy15217 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (396)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~ 86 (396)
.+....++|+++|+.|+|||||+++|.+...... ....|.+ ...+...+..+.+||+||+.
T Consensus 9 ~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~---------------~~t~g~~----~~~i~~~~~~~~~~D~~G~~ 69 (173)
T cd04155 9 RKSSEEPRILILGLDNAGKTTILKQLASEDISHI---------------TPTQGFN----IKTVQSDGFKLNVWDIGGQR 69 (173)
T ss_pred hccCCccEEEEEccCCCCHHHHHHHHhcCCCccc---------------CCCCCcc----eEEEEECCEEEEEEECCCCH
Confidence 3445579999999999999999999986421100 0011222 22334457789999999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHH----HHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLA----RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~----~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
++...+...+..+|++++|+|+.+.. .......+... ...++| +++++||+|+.+.... + ++.+.+...
T Consensus 70 ~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~-~----~i~~~l~~~ 143 (173)
T cd04155 70 AIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATAAPA-E----EIAEALNLH 143 (173)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccCCCH-H----HHHHHcCCc
Confidence 98887777788999999999998621 12222222222 234678 5556799998764211 1 122222222
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
.+.....+++++||++| .|+++++++|.+
T Consensus 144 ~~~~~~~~~~~~Sa~~~----------~gi~~~~~~l~~ 172 (173)
T cd04155 144 DLRDRTWHIQACSAKTG----------EGLQEGMNWVCK 172 (173)
T ss_pred ccCCCeEEEEEeECCCC----------CCHHHHHHHHhc
Confidence 22223356889999997 689999999864
No 159
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.72 E-value=1.5e-16 Score=138.43 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=101.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
+..++|+++|..|+|||||+++|.+...... ..|.......+...+..+.++|+||+.++.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 75 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-------------------QPTQHPTSEELAIGNIKFTTFDLGGHQQAR 75 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-------------------CCccccceEEEEECCEEEEEEECCCCHHHH
Confidence 4569999999999999999999975421100 011111122334456789999999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHH----HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC-
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF- 163 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~----~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~- 163 (396)
..+...+..+|++++|+|+++.. .....+.+..+. ..++| +++++||+|+..... .+ ++.+.+.....
T Consensus 76 ~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~~-~~----~i~~~l~l~~~~ 149 (184)
T smart00178 76 RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP-FLILGNKIDAPYAAS-ED----ELRYALGLTNTT 149 (184)
T ss_pred HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCCC-HH----HHHHHcCCCccc
Confidence 88888889999999999998632 233333333322 24677 555689999864211 11 22222211110
Q ss_pred ------CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 164 ------PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 164 ------~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
......++++||+++ .|+.+++++|.+
T Consensus 150 ~~~~~~~~~~~~i~~~Sa~~~----------~g~~~~~~wl~~ 182 (184)
T smart00178 150 GSKGKVGVRPLEVFMCSVVRR----------MGYGEGFKWLSQ 182 (184)
T ss_pred ccccccCCceeEEEEeecccC----------CChHHHHHHHHh
Confidence 012456999999997 589999999865
No 160
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.72 E-value=1.6e-16 Score=137.92 Aligned_cols=158 Identities=20% Similarity=0.159 Sum_probs=102.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
+..++|+++|..++|||||+.++..... .. . ..|+......++..+..+.+|||||+++|.
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~------------~~-~------~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~ 75 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEV------------VT-T------IPTIGFNVETVEYKNLKFTMWDVGGQDKLR 75 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc------------cc-c------CCccccceEEEEECCEEEEEEECCCCHhHH
Confidence 4568999999999999999999963211 00 0 012112222344567789999999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHH-HH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLA-RQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~-~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
..+...+..+|++|+|+|+++.. .....+.+... .. ..+| ++++.||.|+.+.... + ++...+....+.
T Consensus 76 ~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~i~~~l~~~~~~ 149 (182)
T PTZ00133 76 PLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV-LLVFANKQDLPNAMST-T----EVTEKLGLHSVR 149 (182)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCCCCH-H----HHHHHhCCCccc
Confidence 88888899999999999998621 22233333322 21 2456 6667899998653111 1 222222211222
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
...++++++||++| .|+.+++++|.+.+
T Consensus 150 ~~~~~~~~~Sa~tg----------~gv~e~~~~l~~~i 177 (182)
T PTZ00133 150 QRNWYIQGCCATTA----------QGLYEGLDWLSANI 177 (182)
T ss_pred CCcEEEEeeeCCCC----------CCHHHHHHHHHHHH
Confidence 23456789999998 68999999987644
No 161
>PLN03110 Rab GTPase; Provisional
Probab=99.72 E-value=1.4e-16 Score=142.08 Aligned_cols=159 Identities=16% Similarity=0.115 Sum_probs=103.2
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHA 86 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~ 86 (396)
.+..++|+++|+.++|||||+.+|++.... .+....+..+.....+..++ ..+.||||||++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~----------------~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFC----------------LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH
Confidence 346789999999999999999999754210 01111222333333333333 467899999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
+|.......+..+|++++|+|.++.. +.....++..+.. .++| ++++.||+|+.......+ ++...+....
T Consensus 73 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~~~---~~~~~l~~~~- 147 (216)
T PLN03110 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDLNHLRSVAE---EDGQALAEKE- 147 (216)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEEChhcccccCCCH---HHHHHHHHHc-
Confidence 99888888889999999999998632 1222233333333 2577 555679999864321111 1222333322
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
..+++++||+++ .++.++++.+...+
T Consensus 148 ----~~~~~e~SA~~g----------~~v~~lf~~l~~~i 173 (216)
T PLN03110 148 ----GLSFLETSALEA----------TNVEKAFQTILLEI 173 (216)
T ss_pred ----CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 368999999997 58888888886655
No 162
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.72 E-value=1.6e-16 Score=138.11 Aligned_cols=160 Identities=17% Similarity=0.236 Sum_probs=99.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEE-eeCCeeEEEEecCChhhhHH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY-ETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~-~~~~~~~~iiDtpG~~~~~~ 90 (396)
.++|+++|+.|+|||||++++...... ... ...|.+........ ......+.+|||||+++|..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~------------~~~---~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 67 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV------------NTV---PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP 67 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC------------CcC---CccccceeEEEeeccCCCceEEEEEECCCcHhHHH
Confidence 589999999999999999999753110 000 01122221111111 22346789999999999988
Q ss_pred HHHhhhhcCCEEEEEEecCCCCC-hhHHH----HHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC-
Q psy15217 91 NMITGAAQMDGAILVCSAADGPM-PQTRE----HILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP- 164 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~-~qt~e----~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~- 164 (396)
.+...+..+|++++|+|+++... ..... ........++| +++++||+|+.+... . .++..++......
T Consensus 68 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~~~-~----~~~~~~~~~~~~~~ 141 (183)
T cd04152 68 LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNALS-V----SEVEKLLALHELSA 141 (183)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCccccCC-H----HHHHHHhCccccCC
Confidence 77777889999999999987321 11111 22222334678 455679999864211 1 1222222211111
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
....+++++||+++ .|+.+++++|.+.+
T Consensus 142 ~~~~~~~~~SA~~~----------~gi~~l~~~l~~~l 169 (183)
T cd04152 142 STPWHVQPACAIIG----------EGLQEGLEKLYEMI 169 (183)
T ss_pred CCceEEEEeecccC----------CCHHHHHHHHHHHH
Confidence 12357899999998 68999999887655
No 163
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.72 E-value=2e-16 Score=136.95 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=101.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeee--eEEe----------eCCeeEE
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAH--IEYE----------TKARHYA 78 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~--~~~~----------~~~~~~~ 78 (396)
..++|+++|..++|||||+++|....... +....+..+... ..+. .....+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNP----------------KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQ 66 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCc----------------cCCCccceEEEEEEEEEcCccccccccCCCEEEEE
Confidence 45899999999999999999997542110 001112222211 2221 1235678
Q ss_pred EEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHH----HHHHHHc----CCCeEEEEEeccCCCCHHHHHHHH
Q psy15217 79 HVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREH----ILLARQV----GVPYIVVFLNKADMVDDEELLELV 150 (396)
Q Consensus 79 iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~----l~~~~~~----~ip~iIvviNK~D~~~~~~~~~~i 150 (396)
||||||+++|...+...+..+|++++|+|+++ .++.++ +..+... +.| +++|.||+|+.+.....
T Consensus 67 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~v~--- 139 (180)
T cd04127 67 LWDTAGQERFRSLTTAFFRDAMGFLLIFDLTN---EQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQRQVS--- 139 (180)
T ss_pred EEeCCChHHHHHHHHHHhCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcCccC---
Confidence 99999999999888888999999999999986 333333 2233222 455 56678999997532111
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 151 EIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.++...+.+..+ +|++++||+++ .++.++++.|.+.
T Consensus 140 ~~~~~~~~~~~~-----~~~~e~Sak~~----------~~v~~l~~~l~~~ 175 (180)
T cd04127 140 EEQAKALADKYG-----IPYFETSAATG----------TNVEKAVERLLDL 175 (180)
T ss_pred HHHHHHHHHHcC-----CeEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 123445555443 57999999997 5899999988653
No 164
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.72 E-value=1.1e-16 Score=135.78 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=99.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 92 (396)
++|+++|..++|||||+++|+...... ..+...+.+.......+......+.+|||||+++|....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP--------------DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc--------------ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 589999999999999999998542111 011122333322223333333568899999999998887
Q ss_pred HhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15217 93 ITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 167 (396)
...+..+|++++|+|+++... .....++..+.. .+.| +++++||+|+....... ++...+.+.. .
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~~~----~~~~~~~~~~-----~ 136 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKIDKENREVTR----EEGLKFARKH-----N 136 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCc-EEEEEECCcccccccCH----HHHHHHHHHc-----C
Confidence 778889999999999986322 111222222322 3566 45567999997432111 1233444433 3
Q ss_pred CeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 168 ~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
++++++||++| .++.++++.+.+
T Consensus 137 ~~~~~~Sa~~~----------~gi~~~~~~~~~ 159 (161)
T cd01863 137 MLFIETSAKTR----------DGVQQAFEELVE 159 (161)
T ss_pred CEEEEEecCCC----------CCHHHHHHHHHH
Confidence 67999999997 589999988765
No 165
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.72 E-value=2.4e-16 Score=134.75 Aligned_cols=159 Identities=20% Similarity=0.215 Sum_probs=99.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 92 (396)
+||+++|+.|+|||||+++|....... ..+. .....++. ..+......+.+|||||++.|...+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~------------~~~~-~~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~ 64 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPE------------NVPR-VLPEITIP---ADVTPERVPTTIVDTSSRPQDRANL 64 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc------------cCCC-cccceEee---eeecCCeEEEEEEeCCCchhhhHHH
Confidence 489999999999999999998642110 0000 00011111 1222344678899999999888777
Q ss_pred HhhhhcCCEEEEEEecCCCCChhH-H-HHHHHHHH--cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15217 93 ITGAAQMDGAILVCSAADGPMPQT-R-EHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~~~qt-~-e~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 168 (396)
...+..+|++++|+|+++...-+. . .++..+.. .++| +++++||+|+.+..... ....++..+.+.+.- ..
T Consensus 65 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~---~~ 139 (166)
T cd01893 65 AAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGSSQA-GLEEEMLPIMNEFRE---IE 139 (166)
T ss_pred hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhcccccchh-HHHHHHHHHHHHHhc---cc
Confidence 777889999999999987332222 1 12233332 2567 55567999997643211 122233333333321 13
Q ss_pred eEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 169 ~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+++++||+++ .++.++++.+...+
T Consensus 140 ~~~e~Sa~~~----------~~v~~lf~~~~~~~ 163 (166)
T cd01893 140 TCVECSAKTL----------INVSEVFYYAQKAV 163 (166)
T ss_pred EEEEeccccc----------cCHHHHHHHHHHHh
Confidence 7999999997 58999999887643
No 166
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.72 E-value=7.9e-17 Score=127.14 Aligned_cols=87 Identities=24% Similarity=0.376 Sum_probs=77.5
Q ss_pred eeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEc-------------cCCcccccCCCEEEEEEEecceee
Q psy15217 304 HKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIEL-------------PKNKEMVMPGDNVLITVRLINPIA 370 (396)
Q Consensus 304 ~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~-------------~~~~~~l~~g~~~~v~~~~~~p~~ 370 (396)
+++|+|+|.||+++ +.+|.+||+|++|+++.+++|++.. ..+|++|++||.+.|+|++.+|+|
T Consensus 3 ~~~F~A~i~vl~~~----~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~ 78 (108)
T cd03704 3 VTEFEAQIAILELK----RSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPIC 78 (108)
T ss_pred ccEEEEEEEEEeCC----CCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEE
Confidence 57899999999986 2479999999999999999999851 125679999999999999999999
Q ss_pred cccC------CeEEEEeCCcEEEEEEEeee
Q psy15217 371 MEEG------LRFAIREGGRTVGAGVVVKI 394 (396)
Q Consensus 371 ~~~~------~r~~lr~~~~t~~~G~i~~v 394 (396)
+|.+ +||+||++|+|+|+|.|+++
T Consensus 79 ~e~~~~~~~lGRf~lR~~g~Tva~G~V~~~ 108 (108)
T cd03704 79 LEKFEDFPQLGRFTLRDEGKTIAIGKVLKL 108 (108)
T ss_pred EEEcccCCCcccEEEEeCCCEEEEEEEEEC
Confidence 9988 89999999999999999874
No 167
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.72 E-value=1.9e-16 Score=135.95 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=101.2
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhhhHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~ 91 (396)
+|+++|..++|||||++++....-. .+....+..+.....+..+ ...+.||||||+++|...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD----------------KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI 65 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh
Confidence 7999999999999999999864211 0111112222222233333 356789999999999988
Q ss_pred HHhhhhcCCEEEEEEecCCC-CChhHHHHHHHHHHcCC---CeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15217 92 MITGAAQMDGAILVCSAADG-PMPQTREHILLARQVGV---PYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g-~~~qt~e~l~~~~~~~i---p~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 167 (396)
+...++.+|++++|+|+++. .+....+++..+..... +.+++|.||+|+.+... .+....+...+.+.++
T Consensus 66 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~-~~~~~~~~~~~~~~~~----- 139 (170)
T cd04108 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ-YALMEQDAIKLAAEMQ----- 139 (170)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc-ccccHHHHHHHHHHcC-----
Confidence 88889999999999999762 12223333433322221 33666789999865422 1112223444444443
Q ss_pred CeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 168 ~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||++| .+++++++.+.+..
T Consensus 140 ~~~~e~Sa~~g----------~~v~~lf~~l~~~~ 164 (170)
T cd04108 140 AEYWSVSALSG----------ENVREFFFRVAALT 164 (170)
T ss_pred CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 57999999997 58999999887654
No 168
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.72 E-value=1.7e-16 Score=135.54 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=97.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 92 (396)
++|+++|..|+|||||+++++....... + ... -+.+. .....+......+.+|||||+++|....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~------~--~~t------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES------Y--IPT------IEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQ 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC------c--CCc------chheE-EEEEEECCEEEEEEEEECCCCCcchHHH
Confidence 6899999999999999999985421100 0 000 00010 1111222234567899999999998877
Q ss_pred HhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH------cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 93 ITGAAQMDGAILVCSAADGPM-PQTREHILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~------~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
......+|++++|+|.++... ......+..+.. .++| ++++.||+|+....+.. ..+...+....
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~---- 138 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKREVS---SNEGAACATEW---- 138 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccccCeec---HHHHHHHHHHh----
Confidence 777889999999999987332 222333333333 3577 45567999997532211 11222233322
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
.++++++||++| .++.+++++|.+
T Consensus 139 -~~~~~e~SA~~g----------~~v~~~f~~l~~ 162 (165)
T cd04140 139 -NCAFMETSAKTN----------HNVQELFQELLN 162 (165)
T ss_pred -CCcEEEeecCCC----------CCHHHHHHHHHh
Confidence 357999999997 589999999875
No 169
>PTZ00369 Ras-like protein; Provisional
Probab=99.72 E-value=9.9e-17 Score=140.13 Aligned_cols=159 Identities=17% Similarity=0.124 Sum_probs=100.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
+.++|+++|+.|+|||||+.++.+...... ... ..+.+. .....++.....+.||||||+++|..
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~---------~~~-----t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 68 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDE---------YDP-----TIEDSY-RKQCVIDEETCLLDILDTAGQEEYSA 68 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcC---------cCC-----chhhEE-EEEEEECCEEEEEEEEeCCCCccchh
Confidence 468999999999999999999986421100 000 001111 11122333334577999999999999
Q ss_pred HHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
.+...+..+|++++|+|+++... ....+++..+.. -++| ++++.||+|+.+..... ..+...+.+.++
T Consensus 69 l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~i~---~~~~~~~~~~~~--- 141 (189)
T PTZ00369 69 MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVP-MILVGNKCDLDSERQVS---TGEGQELAKSFG--- 141 (189)
T ss_pred hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccC---HHHHHHHHHHhC---
Confidence 88888899999999999987321 222222222222 2567 55568999986431111 112233333332
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.|++++||+++ .|+.++++++.+.+.
T Consensus 142 --~~~~e~Sak~~----------~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 142 --IPFLETSAKQR----------VNVDEAFYELVREIR 167 (189)
T ss_pred --CEEEEeeCCCC----------CCHHHHHHHHHHHHH
Confidence 57999999997 589998888876553
No 170
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.72 E-value=2.6e-16 Score=134.22 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=101.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhhH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYI 89 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~ 89 (396)
.++|+++|.+++|||||+++|++..... +....++.+.....+..++ ..+.+||+||+++|.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 66 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL----------------DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR 66 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 4799999999999999999998542110 0111222333333333333 467899999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
......+..+|++++|+|+++... ....+.+..+... ++| ++++.||+|+.+.... ..++...+....
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~~~---~~~~~~~~~~~~---- 138 (165)
T cd01868 67 AITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAV---PTEEAKAFAEKN---- 138 (165)
T ss_pred HHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccccC---CHHHHHHHHHHc----
Confidence 888888889999999999986221 1122222333222 466 6667899998753211 111333444432
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.++++++||++| .++.++++.+...
T Consensus 139 -~~~~~~~Sa~~~----------~~v~~l~~~l~~~ 163 (165)
T cd01868 139 -GLSFIETSALDG----------TNVEEAFKQLLTE 163 (165)
T ss_pred -CCEEEEEECCCC----------CCHHHHHHHHHHH
Confidence 367999999997 5899999998764
No 171
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.72 E-value=1.2e-15 Score=136.55 Aligned_cols=184 Identities=18% Similarity=0.218 Sum_probs=122.3
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
..+...|+++|++|+|||||++.|++..... ......|. +. .....+..++++||||+.
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~--------------~~~~~~g~-i~----i~~~~~~~i~~vDtPg~~-- 94 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ--------------NISDIKGP-IT----VVTGKKRRLTFIECPNDI-- 94 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC--------------cccccccc-EE----EEecCCceEEEEeCCchH--
Confidence 3567889999999999999999998642111 00011221 11 122357789999999964
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh-hcCCCCCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN-KYEFPGND 167 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~-~~~~~~~~ 167 (396)
..+...+..+|.+++|+|+..+...++.+.+..+...++|.+++++||+|+.+.....+.+..+++..+. ++ ++ .
T Consensus 95 -~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~-~~--~ 170 (225)
T cd01882 95 -NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEV-YQ--G 170 (225)
T ss_pred -HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhh-CC--C
Confidence 5666677889999999999999999999888888888999777678999998544444555556665332 22 22 3
Q ss_pred CeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEe
Q psy15217 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFS 222 (396)
Q Consensus 168 ~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~ 222 (396)
.+++++||++.. .-+| .....++..+...-+...+..+....|.++.+..
T Consensus 171 ~ki~~iSa~~~~--~~~~---~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~ 220 (225)
T cd01882 171 AKLFYLSGIVHG--RYPK---TEIHNLARFISVMKFRPLNWRNSHPYVLADRMED 220 (225)
T ss_pred CcEEEEeeccCC--CCCH---HHHHHHHHHHHhCCCCCCeeecCCCeEEEeeeec
Confidence 689999998752 1122 2345667777664444433334444455555543
No 172
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.72 E-value=1.1e-16 Score=136.53 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=98.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~ 90 (396)
++|+++|..|+|||||+++++..... .... ..+.+.....+..+ ...+.+|||||+++|..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~------------~~~~-----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV------------EKYD-----PTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA 64 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC------------cccC-----CcchheEEEEEEECCEEEEEEEEECCCcccchh
Confidence 68999999999999999999743110 0000 11111111223333 34567999999999999
Q ss_pred HHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHH----HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGP-MPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~----~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
.+...+..+|++++|+|.++.. +....+.+..+. ..++| ++++.||+|+.+..... ..+...+.+.++
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 137 (164)
T cd04175 65 MRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVG---KEQGQNLARQWG--- 137 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcchhccEEc---HHHHHHHHHHhC---
Confidence 8888899999999999987632 122222222222 13577 55678999997531110 112233334333
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.|++++||+++ .++.++++++.+.+
T Consensus 138 --~~~~~~Sa~~~----------~~v~~~~~~l~~~l 162 (164)
T cd04175 138 --CAFLETSAKAK----------INVNEIFYDLVRQI 162 (164)
T ss_pred --CEEEEeeCCCC----------CCHHHHHHHHHHHh
Confidence 57999999997 58999999987644
No 173
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.72 E-value=3.1e-16 Score=136.54 Aligned_cols=157 Identities=13% Similarity=0.120 Sum_probs=104.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADY 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~ 88 (396)
..++|+++|..++|||||+.++..... ..+....++.+.....+..++ ..+.||||||+++|
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~----------------~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~ 68 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST----------------ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF 68 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC----------------CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 469999999999999999999975311 111111223333222233333 56789999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH--cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
...+...+..+|++|||+|.++.. +.....++..+.. -++| +|++.||+|+...... ..++.+.+.+..+
T Consensus 69 ~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~~~v---~~~~~~~~a~~~~--- 141 (189)
T cd04121 69 CTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVP-KILVGNRLHLAFKRQV---ATEQAQAYAERNG--- 141 (189)
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccchhccCC---CHHHHHHHHHHcC---
Confidence 988888888999999999998722 2233333333433 2667 5556799999643111 1224555555443
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||++| .+++++++++...+
T Consensus 142 --~~~~e~SAk~g----------~~V~~~F~~l~~~i 166 (189)
T cd04121 142 --MTFFEVSPLCN----------FNITESFTELARIV 166 (189)
T ss_pred --CEEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 58888888887543
No 174
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.72 E-value=1.9e-16 Score=139.48 Aligned_cols=157 Identities=16% Similarity=0.132 Sum_probs=103.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADY 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~ 88 (396)
..++|+++|..|+|||||+++|.+.... .+....+..+.....+..++ ..+.|||+||++.|
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~ 68 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERF 68 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC----------------CCcCccccceeEEEEEEECCEEEEEEEEeCCCchhH
Confidence 4689999999999999999999753210 00011122222223333333 46789999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
...+...+..+|++++|+|+++... ....+++..+... .+| ++|+.||+|+.+..... ..+...+.+..+
T Consensus 69 ~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~~~~---~~~~~~~~~~~~--- 141 (199)
T cd04110 69 RTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVC-KVLVGNKNDDPERKVVE---TEDAYKFAGQMG--- 141 (199)
T ss_pred HHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccccC---HHHHHHHHHHcC---
Confidence 8888888899999999999987321 2223333333332 456 55568999997542211 123444444433
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||+++ .++.++++++...+
T Consensus 142 --~~~~e~Sa~~~----------~gi~~lf~~l~~~~ 166 (199)
T cd04110 142 --ISLFETSAKEN----------INVEEMFNCITELV 166 (199)
T ss_pred --CEEEEEECCCC----------cCHHHHHHHHHHHH
Confidence 57999999997 58999999887654
No 175
>PLN03118 Rab family protein; Provisional
Probab=99.72 E-value=3.1e-16 Score=139.43 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=102.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
+..++|+++|+.++|||||+++|+....... ....|.+.......+......+.||||||+++|.
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~---------------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 76 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDL---------------APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR 76 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCc---------------CCCceeEEEEEEEEECCEEEEEEEEECCCchhhH
Confidence 4578999999999999999999986421100 0011222222222333333567899999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhH-HHHH-HHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQT-REHI-LLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt-~e~l-~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
......+..+|++++|+|+++...-+. .+.+ ..+.. .++| ++++.||+|+....... .++...+.+..+
T Consensus 77 ~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~i~---~~~~~~~~~~~~- 151 (211)
T PLN03118 77 TLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDRESERDVS---REEGMALAKEHG- 151 (211)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCccC---HHHHHHHHHHcC-
Confidence 888888899999999999987321111 1111 11221 2456 44567999987532211 112333344332
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
++++++||+++ .++++++++|...+.
T Consensus 152 ----~~~~e~SAk~~----------~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 152 ----CLFLECSAKTR----------ENVEQCFEELALKIM 177 (211)
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 57999999997 589999999886553
No 176
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.71 E-value=3.6e-16 Score=134.18 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=99.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhhH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYI 89 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~ 89 (396)
.++|+++|+.|+|||||+++|+.... +.+....+..+.....+..++ ..+.+|||||+++|.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 65 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRF----------------PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR 65 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC----------------CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH
Confidence 47999999999999999999975311 111111222333323333333 567899999999987
Q ss_pred H-HHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 90 K-NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 90 ~-~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
. .....+..+|++++|+|+++... .....++..+.. .++|. +++.||+|+........ .+..++.+..
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~~~~~---~~~~~~~~~~-- 139 (170)
T cd04115 66 KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPR-ILVGNKCDLREQIQVPT---DLAQRFADAH-- 139 (170)
T ss_pred HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCE-EEEEECccchhhcCCCH---HHHHHHHHHc--
Confidence 4 35556778999999999987433 222333333333 25774 55679999865422111 1223333332
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.++++++||+++.+. .++.+++..+...+
T Consensus 140 ---~~~~~e~Sa~~~~~~-------~~i~~~f~~l~~~~ 168 (170)
T cd04115 140 ---SMPLFETSAKDPSEN-------DHVEAIFMTLAHKL 168 (170)
T ss_pred ---CCcEEEEeccCCcCC-------CCHHHHHHHHHHHh
Confidence 367999999984221 57888888876543
No 177
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.71 E-value=1.9e-16 Score=134.80 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=97.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 92 (396)
++|+++|..++|||||+.++........ .+... + ........+......+.||||||+++|...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~---------~~~t~-----~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK---------YDPTI-----E-DFYRKEIEVDSSPSVLEILDTAGTEQFASMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC---------CCCch-----h-heEEEEEEECCEEEEEEEEECCCcccccchH
Confidence 6899999999999999999875421100 00000 0 0111112222223357799999999998888
Q ss_pred HhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15217 93 ITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 167 (396)
...+..+|++++|+|.++.. +....+.+..+.. .++| ++++.||+|+.+...... .+...+.+..+
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~~~~~---~~~~~~~~~~~----- 137 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESEREVSS---AEGRALAEEWG----- 137 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcCccCH---HHHHHHHHHhC-----
Confidence 88889999999999998732 1222333323322 3677 455679999865321110 12233333332
Q ss_pred CeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 168 ~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||+++ .++.++++++.+.+
T Consensus 138 ~~~~~~Sa~~~----------~~v~~l~~~l~~~l 162 (163)
T cd04176 138 CPFMETSAKSK----------TMVNELFAEIVRQM 162 (163)
T ss_pred CEEEEecCCCC----------CCHHHHHHHHHHhc
Confidence 57999999997 58999999887643
No 178
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.71 E-value=9.1e-17 Score=133.54 Aligned_cols=136 Identities=26% Similarity=0.251 Sum_probs=89.3
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh----hhhH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH----ADYI 89 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~----~~~~ 89 (396)
||+++|++|+|||||+++|++... ....|+.. +... .+|||||+ ..+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--------------------~~~~t~~~-----~~~~---~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--------------------LYKKTQAV-----EYND---GAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--------------------ccccceeE-----EEcC---eeecCchhhhhhHHHH
Confidence 799999999999999999975411 00112211 1111 68999997 2444
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 169 (396)
+.+...+..+|++++|+|++++...+..+.+. ..+.| +++++||+|+.+..... ++..++++..+. .+
T Consensus 54 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~---~~~~p-~ilv~NK~Dl~~~~~~~----~~~~~~~~~~~~----~~ 121 (142)
T TIGR02528 54 SALIVTAADADVIALVQSATDPESRFPPGFAS---IFVKP-VIGLVTKIDLAEADVDI----ERAKELLETAGA----EP 121 (142)
T ss_pred HHHHHHhhcCCEEEEEecCCCCCcCCChhHHH---hccCC-eEEEEEeeccCCcccCH----HHHHHHHHHcCC----Cc
Confidence 55555678999999999998865444333322 23446 55567999997532211 233444554443 47
Q ss_pred EEEecccccccCCCCCCCCCcHHHHHHHhh
Q psy15217 170 IIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (396)
Q Consensus 170 ~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~ 199 (396)
++++||+++ .+++++++++.
T Consensus 122 ~~~~Sa~~~----------~gi~~l~~~l~ 141 (142)
T TIGR02528 122 IFEISSVDE----------QGLEALVDYLN 141 (142)
T ss_pred EEEEecCCC----------CCHHHHHHHHh
Confidence 999999997 58999998874
No 179
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.71 E-value=3.3e-16 Score=139.67 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=102.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC---CeeEEEEecCChhhhH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK---ARHYAHVDCPGHADYI 89 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~~~iiDtpG~~~~~ 89 (396)
++|+++|..++|||||+++|++.... .+....++.+.....+..+ ...+.||||||++.|.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~----------------~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~ 64 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFG----------------KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG 64 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC----------------CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH
Confidence 58999999999999999999753210 0111123333333333332 3567899999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCC-CChhHHHHHHHHHHc-----CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADG-PMPQTREHILLARQV-----GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g-~~~qt~e~l~~~~~~-----~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
......+..+|++++|+|+++. .+....+++..+... ..+.++++.||+|+...... ...+...+.+..+
T Consensus 65 ~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v---~~~~~~~~~~~~~- 140 (215)
T cd04109 65 KMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV---KDDKHARFAQANG- 140 (215)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc---CHHHHHHHHHHcC-
Confidence 8888888999999999999872 122222233333332 12336667899999743211 1123444445443
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+++++||++| .++.++++++...+.
T Consensus 141 ----~~~~~iSAktg----------~gv~~lf~~l~~~l~ 166 (215)
T cd04109 141 ----MESCLVSAKTG----------DRVNLLFQQLAAELL 166 (215)
T ss_pred ----CEEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 47899999997 689999999887553
No 180
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.71 E-value=2.2e-16 Score=139.73 Aligned_cols=151 Identities=21% Similarity=0.232 Sum_probs=96.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCe-eEEEEecCChhh-
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR-HYAHVDCPGHAD- 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~~~iiDtpG~~~- 87 (396)
++.++|+++|++|+|||||+++|++...... ...+.|.+.....+...+. .+.||||||+.+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 102 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAE----------------DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRD 102 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccC----------------CccceeccceeEEEEecCCceEEEeCCCccccC
Confidence 4458999999999999999999987531100 0012333333333444343 899999999722
Q ss_pred --------hHHHHHhhhhcCCEEEEEEecCCCCChh-HHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHH
Q psy15217 88 --------YIKNMITGAAQMDGAILVCSAADGPMPQ-TREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIR 155 (396)
Q Consensus 88 --------~~~~~~~~~~~~d~~llVvda~~g~~~q-t~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~ 155 (396)
|. .+...+..+|++++|+|+++..... ...+...+... ++| +++|+||+|+.+.....
T Consensus 103 ~~~~~~~~~~-~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~Dl~~~~~~~-------- 172 (204)
T cd01878 103 LPHQLVEAFR-STLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKIDLLDDEELE-------- 172 (204)
T ss_pred CCHHHHHHHH-HHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEccccCChHHHH--------
Confidence 22 2233456899999999998754332 33333344433 466 55578999998753221
Q ss_pred HHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 156 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
..+.. ...+++++||+++ .++.+++++|...
T Consensus 173 ~~~~~-----~~~~~~~~Sa~~~----------~gi~~l~~~L~~~ 203 (204)
T cd01878 173 ERLEA-----GRPDAVFISAKTG----------EGLDELLEAIEEL 203 (204)
T ss_pred HHhhc-----CCCceEEEEcCCC----------CCHHHHHHHHHhh
Confidence 11111 2467999999997 5899999988764
No 181
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.71 E-value=1.4e-16 Score=121.40 Aligned_cols=88 Identities=76% Similarity=1.291 Sum_probs=81.2
Q ss_pred eeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEEEeCC
Q psy15217 304 HKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGG 383 (396)
Q Consensus 304 ~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~~ 383 (396)
+..|+|++.+|++..+++..+|+.||++++|+|+.++.|++....++..+++||.+.|+++|.+|+++++++||+||+++
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~~~~~i~~g~~~~v~l~l~~pv~~~~~~rf~lR~~~ 82 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPEGTEMVMPGDNVKMTVELIHPIALEKGLRFAIREGG 82 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccCcccccCCCCEEEEEEEECCcEEEecCCEEEEecCC
Confidence 67899999999986544557999999999999999999999888888889999999999999999999999999999999
Q ss_pred cEEEEEEE
Q psy15217 384 RTVGAGVV 391 (396)
Q Consensus 384 ~t~~~G~i 391 (396)
+|+|+|.|
T Consensus 83 ~tig~G~V 90 (90)
T cd03707 83 RTVGAGVI 90 (90)
T ss_pred cEEEEEEC
Confidence 99999986
No 182
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=5.2e-16 Score=161.10 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=116.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChh----
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA---- 86 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~---- 86 (396)
...+|+++|++++|||||+++|++..... .+...|+|.+......+..+..+.+|||||.+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~i---------------v~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~ 338 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAV---------------VEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE 338 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCcee---------------ecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc
Confidence 34689999999999999999998642111 11134888887777777888899999999965
Q ss_pred ----hhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 87 ----DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 87 ----~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
.+...+..++..+|++++|+|+.++......+.+..++..++|.+ +|+||+|+..... ...++. .++
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvI-lV~NK~D~~~~~~-------~~~~~~-~lg 409 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVV-LAVNKIDDQASEY-------DAAEFW-KLG 409 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEECcccccchh-------hHHHHH-HcC
Confidence 355666677889999999999999888888777888888899955 4679999865321 111221 234
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
+. ..+++||++| .|+.+|++++...++.
T Consensus 410 ~~----~~~~iSA~~g----------~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 410 LG----EPYPISAMHG----------RGVGDLLDEALDSLKV 437 (712)
T ss_pred CC----CeEEEECCCC----------CCchHHHHHHHHhccc
Confidence 41 2469999997 5899999999887754
No 183
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.71 E-value=2.6e-16 Score=132.63 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=99.1
Q ss_pred EEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHHh
Q psy15217 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMIT 94 (396)
Q Consensus 15 i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~ 94 (396)
|+++|+.|+|||||+++|.+..... +.. .|..............+.+||+||+.+|...+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~----------------~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE----------------DTI--PTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc----------------Ccc--CCCCcceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 7899999999999999997642110 001 1111222233445577899999999999998888
Q ss_pred hhhcCCEEEEEEecCCC-CChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15217 95 GAAQMDGAILVCSAADG-PMPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169 (396)
Q Consensus 95 ~~~~~d~~llVvda~~g-~~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 169 (396)
.+..+|++++|+|+++. ...+..+++..+.. .++| +++++||+|+.+.... +. +...+..-......++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~-~~----~~~~~~~~~~~~~~~~ 137 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGALSV-DE----LIEQMNLKSITDREVS 137 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCcCH-HH----HHHHhCcccccCCceE
Confidence 89999999999999862 22333344443322 4677 4556799998764221 11 1111111111123478
Q ss_pred EEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 170 ~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
++++|++++ .++.+++++|.+
T Consensus 138 ~~~~Sa~~~----------~gi~~l~~~l~~ 158 (159)
T cd04159 138 CYSISCKEK----------TNIDIVLDWLIK 158 (159)
T ss_pred EEEEEeccC----------CChHHHHHHHhh
Confidence 999999997 589999998864
No 184
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.71 E-value=1.6e-16 Score=136.24 Aligned_cols=156 Identities=19% Similarity=0.157 Sum_probs=99.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEe--eeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT--AHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
+||+++|..|+|||||+++|++....... . ....+. ...........+.+||+||+++|..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~ 63 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEY----------------V-PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR 63 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC----------------C-CceeeeeEEEEEECCEEEEEEEEeCCCcccccc
Confidence 58999999999999999999865321000 0 011111 1112223345688999999998876
Q ss_pred HHHhhhhcCCEEEEEEecCCCCC--hhHHHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHH--------HHHHHHHHH
Q psy15217 91 NMITGAAQMDGAILVCSAADGPM--PQTREHILLARQV--GVPYIVVFLNKADMVDDEELLEL--------VEIEIRELL 158 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~--~qt~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~--------i~~~~~~~l 158 (396)
.....+..+|++++|+|+++... ....+++..+... ++| ++++.||+|+.+....... ...+...+.
T Consensus 64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~ 142 (171)
T cd00157 64 LRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLA 142 (171)
T ss_pred cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHH
Confidence 66666788999999999987221 1122233333332 477 5556899999865432110 122344455
Q ss_pred hhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 159 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
...+. .+++++||+++ .++.++++++.+
T Consensus 143 ~~~~~----~~~~~~Sa~~~----------~gi~~l~~~i~~ 170 (171)
T cd00157 143 KEIGA----IGYMECSALTQ----------EGVKEVFEEAIR 170 (171)
T ss_pred HHhCC----eEEEEeecCCC----------CCHHHHHHHHhh
Confidence 55443 48999999997 589999988754
No 185
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.71 E-value=3.8e-16 Score=133.02 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=97.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEe--eeeEEe-eCCeeEEEEecCChhhhH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT--AHIEYE-TKARHYAHVDCPGHADYI 89 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~-~~~~~~~iiDtpG~~~~~ 89 (396)
++|+++|..++|||||+++|..... ..+.+....+..+. ....+. .....+.+|||||++.|.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGA--------------VFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--------------CcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHH
Confidence 5899999999999999999974210 00111111111222 222222 234678899999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
......+..+|++++|+|.++... ......+..+... ++| +++++||+|+.+..+.... +...+....
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~---~~~~~~~~~----- 137 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAEVTDA---QAQAFAQAN----- 137 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccCCCHH---HHHHHHHHc-----
Confidence 888888889999999999986321 1122223333332 567 5556899999754221111 112222222
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
..+++++||.++ .++.++++.+.+.
T Consensus 138 ~~~~~~~Sa~~~----------~gi~~l~~~l~~~ 162 (164)
T cd04101 138 QLKFFKTSALRG----------VGYEEPFESLARA 162 (164)
T ss_pred CCeEEEEeCCCC----------CChHHHHHHHHHH
Confidence 257999999997 5899999988764
No 186
>KOG0084|consensus
Probab=99.71 E-value=3.8e-16 Score=130.60 Aligned_cols=158 Identities=17% Similarity=0.166 Sum_probs=113.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCe--eEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~~ 87 (396)
...+||+++|..|+|||.|+-++.. |...++....+.++.....++.+++ .+.+|||+|+++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~----------------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQER 70 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKD----------------DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQER 70 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhcc----------------CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHH
Confidence 4578999999999999999999864 4445555666667777777777665 467999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCC-CCChhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~-g~~~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
|...+.++.+.|+++|+|.|.+. ..+.....++..+.. -++|.++ +-||+|+.+.... ..++.+.+...++.
T Consensus 71 Frtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lL-VGNK~Dl~~~~~v---~~~~a~~fa~~~~~ 146 (205)
T KOG0084|consen 71 FRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLL-VGNKCDLTEKRVV---STEEAQEFADELGI 146 (205)
T ss_pred HhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEE-EeeccccHhheec---CHHHHHHHHHhcCC
Confidence 99999999999999999999987 222333333434443 3678666 4699999764211 11234566666654
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.+++++||+.+ .++++.+..|...
T Consensus 147 ----~~f~ETSAK~~----------~NVe~~F~~la~~ 170 (205)
T KOG0084|consen 147 ----PIFLETSAKDS----------TNVEDAFLTLAKE 170 (205)
T ss_pred ----cceeecccCCc----------cCHHHHHHHHHHH
Confidence 23999999986 3666666665543
No 187
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.71 E-value=2.2e-16 Score=138.39 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=99.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~ 90 (396)
+||+++|..++|||||+++|+....... .. ....|.+... ..+..++ ..+.+||+||+++|..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~-----------~~--~~t~~~~~~~--~~~~~~~~~~~l~i~D~~G~~~~~~ 65 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVG-----------PY--QNTIGAAFVA--KRMVVGERVVTLGIWDTAGSERYEA 65 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCc-----------Cc--ccceeeEEEE--EEEEECCEEEEEEEEECCCchhhhh
Confidence 5899999999999999999985421100 00 0001111111 2233343 3456999999999877
Q ss_pred HHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHH-HHHHHHHHhhcCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGP-MPQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELV-EIEIRELLNKYEFPGN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i-~~~~~~~l~~~~~~~~ 166 (396)
.....+..+|++++|+|.++.. +......+..+... ++| ++++.||+|+.+.......+ ..++..+....+
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~---- 140 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK---- 140 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCC-EEEEEEcccccccccccCccCHHHHHHHHHHcC----
Confidence 7777778999999999998732 12223333444433 577 55568999986532111111 123444444433
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||+++ .++.+|++++.+.+
T Consensus 141 -~~~~~~Sa~~~----------~gv~~l~~~i~~~~ 165 (193)
T cd04118 141 -AQHFETSSKTG----------QNVDELFQKVAEDF 165 (193)
T ss_pred -CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999997 58999999887644
No 188
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.71 E-value=2e-16 Score=135.18 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=97.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~ 90 (396)
+||+++|..|+|||||+++++...... +....+..+.....+..+ ...+.+|||||+++|..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK----------------KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG 64 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc
Confidence 489999999999999999997532100 001111122333333333 34678999999999877
Q ss_pred HHHhhhhcCCEEEEEEecCCCCChhHH-HHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPMPQTR-EHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~~qt~-e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 167 (396)
.....+..+|++++|+|.++...-+.. ..+..+... ++| ++++.||+|+...... .+..++.+. ..
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~~~-----~~~~~~~~~-----~~ 133 (166)
T cd00877 65 LRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRKVK-----AKQITFHRK-----KN 133 (166)
T ss_pred ccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhcccccCC-----HHHHHHHHH-----cC
Confidence 666677889999999999874322211 222222222 577 5556799999743211 111222222 23
Q ss_pred CeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 168 ~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+++++||+++ .++++++++|.+.+.
T Consensus 134 ~~~~e~Sa~~~----------~~v~~~f~~l~~~~~ 159 (166)
T cd00877 134 LQYYEISAKSN----------YNFEKPFLWLARKLL 159 (166)
T ss_pred CEEEEEeCCCC----------CChHHHHHHHHHHHH
Confidence 67999999997 689999999987553
No 189
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.71 E-value=2.1e-16 Score=135.22 Aligned_cols=159 Identities=23% Similarity=0.201 Sum_probs=101.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~ 93 (396)
+|+++|..++|||||+++|.+.... ....|+......++..+..+.+||+||+++|...+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~-------------------~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPK-------------------KVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCc-------------------cccCcccceEEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 4799999999999999999753100 011222222334555678899999999999998888
Q ss_pred hhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHH--HHHHHhhcCCCCC
Q psy15217 94 TGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIE--IRELLNKYEFPGN 166 (396)
Q Consensus 94 ~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~--~~~~l~~~~~~~~ 166 (396)
..+..+|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+.... +.+.+. +..+.++.+ .
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~~~-~~i~~~~~l~~~~~~~~---~ 136 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP-ILVLANKQDKKNALLG-ADVIEYLSLEKLVNENK---S 136 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCCCH-HHHHHhcCcccccCCCC---c
Confidence 8899999999999998732 2333434433322 3677 5556899999764211 111111 122221111 2
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
.++++++||++|... |. ..++.+.++||..
T Consensus 137 ~~~~~~~Sa~~g~~~---~~-~~g~~~~~~wl~~ 166 (167)
T cd04161 137 LCHIEPCSAIEGLGK---KI-DPSIVEGLRWLLA 166 (167)
T ss_pred eEEEEEeEceeCCCC---cc-ccCHHHHHHHHhc
Confidence 467999999996321 11 1478899998853
No 190
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.71 E-value=9.8e-16 Score=134.02 Aligned_cols=158 Identities=18% Similarity=0.150 Sum_probs=102.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeee-eEEeeC--CeeEEEEecCChhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAH-IEYETK--ARHYAHVDCPGHADY 88 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~-~~~~~~--~~~~~iiDtpG~~~~ 88 (396)
.++|+++|+.++|||||+.++....-. + +...|+...+ ..+..+ ...+.+|||||+++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~------------~------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~ 64 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFP------------K------EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY 64 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCC------------c------CCCCceEeeeEEEEEECCEEEEEEEEECCCchhh
Confidence 589999999999999999999753210 0 0112222111 112223 345789999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCChhHHHHH-----HHHHH--cCCCeEEEEEeccCCCCHHHHHHHH---------HH
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPMPQTREHI-----LLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EI 152 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l-----~~~~~--~~ip~iIvviNK~D~~~~~~~~~~i---------~~ 152 (396)
........+.+|++++|+|.++ ..+.+.+ ..+.. -++| ++++.||.|+.+.....+.+ .+
T Consensus 65 ~~l~~~~~~~a~~~ilvydit~---~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~~~~~v~~~ 140 (191)
T cd01875 65 DRLRTLSYPQTNVFIICFSIAS---PSSYENVRHKWHPEVCHHCPNVP-ILLVGTKKDLRNDADTLKKLKEQGQAPITPQ 140 (191)
T ss_pred hhhhhhhccCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhhCCCCC-EEEEEeChhhhcChhhHHHHhhccCCCCCHH
Confidence 9888888889999999999987 2232222 21221 3677 55567999996532211111 12
Q ss_pred HHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 153 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
+...+.+..+. .+++++||++| .++.++++.+.+.+..|
T Consensus 141 ~~~~~a~~~~~----~~~~e~SAk~g----------~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 141 QGGALAKQIHA----VKYLECSALNQ----------DGVKEVFAEAVRAVLNP 179 (191)
T ss_pred HHHHHHHHcCC----cEEEEeCCCCC----------CCHHHHHHHHHHHHhcc
Confidence 33444444432 58999999997 58999999988755443
No 191
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.71 E-value=5.1e-16 Score=133.88 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=99.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeee-eEEeeCC--eeEEEEecCChhhhH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAH-IEYETKA--RHYAHVDCPGHADYI 89 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~-~~~~~~~--~~~~iiDtpG~~~~~ 89 (396)
++|+++|..|+|||||+.++....-. +. ...|+...+ ..+..++ ..+.||||||+++|.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~------------~~------~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP------------SE------YVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD 63 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC------------CC------CCCceeeeeEEEEEECCEEEEEEEEECCCccchh
Confidence 68999999999999999999853210 00 012221111 1223333 567899999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCC-hhHHH-HHHHHHH--cCCCeEEEEEeccCCCCHHHHHHHH---------HHHHHH
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPM-PQTRE-HILLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EIEIRE 156 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~-~qt~e-~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~i---------~~~~~~ 156 (396)
..+...+..+|++++|+|.++... ....+ ++..+.. .++| +|++.||+|+.+..+..+.+ .++...
T Consensus 64 ~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~ 142 (175)
T cd01874 64 RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP-FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEK 142 (175)
T ss_pred hhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHH
Confidence 777778889999999999987322 22222 3323332 2567 55678999986543222111 112333
Q ss_pred HHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 157 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
+.+..+ ..+++++||++| .|+.++++.+..
T Consensus 143 ~a~~~~----~~~~~e~SA~tg----------~~v~~~f~~~~~ 172 (175)
T cd01874 143 LARDLK----AVKYVECSALTQ----------KGLKNVFDEAIL 172 (175)
T ss_pred HHHHhC----CcEEEEecCCCC----------CCHHHHHHHHHH
Confidence 444333 268999999998 589999988765
No 192
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.71 E-value=1.9e-16 Score=138.47 Aligned_cols=153 Identities=20% Similarity=0.183 Sum_probs=97.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEE---eeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN---TAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~---~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
+|+++|..|+|||||+++|....... .. ..|+. .....+......+.||||||+++|..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~------------~~------~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 62 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE------------TY------DPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA 62 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc------------cC------CCchHhhEEEEEEECCEEEEEEEEECCCchhhHH
Confidence 58999999999999999997532110 00 01110 11111222223578999999999998
Q ss_pred HHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH------cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~------~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
.....+..+|++++|+|.++... ....+.+..+.. .++| +|++.||+|+.+..... ..+...+.+.++
T Consensus 63 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~~~v~---~~~~~~~~~~~~- 137 (190)
T cd04144 63 LRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP-IMIVGNKCDKVYEREVS---TEEGAALARRLG- 137 (190)
T ss_pred HHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC-EEEEEEChhccccCccC---HHHHHHHHHHhC-
Confidence 88888999999999999987321 222233333322 2467 55568999996532211 112333444333
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+++++||++| .++.++++++.+.+.
T Consensus 138 ----~~~~e~SAk~~----------~~v~~l~~~l~~~l~ 163 (190)
T cd04144 138 ----CEFIEASAKTN----------VNVERAFYTLVRALR 163 (190)
T ss_pred ----CEEEEecCCCC----------CCHHHHHHHHHHHHH
Confidence 57999999997 588898888876543
No 193
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.70 E-value=1.2e-16 Score=119.67 Aligned_cols=83 Identities=40% Similarity=0.735 Sum_probs=77.9
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCC
Q psy15217 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERG 292 (396)
Q Consensus 213 ~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G 292 (396)
|+|+|+++|++++.|+++.|+|++|.+++||++.++|.+ ...+|+||+.+++++++|.|||.|+++|++++..++++|
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~--~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G 78 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG--EETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERG 78 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC--ceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCc
Confidence 689999999999999999999999999999999999854 679999999999999999999999999999888899999
Q ss_pred eEEec
Q psy15217 293 QVLAK 297 (396)
Q Consensus 293 ~vl~~ 297 (396)
++|+.
T Consensus 79 ~vl~~ 83 (83)
T cd03696 79 DVLSS 83 (83)
T ss_pred cEEcC
Confidence 99973
No 194
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=9.6e-16 Score=127.13 Aligned_cols=167 Identities=20% Similarity=0.157 Sum_probs=116.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC-eeEEEEecCChhhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHADY 88 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpG~~~~ 88 (396)
....+|++.|..++||||++.++.....-....... -+.... .|..|+...+...+..+ ..+.++|||||++|
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~----~~s~k~--kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF 81 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADAS----SVSGKG--KRPTTVAMDFGSIELDEDTGVHLFGTPGQERF 81 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeecccc----cccccc--ccceeEeecccceEEcCcceEEEecCCCcHHH
Confidence 346799999999999999999998764211100000 000000 33467666666666655 78999999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcC-CCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVG-VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~-ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 167 (396)
--.+.-..+.+++++++||++.+..-..++.+......+ +| ++|++||.|+.+... . ++++++++... ..
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a~p-p----e~i~e~l~~~~---~~ 152 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIP-VVVAINKQDLFDALP-P----EKIREALKLEL---LS 152 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCC-EEEEeeccccCCCCC-H----HHHHHHHHhcc---CC
Confidence 988888899999999999999966655567777777777 66 666889999987511 1 13444444332 25
Q ss_pred CeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 168 ~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
+|+|+.+|..+ ++..+.++.+...
T Consensus 153 ~~vi~~~a~e~----------~~~~~~L~~ll~~ 176 (187)
T COG2229 153 VPVIEIDATEG----------EGARDQLDVLLLK 176 (187)
T ss_pred Cceeeeecccc----------hhHHHHHHHHHhh
Confidence 79999999875 4666666666553
No 195
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.70 E-value=6.2e-16 Score=134.14 Aligned_cols=157 Identities=17% Similarity=0.224 Sum_probs=101.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~ 90 (396)
+||+++|..++|||||+.++...... .+....+..+.....+..++ ..+.+|||+|+++|..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~----------------~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~ 64 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFD----------------EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN 64 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH
Confidence 58999999999999999999754211 01111122222222333343 4578999999999988
Q ss_pred HHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHc---CCCeEEEEEeccCCCCH--HHHHHHHHHHHHHHHhhcCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGP-MPQTREHILLARQV---GVPYIVVFLNKADMVDD--EELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~--~~~~~~i~~~~~~~l~~~~~~ 164 (396)
.+...+..+|++++|+|.++.. +....+++..+... .+| ++ +.||+|+... .+..+.+.++..++.+..+
T Consensus 65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-il-VgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-- 140 (182)
T cd04128 65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-IL-VGTKYDLFADLPPEEQEEITKQARKYAKAMK-- 140 (182)
T ss_pred hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EE-EEEchhccccccchhhhhhHHHHHHHHHHcC--
Confidence 7778888999999999998732 12222333444332 344 54 5799999631 1111122234555555443
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||++| .+++++++++.+.+
T Consensus 141 ---~~~~e~SAk~g----------~~v~~lf~~l~~~l 165 (182)
T cd04128 141 ---APLIFCSTSHS----------INVQKIFKIVLAKA 165 (182)
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999997 58999999887654
No 196
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.70 E-value=3.1e-16 Score=162.09 Aligned_cols=153 Identities=23% Similarity=0.300 Sum_probs=108.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 91 (396)
.++|+++|++|+|||||+|+|++.....+ ...|+|.+.....++.++..+.++||||+.+|...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vg----------------n~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~ 66 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVG----------------NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccC----------------CCCCceEeeEEEEEEcCceEEEEEECCCccccccc
Confidence 47899999999999999999986432111 12488988887778888889999999998776421
Q ss_pred --------H--Hhh--hhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q psy15217 92 --------M--ITG--AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (396)
Q Consensus 92 --------~--~~~--~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~ 159 (396)
. ... ...+|++++|+|+++.... ......+..+++|. ++++||+|+.+.... ..+++++.+
T Consensus 67 ~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~--l~l~~ql~e~giPv-IvVlNK~Dl~~~~~i----~id~~~L~~ 139 (772)
T PRK09554 67 SSQTSLDEQIACHYILSGDADLLINVVDASNLERN--LYLTLQLLELGIPC-IVALNMLDIAEKQNI----RIDIDALSA 139 (772)
T ss_pred cccccHHHHHHHHHHhccCCCEEEEEecCCcchhh--HHHHHHHHHcCCCE-EEEEEchhhhhccCc----HHHHHHHHH
Confidence 1 111 1368999999999874432 23334566789995 456899998754222 123334444
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.++ +|++++||.++ .|++++.+.+.+..
T Consensus 140 ~LG-----~pVvpiSA~~g----------~GIdeL~~~I~~~~ 167 (772)
T PRK09554 140 RLG-----CPVIPLVSTRG----------RGIEALKLAIDRHQ 167 (772)
T ss_pred HhC-----CCEEEEEeecC----------CCHHHHHHHHHHhh
Confidence 444 58999999997 58999999988754
No 197
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.70 E-value=2.3e-16 Score=154.98 Aligned_cols=149 Identities=21% Similarity=0.215 Sum_probs=106.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH-
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI- 89 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~- 89 (396)
..++|+++|.+|+|||||+++|++..... .....|.|.+.....+..++..+.+|||||++++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~---------------v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAI---------------VTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDD 278 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcc---------------cCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCcc
Confidence 45899999999999999999998642111 11123677777666777788889999999986542
Q ss_pred -------HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 90 -------KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 90 -------~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
..+...+..+|++++|+|++++...+..+.+.. ..+.| +++|+||+|+.+..... .
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~p-iiiV~NK~DL~~~~~~~-----------~--- 341 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKP-VIVVLNKADLTGEIDLE-----------E--- 341 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCC-cEEEEEhhhccccchhh-----------h---
Confidence 224446778999999999988655444433332 34667 45568999997642210 1
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
. ...+++++||++| .|+++|++++.+.++
T Consensus 342 ~--~~~~~i~iSAktg----------~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 342 E--NGKPVIRISAKTG----------EGIDELREAIKELAF 370 (449)
T ss_pred c--cCCceEEEEeeCC----------CCHHHHHHHHHHHHh
Confidence 1 2357999999997 589999999988664
No 198
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.70 E-value=5.9e-16 Score=130.21 Aligned_cols=154 Identities=24% Similarity=0.259 Sum_probs=103.1
Q ss_pred EEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC-CeeEEEEecCChhhhH------
Q psy15217 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-ARHYAHVDCPGHADYI------ 89 (396)
Q Consensus 17 i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~~~------ 89 (396)
++|+.|+|||||+++|++..... .....+.|.......+... ...+.+|||||+..+.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI---------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc---------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH
Confidence 58999999999999998643221 1112244444444444433 6689999999976654
Q ss_pred -HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15217 90 -KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (396)
Q Consensus 90 -~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 168 (396)
..+...+..+|++++|+|+..................+.| +++++||+|+........... ...... ......
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~--~~~~~~---~~~~~~ 139 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKP-VLLVLNKIDLLPEEEEEELLE--LRLLIL---LLLLGL 139 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCe-EEEEEEccccCChhhHHHHHH--HHHhhc---ccccCC
Confidence 3344467789999999999997766666555666667888 555789999987643322211 011111 112457
Q ss_pred eEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 169 ~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
|++++|+.++ .++.++++++.+.
T Consensus 140 ~~~~~sa~~~----------~~v~~l~~~l~~~ 162 (163)
T cd00880 140 PVIAVSALTG----------EGIDELREALIEA 162 (163)
T ss_pred ceEEEeeecc----------CCHHHHHHHHHhh
Confidence 8999999987 5889999988764
No 199
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.70 E-value=3.8e-16 Score=134.37 Aligned_cols=155 Identities=16% Similarity=0.110 Sum_probs=98.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceE-EeeeeEEeeCC--eeEEEEecCChhhhH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITI-NTAHIEYETKA--RHYAHVDCPGHADYI 89 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~-~~~~~~~~~~~--~~~~iiDtpG~~~~~ 89 (396)
+||+++|+.++|||||+++|........ ...|+ +.....+..++ ..+.+|||||+++|.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 62 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEE------------------YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD 62 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC------------------CCCceeeeeEEEEEECCEEEEEEEEeCCCccccc
Confidence 5899999999999999999976421100 00111 11111222333 346799999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChh-HH-HHHHHHH--HcCCCeEEEEEeccCCCCHHHHHHH---------HHHHHHH
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQ-TR-EHILLAR--QVGVPYIVVFLNKADMVDDEELLEL---------VEIEIRE 156 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~q-t~-e~l~~~~--~~~ip~iIvviNK~D~~~~~~~~~~---------i~~~~~~ 156 (396)
.........+|++++|+|..+...-+ .. ..+..+. ..++|. +++.||+|+.+.....+. ..++...
T Consensus 63 ~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~pi-ivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 141 (174)
T cd04135 63 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPY-LLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQK 141 (174)
T ss_pred ccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEeEchhhhcChhhHHHHhhccCCCCCHHHHHH
Confidence 77777788999999999998732211 11 1222222 246774 556799998654221110 1123445
Q ss_pred HHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 157 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
+.+.++. .+++++||+++ .|+.++++.+..
T Consensus 142 ~~~~~~~----~~~~e~Sa~~~----------~gi~~~f~~~~~ 171 (174)
T cd04135 142 LAKEIGA----HCYVECSALTQ----------KGLKTVFDEAIL 171 (174)
T ss_pred HHHHcCC----CEEEEecCCcC----------CCHHHHHHHHHH
Confidence 5555543 57999999998 589999988765
No 200
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.69 E-value=6.1e-16 Score=131.18 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=96.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~ 93 (396)
+|+++|..|+|||||+++|++..... . ....|.+. ....+ .....+.+||+||++++...+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~------------~---~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~ 62 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT------------T---IPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWK 62 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc------------c---cCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHH
Confidence 48999999999999999998642110 0 00112111 11122 1346789999999999988888
Q ss_pred hhhhcCCEEEEEEecCCCC-ChhHHHHHHHH-H---HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC-CCC
Q psy15217 94 TGAAQMDGAILVCSAADGP-MPQTREHILLA-R---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP-GND 167 (396)
Q Consensus 94 ~~~~~~d~~llVvda~~g~-~~qt~e~l~~~-~---~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~-~~~ 167 (396)
..+..+|++++|+|+.+.. .......+... . ..++| +++++||+|+..... .+ ++...++...+. ...
T Consensus 63 ~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~ 136 (160)
T cd04156 63 CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVP-VVLLANKQDLPGALT-AE----EITRRFKLKKYCSDRD 136 (160)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECcccccCcC-HH----HHHHHcCCcccCCCCc
Confidence 8889999999999998743 12222222222 1 13677 556789999865311 11 222222111111 124
Q ss_pred CeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 168 ~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
.+++++||++| .|+++++++|.+
T Consensus 137 ~~~~~~Sa~~~----------~gv~~~~~~i~~ 159 (160)
T cd04156 137 WYVQPCSAVTG----------EGLAEAFRKLAS 159 (160)
T ss_pred EEEEecccccC----------CChHHHHHHHhc
Confidence 57999999997 689999998854
No 201
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.69 E-value=8.9e-16 Score=132.24 Aligned_cols=156 Identities=18% Similarity=0.143 Sum_probs=99.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEE-ee--eeEEeeCCeeEEEEecCChhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN-TA--HIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~-~~--~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
+++|+++|..++|||||+.++....-. . + ...|+. .. ...++.....+.||||||+++|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~------------~----~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFP------------G----E--YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 62 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCC------------C----c--CCCcceeeeEEEEEECCEEEEEEEEECCCchhh
Confidence 479999999999999999998753210 0 0 011111 11 1122223356789999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHH-HHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHH---------HHHHH
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTR-EHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EIEIR 155 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~-e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i---------~~~~~ 155 (396)
...+...+..+|++|+|+|.++... .... .++..+... ++| ++++.||+|+.+.....+.+ ..+..
T Consensus 63 ~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 141 (174)
T cd01871 63 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 141 (174)
T ss_pred hhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhccChhhHHHHhhccCCCCCHHHHH
Confidence 8887778889999999999987321 1111 233333322 567 55568999996532111111 22334
Q ss_pred HHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 156 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
.+.+.++. .+++++||++| .+++++++.+.+
T Consensus 142 ~~~~~~~~----~~~~e~Sa~~~----------~~i~~~f~~l~~ 172 (174)
T cd01871 142 AMAKEIGA----VKYLECSALTQ----------KGLKTVFDEAIR 172 (174)
T ss_pred HHHHHcCC----cEEEEeccccc----------CCHHHHHHHHHH
Confidence 45555442 58999999998 689999998865
No 202
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.69 E-value=6.7e-16 Score=134.87 Aligned_cols=160 Identities=16% Similarity=0.083 Sum_probs=100.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEee---eeEEeeCCeeEEEEecCChhhhH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA---HIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~---~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
.+|+++|..|+|||||+.+|+...... + ...|+... ....+.....+.||||||+++|.
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~----------------~--~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~ 62 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ----------------V--YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFD 62 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC----------------c--cCCcceeeeEEEEEECCEEEEEEEEECCCChhcc
Confidence 379999999999999999998542110 0 01121111 11122223567899999999997
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhHH--HHHHHHHH--cCCCeEEEEEeccCCCCHHHHHHH---------HHHHHHH
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQTR--EHILLARQ--VGVPYIVVFLNKADMVDDEELLEL---------VEIEIRE 156 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt~--e~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~---------i~~~~~~ 156 (396)
..+...+..+|++++|+|.++...-+.. .++..+.. .++| ++++.||+|+....+..+. ..++...
T Consensus 63 ~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 141 (189)
T cd04134 63 RLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVK-LVLVALKCDLREARNERDDLQRYGKHTISYEEGLA 141 (189)
T ss_pred ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccChhhHHHHhhccCCCCCHHHHHH
Confidence 7776777899999999998873211111 23333333 2667 5557899999764221111 0112334
Q ss_pred HHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 157 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
+.+..+ .++++++||++| .++.++++++.+.+..+
T Consensus 142 ~~~~~~----~~~~~e~SAk~~----------~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 142 VAKRIN----ALRYLECSAKLN----------RGVNEAFTEAARVALNV 176 (189)
T ss_pred HHHHcC----CCEEEEccCCcC----------CCHHHHHHHHHHHHhcc
Confidence 444333 268999999997 58999999988765443
No 203
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.69 E-value=4.9e-16 Score=133.20 Aligned_cols=159 Identities=18% Similarity=0.082 Sum_probs=100.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
++.++|+++|..|+|||||++++++..... ... ....+.........+......+.+||++|.+.|.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~-----------~~~--~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~ 68 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSL-----------NAY--SPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI 68 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCc-----------ccC--CCccCcceEEEEEEECCeEEEEEEEecCCccccc
Confidence 467899999999999999999998642110 000 0000111111122232233567899999999987
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhHHHH----HHHHHH-cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQTREH----ILLARQ-VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt~e~----l~~~~~-~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
......+..+|++++|+|+++. .+.+. +..... .++| +++++||+|+.+.... ...+..++.+.+++
T Consensus 69 ~~~~~~~~~~d~~llv~d~~~~---~s~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~---~~~~~~~~~~~~~~- 140 (169)
T cd01892 69 LLNDAELAACDVACLVYDSSDP---KSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQR---YEVQPDEFCRKLGL- 140 (169)
T ss_pred ccchhhhhcCCEEEEEEeCCCH---HHHHHHHHHHHHhccCCCCe-EEEEEEcccccccccc---cccCHHHHHHHcCC-
Confidence 7777777899999999999763 33322 222211 2677 5557899998653211 11123344454544
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||+++ .++.++++.+.+.+
T Consensus 141 ---~~~~~~Sa~~~----------~~v~~lf~~l~~~~ 165 (169)
T cd01892 141 ---PPPLHFSSKLG----------DSSNELFTKLATAA 165 (169)
T ss_pred ---CCCEEEEeccC----------ccHHHHHHHHHHHh
Confidence 23689999997 58999999987754
No 204
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.69 E-value=4.8e-16 Score=133.08 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=98.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 91 (396)
.++|+++|.+|+|||||+++|.+.... +.... .-+.. ......+......+.+|||||+++|...
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~------------~~~~~--t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 65 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFI------------ESYDP--TIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAM 65 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCC------------cccCC--cchhe-EEEEEEECCEEEEEEEEeCCCcccchhh
Confidence 368999999999999999999754211 00000 00000 0111122223346789999999999988
Q ss_pred HHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHH----HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 92 MITGAAQMDGAILVCSAADGPM-PQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~----~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
+...+..+|++++|+|.++... .....+..... ..++| ++++.||+|+.+.... ...+...+.+..+
T Consensus 66 ~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~~~---~~~~~~~~~~~~~---- 137 (168)
T cd04177 66 RELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQV---SREDGVSLSQQWG---- 137 (168)
T ss_pred hHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccCcc---CHHHHHHHHHHcC----
Confidence 8888899999999999987321 11111122221 23678 4456799998754211 1112333444433
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+|++++||+++ .++.++++++...+
T Consensus 138 ~~~~~~~SA~~~----------~~i~~~f~~i~~~~ 163 (168)
T cd04177 138 NVPFYETSARKR----------TNVDEVFIDLVRQI 163 (168)
T ss_pred CceEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 268999999997 58889999887643
No 205
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.69 E-value=9.7e-16 Score=134.87 Aligned_cols=156 Identities=19% Similarity=0.133 Sum_probs=97.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhhHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIKN 91 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~ 91 (396)
+|+++|+.|+|||||+++|+....... ....+.+.....+...+ ..+.|||+||+.+|...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 63 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK-----------------YRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAM 63 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-----------------CCCchhhheeEEEEECCEEEEEEEEECCCchhhhHH
Confidence 589999999999999999986421100 00011111222233333 56789999999999887
Q ss_pred HHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 92 MITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
....+..+|++++|+|+.+... ......+..+.. .++|. |+++||+|+...+..... .+...... .. .
T Consensus 64 ~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl~~~~~~v~~--~~~~~~~~-~~---~ 136 (198)
T cd04147 64 RKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPI-VVVGNKADSLEEERQVPA--KDALSTVE-LD---W 136 (198)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEEccccccccccccH--HHHHHHHH-hh---c
Confidence 7778889999999999987321 111111122222 36784 556799999763111110 11111111 11 1
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
..+++++||++| .++.++++++.+.+.
T Consensus 137 ~~~~~~~Sa~~g----------~gv~~l~~~l~~~~~ 163 (198)
T cd04147 137 NCGFVETSAKDN----------ENVLEVFKELLRQAN 163 (198)
T ss_pred CCcEEEecCCCC----------CCHHHHHHHHHHHhh
Confidence 357999999997 689999999987654
No 206
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.69 E-value=8.6e-16 Score=132.07 Aligned_cols=154 Identities=20% Similarity=0.213 Sum_probs=99.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEee-eeEEeeCC--eeEEEEecCChhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA-HIEYETKA--RHYAHVDCPGHADY 88 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~--~~~~iiDtpG~~~~ 88 (396)
.++|+++|..++|||||+.++....... . ...|+... ...+..++ ..+.+|||||.++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~------------~------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 63 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPD------------Y------HDPTIEDAYKQQARIDNEPALLDILDTAGQAEF 63 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC------------C------cCCcccceEEEEEEECCEEEEEEEEeCCCchhh
Confidence 4799999999999999999997542110 0 01111111 11122233 45789999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
...+...+..+|++++|+|.++... ....+....+.. .++| ++++.||+|+.+.... ..++...+.+..+
T Consensus 64 ~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~~~v---~~~~~~~~a~~~~- 138 (172)
T cd04141 64 TAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKVDLESQRQV---TTEEGRNLAREFN- 138 (172)
T ss_pred HHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhcCcc---CHHHHHHHHHHhC-
Confidence 8888888899999999999987432 222222222322 2577 5557899998643111 1112334444433
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .+++++++++...+
T Consensus 139 ----~~~~e~Sa~~~----------~~v~~~f~~l~~~~ 163 (172)
T cd04141 139 ----CPFFETSAALR----------HYIDDAFHGLVREI 163 (172)
T ss_pred ----CEEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 68999999997 58999999887644
No 207
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.69 E-value=9.3e-16 Score=130.00 Aligned_cols=154 Identities=21% Similarity=0.156 Sum_probs=98.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee--CCeeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET--KARHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~--~~~~~~iiDtpG~~~~~~ 90 (396)
+||+++|..++|||||+++|+...... ......+.......+.. ....+.+||+||++.|..
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 64 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE----------------KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC----------------CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH
Confidence 489999999999999999998642111 00111212222222222 234678999999999988
Q ss_pred HHHhhhhcCCEEEEEEecCCCCCh-hHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~~-qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.....+..+|++++|+|.+++..- +....+..+.. .++| +++++||+|+....... .+++..+.+..+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~~~---~~~~~~~~~~~~---- 136 (162)
T cd04123 65 LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRVVS---KSEAEEYAKSVG---- 136 (162)
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCC---HHHHHHHHHHcC----
Confidence 777778899999999999874322 22222222222 2566 55568999987532111 112334444333
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.+++++|++++ .++.++++++.+.
T Consensus 137 -~~~~~~s~~~~----------~gi~~~~~~l~~~ 160 (162)
T cd04123 137 -AKHFETSAKTG----------KGIEELFLSLAKR 160 (162)
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 57899999997 5899999998764
No 208
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.69 E-value=3.8e-16 Score=134.60 Aligned_cols=158 Identities=22% Similarity=0.204 Sum_probs=112.0
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
.++..+|+++|..+||||||+++|....... ...|.......+...+..+.+||.+|+..+
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-------------------~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~ 71 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-------------------TIPTIGFNIEEIKYKGYSLTIWDLGGQESF 71 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-------------------EEEESSEEEEEEEETTEEEEEEEESSSGGG
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-------------------cCcccccccceeeeCcEEEEEEeccccccc
Confidence 3678999999999999999999997431100 012222334455668889999999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCC-CChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADG-PMPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g-~~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
...+...+..+|++|+|||+++. ...+.++.+..+.. .++| ++|++||+|+.+.... + ++...+....+
T Consensus 72 ~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~~~~~-~----~i~~~l~l~~l 145 (175)
T PF00025_consen 72 RPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIP-ILILANKQDLPDAMSE-E----EIKEYLGLEKL 145 (175)
T ss_dssp GGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTTSSTH-H----HHHHHTTGGGT
T ss_pred cccceeeccccceeEEEEecccceeecccccchhhhcchhhcccce-EEEEeccccccCcchh-h----HHHhhhhhhhc
Confidence 98888999999999999999973 23555655544433 2577 5556799998764211 1 23333332223
Q ss_pred C-CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 164 P-GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 164 ~-~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
. ...+.++.+||.+| +|+.+.++||.+.
T Consensus 146 ~~~~~~~v~~~sa~~g----------~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 146 KNKRPWSVFSCSAKTG----------EGVDEGLEWLIEQ 174 (175)
T ss_dssp TSSSCEEEEEEBTTTT----------BTHHHHHHHHHHH
T ss_pred ccCCceEEEeeeccCC----------cCHHHHHHHHHhc
Confidence 2 45678999999998 6999999998764
No 209
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.68 E-value=6.3e-16 Score=131.40 Aligned_cols=154 Identities=21% Similarity=0.176 Sum_probs=98.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeee--eEEeeCCeeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAH--IEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~--~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
+||+++|.+|+|||||+++|+......... +.+.+... ..+......+.+||+||+.+|..
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 63 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYE-----------------PTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccC-----------------CcchhhEEEEEEECCEEEEEEEEECCChhhhhH
Confidence 489999999999999999998542111000 00101111 12222335688999999999999
Q ss_pred HHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHH----HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~----~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
.....++.+|++++|+|..+... ....+.+.... ..++| +++++||+|+.+..... ..+...+.+.++
T Consensus 64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~~~---~~~~~~~~~~~~--- 136 (164)
T cd04139 64 IRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQVS---SEEAANLARQWG--- 136 (164)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEccccccccccC---HHHHHHHHHHhC---
Confidence 88888999999999999876221 11122222222 24678 55568999997621111 112333344333
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.|++++||+++ .++.++++.+.+.+
T Consensus 137 --~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 161 (164)
T cd04139 137 --VPYVETSAKTR----------QNVEKAFYDLVREI 161 (164)
T ss_pred --CeEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999997 68999999987643
No 210
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.68 E-value=6.1e-16 Score=133.17 Aligned_cols=157 Identities=19% Similarity=0.165 Sum_probs=102.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEee-eeEEeeC--CeeEEEEecCChhhhH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA-HIEYETK--ARHYAHVDCPGHADYI 89 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~--~~~~~iiDtpG~~~~~ 89 (396)
+||+++|+.++|||+|+.++....-. .+ ...|+... ...+..+ ...+.||||+|+++|.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~----------------~~--~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~ 63 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP----------------TD--YIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYN 63 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC----------------CC--CCCcceeeeEEEEEECCEEEEEEEEECCCCcccc
Confidence 68999999999999999999853210 00 11222111 1122223 3567899999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhH-HHHHHHHHH--cCCCeEEEEEeccCCCCHHHH-------HHHHHHHHHHHH
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQT-REHILLARQ--VGVPYIVVFLNKADMVDDEEL-------LELVEIEIRELL 158 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt-~e~l~~~~~--~~ip~iIvviNK~D~~~~~~~-------~~~i~~~~~~~l 158 (396)
..+...++.+|++|||+|.++.. +... ..++..+.. -++| +++|.||+|+.+.... .....++...+.
T Consensus 64 ~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a 142 (176)
T cd04133 64 RLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR 142 (176)
T ss_pred ccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH
Confidence 88888889999999999998722 2222 223333332 2566 5567899999653110 001123455555
Q ss_pred hhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 159 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+..+. .+++++||+++ .+++++++.+.+.+
T Consensus 143 ~~~~~----~~~~E~SAk~~----------~nV~~~F~~~~~~~ 172 (176)
T cd04133 143 KQIGA----AAYIECSSKTQ----------QNVKAVFDAAIKVV 172 (176)
T ss_pred HHcCC----CEEEECCCCcc----------cCHHHHHHHHHHHH
Confidence 55543 36999999998 58999999887744
No 211
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.68 E-value=8.9e-16 Score=132.07 Aligned_cols=152 Identities=16% Similarity=0.146 Sum_probs=97.6
Q ss_pred EEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhhHHHH
Q psy15217 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 15 i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~ 92 (396)
|+++|..++|||||++++.+..... .. .... .+.....+..++ ..+.+|||||+++|....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~------------~~----~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 63 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE------------DY----VPTV-FENYSADVEVDGKPVELGLWDTAGQEDYDRLR 63 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC------------CC----CCcE-EeeeeEEEEECCEEEEEEEEECCCCcccchhc
Confidence 5799999999999999998642110 00 0011 111111222233 357899999999998877
Q ss_pred HhhhhcCCEEEEEEecCCCCChhHHHH-----HHHHHH--cCCCeEEEEEeccCCCCHHHHHHH---------HHHHHHH
Q psy15217 93 ITGAAQMDGAILVCSAADGPMPQTREH-----ILLARQ--VGVPYIVVFLNKADMVDDEELLEL---------VEIEIRE 156 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~~~qt~e~-----l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~---------i~~~~~~ 156 (396)
...+..+|++++|+|.++ .++.+. +..+.. .++| ++++.||+|+.+.....+. ..++...
T Consensus 64 ~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 139 (174)
T smart00174 64 PLSYPDTDVFLICFSVDS---PASFENVKEKWYPEVKHFCPNTP-IILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEA 139 (174)
T ss_pred hhhcCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhhCCCCC-EEEEecChhhhhChhhhhhhhcccCCCccHHHHHH
Confidence 777889999999999986 233322 222322 2677 5567899999753221111 1123445
Q ss_pred HHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 157 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
+.+..+. .+++++||+++ .++.++++.+.+.
T Consensus 140 ~~~~~~~----~~~~e~Sa~~~----------~~v~~lf~~l~~~ 170 (174)
T smart00174 140 LAKRIGA----VKYLECSALTQ----------EGVREVFEEAIRA 170 (174)
T ss_pred HHHHcCC----cEEEEecCCCC----------CCHHHHHHHHHHH
Confidence 5555543 47999999997 5899999988764
No 212
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.68 E-value=1.9e-15 Score=132.80 Aligned_cols=154 Identities=19% Similarity=0.105 Sum_probs=92.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhhH-
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYI- 89 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~- 89 (396)
++|+++|..++|||||++++.+..... +....++.+.....+..++ ..+.||||||+.+|.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~----------------~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~ 64 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE----------------EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG 64 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc----------------ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCc
Confidence 489999999999999999998532100 0011111121111222333 467799999976541
Q ss_pred -------HHHHhhhhcCCEEEEEEecCCCCChhHHHHHH----HHH------HcCCCeEEEEEeccCCCCHHHHHHHHHH
Q psy15217 90 -------KNMITGAAQMDGAILVCSAADGPMPQTREHIL----LAR------QVGVPYIVVFLNKADMVDDEELLELVEI 152 (396)
Q Consensus 90 -------~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~----~~~------~~~ip~iIvviNK~D~~~~~~~~~~i~~ 152 (396)
......+..+|++++|+|+++. .+.+++. .+. ..++| ++++.||+|+...... ...
T Consensus 65 ~~~~e~~~~~~~~~~~ad~iilv~D~~~~---~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~Dl~~~~~~---~~~ 137 (198)
T cd04142 65 TAGQEWMDPRFRGLRNSRAFILVYDICSP---DSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKRDQQRHRFA---PRH 137 (198)
T ss_pred cchhHHHHHHHhhhccCCEEEEEEECCCH---HHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECccccccccc---cHH
Confidence 1233446789999999999873 3333322 222 13577 4556799999653111 111
Q ss_pred HHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 153 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
++..+.++. ..++++++||++| .++.+|++.+...+-
T Consensus 138 ~~~~~~~~~----~~~~~~e~Sak~g----------~~v~~lf~~i~~~~~ 174 (198)
T cd04142 138 VLSVLVRKS----WKCGYLECSAKYN----------WHILLLFKELLISAT 174 (198)
T ss_pred HHHHHHHHh----cCCcEEEecCCCC----------CCHHHHHHHHHHHhh
Confidence 233333322 2478999999998 589999988876443
No 213
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.68 E-value=1.2e-15 Score=144.90 Aligned_cols=149 Identities=19% Similarity=0.207 Sum_probs=98.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee-CCeeEEEEecCCh----
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KARHYAHVDCPGH---- 85 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~---- 85 (396)
..++|+++|.+|+|||||+++|++..... .+ ..+.|.+.....+.. ++..+.||||||.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v----------~~------~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l 251 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYA----------AD------QLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL 251 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceee----------cc------CCccccCCEEEEEEeCCCceEEEEecCcccccC
Confidence 45899999999999999999998642100 01 114555555445555 4578999999997
Q ss_pred -----hhhHHHHHhhhhcCCEEEEEEecCCCCCh-hHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHH
Q psy15217 86 -----ADYIKNMITGAAQMDGAILVCSAADGPMP-QTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRE 156 (396)
Q Consensus 86 -----~~~~~~~~~~~~~~d~~llVvda~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~ 156 (396)
+.| +.+...+..+|++++|+|+++.... +.......+..+ +.| +++|+||+|+.+..+. . .
T Consensus 252 ~~~lie~f-~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~p-iIlV~NK~Dl~~~~~v----~----~ 321 (351)
T TIGR03156 252 PHELVAAF-RATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIP-QLLVYNKIDLLDEPRI----E----R 321 (351)
T ss_pred CHHHHHHH-HHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCC-EEEEEEeecCCChHhH----H----H
Confidence 233 2344557789999999999875432 222222334433 567 5557899999764221 1 1
Q ss_pred HHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 157 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
... . ..+++++||+++ .|+++|+++|.+.
T Consensus 322 ~~~--~----~~~~i~iSAktg----------~GI~eL~~~I~~~ 350 (351)
T TIGR03156 322 LEE--G----YPEAVFVSAKTG----------EGLDLLLEAIAER 350 (351)
T ss_pred HHh--C----CCCEEEEEccCC----------CCHHHHHHHHHhh
Confidence 111 1 146899999997 5899999988653
No 214
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.68 E-value=7.3e-16 Score=137.12 Aligned_cols=159 Identities=15% Similarity=0.116 Sum_probs=100.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 92 (396)
++|+++|..++|||||+.+|+...... ...|+.............+.||||||++.|....
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-------------------~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~ 61 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-------------------TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLG 61 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-------------------CCCccceEEEEEEeeEEEEEEEeCCCcccchhhH
Confidence 589999999999999999997542100 0122222222223345678999999999998888
Q ss_pred HhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHH----------------HHHHHHH
Q psy15217 93 ITGAAQMDGAILVCSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKADMVDDEE----------------LLELVEI 152 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~----------------~~~~i~~ 152 (396)
...+..+|++|+|+|+++.. +....+.+..+.. .++| +|+|.||+|+.+... ..+...+
T Consensus 62 ~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~ 140 (220)
T cd04126 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLE 140 (220)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccccccccccccccccccccCCHH
Confidence 88889999999999998722 1112222222222 2466 556789999975100 0111122
Q ss_pred HHHHHHhhcCC---------CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 153 EIRELLNKYEF---------PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 153 ~~~~~l~~~~~---------~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
+...+.+..+- +...++++++||++| .++.++++.+.+.
T Consensus 141 e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg----------~~V~elf~~i~~~ 188 (220)
T cd04126 141 DAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG----------YNVDELFEYLFNL 188 (220)
T ss_pred HHHHHHHHhCccccccccccccccceEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 34445544431 012368999999998 5888888877653
No 215
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.68 E-value=7.5e-16 Score=137.58 Aligned_cols=156 Identities=15% Similarity=0.087 Sum_probs=100.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee--CCeeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET--KARHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~--~~~~~~iiDtpG~~~ 87 (396)
.+.++|+++|..|+|||||+.+++..... .+....+..+.....+.. ....+.+|||||+++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~----------------~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE----------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCC----------------CccCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 56799999999999999999998753211 011111212222223332 335778999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH--cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
|...+....+.+|++|+|+|.++... .....++..+.. .++| ++++.||+|+....... +++ .+.+..
T Consensus 75 ~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~~----~~~-~~~~~~--- 145 (219)
T PLN03071 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA----KQV-TFHRKK--- 145 (219)
T ss_pred hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhhhhccCCH----HHH-HHHHhc---
Confidence 98777777889999999999987322 112222222222 3677 45567999986431111 122 222222
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.++++++||++| .++.+++++|...+
T Consensus 146 --~~~~~e~SAk~~----------~~i~~~f~~l~~~~ 171 (219)
T PLN03071 146 --NLQYYEISAKSN----------YNFEKPFLYLARKL 171 (219)
T ss_pred --CCEEEEcCCCCC----------CCHHHHHHHHHHHH
Confidence 367999999997 58999998887655
No 216
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.68 E-value=4.5e-16 Score=117.85 Aligned_cols=85 Identities=29% Similarity=0.463 Sum_probs=76.7
Q ss_pred ceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEe-cceeecccCCeEEEEe
Q psy15217 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRL-INPIAMEEGLRFAIRE 381 (396)
Q Consensus 303 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~-~~p~~~~~~~r~~lr~ 381 (396)
++++|+|++.||+++ ++|.+||+|++|+++.++.|++..... +++++||.+.|+++| .+|+++++++||+||+
T Consensus 2 ~~~~f~A~i~il~~~-----~~i~~Gy~~~l~~~t~~~~~~i~~i~~-~~l~~g~~~~v~i~f~~~p~~~e~~grf~lr~ 75 (87)
T cd03708 2 ACWEFEAEILVLHHP-----TTISPGYQATVHIGSIRQTARIVSIDK-DVLRTGDRALVRFRFLYHPEYLREGQRLIFRE 75 (87)
T ss_pred ceeEEEEEEEEEcCC-----CcccCCCEeEEEEcCCEEEEEEEeccH-hhccCCCeEEEEEEECCCCcEEccCCeEEEEC
Confidence 478999999999986 589999999999999999999975544 789999999999996 7999999999999988
Q ss_pred CCcEEEEEEEeee
Q psy15217 382 GGRTVGAGVVVKI 394 (396)
Q Consensus 382 ~~~t~~~G~i~~v 394 (396)
+ +|+|+|+|+++
T Consensus 76 g-~tva~G~I~~~ 87 (87)
T cd03708 76 G-RTKGVGEVTKV 87 (87)
T ss_pred C-CcEEEEEEEEC
Confidence 6 99999999875
No 217
>PLN03108 Rab family protein; Provisional
Probab=99.68 E-value=1.5e-15 Score=134.96 Aligned_cols=159 Identities=18% Similarity=0.162 Sum_probs=100.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
..++|+++|+.++|||||+++|+........ ...-+.+.......+......+.+|||||+++|..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~--------------~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~ 70 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCC--------------CCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 4589999999999999999999864211100 00112222222222322234578999999999998
Q ss_pred HHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.+...+..+|++++|+|++... +....+++..+.. .++| ++++.||+|+...... ..++..++++..+
T Consensus 71 ~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~---~~~~~~~~~~~~~---- 142 (210)
T PLN03108 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV---STEEGEQFAKEHG---- 142 (210)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccCC---CHHHHHHHHHHcC----
Confidence 8888888999999999998732 1222222322222 2566 5556799998653111 1123444555443
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .++.++++++...+
T Consensus 143 -~~~~e~Sa~~~----------~~v~e~f~~l~~~~ 167 (210)
T PLN03108 143 -LIFMEASAKTA----------QNVEEAFIKTAAKI 167 (210)
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999997 57888787766543
No 218
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.68 E-value=9.6e-16 Score=133.61 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=99.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeee-eEEee---CCeeEEEEecCChhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAH-IEYET---KARHYAHVDCPGHADY 88 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~-~~~~~---~~~~~~iiDtpG~~~~ 88 (396)
++|+++|..++|||||+++|.+..... + ...|+...+ ..... ....+.+|||||+++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~----------------~--~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~ 62 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPE----------------E--YVPTVFENYVTNIQGPNGKIIELALWDTAGQEEY 62 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC----------------C--CCCeeeeeeEEEEEecCCcEEEEEEEECCCchhH
Confidence 589999999999999999998542110 0 011211111 11222 2346789999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHH-HHHHHHH--cCCCeEEEEEeccCCCCHHHHHH-HHHHHHHHHHhhcCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTRE-HILLARQ--VGVPYIVVFLNKADMVDDEELLE-LVEIEIRELLNKYEF 163 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e-~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~-~i~~~~~~~l~~~~~ 163 (396)
.......+..+|++++|+|.++... ..... ++..... .++| ++++.||+|+.......+ ....+..++.+..+.
T Consensus 63 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~ 141 (187)
T cd04132 63 DRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA 141 (187)
T ss_pred HHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC
Confidence 8888888889999999999987321 11111 2222221 2577 555789999865311000 012234455555543
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||++| .++.++++.+.+.+
T Consensus 142 ----~~~~e~Sa~~~----------~~v~~~f~~l~~~~ 166 (187)
T cd04132 142 ----FAYLECSAKTM----------ENVEEVFDTAIEEA 166 (187)
T ss_pred ----cEEEEccCCCC----------CCHHHHHHHHHHHH
Confidence 37999999997 58888888877654
No 219
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.68 E-value=4.5e-16 Score=132.79 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=97.9
Q ss_pred EEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHHh
Q psy15217 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMIT 94 (396)
Q Consensus 15 i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~ 94 (396)
|+++|..|+|||||+++|.+...... ...|+......+......+.+||+||+++|...+..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~------------------~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLES------------------VVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccc------------------ccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHH
Confidence 78999999999999999985421000 011111122334556778999999999999988888
Q ss_pred hhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH--cCCCeEEEEEeccCCCCHHHHHHHHHHH--HHHHHhhcCCCCCCCe
Q psy15217 95 GAAQMDGAILVCSAADGP-MPQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIE--IRELLNKYEFPGNDIP 169 (396)
Q Consensus 95 ~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~i~~~--~~~~l~~~~~~~~~~~ 169 (396)
.+..+|++++|+|+++.. ....++.+..+.. .++| ++++.||+|+..... .+.+... +..+.+ ....+
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~-----~~~~~ 136 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDLPAARS-VQEIHKELELEPIAR-----GRRWI 136 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCCCC-HHHHHHHhCChhhcC-----CCceE
Confidence 899999999999998732 1223333333322 3677 555789999876421 1111111 122222 13467
Q ss_pred EEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 170 ~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
++++||++.-+.. ..+++.++++.+.+
T Consensus 137 ~~~~Sa~~~~s~~----~~~~v~~~~~~~~~ 163 (164)
T cd04162 137 LQGTSLDDDGSPS----RMEAVKDLLSQLIN 163 (164)
T ss_pred EEEeeecCCCChh----HHHHHHHHHHHHhc
Confidence 8999998721110 11578888877653
No 220
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=1.4e-15 Score=135.01 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=101.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee---CCeeEEEEecCChhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET---KARHYAHVDCPGHADY 88 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~---~~~~~~iiDtpG~~~~ 88 (396)
.+||+++|..++|||||+++|+...... .....++.+.....+.. ....+.+|||||+++|
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~----------------~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~ 65 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAE----------------VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF 65 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH
Confidence 5899999999999999999998542110 00112222332223332 2346789999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH-c--CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ-V--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~-~--~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
.......+..+|++++|+|.++.. +....+++..+.. . ..+.++++.||+|+.+..... .++...+.+.++
T Consensus 66 ~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~---~~~~~~~~~~~~-- 140 (211)
T cd04111 66 RSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVT---REEAEKLAKDLG-- 140 (211)
T ss_pred HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccC---HHHHHHHHHHhC--
Confidence 888888889999999999998721 1122222332222 1 223356667999987632211 122344444433
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .++.+++++|.+.+
T Consensus 141 ---~~~~e~Sak~g----------~~v~e~f~~l~~~~ 165 (211)
T cd04111 141 ---MKYIETSARTG----------DNVEEAFELLTQEI 165 (211)
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 67999999997 58889888887654
No 221
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=1.6e-15 Score=145.78 Aligned_cols=158 Identities=20% Similarity=0.240 Sum_probs=103.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC-eeEEEEecCChhh----
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHAD---- 87 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpG~~~---- 87 (396)
..|+++|.++||||||+++|+....... ...++|.......+...+ ..+.|+||||..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs----------------~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~ 223 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVA----------------DYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE 223 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCccccc----------------CCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc
Confidence 3799999999999999999986532110 012455555555555554 4699999999532
Q ss_pred ---hHHHHHhhhhcCCEEEEEEecCC----CCChhHHHHHHHHHH-----cCCCeEEEEEeccCCCCHHHHHHHHHHHHH
Q psy15217 88 ---YIKNMITGAAQMDGAILVCSAAD----GPMPQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIR 155 (396)
Q Consensus 88 ---~~~~~~~~~~~~d~~llVvda~~----g~~~qt~e~l~~~~~-----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~ 155 (396)
....++..+..+|++++|+|++. ....+....+..+.. .+.|.+ +++||+|+.+.++..+ .+.
T Consensus 224 ~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~I-lVlNKiDl~~~~el~~----~l~ 298 (390)
T PRK12298 224 GAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRW-LVFNKIDLLDEEEAEE----RAK 298 (390)
T ss_pred hhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEE-EEEeCCccCChHHHHH----HHH
Confidence 34456667888999999999872 222322333333333 257755 4679999987543322 233
Q ss_pred HHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 156 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
.+.+.+++ ..+++++||+++ .++.+|++.|.+.++.
T Consensus 299 ~l~~~~~~---~~~Vi~ISA~tg----------~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 299 AIVEALGW---EGPVYLISAASG----------LGVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHHhCC---CCCEEEEECCCC----------cCHHHHHHHHHHHhhh
Confidence 33333332 246999999997 5899999999887753
No 222
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.68 E-value=1.4e-15 Score=129.33 Aligned_cols=153 Identities=17% Similarity=0.145 Sum_probs=98.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~ 90 (396)
++|+++|..++|||||+.+++..... .+....+..+.....+...+ ..+.+|||||+++|..
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 64 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFH----------------SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT 64 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh
Confidence 47999999999999999999753211 01111222222223333333 4578999999999988
Q ss_pred HHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGP-MPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.+......+|++++|+|.++.. +......+..+... ++| ++++.||+|+........ ++...+.+..+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~v~~---~~~~~~~~~~~---- 136 (161)
T cd04117 65 ITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQVGD---EQGNKLAKEYG---- 136 (161)
T ss_pred hHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCCH---HHHHHHHHHcC----
Confidence 8888888999999999998721 12222222222222 456 555679999865421111 12333334332
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
.+++++||+++ .++.+++++|.+
T Consensus 137 -~~~~e~Sa~~~----------~~v~~~f~~l~~ 159 (161)
T cd04117 137 -MDFFETSACTN----------SNIKESFTRLTE 159 (161)
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHh
Confidence 67999999997 589999998865
No 223
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=1.7e-15 Score=142.73 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=102.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee-CCeeEEEEecCChh----
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KARHYAHVDCPGHA---- 86 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~---- 86 (396)
...|+++|.++||||||+++|+........ ..++|.......++. +...++++|+||..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~----------------ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~ 221 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIAD----------------YPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGAS 221 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCC----------------CCCceeCceEEEEEeCCCcEEEEEeCCCccCCCC
Confidence 357899999999999999999864321110 113566555555555 45679999999953
Q ss_pred ---hhHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH-----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy15217 87 ---DYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIREL 157 (396)
Q Consensus 87 ---~~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~-----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~ 157 (396)
.+...+.+.+..+|++++|+|+++.. ..+.......+.. .+.|. ++++||+|+.+..+..+. ....+
T Consensus 222 ~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~-IIV~NKiDL~~~~~~~~~---~~~~~ 297 (335)
T PRK12299 222 EGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPR-ILVLNKIDLLDEEEEREK---RAALE 297 (335)
T ss_pred ccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCe-EEEEECcccCCchhHHHH---HHHHH
Confidence 24445566677899999999998632 2222222233322 25674 456899999865332211 22223
Q ss_pred HhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 158 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 158 l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
++.. ..+++++||+++ .++.+|+++|.+.++
T Consensus 298 ~~~~-----~~~i~~iSAktg----------~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 298 LAAL-----GGPVFLISAVTG----------EGLDELLRALWELLE 328 (335)
T ss_pred HHhc-----CCCEEEEEcCCC----------CCHHHHHHHHHHHHH
Confidence 3322 257999999997 689999999987664
No 224
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.67 E-value=7.9e-16 Score=114.25 Aligned_cols=81 Identities=28% Similarity=0.474 Sum_probs=74.7
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCC
Q psy15217 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERG 292 (396)
Q Consensus 213 ~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G 292 (396)
|||+|+++|+.++.|+.++|+|++|.+++||+++++|.+ ..++|++|+.++.+++.|.|||+|+++|+ +..++++|
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~--~~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G 76 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSG--KTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRG 76 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCC--CeEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCC
Confidence 689999999988888889999999999999999999854 67899999999999999999999999998 46789999
Q ss_pred eEEec
Q psy15217 293 QVLAK 297 (396)
Q Consensus 293 ~vl~~ 297 (396)
++||.
T Consensus 77 ~vl~~ 81 (81)
T cd03695 77 DVIVA 81 (81)
T ss_pred CEEeC
Confidence 99983
No 225
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.67 E-value=1.7e-15 Score=130.43 Aligned_cols=156 Identities=21% Similarity=0.172 Sum_probs=97.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEE---eeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN---TAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~---~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
.+|+++|+.++|||||+.+|.+...... . -.|+. .....+......+.+|||||+++|.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~----------------~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEV----------------Y--VPTVFENYVADIEVDGKQVELALWDTAGQEDYD 63 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC----------------C--CCccccceEEEEEECCEEEEEEEEeCCCchhhh
Confidence 5899999999999999999986421100 0 01111 1112222223457899999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCC-hhHHH-HHHHHHH--cCCCeEEEEEeccCCCCHHHHHHHH---------HHHHHH
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPM-PQTRE-HILLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EIEIRE 156 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~-~qt~e-~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~i---------~~~~~~ 156 (396)
......+..+|++++|+|.++... ....+ .+..+.. .++| ++++.||+|+.+.....+.+ ..+.+.
T Consensus 64 ~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~ 142 (175)
T cd01870 64 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 142 (175)
T ss_pred hccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhcccChhhhhhhhhccCCCccHHHHHH
Confidence 776677789999999999986211 11111 1222222 2677 55578999987542221111 112334
Q ss_pred HHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 157 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
+.+.++. .+++++||++| .++.++++++.+.
T Consensus 143 ~~~~~~~----~~~~~~Sa~~~----------~~v~~lf~~l~~~ 173 (175)
T cd01870 143 MANKIGA----FGYMECSAKTK----------EGVREVFEMATRA 173 (175)
T ss_pred HHHHcCC----cEEEEeccccC----------cCHHHHHHHHHHH
Confidence 4444432 57999999997 5899999998753
No 226
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=1.4e-15 Score=132.75 Aligned_cols=157 Identities=18% Similarity=0.186 Sum_probs=97.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 92 (396)
++|+++|..++|||||+++|+...... .. ....|.+.......+......+.+|||||+++|...+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~------------~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE------------ST--KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC------------CC--CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH
Confidence 589999999999999999998542110 00 0011222222222222233456899999999998888
Q ss_pred HhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15217 93 ITGAAQMDGAILVCSAADGP-MPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 168 (396)
...+..+|++++|+|.++.. +....+++..+... .+| ++++.||+|+.+...... .+...+....+ +
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v~~---~~~~~~~~~~~-----~ 137 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVI-KVIVANKSDLVNNKVVDS---NIAKSFCDSLN-----I 137 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccCCH---HHHHHHHHHcC-----C
Confidence 88889999999999998722 11122223333322 355 666789999874321111 12223333332 4
Q ss_pred eEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 169 ~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+++++||+++ .++.++++++...+
T Consensus 138 ~~~evSa~~~----------~~i~~~f~~l~~~~ 161 (188)
T cd04125 138 PFFETSAKQS----------INVEEAFILLVKLI 161 (188)
T ss_pred eEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 7999999997 57888888776644
No 227
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.67 E-value=1.4e-15 Score=148.50 Aligned_cols=149 Identities=19% Similarity=0.190 Sum_probs=101.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
++.++|+++|++|+|||||+++|++...... ....|+|.+.....+..++..+.+|||||..++.
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aiv---------------s~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~ 265 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIV---------------SDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA 265 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCccc---------------CCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch
Confidence 4568999999999999999999986421110 1123778887777777888899999999975432
Q ss_pred --------HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 90 --------KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 90 --------~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
..+...+..+|++++|+|++++...+.. .+..+...+.| +|+|+||+|+.+. +. ..+.+.+
T Consensus 266 ~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~p-iIlV~NK~Dl~~~-~~--------~~~~~~~ 334 (442)
T TIGR00450 266 DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKP-FILVLNKIDLKIN-SL--------EFFVSSK 334 (442)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCC-EEEEEECccCCCc-ch--------hhhhhhc
Confidence 2234567789999999999886544433 44444445777 5557899999754 11 1122222
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
..|++++||+++ ++.++++.+.+
T Consensus 335 -----~~~~~~vSak~~-----------gI~~~~~~L~~ 357 (442)
T TIGR00450 335 -----VLNSSNLSAKQL-----------KIKALVDLLTQ 357 (442)
T ss_pred -----CCceEEEEEecC-----------CHHHHHHHHHH
Confidence 246899999873 55555555544
No 228
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.67 E-value=1.5e-15 Score=137.76 Aligned_cols=158 Identities=20% Similarity=0.158 Sum_probs=100.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceE-EeeeeEEeeC--CeeEEEEecCChhhhH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITI-NTAHIEYETK--ARHYAHVDCPGHADYI 89 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~-~~~~~~~~~~--~~~~~iiDtpG~~~~~ 89 (396)
++|+++|..++|||||+++++...... ....|+ +.....+..+ ...+.||||+|+++|.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~------------------~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~ 62 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE------------------QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP 62 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC------------------CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhh
Confidence 479999999999999999998542111 001111 1222223333 3567899999999997
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH------------cCCCeEEEEEeccCCCCHHHHHHHHHHHHHH
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ------------VGVPYIVVFLNKADMVDDEELLELVEIEIRE 156 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~------------~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~ 156 (396)
......+..+|++|+|+|.++.. +......+..+.. .++| +|++.||+|+....+. ...++.+
T Consensus 63 ~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~Dl~~~~~v---~~~ei~~ 138 (247)
T cd04143 63 AMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKADRDFPREV---QRDEVEQ 138 (247)
T ss_pred HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECccchhcccc---CHHHHHH
Confidence 76666778999999999998732 1111222222211 2567 5557899999752111 1123444
Q ss_pred HHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCC
Q psy15217 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN 206 (396)
Q Consensus 157 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~ 206 (396)
++... ..++++++||+++ .++++++++|......|.
T Consensus 139 ~~~~~----~~~~~~evSAktg----------~gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 139 LVGGD----ENCAYFEVSAKKN----------SNLDEMFRALFSLAKLPN 174 (247)
T ss_pred HHHhc----CCCEEEEEeCCCC----------CCHHHHHHHHHHHhcccc
Confidence 44321 1367999999997 589999999988655443
No 229
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.66 E-value=9.4e-16 Score=120.89 Aligned_cols=87 Identities=22% Similarity=0.408 Sum_probs=77.3
Q ss_pred ceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEc-------------cCCcccccCCCEEEEEEEeccee
Q psy15217 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIEL-------------PKNKEMVMPGDNVLITVRLINPI 369 (396)
Q Consensus 303 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~-------------~~~~~~l~~g~~~~v~~~~~~p~ 369 (396)
.+++|+|++.|++++ .+|.+||++.+|+++..+.|++.- ..++++|++||.+.|+|++.+|+
T Consensus 2 ~~~~f~A~v~~l~~~-----~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi 76 (107)
T cd04093 2 SSTRFEARILTFNVD-----KPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPI 76 (107)
T ss_pred cccEEEEEEEEECCC-----cccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeE
Confidence 367899999999976 589999999999999999998752 12457899999999999999999
Q ss_pred ecccC------CeEEEEeCCcEEEEEEEeee
Q psy15217 370 AMEEG------LRFAIREGGRTVGAGVVVKI 394 (396)
Q Consensus 370 ~~~~~------~r~~lr~~~~t~~~G~i~~v 394 (396)
|++++ +||+||++|.|+|+|+|++|
T Consensus 77 ~~e~~~~~~~~Grfilr~~~~Tva~G~I~~i 107 (107)
T cd04093 77 PLELFKDNKELGRVVLRRDGETIAAGLVTEI 107 (107)
T ss_pred EEEEcccCCCcceEEEEcCCCEEEEEEEEeC
Confidence 99987 79999999999999999875
No 230
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.66 E-value=2.8e-15 Score=141.22 Aligned_cols=155 Identities=22% Similarity=0.242 Sum_probs=98.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC-eeEEEEecCChh----
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHA---- 86 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpG~~---- 86 (396)
...|+++|.++||||||+++|+........ ....|.......++.++ ..+.|+|+||..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~----------------y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~ 220 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIAD----------------YPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGAS 220 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccC----------------CCCCccCCEEEEEEeCCceEEEEEeCCCcccCCc
Confidence 458999999999999999999864321110 01234443333444455 789999999963
Q ss_pred ---hhHHHHHhhhhcCCEEEEEEecCCC----CChhHHHHHHHHHH-----cCCCeEEEEEeccCCCCHHHHHHHHHHHH
Q psy15217 87 ---DYIKNMITGAAQMDGAILVCSAADG----PMPQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEI 154 (396)
Q Consensus 87 ---~~~~~~~~~~~~~d~~llVvda~~g----~~~qt~e~l~~~~~-----~~ip~iIvviNK~D~~~~~~~~~~i~~~~ 154 (396)
.....+.+.+..+|++++|+|++.. ...+.......+.. .+.|.+ +++||+|+.+... .+.+ .
T Consensus 221 ~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~I-IV~NK~DL~~~~~-~~~~---~ 295 (329)
T TIGR02729 221 EGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRI-VVLNKIDLLDEEE-LAEL---L 295 (329)
T ss_pred ccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEE-EEEeCccCCChHH-HHHH---H
Confidence 2344555666789999999999863 11111111121221 356744 5689999987533 2222 2
Q ss_pred HHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 155 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+.+.+.++ .+++++||+++ .++++|++++.+.+
T Consensus 296 ~~l~~~~~-----~~vi~iSAktg----------~GI~eL~~~I~~~l 328 (329)
T TIGR02729 296 KELKKALG-----KPVFPISALTG----------EGLDELLYALAELL 328 (329)
T ss_pred HHHHHHcC-----CcEEEEEccCC----------cCHHHHHHHHHHHh
Confidence 22323332 47999999997 58999999987654
No 231
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.66 E-value=7.5e-16 Score=132.57 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=97.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEee--eeEEeeCCeeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA--HIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
++++++|..|+|||||+.++...... ... . ....+.. ...++.....+.+|||||+++|..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~------------~~~----~-~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 63 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP------------TEY----V-PTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK 63 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC------------CCC----C-CceeeeeeEEEEECCEEEEEEEEECCCChhhcc
Confidence 58999999999999999998753110 000 0 1111221 122222234678999999999988
Q ss_pred HHHhhhhcCCEEEEEEecCCCCC-hh-HHHHHHHHHH--cCCCeEEEEEeccCCCCHHHHH---------HHHHHHHHHH
Q psy15217 91 NMITGAAQMDGAILVCSAADGPM-PQ-TREHILLARQ--VGVPYIVVFLNKADMVDDEELL---------ELVEIEIREL 157 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~-~q-t~e~l~~~~~--~~ip~iIvviNK~D~~~~~~~~---------~~i~~~~~~~ 157 (396)
.....+..+|++++|+|..+... .. ....+..+.. .++| ++++.||+|+.+..... ....++...+
T Consensus 64 ~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (173)
T cd04130 64 LRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAP-IILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKAL 142 (173)
T ss_pred ccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHH
Confidence 77777889999999999987321 11 1223333333 2567 56678999987532110 0011234455
Q ss_pred HhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhh
Q psy15217 158 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (396)
Q Consensus 158 l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~ 199 (396)
.+..+. .+++++||+++ .++.++++.+.
T Consensus 143 a~~~~~----~~~~e~Sa~~~----------~~v~~lf~~~~ 170 (173)
T cd04130 143 AEKIGA----CEYIECSALTQ----------KNLKEVFDTAI 170 (173)
T ss_pred HHHhCC----CeEEEEeCCCC----------CCHHHHHHHHH
Confidence 554443 47999999997 58999998764
No 232
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.66 E-value=8.1e-15 Score=124.81 Aligned_cols=155 Identities=25% Similarity=0.321 Sum_probs=101.1
Q ss_pred EEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh-------
Q psy15217 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD------- 87 (396)
Q Consensus 15 i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~------- 87 (396)
|+++|+.|+|||||++.|++..... +.+...+.|........ + ..+.++||||+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~--------------~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~ 64 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA--------------RTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEV 64 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee--------------eecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHH
Confidence 7899999999999999998421110 00111234444333322 2 2789999999643
Q ss_pred ---hHHHHHhhh---hcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 88 ---YIKNMITGA---AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 88 ---~~~~~~~~~---~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
+...+...+ ...+.+++++|..........+.+..+...+.| +++++||+|+....+. ......+...++..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~-vi~v~nK~D~~~~~~~-~~~~~~~~~~l~~~ 142 (170)
T cd01876 65 KEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIP-FLVVLTKADKLKKSEL-AKALKEIKKELKLF 142 (170)
T ss_pred HHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCC-EEEEEEchhcCChHHH-HHHHHHHHHHHHhc
Confidence 222222222 356889999999887667777777778888888 4556799999765432 22333445445421
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
. ...+++++|++++ .++.+++++|.++
T Consensus 143 -~--~~~~~~~~Sa~~~----------~~~~~l~~~l~~~ 169 (170)
T cd01876 143 -E--IDPPIILFSSLKG----------QGIDELRALIEKW 169 (170)
T ss_pred -c--CCCceEEEecCCC----------CCHHHHHHHHHHh
Confidence 1 2468999999997 5899999988764
No 233
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.66 E-value=2.7e-15 Score=129.91 Aligned_cols=158 Identities=13% Similarity=0.086 Sum_probs=102.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEee-eeEEeeC--CeeEEEEecCChh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA-HIEYETK--ARHYAHVDCPGHA 86 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~--~~~~~iiDtpG~~ 86 (396)
+..++|+++|+.++|||||+.++....-. . +...|+... ...+..+ ...+.+|||+|.+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~----------------~--~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e 64 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFP----------------E--NYVPTVFENYTASFEIDTQRIELSLWDTSGSP 64 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCC----------------C--ccCCceeeeeEEEEEECCEEEEEEEEECCCch
Confidence 46789999999999999999999854210 0 011222111 1122223 3467899999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCCC-hhH-HHHHHHHHHc--CCCeEEEEEeccCCCCHHH-HH--------HHHHHH
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGPM-PQT-REHILLARQV--GVPYIVVFLNKADMVDDEE-LL--------ELVEIE 153 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~~-~qt-~e~l~~~~~~--~ip~iIvviNK~D~~~~~~-~~--------~~i~~~ 153 (396)
+|.......++.+|++++|+|.++... ... ..++..+... +.| +++|.||+|+.+... .. ....++
T Consensus 65 ~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 65 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEeEChhhhcChhhHHHHHhcCCCCCCHHH
Confidence 998888888899999999999987321 111 1222233322 566 555679999864210 00 011235
Q ss_pred HHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCc-HHHHHHHhhh
Q psy15217 154 IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQS-ILSLSKALDT 200 (396)
Q Consensus 154 ~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~-~~~Ll~~l~~ 200 (396)
..++.+.++. .+++.+||+++ .+ +.++++.+.+
T Consensus 144 ~~~~a~~~~~----~~~~E~SAk~~----------~n~v~~~F~~~~~ 177 (182)
T cd04172 144 GANMAKQIGA----ATYIECSALQS----------ENSVRDIFHVATL 177 (182)
T ss_pred HHHHHHHcCC----CEEEECCcCCC----------CCCHHHHHHHHHH
Confidence 6666666653 58999999998 46 8888887765
No 234
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.66 E-value=1e-15 Score=119.99 Aligned_cols=84 Identities=25% Similarity=0.421 Sum_probs=75.3
Q ss_pred ceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEcc-------------CCcccccCCCEEEEEEEeccee
Q psy15217 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVRLINPI 369 (396)
Q Consensus 303 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~g~~~~v~~~~~~p~ 369 (396)
.+++|+|++.||+++ .+|.+||+|.+|+++.+++|++..+ .++.+|.+||.+.|++++.+|+
T Consensus 2 ~~~~f~A~v~~l~~~-----~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi 76 (104)
T cd03705 2 VAESFTAQVIVLNHP-----GQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPL 76 (104)
T ss_pred cccEEEEEEEEECCC-----CcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCee
Confidence 367899999999985 5899999999999999999998622 2457899999999999999999
Q ss_pred ecccC------CeEEEEeCCcEEEEEEE
Q psy15217 370 AMEEG------LRFAIREGGRTVGAGVV 391 (396)
Q Consensus 370 ~~~~~------~r~~lr~~~~t~~~G~i 391 (396)
+++++ +||+|||+|.|+|+|+|
T Consensus 77 ~~e~~~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 77 VVETFSEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred EEEEcccCCCccCEEEEeCCCEEEEEEC
Confidence 99997 89999999999999986
No 235
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.65 E-value=2.2e-15 Score=129.64 Aligned_cols=149 Identities=22% Similarity=0.225 Sum_probs=93.9
Q ss_pred EEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC-CeeEEEEecCChhhh-------
Q psy15217 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-ARHYAHVDCPGHADY------- 88 (396)
Q Consensus 17 i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~~------- 88 (396)
++|+.|+|||||+++|++.... .....+.|.+.....+..+ +..+.||||||+.+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK----------------VANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc----------------ccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc
Confidence 5899999999999999865210 0011244555444445556 788999999997332
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCC-------ChhHHHHHHHHH----------HcCCCeEEEEEeccCCCCHHHHHHHHH
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGP-------MPQTREHILLAR----------QVGVPYIVVFLNKADMVDDEELLELVE 151 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~-------~~qt~e~l~~~~----------~~~ip~iIvviNK~D~~~~~~~~~~i~ 151 (396)
...+...+..+|++++|+|+.+.. ..+...+...+. ..+.| +++++||+|+.+.....+..
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~- 142 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP-VIYVLNKIDLDDAEELEEEL- 142 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC-eEEEEEchhcCchhHHHHHH-
Confidence 234455677899999999998752 112222222222 13677 45567999998753322211
Q ss_pred HHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 152 IEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
...... . ...+++++||.++ .++.++++.+..
T Consensus 143 --~~~~~~---~--~~~~~~~~Sa~~~----------~gl~~l~~~l~~ 174 (176)
T cd01881 143 --VRELAL---E--EGAEVVPISAKTE----------EGLDELIRAIYE 174 (176)
T ss_pred --HHHHhc---C--CCCCEEEEehhhh----------cCHHHHHHHHHh
Confidence 111111 1 2467999999997 589999998765
No 236
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.65 E-value=3.1e-15 Score=126.53 Aligned_cols=152 Identities=22% Similarity=0.198 Sum_probs=98.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhhhHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~ 91 (396)
||+++|+.|+|||||+++|++..... . .. ..+.+.....+... ...+.+||+||+.+|...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~---~------~~--------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 63 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVE---E------YD--------PTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAM 63 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc---C------cC--------CChhHeEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 58999999999999999998542100 0 00 01111112223333 356789999999999888
Q ss_pred HHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 92 MITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
....+..+|++++|+|..+.. ..+....+..+.. .+.| +++++||+|+...... ..+++..+.+..+
T Consensus 64 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~---- 135 (160)
T cd00876 64 RDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLENERQV---SKEEGKALAKEWG---- 135 (160)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCccccccee---cHHHHHHHHHHcC----
Confidence 888888999999999998632 1222222222222 2566 5567899999763211 1123445555443
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.|++++|++++ .++.+++++|.+.
T Consensus 136 -~~~~~~S~~~~----------~~i~~l~~~l~~~ 159 (160)
T cd00876 136 -CPFIETSAKDN----------INIDEVFKLLVRE 159 (160)
T ss_pred -CcEEEeccCCC----------CCHHHHHHHHHhh
Confidence 57999999997 5899999998754
No 237
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.65 E-value=1.7e-15 Score=131.13 Aligned_cols=154 Identities=21% Similarity=0.173 Sum_probs=97.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~ 90 (396)
.||+++|++|+|||||+++|+........ . ..+.......+..+ ...+.+|||||+++|..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~--------~---------~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 64 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY--------Y---------PTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSI 64 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc--------C---------cchhhhEEEEEEECCEEEEEEEEECCChHhhHH
Confidence 68999999999999999999854211000 0 00000011122222 34578999999999988
Q ss_pred HHHhhhhcCCEEEEEEecCCCCChh-HHHHHH-HHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPMPQ-TREHIL-LARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~~q-t~e~l~-~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
.....+..+|++++|+|.++...-+ ..+.+. ++.. .+.| +|+++||+|+........ .+...+.+.++
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~~---~~~~~~~~~~~--- 137 (180)
T cd04137 65 LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQVST---EEGKELAESWG--- 137 (180)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCccCH---HHHHHHHHHcC---
Confidence 8888888999999999998733211 122212 2222 3567 555789999875321111 12333334332
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||+++ .++.++++++...+
T Consensus 138 --~~~~~~Sa~~~----------~gv~~l~~~l~~~~ 162 (180)
T cd04137 138 --AAFLESSAREN----------ENVEEAFELLIEEI 162 (180)
T ss_pred --CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999997 58888888887654
No 238
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=4.9e-15 Score=132.59 Aligned_cols=169 Identities=15% Similarity=0.084 Sum_probs=105.1
Q ss_pred CCcccccC-CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEee-eeEEeeC--Cee
Q psy15217 1 MAKSKFER-TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA-HIEYETK--ARH 76 (396)
Q Consensus 1 ~~~~~~~~-~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~--~~~ 76 (396)
|.+..... .-..++|+++|..++|||+|+.++....-.. + ...|+... ...+..+ ...
T Consensus 1 ~~~~~~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~----------------~--y~pTi~~~~~~~i~~~~~~v~ 62 (232)
T cd04174 1 MKERRIPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPE----------------T--YVPTVFENYTAGLETEEQRVE 62 (232)
T ss_pred CcccccCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCC----------------C--cCCceeeeeEEEEEECCEEEE
Confidence 44433332 2357899999999999999999997542110 0 01122111 1122223 346
Q ss_pred EEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCC-hhH-HHHHHHHHH--cCCCeEEEEEeccCCCCHHH-H-----
Q psy15217 77 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-PQT-REHILLARQ--VGVPYIVVFLNKADMVDDEE-L----- 146 (396)
Q Consensus 77 ~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~-~qt-~e~l~~~~~--~~ip~iIvviNK~D~~~~~~-~----- 146 (396)
+.||||+|+++|.......+..+|+++||+|.++... ... ..++..+.. -++| +|+|.||+|+.+... .
T Consensus 63 l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~~l~~ 141 (232)
T cd04174 63 LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTR-ILLIGCKTDLRTDLSTLMELSN 141 (232)
T ss_pred EEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccchhhhhcc
Confidence 7899999999998888888899999999999987221 111 222333332 2566 556789999864200 0
Q ss_pred ---HHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 147 ---LELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 147 ---~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.....++..++.+.++. .+++.+||++|. .++.++++.+...
T Consensus 142 ~~~~~Vs~~e~~~~a~~~~~----~~~~EtSAktg~---------~~V~e~F~~~~~~ 186 (232)
T cd04174 142 QKQAPISYEQGCALAKQLGA----EVYLECSAFTSE---------KSIHSIFRSASLL 186 (232)
T ss_pred ccCCcCCHHHHHHHHHHcCC----CEEEEccCCcCC---------cCHHHHHHHHHHH
Confidence 00112356677776664 369999999972 1688888876543
No 239
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=6.8e-15 Score=143.82 Aligned_cols=157 Identities=22% Similarity=0.266 Sum_probs=102.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh---
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD--- 87 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~--- 87 (396)
-...|+++|.++||||||+++|+....... ...++|+......++..+..++|+|+||..+
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIa----------------dypfTTl~P~lGvv~~~~~~f~laDtPGliegas 221 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIA----------------DYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGAS 221 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCcccc----------------ccCcccccceEEEEEECCeEEEEEECCCCccccc
Confidence 345899999999999999999986422110 0125666666666667778899999999421
Q ss_pred ----hHHHHHhhhhcCCEEEEEEecCCC-----CChh---HHHHH-HHH----------HHcCCCeEEEEEeccCCCCHH
Q psy15217 88 ----YIKNMITGAAQMDGAILVCSAADG-----PMPQ---TREHI-LLA----------RQVGVPYIVVFLNKADMVDDE 144 (396)
Q Consensus 88 ----~~~~~~~~~~~~d~~llVvda~~g-----~~~q---t~e~l-~~~----------~~~~ip~iIvviNK~D~~~~~ 144 (396)
.....++.+..+|++++|||++.. ...+ ..+.| .+. ...+.|.+ |++||+|+.+..
T Consensus 222 ~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~I-VVlNKiDL~da~ 300 (500)
T PRK12296 222 EGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRL-VVLNKIDVPDAR 300 (500)
T ss_pred hhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEE-EEEECccchhhH
Confidence 223345556789999999999741 1111 11112 122 12367754 568999997654
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 145 ELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 145 ~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+..+. +...++..+ .+++++||+++ .++.+|+++|.+.+.
T Consensus 301 el~e~----l~~~l~~~g-----~~Vf~ISA~tg----------eGLdEL~~~L~ell~ 340 (500)
T PRK12296 301 ELAEF----VRPELEARG-----WPVFEVSAASR----------EGLRELSFALAELVE 340 (500)
T ss_pred HHHHH----HHHHHHHcC-----CeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 33322 233333332 57999999997 589999998877654
No 240
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.64 E-value=3.1e-15 Score=141.75 Aligned_cols=155 Identities=25% Similarity=0.252 Sum_probs=115.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh--
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD-- 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~-- 87 (396)
+.-++++++|.+|+|||||+|+|++....... | ..|+|.|+-...+..++..+.++||+|-++
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVT---------d------I~GTTRDviee~i~i~G~pv~l~DTAGiRet~ 279 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVT---------D------IAGTTRDVIEEDINLNGIPVRLVDTAGIRETD 279 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEec---------C------CCCCccceEEEEEEECCEEEEEEecCCcccCc
Confidence 35689999999999999999999976444322 2 239999999999999999999999999432
Q ss_pred -h-----HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 88 -Y-----IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 88 -~-----~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
. +.-....+..||.+++|+|+++....+....+. +...+.| +++++||+|+.+.... . .+ +
T Consensus 280 d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~-~i~v~NK~DL~~~~~~-~----~~-----~- 346 (454)
T COG0486 280 DVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKP-IIVVLNKADLVSKIEL-E----SE-----K- 346 (454)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCC-EEEEEechhccccccc-c----hh-----h-
Confidence 2 333445577899999999999976666666655 3344566 5557899999886321 0 01 1
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
.. ...+++.+|++++ +|++.|.++|.+.+..
T Consensus 347 -~~-~~~~~i~iSa~t~----------~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 347 -LA-NGDAIISISAKTG----------EGLDALREAIKQLFGK 377 (454)
T ss_pred -cc-CCCceEEEEecCc----------cCHHHHHHHHHHHHhh
Confidence 11 2347999999997 6899999998886653
No 241
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=3.7e-15 Score=128.75 Aligned_cols=155 Identities=14% Similarity=0.086 Sum_probs=99.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEee-eeEEeeC--CeeEEEEecCChhhhH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA-HIEYETK--ARHYAHVDCPGHADYI 89 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~--~~~~~iiDtpG~~~~~ 89 (396)
++|+++|..++|||||+.++....-. .+ .-.|+... ...+..+ ...+.+|||||+++|.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~----------------~~--~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~ 63 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP----------------ET--YVPTVFENYTASFEIDEQRIELSLWDTSGSPYYD 63 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC----------------CC--cCCceEEEEEEEEEECCEEEEEEEEECCCchhhh
Confidence 68999999999999999999854211 00 01122111 1122233 3457799999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhH-HHHHHHHHHc--CCCeEEEEEeccCCCCHHHHH---------HHHHHHHHH
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQT-REHILLARQV--GVPYIVVFLNKADMVDDEELL---------ELVEIEIRE 156 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt-~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~---------~~i~~~~~~ 156 (396)
......++.+|++++|+|.++.. +... ..++..+... ++| +++|.||+|+.+..... ....++..+
T Consensus 64 ~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~ 142 (178)
T cd04131 64 NVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCA 142 (178)
T ss_pred hcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCC-EEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHH
Confidence 87777888999999999998732 2221 2333333332 566 55567999986421000 011234566
Q ss_pred HHhhcCCCCCCCeEEEecccccccCCCCCCCCC-cHHHHHHHhhh
Q psy15217 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQ-SILSLSKALDT 200 (396)
Q Consensus 157 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~-~~~~Ll~~l~~ 200 (396)
+.+.++. .+++.+||++| . ++.++++.+.+
T Consensus 143 ~a~~~~~----~~~~E~SA~~~----------~~~v~~~F~~~~~ 173 (178)
T cd04131 143 IAKQLGA----EIYLECSAFTS----------EKSVRDIFHVATM 173 (178)
T ss_pred HHHHhCC----CEEEECccCcC----------CcCHHHHHHHHHH
Confidence 6666553 47999999997 4 48888887765
No 242
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.63 E-value=4.3e-15 Score=132.92 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=95.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 92 (396)
++|+++|..|+|||||+++|+...... ... +...+.........+......+.||||||++.+...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~-----------~~~--~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~- 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDD-----------HAY--DASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTED- 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCc-----------cCc--CCCccccceEEEEEECCEEEEEEEEeCCCcchHHHh-
Confidence 489999999999999999997432110 000 000010111122233334567889999999854333
Q ss_pred Hhhhh-cCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 93 ITGAA-QMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 93 ~~~~~-~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.... .+|++++|+|+++.. +....+.+..+.. .++| +|++.||+|+.+..... .++...+...++
T Consensus 67 -~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~~v~---~~~~~~~a~~~~---- 137 (221)
T cd04148 67 -SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP-IILVGNKSDLARSREVS---VQEGRACAVVFD---- 137 (221)
T ss_pred -HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhccccceec---HHHHHHHHHHcC----
Confidence 2344 899999999998732 2222333333333 3577 55567999987542211 112233333332
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+++++||+++ .++.++++++.+.+.
T Consensus 138 -~~~~e~SA~~~----------~gv~~l~~~l~~~~~ 163 (221)
T cd04148 138 -CKFIETSAGLQ----------HNVDELLEGIVRQIR 163 (221)
T ss_pred -CeEEEecCCCC----------CCHHHHHHHHHHHHH
Confidence 57999999997 589999999887653
No 243
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=7.7e-15 Score=141.73 Aligned_cols=152 Identities=21% Similarity=0.237 Sum_probs=98.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC-CeeEEEEecCChhh----
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-ARHYAHVDCPGHAD---- 87 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~---- 87 (396)
..|+++|.++||||||+++|+........ ..++|.......+... +..++++|+||...
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~----------------ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~ 222 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIAN----------------YHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE 222 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCcccc----------------CCcceeceEEEEEEEeCCceEEEEECCCCcccccc
Confidence 38999999999999999999865321110 1145555555555555 67899999999532
Q ss_pred ---hHHHHHhhhhcCCEEEEEEecCCC----CChhHHHHHHHHHH-----cCCCeEEEEEeccCCCCHHHHHHHHHHHHH
Q psy15217 88 ---YIKNMITGAAQMDGAILVCSAADG----PMPQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIR 155 (396)
Q Consensus 88 ---~~~~~~~~~~~~d~~llVvda~~g----~~~qt~e~l~~~~~-----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~ 155 (396)
.....++.+..+|++++|+|++.. ...+.......+.. .+.|.+ ||+||+|+....+ .+.
T Consensus 223 ~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~I-VV~NK~DL~~~~e-------~l~ 294 (424)
T PRK12297 223 GVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQI-VVANKMDLPEAEE-------NLE 294 (424)
T ss_pred cchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEE-EEEeCCCCcCCHH-------HHH
Confidence 234455566779999999999752 11222222222222 367755 4689999854322 122
Q ss_pred HHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 156 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+.+.++ .+++++||+++ .++++|++++.+.+.
T Consensus 295 ~l~~~l~-----~~i~~iSA~tg----------eGI~eL~~~L~~~l~ 327 (424)
T PRK12297 295 EFKEKLG-----PKVFPISALTG----------QGLDELLYAVAELLE 327 (424)
T ss_pred HHHHHhC-----CcEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 3333332 46999999997 689999999887654
No 244
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.63 E-value=1.8e-14 Score=128.35 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=98.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEee-eeEEeeC--CeeEEEEecCChhhhH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA-HIEYETK--ARHYAHVDCPGHADYI 89 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~--~~~~~iiDtpG~~~~~ 89 (396)
++|+++|..++|||||+.+|...... .+. ..|+... ...+..+ ...+.||||+|++.|.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~----------------~~y--~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~ 63 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP----------------GSY--VPTVFENYTASFEIDKRRIELNMWDTSGSSYYD 63 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC----------------Ccc--CCccccceEEEEEECCEEEEEEEEeCCCcHHHH
Confidence 68999999999999999999853210 010 1111111 1223333 3457799999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhHHHHH-----HHHHH--cCCCeEEEEEeccCCCCHHHHHHH---------HHHH
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQTREHI-----LLARQ--VGVPYIVVFLNKADMVDDEELLEL---------VEIE 153 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt~e~l-----~~~~~--~~ip~iIvviNK~D~~~~~~~~~~---------i~~~ 153 (396)
......+..+|++++|+|.++. ++.+.+ ..... -++| +|+|.||+|+.+.....+. ..++
T Consensus 64 ~l~~~~~~~~d~illvfdis~~---~Sf~~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~ 139 (222)
T cd04173 64 NVRPLAYPDSDAVLICFDISRP---ETLDSVLKKWQGETQEFCPNAK-VVLVGCKLDMRTDLATLRELSKQRLIPVTHEQ 139 (222)
T ss_pred HHhHHhccCCCEEEEEEECCCH---HHHHHHHHHHHHHHHhhCCCCC-EEEEEECcccccchhhhhhhhhccCCccCHHH
Confidence 8888888999999999999873 333222 11221 2577 5556799999653111111 1224
Q ss_pred HHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 154 IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 154 ~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
...+.+.++. .+++.+||+++. .++.++++....
T Consensus 140 g~~~ak~~~~----~~y~E~SAk~~~---------~~V~~~F~~~~~ 173 (222)
T cd04173 140 GTVLAKQVGA----VSYVECSSRSSE---------RSVRDVFHVATV 173 (222)
T ss_pred HHHHHHHcCC----CEEEEcCCCcCC---------cCHHHHHHHHHH
Confidence 4555555553 589999999862 248888887655
No 245
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.63 E-value=3.1e-15 Score=127.60 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=92.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh-HHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY-IKNM 92 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-~~~~ 92 (396)
+|+++|+.|+|||||+.+++..... +..+.... +.......+......+.+|||||++++ ...+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~------------~~~~~t~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 65 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI------------GEYDPNLE---SLYSRQVTIDGEQVSLEILDTAGQQQADTEQL 65 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc------------cccCCChH---HhceEEEEECCEEEEEEEEECCCCcccccchH
Confidence 5899999999999999998743110 00000000 011111222222335779999999853 3445
Q ss_pred HhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH-----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 93 ITGAAQMDGAILVCSAADGPM-PQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~-----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
...+..+|++++|+|+++... ......+..+.. .++| ++++.||+|+....... .++...+.+..+
T Consensus 66 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~---- 137 (165)
T cd04146 66 ERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADLLHYRQVS---TEEGEKLASELG---- 137 (165)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhCccC---HHHHHHHHHHcC----
Confidence 567788999999999987421 112222222222 2677 55568999986431111 112334444433
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||+++. .++.++++.+.+.+
T Consensus 138 -~~~~e~Sa~~~~---------~~v~~~f~~l~~~~ 163 (165)
T cd04146 138 -CLFFEVSAAEDY---------DGVHSVFHELCREV 163 (165)
T ss_pred -CEEEEeCCCCCc---------hhHHHHHHHHHHHH
Confidence 579999999862 37899999887643
No 246
>KOG0078|consensus
Probab=99.62 E-value=1.7e-14 Score=122.61 Aligned_cols=154 Identities=19% Similarity=0.119 Sum_probs=106.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCe--eEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~~ 87 (396)
...++|+++|..++|||.++-++......... ...+-++......+.++. .+.+|||+|+++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~----------------~sTiGIDFk~kti~l~g~~i~lQiWDtaGQer 73 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSF----------------ISTIGIDFKIKTIELDGKKIKLQIWDTAGQER 73 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCc----------------cceEEEEEEEEEEEeCCeEEEEEEEEcccchh
Confidence 45789999999999999999998754211100 112334444444555554 457999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHH----H---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLAR----Q---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~----~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
|...+.++++.|++++||+|.+. .++.+++.... . -+++.++ |-||+|+..... .-.+.-+.+..+
T Consensus 74 f~ti~~sYyrgA~gi~LvyDitn---e~Sfeni~~W~~~I~e~a~~~v~~~L-vGNK~D~~~~R~---V~~e~ge~lA~e 146 (207)
T KOG0078|consen 74 FRTITTAYYRGAMGILLVYDITN---EKSFENIRNWIKNIDEHASDDVVKIL-VGNKCDLEEKRQ---VSKERGEALARE 146 (207)
T ss_pred HHHHHHHHHhhcCeeEEEEEccc---hHHHHHHHHHHHHHHhhCCCCCcEEE-eecccccccccc---ccHHHHHHHHHH
Confidence 99999999999999999999987 44544443332 2 2677555 579999977421 122345666677
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
+| ++|+++||++|. ++++.+-.|.+.
T Consensus 147 ~G-----~~F~EtSAk~~~----------NI~eaF~~La~~ 172 (207)
T KOG0078|consen 147 YG-----IKFFETSAKTNF----------NIEEAFLSLARD 172 (207)
T ss_pred hC-----CeEEEccccCCC----------CHHHHHHHHHHH
Confidence 66 579999999984 666666655543
No 247
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.62 E-value=4.9e-15 Score=120.44 Aligned_cols=136 Identities=23% Similarity=0.274 Sum_probs=95.3
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC----hhhhH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG----HADYI 89 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG----~~~~~ 89 (396)
+|.++|.+++|||||+.+|.+... ....|..+. | .+ .+||||| +..|-
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--------------------~~~KTq~i~---~--~~---~~IDTPGEyiE~~~~y 54 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--------------------RYKKTQAIE---Y--YD---NTIDTPGEYIENPRFY 54 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--------------------CcCccceeE---e--cc---cEEECChhheeCHHHH
Confidence 789999999999999999976321 112222221 1 11 4599999 56667
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 169 (396)
+..+..+..||.+++|.||++... ..--.++..++.| +|=||||+|+.+.++..+ ..+++|+..|.. .
T Consensus 55 ~aLi~ta~dad~V~ll~dat~~~~---~~pP~fa~~f~~p-vIGVITK~Dl~~~~~~i~----~a~~~L~~aG~~----~ 122 (143)
T PF10662_consen 55 HALIVTAQDADVVLLLQDATEPRS---VFPPGFASMFNKP-VIGVITKIDLPSDDANIE----RAKKWLKNAGVK----E 122 (143)
T ss_pred HHHHHHHhhCCEEEEEecCCCCCc---cCCchhhcccCCC-EEEEEECccCccchhhHH----HHHHHHHHcCCC----C
Confidence 777777789999999999997322 1112345566778 555689999994322222 456778877872 4
Q ss_pred EEEecccccccCCCCCCCCCcHHHHHHHhh
Q psy15217 170 IIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (396)
Q Consensus 170 ~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~ 199 (396)
++++|+.++ +|+++|.++|.
T Consensus 123 if~vS~~~~----------eGi~eL~~~L~ 142 (143)
T PF10662_consen 123 IFEVSAVTG----------EGIEELKDYLE 142 (143)
T ss_pred eEEEECCCC----------cCHHHHHHHHh
Confidence 699999997 69999999875
No 248
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.62 E-value=4.7e-15 Score=115.92 Aligned_cols=84 Identities=39% Similarity=0.709 Sum_probs=75.7
Q ss_pred ceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEccC-----------CcccccCCCEEEEEEEecceeec
Q psy15217 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPK-----------NKEMVMPGDNVLITVRLINPIAM 371 (396)
Q Consensus 303 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~l~~g~~~~v~~~~~~p~~~ 371 (396)
++++|+|++.+++++ .+|.+||++.+|+++.++.|++..+. +++.+++||.+.|+|++.+|+|+
T Consensus 2 ~~~~f~a~i~~l~~~-----~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~~~~~~~~~l~~~~~a~v~l~~~~pi~~ 76 (102)
T cd01513 2 AVDKFVAEIYVLDHP-----EPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKTEEKKPPEFLKSGERGIVEVELQKPVAL 76 (102)
T ss_pred cccEEEEEEEEECCC-----cccCCCCcEEEEeecCEEeEEEEeeeeecccCcccccCchhhcCCCEEEEEEEECCceEE
Confidence 467899999999986 58999999999999999999986543 46789999999999999999999
Q ss_pred c------cCCeEEEEeCCcEEEEEEE
Q psy15217 372 E------EGLRFAIREGGRTVGAGVV 391 (396)
Q Consensus 372 ~------~~~r~~lr~~~~t~~~G~i 391 (396)
+ .++||+||++++|+|+|.|
T Consensus 77 e~~~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 77 ETFSENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred EEhhhCCCcccEEEEeCCCEEEEEEC
Confidence 9 7799999999999999986
No 249
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.61 E-value=1.3e-14 Score=127.39 Aligned_cols=146 Identities=18% Similarity=0.077 Sum_probs=95.3
Q ss_pred EeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceE--EeeeeEEee--CCeeEEEEecCChhhhHHHHH
Q psy15217 18 IGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITI--NTAHIEYET--KARHYAHVDCPGHADYIKNMI 93 (396)
Q Consensus 18 ~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~--~~~~~~~~~--~~~~~~iiDtpG~~~~~~~~~ 93 (396)
+|+.++|||||+.+++.... .. .+..|+ +.....+.. ....+.||||||+++|...+.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f----------------~~--~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~ 62 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF----------------EK--KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRD 62 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC----------------CC--CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhH
Confidence 59999999999999974311 00 112233 222233333 345678999999999998888
Q ss_pred hhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH--cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15217 94 TGAAQMDGAILVCSAADGPM-PQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 170 (396)
Q Consensus 94 ~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~ 170 (396)
..++.+|++++|+|.+.... ......+..+.. -++| ++++.||+|+....... +.+ .+.+.. .+++
T Consensus 63 ~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~~----~~~-~~~~~~-----~~~~ 131 (200)
T smart00176 63 GYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDVKDRKVKA----KSI-TFHRKK-----NLQY 131 (200)
T ss_pred HHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccCCH----HHH-HHHHHc-----CCEE
Confidence 88999999999999998432 222233333333 3677 55567999985421111 111 223322 3689
Q ss_pred EEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 171 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 171 i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+++||+++ .++.++++++...+
T Consensus 132 ~e~SAk~~----------~~v~~~F~~l~~~i 153 (200)
T smart00176 132 YDISAKSN----------YNFEKPFLWLARKL 153 (200)
T ss_pred EEEeCCCC----------CCHHHHHHHHHHHH
Confidence 99999998 58999999987655
No 250
>KOG0098|consensus
Probab=99.61 E-value=1.4e-14 Score=119.88 Aligned_cols=155 Identities=16% Similarity=0.104 Sum_probs=109.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCe--eEEEEecCChhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHADY 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~~~ 88 (396)
..+++.++|+.|+|||.|+-+++...-.. .+ ...+.++.....+..+++ .+.+|||+||+.|
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~--------------~h--d~TiGvefg~r~~~id~k~IKlqiwDtaGqe~f 68 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQP--------------VH--DLTIGVEFGARMVTIDGKQIKLQIWDTAGQESF 68 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccc--------------cc--cceeeeeeceeEEEEcCceEEEEEEecCCcHHH
Confidence 56899999999999999999998642111 01 112333444445555555 4679999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCC-CCChhHHHHHHHHHHcCCCe--EEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPY--IVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~-g~~~qt~e~l~~~~~~~ip~--iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
...+.++.+.+.++|||.|.+. ..+.....||.-+++.+-+. |+++-||+|+....+ .-++|-+.+.++.++
T Consensus 69 rsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~---Vs~EEGeaFA~ehgL-- 143 (216)
T KOG0098|consen 69 RSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARRE---VSKEEGEAFAREHGL-- 143 (216)
T ss_pred HHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcccc---ccHHHHHHHHHHcCc--
Confidence 9999999999999999999987 23344444555555553332 444569999976532 234578888888876
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhh
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~ 199 (396)
++..+||+++ .++++.+.-..
T Consensus 144 ---ifmETSakt~----------~~VEEaF~nta 164 (216)
T KOG0098|consen 144 ---IFMETSAKTA----------ENVEEAFINTA 164 (216)
T ss_pred ---eeehhhhhhh----------hhHHHHHHHHH
Confidence 5889999997 46766665443
No 251
>PRK11058 GTPase HflX; Provisional
Probab=99.61 E-value=1.2e-14 Score=141.24 Aligned_cols=152 Identities=20% Similarity=0.159 Sum_probs=96.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC-eeEEEEecCChhhh---
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHADY--- 88 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpG~~~~--- 88 (396)
.+|+++|.+|+|||||+++|++..... ....+.|.+.....+...+ ..+.+|||||..+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v----------------~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~ 261 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYA----------------ADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPH 261 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceee----------------ccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCH
Confidence 589999999999999999998642110 0111455555444444444 37899999997331
Q ss_pred -----HHHHHhhhhcCCEEEEEEecCCCCChhH----HHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q psy15217 89 -----IKNMITGAAQMDGAILVCSAADGPMPQT----REHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (396)
Q Consensus 89 -----~~~~~~~~~~~d~~llVvda~~g~~~qt----~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~ 159 (396)
+..+...+..+|++++|+|+++...... .+.+..+...++| +++|+||+|+.+.... .+. . .
T Consensus 262 ~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p-vIiV~NKiDL~~~~~~--~~~--~----~ 332 (426)
T PRK11058 262 DLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP-TLLVMNKIDMLDDFEP--RID--R----D 332 (426)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC-EEEEEEcccCCCchhH--HHH--H----H
Confidence 2234556778999999999988543222 1223333333677 4556899999753111 111 1 1
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
..+. ..++++||++| .|+++|++++...+.
T Consensus 333 ~~~~----~~~v~ISAktG----------~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 333 EENK----PIRVWLSAQTG----------AGIPLLFQALTERLS 362 (426)
T ss_pred hcCC----CceEEEeCCCC----------CCHHHHHHHHHHHhh
Confidence 1122 12588999997 589999999988764
No 252
>KOG0394|consensus
Probab=99.60 E-value=1.8e-14 Score=118.98 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=105.7
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEE--eeeeEEeeCCee--EEEEecC
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN--TAHIEYETKARH--YAHVDCP 83 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~--~~~~~~~~~~~~--~~iiDtp 83 (396)
..+..++|.++|..|+|||+|++++....-.. ....||. .-...+..+++. +.+|||+
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~------------------qykaTIgadFltKev~Vd~~~vtlQiWDTA 66 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQ------------------QYKATIGADFLTKEVQVDDRSVTLQIWDTA 66 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHH------------------HhccccchhheeeEEEEcCeEEEEEEEecc
Confidence 44567999999999999999999998653322 1122332 222333344544 4599999
Q ss_pred ChhhhHHHHHhhhhcCCEEEEEEecCCCC-----ChhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHH
Q psy15217 84 GHADYIKNMITGAAQMDGAILVCSAADGP-----MPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIR 155 (396)
Q Consensus 84 G~~~~~~~~~~~~~~~d~~llVvda~~g~-----~~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~ 155 (396)
|+++|.+.-....+.+|.++||.|.+... ...-.|.+..+.-. .-| +||+-||+|...-+.+... .....
T Consensus 67 GQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FP-FVilGNKiD~~~~~~r~VS-~~~Aq 144 (210)
T KOG0394|consen 67 GQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFP-FVILGNKIDVDGGKSRQVS-EKKAQ 144 (210)
T ss_pred cHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCccc-EEEEcccccCCCCccceee-HHHHH
Confidence 99999999988899999999999988721 12223344443322 356 4556799999763222221 22455
Q ss_pred HHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 156 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
..++..+ ++|++.+||+.+ .++.+.++.+..
T Consensus 145 ~WC~s~g----nipyfEtSAK~~----------~NV~~AFe~ia~ 175 (210)
T KOG0394|consen 145 TWCKSKG----NIPYFETSAKEA----------TNVDEAFEEIAR 175 (210)
T ss_pred HHHHhcC----CceeEEeccccc----------ccHHHHHHHHHH
Confidence 6666554 689999999987 467776666554
No 253
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.3e-14 Score=143.28 Aligned_cols=151 Identities=23% Similarity=0.298 Sum_probs=110.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh---
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY--- 88 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--- 88 (396)
..+|+++|++|+|||||.|+|++.....++.. |+|++-....++..++.+.++|.||-..+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwp----------------GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~ 66 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWP----------------GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAY 66 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCC----------------CeeEEEEEEEEEecCceEEEEeCCCcCCCCCC
Confidence 35699999999999999999998755544332 89999999999999999999999993222
Q ss_pred ---HHHHHhhh--hcCCEEEEEEecCCCCChhHHHHHHH---HHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 89 ---IKNMITGA--AQMDGAILVCSAADGPMPQTREHILL---ARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 89 ---~~~~~~~~--~~~d~~llVvda~~g~~~qt~e~l~~---~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
-+-....+ ..+|+++-|+||++ .+.++++ +..+|+| +|+++|++|..... -+.-+.+++-+.
T Consensus 67 S~DE~Var~~ll~~~~D~ivnVvDAtn-----LeRnLyltlQLlE~g~p-~ilaLNm~D~A~~~----Gi~ID~~~L~~~ 136 (653)
T COG0370 67 SEDEKVARDFLLEGKPDLIVNVVDATN-----LERNLYLTLQLLELGIP-MILALNMIDEAKKR----GIRIDIEKLSKL 136 (653)
T ss_pred CchHHHHHHHHhcCCCCEEEEEcccch-----HHHHHHHHHHHHHcCCC-eEEEeccHhhHHhc----CCcccHHHHHHH
Confidence 11112222 25799999999975 4444444 4456999 66789999976542 122234444455
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+| +|++++||.+| .|++++++.+.+..+
T Consensus 137 LG-----vPVv~tvA~~g----------~G~~~l~~~i~~~~~ 164 (653)
T COG0370 137 LG-----VPVVPTVAKRG----------EGLEELKRAIIELAE 164 (653)
T ss_pred hC-----CCEEEEEeecC----------CCHHHHHHHHHHhcc
Confidence 55 68999999997 689999999887543
No 254
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.59 E-value=1.6e-14 Score=120.15 Aligned_cols=148 Identities=22% Similarity=0.214 Sum_probs=95.5
Q ss_pred EEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCce-EEeeeeEEee--CCeeEEEEecCChhhhHHHHH
Q psy15217 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGIT-INTAHIEYET--KARHYAHVDCPGHADYIKNMI 93 (396)
Q Consensus 17 i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t-~~~~~~~~~~--~~~~~~iiDtpG~~~~~~~~~ 93 (396)
++|+.++|||||+++|++..... .....| .+.....+.. ....+.+||+||+..+...+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 63 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-----------------EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRR 63 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-----------------cccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHH
Confidence 57999999999999998653210 011111 2222222222 356789999999999988888
Q ss_pred hhhhcCCEEEEEEecCCCCChhHHHH-----HHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15217 94 TGAAQMDGAILVCSAADGPMPQTREH-----ILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (396)
Q Consensus 94 ~~~~~~d~~llVvda~~g~~~qt~e~-----l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 168 (396)
.....+|++++|+|++.+...+.... +......+.| +++++||+|+.......... ........ ...
T Consensus 64 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~~~~~~~---~~~~~~~~----~~~ 135 (157)
T cd00882 64 LYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIP-IILVGNKIDLPEERVVSEEE---LAEQLAKE----LGV 135 (157)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCc-EEEEEeccccccccchHHHH---HHHHHHhh----cCC
Confidence 88889999999999998544333332 2233344677 55578999998753321111 01111111 247
Q ss_pred eEEEecccccccCCCCCCCCCcHHHHHHHhh
Q psy15217 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (396)
Q Consensus 169 ~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~ 199 (396)
+++++|+..+ .++.+++++|.
T Consensus 136 ~~~~~s~~~~----------~~i~~~~~~l~ 156 (157)
T cd00882 136 PYFETSAKTG----------ENVEELFEELA 156 (157)
T ss_pred cEEEEecCCC----------CChHHHHHHHh
Confidence 8999999987 57888888764
No 255
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.59 E-value=8.8e-15 Score=148.03 Aligned_cols=146 Identities=21% Similarity=0.256 Sum_probs=100.9
Q ss_pred eCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHH------H
Q psy15217 19 GHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN------M 92 (396)
Q Consensus 19 G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~------~ 92 (396)
|++|+|||||+++|++..... ....|+|++.....++.++..+.+|||||+.++... .
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v----------------~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTV----------------GNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCee----------------cCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHH
Confidence 889999999999998642111 113488888877777778888999999998876432 1
Q ss_pred Hhh--hhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15217 93 ITG--AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 170 (396)
Q Consensus 93 ~~~--~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~ 170 (396)
... ...+|++++|+|+++. ....+....+...++| +++++||+|+.+..... .+.+.+.+.++ +|+
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~~i~----~d~~~L~~~lg-----~pv 132 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIP-MILALNLVDEAEKKGIR----IDEEKLEERLG-----VPV 132 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCC-EEEEEehhHHHHhCCCh----hhHHHHHHHcC-----CCE
Confidence 111 2368999999999873 2233334445567888 45568999986432211 12333444443 589
Q ss_pred EEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 171 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 171 i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+++||++| .|++++++++.+..
T Consensus 133 v~tSA~tg----------~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 133 VPTSATEG----------RGIERLKDAIRKAI 154 (591)
T ss_pred EEEECCCC----------CCHHHHHHHHHHHh
Confidence 99999997 68999999987643
No 256
>KOG0095|consensus
Probab=99.58 E-value=5.7e-14 Score=111.66 Aligned_cols=156 Identities=22% Similarity=0.189 Sum_probs=106.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEee----eeEEeeCCeeEEEEecCCh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA----HIEYETKARHYAHVDCPGH 85 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~----~~~~~~~~~~~~iiDtpG~ 85 (396)
+-.++|+++|+.|+|||.|+.++++..-..+ .|.|+.+. ....+.+...+.||||+|+
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppg------------------qgatigvdfmiktvev~gekiklqiwdtagq 66 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPG------------------QGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ 66 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCC------------------CCceeeeeEEEEEEEECCeEEEEEEeeccch
Confidence 4568999999999999999999997643322 24444332 3334445567789999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHH---HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLAR---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~---~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
++|..-+.++.+.|++.+||.|.+..+ +.-.-|++..+. ...+-.++ |-||+|+.+..+.-+.+-+++.+.-
T Consensus 67 erfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkil-vgnk~d~~drrevp~qigeefs~~q--- 142 (213)
T KOG0095|consen 67 ERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKIL-VGNKIDLADRREVPQQIGEEFSEAQ--- 142 (213)
T ss_pred HHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEe-eccccchhhhhhhhHHHHHHHHHhh---
Confidence 999999999999999999999988633 222222332222 22333344 5799999887555555555444431
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
..-|+..||+.. ++++.|+..+...+
T Consensus 143 -----dmyfletsakea----------~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 143 -----DMYFLETSAKEA----------DNVEKLFLDLACRL 168 (213)
T ss_pred -----hhhhhhhcccch----------hhHHHHHHHHHHHH
Confidence 123788999986 57778777665444
No 257
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.58 E-value=3.5e-14 Score=120.54 Aligned_cols=151 Identities=19% Similarity=0.181 Sum_probs=100.2
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhhhHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~ 91 (396)
||+++|+.++|||||+.+|.+..... +.......+.....+..+ ...+.+||++|+++|...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 64 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE----------------NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSL 64 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS----------------SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc----------------cccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999998642110 001111123333333333 345789999999999887
Q ss_pred HHhhhhcCCEEEEEEecCCCCChhHHHHH----HHHHHc-C-CCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 92 MITGAAQMDGAILVCSAADGPMPQTREHI----LLARQV-G-VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g~~~qt~e~l----~~~~~~-~-ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
.......+|++++|.|.++ .++.+++ ..+... . -+.++|+.||.|+.+.... ..++...+.+.++
T Consensus 65 ~~~~~~~~~~~ii~fd~~~---~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v---~~~~~~~~~~~~~--- 135 (162)
T PF00071_consen 65 RDIFYRNSDAIIIVFDVTD---EESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREV---SVEEAQEFAKELG--- 135 (162)
T ss_dssp HHHHHTTESEEEEEEETTB---HHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSS---CHHHHHHHHHHTT---
T ss_pred ccccccccccccccccccc---cccccccccccccccccccccccceeeeccccccccccc---hhhHHHHHHHHhC---
Confidence 7777889999999999987 3333333 333322 2 2346777899998763211 1124555666554
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.+++.+|++++ .++.+++..+.+.
T Consensus 136 --~~~~e~Sa~~~----------~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 136 --VPYFEVSAKNG----------ENVKEIFQELIRK 159 (162)
T ss_dssp --SEEEEEBTTTT----------TTHHHHHHHHHHH
T ss_pred --CEEEEEECCCC----------CCHHHHHHHHHHH
Confidence 68999999987 5888888877653
No 258
>KOG1423|consensus
Probab=99.57 E-value=1.1e-13 Score=123.35 Aligned_cols=172 Identities=21% Similarity=0.236 Sum_probs=105.1
Q ss_pred cCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC--
Q psy15217 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG-- 84 (396)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG-- 84 (396)
.++...++|+++|.+|+|||||.|.+++........ .-.+|.......+..+...+.|+||||
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~---------------K~~TTr~~ilgi~ts~eTQlvf~DTPGlv 131 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSR---------------KVHTTRHRILGIITSGETQLVFYDTPGLV 131 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccc---------------cccceeeeeeEEEecCceEEEEecCCccc
Confidence 345668999999999999999999998754322111 113444444556667788999999999
Q ss_pred ----hhhh------HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHH-cCCCeEEEEEeccCCCCHHHHHHHHH--
Q psy15217 85 ----HADY------IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ-VGVPYIVVFLNKADMVDDEELLELVE-- 151 (396)
Q Consensus 85 ----~~~~------~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~-~~ip~iIvviNK~D~~~~~~~~~~i~-- 151 (396)
|..+ ..+-..++..||.+++|+|+.+.-....-..|..+.. ..+|-++ ++||+|........-..+
T Consensus 132 s~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~l-vmnkid~~k~k~~Ll~l~~~ 210 (379)
T KOG1423|consen 132 SKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSIL-VMNKIDKLKQKRLLLNLKDL 210 (379)
T ss_pred ccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCcee-eccchhcchhhhHHhhhHHh
Confidence 2222 2234455668999999999995222111222222222 3678665 589999876532211111
Q ss_pred ----------HHHHHHHhhcC---CC----CC--CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 152 ----------IEIRELLNKYE---FP----GN--DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 152 ----------~~~~~~l~~~~---~~----~~--~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
.++.+-+.... .+ ++ --.+|++||+.| +|+.+|-++|..+.|+
T Consensus 211 Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G----------~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 211 LTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYG----------EGIKDLKQYLMSQAPP 272 (379)
T ss_pred ccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccc----------cCHHHHHHHHHhcCCC
Confidence 11111111111 00 01 224899999998 6899999998876653
No 259
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.57 E-value=4.5e-14 Score=108.97 Aligned_cols=95 Identities=31% Similarity=0.525 Sum_probs=85.6
Q ss_pred CeEEecCCCCCceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeec
Q psy15217 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAM 371 (396)
Q Consensus 292 G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~ 371 (396)
|++++.++...+++.|.+++.++... ..+++.++++.+|+|+.++.|++.+.+ .+.+.+|+.+.++++|++|+++
T Consensus 1 G~vl~~~~~~~~~~~~~~~i~~l~~~----~~~l~~~~~v~~~~Gt~~v~~ri~ll~-~~~~~pg~~~~a~l~l~~pl~~ 75 (97)
T cd04094 1 GDVLADPGSLLPTRRLDVRLTVLLSA----PRPLKHRQRVHLHHGTSEVLARVVLLD-RDELAPGEEALAQLRLEEPLVA 75 (97)
T ss_pred CCEEecCCCcCCceEEEEEEEEECCC----CccCCCCCeEEEEeccceEEEEEEeCC-ccccCCCCEEEEEEEECCcEee
Confidence 78999988777789999999988764 258999999999999999999998655 5678999999999999999999
Q ss_pred ccCCeEEEEeCC--cEEEEEEE
Q psy15217 372 EEGLRFAIREGG--RTVGAGVV 391 (396)
Q Consensus 372 ~~~~r~~lr~~~--~t~~~G~i 391 (396)
+.|+||+||+.+ +|+|.|+|
T Consensus 76 ~~gdrfilR~~~~~~tiggG~V 97 (97)
T cd04094 76 LRGDRFILRSYSPLRTLGGGRV 97 (97)
T ss_pred cCCCeEEEeeCCCCeEEEeEEC
Confidence 999999999988 99999985
No 260
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.57 E-value=9.9e-14 Score=121.88 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=102.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee-CCeeEEEEecCCh-----
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KARHYAHVDCPGH----- 85 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~----- 85 (396)
+++|+++|.+|+|||||+++|++...... +.. ..+. ...|.... .+.. ....+.+|||||.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~-~~~----~~~~------~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~ 67 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEE-GAA----PTGV------VETTMKRT--PYPHPKFPNVTLWDLPGIGSTAF 67 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCC-Ccc----ccCc------cccccCce--eeecCCCCCceEEeCCCCCcccC
Confidence 47899999999999999999987421110 000 0000 01121111 1211 1346899999996
Q ss_pred --hhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH------------HHHHHHHH
Q psy15217 86 --ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD------------EELLELVE 151 (396)
Q Consensus 86 --~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~------------~~~~~~i~ 151 (396)
+.|+.. .++..+|.+++|.| ..........+..+...+.|. ++|.||+|+..+ ++..+.+.
T Consensus 68 ~~~~~l~~--~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~-ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~ 142 (197)
T cd04104 68 PPDDYLEE--MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKF-YFVRTKVDRDLSNEQRSKPRSFNREQVLQEIR 142 (197)
T ss_pred CHHHHHHH--hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCE-EEEEecccchhhhhhccccccccHHHHHHHHH
Confidence 344433 23567888888754 345566667777777788884 557899998543 12344444
Q ss_pred HHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCC
Q psy15217 152 IEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN 206 (396)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~ 206 (396)
+.+...++..+. ...+++.+|+.... +.++..|.+++...+|...
T Consensus 143 ~~~~~~~~~~~~--~~p~v~~vS~~~~~--------~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 143 DNCLENLQEAGV--SEPPVFLVSNFDPS--------DYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred HHHHHHHHHcCC--CCCCEEEEeCCChh--------hcChHHHHHHHHHHhhHHH
Confidence 455555554443 34689999998410 1368889999888777543
No 261
>KOG0073|consensus
Probab=99.57 E-value=8.3e-14 Score=112.82 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=108.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
...++|.++|..||||||++++|.+...+.. ..|........+.++..+++||..|+..+.
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i-------------------~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr 74 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDTI-------------------SPTLGFQIKTLEYKGYTLNIWDVGGQKTLR 74 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCcccc-------------------CCccceeeEEEEecceEEEEEEcCCcchhH
Confidence 3489999999999999999999987542221 123333344566788999999999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHH----HHcCCCeEEEEEeccCCCCHHHHHHHHH--HHHHHHHhhcC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLA----RQVGVPYIVVFLNKADMVDDEELLELVE--IEIRELLNKYE 162 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~----~~~~ip~iIvviNK~D~~~~~~~~~~i~--~~~~~~l~~~~ 162 (396)
+-+..++..+|+.|+|+|..+.. +.+++.++..+ +..|.|.++ +.||.|+.+.-. .+.+. .++..+++..
T Consensus 75 ~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lv-lank~dl~~~l~-~~~i~~~~~L~~l~ks~- 151 (185)
T KOG0073|consen 75 SYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLV-LANKQDLPGALS-LEEISKALDLEELAKSH- 151 (185)
T ss_pred HHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEE-EEecCcCccccC-HHHHHHhhCHHHhcccc-
Confidence 99999999999999999997732 23344443332 334778555 569999985411 11121 2455554433
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.++++-+||.+| +++.+-++++...
T Consensus 152 ----~~~l~~cs~~tg----------e~l~~gidWL~~~ 176 (185)
T KOG0073|consen 152 ----HWRLVKCSAVTG----------EDLLEGIDWLCDD 176 (185)
T ss_pred ----CceEEEEecccc----------ccHHHHHHHHHHH
Confidence 578999999998 4666666666543
No 262
>KOG0080|consensus
Probab=99.56 E-value=6.1e-14 Score=112.97 Aligned_cols=146 Identities=16% Similarity=0.112 Sum_probs=95.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
...++|.++|..|+|||+|+-+++....+. . +...-|+...+...........+.||||+|+++|.
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~-------------~-~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFR 74 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDD-------------L-HPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFR 74 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCc-------------c-CCceeeeeEEEEEEEEcCceEEEEEEeccchHhhh
Confidence 346899999999999999999987542211 1 11112333344444555556678899999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
..+.++.+.|.++|+|.|.+... +.....++..+.. .++-.++ |-||+|..+. + ..-.++-.++.+++.
T Consensus 75 tLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikml-VgNKiDkes~-R--~V~reEG~kfAr~h~-- 148 (209)
T KOG0080|consen 75 TLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKML-VGNKIDKESE-R--VVDREEGLKFARKHR-- 148 (209)
T ss_pred ccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhh-hcccccchhc-c--cccHHHHHHHHHhhC--
Confidence 99999999999999999998732 1222112222222 2444455 4699997542 1 111234556666654
Q ss_pred CCCCeEEEeccccc
Q psy15217 165 GNDIPIIKGSAKLA 178 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g 178 (396)
+-|+.+||++.
T Consensus 149 ---~LFiE~SAkt~ 159 (209)
T KOG0080|consen 149 ---CLFIECSAKTR 159 (209)
T ss_pred ---cEEEEcchhhh
Confidence 45999999996
No 263
>KOG0087|consensus
Probab=99.55 E-value=7.9e-14 Score=118.01 Aligned_cols=142 Identities=18% Similarity=0.123 Sum_probs=97.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCe--eEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~~ 87 (396)
...++|+++|++++|||-|+.+++... ...|....+-++........+++ ...||||+|+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnE----------------F~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQER 75 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNE----------------FSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQER 75 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccc----------------cCcccccceeEEEEeeceeecCcEEEEeeecccchhh
Confidence 457899999999999999999987432 12222223334444444444554 457999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCChhHHHH----HHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPMPQTREH----ILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~----l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
|..-+..+.+.|-+|+||.|.+. .+|.++ |..++.. +++. +++-||+||..-. ....++.+.+.+.
T Consensus 76 yrAitSaYYrgAvGAllVYDITr---~~Tfenv~rWL~ELRdhad~nivi-mLvGNK~DL~~lr---aV~te~~k~~Ae~ 148 (222)
T KOG0087|consen 76 YRAITSAYYRGAVGALLVYDITR---RQTFENVERWLKELRDHADSNIVI-MLVGNKSDLNHLR---AVPTEDGKAFAEK 148 (222)
T ss_pred hccccchhhcccceeEEEEechh---HHHHHHHHHHHHHHHhcCCCCeEE-EEeecchhhhhcc---ccchhhhHhHHHh
Confidence 99989999999999999999976 455444 3444433 6674 4457999996521 1112244555554
Q ss_pred cCCCCCCCeEEEecccccc
Q psy15217 161 YEFPGNDIPIIKGSAKLAL 179 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~ 179 (396)
.+ ..|+.+||+.+.
T Consensus 149 ~~-----l~f~EtSAl~~t 162 (222)
T KOG0087|consen 149 EG-----LFFLETSALDAT 162 (222)
T ss_pred cC-----ceEEEecccccc
Confidence 44 479999999873
No 264
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.55 E-value=2.2e-13 Score=122.62 Aligned_cols=81 Identities=22% Similarity=0.216 Sum_probs=59.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh------
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD------ 87 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~------ 87 (396)
+|+++|.+++|||||+++|++.....+. ..+.|.+.....++..+..+.+|||||+.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~----------------~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAA----------------YEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccC----------------CCCccccceEEEEEECCeEEEEEECCCcccccccch
Confidence 6899999999999999999875322110 113444444445566778899999999743
Q ss_pred -hHHHHHhhhhcCCEEEEEEecCC
Q psy15217 88 -YIKNMITGAAQMDGAILVCSAAD 110 (396)
Q Consensus 88 -~~~~~~~~~~~~d~~llVvda~~ 110 (396)
+...+...++.+|++++|+|+++
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCc
Confidence 33456667889999999999875
No 265
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.55 E-value=1.3e-13 Score=121.62 Aligned_cols=112 Identities=22% Similarity=0.334 Sum_probs=74.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEe--eCCeeEEEEecCChhhhHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE--TKARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~~~iiDtpG~~~~~~~ 91 (396)
+|+++|+.|+|||||+.+|........ . ..++.+.....+. .....+.+||+|||.+|...
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t------------~-----~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~ 64 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST------------V-----TSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDK 64 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc------------c-----CcEeecceEEEeecCCCCceEEEEECCCCHHHHHH
Confidence 689999999999999999986421100 0 0011111112221 23567899999999999988
Q ss_pred HHhhhhcC-CEEEEEEecCCCC--ChhHHHHHHHHH----H--cCCCeEEEEEeccCCCCH
Q psy15217 92 MITGAAQM-DGAILVCSAADGP--MPQTREHILLAR----Q--VGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 92 ~~~~~~~~-d~~llVvda~~g~--~~qt~e~l~~~~----~--~~ip~iIvviNK~D~~~~ 143 (396)
+...+..+ +++|+|+|+.... ...+.+++..+. . .++| +++++||+|+...
T Consensus 65 ~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl~~a 124 (203)
T cd04105 65 LLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLFTA 124 (203)
T ss_pred HHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCC-EEEEecchhhccc
Confidence 88888888 9999999998752 233344443221 1 3677 5556899998753
No 266
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.54 E-value=7.1e-14 Score=121.84 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=95.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEe-eeeEEeeCCeeEEEEecCChhhhHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT-AHIEYETKARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~~~iiDtpG~~~~~~~ 91 (396)
.+|+++|..|+|||||+++|....... +......... ....+......+.+||+||++.|...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 65 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE----------------EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERL 65 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc----------------ccCCcccceEEEEEEECCEEEEEEEEECCCChhcccc
Confidence 589999999999999999997432110 0000111111 11122222345789999999888655
Q ss_pred HHhhhhcCCEEEEEEecCCCCC-hhHH-HHHHHHHHc--CCCeEEEEEeccCCCCHH--------HHHHHHHHHHHHHHh
Q psy15217 92 MITGAAQMDGAILVCSAADGPM-PQTR-EHILLARQV--GVPYIVVFLNKADMVDDE--------ELLELVEIEIRELLN 159 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g~~-~qt~-e~l~~~~~~--~ip~iIvviNK~D~~~~~--------~~~~~i~~~~~~~l~ 159 (396)
....++.+|+++++.|.+.... .... .++..+... .+| ++++.||+|+.+.. ..... ..+...+.+
T Consensus 66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~ 143 (187)
T cd04129 66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAVAKEEYRTQRFVP-IQQGKRVAK 143 (187)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCcccccccccCCcCC-HHHHHHHHH
Confidence 4455678999999999976321 1111 223333322 567 55578999985421 00111 113344455
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.++. .+++++||++| .++.++++++.+.+
T Consensus 144 ~~~~----~~~~e~Sa~~~----------~~v~~~f~~l~~~~ 172 (187)
T cd04129 144 EIGA----KKYMECSALTG----------EGVDDVFEAATRAA 172 (187)
T ss_pred HhCC----cEEEEccCCCC----------CCHHHHHHHHHHHH
Confidence 5543 57999999998 68999999987643
No 267
>KOG0086|consensus
Probab=99.54 E-value=2.3e-13 Score=108.63 Aligned_cols=145 Identities=18% Similarity=0.174 Sum_probs=98.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEe--eCCeeEEEEecCChhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE--TKARHYAHVDCPGHADY 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~~~iiDtpG~~~~ 88 (396)
..++++++|+.|+|||.|+.++....-+. .. ...+.++....... .....+.||||+|+++|
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkD------------ds----sHTiGveFgSrIinVGgK~vKLQIWDTAGQErF 71 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKD------------DS----SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERF 71 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcc------------cc----cceeeeeecceeeeecCcEEEEEEeecccHHHH
Confidence 46799999999999999999998653221 11 11222333333333 33446789999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCC-CCChhHHHHHHHHHHcCCCeEE--EEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIV--VFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~-g~~~qt~e~l~~~~~~~ip~iI--vviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
..-+.++.+.|.+++||.|++. ..+...-.++.-++.+--|.|+ ++-||-|+.+..+. .-.+...+..+.
T Consensus 72 RSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~V---tflEAs~FaqEn---- 144 (214)
T KOG0086|consen 72 RSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREV---TFLEASRFAQEN---- 144 (214)
T ss_pred HHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhh---hHHHHHhhhccc----
Confidence 9999999999999999999987 3344455566667777555443 34599999765221 112345555433
Q ss_pred CCCeEEEecccccc
Q psy15217 166 NDIPIIKGSAKLAL 179 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~ 179 (396)
...+...||++|.
T Consensus 145 -el~flETSa~TGe 157 (214)
T KOG0086|consen 145 -ELMFLETSALTGE 157 (214)
T ss_pred -ceeeeeecccccc
Confidence 3468999999984
No 268
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.54 E-value=9.9e-14 Score=117.45 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=89.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhhHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIK 90 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~ 90 (396)
++|+++|+.|+|||||+.+++...-.. ... .+.......+..++ ..+.+|||+|.+.+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~------------~~~------~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ------------LES------PEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC------------CCC------CCccceEEEEEECCEEEEEEEEECCCCCch--
Confidence 489999999999999999987531100 000 00000111223333 45789999999753
Q ss_pred HHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc----CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV----GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~----~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
.....+|++++|+|.++... .....++..+... ++| ++++.||+|+...... +...++..++.+..+
T Consensus 61 ---~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~~-~v~~~~~~~~~~~~~--- 132 (158)
T cd04103 61 ---QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIP-LILVGTQDAISESNPR-VIDDARARQLCADMK--- 132 (158)
T ss_pred ---hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcCCc-ccCHHHHHHHHHHhC---
Confidence 23467999999999987322 2223333333332 466 5567799998431100 011123344444332
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
.++++++||+++ .+++++++.+.+
T Consensus 133 -~~~~~e~SAk~~----------~~i~~~f~~~~~ 156 (158)
T cd04103 133 -RCSYYETCATYG----------LNVERVFQEAAQ 156 (158)
T ss_pred -CCcEEEEecCCC----------CCHHHHHHHHHh
Confidence 368999999998 589999998865
No 269
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.54 E-value=7e-14 Score=111.99 Aligned_cols=107 Identities=25% Similarity=0.350 Sum_probs=72.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh------
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD------ 87 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~------ 87 (396)
+|+++|.+|+|||||+++|++........ ..+.|.......+..++..+.|+||||..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~---------------~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~ 65 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSN---------------IPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDN 65 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESS---------------STTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccc---------------cccceeeeeeeeeeeceeeEEEEeCCCCcccchhhH
Confidence 68999999999999999999632111111 124444444455666888889999999421
Q ss_pred ---hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEec
Q psy15217 88 ---YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNK 137 (396)
Q Consensus 88 ---~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK 137 (396)
........+..+|++++|+|+.+....+..+.+..+. .+.| +++|+||
T Consensus 66 ~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 66 DGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 3344555667899999999988743444555555554 5556 6667898
No 270
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.53 E-value=3.9e-13 Score=119.85 Aligned_cols=158 Identities=15% Similarity=0.064 Sum_probs=97.1
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEE--eeCCeeEEEEecCCh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY--ETKARHYAHVDCPGH 85 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~--~~~~~~~~iiDtpG~ 85 (396)
.....++|+++|+.|+|||||+++++...... +....+..+.....+ ......+.+|||||+
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~ 68 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEK----------------KYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCC----------------CCCCccceEEEEEEEEECCeEEEEEEEECCCc
Confidence 44567999999999999999998766432110 001111122222223 223456789999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCChhH-HHHHHHHH--HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQT-REHILLAR--QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~~qt-~e~l~~~~--~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
++|..........+|++++|+|.++...-+. ...+..+. .-++| ++++.||+|+.+..... +...+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~~~~~~-----~~~~~~~~~- 141 (215)
T PTZ00132 69 EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIP-IVLVGNKVDVKDRQVKA-----RQITFHRKK- 141 (215)
T ss_pred hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccCccccCCH-----HHHHHHHHc-
Confidence 9997777777788999999999987332221 11222221 12567 45567999986531111 112233332
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
...++++||+++ .++.+.+.+|.+.+
T Consensus 142 ----~~~~~e~Sa~~~----------~~v~~~f~~ia~~l 167 (215)
T PTZ00132 142 ----NLQYYDISAKSN----------YNFEKPFLWLARRL 167 (215)
T ss_pred ----CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 257999999997 47777777776544
No 271
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.53 E-value=1.5e-13 Score=121.54 Aligned_cols=168 Identities=18% Similarity=0.248 Sum_probs=111.6
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEe-eeeEEeeCCeeEEEEecCChhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT-AHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
.++++|+.++|..|+|||||+|+|++......... |.+.+. .+....++...++|||+||.++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~v----------------g~~t~~~~~~~~~~~~~~l~lwDtPG~gd 99 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKV----------------GVGTDITTRLRLSYDGENLVLWDTPGLGD 99 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeec----------------ccCCCchhhHHhhccccceEEecCCCccc
Confidence 56889999999999999999999995432211100 111111 1112234557799999999655
Q ss_pred -------hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCC-CeEEEEEeccCCCCH------------HHHH
Q psy15217 88 -------YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGV-PYIVVFLNKADMVDD------------EELL 147 (396)
Q Consensus 88 -------~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~i-p~iIvviNK~D~~~~------------~~~~ 147 (396)
|.......+...|.+++++++.+...+...+.+.-....+. ..+++++|.+|+..+ ....
T Consensus 100 g~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~ 179 (296)
T COG3596 100 GKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIK 179 (296)
T ss_pred chhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHH
Confidence 77778888889999999999998666666666655555544 557788999997532 1222
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 148 ELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 148 ~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
+.+.+......+.+. ...|++.+|+... | ++..|..++...+|..
T Consensus 180 qfi~~k~~~~~~~~q---~V~pV~~~~~r~~------w----gl~~l~~ali~~lp~e 224 (296)
T COG3596 180 QFIEEKAEALGRLFQ---EVKPVVAVSGRLP------W----GLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHHHHHHHHHh---hcCCeEEeccccC------c----cHHHHHHHHHHhCccc
Confidence 333333333333222 1357888886554 4 8999999999988743
No 272
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.52 E-value=2.4e-13 Score=119.36 Aligned_cols=167 Identities=16% Similarity=0.176 Sum_probs=107.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh----
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY---- 88 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~---- 88 (396)
++|+++|.+|+|||||+|.|++....... ....+.|........+..++.++++||||..+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~--------------~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~ 66 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESK--------------LSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP 66 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccc--------------cCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh
Confidence 58999999999999999999875321110 012356666666666778899999999995432
Q ss_pred ---HHHHHhh----hhcCCEEEEEEecCCCCChhHHHHHHHHHHc-C---CCeEEEEEeccCCCCHH---HHHHHHHHHH
Q psy15217 89 ---IKNMITG----AAQMDGAILVCSAADGPMPQTREHILLARQV-G---VPYIVVFLNKADMVDDE---ELLELVEIEI 154 (396)
Q Consensus 89 ---~~~~~~~----~~~~d~~llVvda~~g~~~qt~e~l~~~~~~-~---ip~iIvviNK~D~~~~~---~~~~~i~~~~ 154 (396)
...+... ...+|++++|+++.+ ......+.+..+... | .+++++++|+.|....+ +........+
T Consensus 67 ~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l 145 (196)
T cd01852 67 EQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEAL 145 (196)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHH
Confidence 2223222 346899999999987 666667777666553 3 24566778999987642 2222233456
Q ss_pred HHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 155 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
+.+++.++- .++..++... + ...+..+.+|++.+.+.++.
T Consensus 146 ~~l~~~c~~-----r~~~f~~~~~-~----~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 146 KRLLEKCGG-----RYVAFNNKAK-G----EEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HHHHHHhCC-----eEEEEeCCCC-c----chhHHHHHHHHHHHHHHHHh
Confidence 777776653 2444444321 0 00124788999999887653
No 273
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.5e-12 Score=124.46 Aligned_cols=227 Identities=19% Similarity=0.234 Sum_probs=150.7
Q ss_pred ccccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecC
Q psy15217 4 SKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCP 83 (396)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtp 83 (396)
+.++...|++.++++|++|.|||||+..|........ -.+....+|+. ....+.++|+.||
T Consensus 61 rtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~t-------------i~~i~GPiTvv------sgK~RRiTflEcp 121 (1077)
T COG5192 61 RTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQT-------------IDEIRGPITVV------SGKTRRITFLECP 121 (1077)
T ss_pred CCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhh-------------hhccCCceEEe------ecceeEEEEEeCh
Confidence 3445567889999999999999999999976432210 01111123332 2356889999999
Q ss_pred ChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 84 G~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
.-+..|+..+..||.++|+||++-|....|.|.|.++...|.|.++-|+|..|+.........++..++..+..--+
T Consensus 122 ---~Dl~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiy 198 (1077)
T COG5192 122 ---SDLHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIY 198 (1077)
T ss_pred ---HHHHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHc
Confidence 44778999999999999999999999999999999999999999999999999987655555555555444332223
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEe---------eCCCc--eEEEE
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFS---------ISGRG--TVVTG 232 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~---------~~~~G--~v~~g 232 (396)
+ ...++..|.... ..|....+..|-.++.-.--.|.+..+..+.+..+++-. -+..| ..++|
T Consensus 199 q--GaKlFylsgV~n-----GRYpDreilnLsRfisVMKfRPl~Wrn~HPy~laDR~~Dlt~p~~ieq~~kv~rki~vYG 271 (1077)
T COG5192 199 Q--GAKLFYLSGVEN-----GRYPDREILNLSRFISVMKFRPLEWRNMHPYVLADRVDDLTLPVDIEQNPKVGRKITVYG 271 (1077)
T ss_pred C--CceEEEeccccc-----CCCCCHHHHHHHHHHhhhcccccccccCCceeehhhhccccchhhhhhccccCceEEEEE
Confidence 2 355888887642 344445566666655433334544444444444443322 12223 34678
Q ss_pred EEEe-eEEecCCEEEEeecCCceeEEEE
Q psy15217 233 RVER-GIVRVGEELEIIGIKDTVKTTCT 259 (396)
Q Consensus 233 ~v~~-G~l~~g~~v~~~p~~~~~~~~v~ 259 (396)
.+.. |-.+....|.+.+.+.+....|.
T Consensus 272 YlhGt~Lp~~d~~vHIpGvGDf~~adve 299 (1077)
T COG5192 272 YLHGTGLPRKDMEVHIPGVGDFRMADVE 299 (1077)
T ss_pred EecCCCCCCCCceEeccCccccchhhhh
Confidence 8875 66667777777655554433333
No 274
>PRK09866 hypothetical protein; Provisional
Probab=99.50 E-value=7.5e-13 Score=130.32 Aligned_cols=113 Identities=20% Similarity=0.136 Sum_probs=80.8
Q ss_pred eeEEEEecCChhh-----hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcC--CCeEEEEEeccCCCCH-HHH
Q psy15217 75 RHYAHVDCPGHAD-----YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVG--VPYIVVFLNKADMVDD-EEL 146 (396)
Q Consensus 75 ~~~~iiDtpG~~~-----~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~--ip~iIvviNK~D~~~~-~~~ 146 (396)
..+.|+||||... +.+.|...+..+|++++|+|+..+.....++.+..++..+ .| +++++||+|+.+. ++.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~P-VILVVNKIDl~dreedd 308 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVP-LYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCC-EEEEEEcccCCCcccch
Confidence 5789999999422 4556777888999999999999877777777777787777 47 5557899999752 212
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 147 LELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 147 ~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
.+.+...+...+...+. ....++|+||+.| .++..|++.+..
T Consensus 309 kE~Lle~V~~~L~q~~i--~f~eIfPVSAlkG----------~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCI--TPQQIFPVSSMWG----------YLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCC--CCceEEEEeCCCC----------CCHHHHHHHHHh
Confidence 33344344444433333 2356999999998 578888888876
No 275
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.49 E-value=4.9e-13 Score=117.08 Aligned_cols=158 Identities=16% Similarity=0.063 Sum_probs=93.1
Q ss_pred eeEEEEEeCCCCChHHHHH-HHHhhhhhhcCCccccccccCCChhHhhcCceEE---ee--e--------eEEeeCCeeE
Q psy15217 12 HINVGTIGHVDHGKTTLTA-AIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN---TA--H--------IEYETKARHY 77 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~-~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~---~~--~--------~~~~~~~~~~ 77 (396)
.++|+++|+.++|||||+. ++........ .... +...|+. .. . ..++.....+
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~-----------~f~~--~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l 68 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQY-----------QLLA--THVPTVWAIDQYRVCQEVLERSRDVVDGVSVSL 68 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccc-----------cCcc--ccCCceecccceeEEeeeccccceeeCCEEEEE
Confidence 4799999999999999996 4432210000 0000 0112221 00 0 0122234567
Q ss_pred EEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCC-ChhHHH-HHHHHHH--cCCCeEEEEEeccCCCCHH--H------
Q psy15217 78 AHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTRE-HILLARQ--VGVPYIVVFLNKADMVDDE--E------ 145 (396)
Q Consensus 78 ~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e-~l~~~~~--~~ip~iIvviNK~D~~~~~--~------ 145 (396)
.||||+|++++. ....+..+|++++|+|.++.. +..... ++..+.. -++| ++++.||+|+.+.. .
T Consensus 69 ~iwDTaG~~~~~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~ 145 (195)
T cd01873 69 RLWDTFGDHDKD--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP-VILVGCKLDLRYADLDEVNRARR 145 (195)
T ss_pred EEEeCCCChhhh--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhccccccchhhhccc
Confidence 899999997643 233567899999999998732 222221 2333332 2566 55678999986410 0
Q ss_pred --------HHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 146 --------LLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 146 --------~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
......++.+.+.+.++ ++++.+||++| .++.++++.+.+
T Consensus 146 ~~~~~~~~~~~V~~~e~~~~a~~~~-----~~~~E~SAkt~----------~~V~e~F~~~~~ 193 (195)
T cd01873 146 PLARPIKNADILPPETGRAVAKELG-----IPYYETSVVTQ----------FGVKDVFDNAIR 193 (195)
T ss_pred ccccccccCCccCHHHHHHHHHHhC-----CEEEEcCCCCC----------CCHHHHHHHHHH
Confidence 00111234556666554 57999999998 589999988765
No 276
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.48 E-value=2.6e-13 Score=106.02 Aligned_cols=83 Identities=18% Similarity=0.292 Sum_probs=71.7
Q ss_pred ceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEcc-----------CCcccccCCCEEEEEEEecceeec
Q psy15217 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-----------KNKEMVMPGDNVLITVRLINPIAM 371 (396)
Q Consensus 303 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----------~~~~~l~~g~~~~v~~~~~~p~~~ 371 (396)
.+.+|+|++.||+.. ||.+||++.+|+++.+..|++..+ .++.+|..||.+.|+|++.+|+|+
T Consensus 2 ~~~~f~a~i~~l~~~------pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~~~~~~l~~n~~a~v~i~~~~pi~~ 75 (103)
T cd04095 2 VSDQFAATLVWMDEE------PLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEHEAADTLELNDIGRVELSLSKPLAF 75 (103)
T ss_pred ccceeeEEEEEecCc------ccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCccCCCEECCCCeEEEEEEeCCccEe
Confidence 467899999999953 899999999999999999887521 246789999999999999999999
Q ss_pred ccC------CeEEE--EeCCcEEEEEEE
Q psy15217 372 EEG------LRFAI--REGGRTVGAGVV 391 (396)
Q Consensus 372 ~~~------~r~~l--r~~~~t~~~G~i 391 (396)
+++ +||+| |++|.|+|+|+|
T Consensus 76 d~~~~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 76 DPYRENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred cchhhCCCcceEEEEECCCCcEEEEEeC
Confidence 986 79999 556899999986
No 277
>KOG0076|consensus
Probab=99.47 E-value=4.6e-13 Score=109.64 Aligned_cols=173 Identities=21% Similarity=0.175 Sum_probs=115.4
Q ss_pred ccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh
Q psy15217 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (396)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~ 85 (396)
|...|....+.|+|..+|||||++.++-.......++.. +.+. ..|........+.....+.|||..|+
T Consensus 11 ~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~---------~~ki--~~tvgLnig~i~v~~~~l~fwdlgGQ 79 (197)
T KOG0076|consen 11 YMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLN---------PSKI--TPTVGLNIGTIEVCNAPLSFWDLGGQ 79 (197)
T ss_pred HHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCC---------HHHe--ecccceeecceeeccceeEEEEcCCh
Confidence 345677899999999999999999998655443322211 1111 23333333344445678899999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCC-CChhH----HHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADG-PMPQT----REHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g-~~~qt----~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
+...+.+..+...++++++||||++. .++.. +..+..-...|+|.++ .+||-|+.+..+. .++...+.. .+.
T Consensus 80 e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~-lankqd~q~~~~~-~El~~~~~~-~e~ 156 (197)
T KOG0076|consen 80 ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLV-LANKQDLQNAMEA-AELDGVFGL-AEL 156 (197)
T ss_pred HHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhh-hcchhhhhhhhhH-HHHHHHhhh-hhh
Confidence 99999999999999999999999983 33222 2223333445999666 4699999886432 223222221 232
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
. +..+.|+.|+||++| +|+.+-.+++...++.
T Consensus 157 ~--~~rd~~~~pvSal~g----------egv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 157 I--PRRDNPFQPVSALTG----------EGVKEGIEWLVKKLEK 188 (197)
T ss_pred c--CCccCccccchhhhc----------ccHHHHHHHHHHHHhh
Confidence 2 235789999999998 5777777777665543
No 278
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.47 E-value=4.2e-13 Score=114.14 Aligned_cols=126 Identities=23% Similarity=0.344 Sum_probs=73.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEe---eCCeeEEEEecCChhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE---TKARHYAHVDCPGHADY 88 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~---~~~~~~~iiDtpG~~~~ 88 (396)
.-.|.++|+.|||||+|..+|....... ..|.-.....+. .....+.++|+|||.+.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~--------------------T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rl 62 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVP--------------------TVTSMENNIAYNVNNSKGKKLRLVDIPGHPRL 62 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-----------------------B---SSEEEECCGSSTCGTCECEEEETT-HCC
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCC--------------------eeccccCCceEEeecCCCCEEEEEECCCcHHH
Confidence 3568999999999999999998752110 001001111111 24567999999999998
Q ss_pred HHHHHhh---hhcCCEEEEEEecCCCC--ChhHHHHHHHHHH-----cCCCeEEEEEeccCCCCH---HHHHHHHHHHHH
Q psy15217 89 IKNMITG---AAQMDGAILVCSAADGP--MPQTREHILLARQ-----VGVPYIVVFLNKADMVDD---EELLELVEIEIR 155 (396)
Q Consensus 89 ~~~~~~~---~~~~d~~llVvda~~g~--~~qt~e~l~~~~~-----~~ip~iIvviNK~D~~~~---~~~~~~i~~~~~ 155 (396)
....... ...+.++|+|||+.... ...+-|+|+-+.. .+.+.+++++||.|+..+ ..+.+.++.|+.
T Consensus 63 r~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~ 142 (181)
T PF09439_consen 63 RSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEID 142 (181)
T ss_dssp CHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHH
T ss_pred HHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHH
Confidence 7776665 77899999999997511 1233344332221 133446668899998864 334444455554
Q ss_pred HH
Q psy15217 156 EL 157 (396)
Q Consensus 156 ~~ 157 (396)
.+
T Consensus 143 ~l 144 (181)
T PF09439_consen 143 KL 144 (181)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 279
>KOG1489|consensus
Probab=99.46 E-value=1.1e-12 Score=117.74 Aligned_cols=153 Identities=18% Similarity=0.216 Sum_probs=93.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC-eeEEEEecCCh----
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGH---- 85 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpG~---- 85 (396)
..-.++++|-++||||||+++|+......+...+ +|.........+++ ..+++-|.||-
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaF----------------TTL~P~iG~v~yddf~q~tVADiPGiI~GA 258 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAF----------------TTLRPHIGTVNYDDFSQITVADIPGIIEGA 258 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccce----------------eeeccccceeeccccceeEeccCccccccc
Confidence 3457899999999999999999987654433322 23333222223333 34999999992
Q ss_pred ---hhhHHHHHhhhhcCCEEEEEEecCCCCC---hhHHHHH-HHHH----Hc-CCCeEEEEEeccCCCCHHHHHHHHHHH
Q psy15217 86 ---ADYIKNMITGAAQMDGAILVCSAADGPM---PQTREHI-LLAR----QV-GVPYIVVFLNKADMVDDEELLELVEIE 153 (396)
Q Consensus 86 ---~~~~~~~~~~~~~~d~~llVvda~~g~~---~qt~e~l-~~~~----~~-~ip~iIvviNK~D~~~~~~~~~~i~~~ 153 (396)
.-.--..++-+..++..++|+|.+.+.. -|..+.| ..+. .+ ..|.+| |+||+|+.+.+.. .
T Consensus 259 h~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~li-VaNKiD~~eae~~---~--- 331 (366)
T KOG1489|consen 259 HMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALI-VANKIDLPEAEKN---L--- 331 (366)
T ss_pred cccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEE-EEeccCchhHHHH---H---
Confidence 1122334455566999999999998621 1221111 1111 12 445555 5699999754221 1
Q ss_pred HHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 154 IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 154 ~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
++++.+.+. +..++|+||+.+ +++..|++.|..
T Consensus 332 l~~L~~~lq----~~~V~pvsA~~~----------egl~~ll~~lr~ 364 (366)
T KOG1489|consen 332 LSSLAKRLQ----NPHVVPVSAKSG----------EGLEELLNGLRE 364 (366)
T ss_pred HHHHHHHcC----CCcEEEeeeccc----------cchHHHHHHHhh
Confidence 234444332 235999999997 588888888754
No 280
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.46 E-value=8.6e-13 Score=100.76 Aligned_cols=90 Identities=24% Similarity=0.336 Sum_probs=79.7
Q ss_pred CCCceeEEEEEEEeeC--------CCceEEEEEEEeeEEecCCEEEEeecC----------CceeEEEEEEEecceeeCe
Q psy15217 209 IDGAFLLPVEDVFSIS--------GRGTVVTGRVERGIVRVGEELEIIGIK----------DTVKTTCTGVEMFRKLLDQ 270 (396)
Q Consensus 209 ~~~~~~~~i~~~~~~~--------~~G~v~~g~v~~G~l~~g~~v~~~p~~----------~~~~~~v~si~~~~~~~~~ 270 (396)
.++|++|+|.++|.+. .+|.|+.|+|.+|.|++||+|.+.|.- ....++|.||+..+..+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 4689999999999998 899999999999999999999998641 1246889999999999999
Q ss_pred eecCCeEEE---EecccCccCCCCCeEEecC
Q psy15217 271 GQAGDNIGL---LLRGTKREDVERGQVLAKP 298 (396)
Q Consensus 271 a~~G~~v~l---~l~~~~~~~i~~G~vl~~~ 298 (396)
|.||+.+++ -..++++.|..+|+|++.+
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEeecC
Confidence 999999999 5677888999999999875
No 281
>KOG0070|consensus
Probab=99.46 E-value=2.6e-13 Score=112.97 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=113.1
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
.+...+|+++|-.+|||||++..|-.... ...-.|+....-.+++.+..+++||..|++++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~-------------------vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~ 74 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEI-------------------VTTVPTIGFNVETVEYKNISFTVWDVGGQEKL 74 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCc-------------------ccCCCccccceeEEEEcceEEEEEecCCCccc
Confidence 45679999999999999999988743211 01124555555566777889999999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH---c-CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ---V-GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~---~-~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
.+.+..+....+++|+|||+++.. ....++.+..... + +.| ++|..||.|+.++-.. .++.+.+....+
T Consensus 75 R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~-llv~aNKqD~~~als~-----~ei~~~L~l~~l 148 (181)
T KOG0070|consen 75 RPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAP-LLVFANKQDLPGALSA-----AEITNKLGLHSL 148 (181)
T ss_pred ccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCce-EEEEechhhccccCCH-----HHHHhHhhhhcc
Confidence 999999999999999999999732 2333333322222 1 455 5556799999875221 245555555455
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
......+-.++|.+| +++.+-++++.+.+.
T Consensus 149 ~~~~w~iq~~~a~~G----------~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 149 RSRNWHIQSTCAISG----------EGLYEGLDWLSNNLK 178 (181)
T ss_pred CCCCcEEeecccccc----------ccHHHHHHHHHHHHh
Confidence 445556788899887 688898998877554
No 282
>KOG1191|consensus
Probab=99.46 E-value=2.8e-13 Score=128.24 Aligned_cols=165 Identities=17% Similarity=0.154 Sum_probs=111.9
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
..+..++|+++|.+|+|||||+|+|.......... ..|.|.|.-...++.++..+.+.||+|..+
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSp---------------v~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSP---------------VPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCC---------------CCCcchhhheeEeecCCeEEEEEecccccc
Confidence 34567999999999999999999998764433332 348999999999999999999999999655
Q ss_pred h---------HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCC-----------CeEEEEEeccCCCCH-HHH
Q psy15217 88 Y---------IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGV-----------PYIVVFLNKADMVDD-EEL 146 (396)
Q Consensus 88 ~---------~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~i-----------p~iIvviNK~D~~~~-~~~ 146 (396)
- +......+..+|++++|+||.++.+.+.......+...+. .++|+++||.|+..+ .+.
T Consensus 329 ~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~ 408 (531)
T KOG1191|consen 329 ESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEM 408 (531)
T ss_pred ccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccc
Confidence 1 2223344668999999999988777776665555554321 446667899998765 111
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 147 LELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 147 ~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
. .....+....+. +.......+|+.++ +++..|.+++.+.+
T Consensus 409 ~----~~~~~~~~~~~~-~~~~i~~~vs~~tk----------eg~~~L~~all~~~ 449 (531)
T KOG1191|consen 409 T----KIPVVYPSAEGR-SVFPIVVEVSCTTK----------EGCERLSTALLNIV 449 (531)
T ss_pred c----CCceeccccccC-cccceEEEeeechh----------hhHHHHHHHHHHHH
Confidence 1 011111111111 11223445888886 58888888877654
No 283
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.46 E-value=4.2e-12 Score=116.98 Aligned_cols=150 Identities=21% Similarity=0.260 Sum_probs=94.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhh-
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADY- 88 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~- 88 (396)
.++|+++|+.|+|||||+++|++......... .+.......+.+++......++.++ ..+++|||||..++
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~------~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~ 77 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYP------PDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNI 77 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCC------CCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccc
Confidence 68999999999999999999986532211110 0001111223333444444455454 46899999995433
Q ss_pred --------------------HHHHHhh-----hh--cCCEEEEEEecCC-CCChhHHHHHHHHHHcCCCeEEEEEeccCC
Q psy15217 89 --------------------IKNMITG-----AA--QMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADM 140 (396)
Q Consensus 89 --------------------~~~~~~~-----~~--~~d~~llVvda~~-g~~~qt~e~l~~~~~~~ip~iIvviNK~D~ 140 (396)
+.....- .. .+|++++++++.. ++.....+.+..+.. ++| +|+|+||+|+
T Consensus 78 ~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~-vi~VinK~D~ 155 (276)
T cd01850 78 NNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVN-IIPVIAKADT 155 (276)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCC-EEEEEECCCc
Confidence 2222211 11 4788999999875 777777888877775 778 5557899999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecc
Q psy15217 141 VDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 175 (396)
Q Consensus 141 ~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa 175 (396)
.+.++. +..+..+.+.++..+ +++++...
T Consensus 156 l~~~e~-~~~k~~i~~~l~~~~-----i~~~~~~~ 184 (276)
T cd01850 156 LTPEEL-KEFKQRIMEDIEEHN-----IKIYKFPE 184 (276)
T ss_pred CCHHHH-HHHHHHHHHHHHHcC-----CceECCCC
Confidence 886543 345556777777665 45666554
No 284
>PLN00023 GTP-binding protein; Provisional
Probab=99.45 E-value=9.7e-13 Score=121.36 Aligned_cols=140 Identities=21% Similarity=0.225 Sum_probs=87.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee-------------CCee
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-------------KARH 76 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-------------~~~~ 76 (396)
...+||+++|+.++|||||+.+|....... .....-|.+.......+.. ....
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~--------------~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~ 84 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIA--------------RPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFF 84 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCccc--------------ccCCceeeeEEEEEEEECCcccccccccccCCceEE
Confidence 457899999999999999999998542110 0001112222222222321 1245
Q ss_pred EEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHc---------------CCCeEEEEEeccCC
Q psy15217 77 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQV---------------GVPYIVVFLNKADM 140 (396)
Q Consensus 77 ~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~---------------~ip~iIvviNK~D~ 140 (396)
+.||||+|+++|...+...++.+|++|+|+|.++.. +.....++..+... ++| +++|.||+|+
T Consensus 85 LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ip-IILVGNK~DL 163 (334)
T PLN00023 85 VELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVP-YIVIGNKADI 163 (334)
T ss_pred EEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCc-EEEEEECccc
Confidence 789999999999988888899999999999998721 12222333333332 356 5556799999
Q ss_pred CCHHHHH---HHHHHHHHHHHhhcCCC
Q psy15217 141 VDDEELL---ELVEIEIRELLNKYEFP 164 (396)
Q Consensus 141 ~~~~~~~---~~i~~~~~~~l~~~~~~ 164 (396)
....... ....++.+++.++.++-
T Consensus 164 ~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 164 APKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred cccccccccccccHHHHHHHHHHcCCC
Confidence 7532100 11234677788877763
No 285
>COG2262 HflX GTPases [General function prediction only]
Probab=99.44 E-value=2.4e-12 Score=120.09 Aligned_cols=154 Identities=21% Similarity=0.205 Sum_probs=103.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC-CeeEEEEecCChhhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-ARHYAHVDCPGHADY 88 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~~ 88 (396)
.....|+++|-.|||||||+|+|++...... | .--.|.+.....+... ++.+.+-||-|.-+-
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~----------d------~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~ 253 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVA----------D------QLFATLDPTTRRIELGDGRKVLLTDTVGFIRD 253 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeecc----------c------cccccccCceeEEEeCCCceEEEecCccCccc
Confidence 4567999999999999999999995321110 1 1124555555555555 588999999995332
Q ss_pred --------HHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHH
Q psy15217 89 --------IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRE 156 (396)
Q Consensus 89 --------~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~ 156 (396)
++.++.....+|..+.|||+++.. ..|.......+..+ .+| +|+|.||+|+..+...... +.
T Consensus 254 LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p-~i~v~NKiD~~~~~~~~~~----~~- 327 (411)
T COG2262 254 LPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIP-IILVLNKIDLLEDEEILAE----LE- 327 (411)
T ss_pred CChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCC-EEEEEecccccCchhhhhh----hh-
Confidence 445666677999999999999842 23333333444444 556 5567899998876431111 11
Q ss_pred HHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 157 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
. . ..+.+++||++| .|++.|.+.|...++
T Consensus 328 --~---~---~~~~v~iSA~~~----------~gl~~L~~~i~~~l~ 356 (411)
T COG2262 328 --R---G---SPNPVFISAKTG----------EGLDLLRERIIELLS 356 (411)
T ss_pred --h---c---CCCeEEEEeccC----------cCHHHHHHHHHHHhh
Confidence 1 1 114899999998 589999999988765
No 286
>KOG0093|consensus
Probab=99.43 E-value=1.4e-12 Score=103.62 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=102.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC-eeEEEEecCChhhhHH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHADYIK 90 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpG~~~~~~ 90 (396)
..++.++|+..+|||+++-+.....-.. .+ -+.-|+...... .|+... -.+.+|||+|+++|..
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~---af-----------vsTvGidFKvKT-vyr~~kRiklQiwDTagqEryrt 85 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTS---AF-----------VSTVGIDFKVKT-VYRSDKRIKLQIWDTAGQERYRT 85 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhcccccc---ce-----------eeeeeeeEEEeE-eeecccEEEEEEEecccchhhhH
Confidence 4699999999999999998876431110 00 001122222221 233232 3578999999999999
Q ss_pred HHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHH---HHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGP-MPQTREHILLA---RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~---~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.+....+++++.||+.|.++.. +.....++-.+ ...+.|.+ ++.||||+.++. .. ..+..+.+..++|+
T Consensus 86 iTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvi-lvgnKCDmd~eR-vi--s~e~g~~l~~~LGf--- 158 (193)
T KOG0093|consen 86 ITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVI-LVGNKCDMDSER-VI--SHERGRQLADQLGF--- 158 (193)
T ss_pred HHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEE-EEecccCCccce-ee--eHHHHHHHHHHhCh---
Confidence 9999999999999999998732 22222222222 34578854 567999997642 11 12346677778886
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.++..||+.+. ++.++++.+...+
T Consensus 159 --efFEtSaK~Ni----------nVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 159 --EFFETSAKENI----------NVKQVFERLVDII 182 (193)
T ss_pred --HHhhhcccccc----------cHHHHHHHHHHHH
Confidence 49999999863 6777777766543
No 287
>KOG0075|consensus
Probab=99.42 E-value=1e-12 Score=104.38 Aligned_cols=158 Identities=17% Similarity=0.116 Sum_probs=108.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
..+.+.++|--+||||||++....+... +.-+.|.......+......+.+||.||+.+|..
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~------------------edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrs 80 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYL------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 80 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccch------------------hhhcccccceeEEeccCceEEEEEecCCCccHHH
Confidence 4678999999999999999886532110 0114455556666666777888999999999999
Q ss_pred HHHhhhhcCCEEEEEEecCCCC-ChhHHHHH----HHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGP-MPQTREHI----LLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~-~~qt~e~l----~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
.+.++.+..+++++||||.+.. ...+++.+ ..-...|+|.++ .-||.|+.++-.-. .+.+.+.......
T Consensus 81 mWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LV-LGnK~d~~~AL~~~-----~li~rmgL~sitd 154 (186)
T KOG0075|consen 81 MWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLV-LGNKIDLPGALSKI-----ALIERMGLSSITD 154 (186)
T ss_pred HHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEE-ecccccCcccccHH-----HHHHHhCcccccc
Confidence 9999999999999999999832 22233332 222335899555 57999998762111 1222222222233
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
..+-.+.+|++.. .+++.++++|.++.
T Consensus 155 REvcC~siScke~----------~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 155 REVCCFSISCKEK----------VNIDITLDWLIEHS 181 (186)
T ss_pred ceEEEEEEEEcCC----------ccHHHHHHHHHHHh
Confidence 4567889999885 58999999988753
No 288
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.42 E-value=4.7e-12 Score=111.21 Aligned_cols=145 Identities=19% Similarity=0.156 Sum_probs=86.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEe-----eCCeeEEEEecCChhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE-----TKARHYAHVDCPGHAD 87 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-----~~~~~~~iiDtpG~~~ 87 (396)
++|+++|..++|||||+.++....... . ....-|.+.......+. .....+.||||+|+++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~------------~--~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~ 66 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG------------R--PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES 66 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC------------C--CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh
Confidence 589999999999999999998542110 0 00011222222222222 1234578999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----------------------cCCCeEEEEEeccCCCCHH
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----------------------VGVPYIVVFLNKADMVDDE 144 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----------------------~~ip~iIvviNK~D~~~~~ 144 (396)
|.......++.+|++|+|+|.++... .....++..+.. .++| +|+|.||+|+.+..
T Consensus 67 ~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P-iilVGnK~Dl~~~r 145 (202)
T cd04102 67 VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP-LLVIGTKLDQIPEK 145 (202)
T ss_pred HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce-EEEEEECccchhhc
Confidence 98888888899999999999987322 122223333322 2467 55678999997642
Q ss_pred HHHH-HHHHHHHHHHhhcCCCCCCCeEEEecccc
Q psy15217 145 ELLE-LVEIEIRELLNKYEFPGNDIPIIKGSAKL 177 (396)
Q Consensus 145 ~~~~-~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~ 177 (396)
.... ........+.++++. |.+..++..
T Consensus 146 ~~~~~~~~~~~~~ia~~~~~-----~~i~~~c~~ 174 (202)
T cd04102 146 ESSGNLVLTARGFVAEQGNA-----EEINLNCTN 174 (202)
T ss_pred ccchHHHhhHhhhHHHhcCC-----ceEEEecCC
Confidence 1111 111123344455554 466656554
No 289
>PRK13768 GTPase; Provisional
Probab=99.42 E-value=5.6e-12 Score=114.80 Aligned_cols=116 Identities=24% Similarity=0.352 Sum_probs=76.2
Q ss_pred CeeEEEEecCChhhhH------HHHHhhhhc--CCEEEEEEecCCCCChhHHHHHHHHH-----HcCCCeEEEEEeccCC
Q psy15217 74 ARHYAHVDCPGHADYI------KNMITGAAQ--MDGAILVCSAADGPMPQTREHILLAR-----QVGVPYIVVFLNKADM 140 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~------~~~~~~~~~--~d~~llVvda~~g~~~qt~e~l~~~~-----~~~ip~iIvviNK~D~ 140 (396)
+..+.+||+||+.++. +.....+.. ++++++|+|+..+..+.+.+....+. ..++|.++ ++||+|+
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~-v~nK~D~ 174 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIP-VLNKADL 174 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEE-EEEhHhh
Confidence 3478999999976643 222333333 89999999998877666655444332 56888665 6799999
Q ss_pred CCHHHHHHHHHHHH------------------------HHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHH
Q psy15217 141 VDDEELLELVEIEI------------------------RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSK 196 (396)
Q Consensus 141 ~~~~~~~~~i~~~~------------------------~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~ 196 (396)
.+.++. +.....+ .+.++..+. ..+++++|+.++ .++++|++
T Consensus 175 ~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~---~~~vi~iSa~~~----------~gl~~L~~ 240 (253)
T PRK13768 175 LSEEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGL---PVRVIPVSAKTG----------EGFDELYA 240 (253)
T ss_pred cCchhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCC---CCcEEEEECCCC----------cCHHHHHH
Confidence 876332 1111111 122333332 357999999987 68999999
Q ss_pred HhhhhCCC
Q psy15217 197 ALDTYIPT 204 (396)
Q Consensus 197 ~l~~~l~~ 204 (396)
+|.+.++.
T Consensus 241 ~I~~~l~~ 248 (253)
T PRK13768 241 AIQEVFCG 248 (253)
T ss_pred HHHHHcCC
Confidence 99988763
No 290
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.41 E-value=3.4e-12 Score=115.59 Aligned_cols=117 Identities=19% Similarity=0.189 Sum_probs=79.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh-----
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH----- 85 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~----- 85 (396)
....|+++|++|+|||||++.|++...+.....+ +|-.+....|+.+...+.+|||||-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPF----------------TTK~i~vGhfe~~~~R~QvIDTPGlLDRPl 230 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPF----------------TTKGIHVGHFERGYLRIQVIDTPGLLDRPL 230 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCc----------------cccceeEeeeecCCceEEEecCCcccCCCh
Confidence 3468999999999999999999987655443332 2333444567778889999999992
Q ss_pred ---hhhHHHHHhhhh-cCCEEEEEEecCC--CCC--hhHHHHHHHHHHcCCCeEEEEEeccCCCCHH
Q psy15217 86 ---ADYIKNMITGAA-QMDGAILVCSAAD--GPM--PQTREHILLARQVGVPYIVVFLNKADMVDDE 144 (396)
Q Consensus 86 ---~~~~~~~~~~~~-~~d~~llVvda~~--g~~--~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~ 144 (396)
...-++.+.+++ ..+++++++|+++ |.. .|....-.+-..++.| +++|+||+|..+.+
T Consensus 231 ~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p-~v~V~nK~D~~~~e 296 (346)
T COG1084 231 EERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAP-IVVVINKIDIADEE 296 (346)
T ss_pred HHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCC-eEEEEecccccchh
Confidence 112334444554 5789999999987 433 3333222333344645 77789999998763
No 291
>KOG0090|consensus
Probab=99.41 E-value=4.9e-12 Score=107.41 Aligned_cols=160 Identities=19% Similarity=0.240 Sum_probs=104.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 91 (396)
.-.|.++|..|||||+|.-+|+..... ..-.++......+...+....++|.|||.+....
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~-------------------~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~k 98 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHR-------------------GTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRK 98 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCcc-------------------CeeeeeccceeeEeecCcceEEEeCCCcHHHHHH
Confidence 357899999999999999999865211 0012334445566667777899999999999888
Q ss_pred HHhhhh---cCCEEEEEEecCCCCC--hhHHHHHHHHH--H---cCCCeEEEEEeccCCCCH---HHHHHHHHHHHHHHH
Q psy15217 92 MITGAA---QMDGAILVCSAADGPM--PQTREHILLAR--Q---VGVPYIVVFLNKADMVDD---EELLELVEIEIRELL 158 (396)
Q Consensus 92 ~~~~~~---~~d~~llVvda~~g~~--~qt~e~l~~~~--~---~~ip~iIvviNK~D~~~~---~~~~~~i~~~~~~~l 158 (396)
....+. .+-++++|||+..-.. ...-|.++-.. . .+.+++++++||.|+..+ +.+.+.++.|+..+.
T Consensus 99 l~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr 178 (238)
T KOG0090|consen 99 LLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLR 178 (238)
T ss_pred HHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHH
Confidence 777766 7899999999986332 22333332221 1 244557778899998754 334444555554443
Q ss_pred hhcC---------------------------CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 159 NKYE---------------------------FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 159 ~~~~---------------------------~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
+.=. +...++.|.+.|++.+ ++.++.+|+.+.
T Consensus 179 ~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-----------~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 179 ESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-----------EIDQWESWIREA 237 (238)
T ss_pred HHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-----------ChHHHHHHHHHh
Confidence 2110 0113466788888875 577888887654
No 292
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.40 E-value=1e-11 Score=110.94 Aligned_cols=116 Identities=20% Similarity=0.167 Sum_probs=81.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhhhH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYI 89 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~ 89 (396)
.++|+++|..|+|||||+++|.+....... ...+............ ...+.+|||+|+++|.
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~ 68 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGY----------------PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYR 68 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccC----------------CCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHH
Confidence 489999999999999999999875432211 1122222222222222 3457899999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCC--CCChhHHHHHHHHHHcC---CCeEEEEEeccCCCCHH
Q psy15217 90 KNMITGAAQMDGAILVCSAAD--GPMPQTREHILLARQVG---VPYIVVFLNKADMVDDE 144 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~--g~~~qt~e~l~~~~~~~---ip~iIvviNK~D~~~~~ 144 (396)
..+..+...++++++|+|... .....+.+....+.... .| ++++.||+|+....
T Consensus 69 ~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (219)
T COG1100 69 SLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVP-ILLVGNKIDLFDEQ 127 (219)
T ss_pred HHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCce-EEEEecccccccch
Confidence 999999999999999999986 33344444444555543 56 66678999998763
No 293
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.40 E-value=7.3e-13 Score=106.45 Aligned_cols=110 Identities=23% Similarity=0.305 Sum_probs=69.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~ 93 (396)
||+++|+.|+|||||+++|.+.... +....+...+.++.............+.+||++|++.+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP------------DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc------------ccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccccc
Confidence 6899999999999999999976432 0001111123333333333444444589999999988776544
Q ss_pred hhhhcCCEEEEEEecCCCCChhHHHHH----HHHHH-----cCCCeEEEEEeccC
Q psy15217 94 TGAAQMDGAILVCSAADGPMPQTREHI----LLARQ-----VGVPYIVVFLNKAD 139 (396)
Q Consensus 94 ~~~~~~d~~llVvda~~g~~~qt~e~l----~~~~~-----~~ip~iIvviNK~D 139 (396)
..+..+|++++|+|.++ ..+.+++ ..+.. .++| ++++.||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~---~~s~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSD---PESLEYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCG---HHHHHHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCC---hHHHHHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 45888999999999987 3333332 12222 2477 555679998
No 294
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.39 E-value=2.3e-11 Score=108.19 Aligned_cols=160 Identities=19% Similarity=0.253 Sum_probs=98.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee-CCeeEEEEecCChhhhHHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~ 92 (396)
||+++|..+|||||..+.+....... +-..-|.|++.....+.. ....+.+||+||+..|..+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~---------------dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~ 65 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR---------------DTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY 65 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG---------------GGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch---------------hccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc
Confidence 68999999999999999998653211 111225666666555543 44589999999998887663
Q ss_pred -----HhhhhcCCEEEEEEecCCCCChhHHHHH----HHHHHc--CCCeEEEEEeccCCCCHH---HHHHHHHHHHHHHH
Q psy15217 93 -----ITGAAQMDGAILVCSAADGPMPQTREHI----LLARQV--GVPYIVVFLNKADMVDDE---ELLELVEIEIRELL 158 (396)
Q Consensus 93 -----~~~~~~~d~~llVvda~~g~~~qt~e~l----~~~~~~--~ip~iIvviNK~D~~~~~---~~~~~i~~~~~~~l 158 (396)
..-.+.+++.|+|+|+...........+ ..+... +++.. |.+.|||+..++ +.++.+.+.+.+.+
T Consensus 66 ~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~-vfiHK~D~l~~~~r~~~~~~~~~~i~~~~ 144 (232)
T PF04670_consen 66 FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVF-VFIHKMDLLSEDEREEIFRDIQQRIRDEL 144 (232)
T ss_dssp HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEE-EEEE-CCCS-HHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEE-EEEeecccCCHHHHHHHHHHHHHHHHHHh
Confidence 3346789999999999954444443333 233333 55644 468999998763 35555666777777
Q ss_pred hhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 159 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
...+.. .+.++.+|.+.. ++-+.+..+.+.+
T Consensus 145 ~~~~~~--~~~~~~TSI~D~-----------Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 145 EDLGIE--DITFFLTSIWDE-----------SLYEAWSKIVQKL 175 (232)
T ss_dssp HHTT-T--SEEEEEE-TTST-----------HHHHHHHHHHHTT
T ss_pred hhcccc--ceEEEeccCcCc-----------HHHHHHHHHHHHH
Confidence 766652 578999999873 5656555555544
No 295
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.38 E-value=2.6e-12 Score=115.52 Aligned_cols=169 Identities=20% Similarity=0.236 Sum_probs=87.8
Q ss_pred EEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeE---------------------------
Q psy15217 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE--------------------------- 69 (396)
Q Consensus 17 i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~--------------------------- 69 (396)
|+|+.||||||+++.+.+.....++.... ..+|...++......+++....
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~--vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~ 78 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYI--VNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEEN 78 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEE--EE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceE--EEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHH
Confidence 68999999999999998876655433221 2355555444444444432110
Q ss_pred E-------eeCCeeEEEEecCChhhhHHHHHhh------hh--cCCEEEEEEecCCCCChhH-----HHHHHHHHHcCCC
Q psy15217 70 Y-------ETKARHYAHVDCPGHADYIKNMITG------AA--QMDGAILVCSAADGPMPQT-----REHILLARQVGVP 129 (396)
Q Consensus 70 ~-------~~~~~~~~iiDtpG~~~~~~~~~~~------~~--~~d~~llVvda~~g~~~qt-----~e~l~~~~~~~ip 129 (396)
+ +.....+.++||||+.++...+..+ +. ..-++++++|+..-..+.. ...+.....+++|
T Consensus 79 ~d~l~~~i~~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP 158 (238)
T PF03029_consen 79 IDWLDEEIEKYEDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELP 158 (238)
T ss_dssp HHHHHHHHHHHH-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHhhcCCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCC
Confidence 0 0012379999999987765443333 33 3457889999986333322 2222233346999
Q ss_pred eEEEEEeccCCCCHH--HH-----------------HHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCc
Q psy15217 130 YIVVFLNKADMVDDE--EL-----------------LELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQS 190 (396)
Q Consensus 130 ~iIvviNK~D~~~~~--~~-----------------~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~ 190 (396)
++. |+||+|+.+.. .. ++.+..++.+++..++. ..+++|+|+.++ ++
T Consensus 159 ~vn-vlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~---~~~f~pls~~~~----------~~ 224 (238)
T PF03029_consen 159 HVN-VLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL---VIRFIPLSSKDG----------EG 224 (238)
T ss_dssp EEE-EE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS---S---EE-BTTTT----------TT
T ss_pred EEE-eeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC---CceEEEEECCCh----------HH
Confidence 766 57999998721 11 12233345555555554 238999999987 68
Q ss_pred HHHHHHHhhhh
Q psy15217 191 ILSLSKALDTY 201 (396)
Q Consensus 191 ~~~Ll~~l~~~ 201 (396)
+.+|+..+++.
T Consensus 225 ~~~L~~~id~a 235 (238)
T PF03029_consen 225 MEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 296
>KOG0079|consensus
Probab=99.37 E-value=7.5e-12 Score=99.58 Aligned_cols=156 Identities=17% Similarity=0.232 Sum_probs=106.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 91 (396)
.++..|+|.+|+|||+|+-++... ...+++.. ..|+...+....++.+...+.||||+|+++|...
T Consensus 8 LfkllIigDsgVGKssLl~rF~dd---tFs~sYit-----------TiGvDfkirTv~i~G~~VkLqIwDtAGqErFrti 73 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADD---TFSGSYIT-----------TIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTI 73 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhc---ccccceEE-----------EeeeeEEEEEeecCCcEEEEEEeecccHHHHHHH
Confidence 457889999999999999877532 11111110 1122223333444445567889999999999999
Q ss_pred HHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15217 92 MITGAAQMDGAILVCSAADGP-MPQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 168 (396)
+....+..+++++|.|.+.+. +..-+.+|..+... .+|.++ |-||.|..+... ...++.+.+....+ +
T Consensus 74 tstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vL-VGNK~d~~~Rrv---V~t~dAr~~A~~mg-----i 144 (198)
T KOG0079|consen 74 TSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVL-VGNKNDDPERRV---VDTEDARAFALQMG-----I 144 (198)
T ss_pred HHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcccccee-cccCCCCcccee---eehHHHHHHHHhcC-----c
Confidence 999999999999999999854 56677777777664 577666 469999876421 12235666666655 4
Q ss_pred eEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 169 ~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
.++..||+.. .+++..+..|.+
T Consensus 145 e~FETSaKe~----------~NvE~mF~cit~ 166 (198)
T KOG0079|consen 145 ELFETSAKEN----------ENVEAMFHCITK 166 (198)
T ss_pred hheehhhhhc----------ccchHHHHHHHH
Confidence 6999999986 355565555544
No 297
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.35 E-value=1.8e-11 Score=114.52 Aligned_cols=176 Identities=19% Similarity=0.163 Sum_probs=102.4
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccc----------ccc-CCChhH---hhcCceEEee----e---
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSY----------DQI-DAAPEE---KARGITINTA----H--- 67 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~----------~~~-d~~~~e---~~~g~t~~~~----~--- 67 (396)
..+...|+++|.+|+|||||+..|.......+....... ..+ |+..-+ ...+.-+... +
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 456789999999999999999999876654432111000 001 111111 1111111110 0
Q ss_pred ---------eEEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEecc
Q psy15217 68 ---------IEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKA 138 (396)
Q Consensus 68 ---------~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~ 138 (396)
..++..+..+.|+||+|...-. ......+|.+++|++...|..-|... ...+.+..++ |+||+
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k----~gi~E~aDIi-VVNKa 204 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK----KGIMELADLI-VINKA 204 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH----hhhhhhhheE-Eeehh
Confidence 0122346789999999965221 22355799999998755544333321 1122333354 57999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcC--CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 139 DMVDDEELLELVEIEIRELLNKYE--FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 139 D~~~~~~~~~~i~~~~~~~l~~~~--~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
|+.+... .+....+++..+.... .+.+..|++++||.++ .|+++|++.+.++++
T Consensus 205 Dl~~~~~-a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g----------~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 205 DGDNKTA-ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEG----------EGIDEIWQAIEDHRA 260 (332)
T ss_pred cccchhH-HHHHHHHHHHHHhcccccccCCCCCEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 9987532 2333345665555322 1224579999999997 589999999888654
No 298
>KOG0071|consensus
Probab=99.34 E-value=3.4e-11 Score=95.08 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=106.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
.+.++|+.+|-.+|||||++..|.-...... -.|...+.....+.+..++.||..|+.+..
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~-------------------ipTvGFnvetVtykN~kfNvwdvGGqd~iR 75 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-------------------IPTVGFNVETVTYKNVKFNVWDVGGQDKIR 75 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCccc-------------------ccccceeEEEEEeeeeEEeeeeccCchhhh
Confidence 3478999999999999999999864321110 112222333344566778999999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCCC-CChhHHHHHHHHH---Hc-CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADG-PMPQTREHILLAR---QV-GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g-~~~qt~e~l~~~~---~~-~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
+.+.++.....+.|+|+|+.+. .....++.+..+. .+ ..+.+| ..||.|+.++... .++.+++..-...
T Consensus 76 plWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~Lv-lANkQDlp~A~~p-----qei~d~leLe~~r 149 (180)
T KOG0071|consen 76 PLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILI-LANKQDLPDAMKP-----QEIQDKLELERIR 149 (180)
T ss_pred HHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEE-EecCcccccccCH-----HHHHHHhcccccc
Confidence 9999999999999999998863 2233333332221 12 456444 5699999876221 2345555433344
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+...-+.|++|.+| +++.+-+.+|.+.+.
T Consensus 150 ~~~W~vqp~~a~~g----------dgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 150 DRNWYVQPSCALSG----------DGLKEGLSWLSNNLK 178 (180)
T ss_pred CCccEeeccccccc----------hhHHHHHHHHHhhcc
Confidence 44556889999987 678888888876543
No 299
>KOG0091|consensus
Probab=99.33 E-value=1.9e-11 Score=99.07 Aligned_cols=152 Identities=14% Similarity=0.127 Sum_probs=102.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee-CC--eeEEEEecCChhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KA--RHYAHVDCPGHADY 88 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~--~~~~iiDtpG~~~~ 88 (396)
++++.++|..-+|||+|+..++.+.-..-... .+.++.-...++. ++ -.+.+|||+|+++|
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdp----------------tvgvdffarlie~~pg~riklqlwdtagqerf 71 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDP----------------TVGVDFFARLIELRPGYRIKLQLWDTAGQERF 71 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCC----------------ccchHHHHHHHhcCCCcEEEEEEeeccchHHH
Confidence 67999999999999999999986532221111 1111111111111 22 24679999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHH----HH-HcC---CCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPMPQTREHILL----AR-QVG---VPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~----~~-~~~---ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
..-+.++.+++-++++|.|.++ ..+.||... +. ..+ .+.+.+|-.|+|+.... +...++.+.+.+.
T Consensus 72 rsitksyyrnsvgvllvyditn---r~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR---qVt~EEaEklAa~ 145 (213)
T KOG0091|consen 72 RSITKSYYRNSVGVLLVYDITN---RESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR---QVTAEEAEKLAAS 145 (213)
T ss_pred HHHHHHHhhcccceEEEEeccc---hhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhc---cccHHHHHHHHHh
Confidence 9999999999999999999987 444455432 22 223 33455667999997542 2223467778888
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
+++ .|+.+||++| .++++.++.|.+
T Consensus 146 hgM-----~FVETSak~g----------~NVeEAF~mlaq 170 (213)
T KOG0091|consen 146 HGM-----AFVETSAKNG----------CNVEEAFDMLAQ 170 (213)
T ss_pred cCc-----eEEEecccCC----------CcHHHHHHHHHH
Confidence 876 5999999998 466666665544
No 300
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.31 E-value=9.6e-12 Score=110.15 Aligned_cols=173 Identities=23% Similarity=0.207 Sum_probs=100.1
Q ss_pred cCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCC--------------ccccccccCCChhHhhcCceEEeeee----
Q psy15217 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG--------------EAKSYDQIDAAPEEKARGITINTAHI---- 68 (396)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~--------------~~~~~~~~d~~~~e~~~g~t~~~~~~---- 68 (396)
.+..+...|+|.|.+|+|||||++.|.......+.. .+..-.......+....++-+-+...
T Consensus 24 ~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~l 103 (266)
T PF03308_consen 24 PHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSL 103 (266)
T ss_dssp GGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSH
T ss_pred hhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCC
Confidence 344567899999999999999999998765544321 11111112222333444555443211
Q ss_pred ------------EEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEe
Q psy15217 69 ------------EYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLN 136 (396)
Q Consensus 69 ------------~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviN 136 (396)
.++..++.++|+.|.|...-- ..-...+|..++|+.+..|..-|.. .+-.+.+..++| +|
T Consensus 104 GGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~----KaGimEiaDi~v-VN 175 (266)
T PF03308_consen 104 GGLSRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAI----KAGIMEIADIFV-VN 175 (266)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-----TTHHHH-SEEE-EE
T ss_pred CCccHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHH----hhhhhhhccEEE-Ee
Confidence 123457889999999944321 2224569999999988877655442 112223355764 69
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhhcC--CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 137 KADMVDDEELLELVEIEIRELLNKYE--FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 137 K~D~~~~~~~~~~i~~~~~~~l~~~~--~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
|+|+...+... .+++..+.... ...|..|++.+||.++ .|+++|++++.++
T Consensus 176 KaD~~gA~~~~----~~l~~~l~l~~~~~~~W~ppV~~tsA~~~----------~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 176 KADRPGADRTV----RDLRSMLHLLREREDGWRPPVLKTSALEG----------EGIDELWEAIDEH 228 (266)
T ss_dssp --SHHHHHHHH----HHHHHHHHHCSTSCTSB--EEEEEBTTTT----------BSHHHHHHHHHHH
T ss_pred CCChHHHHHHH----HHHHHHHhhccccccCCCCCEEEEEeCCC----------CCHHHHHHHHHHH
Confidence 99965554333 34555554332 2335789999999987 6899999998764
No 301
>KOG0097|consensus
Probab=99.30 E-value=5.8e-11 Score=93.69 Aligned_cols=142 Identities=20% Similarity=0.208 Sum_probs=96.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADY 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~ 88 (396)
..++-.++|..|+|||.|+.+++.... |-..++ .+.++.....++.. .-.+.+|||+|+++|
T Consensus 10 yifkyiiigdmgvgkscllhqftekkf------------madcph----tigvefgtriievsgqkiklqiwdtagqerf 73 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKF------------MADCPH----TIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 73 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHH------------hhcCCc----ccceecceeEEEecCcEEEEEEeecccHHHH
Confidence 467889999999999999999986531 111111 22233333344444 345689999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHH----HHHHcCCC--eEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPMPQTREHIL----LARQVGVP--YIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~----~~~~~~ip--~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
..-+.++.+.+.++++|.|.+. ..|-.|+. -++.+--| .++++-||.|+.+..+ ..-++.+.+.++.+
T Consensus 74 ravtrsyyrgaagalmvyditr---rstynhlsswl~dar~ltnpnt~i~lignkadle~qrd---v~yeeak~faeeng 147 (215)
T KOG0097|consen 74 RAVTRSYYRGAAGALMVYDITR---RSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRD---VTYEEAKEFAEENG 147 (215)
T ss_pred HHHHHHHhccccceeEEEEehh---hhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhccc---CcHHHHHHHHhhcC
Confidence 9999999999999999999986 33444543 33444333 3444569999865321 11124566777766
Q ss_pred CCCCCCeEEEecccccc
Q psy15217 163 FPGNDIPIIKGSAKLAL 179 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~ 179 (396)
+ -|+.+||++|.
T Consensus 148 l-----~fle~saktg~ 159 (215)
T KOG0097|consen 148 L-----MFLEASAKTGQ 159 (215)
T ss_pred e-----EEEEecccccC
Confidence 5 59999999984
No 302
>KOG0088|consensus
Probab=99.30 E-value=2.3e-11 Score=97.89 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=102.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
.-.++++++|.-=+|||+|+-+....... +.|-. .-..+......+++.....+.||||+|+++|-
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn------------~kHls--TlQASF~~kk~n~ed~ra~L~IWDTAGQErfH 76 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFN------------CKHLS--TLQASFQNKKVNVEDCRADLHIWDTAGQERFH 76 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcc------------hhhHH--HHHHHHhhcccccccceeeeeeeeccchHhhh
Confidence 45689999999999999999887643210 11100 00000001112233333457899999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCC-CChhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADG-PMPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g-~~~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
..-.-+.+.+|+++||.|.++. .+...+.+...++.+ .+. +++|-||+|+.... .....+...+....|
T Consensus 77 ALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~-l~IVGNKiDLEeeR---~Vt~qeAe~YAesvG--- 149 (218)
T KOG0088|consen 77 ALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIE-LLIVGNKIDLEEER---QVTRQEAEAYAESVG--- 149 (218)
T ss_pred ccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeE-EEEecCcccHHHhh---hhhHHHHHHHHHhhc---
Confidence 8877788999999999999873 344455555555543 344 44567999986431 122234556666555
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
..++.+||+.+ .++.+|++.|...
T Consensus 150 --A~y~eTSAk~N----------~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 150 --ALYMETSAKDN----------VGISELFESLTAK 173 (218)
T ss_pred --hhheecccccc----------cCHHHHHHHHHHH
Confidence 34889999986 5888888877653
No 303
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.29 E-value=6.3e-11 Score=88.55 Aligned_cols=79 Identities=18% Similarity=0.355 Sum_probs=70.9
Q ss_pred EEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCC-ceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCe
Q psy15217 215 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD-TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQ 293 (396)
Q Consensus 215 ~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~-~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~ 293 (396)
..|.++|++++.|+++.|+|.+|.+++|+.+.++|.+. ....+|+|++.+++.+++|.+|+.|++.|++++ ++++||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence 56889999888899999999999999999999998542 156799999999999999999999999999876 999999
Q ss_pred EE
Q psy15217 294 VL 295 (396)
Q Consensus 294 vl 295 (396)
+|
T Consensus 81 vi 82 (84)
T cd03692 81 II 82 (84)
T ss_pred EE
Confidence 87
No 304
>KOG0081|consensus
Probab=99.26 E-value=9.4e-12 Score=100.20 Aligned_cols=145 Identities=20% Similarity=0.213 Sum_probs=96.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEe--eeeEEeeC---------CeeEEEE
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT--AHIEYETK---------ARHYAHV 80 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~~~---------~~~~~ii 80 (396)
.+++..+|..|+||||++.+.+...- ...+.. .+.|+. ....+... ..++.+|
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F---~~qFIs-------------TVGIDFreKrvvY~s~gp~g~gr~~rihLQlW 72 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKF---NTQFIS-------------TVGIDFREKRVVYNSSGPGGGGRGQRIHLQLW 72 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcc---cceeEE-------------EeecccccceEEEeccCCCCCCcceEEEEeee
Confidence 46788899999999999987764311 011100 011111 11112111 1356799
Q ss_pred ecCChhhhHHHHHhhhhcCCEEEEEEecCC-CCChhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHH
Q psy15217 81 DCPGHADYIKNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRE 156 (396)
Q Consensus 81 DtpG~~~~~~~~~~~~~~~d~~llVvda~~-g~~~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~ 156 (396)
||+|+++|...+....+.|=+.+|+.|-+. ..+-.++.++..+... .-|.|+++-||+|+.+.... -..+...
T Consensus 73 DTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~V---s~~qa~~ 149 (219)
T KOG0081|consen 73 DTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVV---SEDQAAA 149 (219)
T ss_pred ccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhh---hHHHHHH
Confidence 999999999999999999999999999876 2333345555555443 56889999999999765322 2235666
Q ss_pred HHhhcCCCCCCCeEEEeccccccc
Q psy15217 157 LLNKYEFPGNDIPIIKGSAKLALE 180 (396)
Q Consensus 157 ~l~~~~~~~~~~~~i~~Sa~~g~~ 180 (396)
+..+++ +|++..||-+|.|
T Consensus 150 La~kyg-----lPYfETSA~tg~N 168 (219)
T KOG0081|consen 150 LADKYG-----LPYFETSACTGTN 168 (219)
T ss_pred HHHHhC-----CCeeeeccccCcC
Confidence 777776 5899999999843
No 305
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.26 E-value=8.2e-11 Score=110.90 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=93.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh----
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH---- 85 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~---- 85 (396)
..+++|+|+|.+|+|||||+|+|.+...+..+. +... .. ..|.+...+.. ....++++||.||.
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~a-A~tG------v~----etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~ 100 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGA-APTG------VV----ETTMEPTPYPH-PKFPNVTLWDLPGIGTPN 100 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS---SS------SH----SCCTS-EEEE--SS-TTEEEEEE--GGGSS
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCc-CCCC------CC----cCCCCCeeCCC-CCCCCCeEEeCCCCCCCC
Confidence 457999999999999999999997643322111 1100 00 11222222221 12346999999994
Q ss_pred ---hhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC------------CHHHHHHHH
Q psy15217 86 ---ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV------------DDEELLELV 150 (396)
Q Consensus 86 ---~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~------------~~~~~~~~i 150 (396)
++|+..+ .+...|..|++.+.. ........+..+..+|.|..+ |-||+|.. +.++..+.+
T Consensus 101 f~~~~Yl~~~--~~~~yD~fiii~s~r--f~~ndv~La~~i~~~gK~fyf-VRTKvD~Dl~~~~~~~p~~f~~e~~L~~I 175 (376)
T PF05049_consen 101 FPPEEYLKEV--KFYRYDFFIIISSER--FTENDVQLAKEIQRMGKKFYF-VRTKVDSDLYNERRRKPRTFNEEKLLQEI 175 (376)
T ss_dssp --HHHHHHHT--TGGG-SEEEEEESSS----HHHHHHHHHHHHTT-EEEE-EE--HHHHHHHHHCC-STT--HHTHHHHH
T ss_pred CCHHHHHHHc--cccccCEEEEEeCCC--CchhhHHHHHHHHHcCCcEEE-EEecccccHhhhhccCCcccCHHHHHHHH
Confidence 4455544 356778766655532 334455556667778989665 57999951 123455667
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC
Q psy15217 151 EIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR 207 (396)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~ 207 (396)
.+...+-|++.+. ...+++.+|+..-. .-.+..|.+.|...+|...+
T Consensus 176 R~~c~~~L~k~gv--~~P~VFLVS~~dl~--------~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 176 RENCLENLQKAGV--SEPQVFLVSSFDLS--------KYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HHHHHHHHHCTT---SS--EEEB-TTTTT--------STTHHHHHHHHHHHS-GGGH
T ss_pred HHHHHHHHHHcCC--CcCceEEEeCCCcc--------cCChHHHHHHHHHHhHHHHH
Confidence 7777777777776 35679999997521 12577888888887775543
No 306
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.25 E-value=4.4e-10 Score=101.73 Aligned_cols=121 Identities=12% Similarity=0.068 Sum_probs=75.5
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
.....++|+++|.+|+|||||+|+|++........ -.+.|..........++..+.+|||||..+
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~---------------~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~ 91 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSA---------------FQSETLRVREVSGTVDGFKLNIIDTPGLLE 91 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC---------------CCCceEEEEEEEEEECCeEEEEEECCCcCc
Confidence 34567999999999999999999999753211110 113455555555566778899999999654
Q ss_pred hH------HH----HHhhhh--cCCEEEEEEecCC-CCChhHHHHHHHHHH-cCC---CeEEEEEeccCCCCH
Q psy15217 88 YI------KN----MITGAA--QMDGAILVCSAAD-GPMPQTREHILLARQ-VGV---PYIVVFLNKADMVDD 143 (396)
Q Consensus 88 ~~------~~----~~~~~~--~~d~~llVvda~~-g~~~qt~e~l~~~~~-~~i---p~iIvviNK~D~~~~ 143 (396)
.. .. ....+. ..|.+++|...+. .......+.+..+.. +|. .++++++||+|...+
T Consensus 92 ~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 92 SVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 41 11 111222 5788888875553 233333444444433 342 357778999998754
No 307
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.25 E-value=1.7e-10 Score=105.20 Aligned_cols=153 Identities=20% Similarity=0.178 Sum_probs=92.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEe-eCCeeEEEEecCCh------
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE-TKARHYAHVDCPGH------ 85 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~~~iiDtpG~------ 85 (396)
-.|+++|-+++|||||+++++..........+ +|.....-... .....+++-|.||-
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpF----------------TTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~ 223 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPF----------------TTLVPNLGVVRVDGGESFVVADIPGLIEGASE 223 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCcc----------------ccccCcccEEEecCCCcEEEecCccccccccc
Confidence 36799999999999999999987655543332 23322222222 35567999999992
Q ss_pred -----hhhHHHHHhhhhcCCEEEEEEecCCCCC----hhHHHHHHHH-----HHcCCCeEEEEEeccCCCCHHHHHHHHH
Q psy15217 86 -----ADYIKNMITGAAQMDGAILVCSAADGPM----PQTREHILLA-----RQVGVPYIVVFLNKADMVDDEELLELVE 151 (396)
Q Consensus 86 -----~~~~~~~~~~~~~~d~~llVvda~~g~~----~qt~e~l~~~-----~~~~ip~iIvviNK~D~~~~~~~~~~i~ 151 (396)
.+|++. +..+.+.+.|||.+.... .+-......+ ...+.|.+| |+||||+...++..+..+
T Consensus 224 G~GLG~~FLrH----IERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~iv-v~NKiD~~~~~e~~~~~~ 298 (369)
T COG0536 224 GVGLGLRFLRH----IERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIV-VLNKIDLPLDEEELEELK 298 (369)
T ss_pred CCCccHHHHHH----HHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEE-EEeccCCCcCHHHHHHHH
Confidence 344444 445899999999986321 1111111112 123667565 679999766545444443
Q ss_pred HHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 152 IEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+.+. +..++ .++.++||.++ .++.+|+..+.+.+.
T Consensus 299 ~~l~---~~~~~----~~~~~ISa~t~----------~g~~~L~~~~~~~l~ 333 (369)
T COG0536 299 KALA---EALGW----EVFYLISALTR----------EGLDELLRALAELLE 333 (369)
T ss_pred HHHH---HhcCC----Ccceeeehhcc----------cCHHHHHHHHHHHHH
Confidence 3333 23333 22333999997 578888877766543
No 308
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.23 E-value=1.4e-10 Score=103.99 Aligned_cols=177 Identities=20% Similarity=0.157 Sum_probs=107.1
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccc----------ccccc-CCC---hhHhhcCceEEeee------
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAK----------SYDQI-DAA---PEEKARGITINTAH------ 67 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~----------~~~~~-d~~---~~e~~~g~t~~~~~------ 67 (396)
..-....|+|.|.+|+|||||++.|.....+.+...+. ....| |+. ......++-+-+..
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG 126 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG 126 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence 33456799999999999999999998776555421110 00011 111 11111222222110
Q ss_pred ----------eEEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEec
Q psy15217 68 ----------IEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNK 137 (396)
Q Consensus 68 ----------~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK 137 (396)
..++-.++.+.|+.|-|...-- ..-...+|..++|.-+..|..-|.. ..-.+.+-.++ ||||
T Consensus 127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~i----K~GimEiaDi~-vINK 198 (323)
T COG1703 127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGI----KAGIMEIADII-VINK 198 (323)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHH----Hhhhhhhhhee-eEec
Confidence 0123357889999999954321 1223458999999888777766654 33344556676 5799
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 138 ADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 138 ~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+|....+..+..+...+...-....-++|..|++.+||.+| +|+.+|++++.++.
T Consensus 199 aD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g----------~Gi~~L~~ai~~h~ 253 (323)
T COG1703 199 ADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEG----------EGIDELWDAIEDHR 253 (323)
T ss_pred cChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccC----------CCHHHHHHHHHHHH
Confidence 99776654444444333322222233567899999999997 58899999887754
No 309
>KOG1532|consensus
Probab=99.23 E-value=2.4e-10 Score=100.80 Aligned_cols=177 Identities=18% Similarity=0.275 Sum_probs=101.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEee-----------------------
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA----------------------- 66 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~----------------------- 66 (396)
+.+..|.++|..||||||++.+|.....+....... ..+|..-.+...+..+++.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYv--iNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYV--INLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeE--EeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 456789999999999999999998776655432211 1233322222222222211
Q ss_pred --ee--EE---------eeCCeeEEEEecCChhhhH--------HHHHhhhhcCCEEEEEEecCCCCChhH--HHHHHHH
Q psy15217 67 --HI--EY---------ETKARHYAHVDCPGHADYI--------KNMITGAAQMDGAILVCSAADGPMPQT--REHILLA 123 (396)
Q Consensus 67 --~~--~~---------~~~~~~~~iiDtpG~~~~~--------~~~~~~~~~~d~~llVvda~~g~~~qt--~e~l~~~ 123 (396)
.+ .| ..+...+.+|||||+-.-. -+-..+.+.+-++++|||....-.+.| ...++.|
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence 00 00 1123568999999964432 122222345678999999877544443 2223333
Q ss_pred ---HHcCCCeEEEEEeccCCCCHHHHHHH------HHHHHHH---------------HHhhcCCCCCCCeEEEecccccc
Q psy15217 124 ---RQVGVPYIVVFLNKADMVDDEELLEL------VEIEIRE---------------LLNKYEFPGNDIPIIKGSAKLAL 179 (396)
Q Consensus 124 ---~~~~ip~iIvviNK~D~~~~~~~~~~------i~~~~~~---------------~l~~~~~~~~~~~~i~~Sa~~g~ 179 (396)
....+| +||+.||+|..+.+-..++ ..+.+.+ .|.++ + .....+-+|+.+|
T Consensus 175 Silyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeF-Y--~~lrtv~VSs~tG- 249 (366)
T KOG1532|consen 175 SILYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEF-Y--RSLRTVGVSSVTG- 249 (366)
T ss_pred HHHHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHH-H--hhCceEEEecccC-
Confidence 344889 5556799999875322222 2211211 11111 1 3567999999998
Q ss_pred cCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 180 EGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 180 ~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.|+++++.++.+.+
T Consensus 250 ---------~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 250 ---------EGFDDFFTAVDESV 263 (366)
T ss_pred ---------CcHHHHHHHHHHHH
Confidence 58888888876643
No 310
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.21 E-value=1.2e-10 Score=105.18 Aligned_cols=85 Identities=20% Similarity=0.185 Sum_probs=64.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh--
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY-- 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-- 88 (396)
..-.++++|.+++|||||++.|++...+.+...+ +|.......+++++-.+.++|+||--.-
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~F----------------TTl~~VPG~l~Y~ga~IQild~Pgii~gas 125 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPF----------------TTLEPVPGMLEYKGAQIQLLDLPGIIEGAS 125 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCc----------------eecccccceEeecCceEEEEcCcccccCcc
Confidence 4578999999999999999999987655433222 3445555667888999999999983211
Q ss_pred -----HHHHHhhhhcCCEEEEEEecCCC
Q psy15217 89 -----IKNMITGAAQMDGAILVCSAADG 111 (396)
Q Consensus 89 -----~~~~~~~~~~~d~~llVvda~~g 111 (396)
-+..++.++.||.+++|+|+.+.
T Consensus 126 ~g~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 126 SGRGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred cCCCCcceeeeeeccCCEEEEEEecCCC
Confidence 24566778899999999999863
No 311
>PTZ00099 rab6; Provisional
Probab=99.20 E-value=1.8e-10 Score=99.10 Aligned_cols=112 Identities=20% Similarity=0.159 Sum_probs=76.9
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH-c--CCCeEEEEEeccCCCCHHHHHHH
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ-V--GVPYIVVFLNKADMVDDEELLEL 149 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~-~--~ip~iIvviNK~D~~~~~~~~~~ 149 (396)
...+.||||||+++|...+...+..+|++|+|+|.++.. +....+++..+.. . ++| ++++.||+|+.+.....
T Consensus 28 ~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v~-- 104 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVI-IALVGNKTDLGDLRKVT-- 104 (176)
T ss_pred EEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCCC--
Confidence 456789999999999988888889999999999998732 2223333333322 2 445 56678999986421110
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 150 VEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 150 i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
..+...+.+.++ .+++++||++| .++.+++++|.+.+|.
T Consensus 105 -~~e~~~~~~~~~-----~~~~e~SAk~g----------~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 105 -YEEGMQKAQEYN-----TMFHETSAKAG----------HNIKVLFKKIAAKLPN 143 (176)
T ss_pred -HHHHHHHHHHcC-----CEEEEEECCCC----------CCHHHHHHHHHHHHHh
Confidence 112233333332 46899999998 5899999999887764
No 312
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.19 E-value=9.6e-10 Score=102.94 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=50.6
Q ss_pred EEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEee--eeEE---------------------e
Q psy15217 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA--HIEY---------------------E 71 (396)
Q Consensus 15 i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~---------------------~ 71 (396)
|+++|.+++|||||+++|++......... ..|++.. ...+ .
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~p----------------ftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~ 64 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYP----------------FTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCID 64 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCC----------------CccccceeEEEEEecCCCchhhhhhhccccccccc
Confidence 58999999999999999997532111100 1111111 0110 0
Q ss_pred -eCCeeEEEEecCCh----hhhH---HHHHhhhhcCCEEEEEEecCC
Q psy15217 72 -TKARHYAHVDCPGH----ADYI---KNMITGAAQMDGAILVCSAAD 110 (396)
Q Consensus 72 -~~~~~~~iiDtpG~----~~~~---~~~~~~~~~~d~~llVvda~~ 110 (396)
.....+.+|||||. +++. ...+..++.+|++++|+|+..
T Consensus 65 ~~~~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 65 GKRYVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CcCcceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 12246899999996 3332 345566889999999999973
No 313
>KOG4252|consensus
Probab=99.19 E-value=1.8e-11 Score=100.59 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=97.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
..++++|+|+-++||||++.+.+.+.-.++...... .|.+ | .......++...-+|||+|+++|-.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIg---vdfl--e---------rqi~v~~Edvr~mlWdtagqeEfDa 84 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIG---VDFL--E---------RQIKVLIEDVRSMLWDTAGQEEFDA 84 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccc---hhhh--h---------HHHHhhHHHHHHHHHHhccchhHHH
Confidence 568999999999999999999986543332211111 1111 0 0111223345567899999999999
Q ss_pred HHHhhhhcCCEEEEEEecCC-CCChhHHHHHHHHHH--cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~-g~~~qt~e~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 167 (396)
-+..+.++|.+.+||.+.++ ..+..+.++-..... -.||.++ +-||+|+++...... .+++.+.+.+.
T Consensus 85 ItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~-vqNKIDlveds~~~~---~evE~lak~l~----- 155 (246)
T KOG4252|consen 85 ITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVF-VQNKIDLVEDSQMDK---GEVEGLAKKLH----- 155 (246)
T ss_pred HHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEE-eeccchhhHhhhcch---HHHHHHHHHhh-----
Confidence 98899999999999999987 345556655544433 3789665 579999987633222 23444444443
Q ss_pred CeEEEecccccc
Q psy15217 168 IPIIKGSAKLAL 179 (396)
Q Consensus 168 ~~~i~~Sa~~g~ 179 (396)
..++.+|++...
T Consensus 156 ~RlyRtSvked~ 167 (246)
T KOG4252|consen 156 KRLYRTSVKEDF 167 (246)
T ss_pred hhhhhhhhhhhh
Confidence 458888998864
No 314
>KOG0074|consensus
Probab=99.17 E-value=2.4e-10 Score=90.48 Aligned_cols=147 Identities=22% Similarity=0.213 Sum_probs=96.9
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC-eeEEEEecCChh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHA 86 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpG~~ 86 (396)
++...++|.++|-.+|||||++.+|........ ..|-..+....++.+ .++++||..|+.
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hl-------------------tpT~GFn~k~v~~~g~f~LnvwDiGGqr 73 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHL-------------------TPTNGFNTKKVEYDGTFHLNVWDIGGQR 73 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhc-------------------cccCCcceEEEeecCcEEEEEEecCCcc
Confidence 346789999999999999999999965321110 111122333444444 789999999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCC-CCChhHHHHHHHH----HHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAAD-GPMPQTREHILLA----RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~-g~~~qt~e~l~~~----~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
....-+..++...|..|+|||+++ ..+..+-+|+..+ +...+|..|. .||.|+..... .+ ++..-+.-.
T Consensus 74 ~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIf-ankQdlltaa~-~e----eia~klnl~ 147 (185)
T KOG0074|consen 74 GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIF-ANKQDLLTAAK-VE----EIALKLNLA 147 (185)
T ss_pred ccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeeh-hhhhHHHhhcc-hH----HHHHhcchh
Confidence 999999999999999999999876 3344455554333 2346887775 59999876521 11 122222222
Q ss_pred CCCCCCCeEEEecccccc
Q psy15217 162 EFPGNDIPIIKGSAKLAL 179 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~ 179 (396)
++......+-.+||+.+.
T Consensus 148 ~lrdRswhIq~csals~e 165 (185)
T KOG0074|consen 148 GLRDRSWHIQECSALSLE 165 (185)
T ss_pred hhhhceEEeeeCcccccc
Confidence 232334567888998863
No 315
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.17 E-value=4.9e-10 Score=99.49 Aligned_cols=166 Identities=19% Similarity=0.254 Sum_probs=96.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh-------
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH------- 85 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~------- 85 (396)
++|+++|..|+||||++|.|++...-.... .....|..........+++.++++||||.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~--------------~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~ 66 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGS--------------SAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD 66 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--T--------------TTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeecc--------------ccCCcccccceeeeeecceEEEEEeCCCCCCCcccH
Confidence 589999999999999999998753211110 01123333334445678899999999993
Q ss_pred hhhHHHHHhh----hhcCCEEEEEEecCCCCChhHHHHHHHHHH-cC---CCeEEEEEeccCCCCHHHHHHHHH----HH
Q psy15217 86 ADYIKNMITG----AAQMDGAILVCSAADGPMPQTREHILLARQ-VG---VPYIVVFLNKADMVDDEELLELVE----IE 153 (396)
Q Consensus 86 ~~~~~~~~~~----~~~~d~~llVvda~~g~~~qt~e~l~~~~~-~~---ip~iIvviNK~D~~~~~~~~~~i~----~~ 153 (396)
++...++... ....|+++||+... .+....+..+..+.. +| .++.||+.|..|........+.+. ..
T Consensus 67 ~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~ 145 (212)
T PF04548_consen 67 EEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEA 145 (212)
T ss_dssp HHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchh
Confidence 2233333332 34689999999998 566666666655543 34 356777889999776533222222 34
Q ss_pred HHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 154 IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 154 ~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+..+++.++- .+...+..+.. .|.....+.+||+.+...+
T Consensus 146 l~~li~~c~~-----R~~~f~n~~~~----~~~~~~qv~~Ll~~ie~mv 185 (212)
T PF04548_consen 146 LQELIEKCGG-----RYHVFNNKTKD----KEKDESQVSELLEKIEEMV 185 (212)
T ss_dssp HHHHHHHTTT-----CEEECCTTHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhcCC-----EEEEEeccccc----hhhhHHHHHHHHHHHHHHH
Confidence 7778887763 36655555110 0000124667777776644
No 316
>KOG0072|consensus
Probab=99.16 E-value=5.9e-11 Score=94.18 Aligned_cols=158 Identities=18% Similarity=0.105 Sum_probs=104.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
...++.++|-.|+||+|++-+|--...... -.|+.......++.+-.+.+||..|+....+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvtt-------------------kPtigfnve~v~yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTT-------------------KPTIGFNVETVPYKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccccc-------------------CCCCCcCccccccccccceeeEccCcccccH
Confidence 568899999999999998877643221111 1233334444555677789999999999999
Q ss_pred HHHhhhhcCCEEEEEEecCCCCC-h-hHHHHHHHH--HHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPM-P-QTREHILLA--RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~-~-qt~e~l~~~--~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.+..+....|++|+|||..+-.. . ...|...++ ..+.-..++|+.||+|....... .++...|..-.+...
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~-----~E~~~~L~l~~Lk~r 152 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTR-----SEVLKMLGLQKLKDR 152 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhH-----HHHHHHhChHHHhhh
Confidence 99999999999999999987221 1 112222222 23333557778899998765221 122222222122224
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+.++..||.+| +|++..++||.+-+
T Consensus 153 ~~~Iv~tSA~kg----------~Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 153 IWQIVKTSAVKG----------EGLDPAMDWLQRPL 178 (182)
T ss_pred eeEEEeeccccc----------cCCcHHHHHHHHHH
Confidence 578999999997 58889999987644
No 317
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.14 E-value=2.7e-10 Score=88.40 Aligned_cols=137 Identities=24% Similarity=0.268 Sum_probs=89.3
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC----hhhhH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG----HADYI 89 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG----~~~~~ 89 (396)
+++++|.+|+|||||++.|.+....- .-|. ..++.++ -.||||| |..+-
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly--------------------kKTQ-----Ave~~d~--~~IDTPGEy~~~~~~Y 55 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY--------------------KKTQ-----AVEFNDK--GDIDTPGEYFEHPRWY 55 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh--------------------cccc-----eeeccCc--cccCCchhhhhhhHHH
Confidence 68999999999999999997542100 0111 1122111 3599999 55554
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 169 (396)
...+.....+|.+++|-+++++.. +---.++.....| .|=+++|.|+....+ .+ ..+.+|.+.|- -|
T Consensus 56 ~aL~tt~~dadvi~~v~~and~~s---~f~p~f~~~~~k~-vIgvVTK~DLaed~d-I~----~~~~~L~eaGa----~~ 122 (148)
T COG4917 56 HALITTLQDADVIIYVHAANDPES---RFPPGFLDIGVKK-VIGVVTKADLAEDAD-IS----LVKRWLREAGA----EP 122 (148)
T ss_pred HHHHHHhhccceeeeeecccCccc---cCCcccccccccc-eEEEEecccccchHh-HH----HHHHHHHHcCC----cc
Confidence 445555668999999999998432 1111233333445 555679999996422 22 34566666664 57
Q ss_pred EEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 170 ~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
++.+|+.+. .|+++|+++|..
T Consensus 123 IF~~s~~d~----------~gv~~l~~~L~~ 143 (148)
T COG4917 123 IFETSAVDN----------QGVEELVDYLAS 143 (148)
T ss_pred eEEEeccCc----------ccHHHHHHHHHh
Confidence 999999875 589999998875
No 318
>KOG0395|consensus
Probab=99.14 E-value=3.9e-10 Score=98.35 Aligned_cols=155 Identities=25% Similarity=0.270 Sum_probs=99.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEE-eee--eEEeeCCeeEEEEecCChhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN-TAH--IEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~-~~~--~~~~~~~~~~~iiDtpG~~~ 87 (396)
...+|+++|..|+|||+|+-++.+..- .+. +-.|++ ... ...+.+...+.|+||+|.++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f------------~~~------y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~ 63 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRF------------VED------YDPTIEDSYRKELTVDGEVCMLEILDTAGQEE 63 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccc------------ccc------cCCCccccceEEEEECCEEEEEEEEcCCCccc
Confidence 357999999999999999998875321 111 112222 222 22333344567999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCC-CCCh---hHHHHHHHHHH-cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAAD-GPMP---QTREHILLARQ-VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~-g~~~---qt~e~l~~~~~-~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
|.......+..+|+.++|.+.++ ..+. +.++++...+. ..+| +++|.||+|+..... ...++...+...+
T Consensus 64 ~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~R~---V~~eeg~~la~~~- 138 (196)
T KOG0395|consen 64 FSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVP-IILVGNKCDLERERQ---VSEEEGKALARSW- 138 (196)
T ss_pred ChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhccc---cCHHHHHHHHHhc-
Confidence 99988888999999999999987 2222 33333322222 2467 556789999976311 1122344444433
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.++++.+||+.. .++++++..|...+
T Consensus 139 ----~~~f~E~Sak~~----------~~v~~~F~~L~r~~ 164 (196)
T KOG0395|consen 139 ----GCAFIETSAKLN----------YNVDEVFYELVREI 164 (196)
T ss_pred ----CCcEEEeeccCC----------cCHHHHHHHHHHHH
Confidence 467999999986 36777777766543
No 319
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.10 E-value=4.5e-09 Score=98.33 Aligned_cols=173 Identities=20% Similarity=0.174 Sum_probs=93.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCcccc----------cccc-CCChhH---hhcCceEEeeee-------
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKS----------YDQI-DAAPEE---KARGITINTAHI------- 68 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~----------~~~~-d~~~~e---~~~g~t~~~~~~------- 68 (396)
.+...|+++|.+|+|||||+..|.......+...... ...+ |+.... ...+..+.....
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 4567899999999999999999987654432111000 0000 110000 001111111000
Q ss_pred ---------EEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccC
Q psy15217 69 ---------EYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 139 (396)
Q Consensus 69 ---------~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D 139 (396)
.++..++.+.|+||||... .....+..+|.++++.+...+. ..+... -...++|.++ ++||+|
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~---el~~~~-~~l~~~~~iv-v~NK~D 183 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGD---DLQGIK-AGLMEIADIY-VVNKAD 183 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccH---HHHHHH-HHHhhhccEE-EEEccc
Confidence 1233568899999999542 2223455689998887654332 111111 1124677655 679999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcC--CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 140 MVDDEELLELVEIEIRELLNKYE--FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 140 ~~~~~~~~~~i~~~~~~~l~~~~--~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
+.+.... ......+...+..+. ...+..|++++||.++ .++.+|++++...
T Consensus 184 l~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g----------~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 184 GEGATNV-TIARLMLALALEEIRRREDGWRPPVLTTSAVEG----------RGIDELWDAIEEH 236 (300)
T ss_pred ccchhHH-HHHHHHHHHHHhhccccccCCCCCEEEEEccCC----------CCHHHHHHHHHHH
Confidence 9876331 111111211111111 1123457999999997 5888888888764
No 320
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.09 E-value=3.8e-09 Score=101.89 Aligned_cols=81 Identities=21% Similarity=0.186 Sum_probs=52.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEE----------------------
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY---------------------- 70 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~---------------------- 70 (396)
++|+++|.+++|||||+++|++......... +.|++......
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~----------------f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~ 65 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYP----------------FTTIDPNVGVAYVRVECPCKELGVKCNPRNGKC 65 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCC----------------CcceeeeeeeeeeccCCchhhhhhhhccccccc
Confidence 5899999999999999999997533211100 12222111100
Q ss_pred -e-eCCeeEEEEecCCh----hh---hHHHHHhhhhcCCEEEEEEecC
Q psy15217 71 -E-TKARHYAHVDCPGH----AD---YIKNMITGAAQMDGAILVCSAA 109 (396)
Q Consensus 71 -~-~~~~~~~iiDtpG~----~~---~~~~~~~~~~~~d~~llVvda~ 109 (396)
. .....+.|+|+||. .+ .....+..++.+|++++|+|+.
T Consensus 66 ~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 66 IDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 0 11235789999993 22 3335556688999999999997
No 321
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.07 E-value=7.4e-10 Score=94.58 Aligned_cols=66 Identities=21% Similarity=0.159 Sum_probs=48.3
Q ss_pred CCeeEEEEecCChhh----hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEecc
Q psy15217 73 KARHYAHVDCPGHAD----YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKA 138 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~----~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~ 138 (396)
....+.|+||||... ....+...+..+|++++|+++++....+..+.+........+.+++|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 345689999999533 224455566889999999999997777777777666666666688888985
No 322
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.06 E-value=2.2e-09 Score=78.37 Aligned_cols=70 Identities=26% Similarity=0.411 Sum_probs=62.2
Q ss_pred ceEEEEEEEeeEEecCCEEEEeecCCce---eEEEEEEEecceeeCeeecCCeEEEEecccCccC-CCCCeEEe
Q psy15217 227 GTVVTGRVERGIVRVGEELEIIGIKDTV---KTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKRED-VERGQVLA 296 (396)
Q Consensus 227 G~v~~g~v~~G~l~~g~~v~~~p~~~~~---~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~-i~~G~vl~ 296 (396)
|++++|+|.+|+|++||+|.+.|..... ..+|++|+.++....++.+|+.+++.+......+ +++||+||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 7899999999999999999998733323 4999999999999999999999999998878888 89999986
No 323
>KOG0083|consensus
Probab=99.06 E-value=7.4e-11 Score=92.26 Aligned_cols=140 Identities=16% Similarity=0.206 Sum_probs=85.4
Q ss_pred EEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhhhHHHHHh
Q psy15217 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYIKNMIT 94 (396)
Q Consensus 17 i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~ 94 (396)
++|..+.|||.|+-++-...--. +.+ .+.+.|+.....+..+ ...+.+|||+|+++|.+-+..
T Consensus 2 llgds~~gktcllir~kdgafl~--~~f-------------istvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~a 66 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLA--GNF-------------ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHA 66 (192)
T ss_pred ccccCccCceEEEEEeccCceec--Cce-------------eeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHh
Confidence 57999999999875543211000 000 0012223222233333 345689999999999999999
Q ss_pred hhhcCCEEEEEEecCC-CCChhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15217 95 GAAQMDGAILVCSAAD-GPMPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 170 (396)
Q Consensus 95 ~~~~~d~~llVvda~~-g~~~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~ 170 (396)
+.+.+|+.+|+.|..+ ..+...+.++..+... .+...+ +-||+|+...... -.++-+.+.+.++ +||
T Consensus 67 yyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~l-lgnk~d~a~er~v---~~ddg~kla~~y~-----ipf 137 (192)
T KOG0083|consen 67 YYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALML-LGNKCDLAHERAV---KRDDGEKLAEAYG-----IPF 137 (192)
T ss_pred hhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhh-hccccccchhhcc---ccchHHHHHHHHC-----CCc
Confidence 9999999999999876 3333333333333332 233234 4699999764111 1123445555555 689
Q ss_pred EEeccccccc
Q psy15217 171 IKGSAKLALE 180 (396)
Q Consensus 171 i~~Sa~~g~~ 180 (396)
...||++|.|
T Consensus 138 metsaktg~n 147 (192)
T KOG0083|consen 138 METSAKTGFN 147 (192)
T ss_pred eecccccccc
Confidence 9999999964
No 324
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.05 E-value=2.8e-09 Score=94.35 Aligned_cols=167 Identities=14% Similarity=0.106 Sum_probs=91.3
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCcccccc---ccCCChhHhhcCceE-Eeeee---------------E
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYD---QIDAAPEEKARGITI-NTAHI---------------E 69 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~---~~d~~~~e~~~g~t~-~~~~~---------------~ 69 (396)
+....+|+++|+.|+|||||+++|+............... ..|.... +..|..+ ..... .
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~-~~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERL-RKYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHH-HHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 3467899999999999999999998764321110000000 0121111 1222211 10000 0
Q ss_pred EeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHH-HHH
Q psy15217 70 YETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEE-LLE 148 (396)
Q Consensus 70 ~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~-~~~ 148 (396)
....+..+.|++|.|.-... .......+..+.|+|+.++...+.. .....+.+.++ ++||+|+.+... ..+
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~~----~~~~~~~a~ii-v~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPLK----YPGMFKEADLI-VINKADLAEAVGFDVE 169 (207)
T ss_pred hccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhhh----hHhHHhhCCEE-EEEHHHccccchhhHH
Confidence 01123578899999921110 1111245667789999875543221 12234556555 679999986411 122
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 149 LVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 149 ~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
. +.+.++... ...|++++||+++ .|+.++++++.++
T Consensus 170 ~----~~~~l~~~~---~~~~i~~~Sa~~g----------~gv~~l~~~i~~~ 205 (207)
T TIGR00073 170 K----MKADAKKIN---PEAEIILMSLKTG----------EGLDEWLEFLEGQ 205 (207)
T ss_pred H----HHHHHHHhC---CCCCEEEEECCCC----------CCHHHHHHHHHHh
Confidence 2 222333332 2478999999997 6899999998764
No 325
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.04 E-value=6.3e-09 Score=95.73 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=70.4
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
.....++|+++|..|+||||++|+|++........ .. +.+..........++..+.+|||||..+
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~----------f~-----s~t~~~~~~~~~~~G~~l~VIDTPGL~d 98 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSA----------FQ-----SEGLRPMMVSRTRAGFTLNIIDTPGLIE 98 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccC----------CC-----CcceeEEEEEEEECCeEEEEEECCCCCc
Confidence 34567899999999999999999999753221110 00 1111111222334678999999999654
Q ss_pred h--HHH-HHhhh------hcCCEEEEEEecCC-CCChhHHHHHHHHHHc-C---CCeEEEEEeccCCCC
Q psy15217 88 Y--IKN-MITGA------AQMDGAILVCSAAD-GPMPQTREHILLARQV-G---VPYIVVFLNKADMVD 142 (396)
Q Consensus 88 ~--~~~-~~~~~------~~~d~~llVvda~~-g~~~qt~e~l~~~~~~-~---ip~iIvviNK~D~~~ 142 (396)
. ... ....+ ..+|++++|...+. ......+..+..+... | -.+.||++|+.|..+
T Consensus 99 ~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 99 GGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 3 111 11111 25899999965433 2333334444433322 2 245777889999774
No 326
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.04 E-value=3.5e-09 Score=99.72 Aligned_cols=155 Identities=21% Similarity=0.313 Sum_probs=92.9
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhh----hhcCCccccccccCCChhHhhcC---ceEEeee---eEEe-----e
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLS----KKFGGEAKSYDQIDAAPEEKARG---ITINTAH---IEYE-----T 72 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~----~~~~~~~~~~~~~d~~~~e~~~g---~t~~~~~---~~~~-----~ 72 (396)
+....+.|+++|++++|||||+++|++... +......+ ..|..+.. ..| +|.+..+ ...+ .
T Consensus 13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~R---a~DELpqs-~~GktItTTePkfvP~kAvEI~~~~~ 88 (492)
T TIGR02836 13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKER---AQDELPQS-AAGKTIMTTEPKFVPNEAVEININEG 88 (492)
T ss_pred HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhH---HHhccCcC-CCCCCcccCCCccccCcceEEeccCC
Confidence 445689999999999999999999997621 11111111 12222222 236 4444443 1122 1
Q ss_pred CCeeEEEEecCChhh--------hHH-----------------H----HHhhhh-cCCEEEEEE-ecC------CCCChh
Q psy15217 73 KARHYAHVDCPGHAD--------YIK-----------------N----MITGAA-QMDGAILVC-SAA------DGPMPQ 115 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~--------~~~-----------------~----~~~~~~-~~d~~llVv-da~------~g~~~q 115 (396)
-...+.++||+|..+ --+ . +...+. .+|.+++|. |++ ++....
T Consensus 89 ~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~a 168 (492)
T TIGR02836 89 TKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEA 168 (492)
T ss_pred CcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHH
Confidence 235789999999321 111 1 333344 789999999 886 456677
Q ss_pred HHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccc
Q psy15217 116 TREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKL 177 (396)
Q Consensus 116 t~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~ 177 (396)
..+.+..++..++|+++ ++||.|-..++ . ..+..++. .+ + .+|++++|...
T Consensus 169 Ee~~i~eLk~~~kPfii-vlN~~dp~~~e-t-~~l~~~l~---ek--y---~vpvl~v~c~~ 219 (492)
T TIGR02836 169 EERVIEELKELNKPFII-LLNSTHPYHPE-T-EALRQELE---EK--Y---DVPVLAMDVES 219 (492)
T ss_pred HHHHHHHHHhcCCCEEE-EEECcCCCCch-h-HHHHHHHH---HH--h---CCceEEEEHHH
Confidence 78888999999999555 68999943321 1 11111222 22 2 36788888765
No 327
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.04 E-value=4.5e-09 Score=77.89 Aligned_cols=82 Identities=33% Similarity=0.543 Sum_probs=71.4
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCC
Q psy15217 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERG 292 (396)
Q Consensus 213 ~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G 292 (396)
+++.|.+++..++.|.++.|+|.+|.|++||.+.+.|.......+|++|+.++.+++++.||+.+++.+... .+++.|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~--~~~~~g 78 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDK--DDIKIG 78 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEccc--cccCCC
Confidence 367899999999999999999999999999999998743446788999999999999999999999988643 389999
Q ss_pred eEEe
Q psy15217 293 QVLA 296 (396)
Q Consensus 293 ~vl~ 296 (396)
++++
T Consensus 79 ~~l~ 82 (83)
T cd01342 79 DTLT 82 (83)
T ss_pred CEec
Confidence 9886
No 328
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.03 E-value=2.5e-09 Score=90.52 Aligned_cols=164 Identities=14% Similarity=0.169 Sum_probs=91.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhh---cCce---EEeeeeE---------------E
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKA---RGIT---INTAHIE---------------Y 70 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~---~g~t---~~~~~~~---------------~ 70 (396)
.+.|.+.|++|||||||+.+++....+...-........-....++- .|.. +.+...+ .
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 48999999999999999999998776653322111111111111111 1111 1111000 0
Q ss_pred eeCCeeEEEEecCChhhhHHHHHhhhhcCC-EEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHH-HHH
Q psy15217 71 ETKARHYAHVDCPGHADYIKNMITGAAQMD-GAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEE-LLE 148 (396)
Q Consensus 71 ~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d-~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~-~~~ 148 (396)
......+.|+...| ... ...+ ....| .-++|+|..+|..---+-+=.+.+ ..++ +|||.|+.+.-. ..+
T Consensus 93 ~~~~~Dll~iEs~G--NL~-~~~s-p~L~d~~~v~VidvteGe~~P~K~gP~i~~----aDll-VInK~DLa~~v~~dle 163 (202)
T COG0378 93 DFPDLDLLFIESVG--NLV-CPFS-PDLGDHLRVVVIDVTEGEDIPRKGGPGIFK----ADLL-VINKTDLAPYVGADLE 163 (202)
T ss_pred cCCcCCEEEEecCc--cee-cccC-cchhhceEEEEEECCCCCCCcccCCCceeE----eeEE-EEehHHhHHHhCccHH
Confidence 11224688899988 111 1111 11244 899999999987532221111111 2355 579999987621 112
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 149 LVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 149 ~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
. +.+-.++.. .+.||+.+|+++| +|++++++++...
T Consensus 164 v----m~~da~~~n---p~~~ii~~n~ktg----------~G~~~~~~~i~~~ 199 (202)
T COG0378 164 V----MARDAKEVN---PEAPIIFTNLKTG----------EGLDEWLRFIEPQ 199 (202)
T ss_pred H----HHHHHHHhC---CCCCEEEEeCCCC----------cCHHHHHHHHHhh
Confidence 2 222333333 2579999999998 6999999988653
No 329
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.01 E-value=4.1e-09 Score=92.38 Aligned_cols=166 Identities=18% Similarity=0.226 Sum_probs=90.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhH--hhcCc-----eEEe----e-e--eEE-------
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEE--KARGI-----TINT----A-H--IEY------- 70 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e--~~~g~-----t~~~----~-~--~~~------- 70 (396)
+++|+++|..|+|||||+.+|++......+-.............+ ...+. .+.. . + ...
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLE 80 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHH
Confidence 368999999999999999999876433211100000000001111 11111 1000 0 0 000
Q ss_pred -------eeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 71 -------ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 71 -------~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
......++++++.|-. ...... ...+|.+++|+|+.++...+.. .........++ ++||+|+.+.
T Consensus 81 ~L~~l~~~~~~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~----~~~qi~~ad~~-~~~k~d~~~~ 152 (199)
T TIGR00101 81 AVAEMEARFPPLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK----GGPGITRSDLL-VINKIDLAPM 152 (199)
T ss_pred HHHHHHhcCCCCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh----hHhHhhhccEE-EEEhhhcccc
Confidence 1124568899999921 111111 1236889999999886553221 11223333455 5799999853
Q ss_pred -HHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 144 -EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 144 -~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
....+.+. +.++.++. ..+++++||++| .|++++++++.++.
T Consensus 153 ~~~~~~~~~----~~~~~~~~---~~~i~~~Sa~~g----------~gi~el~~~i~~~~ 195 (199)
T TIGR00101 153 VGADLGVME----RDAKKMRG---EKPFIFTNLKTK----------EGLDTVIDWIEHYA 195 (199)
T ss_pred ccccHHHHH----HHHHHhCC---CCCEEEEECCCC----------CCHHHHHHHHHhhc
Confidence 11222233 33333322 478999999998 69999999987643
No 330
>KOG0077|consensus
Probab=99.01 E-value=1.4e-09 Score=88.66 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=84.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
+++-+++++|-.|||||||++.|-.... +.+ -.|.-.....+...+-.++-+|..||..-.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl-------------~qh------vPTlHPTSE~l~Ig~m~ftt~DLGGH~qAr 78 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRL-------------GQH------VPTLHPTSEELSIGGMTFTTFDLGGHLQAR 78 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccc-------------ccc------CCCcCCChHHheecCceEEEEccccHHHHH
Confidence 3567899999999999999998853211 111 112222223345567778999999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCC-CCChhHHHHHHHHHHc----CCCeEEEEEeccCCCCH
Q psy15217 90 KNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQV----GVPYIVVFLNKADMVDD 143 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~-g~~~qt~e~l~~~~~~----~ip~iIvviNK~D~~~~ 143 (396)
+-+..++..+|++++.|||.+ ..+...++++..+... .+|.+| ..||+|.+.+
T Consensus 79 r~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~li-lgnKId~p~a 136 (193)
T KOG0077|consen 79 RVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLI-LGNKIDIPYA 136 (193)
T ss_pred HHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCccee-ecccccCCCc
Confidence 999999999999999999987 4556677777666543 788666 5799999876
No 331
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.98 E-value=1.7e-08 Score=93.11 Aligned_cols=143 Identities=21% Similarity=0.312 Sum_probs=82.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhh--
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD-- 87 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~-- 87 (396)
.+||.++|..|.|||||++.|+......... ..+.......+...+.......+.++ ..++++||||..+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i 77 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDS------SIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI 77 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccc------cccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc
Confidence 5899999999999999999998753221110 00111112223444444444444343 3578999999432
Q ss_pred -------------------hHHHHHhhh------hcCCEEEEEEecC-CCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 88 -------------------YIKNMITGA------AQMDGAILVCSAA-DGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 88 -------------------~~~~~~~~~------~~~d~~llVvda~-~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
|+..-.... ...|++|+.++++ +++.+.+.+.+..+... ++ +|-+|.|.|..
T Consensus 78 ~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vN-vIPvIaKaD~l 155 (281)
T PF00735_consen 78 DNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VN-VIPVIAKADTL 155 (281)
T ss_dssp THCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SE-EEEEESTGGGS
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-cc-EEeEEeccccc
Confidence 111111111 1458999999987 47888777766666544 34 66789999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCC
Q psy15217 142 DDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 142 ~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
.+++ .+.++..+.+-++..+.
T Consensus 156 t~~e-l~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 156 TPEE-LQAFKQRIREDLEENNI 176 (281)
T ss_dssp -HHH-HHHHHHHHHHHHHHTT-
T ss_pred CHHH-HHHHHHHHHHHHHHcCc
Confidence 9755 45566678887877665
No 332
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.96 E-value=2.3e-09 Score=97.92 Aligned_cols=167 Identities=15% Similarity=0.105 Sum_probs=90.5
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhh--cCceE-Eeee---------------eEE
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKA--RGITI-NTAH---------------IEY 70 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~--~g~t~-~~~~---------------~~~ 70 (396)
.+...-+.++|.+|||||||+++|+.......+..............++- .|... .... ..+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L 180 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRL 180 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHH
Confidence 35678899999999999999999987653322111100000111122222 22211 1110 011
Q ss_pred eeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHH-HHHHH
Q psy15217 71 ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE-ELLEL 149 (396)
Q Consensus 71 ~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~-~~~~~ 149 (396)
......+.||++-|.-..-... --..+.-+.|++..+|... .. .+-..+....++ ++||+|+.+.. ...+.
T Consensus 181 ~~~~~d~liIEnvGnLvcPa~f---dlge~~~v~vlsV~eg~dk-pl---Kyp~~f~~ADIV-VLNKiDLl~~~~~dle~ 252 (290)
T PRK10463 181 PLDDNGILFIENVGNLVCPASF---DLGEKHKVAVLSVTEGEDK-PL---KYPHMFAAASLM-LLNKVDLLPYLNFDVEK 252 (290)
T ss_pred hhcCCcEEEEECCCCccCCCcc---chhhceeEEEEECcccccc-ch---hccchhhcCcEE-EEEhHHcCcccHHHHHH
Confidence 2234567899998841111100 0123455678888876431 11 112234556666 57999998641 11222
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 150 VEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 150 i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
+.+.++... ...+++++||++| +++++|+++|..
T Consensus 253 ----~~~~lr~ln---p~a~I~~vSA~tG----------eGld~L~~~L~~ 286 (290)
T PRK10463 253 ----CIACAREVN---PEIEIILISATSG----------EGMDQWLNWLET 286 (290)
T ss_pred ----HHHHHHhhC---CCCcEEEEECCCC----------CCHHHHHHHHHH
Confidence 222233332 2478999999998 689999999875
No 333
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.95 E-value=3.2e-08 Score=71.84 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=61.6
Q ss_pred CceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCC
Q psy15217 211 GAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVE 290 (396)
Q Consensus 211 ~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~ 290 (396)
.|-++.|...|....+. ++.|+|..|+|++|..| +...-..|+|||.+++++++|.+||.|++.+.|.. ++.
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l-----~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~ 74 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL-----DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIK 74 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE-----CSSCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc-----CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCC
Confidence 36678888888888888 77779999999999999 22346789999999999999999999999999855 899
Q ss_pred CCeEEe
Q psy15217 291 RGQVLA 296 (396)
Q Consensus 291 ~G~vl~ 296 (396)
.||+|-
T Consensus 75 eGDiLy 80 (81)
T PF14578_consen 75 EGDILY 80 (81)
T ss_dssp TT-EEE
T ss_pred CCCEEe
Confidence 999873
No 334
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.95 E-value=7.7e-09 Score=92.67 Aligned_cols=69 Identities=17% Similarity=0.096 Sum_probs=49.4
Q ss_pred CeeEEEEecCChh--------hh----HH-HHHhhhh-cCCEEEEEEecCCCCChhH-HHHHHHHHHcCCCeEEEEEecc
Q psy15217 74 ARHYAHVDCPGHA--------DY----IK-NMITGAA-QMDGAILVCSAADGPMPQT-REHILLARQVGVPYIVVFLNKA 138 (396)
Q Consensus 74 ~~~~~iiDtpG~~--------~~----~~-~~~~~~~-~~d~~llVvda~~g~~~qt-~e~l~~~~~~~ip~iIvviNK~ 138 (396)
...++++||||.. .. +. .+..++. ..+.+++|+||+.++..+. .+.+..+...+.+.++ |+||+
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~-ViTK~ 202 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIG-VITKL 202 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEE-EEECC
Confidence 3578999999963 11 22 2334455 3468999999999888776 5666777777888554 67999
Q ss_pred CCCCH
Q psy15217 139 DMVDD 143 (396)
Q Consensus 139 D~~~~ 143 (396)
|..++
T Consensus 203 D~~~~ 207 (240)
T smart00053 203 DLMDE 207 (240)
T ss_pred CCCCc
Confidence 99875
No 335
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.91 E-value=8.9e-08 Score=88.63 Aligned_cols=144 Identities=20% Similarity=0.289 Sum_probs=94.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhH-hhcCceEEeeeeEEeeCCe--eEEEEecCChh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEE-KARGITINTAHIEYETKAR--HYAHVDCPGHA 86 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e-~~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~ 86 (396)
.-.++|.++|..|.||||+++.|++....... ..+....+ ...++.+......++.++. .++++||||..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~-------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfG 93 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDET-------EIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFG 93 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCC-------CccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcc
Confidence 45789999999999999999999987322211 01222222 3345555555555555554 56799999943
Q ss_pred hh---------------------HHHHHhhhh-------cCCEEEEEEecC-CCCChhHHHHHHHHHHcCCCeEEEEEec
Q psy15217 87 DY---------------------IKNMITGAA-------QMDGAILVCSAA-DGPMPQTREHILLARQVGVPYIVVFLNK 137 (396)
Q Consensus 87 ~~---------------------~~~~~~~~~-------~~d~~llVvda~-~g~~~qt~e~l~~~~~~~ip~iIvviNK 137 (396)
++ +.+-..--+ ..+++|+.+.++ +|+.+.+.+.+..+... -.+|-||-|
T Consensus 94 D~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~--vNlIPVI~K 171 (373)
T COG5019 94 DFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR--VNLIPVIAK 171 (373)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc--cCeeeeeec
Confidence 33 322222211 358999999866 58999998887766543 336667899
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 138 ADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 138 ~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
.|..+.+++ ...++.+.+.+...++
T Consensus 172 aD~lT~~El-~~~K~~I~~~i~~~nI 196 (373)
T COG5019 172 ADTLTDDEL-AEFKERIREDLEQYNI 196 (373)
T ss_pred cccCCHHHH-HHHHHHHHHHHHHhCC
Confidence 999998664 4566677777776554
No 336
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.87 E-value=6.4e-08 Score=91.49 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=54.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC-----------------e
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-----------------R 75 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-----------------~ 75 (396)
++|+++|.+++|||||+++|++....... -.+.|++.....+...+ .
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~n----------------ypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a 66 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAAN----------------YPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPA 66 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecc----------------cccccccceEEEEEeccccchhhHHhcCCccccCc
Confidence 68999999999999999999975421111 11344443322221111 2
Q ss_pred eEEEEecCCh-----h--hhHHHHHhhhhcCCEEEEEEecCC
Q psy15217 76 HYAHVDCPGH-----A--DYIKNMITGAAQMDGAILVCSAAD 110 (396)
Q Consensus 76 ~~~iiDtpG~-----~--~~~~~~~~~~~~~d~~llVvda~~ 110 (396)
.+.++|+||- . ......+..++.+|++++|||+..
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 5899999992 2 234455666789999999999953
No 337
>KOG3883|consensus
Probab=98.85 E-value=2.3e-07 Score=74.72 Aligned_cols=159 Identities=20% Similarity=0.126 Sum_probs=99.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceE-EeeeeEEeeCC---eeEEEEecCChh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITI-NTAHIEYETKA---RHYAHVDCPGHA 86 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~-~~~~~~~~~~~---~~~~iiDtpG~~ 86 (396)
...+|+++|.-++|||.++.+|+....-.+. +...|+ ++.....+++. ..+.|.||.|..
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~----------------e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq 71 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGT----------------ELHPTIEDIYVASVETDRGAREQLRLYDTAGLQ 71 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCC----------------ccccchhhheeEeeecCCChhheEEEeeccccc
Confidence 4679999999999999999999865322211 111232 22333444432 357899999988
Q ss_pred hh-HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHH--------cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy15217 87 DY-IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ--------VGVPYIVVFLNKADMVDDEELLELVEIEIREL 157 (396)
Q Consensus 87 ~~-~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~--------~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~ 157 (396)
.+ ...-..++..+|+.+||.|..+ ..+...+.+++. -.+| |+|..||+|+..+.+...... ...
T Consensus 72 ~~~~eLprhy~q~aDafVLVYs~~d---~eSf~rv~llKk~Idk~KdKKEvp-iVVLaN~rdr~~p~~vd~d~A---~~W 144 (198)
T KOG3883|consen 72 GGQQELPRHYFQFADAFVLVYSPMD---PESFQRVELLKKEIDKHKDKKEVP-IVVLANKRDRAEPREVDMDVA---QIW 144 (198)
T ss_pred CchhhhhHhHhccCceEEEEecCCC---HHHHHHHHHHHHHHhhcccccccc-EEEEechhhcccchhcCHHHH---HHH
Confidence 88 3333445677999999999987 333333333332 2567 555679999976522111111 111
Q ss_pred HhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC
Q psy15217 158 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR 207 (396)
Q Consensus 158 l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~ 207 (396)
.+ .+.+....+++... .++.+-+.++...+..|..
T Consensus 145 a~-----rEkvkl~eVta~dR----------~sL~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 145 AK-----REKVKLWEVTAMDR----------PSLYEPFTYLASRLHQPQS 179 (198)
T ss_pred Hh-----hhheeEEEEEeccc----------hhhhhHHHHHHHhccCCcc
Confidence 11 13567888898874 5788888888877766653
No 338
>KOG0393|consensus
Probab=98.84 E-value=1.1e-08 Score=87.69 Aligned_cols=157 Identities=22% Similarity=0.192 Sum_probs=94.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC-Ce--eEEEEecCChhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-AR--HYAHVDCPGHAD 87 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~--~~~iiDtpG~~~ 87 (396)
..++++++|...+|||.|+-.++.. ..+.+....+. +-.......+ ++ .+.+|||+|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~----------------~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqed 65 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTN----------------AFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQED 65 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccC----------------cCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcc
Confidence 3689999999999999998776542 11222111111 1111223332 43 467999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCC--ChhHHHHHHHHHH--cCCCeEEEEEeccCCCCHHHHHHHHH---------HHH
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGP--MPQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVE---------IEI 154 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~--~~qt~e~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~i~---------~~~ 154 (396)
|-+.......++|..|++.+..... ..-...++-..+. -++|.+ +|-+|.|+.+.....+.+. .+.
T Consensus 66 YDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpii-LVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g 144 (198)
T KOG0393|consen 66 YDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPII-LVGTKADLRDDPSTLEKLQRQGLEPVTYEQG 144 (198)
T ss_pred cccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEE-EEeehHHhhhCHHHHHHHHhccCCcccHHHH
Confidence 9776666777899999988876521 1111111222222 268854 4569999985422222221 234
Q ss_pred HHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhh
Q psy15217 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (396)
Q Consensus 155 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~ 199 (396)
..+.+++|. ..++.+||++. .++.+.++.-.
T Consensus 145 ~~lA~~iga----~~y~EcSa~tq----------~~v~~vF~~a~ 175 (198)
T KOG0393|consen 145 LELAKEIGA----VKYLECSALTQ----------KGVKEVFDEAI 175 (198)
T ss_pred HHHHHHhCc----ceeeeehhhhh----------CCcHHHHHHHH
Confidence 555566664 67999999986 46666666533
No 339
>KOG3886|consensus
Probab=98.83 E-value=4.4e-08 Score=84.51 Aligned_cols=145 Identities=17% Similarity=0.239 Sum_probs=97.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC-eeEEEEecCChhhhHH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHADYIK 90 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpG~~~~~~ 90 (396)
..+|.++|..|||||++-.......... .-+.-|-|+++.+......+ -.+.+||+.|++.|++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~---------------D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fme 68 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIAR---------------DTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFME 68 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhh---------------hhhccCCcceeeehhhhhhhhheeehhccCCcHHHHH
Confidence 3589999999999999988776432111 11233788888776665554 4567999999999998
Q ss_pred HHHhh-----hhcCCEEEEEEecCCCCChhHHHHHHHHHHc------CCCeEEEEEeccCCCCHH---HHHHHHHHHHHH
Q psy15217 91 NMITG-----AAQMDGAILVCSAADGPMPQTREHILLARQV------GVPYIVVFLNKADMVDDE---ELLELVEIEIRE 156 (396)
Q Consensus 91 ~~~~~-----~~~~d~~llVvda~~g~~~qt~e~l~~~~~~------~ip~iIvviNK~D~~~~~---~~~~~i~~~~~~ 156 (396)
+..+. .+..++.++|.|+.......+.+|.+.+... ..+ +.+.+.|||++..+ ..++.-+..+..
T Consensus 69 n~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~Ak-iF~l~hKmDLv~~d~r~~if~~r~~~l~~ 147 (295)
T KOG3886|consen 69 NYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAK-IFCLLHKMDLVQEDARELIFQRRKEDLRR 147 (295)
T ss_pred HHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcce-EEEEEeechhcccchHHHHHHHHHHHHHH
Confidence 87763 4578999999999987777676666554332 233 44568999998653 333333333333
Q ss_pred HHhhcCCCCCCCeEEEecccc
Q psy15217 157 LLNKYEFPGNDIPIIKGSAKL 177 (396)
Q Consensus 157 ~l~~~~~~~~~~~~i~~Sa~~ 177 (396)
+-+.+ .+..+|.|.+.
T Consensus 148 ~s~~~-----~~~~f~TsiwD 163 (295)
T KOG3886|consen 148 LSRPL-----ECKCFPTSIWD 163 (295)
T ss_pred hcccc-----cccccccchhh
Confidence 33322 25678888876
No 340
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.77 E-value=2.6e-07 Score=92.09 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=69.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh---
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY--- 88 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--- 88 (396)
.++|+++|.+|+||||++|.|++...-.... ...++| .........++..+.+|||||..+.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss--------------~~~~TT-r~~ei~~~idG~~L~VIDTPGL~dt~~d 182 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDA--------------FGMGTT-SVQEIEGLVQGVKIRVIDTPGLKSSASD 182 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccC--------------CCCCce-EEEEEEEEECCceEEEEECCCCCccccc
Confidence 4689999999999999999998753211100 011223 3333334456788999999995432
Q ss_pred ---HHH----HHhhhh--cCCEEEEEEecCCCCC-hhHHHHHHHHHH-cC---CCeEEEEEeccCCCC
Q psy15217 89 ---IKN----MITGAA--QMDGAILVCSAADGPM-PQTREHILLARQ-VG---VPYIVVFLNKADMVD 142 (396)
Q Consensus 89 ---~~~----~~~~~~--~~d~~llVvda~~g~~-~qt~e~l~~~~~-~~---ip~iIvviNK~D~~~ 142 (396)
... ....+. .+|++|+|........ ......+..+.. +| ..+.||+.|+.|..+
T Consensus 183 q~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 183 QSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 122 222223 4798888886643222 122233333322 22 356788899999885
No 341
>KOG1547|consensus
Probab=98.73 E-value=6.1e-07 Score=77.98 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=90.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhh-cCceEEeeeeEEeeCCe--eEEEEecCC---
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKA-RGITINTAHIEYETKAR--HYAHVDCPG--- 84 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~-~g~t~~~~~~~~~~~~~--~~~iiDtpG--- 84 (396)
-.+||.++|..|.|||||++.|......+.... | ..+|.. ..+.+....-.++.++. .++++||||
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~-------~-~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSS-------D-NSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCC-------C-cccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 468999999999999999999987544332111 1 111111 12223333333443433 568999999
Q ss_pred ------------------hhhhHHHHHhhhh-------cCCEEEEEEecCC-CCChhHHHHHHHHHHcCCCeEEEEEecc
Q psy15217 85 ------------------HADYIKNMITGAA-------QMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKA 138 (396)
Q Consensus 85 ------------------~~~~~~~~~~~~~-------~~d~~llVvda~~-g~~~qt~e~l~~~~~~~ip~iIvviNK~ 138 (396)
|+.|++.-+...+ ..+++++.+.++- .+.+-+.|.+..+... -.+|-||-|.
T Consensus 117 qInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v--vNvvPVIaka 194 (336)
T KOG1547|consen 117 QINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV--VNVVPVIAKA 194 (336)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh--heeeeeEeec
Confidence 4555555444432 3578888888764 5667778877665543 3455678999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEeccc
Q psy15217 139 DMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 176 (396)
Q Consensus 139 D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~ 176 (396)
|...-+++ ...++.+++-+...++ .+.|-...
T Consensus 195 DtlTleEr-~~FkqrI~~el~~~~i-----~vYPq~~f 226 (336)
T KOG1547|consen 195 DTLTLEER-SAFKQRIRKELEKHGI-----DVYPQDSF 226 (336)
T ss_pred ccccHHHH-HHHHHHHHHHHHhcCc-----cccccccc
Confidence 98876443 3344456665655554 35554443
No 342
>KOG2486|consensus
Probab=98.67 E-value=8.6e-08 Score=85.19 Aligned_cols=151 Identities=21% Similarity=0.236 Sum_probs=95.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh----
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH---- 85 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~---- 85 (396)
.....+++.|..++|||+|++.|+........+.. ..|-|....++. -+..+.++|.||.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~-------------K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~ 197 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKS-------------KNGKTQAINHFH---VGKSWYEVDLPGYGRAG 197 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCC-------------CCccceeeeeee---ccceEEEEecCCccccc
Confidence 34689999999999999999999865322111100 224454444332 3567999999991
Q ss_pred ------hhhHHHHHh---hhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHH-----HHHHHH
Q psy15217 86 ------ADYIKNMIT---GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEE-----LLELVE 151 (396)
Q Consensus 86 ------~~~~~~~~~---~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~-----~~~~i~ 151 (396)
.++.+.+.. .-..---+.+.+|+.-++++-+-..+..+...++|.-+ +.||||....-. .-..++
T Consensus 198 y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~-vfTK~DK~k~~~~~~kKp~~~i~ 276 (320)
T KOG2486|consen 198 YGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTS-VFTKCDKQKKVKRTGKKPGLNIK 276 (320)
T ss_pred CCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEE-eeehhhhhhhccccccCccccce
Confidence 222222322 23345668889999999999999999999999999655 579999764310 001111
Q ss_pred HHHHHHHhhcCCCCCCCeEEEecccccc
Q psy15217 152 IEIRELLNKYEFPGNDIPIIKGSAKLAL 179 (396)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~i~~Sa~~g~ 179 (396)
..+..+...+ + ....||+.+|+.++.
T Consensus 277 ~~f~~l~~~~-f-~~~~Pw~~~Ssvt~~ 302 (320)
T KOG2486|consen 277 INFQGLIRGV-F-LVDLPWIYVSSVTSL 302 (320)
T ss_pred eehhhccccc-e-eccCCceeeeccccc
Confidence 1122222111 1 135688999998863
No 343
>KOG1707|consensus
Probab=98.65 E-value=1.2e-07 Score=92.05 Aligned_cols=120 Identities=21% Similarity=0.195 Sum_probs=77.6
Q ss_pred cCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChh
Q psy15217 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (396)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~ 86 (396)
...+..++|+++|.-|+|||||+-+|+...--.. +-.+++ -+++- ..+..+....+++|++...
T Consensus 4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~--------VP~rl~-----~i~IP---advtPe~vpt~ivD~ss~~ 67 (625)
T KOG1707|consen 4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA--------VPRRLP-----RILIP---ADVTPENVPTSIVDTSSDS 67 (625)
T ss_pred ccCccceEEEEECCCCccHHHHHHHHHhhhcccc--------ccccCC-----ccccC---CccCcCcCceEEEeccccc
Confidence 3456789999999999999999999986421000 000000 11211 1222233447899999766
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCC--CCChhHHHHHHHHHHc-----CCCeEEEEEeccCCCCH
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAAD--GPMPQTREHILLARQV-----GVPYIVVFLNKADMVDD 143 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~--g~~~qt~e~l~~~~~~-----~ip~iIvviNK~D~~~~ 143 (396)
+-.......++.||++.+|.+.++ .+..-+..+|-+.+++ ++| +|+|-||+|..+.
T Consensus 68 ~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~P-VILvGNK~d~~~~ 130 (625)
T KOG1707|consen 68 DDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETP-VILVGNKSDNGDN 130 (625)
T ss_pred chhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCC-EEEEeeccCCccc
Confidence 655566777889999999998876 2223334445555554 477 6667899998764
No 344
>KOG2655|consensus
Probab=98.63 E-value=7.6e-07 Score=83.18 Aligned_cols=142 Identities=18% Similarity=0.268 Sum_probs=90.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCe--eEEEEecCChhhh-
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHADY- 88 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~~~- 88 (396)
.+++.++|..|.|||||+|.|+........ .....+.+..+..++.......+-++. .++++||||..++
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~-------~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v 93 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNR-------EVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV 93 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCc-------ccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence 589999999999999999999876221110 011122222335555555555555554 4679999994333
Q ss_pred --------------------HHHHHhh----hh--cCCEEEEEEecC-CCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 89 --------------------IKNMITG----AA--QMDGAILVCSAA-DGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 89 --------------------~~~~~~~----~~--~~d~~llVvda~-~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
+..-..- .. ..+++++.+... +|+.+.+.+.+..+... +. +|-||-|.|..
T Consensus 94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~-vN-iIPVI~KaD~l 171 (366)
T KOG2655|consen 94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK-VN-LIPVIAKADTL 171 (366)
T ss_pred cccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc-cc-ccceeeccccC
Confidence 2211111 11 468999999876 48999888877665543 33 55578999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCC
Q psy15217 142 DDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 142 ~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
.+++. ...+..+...+...++
T Consensus 172 T~~El-~~~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 172 TKDEL-NQFKKRIRQDIEEHNI 192 (366)
T ss_pred CHHHH-HHHHHHHHHHHHHcCc
Confidence 98664 4455566666665543
No 345
>PTZ00258 GTP-binding protein; Provisional
Probab=98.62 E-value=1.7e-07 Score=89.72 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=56.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC----------------
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK---------------- 73 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---------------- 73 (396)
...++|+++|.+++|||||+++|++........ .+.|++.....+...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~----------------pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~ 82 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENF----------------PFCTIDPNTARVNVPDERFDWLCKHFKPKSI 82 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCC----------------CCCcccceEEEEecccchhhHHHHHcCCccc
Confidence 356799999999999999999998653221111 144544433333222
Q ss_pred -CeeEEEEecCChh-------hhHHHHHhhhhcCCEEEEEEecC
Q psy15217 74 -ARHYAHVDCPGHA-------DYIKNMITGAAQMDGAILVCSAA 109 (396)
Q Consensus 74 -~~~~~iiDtpG~~-------~~~~~~~~~~~~~d~~llVvda~ 109 (396)
...+.|+||||-. ......+..++.+|++++|||+.
T Consensus 83 ~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 83 VPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2348999999932 23445566678999999999985
No 346
>KOG1673|consensus
Probab=98.62 E-value=7.4e-07 Score=72.05 Aligned_cols=157 Identities=17% Similarity=0.226 Sum_probs=105.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEee--eeEEeeCCeeEEEEecCChhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA--HIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
-.++|+++|+...|||||+-...+...+ +|......++.. ........-.+.+||..|+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~d----------------e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~ 82 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYD----------------EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREF 82 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhH----------------HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhh
Confidence 3679999999999999999877654322 222222222222 2223333345789999999998
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHcC---CCeEEEEEeccCCCC--HHHHHHHHHHHHHHHHhhcC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQVG---VPYIVVFLNKADMVD--DEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~~---ip~iIvviNK~D~~~--~~~~~~~i~~~~~~~l~~~~ 162 (396)
.....-+...+-+++++.|-+.... ...+++...++.++ +| ++ +-+|-|+.- +.+..+.+..+.+.+.+-++
T Consensus 83 ~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-il-vGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn 160 (205)
T KOG1673|consen 83 INMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-IL-VGTKYDLFIDLPPELQETISRQARKYAKVMN 160 (205)
T ss_pred hccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EE-eccchHhhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 7766666678889999999887332 34567777777764 66 44 469999631 13556677777777777654
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
.+.+.+|+-... ++..+++.+..
T Consensus 161 -----AsL~F~Sts~sI----------Nv~KIFK~vlA 183 (205)
T KOG1673|consen 161 -----ASLFFCSTSHSI----------NVQKIFKIVLA 183 (205)
T ss_pred -----CcEEEeeccccc----------cHHHHHHHHHH
Confidence 579999998763 66666665443
No 347
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.60 E-value=1.3e-07 Score=86.49 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=52.7
Q ss_pred EEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC-----------------eeE
Q psy15217 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-----------------RHY 77 (396)
Q Consensus 15 i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-----------------~~~ 77 (396)
|+++|.+++|||||+++|++....... ..+.|++.........+ ..+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n----------------~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i 64 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAAN----------------YPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATI 64 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcccc----------------ccccchhceeeeEEeccchhhhHHHHhCCceeeeeEE
Confidence 589999999999999999975432111 11344443332222221 248
Q ss_pred EEEecCCh-------hhhHHHHHhhhhcCCEEEEEEecCC
Q psy15217 78 AHVDCPGH-------ADYIKNMITGAAQMDGAILVCSAAD 110 (396)
Q Consensus 78 ~iiDtpG~-------~~~~~~~~~~~~~~d~~llVvda~~ 110 (396)
.++|+||- +......+..++.+|++++|||+..
T Consensus 65 ~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 65 EFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 89999992 2234455666788999999999863
No 348
>KOG0410|consensus
Probab=98.60 E-value=3.1e-07 Score=83.30 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=94.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh-
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY- 88 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~- 88 (396)
.+..-|+++|-.++|||||+++|+.... ....+.+.-+|... ....+ .+++.+.+.||-|.-.-
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal---~p~drLFATLDpT~-----------h~a~L-psg~~vlltDTvGFisdL 240 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAAL---YPNDRLFATLDPTL-----------HSAHL-PSGNFVLLTDTVGFISDL 240 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhc---Cccchhheeccchh-----------hhccC-CCCcEEEEeechhhhhhC
Confidence 3456799999999999999999995321 11112221222211 11112 24567889999995333
Q ss_pred -------HHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHcCCC------eEEEEEeccCCCCHHHHHHHHHHHH
Q psy15217 89 -------IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVP------YIVVFLNKADMVDDEELLELVEIEI 154 (396)
Q Consensus 89 -------~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~~ip------~iIvviNK~D~~~~~~~~~~i~~~~ 154 (396)
+..++.-...+|.++-|+|.++.. ..|....+..++.+|+| .+|=|=||+|..+..
T Consensus 241 P~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~---------- 310 (410)
T KOG0410|consen 241 PIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE---------- 310 (410)
T ss_pred cHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc----------
Confidence 233444456799999999999854 45666667788888886 223234666654320
Q ss_pred HHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 155 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
...+.--.+++|+++| +++.++++++...+.
T Consensus 311 --------~e~E~n~~v~isaltg----------dgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 311 --------VEEEKNLDVGISALTG----------DGLEELLKAEETKVA 341 (410)
T ss_pred --------CccccCCccccccccC----------ccHHHHHHHHHHHhh
Confidence 0001112788999998 689999999877543
No 349
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.53 E-value=1.6e-06 Score=65.24 Aligned_cols=80 Identities=25% Similarity=0.414 Sum_probs=61.7
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCC-ceeEEEEEEEec----ceeeCeeecCCeEEEEecccCcc
Q psy15217 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD-TVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKRE 287 (396)
Q Consensus 213 ~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~-~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~ 287 (396)
|++.|.++...+..|.+..+||.+|+|++||+|++...+. ..+.+|.++... ..+++++.|||.+++ .++ .
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i--~gl--~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAI--AGI--E 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEE--ECC--C
Confidence 4678888888888999999999999999999998764321 234566676433 368899999999866 444 4
Q ss_pred CCCCCeEEe
Q psy15217 288 DVERGQVLA 296 (396)
Q Consensus 288 ~i~~G~vl~ 296 (396)
+++.|++|+
T Consensus 77 ~~~~Gdtl~ 85 (86)
T cd03691 77 DITIGDTIC 85 (86)
T ss_pred CCcccceec
Confidence 688999886
No 350
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.52 E-value=1.1e-06 Score=65.88 Aligned_cols=80 Identities=20% Similarity=0.198 Sum_probs=63.6
Q ss_pred CCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccC
Q psy15217 210 DGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTK 285 (396)
Q Consensus 210 ~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~ 285 (396)
+.||.+.|..+...+..|....+||.+|+|+.||.+.... ..+.++..|... +.++++|.|||++++ .++
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~---~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai--~gl- 74 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR---EEKIKITELRVFNNGEVVTADTVTAGDIAIL--TGL- 74 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC---CcEEEeceeEEEeCCCeEECcEECCCCEEEE--ECC-
Confidence 3688999999999999999999999999999999997643 233456666544 368899999999988 443
Q ss_pred ccCCCCCeEEe
Q psy15217 286 REDVERGQVLA 296 (396)
Q Consensus 286 ~~~i~~G~vl~ 296 (396)
.+++.||+|+
T Consensus 75 -~~~~~Gdtl~ 84 (85)
T cd03690 75 -KGLRVGDVLG 84 (85)
T ss_pred -CCCcCccccC
Confidence 4577898885
No 351
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.49 E-value=1.5e-06 Score=64.84 Aligned_cols=78 Identities=18% Similarity=0.121 Sum_probs=60.6
Q ss_pred eEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCC
Q psy15217 214 LLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDV 289 (396)
Q Consensus 214 ~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i 289 (396)
...|.++...+..|.+..+||.+|+|++||.+.+.... .+.++..|... ..++++|.|||++++ .++ .++
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~ 75 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTG--KKERISRLLQPFADQYQEIPSLSAGNIGVI--TGL--KQT 75 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCC--CEEEeeEEEEEECCCceECCeeCCCCEEEE--ECC--CCc
Confidence 45677777788889999999999999999999875422 34556666443 478899999999997 554 458
Q ss_pred CCCeEEec
Q psy15217 290 ERGQVLAK 297 (396)
Q Consensus 290 ~~G~vl~~ 297 (396)
+.||+||.
T Consensus 76 ~~Gdtl~~ 83 (83)
T cd04092 76 RTGDTLVT 83 (83)
T ss_pred ccCCEEeC
Confidence 89999873
No 352
>KOG1490|consensus
Probab=98.49 E-value=3.4e-07 Score=87.48 Aligned_cols=147 Identities=15% Similarity=0.106 Sum_probs=81.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh--
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD-- 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~-- 87 (396)
.+...+.+||-+++|||++++.++....+.....+ +|-..-...+.+.-..+.++||||--+
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaF----------------TTksL~vGH~dykYlrwQViDTPGILD~p 229 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAF----------------TTKLLLVGHLDYKYLRWQVIDTPGILDRP 229 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCccc----------------ccchhhhhhhhhheeeeeecCCccccCcc
Confidence 34568899999999999999988865433322111 111222223344445688999999322
Q ss_pred ----hHHHHHhhhhcC---CEEEEEEecCC--CCC--hhHHHHHHHHHH--cCCCeEEEEEeccCCCCHHHHHHHHHHHH
Q psy15217 88 ----YIKNMITGAAQM---DGAILVCSAAD--GPM--PQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEI 154 (396)
Q Consensus 88 ----~~~~~~~~~~~~---d~~llVvda~~--g~~--~qt~e~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~i~~~~ 154 (396)
..-+|.+-...| -+++++.|-++ |.. .|-... .-++- .+.| .|+|+||+|...++..-+.- .++
T Consensus 230 lEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLf-hsIKpLFaNK~-~IlvlNK~D~m~~edL~~~~-~~l 306 (620)
T KOG1490|consen 230 EEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLY-HSIKPLFANKV-TILVLNKIDAMRPEDLDQKN-QEL 306 (620)
T ss_pred hhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHH-HHhHHHhcCCc-eEEEeecccccCccccCHHH-HHH
Confidence 223333322223 56888999876 332 232211 11111 2556 55578999987763322211 122
Q ss_pred HHHHhhcCCCCCCCeEEEecccccc
Q psy15217 155 RELLNKYEFPGNDIPIIKGSAKLAL 179 (396)
Q Consensus 155 ~~~l~~~~~~~~~~~~i~~Sa~~g~ 179 (396)
-+.+..-+ +++++..|..+..
T Consensus 307 l~~~~~~~----~v~v~~tS~~~ee 327 (620)
T KOG1490|consen 307 LQTIIDDG----NVKVVQTSCVQEE 327 (620)
T ss_pred HHHHHhcc----CceEEEecccchh
Confidence 22232222 3789999998753
No 353
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.47 E-value=1.9e-06 Score=64.23 Aligned_cols=78 Identities=19% Similarity=0.176 Sum_probs=60.4
Q ss_pred eEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCC
Q psy15217 214 LLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDV 289 (396)
Q Consensus 214 ~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i 289 (396)
...|.++...+..|.+..+||.+|+|++||.+.+... ..+.++..|... ..++++|.|||++.+ .++ .++
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~--~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g~--~~~ 75 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTK--GKKERVGRLLRMHGKKQEEVEEAGAGDIGAV--AGL--KDT 75 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCC--CcEEEeeEEEEEcCCCceECCEeCCCCEEEE--ECC--CCC
Confidence 3456777777888999999999999999999987642 334566666543 468899999999999 454 358
Q ss_pred CCCeEEec
Q psy15217 290 ERGQVLAK 297 (396)
Q Consensus 290 ~~G~vl~~ 297 (396)
+.||+|++
T Consensus 76 ~~Gdtl~~ 83 (83)
T cd04088 76 ATGDTLCD 83 (83)
T ss_pred ccCCEeeC
Confidence 89999863
No 354
>KOG0448|consensus
Probab=98.45 E-value=3.1e-06 Score=83.94 Aligned_cols=100 Identities=21% Similarity=0.137 Sum_probs=59.6
Q ss_pred eEEEEecCChh---hhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH-HHHHHHHH
Q psy15217 76 HYAHVDCPGHA---DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVE 151 (396)
Q Consensus 76 ~~~iiDtpG~~---~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~~~~~~i~ 151 (396)
.+.++|.||-. .+........-.+|+.|||+.|...+....++.+..+.. +.|+|.++.||+|.... .+..+.+.
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~-~KpniFIlnnkwDasase~ec~e~V~ 285 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE-EKPNIFILNNKWDASASEPECKEDVL 285 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc-cCCcEEEEechhhhhcccHHHHHHHH
Confidence 67899999942 223333334458999999999987554444444444444 47877777899998754 34444454
Q ss_pred HHHHHHHhhcCCCCCCCeEEEecccc
Q psy15217 152 IEIRELLNKYEFPGNDIPIIKGSAKL 177 (396)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~i~~Sa~~ 177 (396)
.++.+ |+-..+....--++.+||+.
T Consensus 286 ~Qi~e-L~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 286 KQIHE-LSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHh-cCcccHhhhcCeeEEEeccc
Confidence 44331 11111111233588889654
No 355
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.45 E-value=1.6e-06 Score=73.10 Aligned_cols=90 Identities=23% Similarity=0.255 Sum_probs=61.4
Q ss_pred HhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15217 93 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 172 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~ 172 (396)
......+|.+++|+|++++...+..+....+...+.|.+ +++||+|+.+.+.. +. ...+.... ..++++
T Consensus 7 ~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~i-iv~NK~Dl~~~~~~-~~----~~~~~~~~-----~~~~~~ 75 (156)
T cd01859 7 RRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLL-IVLNKADLVPKEVL-EK----WKSIKESE-----GIPVVY 75 (156)
T ss_pred HHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEE-EEEEhHHhCCHHHH-HH----HHHHHHhC-----CCcEEE
Confidence 334456999999999988665555555555556688854 56899999764322 11 11222221 257999
Q ss_pred ecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 173 GSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 173 ~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+||+++ .++++|++.+.+.+|
T Consensus 76 iSa~~~----------~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKER----------LGTKILRRTIKELAK 96 (156)
T ss_pred EEcccc----------ccHHHHHHHHHHHHh
Confidence 999997 589999999988775
No 356
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.44 E-value=3.6e-06 Score=63.21 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=60.8
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec---ceeeCeeecCCeEEEEeccc-CccC
Q psy15217 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF---RKLLDQGQAGDNIGLLLRGT-KRED 288 (396)
Q Consensus 213 ~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~---~~~~~~a~~G~~v~l~l~~~-~~~~ 288 (396)
|.+.|.++...+..|.+..+||.+|+|+.||.++....+ .+.++..+... +.+++++.|||++++.- ++ +..+
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~--~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~~-g~~~l~~ 77 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTG--KEYEVEEVGIFRPEMTPTDELSAGQVGYIIA-GIKTVKD 77 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCC--CeEEEEEEEEECCCccCCceECCCCEEEEEc-cccccCc
Confidence 356788888888899999999999999999999876422 23445555433 46889999999998841 22 2246
Q ss_pred CCCCeEEec
Q psy15217 289 VERGQVLAK 297 (396)
Q Consensus 289 i~~G~vl~~ 297 (396)
++.||+|+.
T Consensus 78 ~~~Gdtl~~ 86 (86)
T cd03699 78 ARVGDTITL 86 (86)
T ss_pred cccccEeeC
Confidence 889999873
No 357
>KOG1534|consensus
Probab=98.43 E-value=1.6e-06 Score=73.97 Aligned_cols=127 Identities=20% Similarity=0.255 Sum_probs=74.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeee--------------------EE--
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHI--------------------EY-- 70 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~--------------------~~-- 70 (396)
.-..++|+.||||||.++.+.......++..-. ..+|...+.-....+++.... .+
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~v--VNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEy 81 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHV--VNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEY 81 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHHHHHhhCceeEE--eecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHH
Confidence 456789999999999999998766555432111 113333222233333332110 00
Q ss_pred ----------eeC--CeeEEEEecCC------hhhhHHHHHhhhhcC---CEEEEEEecCCCCChhHH------HHHHHH
Q psy15217 71 ----------ETK--ARHYAHVDCPG------HADYIKNMITGAAQM---DGAILVCSAADGPMPQTR------EHILLA 123 (396)
Q Consensus 71 ----------~~~--~~~~~iiDtpG------~~~~~~~~~~~~~~~---d~~llVvda~~g~~~qt~------e~l~~~ 123 (396)
+.. ...|.++|+|| |-.-+++.+..+.+- -++++++|+.= +...++ ..+...
T Consensus 82 l~~NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf-~vD~~KfiSG~lsAlsAM 160 (273)
T KOG1534|consen 82 LLENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQF-LVDSTKFISGCLSALSAM 160 (273)
T ss_pred HHHHHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccch-hhhHHHHHHHHHHHHHHH
Confidence 111 34689999999 455577777777653 35677777642 222222 223334
Q ss_pred HHcCCCeEEEEEeccCCCCH
Q psy15217 124 RQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 124 ~~~~ip~iIvviNK~D~~~~ 143 (396)
..+.+|++=| ++|||+...
T Consensus 161 i~lE~P~INv-lsKMDLlk~ 179 (273)
T KOG1534|consen 161 ISLEVPHINV-LSKMDLLKD 179 (273)
T ss_pred HHhcCcchhh-hhHHHHhhh
Confidence 4568998874 799998764
No 358
>KOG0096|consensus
Probab=98.42 E-value=9.3e-07 Score=74.05 Aligned_cols=140 Identities=20% Similarity=0.124 Sum_probs=90.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEE--eeeeEEeeC--CeeEEEEecCCh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN--TAHIEYETK--ARHYAHVDCPGH 85 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~--~~~~~~~~~--~~~~~iiDtpG~ 85 (396)
.+..+++++|..+.||+|+..+.+...-+. ..-.|+. .....|.++ .-.+..|||.|+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~------------------~y~at~Gv~~~pl~f~tn~g~irf~~wdtagq 69 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEK------------------TYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQ 69 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhccccee------------------cccCcceeEEeeeeeecccCcEEEEeeecccc
Confidence 578999999999999999999876543222 1122222 222233322 246788999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCC--hhHHHHHHHHHHc-CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPM--PQTREHILLARQV-GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~--~qt~e~l~~~~~~-~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
++|......+.-++.+|+++.|...... .-.+-|-.+++.. ++| |+++-||.|.-..+ ++.+--.+.
T Consensus 70 Ek~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiP-iv~cGNKvDi~~r~-----~k~k~v~~~---- 139 (216)
T KOG0096|consen 70 EKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIP-IVLCGNKVDIKARK-----VKAKPVSFH---- 139 (216)
T ss_pred eeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCC-eeeeccceeccccc-----cccccceee----
Confidence 9998888888888999999999886433 2233343444433 578 77788999976542 111111111
Q ss_pred CCCCCCeEEEeccccc
Q psy15217 163 FPGNDIPIIKGSAKLA 178 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g 178 (396)
...++.++.+||+..
T Consensus 140 -rkknl~y~~iSaksn 154 (216)
T KOG0096|consen 140 -RKKNLQYYEISAKSN 154 (216)
T ss_pred -ecccceeEEeecccc
Confidence 114577999999875
No 359
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=4.9e-06 Score=77.79 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=53.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeE--------------Ee----eC
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE--------------YE----TK 73 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~--------------~~----~~ 73 (396)
.++++|+|-+++|||||.++|+....+.....+ .||+..... +. .-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF----------------~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~ 65 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPF----------------CTIEPNVGVVYVPDCRLDELAEIVKCPPKIR 65 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCc----------------ccccCCeeEEecCchHHHHHHHhcCCCCcEE
Confidence 378999999999999999999976533222211 122211100 00 01
Q ss_pred CeeEEEEecCCh-------hhhHHHHHhhhhcCCEEEEEEecCC
Q psy15217 74 ARHYAHVDCPGH-------ADYIKNMITGAAQMDGAILVCSAAD 110 (396)
Q Consensus 74 ~~~~~iiDtpG~-------~~~~~~~~~~~~~~d~~llVvda~~ 110 (396)
...+.|+|.+|- +-.-...+.-++.+|+++.|||+..
T Consensus 66 ~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 66 PAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 124679999992 3344556667788999999999974
No 360
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.42 E-value=2.8e-06 Score=82.25 Aligned_cols=127 Identities=20% Similarity=0.163 Sum_probs=70.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCCh--------h-HhhcCceEEeeeeE------------
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP--------E-EKARGITINTAHIE------------ 69 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~--------~-e~~~g~t~~~~~~~------------ 69 (396)
++..|+++|..|+||||++..|.......+...... ..|... . ....++........
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV--~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~ 176 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV--CADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVE 176 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE--cCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHH
Confidence 456899999999999999999986554433211111 122211 1 11123322211000
Q ss_pred -EeeCCeeEEEEecCChhh----hHHHHHhh--hhcCCEEEEEEecCCCCChhHHHHHHHHH-HcCCCeEEEEEeccCCC
Q psy15217 70 -YETKARHYAHVDCPGHAD----YIKNMITG--AAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKADMV 141 (396)
Q Consensus 70 -~~~~~~~~~iiDtpG~~~----~~~~~~~~--~~~~d~~llVvda~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~D~~ 141 (396)
+...++.+.|+||||... .+..+... ...+|-++||+||..|-.. ...+.... ..++.- + ++||+|..
T Consensus 177 ~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g-~-IlTKlD~~ 252 (429)
T TIGR01425 177 KFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGS-V-IITKLDGH 252 (429)
T ss_pred HHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcE-E-EEECccCC
Confidence 011357899999999543 33333333 2357899999999875322 22222222 245553 3 46999986
Q ss_pred CH
Q psy15217 142 DD 143 (396)
Q Consensus 142 ~~ 143 (396)
..
T Consensus 253 ar 254 (429)
T TIGR01425 253 AK 254 (429)
T ss_pred CC
Confidence 53
No 361
>KOG3905|consensus
Probab=98.40 E-value=5.8e-06 Score=75.07 Aligned_cols=159 Identities=23% Similarity=0.274 Sum_probs=95.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEE--e-cCChhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHV--D-CPGHADY 88 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ii--D-tpG~~~~ 88 (396)
.-+|.++|..++|||||+..|-+... --.+....|.+++-+.+.|+. -.++.+| | -++|...
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e~-~KkgsgLeY~yl~V~de~RDd--------------~tr~~VWiLDGd~~h~~L 116 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSET-VKKGSGLEYLYLHVHDEDRDD--------------LTRCNVWILDGDLYHKGL 116 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhcccc-cCCCCCcceEEEecccccchh--------------hhhcceEEecCchhhhhH
Confidence 45899999999999999999976531 112222223333333333221 1122222 2 2457777
Q ss_pred HHHHHhhhhcCCE-EEEEEecCCCCC--hh-------HHHHHH-------------------------------------
Q psy15217 89 IKNMITGAAQMDG-AILVCSAADGPM--PQ-------TREHIL------------------------------------- 121 (396)
Q Consensus 89 ~~~~~~~~~~~d~-~llVvda~~g~~--~q-------t~e~l~------------------------------------- 121 (396)
++-.+...+.++. +||++|.+.... .+ .+||+.
T Consensus 117 Lk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r 196 (473)
T KOG3905|consen 117 LKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRR 196 (473)
T ss_pred HhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccc
Confidence 7666666666654 556666665321 11 122211
Q ss_pred --------------------HHHHcCCCeEEEEEeccCCCCH--------HHHHHHHHHHHHHHHhhcCCCCCCCeEEEe
Q psy15217 122 --------------------LARQVGVPYIVVFLNKADMVDD--------EELLELVEIEIRELLNKYEFPGNDIPIIKG 173 (396)
Q Consensus 122 --------------------~~~~~~ip~iIvviNK~D~~~~--------~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~ 173 (396)
+...+|+|.+ ||++|+|...- ++-+..+...++.|+-.+|- ..|..
T Consensus 197 ~t~~~~~~de~~llPL~~dtLt~NlGi~vl-VV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-----aLiyT 270 (473)
T KOG3905|consen 197 TTVVGSSADEHVLLPLGQDTLTHNLGIPVL-VVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-----ALIYT 270 (473)
T ss_pred cccccCccccccccccCCcchhhcCCCcEE-EEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-----eeEEe
Confidence 1123588955 56799998431 45566777788999888774 58999
Q ss_pred cccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 174 SAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 174 Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
|++.. .+++-|.++|...
T Consensus 271 SvKE~----------KNidllyKYivhr 288 (473)
T KOG3905|consen 271 SVKET----------KNIDLLYKYIVHR 288 (473)
T ss_pred ecccc----------cchHHHHHHHHHH
Confidence 99875 5788888888653
No 362
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.39 E-value=6.9e-07 Score=75.40 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=39.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG 84 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG 84 (396)
..++|+++|.+|+|||||+|+|.+...... ....|.|........ ...+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~---------------~~~~g~T~~~~~~~~---~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV---------------APIPGETKVWQYITL---MKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceee---------------CCCCCeeEeEEEEEc---CCCEEEEECcC
Confidence 468899999999999999999986432111 112366665543332 24589999999
No 363
>KOG1954|consensus
Probab=98.37 E-value=2.2e-05 Score=72.67 Aligned_cols=133 Identities=21% Similarity=0.149 Sum_probs=80.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhh---hcCCc--cccccccCCChhHhhcCceEEee-eeEE----------------
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSK---KFGGE--AKSYDQIDAAPEEKARGITINTA-HIEY---------------- 70 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~---~~~~~--~~~~~~~d~~~~e~~~g~t~~~~-~~~~---------------- 70 (396)
.-|.++|.-..||||+++.|+..... .|... .+...+|.-..++.-.|.+.-.. ...|
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 45889999999999999999865321 11111 11122233333333334443221 0111
Q ss_pred -eeC---CeeEEEEecCChhhhHHH-----------HHhhhhcCCEEEEEEecCC-CCChhHHHHHHHHHHcCCCeEEEE
Q psy15217 71 -ETK---ARHYAHVDCPGHADYIKN-----------MITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVF 134 (396)
Q Consensus 71 -~~~---~~~~~iiDtpG~~~~~~~-----------~~~~~~~~d~~llVvda~~-g~~~qt~e~l~~~~~~~ip~iIvv 134 (396)
... -..++|+||||.-.-.+. ..=.+..+|.++|+.|+.. .+.....+.+..++...-+ +-||
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edk-iRVV 217 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDK-IRVV 217 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcce-eEEE
Confidence 111 135899999994332222 2223557999999999986 5567778887777776555 5557
Q ss_pred EeccCCCCHHHH
Q psy15217 135 LNKADMVDDEEL 146 (396)
Q Consensus 135 iNK~D~~~~~~~ 146 (396)
+||.|.++.++.
T Consensus 218 LNKADqVdtqqL 229 (532)
T KOG1954|consen 218 LNKADQVDTQQL 229 (532)
T ss_pred eccccccCHHHH
Confidence 899999998553
No 364
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.37 E-value=1.4e-05 Score=75.34 Aligned_cols=74 Identities=19% Similarity=0.274 Sum_probs=52.8
Q ss_pred eeEEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCC-----------ChhHHHHHHHHHH----cCCCeE
Q psy15217 67 HIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-----------MPQTREHILLARQ----VGVPYI 131 (396)
Q Consensus 67 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~-----------~~qt~e~l~~~~~----~~ip~i 131 (396)
...+..++..+.+||++|+....+.+......++++++|+|.++-. ...+++.+..+.. .+.| +
T Consensus 153 ~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~p-i 231 (317)
T cd00066 153 ETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTS-I 231 (317)
T ss_pred EEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCC-E
Confidence 3345667788899999999999999999999999999999998621 1222222222222 2677 5
Q ss_pred EEEEeccCCC
Q psy15217 132 VVFLNKADMV 141 (396)
Q Consensus 132 IvviNK~D~~ 141 (396)
+++.||.|+.
T Consensus 232 ll~~NK~D~f 241 (317)
T cd00066 232 ILFLNKKDLF 241 (317)
T ss_pred EEEccChHHH
Confidence 5567999953
No 365
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.36 E-value=2.4e-06 Score=74.60 Aligned_cols=126 Identities=22% Similarity=0.235 Sum_probs=72.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChh---H------hhcCceEEeeee-------------EE
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE---E------KARGITINTAHI-------------EY 70 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~---e------~~~g~t~~~~~~-------------~~ 70 (396)
..|+++|+.|+||||.+..|......++...... ..|.... | +.-|+....... .+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li--s~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI--SADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE--EESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceee--cCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 4689999999999999999987655442221111 1232210 0 111332221110 01
Q ss_pred eeCCeeEEEEecCChhhh----HHHHHhh--hhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 71 ETKARHYAHVDCPGHADY----IKNMITG--AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 71 ~~~~~~~~iiDtpG~~~~----~~~~~~~--~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
..++..+.||||||...+ +..+... ....+-.+||+||+.+.. ...+........++..+| +||+|....
T Consensus 80 ~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~-~~~~~~~~~~~~~~~~lI--lTKlDet~~ 155 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE-DLEQALAFYEAFGIDGLI--LTKLDETAR 155 (196)
T ss_dssp HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH-HHHHHHHHHHHSSTCEEE--EESTTSSST
T ss_pred hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH-HHHHHHHHhhcccCceEE--EEeecCCCC
Confidence 124467999999995443 2222222 226789999999987543 233444555667888665 599998765
No 366
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.36 E-value=3.5e-06 Score=80.27 Aligned_cols=130 Identities=18% Similarity=0.170 Sum_probs=70.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCC---hhHhh------cCceEEeeeeE-------EeeCCe
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAA---PEEKA------RGITINTAHIE-------YETKAR 75 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~---~~e~~------~g~t~~~~~~~-------~~~~~~ 75 (396)
.-.++++|++|+||||++..|........+.........|.. ..|.- .|+........ .+..++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 458899999999999999999876433211111111112222 11211 24333221110 123567
Q ss_pred eEEEEecCChh---hhHHHHHhhhh---cCCEEEEEEecCCCCChhHHHHHHHHHHc--------CCCeEEEEEeccCCC
Q psy15217 76 HYAHVDCPGHA---DYIKNMITGAA---QMDGAILVCSAADGPMPQTREHILLARQV--------GVPYIVVFLNKADMV 141 (396)
Q Consensus 76 ~~~iiDtpG~~---~~~~~~~~~~~---~~d~~llVvda~~g~~~qt~e~l~~~~~~--------~ip~iIvviNK~D~~ 141 (396)
.+.||||||.. +.....+..+. .++-.+||++|+.+....+.-...+.... ++..+| +||+|..
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I--~TKlDEt 294 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCI--LTKLDEA 294 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEE--EeccccC
Confidence 89999999954 33333333332 34567999999986544332222222222 244443 5999987
Q ss_pred CH
Q psy15217 142 DD 143 (396)
Q Consensus 142 ~~ 143 (396)
..
T Consensus 295 ~~ 296 (374)
T PRK14722 295 SN 296 (374)
T ss_pred CC
Confidence 54
No 367
>KOG1533|consensus
Probab=98.35 E-value=2.6e-06 Score=74.01 Aligned_cols=127 Identities=20% Similarity=0.299 Sum_probs=70.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEe-------------------e-------
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT-------------------A------- 66 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-------------------~------- 66 (396)
+-.+++|++||||||.++-+.......++....-+ +|...+-......+++ +
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVN--LDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~ 80 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVN--LDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEY 80 (290)
T ss_pred cceEEEcCCCCCccchhhhHHHHHHHhCCceEEEe--cCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHH
Confidence 34579999999999999998887777665432111 2221111111111110 0
Q ss_pred --------eeEEeeCCeeEEEEecCCh------hhhHHHHHhhhhcCCEEEEEE---ecCCCCCh-h----HHHHHHHHH
Q psy15217 67 --------HIEYETKARHYAHVDCPGH------ADYIKNMITGAAQMDGAILVC---SAADGPMP-Q----TREHILLAR 124 (396)
Q Consensus 67 --------~~~~~~~~~~~~iiDtpG~------~~~~~~~~~~~~~~d~~llVv---da~~g~~~-q----t~e~l~~~~ 124 (396)
...++....++.++|+||+ .+-.....+.+...|+-+.+| |+.---.+ + ..-.+.-+.
T Consensus 81 l~~~idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl 160 (290)
T KOG1533|consen 81 LEANIDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML 160 (290)
T ss_pred HHhhhHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH
Confidence 0012334568999999994 444566666666677666655 44321111 1 122222333
Q ss_pred HcCCCeEEEEEeccCCCC
Q psy15217 125 QVGVPYIVVFLNKADMVD 142 (396)
Q Consensus 125 ~~~ip~iIvviNK~D~~~ 142 (396)
.+..|++=| +.|+|+..
T Consensus 161 ~melphVNv-lSK~Dl~~ 177 (290)
T KOG1533|consen 161 HMELPHVNV-LSKADLLK 177 (290)
T ss_pred hhcccchhh-hhHhHHHH
Confidence 457898874 79999753
No 368
>KOG1486|consensus
Probab=98.34 E-value=1.4e-06 Score=76.40 Aligned_cols=86 Identities=22% Similarity=0.195 Sum_probs=63.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh--
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY-- 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-- 88 (396)
..-+|+++|-+.+|||||+..++...++.....+ .|.......+++++..+.++|.||.-.-
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeF----------------TTLtcIpGvi~y~ga~IQllDLPGIieGAs 124 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEF----------------TTLTCIPGVIHYNGANIQLLDLPGIIEGAS 124 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceee----------------eEEEeecceEEecCceEEEecCcccccccc
Confidence 4679999999999999999999875444322211 3444445567788999999999994221
Q ss_pred -----HHHHHhhhhcCCEEEEEEecCCCC
Q psy15217 89 -----IKNMITGAAQMDGAILVCSAADGP 112 (396)
Q Consensus 89 -----~~~~~~~~~~~d~~llVvda~~g~ 112 (396)
-+..+..++.||.++.|.||+...
T Consensus 125 qgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 125 QGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred cCCCCCceEEEEeecccEEEEEecCCcch
Confidence 334555577899999999998744
No 369
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.32 E-value=4.3e-06 Score=79.51 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=55.1
Q ss_pred eeeeEEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCC-----------ChhHHHHHHHHHH----cCCC
Q psy15217 65 TAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-----------MPQTREHILLARQ----VGVP 129 (396)
Q Consensus 65 ~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~-----------~~qt~e~l~~~~~----~~ip 129 (396)
.....+...+..+.+||.+|+..+.+.+......++++++|+|.++-- ...+.+.+..+.. .+.|
T Consensus 174 i~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~p 253 (342)
T smart00275 174 IQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTS 253 (342)
T ss_pred eEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCc
Confidence 334456667788899999999999999999999999999999998621 2333333333322 2567
Q ss_pred eEEEEEeccCCC
Q psy15217 130 YIVVFLNKADMV 141 (396)
Q Consensus 130 ~iIvviNK~D~~ 141 (396)
++++.||.|+.
T Consensus 254 -iil~~NK~D~~ 264 (342)
T smart00275 254 -IILFLNKIDLF 264 (342)
T ss_pred -EEEEEecHHhH
Confidence 55567999975
No 370
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.32 E-value=8.6e-06 Score=60.91 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=56.1
Q ss_pred EEEEEe---eCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCC
Q psy15217 217 VEDVFS---ISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDV 289 (396)
Q Consensus 217 i~~~~~---~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i 289 (396)
|+.+.. .+..|.+..+||.+|+|+.||.|+.... ..+.++..|... +.++++|.|||++++. ++ .++
T Consensus 3 vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~--~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~--gl--~~~ 76 (85)
T cd03689 3 VFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRL--GKEVRLSNPQQFFAQDRETVDEAYPGDIIGLV--NP--GNF 76 (85)
T ss_pred EEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCC--CCEEEeeEeEEEecCCeeEcCEECCCCEEEEE--CC--CCc
Confidence 344444 6778999999999999999999987542 234456666543 4688999999999983 33 468
Q ss_pred CCCeEEec
Q psy15217 290 ERGQVLAK 297 (396)
Q Consensus 290 ~~G~vl~~ 297 (396)
+.||+||+
T Consensus 77 ~~Gdtl~~ 84 (85)
T cd03689 77 QIGDTLTE 84 (85)
T ss_pred cccCEeeC
Confidence 89999984
No 371
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.31 E-value=1.1e-06 Score=75.12 Aligned_cols=56 Identities=21% Similarity=0.421 Sum_probs=40.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG 84 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG 84 (396)
..++++++|.+++|||||+|+|++...... ....|+|.......+ +..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~---------------~~~pg~T~~~~~~~~---~~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNV---------------GATPGVTKSMQEVHL---DKKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCccccee---------------cCCCCeEcceEEEEe---CCCEEEEECcC
Confidence 358999999999999999999996532211 112377776554443 24689999999
No 372
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.31 E-value=8.4e-06 Score=76.58 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=70.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCCh---------hHhhcCceEEeeee-------------
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---------EEKARGITINTAHI------------- 68 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---------~e~~~g~t~~~~~~------------- 68 (396)
+.-.++++|..|+||||++..|.......++..... ..|... ....+++.+-....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li--~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA--AGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE--ecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 456889999999999999999987665443221111 112211 12233443322110
Q ss_pred EEeeCCeeEEEEecCChhhh-------HHHHHhhh-----hcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEe
Q psy15217 69 EYETKARHYAHVDCPGHADY-------IKNMITGA-----AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLN 136 (396)
Q Consensus 69 ~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~-----~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviN 136 (396)
.....++.+.|+||||.... ++.+...+ ..++..+||+||+.|..... +........++..+ ++|
T Consensus 191 ~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a~~f~~~~~~~gi--IlT 267 (318)
T PRK10416 191 AAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QAKAFHEAVGLTGI--ILT 267 (318)
T ss_pred HHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HHHHHHhhCCCCEE--EEE
Confidence 00124578999999995332 22222221 24788999999997543222 22222233455533 469
Q ss_pred ccCCCCH
Q psy15217 137 KADMVDD 143 (396)
Q Consensus 137 K~D~~~~ 143 (396)
|+|....
T Consensus 268 KlD~t~~ 274 (318)
T PRK10416 268 KLDGTAK 274 (318)
T ss_pred CCCCCCC
Confidence 9997653
No 373
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.31 E-value=1e-05 Score=69.33 Aligned_cols=125 Identities=20% Similarity=0.185 Sum_probs=67.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChh---H------hhcCceEEeeeeE-------------Ee
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE---E------KARGITINTAHIE-------------YE 71 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~---e------~~~g~t~~~~~~~-------------~~ 71 (396)
.++++|.+|+||||++..|.......+.... ....|.... + ...|..+...... ..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~--~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVL--LVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE--EEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999988765544432111 111222111 0 0112222111000 01
Q ss_pred eCCeeEEEEecCChhh----hHHHHHhhh--hcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 72 TKARHYAHVDCPGHAD----YIKNMITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 72 ~~~~~~~iiDtpG~~~----~~~~~~~~~--~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
..++.+.++||||... .+..+.... ...|.+++|+|+..+. ........+....++..+ ++||+|....
T Consensus 80 ~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~-~~~~~~~~~~~~~~~~~v--iltk~D~~~~ 154 (173)
T cd03115 80 EENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ-DAVNQAKAFNEALGITGV--ILTKLDGDAR 154 (173)
T ss_pred hCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh-HHHHHHHHHHhhCCCCEE--EEECCcCCCC
Confidence 2356789999999753 333332222 2489999999996533 222223333345565433 4699998764
No 374
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.30 E-value=4.4e-06 Score=72.87 Aligned_cols=106 Identities=15% Similarity=0.085 Sum_probs=63.6
Q ss_pred CChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHH-HHHhhc
Q psy15217 83 PGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIR-ELLNKY 161 (396)
Q Consensus 83 pG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~-~~l~~~ 161 (396)
|.+..|.......+..+|++++|+|+.+.......+ + .....+.|. ++++||+|+.+.+...+....... ...+..
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~-l-~~~~~~~~~-ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPR-L-RLFGGNNPV-ILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchh-H-HHhcCCCcE-EEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence 344445666667778899999999998743222222 2 122346674 456899999754221121211110 111222
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
++. ..+++++||+++ .++++|++++...++
T Consensus 96 ~~~--~~~i~~vSA~~~----------~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLK--PKDVILISAKKG----------WGVEELINAIKKLAK 125 (190)
T ss_pred CCC--cccEEEEECCCC----------CCHHHHHHHHHHHhh
Confidence 321 235899999997 589999999988764
No 375
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.30 E-value=3.7e-06 Score=72.01 Aligned_cols=98 Identities=21% Similarity=0.214 Sum_probs=65.8
Q ss_pred CCh-hhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 83 PGH-ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 83 pG~-~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
||| .+.+.++...+..+|.+++|+|+.++......+.+..+ .+.|.+ +++||+|+.+.+.. . +..++++..
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~i-lVlNK~Dl~~~~~~----~-~~~~~~~~~ 74 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRI-IVLNKADLADPKKT----K-KWLKYFESK 74 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEE-EEEehhhcCChHHH----H-HHHHHHHhc
Confidence 776 56778888889999999999999876554433333322 356755 56899999765321 1 121222222
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
..+++++||+++ .++++|++.+...++
T Consensus 75 -----~~~vi~iSa~~~----------~gi~~L~~~l~~~l~ 101 (171)
T cd01856 75 -----GEKVLFVNAKSG----------KGVKKLLKAAKKLLK 101 (171)
T ss_pred -----CCeEEEEECCCc----------ccHHHHHHHHHHHHH
Confidence 145899999987 588999998887654
No 376
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.30 E-value=9.4e-06 Score=60.17 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=55.3
Q ss_pred EEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCC
Q psy15217 215 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVE 290 (396)
Q Consensus 215 ~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~ 290 (396)
..|.++...+. |.+..+||.+|+|++||.|+....+ .+.+|..|... ..+++++.|||++++ .++ . ++
T Consensus 3 a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~--~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i--~g~--~-~~ 74 (81)
T cd04091 3 GLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTG--KKVRVPRLVRMHSNEMEEVEEAGAGDICAI--FGI--D-CA 74 (81)
T ss_pred EEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCC--CEEEEeEEEEEeCCCceEccEECCCCEEEE--ECC--C-cc
Confidence 44555555554 9999999999999999999886432 34556666443 468899999998885 554 3 88
Q ss_pred CCeEEe
Q psy15217 291 RGQVLA 296 (396)
Q Consensus 291 ~G~vl~ 296 (396)
.||+|+
T Consensus 75 ~Gdtl~ 80 (81)
T cd04091 75 SGDTFT 80 (81)
T ss_pred cCCEec
Confidence 999986
No 377
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.29 E-value=8.1e-06 Score=77.53 Aligned_cols=127 Identities=20% Similarity=0.166 Sum_probs=72.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCCh---hH--h----hcCceEEeeee---------EEe-e
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---EE--K----ARGITINTAHI---------EYE-T 72 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~e--~----~~g~t~~~~~~---------~~~-~ 72 (396)
+..|+++|..|+||||++..|.......+..... ...|... .| + .-|+.+..... .+. .
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVgl--I~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGF--ITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEE--EecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 4689999999999999999998665433321111 1122221 11 1 11222221100 001 1
Q ss_pred CCeeEEEEecCChhh----hHHHHHhhh--hcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 73 KARHYAHVDCPGHAD----YIKNMITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~----~~~~~~~~~--~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
.+..+.||||||... .+..+...+ ..+|..+||+||+.+. ....+.+......++..+| +||+|....
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~idglI--~TKLDET~k 392 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHIDGIV--FTKFDETAS 392 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCCCCEEE--EEcccCCCC
Confidence 145799999999533 344443333 2468899999997533 2224455555567888665 599998764
No 378
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.28 E-value=6.5e-06 Score=75.70 Aligned_cols=128 Identities=22% Similarity=0.217 Sum_probs=70.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCCh---hH------hhcCceEEee-------ee-----
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---EE------KARGITINTA-------HI----- 68 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~e------~~~g~t~~~~-------~~----- 68 (396)
++...++++|..|+||||++..|.......+...... ..|... .| ...|+.+-.. ..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li--~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA--AGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE--eCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 3456788999999999999999986654433211110 122210 11 2223322110 00
Q ss_pred -EEeeCCeeEEEEecCChhhhHHHHH-------hhh-----hcCCEEEEEEecCCCCChhHHHHH-HHHHHcCCCeEEEE
Q psy15217 69 -EYETKARHYAHVDCPGHADYIKNMI-------TGA-----AQMDGAILVCSAADGPMPQTREHI-LLARQVGVPYIVVF 134 (396)
Q Consensus 69 -~~~~~~~~~~iiDtpG~~~~~~~~~-------~~~-----~~~d~~llVvda~~g~~~qt~e~l-~~~~~~~ip~iIvv 134 (396)
.....++.+.|+||||....-...+ ... ..+|..+||+|+..+. .+.+.+ ......++..+ +
T Consensus 148 ~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~~~g~--I 223 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQAKVFNEAVGLTGI--I 223 (272)
T ss_pred HHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHHHHHHhhCCCCEE--E
Confidence 0012457899999999654322221 111 1389999999998642 222333 23334566544 3
Q ss_pred EeccCCCCH
Q psy15217 135 LNKADMVDD 143 (396)
Q Consensus 135 iNK~D~~~~ 143 (396)
+||+|....
T Consensus 224 lTKlDe~~~ 232 (272)
T TIGR00064 224 LTKLDGTAK 232 (272)
T ss_pred EEccCCCCC
Confidence 699998654
No 379
>PRK14974 cell division protein FtsY; Provisional
Probab=98.24 E-value=9.5e-06 Score=76.52 Aligned_cols=127 Identities=19% Similarity=0.176 Sum_probs=70.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCCh---------hHhhcCceEEeeee-------------
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---------EEKARGITINTAHI------------- 68 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---------~e~~~g~t~~~~~~------------- 68 (396)
++..|+++|.+|+||||++..|.......+..... ...|... .-..-|+.+.....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~l--i~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVI--AAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE--ecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 45789999999999999999998765444321111 1112111 01112332211100
Q ss_pred EEeeCCeeEEEEecCChhh----hHHHHHhh--hhcCCEEEEEEecCCCCChhHHHHHHHH-HHcCCCeEEEEEeccCCC
Q psy15217 69 EYETKARHYAHVDCPGHAD----YIKNMITG--AAQMDGAILVCSAADGPMPQTREHILLA-RQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 69 ~~~~~~~~~~iiDtpG~~~----~~~~~~~~--~~~~d~~llVvda~~g~~~qt~e~l~~~-~~~~ip~iIvviNK~D~~ 141 (396)
.....++.+.|+||||... ++..+... ...+|..+||+|+..|- ...+.+... ...++..+| +||+|..
T Consensus 217 ~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~giI--lTKlD~~ 292 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGIDGVI--LTKVDAD 292 (336)
T ss_pred HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCCEEE--EeeecCC
Confidence 0012346799999999543 33333222 23689999999998752 222223222 346776443 6999987
Q ss_pred CH
Q psy15217 142 DD 143 (396)
Q Consensus 142 ~~ 143 (396)
..
T Consensus 293 ~~ 294 (336)
T PRK14974 293 AK 294 (336)
T ss_pred CC
Confidence 54
No 380
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.23 E-value=1.4e-06 Score=72.84 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=34.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhH--hhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEE--KARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e--~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
-.++++|+.|+|||||+|.|+.......+ ..... +.+.+|.....+.+ + ....++||||..+|
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~----------~is~~~~rGkHTTt~~~l~~l--~-~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTG----------EISEKTGRGKHTTTHRELFPL--P-DGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S------------------------SEEEEEE--T-TSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhh----------hhhcccCCCcccCCCeeEEec--C-CCcEEEECCCCCcc
Confidence 57899999999999999999875322211 11111 22233433333333 2 23589999997765
No 381
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.20 E-value=6.2e-06 Score=72.00 Aligned_cols=66 Identities=24% Similarity=0.291 Sum_probs=50.0
Q ss_pred CCeeEEEEec-CChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 73 KARHYAHVDC-PGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 73 ~~~~~~iiDt-pG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
+.+.+.++|| +|-+.|.+-+. ..+|.++.|+|++.....-.+..-.++..++++++.+++||+|..
T Consensus 132 ~~~e~VivDtEAGiEHfgRg~~---~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRGTI---EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCcEEEEecccchhhhccccc---cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 3467888998 45666654443 358999999999875555566667788889988888899999965
No 382
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.19 E-value=9.8e-06 Score=68.33 Aligned_cols=89 Identities=18% Similarity=0.071 Sum_probs=56.4
Q ss_pred HhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15217 93 ITGAAQMDGAILVCSAADGPMPQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 170 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~ 170 (396)
...+..+|.+++|+|+......+..+....+... +.|.+ +++||+|+.+.++. ...+..+-+. + ..-+
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~i-lVlNKiDl~~~~~~----~~~~~~~~~~--~---~~~~ 72 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLI-FVLNKCDLVPTWVT----ARWVKILSKE--Y---PTIA 72 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEE-EEEEchhcCCHHHH----HHHHHHHhcC--C---cEEE
Confidence 4566789999999999986544444444444433 47755 56899999875332 1112222221 1 1226
Q ss_pred EEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 171 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 171 i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
+++||+.+ .++.+|++.+.++
T Consensus 73 ~~iSa~~~----------~~~~~L~~~l~~~ 93 (157)
T cd01858 73 FHASINNP----------FGKGSLIQLLRQF 93 (157)
T ss_pred EEeecccc----------ccHHHHHHHHHHH
Confidence 88999987 4788888888764
No 383
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.13 E-value=1.2e-05 Score=74.47 Aligned_cols=98 Identities=19% Similarity=0.170 Sum_probs=64.0
Q ss_pred CChh-hhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 83 PGHA-DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 83 pG~~-~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
|||- +-.+.+...+..+|.+++|+||.........+....+ .+.| +|+++||+|+.+..... ...+.++..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp-~IiVlNK~DL~~~~~~~-----~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKP-RLIVLNKADLADPAVTK-----QWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCC-EEEEEEccccCCHHHHH-----HHHHHHHHc
Confidence 7864 4567777788899999999999875443332222222 2566 45568999998653221 122222322
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+ .+++++||.++ .++.+|++.+.+.++
T Consensus 77 ~-----~~vi~iSa~~~----------~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 77 G-----IKALAINAKKG----------KGVKKIIKAAKKLLK 103 (276)
T ss_pred C-----CeEEEEECCCc----------ccHHHHHHHHHHHHH
Confidence 2 46899999987 578889888877664
No 384
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.12 E-value=1.6e-05 Score=66.16 Aligned_cols=59 Identities=24% Similarity=0.222 Sum_probs=37.4
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccC
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 139 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D 139 (396)
.+..+.|+||||... .....+..||.+++|+....+..-..+ ....+..-.++ ++||+|
T Consensus 90 ~~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~----k~~~~~~~~~~-~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAI----KAGIMEIADIV-VVNKAD 148 (148)
T ss_pred cCCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHh----hhhHhhhcCEE-EEeCCC
Confidence 357899999999653 334567789999999988732211111 12223344466 579998
No 385
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.11 E-value=4.5e-06 Score=69.07 Aligned_cols=54 Identities=24% Similarity=0.360 Sum_probs=35.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~ 85 (396)
+++++|.+|+|||||+++|++...... ....|.|.......+ + ..+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~---------------~~~~~~~~~~~~~~~--~-~~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSV---------------SATPGKTKHFQTIFL--T-PTITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee---------------CCCCCcccceEEEEe--C-CCEEEEECCCc
Confidence 899999999999999999986421110 011244444333333 2 25899999995
No 386
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.11 E-value=5.3e-06 Score=69.82 Aligned_cols=57 Identities=28% Similarity=0.450 Sum_probs=40.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG 84 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG 84 (396)
....+++++|.+++|||||++.|++..... .....|.|.......+. ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~---------------~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK---------------VGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc---------------ccCCCCcccceEEEEec---CCEEEEECCC
Confidence 346889999999999999999998643211 11223666665544432 4589999999
No 387
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.11 E-value=2.6e-05 Score=76.13 Aligned_cols=128 Identities=21% Similarity=0.193 Sum_probs=70.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChh---------HhhcCceEEeeeeE----------E
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE---------EKARGITINTAHIE----------Y 70 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~---------e~~~g~t~~~~~~~----------~ 70 (396)
.++..|.++|.+|+||||++..|.......+..... ...|.... ....|+........ +
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~l--V~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGL--VAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEE--ecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 346789999999999999999998665544321111 11222111 01123322211000 0
Q ss_pred -eeCCeeEEEEecCChhhhHHHH------HhhhhcCCEEEEEEecCCCCChhHHHHHHHHH-HcCCCeEEEEEeccCCCC
Q psy15217 71 -ETKARHYAHVDCPGHADYIKNM------ITGAAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKADMVD 142 (396)
Q Consensus 71 -~~~~~~~~iiDtpG~~~~~~~~------~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~D~~~ 142 (396)
......+.|+||||....-..+ +..+..+|.+++|+|+..| ....+.+.... .+++.- +++||+|...
T Consensus 171 ~~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~a~~F~~~l~i~g--vIlTKlD~~a 246 (437)
T PRK00771 171 EKFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQAKAFHEAVGIGG--IIITKLDGTA 246 (437)
T ss_pred HHhhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHHHHHHHhcCCCCE--EEEecccCCC
Confidence 0123478999999954432222 2234478999999999886 22333333222 234442 3469999764
Q ss_pred H
Q psy15217 143 D 143 (396)
Q Consensus 143 ~ 143 (396)
.
T Consensus 247 ~ 247 (437)
T PRK00771 247 K 247 (437)
T ss_pred c
Confidence 3
No 388
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.08 E-value=4.5e-06 Score=72.80 Aligned_cols=63 Identities=24% Similarity=0.209 Sum_probs=41.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG 84 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG 84 (396)
..+++++|.+|+|||||+|+|+......... ..........|+|.+.....+.. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~-------~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKL-------KDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhccccccc-------ccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 3589999999999999999998753221100 00011222347888776555532 579999999
No 389
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.08 E-value=2.4e-05 Score=64.71 Aligned_cols=99 Identities=19% Similarity=0.122 Sum_probs=61.0
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 167 (396)
+.....+..+|.+++|+|+.++...+..+....+... +.|.+ +++||+|+.+.++. . ++.+.++..+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~i-ivlNK~DL~~~~~~-~----~~~~~~~~~~----- 71 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNI-LLLNKADLLTEEQR-K----AWAEYFKKEG----- 71 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEE-EEEechhcCCHHHH-H----HHHHHHHhcC-----
Confidence 3455667889999999999987666655555666555 77855 56899999865321 1 2334444333
Q ss_pred CeEEEecccccccCCC-CCCCCCcHHHHHHHhh
Q psy15217 168 IPIIKGSAKLALEGDT-GPLGEQSILSLSKALD 199 (396)
Q Consensus 168 ~~~i~~Sa~~g~~~~~-~~~~~~~~~~Ll~~l~ 199 (396)
.+++++||.++.+... --..+-|=.+|++.+.
T Consensus 72 ~~ii~iSa~~~~~~~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 72 IVVVFFSALKENATIGLVGYPNVGKSSLINALV 104 (141)
T ss_pred CeEEEEEecCCCcEEEEECCCCCCHHHHHHHHh
Confidence 4689999998643100 0011223456777664
No 390
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.08 E-value=2.5e-05 Score=65.64 Aligned_cols=82 Identities=27% Similarity=0.200 Sum_probs=52.3
Q ss_pred CEEEEEEecCCCCChhHHHHH-HHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEeccccc
Q psy15217 100 DGAILVCSAADGPMPQTREHI-LLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLA 178 (396)
Q Consensus 100 d~~llVvda~~g~~~qt~e~l-~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g 178 (396)
|.+++|+|+.+.......... ..+...+.|.+ +++||+|+.+.++..+. +..+ .... ..+++++||.++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~I-iVlNK~Dl~~~~~~~~~----~~~~-~~~~----~~~ii~vSa~~~ 70 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLI-LVLNKADLVPKEVLRKW----LAYL-RHSY----PTIPFKISATNG 70 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEE-EEEechhcCCHHHHHHH----HHHH-HhhC----CceEEEEeccCC
Confidence 789999999875544333333 34555678855 56899999875332211 1122 2111 246899999997
Q ss_pred ccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 179 LEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 179 ~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.++.+|++.+...
T Consensus 71 ----------~gi~~L~~~i~~~ 83 (155)
T cd01849 71 ----------QGIEKKESAFTKQ 83 (155)
T ss_pred ----------cChhhHHHHHHHH
Confidence 5788888887654
No 391
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.06 E-value=1.4e-05 Score=67.39 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=37.3
Q ss_pred CeeEEEEecCChhh---hHHH-----HHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCC
Q psy15217 74 ARHYAHVDCPGHAD---YIKN-----MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM 140 (396)
Q Consensus 74 ~~~~~iiDtpG~~~---~~~~-----~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~ 140 (396)
...+.|+||||-.+ .... ........|.++.++|+.+....... +-....++.-..+| ++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~-~~~~~~Qi~~ad~i-vlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQ-QTEAQSQIAFADRI-LLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhc-cHHHHHHHHHCCEE-EEecccC
Confidence 45678999999532 2222 12234468999999999763321111 11123333444566 4799996
No 392
>PRK10867 signal recognition particle protein; Provisional
Probab=98.06 E-value=5.9e-05 Score=73.58 Aligned_cols=127 Identities=21% Similarity=0.213 Sum_probs=68.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhh-cCCccccccccCCChh---------HhhcCceEEeeee-----------
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKK-FGGEAKSYDQIDAAPE---------EKARGITINTAHI----------- 68 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~-~~~~~~~~~~~d~~~~---------e~~~g~t~~~~~~----------- 68 (396)
.++..|.++|..|+||||++..|....... +...... ..|.... -...|+.+-....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV--~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLV--AADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEE--EccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 346788999999999999999987655544 3221111 1121111 0112333211100
Q ss_pred --EEeeCCeeEEEEecCChh----hhHHHHHhh--hhcCCEEEEEEecCCCCChhHHHHHHHHH-HcCCCeEEEEEeccC
Q psy15217 69 --EYETKARHYAHVDCPGHA----DYIKNMITG--AAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKAD 139 (396)
Q Consensus 69 --~~~~~~~~~~iiDtpG~~----~~~~~~~~~--~~~~d~~llVvda~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~D 139 (396)
.....++.+.|+||||.. ..+...... ...++.++||+|+..| ....+.+.... ..++..+ ++||+|
T Consensus 176 ~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~~~~i~gi--IlTKlD 251 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNEALGLTGV--ILTKLD 251 (433)
T ss_pred HHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHhhCCCCEE--EEeCcc
Confidence 011235679999999943 333332222 2367888999999753 22233332222 3455533 469999
Q ss_pred CCC
Q psy15217 140 MVD 142 (396)
Q Consensus 140 ~~~ 142 (396)
...
T Consensus 252 ~~~ 254 (433)
T PRK10867 252 GDA 254 (433)
T ss_pred Ccc
Confidence 654
No 393
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.05 E-value=1.8e-05 Score=71.75 Aligned_cols=93 Identities=23% Similarity=0.288 Sum_probs=60.7
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCC--ChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGP--MPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~--~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
+|...+...++.+|.+++|+|+.+.. ......++..+...++|.++ ++||+|+.+.....+ +..+.++..+
T Consensus 25 R~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vI-V~NK~DL~~~~~~~~----~~~~~~~~~g-- 97 (245)
T TIGR00157 25 RKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPII-VLNKIDLLDDEDMEK----EQLDIYRNIG-- 97 (245)
T ss_pred ccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE-EEECcccCCCHHHHH----HHHHHHHHCC--
Confidence 33333334578899999999998633 34455556666667888655 579999976432211 1222333333
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhh
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~ 199 (396)
.+++.+||+++ .++.+|++.+.
T Consensus 98 ---~~v~~~SAktg----------~gi~eLf~~l~ 119 (245)
T TIGR00157 98 ---YQVLMTSSKNQ----------DGLKELIEALQ 119 (245)
T ss_pred ---CeEEEEecCCc----------hhHHHHHhhhc
Confidence 57999999997 57888887764
No 394
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.04 E-value=5.1e-05 Score=74.64 Aligned_cols=61 Identities=28% Similarity=0.395 Sum_probs=43.2
Q ss_pred cCCCeEEEEEeccCCCC-------H-HHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHH
Q psy15217 126 VGVPYIVVFLNKADMVD-------D-EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKA 197 (396)
Q Consensus 126 ~~ip~iIvviNK~D~~~-------~-~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~ 197 (396)
+|+| ++||++|.|... + ++.+..+...++.++-.+| ..+|++|.+.. .+++.|+++
T Consensus 195 lGip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-----AsL~yts~~~~----------~n~~~L~~y 258 (472)
T PF05783_consen 195 LGIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-----ASLIYTSVKEE----------KNLDLLYKY 258 (472)
T ss_pred cCcc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-----CeEEEeecccc----------ccHHHHHHH
Confidence 4688 666789999643 2 3455667777888887776 45888998764 477778888
Q ss_pred hhhhC
Q psy15217 198 LDTYI 202 (396)
Q Consensus 198 l~~~l 202 (396)
|...+
T Consensus 259 i~h~l 263 (472)
T PF05783_consen 259 ILHRL 263 (472)
T ss_pred HHHHh
Confidence 76644
No 395
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.02 E-value=0.00013 Score=62.95 Aligned_cols=82 Identities=22% Similarity=0.334 Sum_probs=57.4
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHH
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEI 152 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~ 152 (396)
..+.+.++|||+... ......+..+|.+++++.+...........+..+...+.+.. +++||+|.... ...
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~-vV~N~~~~~~~------~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVG-VVINKYDLNDE------IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEE-EEEeCCCCCcc------hHH
Confidence 467899999997432 234455678999999999987655666777777888888854 56899997543 112
Q ss_pred HHHHHHhhcCC
Q psy15217 153 EIRELLNKYEF 163 (396)
Q Consensus 153 ~~~~~l~~~~~ 163 (396)
++.++++.+++
T Consensus 162 ~~~~~~~~~~~ 172 (179)
T cd03110 162 EIEDYCEEEGI 172 (179)
T ss_pred HHHHHHHHcCC
Confidence 45556666554
No 396
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.01 E-value=2e-05 Score=70.56 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=53.8
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhh--hhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVL--SKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~--~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~ 86 (396)
..+..-|+++|..++|||||+|+|++.. -..+ +. .....+|+-+....... ..+..+.++||||..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~----------~~-~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~ 71 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVM----------DT-SQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTD 71 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEec----------CC-CCCCccceEEEeccccC-CCcceEEEEecCCcC
Confidence 3567789999999999999999998752 1111 00 01112233222111111 235789999999953
Q ss_pred hh------HHHHHhhhhc--CCEEEEEEecCC
Q psy15217 87 DY------IKNMITGAAQ--MDGAILVCSAAD 110 (396)
Q Consensus 87 ~~------~~~~~~~~~~--~d~~llVvda~~ 110 (396)
+. ....+.++.. +|+.|+.++...
T Consensus 72 ~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 72 GRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred ccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 32 2233444444 899999888764
No 397
>KOG0780|consensus
Probab=98.01 E-value=2.3e-05 Score=73.04 Aligned_cols=127 Identities=22% Similarity=0.125 Sum_probs=76.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCcccccc------ccCCChh-HhhcCceEEeeee-------------EEe
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYD------QIDAAPE-EKARGITINTAHI-------------EYE 71 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~------~~d~~~~-e~~~g~t~~~~~~-------------~~~ 71 (396)
+--|.++|-.|+||||.+..|......++......+. ..|.+.. ....++.+..++. .|.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK 180 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK 180 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence 4567899999999999999998776666543322221 2333332 1222344333322 234
Q ss_pred eCCeeEEEEecCCh----hhhHHHHHhh--hhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 72 TKARHYAHVDCPGH----ADYIKNMITG--AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 72 ~~~~~~~iiDtpG~----~~~~~~~~~~--~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
.++..++|+||.|. .....+|..- +..+|-+|+|+||+- +|..+....+....+..--|++||+|-.
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi---GQaae~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI---GQAAEAQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc---cHhHHHHHHHHHHhhccceEEEEecccC
Confidence 56788999999993 2334455443 336899999999987 4555444333333222222346999964
No 398
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.01 E-value=2.1e-05 Score=73.18 Aligned_cols=99 Identities=21% Similarity=0.213 Sum_probs=64.4
Q ss_pred cCChh-hhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 82 CPGHA-DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 82 tpG~~-~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
=|||- +-.++....+..+|++++|+|+.........+...... +.|.+ +++||+|+.+.... + ...++++.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~i-iVlNK~DL~~~~~~-~----~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRL-LILNKSDLADPEVT-K----KWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEE-EEEEchhcCCHHHH-H----HHHHHHHH
Confidence 37874 44666777788999999999998755444333333322 66755 56899999765221 1 22233332
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+ .+++++|+.++ .++..|++.+...++
T Consensus 79 ~~-----~~vi~vSa~~~----------~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 79 QG-----IKALAINAKKG----------QGVKKILKAAKKLLK 106 (287)
T ss_pred cC-----CeEEEEECCCc----------ccHHHHHHHHHHHHH
Confidence 22 46899999986 578888888877654
No 399
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.00 E-value=7.6e-05 Score=68.32 Aligned_cols=128 Identities=22% Similarity=0.196 Sum_probs=71.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCCh--------hH-hhcCceEEeeee---------EE-e
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP--------EE-KARGITINTAHI---------EY-E 71 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~--------~e-~~~g~t~~~~~~---------~~-~ 71 (396)
+.-+++++|..|+||||++..|.......+.... ....|... .. ...+........ .+ .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~--~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG--FITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEE--EEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 3468999999999999999998766433221111 11122221 00 011222211100 00 1
Q ss_pred eCCeeEEEEecCChhh----hHHHHHhhh--hcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 72 TKARHYAHVDCPGHAD----YIKNMITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 72 ~~~~~~~iiDtpG~~~----~~~~~~~~~--~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
..+..+.|+||||... .+..+...+ ..+|-.+||+||+.+. .+..+.+......++..+| +||+|....
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~~~~~~I--~TKlDet~~ 226 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHIDGIV--FTKFDETAS 226 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCCCCCCEEE--EEeecCCCC
Confidence 1256899999999542 344443332 3568899999997532 2233444444556777665 599998764
No 400
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.00 E-value=1.3e-05 Score=74.49 Aligned_cols=58 Identities=28% Similarity=0.335 Sum_probs=40.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~ 85 (396)
++.++++++|.+|+|||||+|+|++......+ ...|+|........ +..+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~---------------~~~g~T~~~~~~~~---~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG---------------NRPGVTKAQQWIKL---GKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC---------------CCCCeEEEEEEEEe---CCcEEEEECCCc
Confidence 35689999999999999999999864321111 12267776654333 245889999994
No 401
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.99 E-value=1.4e-05 Score=68.33 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=39.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~ 85 (396)
..++++++|.+++|||||+++|++...... ....|.|.......+. ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~---------------~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV---------------GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceee---------------cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 457999999999999999999986422110 1112566665554443 45899999994
No 402
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.99 E-value=1.2e-05 Score=74.40 Aligned_cols=57 Identities=26% Similarity=0.345 Sum_probs=39.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~ 85 (396)
+.++++++|.+|+|||||+|+|++......+ ...|+|.......+ +..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~---------------~~~g~T~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVG---------------NRPGVTKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccC---------------CCCCeecceEEEEe---CCCEEEEECCCc
Confidence 4689999999999999999999864221111 12366666554433 235899999995
No 403
>PRK12288 GTPase RsgA; Reviewed
Probab=97.98 E-value=7.6e-06 Score=77.77 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=40.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
.++++|.+|+|||||+|+|++......+... ....+.+.+|.....+.+..+ ..++||||...|
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is--------~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVS--------DNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeecccc--------CcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 3789999999999999999865332211110 011223456666655555433 259999997665
No 404
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=97.98 E-value=9.5e-05 Score=56.33 Aligned_cols=78 Identities=23% Similarity=0.433 Sum_probs=55.2
Q ss_pred EEEEEEEeeC-CCceEEEEEEEeeEEecCCEEEEeecC-------CceeEEEEEEEec----ceeeCeeecCCeEEEEec
Q psy15217 215 LPVEDVFSIS-GRGTVVTGRVERGIVRVGEELEIIGIK-------DTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLR 282 (396)
Q Consensus 215 ~~i~~~~~~~-~~G~v~~g~v~~G~l~~g~~v~~~p~~-------~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~ 282 (396)
+.+..+...+ ..|....+||.+|+|+.||.+++...+ ...+.++..+... ..++++|.|||+|++.
T Consensus 3 ~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~-- 80 (93)
T cd03700 3 MYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV-- 80 (93)
T ss_pred EEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE--
Confidence 3455566666 789999999999999999999876411 2234556666544 3688999999999884
Q ss_pred ccCccCCCCCeEEe
Q psy15217 283 GTKREDVERGQVLA 296 (396)
Q Consensus 283 ~~~~~~i~~G~vl~ 296 (396)
++ .+++.|++.+
T Consensus 81 g~--~~~~~g~~~~ 92 (93)
T cd03700 81 GL--DQLKSGTTAT 92 (93)
T ss_pred CC--ccCceEeEec
Confidence 33 2366676543
No 405
>PRK12289 GTPase RsgA; Reviewed
Probab=97.97 E-value=5.9e-05 Score=71.79 Aligned_cols=83 Identities=25% Similarity=0.356 Sum_probs=57.5
Q ss_pred hhcCCEEEEEEecCCCC-Ch-hHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEe
Q psy15217 96 AAQMDGAILVCSAADGP-MP-QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 173 (396)
Q Consensus 96 ~~~~d~~llVvda~~g~-~~-qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~ 173 (396)
+..+|.+++|+|+.+.. .. +....+..+...++|.++ |+||+|+++.++. + .+.+.+...+ .+++++
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~IL-VlNK~DLv~~~~~-~----~~~~~~~~~g-----~~v~~i 155 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVL-CLNKADLVSPTEQ-Q----QWQDRLQQWG-----YQPLFI 155 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE-EEEchhcCChHHH-H----HHHHHHHhcC-----CeEEEE
Confidence 67899999999998643 22 345566666677899555 6899999875332 1 2333344444 468999
Q ss_pred cccccccCCCCCCCCCcHHHHHHHhh
Q psy15217 174 SAKLALEGDTGPLGEQSILSLSKALD 199 (396)
Q Consensus 174 Sa~~g~~~~~~~~~~~~~~~Ll~~l~ 199 (396)
||.++ .++.+|++.+.
T Consensus 156 SA~tg----------~GI~eL~~~L~ 171 (352)
T PRK12289 156 SVETG----------IGLEALLEQLR 171 (352)
T ss_pred EcCCC----------CCHHHHhhhhc
Confidence 99997 57888888764
No 406
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=7e-05 Score=73.95 Aligned_cols=129 Identities=18% Similarity=0.149 Sum_probs=66.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCCh---hH--hh----cCceEEeeeeE-------EeeCC
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---EE--KA----RGITINTAHIE-------YETKA 74 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~e--~~----~g~t~~~~~~~-------~~~~~ 74 (396)
..-.|+++|..|+||||++..|.........+........|... .| +. -|+........ -...+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 34688999999999999999998654433211111111122211 11 11 12211111000 01245
Q ss_pred eeEEEEecCChhhhHHH------HHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 75 RHYAHVDCPGHADYIKN------MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 75 ~~~~iiDtpG~~~~~~~------~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
+.+.||||||....-.. ++... .....+||++++.+... ..+.+......++. - +++||+|....
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~D-l~eii~~f~~~~~~-g-vILTKlDEt~~ 499 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSD-LDEVVRRFAHAKPQ-G-VVLTKLDETGR 499 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhH-HHHHHHHHHhhCCe-E-EEEecCcCccc
Confidence 78999999995332111 11111 23457888888864322 22333333444433 3 35799998653
No 407
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.95 E-value=8e-06 Score=74.63 Aligned_cols=64 Identities=22% Similarity=0.250 Sum_probs=40.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
..+++|++|+|||||+|+|........+.-. ....+.+.+|.....+.+..++ .++||||...|
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS--------~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEIS--------EKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhc--------ccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 6789999999999999999864322211100 0111334566666666665444 78999997654
No 408
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.95 E-value=3.2e-05 Score=66.69 Aligned_cols=69 Identities=26% Similarity=0.288 Sum_probs=39.3
Q ss_pred CeeEEEEecCChhhhHHH-----HHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHH
Q psy15217 74 ARHYAHVDCPGHADYIKN-----MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE 144 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~-----~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~ 144 (396)
...+.|+.+.|..+-... ........+..+.|+|+..-....... ..+..++....+|| +||+|+++.+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~-~~~~~Qi~~ADvIv-lnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIP-ELLREQIAFADVIV-LNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHC-HHHHHHHCT-SEEE-EE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccch-hhhhhcchhcCEEE-EeccccCChh
Confidence 356889999994332222 112233568999999996632122221 22344455566774 7999999875
No 409
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.95 E-value=5.7e-05 Score=72.54 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=64.5
Q ss_pred hhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 85 HADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 85 ~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
.++|..........++.+++|+|+.+.......+....+ .+.| +++++||+|+.+.+...+.+...++++++..++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~p-iilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~ 126 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNP-VLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK 126 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCC-EEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 567777555555688999999999764322222221111 1556 5667899999764322233444455566666653
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
...++++||+++ .++.+|++.+.++
T Consensus 127 --~~~i~~vSAk~g----------~gv~eL~~~l~~~ 151 (360)
T TIGR03597 127 --PVDIILVSAKKG----------NGIDELLDKIKKA 151 (360)
T ss_pred --cCcEEEecCCCC----------CCHHHHHHHHHHH
Confidence 124899999997 4788888888653
No 410
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=7.1e-05 Score=70.95 Aligned_cols=128 Identities=15% Similarity=0.113 Sum_probs=68.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChh---H------hhcCceEEeeee--E-------Ee-
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE---E------KARGITINTAHI--E-------YE- 71 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~---e------~~~g~t~~~~~~--~-------~~- 71 (396)
+.-.++++|+.|+||||++..|.......+..... ...|.... | ..-++.+....- . +.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~l--ItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGF--ITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE--EeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 45678999999999999999998654333221111 11222110 0 011222111100 0 01
Q ss_pred eCCeeEEEEecCChh----hhHHHHHhhh--hcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 72 TKARHYAHVDCPGHA----DYIKNMITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 72 ~~~~~~~iiDtpG~~----~~~~~~~~~~--~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
..++.+.||||||.. ..+..+.... ..+|..+||+++.... .+..+.+......++..+| +||+|....
T Consensus 283 ~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~-~d~~~i~~~f~~l~i~glI--~TKLDET~~ 357 (407)
T PRK12726 283 VNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS-ADVMTILPKLAEIPIDGFI--ITKMDETTR 357 (407)
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH-HHHHHHHHhcCcCCCCEEE--EEcccCCCC
Confidence 134689999999973 3344433322 2457778888874322 1222333333455666554 599998653
No 411
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=5.8e-05 Score=73.16 Aligned_cols=129 Identities=19% Similarity=0.173 Sum_probs=68.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCC--------Ch-hHhhcCceEEeeee-------EEeeCCe
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDA--------AP-EEKARGITINTAHI-------EYETKAR 75 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~--------~~-~e~~~g~t~~~~~~-------~~~~~~~ 75 (396)
.-.++++|..|+||||++..|.+......+.........|. .. ..+..|+....... .....++
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 45899999999999999999876432111100000000111 00 01112333322111 1123567
Q ss_pred eEEEEecCChhhhHHH---HHh---hhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 76 HYAHVDCPGHADYIKN---MIT---GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 76 ~~~iiDtpG~~~~~~~---~~~---~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
.+.++||+|....... .+. .....+-.+||+||+.+.. ...+.+......++..+| +||+|....
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~-~~~~~~~~f~~~~~~~~I--~TKlDEt~~ 341 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD-TLDEVISAYQGHGIHGCI--ITKVDEAAS 341 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH-HHHHHHHHhcCCCCCEEE--EEeeeCCCC
Confidence 7899999995432221 111 2223567889999985332 122333344456777665 599998764
No 412
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.92 E-value=5.4e-05 Score=72.10 Aligned_cols=130 Identities=20% Similarity=0.181 Sum_probs=73.6
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCcccccc------ccCCChhH-hhcCceEEee-------------ee
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYD------QIDAAPEE-KARGITINTA-------------HI 68 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~------~~d~~~~e-~~~g~t~~~~-------------~~ 68 (396)
.+++..|.++|--||||||.++.|.......+......+. ..+.+..- .+-++..-.. ..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 5678899999999999999999998766554322211110 00111000 0111111110 00
Q ss_pred EEeeCCeeEEEEecCCh----hhhHHHHHh--hhhcCCEEEEEEecCCCCChhHHHHHHHHH--HcCCCeEEEEEeccCC
Q psy15217 69 EYETKARHYAHVDCPGH----ADYIKNMIT--GAAQMDGAILVCSAADGPMPQTREHILLAR--QVGVPYIVVFLNKADM 140 (396)
Q Consensus 69 ~~~~~~~~~~iiDtpG~----~~~~~~~~~--~~~~~d~~llVvda~~g~~~qt~e~l~~~~--~~~ip~iIvviNK~D~ 140 (396)
.+....+.+.|+||+|. +..+.++.. ....+|-.+||+||.. +|.-.....+. ++++--+ ++||+|-
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~---GQdA~~~A~aF~e~l~itGv--IlTKlDG 251 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMI---GQDAVNTAKAFNEALGITGV--ILTKLDG 251 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEeccc---chHHHHHHHHHhhhcCCceE--EEEcccC
Confidence 12234568999999993 333444332 3457899999999986 45444333333 2355533 4799997
Q ss_pred CCH
Q psy15217 141 VDD 143 (396)
Q Consensus 141 ~~~ 143 (396)
...
T Consensus 252 daR 254 (451)
T COG0541 252 DAR 254 (451)
T ss_pred CCc
Confidence 543
No 413
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.92 E-value=1.3e-05 Score=72.69 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=40.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
..++++|++|+|||||+|+|+.......+... ....+.+.+|.....+.+ .+ ..++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~--------~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDIS--------SKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhcccccee--------ccCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 36899999999999999999975432221110 001123346666655555 22 379999996543
No 414
>KOG4423|consensus
Probab=97.91 E-value=2.6e-06 Score=71.19 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=96.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCe---eEEEEecCChhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR---HYAHVDCPGHADY 88 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~---~~~iiDtpG~~~~ 88 (396)
..++.++|.-++|||+++.+......+.. .+ ..+..+.....+.++++ ++.+||..|+++|
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~---yR-------------AtIgvdfalkVl~wdd~t~vRlqLwdIagQerf 88 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYH---YR-------------ATIGVDFALKVLQWDDKTIVRLQLWDIAGQERF 88 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHH---HH-------------HHHhHHHHHHHhccChHHHHHHHHhcchhhhhh
Confidence 45899999999999999998765421110 00 01111222222333333 3469999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHH-H--Hc--C--CCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLA-R--QV--G--VPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~-~--~~--~--ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
...+.-+.+.+.++.+|+|.+... +..+....+-+ . .+ | +|.+. ..||||...+. . ..-...+.++.++
T Consensus 89 g~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vl-lankCd~e~~a-~-~~~~~~~d~f~ke 165 (229)
T KOG4423|consen 89 GNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVL-LANKCDQEKSA-K-NEATRQFDNFKKE 165 (229)
T ss_pred cceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchhee-ccchhccChHh-h-hhhHHHHHHHHhc
Confidence 888877888999999999998733 22222222111 1 11 3 44333 45999987652 1 1222357788888
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
.++ .-++.+|++.. .++++..+.+.+
T Consensus 166 ngf----~gwtets~Ken----------kni~Ea~r~lVe 191 (229)
T KOG4423|consen 166 NGF----EGWTETSAKEN----------KNIPEAQRELVE 191 (229)
T ss_pred cCc----cceeeeccccc----------cChhHHHHHHHH
Confidence 888 45899999986 356665555544
No 415
>KOG0082|consensus
Probab=97.90 E-value=0.00015 Score=68.12 Aligned_cols=84 Identities=21% Similarity=0.329 Sum_probs=60.2
Q ss_pred hcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCC--------hhHHHHHHHHHHc---
Q psy15217 58 ARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM--------PQTREHILLARQV--- 126 (396)
Q Consensus 58 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~--------~qt~e~l~~~~~~--- 126 (396)
.|-.|..+....|...+..+.++|.+|+..-.+.++...-.++++++|++-++-.+ ..-.|.+.+....
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~ 257 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNN 257 (354)
T ss_pred hccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcC
Confidence 34455556667788888899999999999999999999999999999998876221 1112233333221
Q ss_pred ----CCCeEEEEEeccCCCC
Q psy15217 127 ----GVPYIVVFLNKADMVD 142 (396)
Q Consensus 127 ----~ip~iIvviNK~D~~~ 142 (396)
+.+ +|+++||.|+..
T Consensus 258 ~~F~~ts-iiLFLNK~DLFe 276 (354)
T KOG0082|consen 258 KWFANTS-IILFLNKKDLFE 276 (354)
T ss_pred cccccCc-EEEEeecHHHHH
Confidence 445 677899999853
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.88 E-value=0.00012 Score=71.31 Aligned_cols=126 Identities=19% Similarity=0.173 Sum_probs=68.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhh-hhcCCccccccccCCChh---------HhhcCceEEeeee------------
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLS-KKFGGEAKSYDQIDAAPE---------EKARGITINTAHI------------ 68 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~-~~~~~~~~~~~~~d~~~~---------e~~~g~t~~~~~~------------ 68 (396)
++..+.++|+.|+||||++..|..... ..+..... ...|.... ....|+.......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~l--V~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLL--VACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEE--EeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 457899999999999999999876643 22221111 01222111 0112222211100
Q ss_pred -EEeeCCeeEEEEecCChh----hhHHHHHh--hhhcCCEEEEEEecCCCCChhHHHHHHHHH-HcCCCeEEEEEeccCC
Q psy15217 69 -EYETKARHYAHVDCPGHA----DYIKNMIT--GAAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKADM 140 (396)
Q Consensus 69 -~~~~~~~~~~iiDtpG~~----~~~~~~~~--~~~~~d~~llVvda~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~D~ 140 (396)
.....++.+.|+||||.. ..+..+.. ....+|.++||+|+..+ ....+++.... ..++-.+| +||+|.
T Consensus 176 ~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~giI--lTKlD~ 251 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGLTGVV--LTKLDG 251 (428)
T ss_pred HHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCCCEEE--EeCccC
Confidence 011235678999999943 23332221 23358899999999764 23333333332 45666443 699996
Q ss_pred CC
Q psy15217 141 VD 142 (396)
Q Consensus 141 ~~ 142 (396)
..
T Consensus 252 ~~ 253 (428)
T TIGR00959 252 DA 253 (428)
T ss_pred cc
Confidence 54
No 417
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.87 E-value=0.00014 Score=62.47 Aligned_cols=122 Identities=22% Similarity=0.197 Sum_probs=70.1
Q ss_pred EEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhc--CceEEeeeeEEeeCCeeEEEEecCChhhhHHHHHh
Q psy15217 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKAR--GITINTAHIEYETKARHYAHVDCPGHADYIKNMIT 94 (396)
Q Consensus 17 i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~--g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~ 94 (396)
.-+..|+||||+.-.|.......+...... -+|........ +..........+.-...+.++|||+.... .+..
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllv--D~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~--~~~~ 80 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLI--DADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER--GFIT 80 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEE--eCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH--HHHH
Confidence 345778999999999987665544221100 01111000000 00000000000011117999999985433 3445
Q ss_pred hhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCC
Q psy15217 95 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (396)
Q Consensus 95 ~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~ 142 (396)
.+..+|.+++++++.......+...+..+...+.+.+.+++|++|...
T Consensus 81 ~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 81 AIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred HHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 567899999999998766666666666666677776667789998654
No 418
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.84 E-value=2.7e-05 Score=73.49 Aligned_cols=57 Identities=28% Similarity=0.367 Sum_probs=41.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG 84 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG 84 (396)
+...++.++|-+++|||||||+|.+......+ ...|+|........+. .+.++||||
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s---------------~~PG~Tk~~q~i~~~~---~i~LlDtPG 186 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTS---------------NRPGTTKGIQWIKLDD---GIYLLDTPG 186 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeC---------------CCCceecceEEEEcCC---CeEEecCCC
Confidence 34588999999999999999999976442211 1227777766655543 389999999
No 419
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=6.7e-05 Score=72.19 Aligned_cols=127 Identities=18% Similarity=0.111 Sum_probs=69.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhh-hhcCCccccccccCCChh---H------hhcCceEEeee------eEEeeCCe
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLS-KKFGGEAKSYDQIDAAPE---E------KARGITINTAH------IEYETKAR 75 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~-~~~~~~~~~~~~~d~~~~---e------~~~g~t~~~~~------~~~~~~~~ 75 (396)
...++++|..|+||||++..|..... ..+.... ....|.... + ...|+...... ..+...+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~--Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~ 300 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVS--LYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGS 300 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEE--EecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCC
Confidence 45688999999999999999986432 2211110 001122110 0 11122221110 00112466
Q ss_pred eEEEEecCChhh----hHHHHHhhhh-----cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 76 HYAHVDCPGHAD----YIKNMITGAA-----QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 76 ~~~iiDtpG~~~----~~~~~~~~~~-----~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
.+.+|||||... .+..+...+. ...-.+||+||+.+.. +..+.+.....+++..+| +||+|....
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~~~~glI--lTKLDEt~~ 374 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESLNYRRIL--LTKLDEADF 374 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCCCCCEEE--EEcccCCCC
Confidence 889999999532 2333322222 2446899999987542 334444455667888665 599998654
No 420
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.82 E-value=5.4e-05 Score=71.84 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=53.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhh-hhcCCccccccccCCChhHhhcCceEEeee--eEE---------------eeCC
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLS-KKFGGEAKSYDQIDAAPEEKARGITINTAH--IEY---------------ETKA 74 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~-~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~--~~~---------------~~~~ 74 (396)
++++++|.+++|||||++.|+.... ......+ .|++... ..+ ....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypf----------------tTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~ 66 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPF----------------TTIEPNAGVVNPSDPRLDLLAIYIKPEKVPP 66 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCC----------------CCCCCceeEEEechhHHHHHHHHhCCcCcCC
Confidence 7899999999999999999997653 2211111 1111111 111 1122
Q ss_pred eeEEEEecCChhh-------hHHHHHhhhhcCCEEEEEEecCC
Q psy15217 75 RHYAHVDCPGHAD-------YIKNMITGAAQMDGAILVCSAAD 110 (396)
Q Consensus 75 ~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~llVvda~~ 110 (396)
..+.++|.||-.+ .....+..++.+|+++.||++.+
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 3578999999322 34456666788999999999964
No 421
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00023 Score=68.55 Aligned_cols=129 Identities=17% Similarity=0.102 Sum_probs=71.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhc--CCccccccccCCCh---hH------hhcCceEEeeeeE-------EeeC
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKF--GGEAKSYDQIDAAP---EE------KARGITINTAHIE-------YETK 73 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~--~~~~~~~~~~d~~~---~e------~~~g~t~~~~~~~-------~~~~ 73 (396)
+..|+++|+.|+||||.+..|........ .+........|... .| ..-|+.+...... -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 45899999999999999999976543221 11111111122211 00 0013322221110 0224
Q ss_pred CeeEEEEecCChhh----hHHHHHhhhh--cCC-EEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 74 ARHYAHVDCPGHAD----YIKNMITGAA--QMD-GAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 74 ~~~~~iiDtpG~~~----~~~~~~~~~~--~~d-~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
++.+.++||||... .+..+...+. ..+ -.+||+||+.+... ..+.+.....+++..+| +||.|....
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~-~~~~~~~~~~~~~~~~I--~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD-VKEIFHQFSPFSYKTVI--FTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH-HHHHHHHhcCCCCCEEE--EEeccCCCc
Confidence 67899999999432 2233333333 223 68999999986433 23444555556777665 599998754
No 422
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.82 E-value=0.00025 Score=54.12 Aligned_cols=65 Identities=18% Similarity=0.351 Sum_probs=48.1
Q ss_pred EEEEEEEeeCCC-ceEEEEEEEeeEEecCCEEEEeecC-------CceeEEEEEEEec----ceeeCeeecCCeEEE
Q psy15217 215 LPVEDVFSISGR-GTVVTGRVERGIVRVGEELEIIGIK-------DTVKTTCTGVEMF----RKLLDQGQAGDNIGL 279 (396)
Q Consensus 215 ~~i~~~~~~~~~-G~v~~g~v~~G~l~~g~~v~~~p~~-------~~~~~~v~si~~~----~~~~~~a~~G~~v~l 279 (396)
+.|.++...+.. +.+..+||.+|+|+.||.|++...+ ...+.+|..|... ..++++|.|||+|++
T Consensus 3 a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v 79 (94)
T cd04090 3 VHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLI 79 (94)
T ss_pred EEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEE
Confidence 456666666666 6689999999999999999875211 1123566666654 468999999999988
No 423
>PRK12289 GTPase RsgA; Reviewed
Probab=97.81 E-value=2.2e-05 Score=74.66 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=39.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
.++|+|.+|+|||||+|+|+.......+... ....+.+.+|.....+.+... ..++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs--------~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVS--------GKLGRGRHTTRHVELFELPNG---GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccccccccc--------CCCCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence 3799999999999999999864322211100 011123346666544444322 279999997554
No 424
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.81 E-value=0.0011 Score=67.47 Aligned_cols=183 Identities=17% Similarity=0.235 Sum_probs=122.0
Q ss_pred EecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q psy15217 80 VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (396)
Q Consensus 80 iDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~ 159 (396)
-|+-|.-+-+.+.+..+...+.-+=|+.+.-|...+ ..+.++...+ -+|++-|= .+++ +.++..+
T Consensus 392 ad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG~i~~--~Dv~~a~~~~--a~i~~Fnv--~~~~---------~~~~~a~ 456 (587)
T TIGR00487 392 ADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVGGITE--TDISLASASN--AIIIGFNV--RPDA---------TAKNVAE 456 (587)
T ss_pred eCCcchHHHHHHHHHhhcccCCeEEEEEeecCCCch--hhHHHHHhcC--CEEEEEec--CCCH---------HHHHHHH
Confidence 488887777777777777777777888777655433 3334444443 24445442 1122 2233333
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEE
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIV 239 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l 239 (396)
+.+ ++++.-+-... -++++-+++...+++ .....---.+.|..+|+.+..|.++..+|..|++
T Consensus 457 ~~~-----v~i~~~~iIY~-----------l~d~~~~~~~~~~~~-~~~~~~~g~a~v~~vf~~~~~~~iaG~~V~~G~i 519 (587)
T TIGR00487 457 AEN-----VDIRYYSVIYK-----------LIDEIRAAMKGMLDP-EYEEEIIGQAEVRQVFNVPKIGNIAGCYVTEGVI 519 (587)
T ss_pred HcC-----CeEEEeChHHH-----------HHHHHHHHHHhccCc-ceeeEeeeeEEEEEEEecCCCCEEEEEEEecCEE
Confidence 333 45665544331 244555555554443 2222223346678999998889999999999999
Q ss_pred ecCCEEEEeecCCc-eeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEe
Q psy15217 240 RVGEELEIIGIKDT-VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296 (396)
Q Consensus 240 ~~g~~v~~~p~~~~-~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 296 (396)
+.|..+.+...+.. ...++.|+++++++++++..|+-|++.+.+. .+++.||+|-
T Consensus 520 ~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~ 575 (587)
T TIGR00487 520 KRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNY--NDIKEGDIIE 575 (587)
T ss_pred ecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEecc--ccCCCCCEEE
Confidence 99999998853321 3467899999999999999999999999864 7899999985
No 425
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.80 E-value=0.00013 Score=69.44 Aligned_cols=130 Identities=18% Similarity=0.134 Sum_probs=72.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCCh---hHh--hc----CceEEeeeeE-------EeeCC
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---EEK--AR----GITINTAHIE-------YETKA 74 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~e~--~~----g~t~~~~~~~-------~~~~~ 74 (396)
+.-.|+++|+.|+||||.+..|.....-..+.....-.-+|.+. +|+ .+ |+++...... .....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 46789999999999999999887554411111100000122221 111 11 2333322110 12346
Q ss_pred eeEEEEecCChhhh----HHHHHhhhh--cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 75 RHYAHVDCPGHADY----IKNMITGAA--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 75 ~~~~iiDtpG~~~~----~~~~~~~~~--~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
+.+.|+||.|+..+ +..+...+. ...-..||++|+... ..-++.+.....+++..+| +||+|....
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~-~dlkei~~~f~~~~i~~~I--~TKlDET~s 353 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY-EDLKEIIKQFSLFPIDGLI--FTKLDETTS 353 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch-HHHHHHHHHhccCCcceeE--EEcccccCc
Confidence 78999999996554 333333333 345567788887522 2234555566667888776 499998764
No 426
>PRK00098 GTPase RsgA; Reviewed
Probab=97.79 E-value=0.00015 Score=67.80 Aligned_cols=83 Identities=30% Similarity=0.385 Sum_probs=55.1
Q ss_pred hhcCCEEEEEEecCCCCC-h-hHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEe
Q psy15217 96 AAQMDGAILVCSAADGPM-P-QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 173 (396)
Q Consensus 96 ~~~~d~~llVvda~~g~~-~-qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~ 173 (396)
+..+|.+++|+|+.+... . ...+.+..+...++|.++ ++||+|+.+..+. .. +....++..+ .+++++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iI-VlNK~DL~~~~~~---~~-~~~~~~~~~g-----~~v~~v 147 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPII-VLNKIDLLDDLEE---AR-ELLALYRAIG-----YDVLEL 147 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE-EEEhHHcCCCHHH---HH-HHHHHHHHCC-----CeEEEE
Confidence 578999999999976432 2 224455556677899665 6799999743221 11 2333344444 479999
Q ss_pred cccccccCCCCCCCCCcHHHHHHHh
Q psy15217 174 SAKLALEGDTGPLGEQSILSLSKAL 198 (396)
Q Consensus 174 Sa~~g~~~~~~~~~~~~~~~Ll~~l 198 (396)
||.++ .++++|++.+
T Consensus 148 SA~~g----------~gi~~L~~~l 162 (298)
T PRK00098 148 SAKEG----------EGLDELKPLL 162 (298)
T ss_pred eCCCC----------ccHHHHHhhc
Confidence 99987 5788887765
No 427
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.79 E-value=0.0017 Score=68.12 Aligned_cols=183 Identities=16% Similarity=0.231 Sum_probs=123.2
Q ss_pred EecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q psy15217 80 VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (396)
Q Consensus 80 iDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~ 159 (396)
-|+-|.-+-+...+..+..-+.-+=|+.+.-|....+- +.++...+ -+|+..|= .++. .++...+
T Consensus 594 ad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG~it~~D--v~la~~~~--a~ii~Fnv--~~~~---------~~~~~a~ 658 (787)
T PRK05306 594 ADVQGSVEALKDSLEKLSTDEVKVNIIHSGVGAITESD--VTLAAASN--AIIIGFNV--RPDA---------KARKLAE 658 (787)
T ss_pred eCCcchHHHHHHHHHhhcccCCceEEEeeccCCCCHHH--HHHHHhcC--CEEEEEcC--CCCH---------HHHHHHH
Confidence 48888777777777777777777888877766544333 33343333 24444442 1121 2233333
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEE
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIV 239 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l 239 (396)
.. .+.+...+-... -++++-+++...+++ .....---.+.|..+|+++..|.++..+|..|.+
T Consensus 659 ~~-----~v~i~~~~iIY~-----------l~d~~~~~~~~~l~~-~~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~i 721 (787)
T PRK05306 659 QE-----GVDIRYYSIIYD-----------LIDDVKAAMSGMLEP-EYEEEIIGQAEVREVFKVSKVGTIAGCMVTEGKI 721 (787)
T ss_pred Hc-----CCEEEEeChHHH-----------HHHHHHHHHhhccCc-hhheeeeeeEEEEEEEecCCCCeEEEEEEeeCEE
Confidence 33 345666554431 345555556554543 2222223346788999999889999999999999
Q ss_pred ecCCEEEEeecCCc-eeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEe
Q psy15217 240 RVGEELEIIGIKDT-VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296 (396)
Q Consensus 240 ~~g~~v~~~p~~~~-~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 296 (396)
+.|..+.+.-.+.. ...++.|++++++++.++..|+-|++.+.+. .+++.||+|-
T Consensus 722 ~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~--~d~~~gD~ie 777 (787)
T PRK05306 722 KRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENY--NDIKEGDIIE 777 (787)
T ss_pred ecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeecc--ccCCCCCEEE
Confidence 99999999853221 3568999999999999999999999999854 6899999985
No 428
>KOG3887|consensus
Probab=97.77 E-value=7.8e-05 Score=65.20 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=91.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 92 (396)
.+|.++|+--+|||++.....+....+ +.+-.|....+|.+. +...--++.+||-||+-+|..-.
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPn-----------eTlflESTski~~d~----is~sfinf~v~dfPGQ~~~Fd~s 92 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPN-----------ETLFLESTSKITRDH----ISNSFINFQVWDFPGQMDFFDPS 92 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCC-----------ceeEeeccCcccHhh----hhhhhcceEEeecCCccccCCCc
Confidence 459999999999999998876543211 111111111122111 11112346789999987765432
Q ss_pred Hh---hhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHcCCC---eEEEEEeccCCCCHHH---HHHHHHHHHHHHHhhcC
Q psy15217 93 IT---GAAQMDGAILVCSAADGP-MPQTREHILLARQVGVP---YIVVFLNKADMVDDEE---LLELVEIEIRELLNKYE 162 (396)
Q Consensus 93 ~~---~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~~ip---~iIvviNK~D~~~~~~---~~~~i~~~~~~~l~~~~ 162 (396)
.. -.+.+.+.++|+||.+.. .+-++.|+..+++..+. .+=|.+-|.|-...+. ....+.....+-+...+
T Consensus 93 ~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~g 172 (347)
T KOG3887|consen 93 FDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAG 172 (347)
T ss_pred cCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhh
Confidence 22 245788999999998754 35678888888887433 2445689999776532 22233334455566666
Q ss_pred CCCCCCeEEEeccccc
Q psy15217 163 FPGNDIPIIKGSAKLA 178 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g 178 (396)
+..-.+.+..+|....
T Consensus 173 le~v~vsf~LTSIyDH 188 (347)
T KOG3887|consen 173 LEKVQVSFYLTSIYDH 188 (347)
T ss_pred hccceEEEEEeeecch
Confidence 6444556777777653
No 429
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.77 E-value=0.00018 Score=70.44 Aligned_cols=127 Identities=17% Similarity=0.115 Sum_probs=67.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhh-hhcCCccccccccCCChh---H------hhcCceEEeeeeE-------EeeCCe
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLS-KKFGGEAKSYDQIDAAPE---E------KARGITINTAHIE-------YETKAR 75 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~-~~~~~~~~~~~~~d~~~~---e------~~~g~t~~~~~~~-------~~~~~~ 75 (396)
-.++++|+.|+||||++..|..... ..++... .....|.... | +..++........ -....+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V-~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKV-ALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeE-EEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 4789999999999999999876554 2221111 1111233210 0 1122222211100 012356
Q ss_pred eEEEEecCChhhh----HHHHHhhhh---cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 76 HYAHVDCPGHADY----IKNMITGAA---QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 76 ~~~iiDtpG~~~~----~~~~~~~~~---~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
.+.||||||.... +..+...+. ..+-..||++++.+. ....+.+......++..+ ++||+|....
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~~~v--I~TKlDet~~ 372 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPLDGL--IFTKLDETSS 372 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCCCEE--EEeccccccc
Confidence 8999999996333 222222222 345778999997633 222333344445565544 3699998653
No 430
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.76 E-value=5.7e-05 Score=63.49 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
...+++++|.+++|||||+++|.+.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~ 124 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGR 124 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999999853
No 431
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=97.75 E-value=0.00059 Score=50.65 Aligned_cols=78 Identities=26% Similarity=0.356 Sum_probs=54.4
Q ss_pred eEEEEEEEEeecCCCC-----CCcccccCceeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEE
Q psy15217 305 KHFTGEIYALSKDEGG-----RHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAI 379 (396)
Q Consensus 305 ~~f~a~v~~l~~~~~~-----~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~l 379 (396)
++++.+...|+..-+. +-.+|.+|-..++.+|+....|++.... +| .+++.|.+|+|.+.|+|.++
T Consensus 2 ~~l~i~~~Ll~r~vg~~~~~~kv~~i~~~E~LmlnIGsatt~G~V~~~k-------~d--~~~v~L~~Pvc~~~g~rvai 72 (88)
T PF09173_consen 2 TELEIEYHLLERVVGVKEKEAKVEPIKKGEVLMLNIGSATTGGVVTSVK-------KD--MAEVELKKPVCAEKGERVAI 72 (88)
T ss_dssp EEEEEEEEE-SSCSSSSS-CCS-----TTEEEEEEETTEEEEEEEEEEE-------TT--EEEEEEEEEEE-STTSEEEE
T ss_pred EEEEEEEEEehhhhCccccceecccCCCCCEEEEEEccccccEEEEEEE-------CC--EEEEEecCCeEcCcCCeeee
Confidence 4566777777764321 2368999999999999999999996433 33 46889999999999999988
Q ss_pred -Ee-C--CcEEEEEEE
Q psy15217 380 -RE-G--GRTVGAGVV 391 (396)
Q Consensus 380 -r~-~--~~t~~~G~i 391 (396)
|. + .|.+|+|.|
T Consensus 73 SRri~~rWRLIG~G~I 88 (88)
T PF09173_consen 73 SRRIGNRWRLIGWGII 88 (88)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred ehhccCeEEEEEEEeC
Confidence 42 3 489999986
No 432
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.74 E-value=0.00019 Score=70.75 Aligned_cols=128 Identities=20% Similarity=0.174 Sum_probs=67.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCC--------hh-HhhcCceEEeeee-------EEeeCCee
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAA--------PE-EKARGITINTAHI-------EYETKARH 76 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~--------~~-e~~~g~t~~~~~~-------~~~~~~~~ 76 (396)
-.++++|..|+||||++..|........+.........|.. .. -...|+....... ..+..++.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 47899999999999999999876532221100001112221 00 1222333221111 12334567
Q ss_pred EEEEecCChhhhH---HHHHhh---hhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 77 YAHVDCPGHADYI---KNMITG---AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 77 ~~iiDtpG~~~~~---~~~~~~---~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
+.++||+|..... ...... .....-.+||+|+..+. ....+.+......++..+| +||+|....
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~-~~l~~i~~~f~~~~~~g~I--lTKlDet~~ 406 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG-DTLNEVVQAYRGPGLAGCI--LTKLDEAAS 406 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-HHHHHHHHHhccCCCCEEE--EeCCCCccc
Confidence 8999999933221 111111 11234478999998643 2223333444445666554 599997653
No 433
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.73 E-value=4e-05 Score=71.25 Aligned_cols=65 Identities=20% Similarity=0.232 Sum_probs=41.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
..++++|++|+|||||++.|++......+... ....+.+++|.....+.+... ..++||||..+|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~--------~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEIS--------EKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcccccee--------ccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 57999999999999999999875433221110 011123345665554444322 368999998664
No 434
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.72 E-value=0.0023 Score=66.52 Aligned_cols=182 Identities=15% Similarity=0.188 Sum_probs=121.8
Q ss_pred EecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q psy15217 80 VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (396)
Q Consensus 80 iDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~ 159 (396)
-|+-|.-+-+...+..+....+-+=|+.+.-|....+ -+.++...+ .+|++.|= .++. .++...+
T Consensus 549 ad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG~it~~--Dv~lA~~~~--a~ii~Fnv--~~~~---------~~~~~a~ 613 (742)
T CHL00189 549 TDTQGSIEAIINSISQIPQKKVQLNILYASLGEVTET--DVEFASTTN--AEILAFNT--NLAP---------GAKKAAR 613 (742)
T ss_pred eCCcchHHHHHHHHHhcCCCcEEEEEEEeecCCCCHH--HHHHHHhcC--CEEEEeeC--CCCH---------HHHHHHH
Confidence 4888888888888877776677777887776654333 234444444 24444442 1121 1223333
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEE
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIV 239 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l 239 (396)
..+ +.+...+-... -++++-+++...++ |.......-++.|..+|.++. |.++..+|.+|.+
T Consensus 614 ~~~-----v~i~~~~iIY~-----------lid~~~~~~~~~l~-~~~~~~~~g~a~v~~vF~~~k-~~iaGc~V~~G~i 675 (742)
T CHL00189 614 KLN-----IIIKEYQVIYD-----------LLEYIEALMEDLLD-PEYKKVPIGEAEVKTVFPLAK-RFVAGCRVTEGKI 675 (742)
T ss_pred HcC-----CEEEEeChHHH-----------HHHHHHHHHhhccC-ceeeeeeceeEEeeEEEecCC-CEEEEEEEecCEE
Confidence 333 45655544331 24455555555444 333233344677899999886 8999999999999
Q ss_pred ecCCEEEEeecCCc-eeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEe
Q psy15217 240 RVGEELEIIGIKDT-VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296 (396)
Q Consensus 240 ~~g~~v~~~p~~~~-~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 296 (396)
+.|..+++...+.. ...++.|++++++++.++..|+-||+.+.+ ..+++.||+|-
T Consensus 676 ~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~--~~d~~~gD~ie 731 (742)
T CHL00189 676 TKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEE--FQLWQSGDKIH 731 (742)
T ss_pred ecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeC--CCCCCcCCEEE
Confidence 99999999854332 356789999999999999999999999984 46899999985
No 435
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.71 E-value=0.00024 Score=66.09 Aligned_cols=82 Identities=26% Similarity=0.261 Sum_probs=55.1
Q ss_pred hhcCCEEEEEEecCCCC-C-hhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEe
Q psy15217 96 AAQMDGAILVCSAADGP-M-PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 173 (396)
Q Consensus 96 ~~~~d~~llVvda~~g~-~-~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~ 173 (396)
+..+|.+++|+|+.+.. . .....++..+...++|.++ ++||+|+.+..+.. .........+ .+++++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iI-VlNK~DL~~~~~~~-----~~~~~~~~~g-----~~v~~v 144 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVI-VLTKADLLDDEEEE-----LELVEALALG-----YPVLAV 144 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEE-EEEHHHCCChHHHH-----HHHHHHHhCC-----CeEEEE
Confidence 56899999999998764 2 3334456666777888555 68999998652211 1112222232 579999
Q ss_pred cccccccCCCCCCCCCcHHHHHHHh
Q psy15217 174 SAKLALEGDTGPLGEQSILSLSKAL 198 (396)
Q Consensus 174 Sa~~g~~~~~~~~~~~~~~~Ll~~l 198 (396)
||+++ .++++|.+.+
T Consensus 145 SA~~g----------~gi~~L~~~L 159 (287)
T cd01854 145 SAKTG----------EGLDELREYL 159 (287)
T ss_pred ECCCC----------ccHHHHHhhh
Confidence 99997 4777777765
No 436
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.71 E-value=0.00037 Score=65.43 Aligned_cols=151 Identities=24% Similarity=0.192 Sum_probs=79.3
Q ss_pred EEEEeCCCCChHHHHHHHHhhhhhhcCCcccc-----ccccCC-ChhHhhcCceEEeee--eEEe---------------
Q psy15217 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKS-----YDQIDA-APEEKARGITINTAH--IEYE--------------- 71 (396)
Q Consensus 15 i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~-----~~~~d~-~~~e~~~g~t~~~~~--~~~~--------------- 71 (396)
.++.|--|||||||+++|+.... +..-+.. -...|. .-.+....-..+.+. .++.
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 46789999999999999987543 1111000 001221 101101001111111 1111
Q ss_pred eCCeeEEEEecCChhhhHHHHH--------hhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 72 TKARHYAHVDCPGHADYIKNMI--------TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 72 ~~~~~~~iiDtpG~~~~~~~~~--------~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
.+...+.+|.|-|-..=.+... ......|.++-||||.+.........-....++....+| ++||.|++++
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~i-vlNK~Dlv~~ 160 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVI-VLNKTDLVDA 160 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEE-EEecccCCCH
Confidence 2335678999999433222211 122346889999999885443321111222333444566 4799999997
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCeEEEeccc
Q psy15217 144 EELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 176 (396)
Q Consensus 144 ~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~ 176 (396)
++ .+ .++..+.+++- ..+++..|..
T Consensus 161 ~~-l~----~l~~~l~~lnp---~A~i~~~~~~ 185 (323)
T COG0523 161 EE-LE----ALEARLRKLNP---RARIIETSYG 185 (323)
T ss_pred HH-HH----HHHHHHHHhCC---CCeEEEcccc
Confidence 53 33 34455555443 4678888773
No 437
>KOG1487|consensus
Probab=97.71 E-value=0.0001 Score=65.14 Aligned_cols=84 Identities=23% Similarity=0.181 Sum_probs=58.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh----
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY---- 88 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~---- 88 (396)
-++.++|.+.+|||||+..|++...+...+. +.|.........+++-.+.+.|.||.-+-
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasye----------------fttl~~vpG~~~y~gaKiqlldlpgiiegakdg 123 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYE----------------FTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDG 123 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCcccccc----------------ceeEEEecceEeccccceeeecCcchhcccccC
Confidence 4899999999999999999987543321111 33444444445567778999999994322
Q ss_pred ---HHHHHhhhhcCCEEEEEEecCCCC
Q psy15217 89 ---IKNMITGAAQMDGAILVCSAADGP 112 (396)
Q Consensus 89 ---~~~~~~~~~~~d~~llVvda~~g~ 112 (396)
-++.+..++.|+.+++|.|+...+
T Consensus 124 kgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 124 KGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred CCCccEEEEEeecccEEEEEeeccCcc
Confidence 234555567889999999987543
No 438
>KOG1491|consensus
Probab=97.69 E-value=0.0001 Score=67.70 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=56.4
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEe--------------eCC
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE--------------TKA 74 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~--------------~~~ 74 (396)
...+++++|+|-+++|||||+++|+...... +.+. -.||+......+ ..+
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~--~NfP--------------F~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~ 80 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGA--ANFP--------------FCTIDPNEARVEVPDSRFDLLCPIYGPKS 80 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCc--cCCC--------------cceeccccceeecCchHHHHHHHhcCCcc
Confidence 3457899999999999999999999753321 1111 123333222111 111
Q ss_pred ---eeEEEEecCCh-------hhhHHHHHhhhhcCCEEEEEEecCC
Q psy15217 75 ---RHYAHVDCPGH-------ADYIKNMITGAAQMDGAILVCSAAD 110 (396)
Q Consensus 75 ---~~~~iiDtpG~-------~~~~~~~~~~~~~~d~~llVvda~~ 110 (396)
-.++++|++|- +-.-...++-++.+|+++-||++..
T Consensus 81 ~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 81 KVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 24789999992 2334556677788999999999875
No 439
>PRK13796 GTPase YqeH; Provisional
Probab=97.68 E-value=4.9e-05 Score=73.07 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=40.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~ 85 (396)
..++.++|.+|+|||||+|+|+....... +........|+|.+.....+.. ...++||||.
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~----------~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEK----------DVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCcc----------ceEEecCCCCccceeEEEEcCC---CcEEEECCCc
Confidence 35799999999999999999986431110 0011123457888776555432 2489999995
No 440
>KOG0447|consensus
Probab=97.67 E-value=0.0015 Score=63.56 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=75.3
Q ss_pred ccCCCCeeEEEEEeCCCCChHHHHHHHHhhhh-hhcCC------------------------ccccccccCCCh------
Q psy15217 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLS-KKFGG------------------------EAKSYDQIDAAP------ 54 (396)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~-~~~~~------------------------~~~~~~~~d~~~------ 54 (396)
|.......+|+++|...+|||+.+..+.+... .+|.+ +.+. .|..+
T Consensus 302 Ynt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsRE---fDLTKE~DLq~ 378 (980)
T KOG0447|consen 302 YNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSRE---FDLTKEEDLAA 378 (980)
T ss_pred ccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhcccccc---ccccchhHHHH
Confidence 44455667999999999999999998864321 11111 1111 11111
Q ss_pred --hH--------hhcCceEEeeeeEEeeCC---eeEEEEecCCh-------------hhhHHHHHhhhhcCCEEEEEEe-
Q psy15217 55 --EE--------KARGITINTAHIEYETKA---RHYAHVDCPGH-------------ADYIKNMITGAAQMDGAILVCS- 107 (396)
Q Consensus 55 --~e--------~~~g~t~~~~~~~~~~~~---~~~~iiDtpG~-------------~~~~~~~~~~~~~~d~~llVvd- 107 (396)
+| ...|.|++.....+...+ ....++|.||. +........++..++++||||-
T Consensus 379 LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD 458 (980)
T KOG0447|consen 379 LRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD 458 (980)
T ss_pred HHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc
Confidence 11 223666665544444333 35789999993 2334444556678999999973
Q ss_pred cCCC-CChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 108 AADG-PMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 108 a~~g-~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
.+-. .....-.....+.-.|...| +|++|.|+...
T Consensus 459 GSVDAERSnVTDLVsq~DP~GrRTI-fVLTKVDlAEk 494 (980)
T KOG0447|consen 459 GSVDAERSIVTDLVSQMDPHGRRTI-FVLTKVDLAEK 494 (980)
T ss_pred CCcchhhhhHHHHHHhcCCCCCeeE-EEEeecchhhh
Confidence 2211 11111222233334576655 46899998653
No 441
>KOG2485|consensus
Probab=97.66 E-value=0.00012 Score=66.56 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=46.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG 84 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG 84 (396)
+.+.++.++|-+|.|||||++++......+. +.++. -.+.|+|..++...--.....+.++||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~-k~a~v---------G~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKK-KAARV---------GAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhc-cceec---------cCCCCceeeehhheEeccCCceEEecCCC
Confidence 4678999999999999999999976655443 21111 11448998887543333556688999999
No 442
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.66 E-value=6.2e-05 Score=72.27 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=39.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~ 86 (396)
.++.++|.+|+|||||+|+|++....... ........|.|.+.....+ +..+.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~----------~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKD----------VITTSPFPGTTLDLIEIPL---DDGHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcc----------eeeecCCCCeEeeEEEEEe---CCCCEEEECCCCC
Confidence 58999999999999999999975321100 0011123477777654433 2336799999943
No 443
>PRK13796 GTPase YqeH; Provisional
Probab=97.64 E-value=0.00044 Score=66.52 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=60.4
Q ss_pred hhHHHHHhhhhcCC-EEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 87 DYIKNMITGAAQMD-GAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 87 ~~~~~~~~~~~~~d-~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
+|. .++..+...| .+++|||+.+.... ....+.... -+.| +++++||+|+.+.+...+.+...+..+.+..++.
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~~~s-~~~~L~~~~-~~kp-viLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~- 132 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDFNGS-WIPGLHRFV-GNNP-VLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLR- 132 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccCCCc-hhHHHHHHh-CCCC-EEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCC-
Confidence 444 4666677666 89999999873322 222222211 2556 5557899999764222233333445555666652
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
..+++.+||+++ .++.+|++.+.+.
T Consensus 133 -~~~v~~vSAk~g----------~gI~eL~~~I~~~ 157 (365)
T PRK13796 133 -PVDVVLISAQKG----------HGIDELLEAIEKY 157 (365)
T ss_pred -cCcEEEEECCCC----------CCHHHHHHHHHHh
Confidence 235899999987 4788888887654
No 444
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.63 E-value=0.0008 Score=55.38 Aligned_cols=105 Identities=21% Similarity=0.174 Sum_probs=62.6
Q ss_pred EEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHHhhh
Q psy15217 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGA 96 (396)
Q Consensus 17 i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~ 96 (396)
.-+..|+||||+.-.|.......+.... .+|... .+..+ .+.+.++|+|+... ......+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~----~vd~D~----~~~~~----------~yd~VIiD~p~~~~--~~~~~~l 64 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVL----LLDADL----GLANL----------DYDYIIIDTGAGIS--DNVLDFF 64 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEE----EEECCC----CCCCC----------CCCEEEEECCCCCC--HHHHHHH
Confidence 4567789999999888765543321111 111110 01111 16789999998533 3334567
Q ss_pred hcCCEEEEEEecCCCCChhHHHHHHHHHHc-CCCeEEEEEeccCCC
Q psy15217 97 AQMDGAILVCSAADGPMPQTREHILLARQV-GVPYIVVFLNKADMV 141 (396)
Q Consensus 97 ~~~d~~llVvda~~g~~~qt~e~l~~~~~~-~ip~iIvviNK~D~~ 141 (396)
..+|.+++|++++......+...+..+... +.+.+.+++|+++..
T Consensus 65 ~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 65 LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 789999999999864444445555444332 344465678999744
No 445
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.63 E-value=0.00053 Score=53.60 Aligned_cols=96 Identities=23% Similarity=0.217 Sum_probs=62.2
Q ss_pred eCCCCChHHHHHHHHhhhhhh-cCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHHhhhh
Q psy15217 19 GHVDHGKTTLTAAIATVLSKK-FGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAA 97 (396)
Q Consensus 19 G~~~~GKSTLi~~L~~~~~~~-~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~ 97 (396)
+--|+||||+.-.|....... +.... .+|..++ . +..+.++|||+.... .....+.
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~----l~d~d~~----------------~-~~D~IIiDtpp~~~~--~~~~~l~ 63 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVL----LVDLDLQ----------------F-GDDYVVVDLGRSLDE--VSLAALD 63 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEE----EEECCCC----------------C-CCCEEEEeCCCCcCH--HHHHHHH
Confidence 445799999999887655433 21111 1121111 0 117899999996543 3345567
Q ss_pred cCCEEEEEEecCCCCChhHHHHHHHHHHcCCC---eEEEEEec
Q psy15217 98 QMDGAILVCSAADGPMPQTREHILLARQVGVP---YIVVFLNK 137 (396)
Q Consensus 98 ~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip---~iIvviNK 137 (396)
.+|.++++++++......+.+.+..+...+.+ ++.+++|+
T Consensus 64 ~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 64 QADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 89999999999876666677777777776654 56667786
No 446
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00016 Score=74.62 Aligned_cols=126 Identities=19% Similarity=0.197 Sum_probs=64.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCCh---hH------hhcCceEEeeee-------EEeeCCee
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---EE------KARGITINTAHI-------EYETKARH 76 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~e------~~~g~t~~~~~~-------~~~~~~~~ 76 (396)
-.++++|+.|+||||++..|........+.........|... .| ...|+......- .-+..++.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 478999999999999999998765322111000000112111 01 112222211100 00124567
Q ss_pred EEEEecCChh----hhHHHHHh--hhhcCCEEEEEEecCCCCChhHHH-HHHHHHH---cCCCeEEEEEeccCCCC
Q psy15217 77 YAHVDCPGHA----DYIKNMIT--GAAQMDGAILVCSAADGPMPQTRE-HILLARQ---VGVPYIVVFLNKADMVD 142 (396)
Q Consensus 77 ~~iiDtpG~~----~~~~~~~~--~~~~~d~~llVvda~~g~~~qt~e-~l~~~~~---~~ip~iIvviNK~D~~~ 142 (396)
+.||||||.. ........ .....+-.+||+|++.+ .+... .+..... .++..+| +||+|...
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glI--lTKLDEt~ 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCI--ITKLDEAT 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEE--EeccCCCC
Confidence 9999999922 22222111 12346789999999853 22222 2222222 2566554 59999865
No 447
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.58 E-value=0.001 Score=51.61 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=62.0
Q ss_pred EEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecce-----------eeCeeecCCeEEEEecc
Q psy15217 215 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRK-----------LLDQGQAGDNIGLLLRG 283 (396)
Q Consensus 215 ~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~-----------~~~~a~~G~~v~l~l~~ 283 (396)
..|.++-..+|.|+++.--|.+|+|++||.|.++.......++|+++...+. +++++.|..-+-+...+
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g 82 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD 82 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence 4567788889999999999999999999999998665556789999877654 78888877667776555
Q ss_pred cCccCCCCCeEEe
Q psy15217 284 TKREDVERGQVLA 296 (396)
Q Consensus 284 ~~~~~i~~G~vl~ 296 (396)
++ ++..|+-+.
T Consensus 83 L~--~v~aG~~~~ 93 (110)
T cd03703 83 LE--KAIAGSPLL 93 (110)
T ss_pred Cc--cccCCCEEE
Confidence 53 345666553
No 448
>PRK12288 GTPase RsgA; Reviewed
Probab=97.55 E-value=0.00083 Score=63.99 Aligned_cols=87 Identities=21% Similarity=0.317 Sum_probs=57.1
Q ss_pred hhcCCEEEEEEecCCCCC-hhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEec
Q psy15217 96 AAQMDGAILVCSAADGPM-PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 174 (396)
Q Consensus 96 ~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~S 174 (396)
+.++|.+++|.+...... ......+..+...++|.+| ++||+|+.+..+. +.+. +....+...+ .+++++|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VI-VlNK~DL~~~~~~-~~~~-~~~~~y~~~g-----~~v~~vS 189 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLI-VLNKIDLLDDEGR-AFVN-EQLDIYRNIG-----YRVLMVS 189 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEE-EEECccCCCcHHH-HHHH-HHHHHHHhCC-----CeEEEEe
Confidence 467899999988765433 2334455566667899665 6899999875321 1122 2223333333 5799999
Q ss_pred ccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 175 AKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 175 a~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
|.++ .++.+|++.+..
T Consensus 190 A~tg----------~GideL~~~L~~ 205 (347)
T PRK12288 190 SHTG----------EGLEELEAALTG 205 (347)
T ss_pred CCCC----------cCHHHHHHHHhh
Confidence 9997 588899988754
No 449
>PRK01889 GTPase RsgA; Reviewed
Probab=97.52 E-value=0.00069 Score=64.95 Aligned_cols=82 Identities=28% Similarity=0.400 Sum_probs=56.7
Q ss_pred hhcCCEEEEEEecCCCCCh-hHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEec
Q psy15217 96 AAQMDGAILVCSAADGPMP-QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 174 (396)
Q Consensus 96 ~~~~d~~llVvda~~g~~~-qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~S 174 (396)
+.+.|.+++|+++...... .....+..+...+++.+| ++||+|+.+..+ +.. ..+..+ . ...+++++|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piI-VLNK~DL~~~~~--~~~-~~~~~~----~---~g~~Vi~vS 178 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVI-VLTKADLCEDAE--EKI-AEVEAL----A---PGVPVLAVS 178 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEE-EEEChhcCCCHH--HHH-HHHHHh----C---CCCcEEEEE
Confidence 4678999999999866665 445556677888999766 689999986421 111 223222 1 136799999
Q ss_pred ccccccCCCCCCCCCcHHHHHHHh
Q psy15217 175 AKLALEGDTGPLGEQSILSLSKAL 198 (396)
Q Consensus 175 a~~g~~~~~~~~~~~~~~~Ll~~l 198 (396)
+.++ .++.+|.+++
T Consensus 179 a~~g----------~gl~~L~~~L 192 (356)
T PRK01889 179 ALDG----------EGLDVLAAWL 192 (356)
T ss_pred CCCC----------ccHHHHHHHh
Confidence 9987 5777777775
No 450
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.0089 Score=58.66 Aligned_cols=104 Identities=15% Similarity=0.296 Sum_probs=79.8
Q ss_pred cHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCC-ceeEEEEEEEecceee
Q psy15217 190 SILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD-TVKTTCTGVEMFRKLL 268 (396)
Q Consensus 190 ~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~-~~~~~v~si~~~~~~~ 268 (396)
-++++-.++...+.+. ....---..-+..+|.+++.|.++...|..|.++.|..+.+.-.+. -..-+|.|++.+++++
T Consensus 392 lied~~~~~~g~l~p~-~~e~~~g~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv 470 (509)
T COG0532 392 LIEDVEAAMKGMLEPE-KKERVIGLAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDV 470 (509)
T ss_pred HHHHHHHHHHhccchh-hhhhcccceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccH
Confidence 4566666666655432 2222222345678899999999999999999999999999873221 1347899999999999
Q ss_pred CeeecCCeEEEEecccCccCCCCCeEEe
Q psy15217 269 DQGQAGDNIGLLLRGTKREDVERGQVLA 296 (396)
Q Consensus 269 ~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 296 (396)
.++.+|+-|++.+.+ .++++.||+|-
T Consensus 471 ~ev~~G~ecgI~i~~--~~di~~gD~le 496 (509)
T COG0532 471 KEVRKGQECGIAIEN--YRDIKEGDILE 496 (509)
T ss_pred hHhccCcEEEEEecC--cccCCCCCEEE
Confidence 999999999999986 67899999885
No 451
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.45 E-value=0.0012 Score=62.25 Aligned_cols=88 Identities=23% Similarity=0.311 Sum_probs=49.4
Q ss_pred eeEEEEecCChhhhHHHHHh--------hhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHH
Q psy15217 75 RHYAHVDCPGHADYIKNMIT--------GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEEL 146 (396)
Q Consensus 75 ~~~~iiDtpG~~~~~~~~~~--------~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~ 146 (396)
....+|.|.|..+-...... .....|.++.|||+......... +-....+.....+|| +||+|+.+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~-~~~~~~Qi~~AD~Iv-lnK~Dl~~~~-- 166 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ-FTIAQSQVGYADRIL-LTKTDVAGEA-- 166 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccc-cHHHHHHHHhCCEEE-EeccccCCHH--
Confidence 45789999996543222211 12245899999999874322111 111223344455664 7999999852
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCeEEEec
Q psy15217 147 LELVEIEIRELLNKYEFPGNDIPIIKGS 174 (396)
Q Consensus 147 ~~~i~~~~~~~l~~~~~~~~~~~~i~~S 174 (396)
+ .+.+.++.++- ..+++..+
T Consensus 167 -~----~~~~~l~~lnp---~a~i~~~~ 186 (318)
T PRK11537 167 -E----KLRERLARINA---RAPVYTVV 186 (318)
T ss_pred -H----HHHHHHHHhCC---CCEEEEec
Confidence 2 34444554432 46677654
No 452
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.37 E-value=0.00074 Score=57.58 Aligned_cols=67 Identities=22% Similarity=0.366 Sum_probs=51.6
Q ss_pred CCeeEEEEecCChhhhHHHHHhh--hhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 73 KARHYAHVDCPGHADYIKNMITG--AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~--~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
+.+.+.++|||+.-. ...... +..+|.+++|+.+.......+.+.+..+...+.+.+-+++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 467899999999632 222222 2578999999998876677888888999999999877788999853
No 453
>PRK00098 GTPase RsgA; Reviewed
Probab=97.36 E-value=0.0002 Score=66.95 Aligned_cols=24 Identities=33% Similarity=0.282 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
..++++|++|+|||||++.|++..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999998653
No 454
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.35 E-value=0.0022 Score=49.66 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=46.8
Q ss_pred EEEEe-CCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHH
Q psy15217 15 VGTIG-HVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (396)
Q Consensus 15 i~i~G-~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~ 93 (396)
|++.| ..|+||||+.-.|.......+.. ...+|..+. +.+.++|+|+..... ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~----vl~~d~d~~-------------------~d~viiD~p~~~~~~--~~ 56 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKR----VLLIDLDPQ-------------------YDYIIIDTPPSLGLL--TR 56 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCc----EEEEeCCCC-------------------CCEEEEeCcCCCCHH--HH
Confidence 56666 56899999999987665432211 011111111 568999999964332 33
Q ss_pred hhhhcCCEEEEEEecCCCC
Q psy15217 94 TGAAQMDGAILVCSAADGP 112 (396)
Q Consensus 94 ~~~~~~d~~llVvda~~g~ 112 (396)
..+..+|.+++++++....
T Consensus 57 ~~l~~ad~viv~~~~~~~s 75 (104)
T cd02042 57 NALAAADLVLIPVQPSPLD 75 (104)
T ss_pred HHHHHCCEEEEeccCCHHH
Confidence 5567799999999987533
No 455
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.35 E-value=0.0019 Score=48.92 Aligned_cols=71 Identities=23% Similarity=0.280 Sum_probs=48.1
Q ss_pred EEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHH-HH
Q psy15217 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN-MI 93 (396)
Q Consensus 15 i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~-~~ 93 (396)
+++.|..|+||||+...|.....+.+ ... ..++ .+.++|+|+....... ..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g--------------------~~v----~~~~----d~iivD~~~~~~~~~~~~~ 53 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG--------------------KRV----LLID----DYVLIDTPPGLGLLVLLCL 53 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--------------------CeE----EEEC----CEEEEeCCCCccchhhhhh
Confidence 57889999999999999987654421 111 1111 6899999996543321 24
Q ss_pred hhhhcCCEEEEEEecCCCCC
Q psy15217 94 TGAAQMDGAILVCSAADGPM 113 (396)
Q Consensus 94 ~~~~~~d~~llVvda~~g~~ 113 (396)
.....+|.++++++......
T Consensus 54 ~~~~~~~~vi~v~~~~~~~~ 73 (99)
T cd01983 54 LALLAADLVIIVTTPEALAV 73 (99)
T ss_pred hhhhhCCEEEEecCCchhhH
Confidence 45567899999999886433
No 456
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.32 E-value=0.0024 Score=58.66 Aligned_cols=83 Identities=30% Similarity=0.389 Sum_probs=60.6
Q ss_pred cCCEEEEEEecCCCCC--hhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecc
Q psy15217 98 QMDGAILVCSAADGPM--PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 175 (396)
Q Consensus 98 ~~d~~llVvda~~g~~--~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa 175 (396)
..|-+++|+++.+..+ .+....|..+...|+..+|| +||+|+.+.++... ++.......+++ +++.+|+
T Consensus 79 n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIv-lnK~DL~~~~~~~~---~~~~~~y~~~gy-----~v~~~s~ 149 (301)
T COG1162 79 NNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIV-LNKIDLLDDEEAAV---KELLREYEDIGY-----PVLFVSA 149 (301)
T ss_pred ccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEE-EEccccCcchHHHH---HHHHHHHHhCCe-----eEEEecC
Confidence 4788889998887554 45566778888889998875 79999998755432 345566666665 6999999
Q ss_pred cccccCCCCCCCCCcHHHHHHHhh
Q psy15217 176 KLALEGDTGPLGEQSILSLSKALD 199 (396)
Q Consensus 176 ~~g~~~~~~~~~~~~~~~Ll~~l~ 199 (396)
+++ +++.+|.+++.
T Consensus 150 ~~~----------~~~~~l~~~l~ 163 (301)
T COG1162 150 KNG----------DGLEELAELLA 163 (301)
T ss_pred cCc----------ccHHHHHHHhc
Confidence 986 46666666653
No 457
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.31 E-value=0.0064 Score=58.11 Aligned_cols=158 Identities=21% Similarity=0.331 Sum_probs=82.1
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCcc-ccccccCCChhHhhcCceEEeeee----------EEe-eCCe
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEA-KSYDQIDAAPEEKARGITINTAHI----------EYE-TKAR 75 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~----------~~~-~~~~ 75 (396)
+....+=|+++|++-+||||++.++.....-..-... ......|.+|+. ..|.|+-+..- .+. .-..
T Consensus 13 RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS-~aGktImTTEPKFiP~eAv~I~l~~~~~~ 91 (492)
T PF09547_consen 13 RTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQS-GAGKTIMTTEPKFIPNEAVEITLDDGIKV 91 (492)
T ss_pred hcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcC-CCCCceeccCCcccCCcceEEEecCCceE
Confidence 4456788999999999999999999765321110000 000012333322 23555543211 111 1234
Q ss_pred eEEEEecCCh-------------hh------------hHHHHHhhhh-----cCCEEEEE-EecCCCC------ChhHHH
Q psy15217 76 HYAHVDCPGH-------------AD------------YIKNMITGAA-----QMDGAILV-CSAADGP------MPQTRE 118 (396)
Q Consensus 76 ~~~iiDtpG~-------------~~------------~~~~~~~~~~-----~~d~~llV-vda~~g~------~~qt~e 118 (396)
++.++||-|. .+ |.....-|.+ .+-..++| -|.+-+. .....+
T Consensus 92 kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEer 171 (492)
T PF09547_consen 92 KVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEER 171 (492)
T ss_pred EEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHH
Confidence 6779999881 11 1222222222 12223332 3444322 244566
Q ss_pred HHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccc
Q psy15217 119 HILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKL 177 (396)
Q Consensus 119 ~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~ 177 (396)
.+..++..|.|++| ++|-.+=... +. ..+..++.+ + | ++|++|++...
T Consensus 172 vI~ELk~igKPFvi-llNs~~P~s~-et-~~L~~eL~e---k--Y---~vpVlpvnc~~ 219 (492)
T PF09547_consen 172 VIEELKEIGKPFVI-LLNSTKPYSE-ET-QELAEELEE---K--Y---DVPVLPVNCEQ 219 (492)
T ss_pred HHHHHHHhCCCEEE-EEeCCCCCCH-HH-HHHHHHHHH---H--h---CCcEEEeehHH
Confidence 77888999999555 5798774443 22 222223332 2 2 47899988865
No 458
>PRK13695 putative NTPase; Provisional
Probab=97.30 E-value=0.0013 Score=56.29 Aligned_cols=120 Identities=14% Similarity=0.099 Sum_probs=60.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeee------EE---ee-CCe--eEEEE
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHI------EY---ET-KAR--HYAHV 80 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~------~~---~~-~~~--~~~ii 80 (396)
++|+++|.+|+|||||+..+.+.....+ .....+ ......+..+....+.... .+ .. +.. .=.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G--~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 77 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEG--YKVGGF-YTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVV 77 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEE-EcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEE
Confidence 4799999999999999999876644311 110101 1100001111111111100 00 00 000 01133
Q ss_pred ecCChhhhHHHHHhh-hhcCCEEEEEEe---cCCCCChhHHHHHHHHHHcCCCeEEEEEecc
Q psy15217 81 DCPGHADYIKNMITG-AAQMDGAILVCS---AADGPMPQTREHILLARQVGVPYIVVFLNKA 138 (396)
Q Consensus 81 DtpG~~~~~~~~~~~-~~~~d~~llVvd---a~~g~~~qt~e~l~~~~~~~ip~iIvviNK~ 138 (396)
|.-|-+.+....... +..+|. +++| +.+....+.++.+..+...+.+ +|+++||.
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~-~i~v~h~~ 136 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKP-VIATLHRR 136 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCe-EEEEECch
Confidence 444445554443332 335565 7888 5555556777777777777877 55567874
No 459
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.27 E-value=0.0014 Score=72.50 Aligned_cols=120 Identities=22% Similarity=0.258 Sum_probs=61.5
Q ss_pred EEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhH--hhcCceEEeeeeEEeeCCeeEEEEecCCh-------
Q psy15217 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEE--KARGITINTAHIEYETKARHYAHVDCPGH------- 85 (396)
Q Consensus 15 i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e--~~~g~t~~~~~~~~~~~~~~~~iiDtpG~------- 85 (396)
.+++|+.|+||||++.+- +.. +. ..+....+ +..|-|.++... | ...-.++||+|.
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~-------~p---l~~~~~~~~~~~~~~t~~c~ww-f---~~~avliDtaG~y~~~~~~ 178 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLK-------FP---LAERLGAAALRGVGGTRNCDWW-F---TDEAVLIDTAGRYTTQDSD 178 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCC-------Cc---CchhhccccccCCCCCcccceE-e---cCCEEEEcCCCccccCCCc
Confidence 579999999999999874 110 00 00000001 111223322222 2 234579999991
Q ss_pred --------hhhHHHHHhh--hhcCCEEEEEEecCCCC---ChhHHHH-------HHHHH-H--cCCCeEEEEEeccCCCC
Q psy15217 86 --------ADYIKNMITG--AAQMDGAILVCSAADGP---MPQTREH-------ILLAR-Q--VGVPYIVVFLNKADMVD 142 (396)
Q Consensus 86 --------~~~~~~~~~~--~~~~d~~llVvda~~g~---~~qt~e~-------l~~~~-~--~~ip~iIvviNK~D~~~ 142 (396)
..|+....+. -...|++|++||+.+=. ..+-..| +..+. . ..+|..+ ++||||+..
T Consensus 179 ~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYv-v~Tk~Dll~ 257 (1169)
T TIGR03348 179 PEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYL-VLTKADLLA 257 (1169)
T ss_pred ccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEE-EEecchhhc
Confidence 1122222222 13579999999998622 1222222 22222 2 3678665 579999874
Q ss_pred -HHHHHHHH
Q psy15217 143 -DEELLELV 150 (396)
Q Consensus 143 -~~~~~~~i 150 (396)
..+.+..+
T Consensus 258 GF~~~f~~l 266 (1169)
T TIGR03348 258 GFEEFFADL 266 (1169)
T ss_pred CHHHHHHhC
Confidence 34444444
No 460
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.23 E-value=0.0034 Score=59.78 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
-.++.|.-|||||||+++|+..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3678899999999999999864
No 461
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.0024 Score=59.16 Aligned_cols=129 Identities=18% Similarity=0.219 Sum_probs=69.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCcccccc------ccCCChh-HhhcCceEEeee-------eEE-----
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYD------QIDAAPE-EKARGITINTAH-------IEY----- 70 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~------~~d~~~~-e~~~g~t~~~~~-------~~~----- 70 (396)
+.+.-|.++|-.|+||||.++.|.......+........ ..+.+.. -..-|+.+-... ..|
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 457889999999999999999998877665543221110 0111110 111233322111 111
Q ss_pred -eeCCeeEEEEecCCh----hhhHHHHHhhh---h-----cCCEEEEEEecCCCCChhHHHHHHHH-HHcCCCeEEEEEe
Q psy15217 71 -ETKARHYAHVDCPGH----ADYIKNMITGA---A-----QMDGAILVCSAADGPMPQTREHILLA-RQVGVPYIVVFLN 136 (396)
Q Consensus 71 -~~~~~~~~iiDtpG~----~~~~~~~~~~~---~-----~~d~~llVvda~~g~~~qt~e~l~~~-~~~~ip~iIvviN 136 (396)
.-.+..+.|+||+|. ...+.++..-. . .++-.++|+||..|-. ..++.... ...++.-+| +|
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn--al~QAk~F~eav~l~GiI--lT 292 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN--ALSQAKIFNEAVGLDGII--LT 292 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh--HHHHHHHHHHhcCCceEE--EE
Confidence 123577999999992 22333332221 1 2344888889998532 22222222 234666443 69
Q ss_pred ccCCCC
Q psy15217 137 KADMVD 142 (396)
Q Consensus 137 K~D~~~ 142 (396)
|+|-..
T Consensus 293 KlDgtA 298 (340)
T COG0552 293 KLDGTA 298 (340)
T ss_pred ecccCC
Confidence 999544
No 462
>PHA02518 ParA-like protein; Provisional
Probab=97.22 E-value=0.0069 Score=53.38 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=42.1
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHH---c--CCCeEEEEEeccCCC
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ---V--GVPYIVVFLNKADMV 141 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~---~--~ip~iIvviNK~D~~ 141 (396)
..+.+.|+||||... ..+...+..+|.+|+++.++.-......+.+..+.. . +.+.+.++.|+.+..
T Consensus 75 ~~~d~viiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 346799999999643 345566778999999999876433323333322222 2 566555666876643
No 463
>KOG4181|consensus
Probab=97.17 E-value=0.0073 Score=55.89 Aligned_cols=142 Identities=18% Similarity=0.127 Sum_probs=75.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccc--cCCChhHhhcCceEEeeeeEEeeCCeeE------------
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQ--IDAAPEEKARGITINTAHIEYETKARHY------------ 77 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~--~d~~~~e~~~g~t~~~~~~~~~~~~~~~------------ 77 (396)
..-|+++|.-|+|||||++.|.....+.. .+.|.+ ....-.|+.+..|..+... ...+.+
T Consensus 188 f~VIgvlG~QgsGKStllslLaans~~~d---yr~yvFRpvS~Ea~E~~~~qt~~Id~~---i~q~~i~fldtqpl~sfs 261 (491)
T KOG4181|consen 188 FTVIGVLGGQGSGKSTLLSLLAANSLDYD---YRQYVFRPVSPEADECIFAQTHKIDPN---IGQKSILFLDTQPLQSFS 261 (491)
T ss_pred eeEEEeecCCCccHHHHHHHHhccChHHh---hHHHhcccCChhhhhhhccceeccccc---cccceEEeeccccccchH
Confidence 45679999999999999998875532221 111111 1122234444444333211 111223
Q ss_pred -----EEEecCCh---------h--hhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHc---------------
Q psy15217 78 -----AHVDCPGH---------A--DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQV--------------- 126 (396)
Q Consensus 78 -----~iiDtpG~---------~--~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~--------------- 126 (396)
++.|+|-- . .-+..|..-++.++.+|+|+|.... .+....++.+..+
T Consensus 262 i~e~~i~~d~p~~~~~~~d~~~~~~~sL~~~AfLl~VcHivivV~d~~~d--~~lir~L~~Ae~~rP~laifrh~~~~~r 339 (491)
T KOG4181|consen 262 IRERHILLDTPPLMPVGKDSDHQDLYSLGTMAFLLSVCHIVIVVIDGLAD--EQLIRLLNAAERLRPTLAIFRHCKGYVR 339 (491)
T ss_pred HHhhhhccCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhEEEEEecchhH--HHHHHHHHHHHhhCcccCcccccccccc
Confidence 34555541 1 1144555667789999999997641 2333444444332
Q ss_pred -CCCeEEEEEeccCCCCHH-HHHHHHHHHHHHHHhhc
Q psy15217 127 -GVPYIVVFLNKADMVDDE-ELLELVEIEIRELLNKY 161 (396)
Q Consensus 127 -~ip~iIvviNK~D~~~~~-~~~~~i~~~~~~~l~~~ 161 (396)
..|+++++-||.-..+.. ...+.+...+..+++..
T Consensus 340 ~~~p~lVFv~~KA~riDf~pr~rerl~~~~~~l~~~S 376 (491)
T KOG4181|consen 340 DHMPQLVFVRAKAHRIDFEPRQRERLDKKLAYLYGPS 376 (491)
T ss_pred ccCcceEEEeccccccccChHHHHHHHHHHHHHhccc
Confidence 257888888987665531 22234444455554433
No 464
>KOG3859|consensus
Probab=97.07 E-value=0.0041 Score=55.76 Aligned_cols=137 Identities=17% Similarity=0.189 Sum_probs=73.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCCh---
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGH--- 85 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~--- 85 (396)
-.+||..+|..|-|||||+..|.....+.....- + ..++......+.+.-.+ -.++++||.|.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H-----------~-~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQ 108 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTH-----------T-LPNVKLQANTYELQESNVRLKLTIVDTVGFGDQ 108 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCcc-----------C-CCCceeecchhhhhhcCeeEEEEEEeecccccc
Confidence 3579999999999999999999865322211100 0 11222222222222222 24689999993
Q ss_pred ------------------hhhHHH------HHhhh--hcCCEEEEEEecCC-CCChhHHHHHHHHHHcCCCeEEEEEecc
Q psy15217 86 ------------------ADYIKN------MITGA--AQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKA 138 (396)
Q Consensus 86 ------------------~~~~~~------~~~~~--~~~d~~llVvda~~-g~~~qt~e~l~~~~~~~ip~iIvviNK~ 138 (396)
+.|+.. ++... +..+++++.|+.+- ++...+.-.+..+.. .+. ||-+|-|.
T Consensus 109 inK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVN-IIPvIAKa 186 (406)
T KOG3859|consen 109 INKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVN-IIPVIAKA 186 (406)
T ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhh-hHHHHHHh
Confidence 223222 11112 24678999988763 454444333332221 222 44467899
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 139 DMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 139 D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
|....++. ...+..+..-|...+
T Consensus 187 DtisK~eL-~~FK~kimsEL~sng 209 (406)
T KOG3859|consen 187 DTISKEEL-KRFKIKIMSELVSNG 209 (406)
T ss_pred hhhhHHHH-HHHHHHHHHHHHhcC
Confidence 99887543 334444444444444
No 465
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.07 E-value=0.0066 Score=46.15 Aligned_cols=74 Identities=22% Similarity=0.197 Sum_probs=57.1
Q ss_pred EEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecc-eeeCeeecCCeEEEEecccCccCC-CCC
Q psy15217 215 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR-KLLDQGQAGDNIGLLLRGTKREDV-ERG 292 (396)
Q Consensus 215 ~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~-~~~~~a~~G~~v~l~l~~~~~~~i-~~G 292 (396)
..|.++...++.|.+++..|.+|+|++||.+..+. ...+|+++...+ .++++|.||+.|.+ .|++ ++ ..|
T Consensus 3 g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~----~~gkVr~l~d~~g~~v~~a~Ps~~V~I--~G~~--~~P~aG 74 (95)
T cd03702 3 GVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGT----TYGKVRAMFDENGKRVKEAGPSTPVEI--LGLK--GVPQAG 74 (95)
T ss_pred EEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcc----cccEEEEEECCCCCCCCEECCCCcEEE--cCCC--CCCCCC
Confidence 45677778889999999999999999999998864 234899987764 78999999999887 3443 22 445
Q ss_pred eEEe
Q psy15217 293 QVLA 296 (396)
Q Consensus 293 ~vl~ 296 (396)
+.+.
T Consensus 75 d~~~ 78 (95)
T cd03702 75 DKFL 78 (95)
T ss_pred CEEE
Confidence 5554
No 466
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=96.97 E-value=0.0022 Score=55.75 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=49.4
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcC--CCeEEEEEeccCCCCHH
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVG--VPYIVVFLNKADMVDDE 144 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~--ip~iIvviNK~D~~~~~ 144 (396)
.+.+.|+|||+..... +...+..+|.+++++++..-....+...+..+..++ .+.+-+++||.+.-...
T Consensus 94 ~yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~~ 164 (195)
T PF01656_consen 94 DYDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNES 164 (195)
T ss_dssp TSSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCHH
T ss_pred cccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCccc
Confidence 3789999999855443 455667899999999997644455566666667666 33556678999987653
No 467
>KOG2743|consensus
Probab=96.93 E-value=0.01 Score=53.93 Aligned_cols=23 Identities=35% Similarity=0.176 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.--.+.|--|||||||++.++..
T Consensus 58 PvtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 58 PVTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred ceEEEEecccCChHHHHHHHHcc
Confidence 34468899999999999998754
No 468
>KOG2484|consensus
Probab=96.82 E-value=0.001 Score=62.54 Aligned_cols=58 Identities=24% Similarity=0.432 Sum_probs=41.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~ 85 (396)
+..++++|+|-+++||||++++|.....-..+. ..|+|.......+ +..+.|+|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~---------------~pGvT~smqeV~L---dk~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGN---------------VPGVTRSMQEVKL---DKKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCC---------------Cccchhhhhheec---cCCceeccCCce
Confidence 678999999999999999999998654322221 1256655443333 466899999993
No 469
>KOG1707|consensus
Probab=96.74 E-value=0.016 Score=57.27 Aligned_cols=132 Identities=15% Similarity=0.232 Sum_probs=73.6
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh-hh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH-AD 87 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~-~~ 87 (396)
.+.-+..-++|..++|||.|+..+++....+... .......+++.... ....+.+.+-|.+-. .+
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~------------~~~~~~~avn~v~~--~g~~k~LiL~ei~~~~~~ 487 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNT------------GTTKPRYAVNSVEV--KGQQKYLILREIGEDDQD 487 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccc------------cCCCCceeeeeeee--ccccceEEEeecCccccc
Confidence 3456788999999999999999998754322100 00011122222222 233344556565542 11
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHH----H-cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLAR----Q-VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~----~-~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
++.+ .-..+|.+.++.|.+. +...+++.... . ..+|.++| .+|+|+....+.+.. .-.++..+++
T Consensus 488 ~l~~---ke~~cDv~~~~YDsS~---p~sf~~~a~v~~~~~~~~~~Pc~~v-a~K~dlDe~~Q~~~i---qpde~~~~~~ 557 (625)
T KOG1707|consen 488 FLTS---KEAACDVACLVYDSSN---PRSFEYLAEVYNKYFDLYKIPCLMV-ATKADLDEVPQRYSI---QPDEFCRQLG 557 (625)
T ss_pred cccC---ccceeeeEEEecccCC---chHHHHHHHHHHHhhhccCCceEEE-eeccccchhhhccCC---ChHHHHHhcC
Confidence 1111 1157999999999885 33333332222 1 47886664 699999765332221 2366777777
Q ss_pred CC
Q psy15217 163 FP 164 (396)
Q Consensus 163 ~~ 164 (396)
++
T Consensus 558 i~ 559 (625)
T KOG1707|consen 558 LP 559 (625)
T ss_pred CC
Confidence 73
No 470
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.68 E-value=0.0038 Score=53.34 Aligned_cols=45 Identities=22% Similarity=0.117 Sum_probs=30.9
Q ss_pred CEEEEEEecCCCCChhHHHHHHH--HHHcCCCeEEEEEeccCCCCHHH
Q psy15217 100 DGAILVCSAADGPMPQTREHILL--ARQVGVPYIVVFLNKADMVDDEE 145 (396)
Q Consensus 100 d~~llVvda~~g~~~qt~e~l~~--~~~~~ip~iIvviNK~D~~~~~~ 145 (396)
|++++|+||.........+.... +...+.|.+ +++||+|+++.+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~I-lVlNK~DL~~~~~ 47 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLV-LVLNKIDLVPKEN 47 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEE-EEEehhhcCCHHH
Confidence 78999999988655544444444 333466755 5689999988644
No 471
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.67 E-value=0.015 Score=59.39 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=62.4
Q ss_pred EEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCc-cCCCCCeEEec
Q psy15217 219 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKR-EDVERGQVLAK 297 (396)
Q Consensus 219 ~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~-~~i~~G~vl~~ 297 (396)
.+|+.+. +.++..+|.+|.|+.|..|.- + +...-.+|.||+.+++++++|..|+-|++.+.+... .+++.||+|..
T Consensus 473 ~vf~~~~-~~i~G~~V~~G~i~~~~~v~r-~-~~~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~ 549 (590)
T TIGR00491 473 LVFRQSK-PAIVGVEVLTGVIRQGYPLMK-D-DGETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYV 549 (590)
T ss_pred eeeeCCC-CeEEEEEEecCEEecCCeEEe-c-CCEEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEE
Confidence 6788765 789999999999999998743 2 222336889999999999999999999999987432 68999999975
Q ss_pred C
Q psy15217 298 P 298 (396)
Q Consensus 298 ~ 298 (396)
.
T Consensus 550 ~ 550 (590)
T TIGR00491 550 D 550 (590)
T ss_pred e
Confidence 4
No 472
>KOG0781|consensus
Probab=96.66 E-value=0.0038 Score=60.13 Aligned_cols=133 Identities=21% Similarity=0.147 Sum_probs=71.4
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCcccc-ccccCCChh---------------------HhhcCceEEe-
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKS-YDQIDAAPE---------------------EKARGITINT- 65 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~-~~~~d~~~~---------------------e~~~g~t~~~- 65 (396)
.+.+.-|++||-.|+||||-+..+...+..+.-..... +.-...... |..+|-....
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~v 454 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGV 454 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHH
Confidence 35789999999999999999998887665443111100 000000011 1111111000
Q ss_pred ---eeeEEeeCCeeEEEEecCChhhh----HHHHHhh--hhcCCEEEEEEecCCCCC--hhHHHHHHHHHHcC----CCe
Q psy15217 66 ---AHIEYETKARHYAHVDCPGHADY----IKNMITG--AAQMDGAILVCSAADGPM--PQTREHILLARQVG----VPY 130 (396)
Q Consensus 66 ---~~~~~~~~~~~~~iiDtpG~~~~----~~~~~~~--~~~~d~~llVvda~~g~~--~qt~e~l~~~~~~~----ip~ 130 (396)
+...-...+..+.++||+|...- +...... ...+|.+++|=.|--|-. .|.++.=..+.... +.
T Consensus 455 ak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id- 533 (587)
T KOG0781|consen 455 AKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLID- 533 (587)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccc-
Confidence 00001224678999999994332 2222222 236899999977665432 34444433333333 34
Q ss_pred EEEEEeccCCCCH
Q psy15217 131 IVVFLNKADMVDD 143 (396)
Q Consensus 131 iIvviNK~D~~~~ 143 (396)
.| +++|+|.++.
T Consensus 534 ~~-~ltk~dtv~d 545 (587)
T KOG0781|consen 534 GI-LLTKFDTVDD 545 (587)
T ss_pred eE-EEEeccchhh
Confidence 34 3699999875
No 473
>CHL00175 minD septum-site determining protein; Validated
Probab=96.64 E-value=0.029 Score=51.96 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=46.4
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
.+.+.++|||+.-. ......+..+|.+++|+++.......+...+..+...+.+.+-+++|+++..
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~ 191 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPD 191 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChh
Confidence 56799999998543 2334455679999999988764445555566666667766666678999753
No 474
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.57 E-value=0.012 Score=50.05 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=21.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
..-++|+|..|||||||+.+|....
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHH
Confidence 3478999999999999999998754
No 475
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=96.57 E-value=0.28 Score=50.39 Aligned_cols=29 Identities=24% Similarity=0.183 Sum_probs=24.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhc
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKF 40 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~ 40 (396)
..-++|+|..|+|||||+.+|+.....++
T Consensus 10 ~~vi~ivG~s~sGKTTlie~li~~L~~~G 38 (597)
T PRK14491 10 IPLLGFCAYSGTGKTTLLEQLIPELNQRG 38 (597)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 44789999999999999999998776554
No 476
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.55 E-value=0.0064 Score=57.82 Aligned_cols=31 Identities=35% Similarity=0.299 Sum_probs=26.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhc
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKF 40 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~ 40 (396)
...-++.++|++|||||||..-|.+....++
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG 101 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLLARG 101 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHHhhcC
Confidence 4567899999999999999999987766554
No 477
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.53 E-value=0.02 Score=51.43 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=42.3
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHH------HcCCCeEEEEEeccC
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLAR------QVGVPYIVVFLNKAD 139 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~------~~~ip~iIvviNK~D 139 (396)
+.+.+.|+||||+.. ..+...+..+|.+|+.+.++.-....+.+.+..+. ..+++..+ ++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~i-v~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAI-LRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEE-EEEecc
Confidence 457899999999765 34455677899999988887544333333332222 23677554 679987
No 478
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.059 Score=44.79 Aligned_cols=30 Identities=37% Similarity=0.373 Sum_probs=25.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKK 39 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~ 39 (396)
+..++|.+.|.+|+|||||+..+......+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 457899999999999999999998776555
No 479
>KOG2423|consensus
Probab=96.51 E-value=0.0011 Score=62.21 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=25.1
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++.|+++|-+++|||+++|.|....
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~Kk 331 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKK 331 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcc
Confidence 5789999999999999999999997643
No 480
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.48 E-value=0.019 Score=43.70 Aligned_cols=61 Identities=20% Similarity=0.141 Sum_probs=49.5
Q ss_pred EEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec-ceeeCeeecCCeEEE
Q psy15217 215 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF-RKLLDQGQAGDNIGL 279 (396)
Q Consensus 215 ~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~-~~~~~~a~~G~~v~l 279 (396)
..|.++-..++.|++++..|.+|+|++||.+..+. ...+|+++... .+.+.+|.|++.|.+
T Consensus 3 g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~----~~GkVr~~~d~~g~~v~~a~Ps~~v~i 64 (95)
T cd03701 3 GTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGG----TYGKIRTMVDENGKALLEAGPSTPVEI 64 (95)
T ss_pred EEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECC----ccceEEEEECCCCCCccccCCCCCEEE
Confidence 45677777889999999999999999999998853 33568887654 468899999998844
No 481
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.47 E-value=0.023 Score=58.14 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=60.9
Q ss_pred EEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCc-cCCCCCeEEec
Q psy15217 219 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKR-EDVERGQVLAK 297 (396)
Q Consensus 219 ~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~-~~i~~G~vl~~ 297 (396)
.+|+.+. +.++..+|.+|.|+.|..|.- +. +....+|.|++.++++++++..|+-|++.+.+... .+++.||+|-.
T Consensus 475 ~vf~~~~-~~IaGc~V~~G~i~~~~~v~r-~~-g~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~~ 551 (586)
T PRK04004 475 YVFRQSD-PAIVGVEVLGGTIKPGVPLIK-ED-GKRVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILYV 551 (586)
T ss_pred eeEecCC-CeEEEEEEEeCEEecCCEEEE-EC-CEEEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 6888765 789999999999999998642 22 23346889999999999999999999999986421 58888988853
No 482
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.46 E-value=0.022 Score=55.41 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
..+|+|+|+.++|||||++.|...
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999865
No 483
>PRK01889 GTPase RsgA; Reviewed
Probab=96.33 E-value=0.0039 Score=59.79 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
-.++++|.+|+|||||++.|++...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4799999999999999999997543
No 484
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.28 E-value=0.0046 Score=42.79 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
..+|.|+.|+|||||+.++....
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999987543
No 485
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.19 E-value=0.02 Score=38.72 Aligned_cols=48 Identities=25% Similarity=0.332 Sum_probs=23.1
Q ss_pred HHHhhhh-cCCEEEEEEecCC--CCC--hhHHHHHHHHHHc-CCCeEEEEEeccC
Q psy15217 91 NMITGAA-QMDGAILVCSAAD--GPM--PQTREHILLARQV-GVPYIVVFLNKAD 139 (396)
Q Consensus 91 ~~~~~~~-~~d~~llVvda~~--g~~--~qt~e~l~~~~~~-~ip~iIvviNK~D 139 (396)
..+.+++ .++++++++|.++ |.. .|..-.-.+-... +.| +++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCC-EEEEEeccC
Confidence 3444554 5799999999987 432 2222222222233 677 556789998
No 486
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.18 E-value=0.02 Score=48.15 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
.++++|..|+|||||+.+|.....
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987543
No 487
>KOG1424|consensus
Probab=96.14 E-value=0.0064 Score=59.19 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=23.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
++.+.|+++|-+|+||||+||+|.+.
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~ 337 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGR 337 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcC
Confidence 34799999999999999999999875
No 488
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.06 E-value=0.095 Score=48.14 Aligned_cols=66 Identities=14% Similarity=0.058 Sum_probs=39.6
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHH----HcCCCeEEEEEeccCC
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLAR----QVGVPYIVVFLNKADM 140 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~----~~~ip~iIvviNK~D~ 140 (396)
.+.+.|+||||.... ..+...+..+|.+++++.+.........+.+..+. ..+++..-+++|++|.
T Consensus 115 ~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 467899999985321 11233366799999999886533332333332222 2356655456899983
No 489
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=96.05 E-value=0.019 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIAT 34 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~ 34 (396)
++++++|+.|+|||+|+.++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~ 22 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQ 22 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhc
Confidence 4799999999999999999854
No 490
>PHA00729 NTP-binding motif containing protein
Probab=96.04 E-value=0.015 Score=51.52 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
...+|++.|.+|+|||||..+|....
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998653
No 491
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.00 E-value=0.0075 Score=48.01 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.|+|.|.+||||||+...|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 492
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.99 E-value=0.0094 Score=55.29 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=23.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKK 39 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~ 39 (396)
.-.++++|+.|+||||++..|.......
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4589999999999999999998765443
No 493
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.96 E-value=0.036 Score=46.54 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=22.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKK 39 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~ 39 (396)
.-++|+|..|||||||+.+|......+
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 358999999999999999998765444
No 494
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.0056 Score=53.10 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
=-++|+|+.|+|||||+++|++...
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCccC
Confidence 3578999999999999999998765
No 495
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.92 E-value=0.086 Score=46.61 Aligned_cols=68 Identities=13% Similarity=-0.027 Sum_probs=38.2
Q ss_pred CCeeEEEEecCChhhhHHHHHhhh--hcCCEEEEEEecCCCCC---hhHHHHHHHHHHc-CCCeEEEEEeccCCC
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGA--AQMDGAILVCSAADGPM---PQTREHILLARQV-GVPYIVVFLNKADMV 141 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~--~~~d~~llVvda~~g~~---~qt~e~l~~~~~~-~ip~iIvviNK~D~~ 141 (396)
+.+.|.++||||....... ...+ ..+|.+++++.++.-.. ....+.+..++.. +.+...+++||++..
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 3578999999885421110 0112 36999999998864221 1222233333222 555554678999854
No 496
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.91 E-value=0.057 Score=47.89 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=38.8
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCC---hhHHHHHHHHH---HcCCCeEEEEEeccCC
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM---PQTREHILLAR---QVGVPYIVVFLNKADM 140 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~---~qt~e~l~~~~---~~~ip~iIvviNK~D~ 140 (396)
.+..|.|+|++|...-. ....+..+|.+|+=.-.+.-.. .+|..++.... ...+|+-| +.|++.-
T Consensus 82 ~~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~V-l~Tr~~~ 152 (231)
T PF07015_consen 82 SGFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAV-LFTRVPA 152 (231)
T ss_pred cCCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeE-EEecCCc
Confidence 34678999999965433 2333457898877665554222 23444433332 24689765 5799873
No 497
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.84 E-value=0.011 Score=48.68 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=22.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKK 39 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~ 39 (396)
.|+|+|+.|+|||||+..|+.....+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~ 27 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRR 27 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHc
Confidence 58999999999999999999875543
No 498
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=95.82 E-value=0.26 Score=44.99 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=47.6
Q ss_pred CCeeEEEEecCChhhhH-----HHHH----hhhh--cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 73 KARHYAHVDCPGHADYI-----KNMI----TGAA--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~-----~~~~----~~~~--~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
..+.+.++|||....-+ .... ..+. ..+.+++|+.+..-....+.+.+..+...|++..-+++||+...
T Consensus 123 ~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~ 202 (254)
T cd00550 123 AEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPE 202 (254)
T ss_pred CCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccc
Confidence 35789999999743321 1111 1122 24578899888876667788888899999999766778998753
No 499
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.0085 Score=51.43 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.+|.|+|++||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999865
No 500
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.77 E-value=0.01 Score=42.27 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEeCCCCChHHHHHHHHhh
Q psy15217 15 VGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 15 i~i~G~~~~GKSTLi~~L~~~ 35 (396)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999765
Done!