Query psy15217
Match_columns 396
No_of_seqs 282 out of 3303
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 23:51:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2e_A Elongation factor TU (E 100.0 4.5E-71 1.6E-75 536.2 45.8 385 10-396 1-387 (397)
2 2c78_A Elongation factor TU-A; 100.0 9.2E-71 3.2E-75 535.9 44.1 391 4-396 3-405 (405)
3 3j2k_7 ERF3, eukaryotic polype 100.0 4.8E-69 1.6E-73 527.3 48.6 377 7-396 12-439 (439)
4 3avx_A Elongation factor TS, e 100.0 5.9E-68 2E-72 552.2 43.2 393 2-396 286-678 (1289)
5 1f60_A Elongation factor EEF1A 100.0 3.5E-67 1.2E-71 516.8 39.4 380 8-395 3-440 (458)
6 1jny_A EF-1-alpha, elongation 100.0 6.1E-66 2.1E-70 505.7 41.4 377 9-396 3-429 (435)
7 3p26_A Elongation factor 1 alp 100.0 6.3E-66 2.2E-70 512.0 41.8 380 9-395 30-476 (483)
8 3mca_A HBS1, elongation factor 100.0 1E-66 3.5E-71 526.6 29.7 376 8-395 173-592 (592)
9 3izq_1 HBS1P, elongation facto 100.0 2.8E-65 9.4E-70 517.5 36.1 382 8-396 163-611 (611)
10 1r5b_A Eukaryotic peptide chai 100.0 1.3E-65 4.4E-70 506.8 32.6 374 9-396 40-467 (467)
11 1zun_B Sulfate adenylate trans 100.0 1.9E-61 6.6E-66 473.9 41.7 371 9-393 21-434 (434)
12 1wb1_A Translation elongation 100.0 5E-62 1.7E-66 482.3 20.1 359 8-395 15-394 (482)
13 1kk1_A EIF2gamma; initiation o 100.0 1.3E-58 4.4E-63 451.1 43.7 350 8-392 6-409 (410)
14 1s0u_A EIF-2-gamma, translatio 100.0 5E-59 1.7E-63 453.5 40.0 350 8-392 4-407 (408)
15 2elf_A Protein translation elo 100.0 2E-59 6.8E-64 448.4 34.1 334 14-392 23-370 (370)
16 3sjy_A Translation initiation 100.0 4.7E-56 1.6E-60 431.8 40.1 362 8-392 4-402 (403)
17 2ywe_A GTP-binding protein LEP 100.0 2.3E-37 8E-42 310.3 29.1 269 10-300 4-281 (600)
18 3vqt_A RF-3, peptide chain rel 100.0 8.6E-38 2.9E-42 312.6 25.2 270 10-300 29-401 (548)
19 3cb4_D GTP-binding protein LEP 100.0 1.7E-36 5.8E-41 304.7 29.3 268 11-300 3-279 (599)
20 3e1y_E Eukaryotic peptide chai 100.0 1.4E-36 4.8E-41 265.8 19.4 180 208-396 2-201 (204)
21 3tr5_A RF-3, peptide chain rel 100.0 2.9E-34 9.9E-39 285.6 26.5 271 10-299 11-382 (528)
22 4fn5_A EF-G 1, elongation fact 100.0 1.7E-34 5.8E-39 298.3 25.1 269 11-300 12-405 (709)
23 2rdo_7 EF-G, elongation factor 100.0 4.3E-33 1.5E-37 286.6 32.4 272 9-299 7-401 (704)
24 2h5e_A Peptide chain release f 100.0 3E-34 1E-38 285.8 23.0 272 10-300 11-384 (529)
25 3j25_A Tetracycline resistance 100.0 4.7E-37 1.6E-41 313.3 2.6 269 12-299 2-330 (638)
26 1dar_A EF-G, elongation factor 100.0 3.9E-32 1.3E-36 279.2 32.6 274 8-300 8-394 (691)
27 3izy_P Translation initiation 100.0 1.3E-35 4.4E-40 294.0 3.9 255 11-301 3-261 (537)
28 2dy1_A Elongation factor G; tr 100.0 2.1E-32 7E-37 280.3 26.4 269 10-300 7-367 (665)
29 1zo1_I IF2, translation initia 100.0 2.9E-34 9.9E-39 282.1 9.8 249 11-299 3-258 (501)
30 2xex_A Elongation factor G; GT 100.0 3E-31 1E-35 272.7 28.8 272 9-299 7-393 (693)
31 1g7s_A Translation initiation 100.0 7E-32 2.4E-36 271.5 23.3 259 11-300 4-329 (594)
32 1n0u_A EF-2, elongation factor 100.0 3E-29 1E-33 262.7 24.2 288 8-299 15-473 (842)
33 4dhe_A Probable GTP-binding pr 99.9 1.3E-20 4.5E-25 167.5 16.1 172 9-207 26-214 (223)
34 3iev_A GTP-binding protein ERA 99.8 6.6E-20 2.3E-24 171.2 17.4 164 8-204 6-182 (308)
35 2hjg_A GTP-binding protein ENG 99.8 3.1E-20 1E-24 181.8 15.7 151 10-180 173-335 (436)
36 2lkc_A Translation initiation 99.8 7.3E-21 2.5E-25 162.7 9.9 161 9-202 5-169 (178)
37 2dyk_A GTP-binding protein; GT 99.8 8E-20 2.7E-24 153.5 15.2 153 13-203 2-161 (161)
38 1wf3_A GTP-binding protein; GT 99.8 1.1E-19 3.9E-24 168.7 17.0 157 11-203 6-172 (301)
39 2efe_B Small GTP-binding prote 99.8 5.8E-20 2E-24 157.5 13.6 163 9-204 9-175 (181)
40 1svi_A GTP-binding protein YSX 99.8 4.1E-19 1.4E-23 154.2 18.2 162 9-203 20-194 (195)
41 2y8e_A RAB-protein 6, GH09086P 99.8 7.6E-20 2.6E-24 156.3 13.2 168 1-203 3-176 (179)
42 3pqc_A Probable GTP-binding pr 99.8 5.6E-19 1.9E-23 153.1 18.5 160 10-203 21-193 (195)
43 3t1o_A Gliding protein MGLA; G 99.8 3.5E-20 1.2E-24 161.1 10.7 174 1-202 3-190 (198)
44 1zd9_A ADP-ribosylation factor 99.8 2.6E-19 9.1E-24 154.8 15.4 162 8-203 18-184 (188)
45 2fg5_A RAB-22B, RAS-related pr 99.8 1.2E-19 4.1E-24 157.6 12.9 162 10-204 21-186 (192)
46 4dcu_A GTP-binding protein ENG 99.8 2.6E-19 8.9E-24 176.2 16.7 162 10-201 193-366 (456)
47 1r2q_A RAS-related protein RAB 99.8 1.3E-19 4.3E-24 153.5 12.3 161 10-203 4-168 (170)
48 1ek0_A Protein (GTP-binding pr 99.8 7.8E-20 2.7E-24 154.7 10.7 163 11-203 2-168 (170)
49 2hxs_A RAB-26, RAS-related pro 99.8 2.1E-19 7.1E-24 153.6 13.1 162 9-204 3-173 (178)
50 1wms_A RAB-9, RAB9, RAS-relate 99.8 8.5E-19 2.9E-23 149.6 16.2 160 8-202 3-172 (177)
51 1zj6_A ADP-ribosylation factor 99.8 3.5E-19 1.2E-23 153.8 13.8 162 10-206 14-180 (187)
52 4bas_A ADP-ribosylation factor 99.8 4.9E-19 1.7E-23 154.2 14.8 162 8-203 13-188 (199)
53 1upt_A ARL1, ADP-ribosylation 99.8 3.1E-19 1E-23 151.4 13.1 159 10-203 5-168 (171)
54 3tkl_A RAS-related protein RAB 99.8 3.9E-19 1.3E-23 154.4 13.4 158 10-202 14-177 (196)
55 2g6b_A RAS-related protein RAB 99.8 4.4E-19 1.5E-23 151.8 13.5 163 7-203 5-173 (180)
56 1mh1_A RAC1; GTP-binding, GTPa 99.8 5.3E-19 1.8E-23 152.1 13.9 165 11-205 4-181 (186)
57 1z0j_A RAB-22, RAS-related pro 99.8 4.4E-19 1.5E-23 150.2 13.0 161 10-203 4-168 (170)
58 1r8s_A ADP-ribosylation factor 99.8 1.1E-18 3.8E-23 146.9 15.2 156 13-203 1-161 (164)
59 2hup_A RAS-related protein RAB 99.8 8.6E-19 2.9E-23 153.4 14.9 160 10-203 27-192 (201)
60 2il1_A RAB12; G-protein, GDP, 99.8 6E-19 2.1E-23 153.2 13.7 161 8-202 22-188 (192)
61 2ew1_A RAS-related protein RAB 99.8 6.1E-19 2.1E-23 154.4 13.8 160 8-202 22-187 (201)
62 1z0f_A RAB14, member RAS oncog 99.8 5.7E-19 2E-23 150.8 13.2 161 9-202 12-176 (179)
63 4gzl_A RAS-related C3 botulinu 99.8 7.6E-19 2.6E-23 154.1 13.9 161 9-201 27-202 (204)
64 1ksh_A ARF-like protein 2; sma 99.8 5.4E-19 1.8E-23 152.4 12.6 159 10-203 16-179 (186)
65 1fzq_A ADP-ribosylation factor 99.8 1E-18 3.5E-23 150.2 14.3 160 9-203 13-177 (181)
66 1ega_A Protein (GTP-binding pr 99.8 7.6E-19 2.6E-23 163.4 14.4 159 11-204 7-175 (301)
67 2oil_A CATX-8, RAS-related pro 99.8 3.3E-19 1.1E-23 154.7 11.2 161 9-202 22-186 (193)
68 3bc1_A RAS-related protein RAB 99.8 1.5E-18 5.1E-23 150.2 15.3 159 9-202 8-183 (195)
69 2bme_A RAB4A, RAS-related prot 99.8 1.4E-18 4.8E-23 149.6 14.9 158 10-202 8-171 (186)
70 2p5s_A RAS and EF-hand domain 99.8 2.9E-19 1E-23 156.0 10.7 165 9-203 25-196 (199)
71 2nzj_A GTP-binding protein REM 99.8 1.3E-18 4.4E-23 148.1 14.2 159 10-202 2-167 (175)
72 2h57_A ADP-ribosylation factor 99.8 7.9E-19 2.7E-23 152.0 13.1 161 10-203 19-186 (190)
73 2j1l_A RHO-related GTP-binding 99.8 2.8E-18 9.6E-23 151.6 16.8 163 8-202 30-207 (214)
74 3i8s_A Ferrous iron transport 99.8 1.5E-19 5E-24 166.0 8.8 156 11-204 2-169 (274)
75 3clv_A RAB5 protein, putative; 99.8 1.1E-18 3.8E-23 152.2 14.0 173 10-202 5-202 (208)
76 2fh5_B SR-beta, signal recogni 99.8 2.2E-18 7.5E-23 152.1 15.7 169 9-201 4-213 (214)
77 1m2o_B GTP-binding protein SAR 99.8 1.1E-18 3.6E-23 151.4 13.4 158 9-201 20-189 (190)
78 1u8z_A RAS-related protein RAL 99.8 1.3E-18 4.4E-23 146.8 13.5 156 11-202 3-165 (168)
79 1c1y_A RAS-related protein RAP 99.8 1.1E-18 3.9E-23 147.2 13.1 158 11-202 2-165 (167)
80 2h17_A ADP-ribosylation factor 99.8 9.4E-19 3.2E-23 150.4 12.6 158 9-201 18-180 (181)
81 1zbd_A Rabphilin-3A; G protein 99.8 1.6E-18 5.5E-23 151.6 14.3 159 11-202 7-169 (203)
82 2a5j_A RAS-related protein RAB 99.8 8.1E-19 2.8E-23 152.1 12.1 162 8-202 17-182 (191)
83 3tw8_B RAS-related protein RAB 99.8 6.1E-19 2.1E-23 150.9 11.1 159 9-202 6-169 (181)
84 2gf9_A RAS-related protein RAB 99.8 6.1E-19 2.1E-23 152.6 11.2 160 10-202 20-183 (189)
85 3qq5_A Small GTP-binding prote 99.8 9.8E-20 3.3E-24 176.0 6.7 159 9-205 31-197 (423)
86 1z08_A RAS-related protein RAB 99.8 8.6E-19 2.9E-23 148.5 11.8 158 10-202 4-167 (170)
87 3dz8_A RAS-related protein RAB 99.8 9.4E-19 3.2E-23 151.7 12.3 160 10-202 21-184 (191)
88 3llu_A RAS-related GTP-binding 99.8 3.4E-18 1.2E-22 148.9 15.8 163 8-201 16-194 (196)
89 1kao_A RAP2A; GTP-binding prot 99.8 1.5E-18 5.3E-23 146.1 13.1 156 11-202 2-164 (167)
90 2erx_A GTP-binding protein DI- 99.8 2.3E-18 7.7E-23 146.0 13.9 160 11-204 2-167 (172)
91 2atx_A Small GTP binding prote 99.8 1.9E-18 6.5E-23 150.0 13.7 161 10-202 16-191 (194)
92 1ky3_A GTP-binding protein YPT 99.8 1.5E-18 5.2E-23 148.5 13.0 161 9-202 5-176 (182)
93 2fu5_C RAS-related protein RAB 99.8 6.2E-19 2.1E-23 151.5 10.5 158 10-202 6-169 (183)
94 3kkq_A RAS-related protein M-R 99.8 1.4E-18 4.6E-23 149.4 12.4 159 8-202 14-180 (183)
95 2gco_A H9, RHO-related GTP-bin 99.8 1.9E-18 6.5E-23 151.1 13.4 161 9-201 22-197 (201)
96 1g16_A RAS-related protein SEC 99.8 9.7E-19 3.3E-23 148.1 11.0 157 11-203 2-164 (170)
97 2b6h_A ADP-ribosylation factor 99.8 1.6E-18 5.4E-23 150.6 12.5 160 9-203 26-190 (192)
98 1f6b_A SAR1; gtpases, N-termin 99.8 1.5E-18 5E-23 151.6 12.3 159 9-202 22-197 (198)
99 1z2a_A RAS-related protein RAB 99.8 1E-18 3.6E-23 147.6 11.0 160 10-202 3-165 (168)
100 3cpj_B GTP-binding protein YPT 99.8 7.3E-19 2.5E-23 156.4 10.4 169 1-204 1-176 (223)
101 2bov_A RAla, RAS-related prote 99.8 2.9E-18 1E-22 150.0 14.1 160 7-202 9-175 (206)
102 1vg8_A RAS-related protein RAB 99.8 2.4E-18 8.1E-23 150.9 13.2 159 9-202 5-173 (207)
103 3iby_A Ferrous iron transport 99.8 4.2E-19 1.4E-23 161.2 8.6 151 13-201 2-164 (256)
104 2fv8_A H6, RHO-related GTP-bin 99.8 3.6E-18 1.2E-22 150.0 14.4 163 9-203 22-199 (207)
105 3q72_A GTP-binding protein RAD 99.8 1.9E-18 6.5E-23 145.8 12.0 156 12-202 2-162 (166)
106 2a9k_A RAS-related protein RAL 99.8 3.2E-18 1.1E-22 147.1 13.6 159 8-202 14-179 (187)
107 2o52_A RAS-related protein RAB 99.8 1.2E-18 4E-23 152.4 10.8 158 10-202 23-186 (200)
108 1z06_A RAS-related protein RAB 99.8 2.1E-18 7.2E-23 149.2 12.3 162 10-203 18-187 (189)
109 2gf0_A GTP-binding protein DI- 99.8 5.2E-18 1.8E-22 147.6 14.8 162 8-204 4-171 (199)
110 2qu8_A Putative nucleolar GTP- 99.8 6.6E-18 2.2E-22 150.8 15.6 163 10-202 27-203 (228)
111 1moz_A ARL1, ADP-ribosylation 99.8 7.4E-19 2.5E-23 150.9 8.9 158 10-202 16-178 (183)
112 4dsu_A GTPase KRAS, isoform 2B 99.8 2.7E-18 9.3E-23 148.0 12.5 156 10-202 2-164 (189)
113 3bwd_D RAC-like GTP-binding pr 99.8 1.4E-18 5E-23 148.9 10.5 161 10-203 6-180 (182)
114 2fn4_A P23, RAS-related protei 99.8 1.1E-18 3.8E-23 149.2 9.7 160 8-203 5-171 (181)
115 3reg_A RHO-like small GTPase; 99.8 1.3E-18 4.4E-23 151.2 10.2 164 7-203 18-187 (194)
116 1x3s_A RAS-related protein RAB 99.8 1.6E-18 5.4E-23 150.4 10.7 160 10-203 13-177 (195)
117 2ce2_X GTPase HRAS; signaling 99.8 5.7E-18 2E-22 142.3 13.7 155 11-202 2-163 (166)
118 2f7s_A C25KG, RAS-related prot 99.8 7.6E-18 2.6E-22 149.0 15.0 155 10-202 23-197 (217)
119 3t5g_A GTP-binding protein RHE 99.8 1E-18 3.5E-23 149.9 9.0 158 10-203 4-168 (181)
120 2wji_A Ferrous iron transport 99.8 1.7E-18 5.9E-23 146.5 10.3 153 12-202 3-163 (165)
121 3a1s_A Iron(II) transport prot 99.8 1.2E-18 4E-23 158.5 9.8 156 10-203 3-166 (258)
122 3cph_A RAS-related protein SEC 99.8 1.8E-18 6.2E-23 152.3 10.7 157 10-202 18-180 (213)
123 2j0v_A RAC-like GTP-binding pr 99.8 2.5E-18 8.6E-23 151.5 11.4 167 9-205 6-181 (212)
124 3oes_A GTPase rhebl1; small GT 99.8 1E-18 3.5E-23 152.8 8.8 159 10-203 22-186 (201)
125 1mky_A Probable GTP-binding pr 99.8 9.9E-18 3.4E-22 164.1 16.7 154 13-203 2-165 (439)
126 2bcg_Y Protein YP2, GTP-bindin 99.8 3.1E-18 1.1E-22 150.2 11.3 158 10-202 6-169 (206)
127 2x77_A ADP-ribosylation factor 99.8 1.1E-18 3.8E-23 150.9 8.2 159 10-203 20-183 (189)
128 3k53_A Ferrous iron transport 99.8 1.7E-18 5.7E-23 158.9 9.7 155 11-203 2-165 (271)
129 4dkx_A RAS-related protein RAB 99.8 5.5E-18 1.9E-22 149.8 12.6 162 8-204 9-176 (216)
130 3r7w_A Gtpase1, GTP-binding pr 99.8 4.8E-17 1.7E-21 151.7 19.5 163 11-202 2-179 (307)
131 3q85_A GTP-binding protein REM 99.8 5.7E-18 1.9E-22 143.3 12.0 156 12-202 2-165 (169)
132 2hjg_A GTP-binding protein ENG 99.8 2.8E-18 9.4E-23 167.9 11.4 154 13-204 4-165 (436)
133 4djt_A GTP-binding nuclear pro 99.7 1.4E-18 4.7E-23 153.9 8.2 163 6-203 5-174 (218)
134 3gj0_A GTP-binding nuclear pro 99.7 1.2E-18 4E-23 154.8 7.6 164 5-203 8-174 (221)
135 2yc2_C IFT27, small RAB-relate 99.7 1.9E-18 6.5E-23 151.4 8.8 160 10-202 18-190 (208)
136 3con_A GTPase NRAS; structural 99.7 1.3E-17 4.6E-22 144.1 13.5 156 10-202 19-181 (190)
137 1mky_A Probable GTP-binding pr 99.7 2.5E-17 8.7E-22 161.2 16.6 163 10-202 178-353 (439)
138 3gee_A MNME, tRNA modification 99.7 9.8E-18 3.4E-22 164.7 13.0 156 11-203 232-397 (476)
139 1m7b_A RND3/RHOE small GTP-bin 99.7 1.9E-17 6.5E-22 142.5 13.1 162 9-201 4-180 (184)
140 3q3j_B RHO-related GTP-binding 99.7 1.2E-17 4.2E-22 147.5 12.1 164 9-203 24-202 (214)
141 2xtp_A GTPase IMAP family memb 99.7 1.3E-17 4.6E-22 151.8 12.5 165 10-203 20-207 (260)
142 2q3h_A RAS homolog gene family 99.7 3.4E-17 1.2E-21 142.9 14.5 162 9-202 17-193 (201)
143 2wjg_A FEOB, ferrous iron tran 99.7 5.8E-18 2E-22 146.0 9.3 157 11-205 6-170 (188)
144 3o47_A ADP-ribosylation factor 99.7 5.3E-18 1.8E-22 159.6 9.5 159 10-203 163-326 (329)
145 2gj8_A MNME, tRNA modification 99.7 1.3E-17 4.6E-22 142.1 11.2 153 11-204 3-166 (172)
146 3cbq_A GTP-binding protein REM 99.7 2E-17 6.8E-22 144.0 12.4 160 9-203 20-187 (195)
147 3ihw_A Centg3; RAS, centaurin, 99.7 2.3E-17 7.8E-22 142.2 12.2 157 7-202 15-178 (184)
148 3b1v_A Ferrous iron uptake tra 99.7 5.1E-18 1.7E-22 155.2 7.8 153 12-203 3-163 (272)
149 3t5d_A Septin-7; GTP-binding p 99.7 6E-17 2E-21 148.7 14.6 167 11-203 7-203 (274)
150 4dcu_A GTP-binding protein ENG 99.7 2.6E-17 9E-22 161.9 12.6 155 11-203 22-184 (456)
151 2zej_A Dardarin, leucine-rich 99.7 6E-17 2.1E-21 139.5 12.7 167 12-203 2-177 (184)
152 2atv_A RERG, RAS-like estrogen 99.7 6.8E-17 2.3E-21 140.5 13.0 157 10-202 26-189 (196)
153 1gwn_A RHO-related GTP-binding 99.7 7.1E-17 2.4E-21 141.7 12.9 161 10-201 26-201 (205)
154 3lxw_A GTPase IMAP family memb 99.7 1E-16 3.4E-21 144.9 14.0 168 9-203 18-207 (247)
155 2cxx_A Probable GTP-binding pr 99.7 7.9E-17 2.7E-21 138.9 12.7 154 13-203 2-183 (190)
156 3c5c_A RAS-like protein 12; GD 99.7 5E-17 1.7E-21 140.4 11.1 160 8-202 17-184 (187)
157 3l0i_B RAS-related protein RAB 99.7 4.1E-19 1.4E-23 155.1 -2.5 159 10-203 31-195 (199)
158 2iwr_A Centaurin gamma 1; ANK 99.7 1.2E-16 4E-21 136.5 12.7 153 10-202 5-167 (178)
159 1xzp_A Probable tRNA modificat 99.7 9.4E-17 3.2E-21 157.8 12.5 152 12-202 243-403 (482)
160 3lvq_E ARF-GAP with SH3 domain 99.7 1.6E-16 5.3E-21 158.3 14.1 160 10-204 320-484 (497)
161 2wkq_A NPH1-1, RAS-related C3 99.7 3.2E-16 1.1E-20 147.6 14.4 162 10-203 153-329 (332)
162 3th5_A RAS-related C3 botulinu 99.5 2.7E-18 9.3E-23 150.4 0.0 159 10-200 28-201 (204)
163 3geh_A MNME, tRNA modification 99.7 1.6E-16 5.3E-21 155.6 11.8 155 11-205 223-385 (462)
164 1nrj_B SR-beta, signal recogni 99.7 1.9E-16 6.7E-21 139.9 10.1 146 9-180 9-170 (218)
165 3lxx_A GTPase IMAP family memb 99.7 1.4E-15 4.9E-20 136.6 15.0 167 10-202 27-212 (239)
166 2g3y_A GTP-binding protein GEM 99.6 2E-15 6.7E-20 132.9 13.7 159 10-202 35-201 (211)
167 1lnz_A SPO0B-associated GTP-bi 99.6 2.5E-16 8.5E-21 148.3 7.6 155 13-204 159-330 (342)
168 2qtf_A Protein HFLX, GTP-bindi 99.6 2.9E-15 9.8E-20 142.5 14.1 160 14-205 181-355 (364)
169 3r7w_B Gtpase2, GTP-binding pr 99.6 2.3E-15 7.7E-20 139.5 12.5 161 14-203 1-173 (331)
170 1pui_A ENGB, probable GTP-bind 99.6 1.3E-14 4.5E-19 127.2 15.8 162 10-203 24-198 (210)
171 2e87_A Hypothetical protein PH 99.6 1.4E-14 4.7E-19 137.9 16.1 156 10-202 165-334 (357)
172 2cjw_A GTP-binding protein GEM 99.6 7.5E-15 2.6E-19 127.3 12.4 159 10-202 4-170 (192)
173 3dpu_A RAB family protein; roc 99.6 1.2E-15 4E-20 153.2 8.0 160 9-203 38-207 (535)
174 2f9l_A RAB11B, member RAS onco 99.6 8.3E-15 2.8E-19 127.6 11.6 157 11-202 4-166 (199)
175 2j69_A Bacterial dynamin-like 99.6 1.9E-14 6.5E-19 148.0 15.7 127 75-202 174-323 (695)
176 3def_A T7I23.11 protein; chlor 99.6 1.2E-14 4.1E-19 132.4 12.4 118 10-142 34-165 (262)
177 2qag_A Septin-2, protein NEDD5 99.6 7E-15 2.4E-19 139.9 9.7 173 11-205 36-238 (361)
178 1h65_A Chloroplast outer envel 99.6 6E-14 2E-18 128.3 15.4 180 10-205 37-246 (270)
179 2aka_B Dynamin-1; fusion prote 99.6 1.5E-14 5E-19 134.3 11.1 175 10-200 24-249 (299)
180 1jwy_B Dynamin A GTPase domain 99.5 8.6E-15 2.9E-19 136.9 8.6 119 73-204 129-262 (315)
181 2ged_A SR-beta, signal recogni 99.5 1.4E-14 4.9E-19 125.2 8.1 113 10-143 46-171 (193)
182 3p32_A Probable GTPase RV1496/ 99.5 2.2E-14 7.5E-19 136.4 9.9 174 9-203 76-283 (355)
183 1oix_A RAS-related protein RAB 99.5 4.6E-14 1.6E-18 122.1 10.6 157 10-201 27-189 (191)
184 3c5h_A Glucocorticoid receptor 99.5 8E-14 2.7E-18 126.4 11.8 85 98-202 162-253 (255)
185 2p67_A LAO/AO transport system 99.5 3.6E-13 1.2E-17 127.2 13.4 174 10-202 54-259 (341)
186 2qpt_A EH domain-containing pr 99.4 7.8E-13 2.7E-17 132.3 12.9 136 10-146 63-236 (550)
187 1wxq_A GTP-binding protein; st 99.4 2.4E-13 8.3E-18 130.6 8.5 83 13-111 1-114 (397)
188 2www_A Methylmalonic aciduria 99.4 4.3E-12 1.5E-16 120.1 15.4 173 11-202 73-277 (349)
189 2wsm_A Hydrogenase expression/ 99.4 6.7E-13 2.3E-17 117.3 6.8 165 11-203 29-213 (221)
190 2x2e_A Dynamin-1; nitration, h 99.4 5.7E-13 2E-17 126.5 6.6 163 11-179 30-243 (353)
191 1yrb_A ATP(GTP)binding protein 99.3 3.7E-11 1.3E-15 109.0 17.4 113 75-203 109-256 (262)
192 1udx_A The GTP-binding protein 99.3 6.3E-12 2.2E-16 121.0 12.6 154 13-203 158-324 (416)
193 3zvr_A Dynamin-1; hydrolase, D 99.3 1.3E-12 4.3E-17 133.7 5.4 164 11-180 50-264 (772)
194 3t34_A Dynamin-related protein 99.3 1.5E-11 5.2E-16 117.1 11.0 98 73-179 134-246 (360)
195 1cip_A Protein (guanine nucleo 99.2 2.6E-11 8.9E-16 114.5 11.2 131 61-202 179-342 (353)
196 1xe1_A Hypothetical protein PF 99.2 1.6E-10 5.5E-15 88.4 13.3 83 209-297 31-113 (116)
197 2qag_C Septin-7; cell cycle, c 99.2 6.1E-11 2.1E-15 114.2 13.1 163 11-200 30-223 (418)
198 2qm8_A GTPase/ATPase; G protei 99.2 4.9E-11 1.7E-15 112.2 10.7 173 10-202 53-259 (337)
199 1zcb_A G alpha I/13; GTP-bindi 99.2 9.6E-11 3.3E-15 110.9 12.5 125 66-201 192-350 (362)
200 2qnr_A Septin-2, protein NEDD5 99.2 7.6E-11 2.6E-15 109.2 10.6 153 11-178 17-199 (301)
201 4a9a_A Ribosome-interacting GT 99.1 8.3E-11 2.8E-15 111.4 7.0 112 11-141 71-195 (376)
202 1jal_A YCHF protein; nucleotid 99.1 4.5E-10 1.6E-14 105.8 11.6 82 13-110 3-108 (363)
203 3ohm_A Guanine nucleotide-bind 99.1 1E-09 3.4E-14 102.1 12.9 131 60-201 152-315 (327)
204 4fid_A G protein alpha subunit 99.1 7.9E-10 2.7E-14 103.2 12.1 83 59-142 145-242 (340)
205 2j37_W Signal recognition part 99.1 2.9E-10 1E-14 111.8 8.7 129 10-143 99-255 (504)
206 2dby_A GTP-binding protein; GD 99.0 4E-09 1.4E-13 99.9 13.2 86 13-110 2-111 (368)
207 3sop_A Neuronal-specific septi 99.0 8.5E-09 2.9E-13 93.7 14.2 142 12-163 2-174 (270)
208 2hf9_A Probable hydrogenase ni 98.9 3.1E-09 1.1E-13 93.8 9.3 167 10-202 36-222 (226)
209 2qag_B Septin-6, protein NEDD5 98.9 9.3E-09 3.2E-13 98.7 12.4 144 12-175 42-217 (427)
210 1tq4_A IIGP1, interferon-induc 98.8 2.7E-07 9.3E-12 88.5 17.3 168 12-205 69-254 (413)
211 2ohf_A Protein OLA1, GTP-bindi 98.7 2.1E-08 7.1E-13 95.4 6.7 85 10-110 20-128 (396)
212 1u0l_A Probable GTPase ENGC; p 98.6 8.9E-08 3.1E-12 88.5 7.5 103 76-199 64-168 (301)
213 3dm5_A SRP54, signal recogniti 98.5 9.7E-07 3.3E-11 85.1 14.1 128 11-143 99-254 (443)
214 3ec1_A YQEH GTPase; atnos1, at 98.5 4.9E-09 1.7E-13 99.8 -2.3 118 12-143 162-289 (369)
215 3h2y_A GTPase family protein; 98.5 1.1E-08 3.8E-13 97.2 -0.6 119 12-143 160-288 (368)
216 1azs_C GS-alpha; complex (lyas 98.5 5.5E-07 1.9E-11 85.9 10.3 79 62-141 204-297 (402)
217 2v3c_C SRP54, signal recogniti 98.5 6.5E-07 2.2E-11 86.6 10.4 130 11-143 98-253 (432)
218 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 4.4E-07 1.5E-11 86.4 8.1 86 10-110 18-127 (392)
219 1j8m_F SRP54, signal recogniti 98.4 1.4E-06 4.6E-11 80.2 10.7 127 12-143 98-254 (297)
220 2xtz_A Guanine nucleotide-bind 98.4 8.2E-07 2.8E-11 83.6 8.9 67 74-141 182-263 (354)
221 3kl4_A SRP54, signal recogniti 98.3 1.4E-06 4.9E-11 83.9 9.5 127 11-143 96-253 (433)
222 2xxa_A Signal recognition part 98.2 5.2E-06 1.8E-10 80.3 10.8 127 10-142 98-254 (433)
223 1puj_A YLQF, conserved hypothe 98.2 4E-06 1.4E-10 76.5 8.5 100 79-202 3-104 (282)
224 3l82_B F-box only protein 4; T 98.1 5.1E-06 1.8E-10 71.2 7.8 105 82-203 109-222 (227)
225 1f5n_A Interferon-induced guan 98.1 1.5E-06 5E-11 86.9 4.7 103 10-125 36-147 (592)
226 1puj_A YLQF, conserved hypothe 98.1 3.1E-06 1.1E-10 77.2 5.3 58 10-85 118-175 (282)
227 3h2y_A GTPase family protein; 98.1 1.2E-05 4.2E-10 76.1 9.4 102 84-202 55-158 (368)
228 3ec1_A YQEH GTPase; atnos1, at 98.1 6.7E-06 2.3E-10 78.0 7.5 109 78-202 52-160 (369)
229 1d1n_A Initiation factor 2; be 98.0 5.5E-06 1.9E-10 61.6 5.2 80 215-296 9-89 (99)
230 2yv5_A YJEQ protein; hydrolase 98.0 2.1E-05 7.1E-10 72.5 10.5 96 85-198 66-163 (302)
231 2yhs_A FTSY, cell division pro 98.0 1.9E-05 6.5E-10 76.9 10.4 126 11-142 292-452 (503)
232 3e70_C DPA, signal recognition 98.0 3.9E-05 1.3E-09 71.4 11.9 129 10-142 127-282 (328)
233 2crv_A IF-2MT, translation ini 98.0 2.7E-05 9.2E-10 59.9 8.2 82 214-297 12-98 (120)
234 1zu4_A FTSY; GTPase, signal re 97.9 2.9E-05 9.9E-10 72.1 9.5 128 10-142 103-268 (320)
235 3l2o_B F-box only protein 4; s 97.8 3.6E-05 1.2E-09 69.3 7.2 105 82-203 194-307 (312)
236 1rj9_A FTSY, signal recognitio 97.8 0.0001 3.6E-09 67.8 10.3 128 11-142 101-261 (304)
237 2ffh_A Protein (FFH); SRP54, s 97.8 5.4E-05 1.9E-09 72.8 8.5 126 11-142 97-251 (425)
238 3szr_A Interferon-induced GTP- 97.8 0.00015 5.1E-09 73.3 12.1 23 14-36 47-69 (608)
239 3cnl_A YLQF, putative uncharac 97.8 1.8E-05 6.3E-10 71.3 4.7 93 83-201 5-98 (262)
240 1vma_A Cell division protein F 97.7 9.3E-05 3.2E-09 68.1 9.2 127 11-143 103-264 (306)
241 3cnl_A YLQF, putative uncharac 97.7 1.1E-05 3.9E-10 72.7 2.9 57 13-87 100-156 (262)
242 4dzz_A Plasmid partitioning pr 97.7 0.00026 9E-09 60.8 10.6 123 14-142 3-144 (206)
243 1zo1_I IF2, translation initia 97.6 0.00025 8.5E-09 69.6 11.1 104 191-297 388-492 (501)
244 2px0_A Flagellar biosynthesis 97.5 7.3E-05 2.5E-09 68.6 5.3 128 11-143 104-254 (296)
245 1ls1_A Signal recognition part 97.4 0.00058 2E-08 62.5 9.6 129 11-143 97-252 (295)
246 3b9q_A Chloroplast SRP recepto 97.4 0.00085 2.9E-08 61.6 10.6 129 11-142 99-260 (302)
247 3q5d_A Atlastin-1; G protein, 97.3 0.00049 1.7E-08 66.4 8.6 28 9-36 64-91 (447)
248 1t9h_A YLOQ, probable GTPase E 97.3 0.00024 8.3E-09 65.2 6.0 78 95-179 83-162 (307)
249 2og2_A Putative signal recogni 97.3 0.0011 3.8E-08 62.2 10.0 128 11-143 156-318 (359)
250 2ph1_A Nucleotide-binding prot 97.3 0.0038 1.3E-07 55.8 13.0 68 73-140 127-194 (262)
251 3kjh_A CO dehydrogenase/acetyl 97.2 0.00051 1.7E-08 60.8 6.8 65 73-139 130-194 (254)
252 3izy_P Translation initiation 97.2 0.0011 3.8E-08 65.6 9.8 105 190-296 426-534 (537)
253 1g7s_A Translation initiation 97.2 0.0035 1.2E-07 62.9 12.7 84 212-298 463-549 (594)
254 3cwq_A Para family chromosome 97.1 0.0031 1.1E-07 54.4 10.9 122 15-142 3-134 (209)
255 1hyq_A MIND, cell division inh 96.9 0.0038 1.3E-07 55.8 9.3 68 74-143 110-177 (263)
256 2rcn_A Probable GTPase ENGC; Y 96.7 0.0097 3.3E-07 55.7 10.7 74 96-178 128-203 (358)
257 3la6_A Tyrosine-protein kinase 96.6 0.0042 1.5E-07 56.4 7.7 68 74-142 201-268 (286)
258 3cio_A ETK, tyrosine-protein k 96.6 0.028 9.7E-07 51.3 13.1 66 75-141 214-279 (299)
259 3bfv_A CAPA1, CAPB2, membrane 96.6 0.015 5.2E-07 52.3 11.0 68 74-142 191-258 (271)
260 2oze_A ORF delta'; para, walke 96.5 0.036 1.2E-06 50.3 13.2 67 74-142 154-226 (298)
261 1bif_A 6-phosphofructo-2-kinas 96.4 0.0044 1.5E-07 60.6 6.5 105 10-129 37-151 (469)
262 3end_A Light-independent proto 96.3 0.0075 2.6E-07 55.2 7.1 66 74-140 156-225 (307)
263 1ye8_A Protein THEP1, hypothet 96.2 0.0028 9.6E-08 53.3 3.5 24 13-36 1-24 (178)
264 3ea0_A ATPase, para family; al 96.2 0.03 1E-06 49.0 10.3 67 74-142 118-186 (245)
265 1t9h_A YLOQ, probable GTPase E 96.2 0.0013 4.6E-08 60.3 1.4 23 13-35 174-196 (307)
266 4ido_A Atlastin-1; GTPase, GTP 96.1 0.017 5.8E-07 55.5 8.9 28 9-36 64-91 (457)
267 3k9g_A PF-32 protein; ssgcid, 96.1 0.025 8.7E-07 50.4 9.6 66 73-141 143-210 (267)
268 3ug7_A Arsenical pump-driving 96.0 0.23 7.8E-06 46.2 16.1 65 99-163 237-306 (349)
269 3q9l_A Septum site-determining 96.0 0.017 5.7E-07 51.2 7.9 65 74-140 113-185 (260)
270 1lvg_A Guanylate kinase, GMP k 96.0 0.0034 1.2E-07 53.7 2.9 24 13-36 5-28 (198)
271 1kgd_A CASK, peripheral plasma 95.9 0.004 1.4E-07 52.3 3.2 24 13-36 6-29 (180)
272 1zp6_A Hypothetical protein AT 95.9 0.0055 1.9E-07 51.7 3.8 25 11-35 8-32 (191)
273 3c8u_A Fructokinase; YP_612366 95.8 0.0058 2E-07 52.6 3.8 28 10-37 20-47 (208)
274 3asz_A Uridine kinase; cytidin 95.7 0.0067 2.3E-07 52.1 3.9 27 10-36 4-30 (211)
275 3a00_A Guanylate kinase, GMP k 95.7 0.0054 1.9E-07 51.7 3.3 24 14-37 3-26 (186)
276 1znw_A Guanylate kinase, GMP k 95.7 0.0053 1.8E-07 52.8 3.3 24 13-36 21-44 (207)
277 3tr0_A Guanylate kinase, GMP k 95.7 0.0055 1.9E-07 52.3 3.2 24 13-36 8-31 (205)
278 2afh_E Nitrogenase iron protei 95.6 0.019 6.6E-07 51.9 6.4 67 74-140 118-189 (289)
279 1z6g_A Guanylate kinase; struc 95.6 0.0069 2.4E-07 52.6 3.3 24 13-36 24-47 (218)
280 1htw_A HI0065; nucleotide-bind 95.5 0.0075 2.6E-07 49.6 3.3 25 12-36 33-57 (158)
281 1cp2_A CP2, nitrogenase iron p 95.5 0.066 2.2E-06 47.7 9.8 68 74-141 115-187 (269)
282 1s96_A Guanylate kinase, GMP k 95.5 0.0073 2.5E-07 52.5 3.2 26 12-37 16-41 (219)
283 3zq6_A Putative arsenical pump 95.5 1.1 3.8E-05 41.0 18.3 42 100-141 223-264 (324)
284 3tau_A Guanylate kinase, GMP k 95.4 0.011 3.7E-07 50.9 3.9 26 11-36 7-32 (208)
285 4eun_A Thermoresistant glucoki 95.4 0.01 3.4E-07 50.7 3.6 26 11-36 28-53 (200)
286 3tif_A Uncharacterized ABC tra 95.3 0.0073 2.5E-07 53.2 2.6 23 14-36 33-55 (235)
287 4gp7_A Metallophosphoesterase; 95.3 0.009 3.1E-07 49.7 2.9 21 13-33 10-30 (171)
288 2j41_A Guanylate kinase; GMP, 95.3 0.012 4E-07 50.2 3.8 25 12-36 6-30 (207)
289 1knq_A Gluconate kinase; ALFA/ 95.2 0.015 5.1E-07 48.3 4.2 24 12-35 8-31 (175)
290 2pcj_A ABC transporter, lipopr 95.2 0.0089 3E-07 52.2 2.9 22 14-35 32-53 (224)
291 2onk_A Molybdate/tungstate ABC 95.2 0.011 3.8E-07 52.2 3.3 24 13-36 25-48 (240)
292 3ney_A 55 kDa erythrocyte memb 95.2 0.014 4.9E-07 49.7 3.9 25 12-36 19-43 (197)
293 3b85_A Phosphate starvation-in 95.1 0.011 3.6E-07 51.0 3.0 22 14-35 24-45 (208)
294 2cbz_A Multidrug resistance-as 95.0 0.011 3.7E-07 52.2 2.8 22 14-35 33-54 (237)
295 2pze_A Cystic fibrosis transme 95.0 0.011 3.7E-07 51.8 2.8 22 14-35 36-57 (229)
296 2bdt_A BH3686; alpha-beta prot 95.0 0.015 5.1E-07 49.0 3.5 21 14-34 4-24 (189)
297 1kag_A SKI, shikimate kinase I 95.0 0.014 4.7E-07 48.3 3.2 23 13-35 5-27 (173)
298 1sgw_A Putative ABC transporte 95.0 0.011 3.6E-07 51.3 2.6 23 14-36 37-59 (214)
299 2d2e_A SUFC protein; ABC-ATPas 95.0 0.014 4.7E-07 51.9 3.3 22 14-35 31-52 (250)
300 1mv5_A LMRA, multidrug resista 95.0 0.011 3.9E-07 52.2 2.8 23 14-36 30-52 (243)
301 3aez_A Pantothenate kinase; tr 95.0 0.017 5.9E-07 53.0 4.1 29 9-37 87-115 (312)
302 2v9p_A Replication protein E1; 95.0 0.014 4.9E-07 53.3 3.5 25 12-36 126-150 (305)
303 2rcn_A Probable GTPase ENGC; Y 95.0 0.012 4.3E-07 54.9 3.1 24 13-36 216-239 (358)
304 3gfo_A Cobalt import ATP-bindi 94.9 0.011 3.6E-07 53.4 2.6 23 14-36 36-58 (275)
305 1g6h_A High-affinity branched- 94.9 0.012 4E-07 52.6 2.8 23 14-36 35-57 (257)
306 2ff7_A Alpha-hemolysin translo 94.9 0.012 4.1E-07 52.2 2.8 23 14-36 37-59 (247)
307 1b0u_A Histidine permease; ABC 94.9 0.011 3.7E-07 53.0 2.6 22 14-35 34-55 (262)
308 3zvl_A Bifunctional polynucleo 94.9 0.11 3.6E-06 49.8 9.6 24 12-35 258-281 (416)
309 1np6_A Molybdopterin-guanine d 94.9 0.018 6.2E-07 48.1 3.7 25 13-37 7-31 (174)
310 1ji0_A ABC transporter; ATP bi 94.9 0.013 4.3E-07 51.8 2.8 23 14-36 34-56 (240)
311 2jeo_A Uridine-cytidine kinase 94.9 0.018 6.2E-07 50.8 3.9 26 11-36 24-49 (245)
312 4g1u_C Hemin import ATP-bindin 94.9 0.012 4E-07 52.9 2.6 23 14-36 39-61 (266)
313 2i3b_A HCR-ntpase, human cance 94.9 0.013 4.6E-07 49.6 2.9 24 14-37 3-26 (189)
314 1nn5_A Similar to deoxythymidy 94.8 0.022 7.6E-07 48.8 4.3 26 11-36 8-33 (215)
315 2eyu_A Twitching motility prot 94.8 0.016 5.6E-07 51.8 3.5 27 11-37 24-50 (261)
316 1xjc_A MOBB protein homolog; s 94.8 0.022 7.4E-07 47.3 3.9 26 13-38 5-30 (169)
317 2ghi_A Transport protein; mult 94.8 0.013 4.5E-07 52.3 2.8 23 14-36 48-70 (260)
318 2vp4_A Deoxynucleoside kinase; 94.8 0.014 4.9E-07 51.0 3.0 26 10-35 18-43 (230)
319 2qor_A Guanylate kinase; phosp 94.8 0.016 5.6E-07 49.5 3.3 25 12-36 12-36 (204)
320 2zu0_C Probable ATP-dependent 94.8 0.016 5.4E-07 52.0 3.3 22 14-35 48-69 (267)
321 3tqc_A Pantothenate kinase; bi 94.8 0.021 7.2E-07 52.6 4.2 28 9-36 89-116 (321)
322 2qi9_C Vitamin B12 import ATP- 94.8 0.013 4.6E-07 51.9 2.8 23 14-36 28-50 (249)
323 2olj_A Amino acid ABC transpor 94.8 0.014 4.7E-07 52.3 2.8 23 14-36 52-74 (263)
324 2if2_A Dephospho-COA kinase; a 94.8 0.019 6.3E-07 49.0 3.6 22 13-34 2-23 (204)
325 3t61_A Gluconokinase; PSI-biol 94.8 0.017 5.8E-07 49.2 3.3 25 12-36 18-42 (202)
326 3kb2_A SPBC2 prophage-derived 94.8 0.02 6.8E-07 47.1 3.6 22 14-35 3-24 (173)
327 1vpl_A ABC transporter, ATP-bi 94.8 0.014 4.8E-07 52.1 2.8 23 14-36 43-65 (256)
328 1ex7_A Guanylate kinase; subst 94.7 0.019 6.3E-07 48.5 3.3 22 15-36 4-25 (186)
329 3lw7_A Adenylate kinase relate 94.7 0.018 6E-07 47.4 3.2 20 13-32 2-21 (179)
330 2f1r_A Molybdopterin-guanine d 94.7 0.011 3.7E-07 49.3 1.8 24 14-37 4-27 (171)
331 1cke_A CK, MSSA, protein (cyti 94.7 0.021 7.2E-07 49.5 3.7 23 13-35 6-28 (227)
332 1odf_A YGR205W, hypothetical 3 94.7 0.023 8E-07 51.6 4.1 30 9-38 28-57 (290)
333 2ixe_A Antigen peptide transpo 94.7 0.015 5.2E-07 52.3 2.8 23 14-36 47-69 (271)
334 2yz2_A Putative ABC transporte 94.6 0.015 5.3E-07 52.1 2.8 22 14-35 35-56 (266)
335 2ihy_A ABC transporter, ATP-bi 94.6 0.015 5.3E-07 52.5 2.8 23 14-36 49-71 (279)
336 2nq2_C Hypothetical ABC transp 94.6 0.016 5.5E-07 51.6 2.8 22 14-35 33-54 (253)
337 2bbw_A Adenylate kinase 4, AK4 94.6 0.019 6.6E-07 50.6 3.4 23 12-34 27-49 (246)
338 3uie_A Adenylyl-sulfate kinase 94.6 0.027 9.2E-07 47.9 4.1 28 10-37 23-50 (200)
339 1ly1_A Polynucleotide kinase; 94.6 0.023 7.9E-07 47.1 3.7 22 13-34 3-24 (181)
340 2qt1_A Nicotinamide riboside k 94.6 0.025 8.4E-07 48.4 3.9 26 10-35 19-44 (207)
341 1aky_A Adenylate kinase; ATP:A 94.6 0.024 8.1E-07 49.0 3.8 26 10-35 2-27 (220)
342 2yvu_A Probable adenylyl-sulfa 94.6 0.038 1.3E-06 46.3 5.0 28 10-37 11-38 (186)
343 2b8t_A Thymidine kinase; deoxy 94.6 0.095 3.2E-06 45.5 7.6 29 10-38 10-38 (223)
344 1jjv_A Dephospho-COA kinase; P 94.6 0.022 7.4E-07 48.7 3.5 22 13-34 3-24 (206)
345 1g3q_A MIND ATPase, cell divis 94.5 0.038 1.3E-06 48.2 5.1 67 74-142 111-177 (237)
346 1rz3_A Hypothetical protein rb 94.5 0.037 1.3E-06 47.1 4.9 27 10-36 20-46 (201)
347 1uf9_A TT1252 protein; P-loop, 94.5 0.027 9.3E-07 47.7 4.0 25 11-35 7-31 (203)
348 1sq5_A Pantothenate kinase; P- 94.5 0.028 9.6E-07 51.5 4.2 28 10-37 78-105 (308)
349 2yv5_A YJEQ protein; hydrolase 94.5 0.021 7.2E-07 52.2 3.4 21 13-33 166-186 (302)
350 2rhm_A Putative kinase; P-loop 94.4 0.027 9.1E-07 47.3 3.8 24 12-35 5-28 (193)
351 3fb4_A Adenylate kinase; psych 94.4 0.025 8.5E-07 48.7 3.6 23 13-35 1-23 (216)
352 2jaq_A Deoxyguanosine kinase; 94.4 0.025 8.5E-07 48.0 3.5 23 14-36 2-24 (205)
353 3cm0_A Adenylate kinase; ATP-b 94.4 0.027 9.2E-07 47.1 3.6 24 12-35 4-27 (186)
354 4a74_A DNA repair and recombin 94.4 0.024 8.1E-07 49.1 3.4 23 13-35 26-48 (231)
355 3lnc_A Guanylate kinase, GMP k 94.4 0.014 4.8E-07 51.0 1.8 24 13-36 28-52 (231)
356 2pjz_A Hypothetical protein ST 94.3 0.02 6.7E-07 51.3 2.8 23 14-36 32-54 (263)
357 2bbs_A Cystic fibrosis transme 94.3 0.021 7E-07 51.9 2.9 22 14-35 66-87 (290)
358 3dl0_A Adenylate kinase; phosp 94.3 0.027 9.4E-07 48.4 3.6 23 13-35 1-23 (216)
359 3trf_A Shikimate kinase, SK; a 94.3 0.029 1E-06 46.8 3.7 24 12-35 5-28 (185)
360 3tlx_A Adenylate kinase 2; str 94.3 0.033 1.1E-06 49.1 4.0 26 10-35 27-52 (243)
361 2ehv_A Hypothetical protein PH 94.2 0.024 8.3E-07 49.8 3.1 22 13-34 31-52 (251)
362 1nks_A Adenylate kinase; therm 94.2 0.035 1.2E-06 46.5 4.0 24 14-37 3-26 (194)
363 2wwf_A Thymidilate kinase, put 94.2 0.043 1.5E-06 46.9 4.5 26 11-36 9-34 (212)
364 1ihu_A Arsenical pump-driving 94.2 0.28 9.5E-06 49.1 11.2 42 100-141 199-240 (589)
365 3vaa_A Shikimate kinase, SK; s 94.2 0.034 1.2E-06 47.3 3.8 25 12-36 25-49 (199)
366 3tui_C Methionine import ATP-b 94.1 0.024 8.4E-07 53.1 3.1 23 14-36 56-78 (366)
367 3nh6_A ATP-binding cassette SU 94.1 0.015 5.1E-07 53.3 1.6 23 14-36 82-104 (306)
368 1kht_A Adenylate kinase; phosp 94.1 0.034 1.2E-06 46.5 3.7 25 13-37 4-28 (192)
369 1lw7_A Transcriptional regulat 94.1 0.023 7.9E-07 53.4 2.9 25 12-36 170-194 (365)
370 1zd8_A GTP:AMP phosphotransfer 94.1 0.029 9.9E-07 48.8 3.3 24 12-35 7-30 (227)
371 1u0l_A Probable GTPase ENGC; p 94.1 0.022 7.7E-07 52.0 2.6 23 13-35 170-192 (301)
372 1y63_A LMAJ004144AAA protein; 94.1 0.035 1.2E-06 46.6 3.6 24 12-35 10-33 (184)
373 3jvv_A Twitching mobility prot 94.0 0.038 1.3E-06 51.7 4.1 25 14-38 125-149 (356)
374 2c95_A Adenylate kinase 1; tra 94.0 0.04 1.4E-06 46.4 4.0 25 11-35 8-32 (196)
375 2v54_A DTMP kinase, thymidylat 94.0 0.033 1.1E-06 47.3 3.5 24 12-35 4-27 (204)
376 3fvq_A Fe(3+) IONS import ATP- 94.0 0.029 9.8E-07 52.5 3.2 23 14-36 32-54 (359)
377 1tev_A UMP-CMP kinase; ploop, 94.0 0.037 1.3E-06 46.5 3.7 24 12-35 3-26 (196)
378 2plr_A DTMP kinase, probable t 94.0 0.041 1.4E-06 46.9 4.0 26 12-37 4-29 (213)
379 2gza_A Type IV secretion syste 93.9 0.026 9E-07 53.0 2.9 25 12-36 175-199 (361)
380 3ec2_A DNA replication protein 93.9 0.03 1E-06 46.6 3.0 26 12-37 38-63 (180)
381 1ukz_A Uridylate kinase; trans 93.9 0.047 1.6E-06 46.3 4.2 26 10-35 13-38 (203)
382 2cdn_A Adenylate kinase; phosp 93.9 0.039 1.3E-06 46.8 3.7 26 10-35 18-43 (201)
383 2zr9_A Protein RECA, recombina 93.8 0.27 9.3E-06 45.7 9.6 24 13-36 62-85 (349)
384 1z47_A CYSA, putative ABC-tran 93.8 0.031 1.1E-06 52.2 3.1 23 14-36 43-65 (355)
385 1qhx_A CPT, protein (chloramph 93.8 0.038 1.3E-06 45.7 3.3 23 13-35 4-26 (178)
386 4e22_A Cytidylate kinase; P-lo 93.8 0.037 1.3E-06 49.1 3.4 24 11-34 26-49 (252)
387 2grj_A Dephospho-COA kinase; T 93.8 0.045 1.5E-06 46.4 3.8 26 10-35 10-35 (192)
388 2yyz_A Sugar ABC transporter, 93.8 0.032 1.1E-06 52.2 3.1 23 14-36 31-53 (359)
389 3hr8_A Protein RECA; alpha and 93.7 0.23 7.9E-06 46.3 8.9 24 13-36 62-85 (356)
390 2pt7_A CAG-ALFA; ATPase, prote 93.7 0.024 8.3E-07 52.5 2.1 23 14-36 173-195 (330)
391 2ewv_A Twitching motility prot 93.7 0.039 1.3E-06 52.0 3.5 27 11-37 135-161 (372)
392 2it1_A 362AA long hypothetical 93.7 0.034 1.2E-06 52.1 3.1 23 14-36 31-53 (362)
393 1e4v_A Adenylate kinase; trans 93.7 0.043 1.5E-06 47.1 3.6 23 13-35 1-23 (214)
394 1gtv_A TMK, thymidylate kinase 93.7 0.021 7E-07 49.0 1.5 24 14-37 2-25 (214)
395 3rlf_A Maltose/maltodextrin im 93.6 0.034 1.2E-06 52.4 3.1 23 14-36 31-53 (381)
396 2z0h_A DTMP kinase, thymidylat 93.6 0.05 1.7E-06 45.8 3.9 23 14-36 2-24 (197)
397 2pt5_A Shikimate kinase, SK; a 93.6 0.039 1.3E-06 45.2 3.1 22 14-35 2-23 (168)
398 2kjq_A DNAA-related protein; s 93.6 0.035 1.2E-06 44.9 2.7 26 12-37 36-61 (149)
399 1uj2_A Uridine-cytidine kinase 93.6 0.043 1.5E-06 48.6 3.5 26 10-35 20-45 (252)
400 1vht_A Dephospho-COA kinase; s 93.6 0.045 1.6E-06 47.1 3.6 23 12-34 4-26 (218)
401 1g29_1 MALK, maltose transport 93.6 0.036 1.2E-06 52.2 3.1 23 14-36 31-53 (372)
402 1gvn_B Zeta; postsegregational 93.6 0.049 1.7E-06 49.3 4.0 26 10-35 31-56 (287)
403 2pez_A Bifunctional 3'-phospho 93.5 0.052 1.8E-06 45.1 3.8 26 11-36 4-29 (179)
404 1v43_A Sugar-binding transport 93.5 0.037 1.3E-06 52.1 3.1 23 14-36 39-61 (372)
405 2woo_A ATPase GET3; tail-ancho 93.5 1.6 5.6E-05 40.0 14.3 41 100-140 222-262 (329)
406 1xp8_A RECA protein, recombina 93.5 0.57 2E-05 43.8 11.3 23 14-36 76-98 (366)
407 2p5t_B PEZT; postsegregational 93.5 0.046 1.6E-06 48.4 3.6 27 10-36 30-56 (253)
408 2pbr_A DTMP kinase, thymidylat 93.5 0.043 1.5E-06 46.0 3.2 23 14-36 2-24 (195)
409 1nij_A Hypothetical protein YJ 93.4 0.052 1.8E-06 50.0 3.9 24 12-35 4-27 (318)
410 1via_A Shikimate kinase; struc 93.4 0.045 1.5E-06 45.3 3.1 22 14-35 6-27 (175)
411 1qf9_A UMP/CMP kinase, protein 93.3 0.073 2.5E-06 44.5 4.4 23 13-35 7-29 (194)
412 2bwj_A Adenylate kinase 5; pho 93.2 0.06 2.1E-06 45.3 3.7 24 12-35 12-35 (199)
413 1p9r_A General secretion pathw 93.2 0.05 1.7E-06 52.1 3.5 26 11-36 166-191 (418)
414 3kta_A Chromosome segregation 93.2 0.052 1.8E-06 45.2 3.2 23 14-36 28-50 (182)
415 2f6r_A COA synthase, bifunctio 93.2 0.062 2.1E-06 48.5 4.0 24 10-33 73-96 (281)
416 2oap_1 GSPE-2, type II secreti 93.2 0.037 1.3E-06 54.5 2.6 23 13-35 261-283 (511)
417 3d31_A Sulfate/molybdate ABC t 93.2 0.03 1E-06 52.2 1.9 23 14-36 28-50 (348)
418 1zak_A Adenylate kinase; ATP:A 93.1 0.055 1.9E-06 46.7 3.4 24 12-35 5-28 (222)
419 3iij_A Coilin-interacting nucl 93.1 0.048 1.6E-06 45.3 2.9 24 12-35 11-34 (180)
420 3gd7_A Fusion complex of cysti 93.1 0.05 1.7E-06 51.5 3.2 24 14-37 49-72 (390)
421 1ihu_A Arsenical pump-driving 93.0 1 3.4E-05 45.1 12.9 44 98-141 489-532 (589)
422 3fgn_A Dethiobiotin synthetase 93.0 1.9 6.4E-05 38.0 13.2 66 74-139 126-197 (251)
423 3sr0_A Adenylate kinase; phosp 93.0 0.065 2.2E-06 46.0 3.6 23 13-35 1-23 (206)
424 3r20_A Cytidylate kinase; stru 93.0 0.066 2.3E-06 46.8 3.7 25 11-35 8-32 (233)
425 2vli_A Antibiotic resistance p 93.0 0.039 1.3E-06 45.9 2.1 24 12-35 5-28 (183)
426 1zuh_A Shikimate kinase; alpha 93.0 0.068 2.3E-06 43.8 3.6 23 13-35 8-30 (168)
427 2w0m_A SSO2452; RECA, SSPF, un 92.9 0.072 2.5E-06 45.9 3.9 25 13-37 24-48 (235)
428 1q3t_A Cytidylate kinase; nucl 92.9 0.071 2.4E-06 46.6 3.8 28 8-35 12-39 (236)
429 3io5_A Recombination and repai 92.9 0.77 2.6E-05 42.0 10.6 23 14-36 30-52 (333)
430 2xb4_A Adenylate kinase; ATP-b 92.8 0.065 2.2E-06 46.4 3.5 22 14-35 2-23 (223)
431 2npi_A Protein CLP1; CLP1-PCF1 92.8 0.058 2E-06 52.3 3.4 25 13-37 139-163 (460)
432 1oxx_K GLCV, glucose, ABC tran 92.8 0.031 1E-06 52.3 1.3 23 14-36 33-55 (353)
433 3qxc_A Dethiobiotin synthetase 92.8 0.63 2.2E-05 40.8 9.7 83 74-159 131-218 (242)
434 2obl_A ESCN; ATPase, hydrolase 92.7 0.068 2.3E-06 49.8 3.6 22 14-35 73-94 (347)
435 3of5_A Dethiobiotin synthetase 92.7 0.6 2E-05 40.5 9.5 69 73-141 109-182 (228)
436 3be4_A Adenylate kinase; malar 92.7 0.068 2.3E-06 46.1 3.3 23 13-35 6-28 (217)
437 1a7j_A Phosphoribulokinase; tr 92.6 0.044 1.5E-06 49.7 2.0 26 11-36 4-29 (290)
438 1ak2_A Adenylate kinase isoenz 92.5 0.09 3.1E-06 45.8 4.0 25 11-35 15-39 (233)
439 1m7g_A Adenylylsulfate kinase; 92.5 0.096 3.3E-06 44.8 4.1 27 11-37 24-50 (211)
440 2ze6_A Isopentenyl transferase 92.5 0.075 2.6E-06 47.1 3.4 23 14-36 3-25 (253)
441 1e6c_A Shikimate kinase; phosp 92.5 0.066 2.3E-06 44.0 2.9 22 14-35 4-25 (173)
442 1wcv_1 SOJ, segregation protei 92.5 0.39 1.3E-05 42.3 8.1 68 73-142 110-183 (257)
443 3a4m_A L-seryl-tRNA(SEC) kinas 92.5 0.078 2.7E-06 47.2 3.5 24 13-36 5-28 (260)
444 3d3q_A TRNA delta(2)-isopenten 92.4 0.089 3E-06 48.7 3.9 24 13-36 8-31 (340)
445 4eaq_A DTMP kinase, thymidylat 92.4 0.12 4E-06 45.1 4.5 28 11-38 25-52 (229)
446 3io3_A DEHA2D07832P; chaperone 92.3 4.7 0.00016 37.3 15.6 42 100-141 232-273 (348)
447 1yqt_A RNAse L inhibitor; ATP- 92.3 0.072 2.5E-06 52.8 3.3 24 13-36 48-71 (538)
448 3euj_A Chromosome partition pr 92.3 0.073 2.5E-06 51.8 3.2 24 13-36 30-53 (483)
449 1f2t_A RAD50 ABC-ATPase; DNA d 92.3 0.083 2.8E-06 42.7 3.1 22 15-36 26-47 (149)
450 4a1f_A DNAB helicase, replicat 92.3 0.21 7.3E-06 46.2 6.3 24 14-37 48-71 (338)
451 3umf_A Adenylate kinase; rossm 92.3 0.12 4E-06 44.7 4.2 24 12-35 29-52 (217)
452 2iyv_A Shikimate kinase, SK; t 92.3 0.09 3.1E-06 43.8 3.5 22 14-35 4-25 (184)
453 3nwj_A ATSK2; P loop, shikimat 92.0 0.083 2.9E-06 46.8 3.1 23 13-35 49-71 (250)
454 1cr0_A DNA primase/helicase; R 91.8 0.095 3.2E-06 47.5 3.4 24 14-37 37-60 (296)
455 3gmt_A Adenylate kinase; ssgci 91.8 0.11 3.9E-06 45.2 3.7 25 11-35 7-31 (230)
456 3ozx_A RNAse L inhibitor; ATP 91.8 0.07 2.4E-06 52.8 2.6 24 13-36 26-49 (538)
457 3b60_A Lipid A export ATP-bind 91.8 0.077 2.6E-06 53.2 2.9 23 14-36 371-393 (582)
458 2dpy_A FLII, flagellum-specifi 91.7 0.1 3.5E-06 50.2 3.6 22 14-35 159-180 (438)
459 2x8a_A Nuclear valosin-contain 91.7 0.096 3.3E-06 47.0 3.2 22 14-35 46-67 (274)
460 2axn_A 6-phosphofructo-2-kinas 91.7 0.45 1.5E-05 46.8 8.2 26 11-36 34-59 (520)
461 3b5x_A Lipid A export ATP-bind 91.7 0.084 2.9E-06 52.9 3.0 23 14-36 371-393 (582)
462 3j16_B RLI1P; ribosome recycli 91.6 0.088 3E-06 52.9 3.1 23 14-36 105-127 (608)
463 1ixz_A ATP-dependent metallopr 91.5 0.11 3.6E-06 45.9 3.2 22 14-35 51-72 (254)
464 1yqt_A RNAse L inhibitor; ATP- 91.3 0.11 3.6E-06 51.6 3.3 23 14-36 314-336 (538)
465 2cvh_A DNA repair and recombin 91.3 0.12 4.1E-06 44.2 3.3 22 13-34 21-42 (220)
466 3tqf_A HPR(Ser) kinase; transf 91.3 0.14 4.7E-06 42.4 3.4 22 13-34 17-38 (181)
467 3iqw_A Tail-anchored protein t 91.3 8.7 0.0003 35.2 18.0 41 100-140 223-263 (334)
468 3foz_A TRNA delta(2)-isopenten 91.2 0.17 5.7E-06 46.2 4.1 27 10-36 8-34 (316)
469 3ake_A Cytidylate kinase; CMP 91.1 0.15 5.1E-06 43.2 3.7 22 14-35 4-25 (208)
470 1n0w_A DNA repair protein RAD5 91.1 0.13 4.3E-06 44.8 3.2 23 13-35 25-47 (243)
471 2yl4_A ATP-binding cassette SU 91.1 0.08 2.7E-06 53.2 2.2 23 14-36 372-394 (595)
472 3qf7_A RAD50; ABC-ATPase, ATPa 91.1 0.11 3.9E-06 48.6 3.1 24 12-36 24-47 (365)
473 1svm_A Large T antigen; AAA+ f 91.1 0.14 4.9E-06 48.2 3.8 25 11-35 168-192 (377)
474 2chg_A Replication factor C sm 91.1 1.7 5.9E-05 36.4 10.6 23 14-36 40-62 (226)
475 3bk7_A ABC transporter ATP-bin 91.1 0.099 3.4E-06 52.6 2.8 24 13-36 118-141 (607)
476 3bh0_A DNAB-like replicative h 91.0 1.4 4.9E-05 40.1 10.5 23 14-36 70-92 (315)
477 3qf4_B Uncharacterized ABC tra 91.0 0.087 3E-06 53.0 2.3 24 13-36 382-405 (598)
478 1u94_A RECA protein, recombina 91.0 0.73 2.5E-05 42.9 8.5 24 13-36 64-87 (356)
479 3bk7_A ABC transporter ATP-bin 90.9 0.12 4.2E-06 51.9 3.3 23 14-36 384-406 (607)
480 3pfi_A Holliday junction ATP-d 90.9 1.3 4.4E-05 40.5 10.1 26 10-35 53-78 (338)
481 3ozx_A RNAse L inhibitor; ATP 90.8 0.11 3.7E-06 51.5 2.8 23 14-36 296-318 (538)
482 1iy2_A ATP-dependent metallopr 90.8 0.14 4.7E-06 45.9 3.2 22 14-35 75-96 (278)
483 1ltq_A Polynucleotide kinase; 90.8 0.16 5.3E-06 46.0 3.7 22 13-34 3-24 (301)
484 1jbk_A CLPB protein; beta barr 90.6 0.19 6.3E-06 41.5 3.8 26 11-36 42-67 (195)
485 1p5z_B DCK, deoxycytidine kina 90.5 0.096 3.3E-06 46.6 2.0 26 10-35 22-47 (263)
486 4a82_A Cystic fibrosis transme 90.5 0.075 2.6E-06 53.2 1.3 22 14-35 369-390 (578)
487 1in4_A RUVB, holliday junction 90.4 0.15 5.2E-06 47.1 3.3 24 13-36 52-75 (334)
488 3j16_B RLI1P; ribosome recycli 90.4 0.14 4.9E-06 51.3 3.3 23 14-36 380-402 (608)
489 1nlf_A Regulatory protein REPA 90.3 0.17 5.7E-06 45.4 3.4 24 13-36 31-54 (279)
490 3qf4_A ABC transporter, ATP-bi 90.3 0.094 3.2E-06 52.6 1.8 23 14-36 371-393 (587)
491 2ocp_A DGK, deoxyguanosine kin 90.2 0.22 7.4E-06 43.5 4.0 24 13-36 3-26 (241)
492 4edh_A DTMP kinase, thymidylat 90.2 0.24 8.3E-06 42.5 4.2 28 11-38 5-32 (213)
493 2w58_A DNAI, primosome compone 90.1 0.22 7.6E-06 42.0 3.9 24 13-36 55-78 (202)
494 4he6_A Peptidase family U32; u 90.1 0.43 1.5E-05 34.7 4.8 58 235-296 26-86 (89)
495 2xtz_A Guanine nucleotide-bind 89.9 0.21 7.1E-06 46.6 3.7 27 7-33 4-30 (354)
496 1lv7_A FTSH; alpha/beta domain 89.8 0.22 7.5E-06 43.9 3.7 24 12-35 45-68 (257)
497 2qmh_A HPR kinase/phosphorylas 89.8 0.18 6.1E-06 42.8 2.9 23 13-35 35-57 (205)
498 3bgw_A DNAB-like replicative h 89.7 0.72 2.5E-05 44.4 7.5 25 14-38 199-223 (444)
499 2dr3_A UPF0273 protein PH0284; 89.6 0.26 9E-06 42.8 4.0 24 13-36 24-47 (247)
500 1q57_A DNA primase/helicase; d 89.6 0.42 1.4E-05 46.8 5.8 23 14-36 244-266 (503)
No 1
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=4.5e-71 Score=536.19 Aligned_cols=385 Identities=57% Similarity=0.967 Sum_probs=346.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
|+++||+++||+|+|||||+++|++...+.+...+..++.+|.+++|+++|+|++..+..++.+++.++|||||||++|.
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH
Confidence 46899999999999999999999987655544433334457888999999999999988888888999999999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 169 (396)
++|..+++.+|++|+|+|++++.+.|+++|+.++..+++|++|+++||||+.+.++.++.+..+++++++.+++.++.+|
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETP 160 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCc
Confidence 99999999999999999999999999999999999999998777899999986445566677788999998888666789
Q ss_pred EEEecccccccCC-CCCCCCCc-HHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEE
Q psy15217 170 IIKGSAKLALEGD-TGPLGEQS-ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEI 247 (396)
Q Consensus 170 ~i~~Sa~~g~~~~-~~~~~~~~-~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~ 247 (396)
++++||++|.|.. ++||. + +.+|+++|.+.+|.|.++.++|++++|+++|.++++|+|++|+|.+|+|++||.|.+
T Consensus 161 ~i~~SA~~g~n~~~~~~~~--g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~ 238 (397)
T 1d2e_A 161 IIVGSALCALEQRDPELGL--KSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEF 238 (397)
T ss_dssp EEECCHHHHHTTCCTTTTH--HHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEE
T ss_pred EEEeehhhcccccCCCccC--CcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEE
Confidence 9999999987644 46873 5 899999999999988888899999999999999999999999999999999999999
Q ss_pred eecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCCCceeEEEEEEEEeecCCCCCCccccc
Q psy15217 248 IGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFS 327 (396)
Q Consensus 248 ~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~ 327 (396)
.|.+.+.+++|++|+++++++++|.|||+|++.|+|++..++++||+|++++++.+++.|+|++.||+++++++++++.+
T Consensus 239 ~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~ 318 (397)
T 1d2e_A 239 LGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVS 318 (397)
T ss_dssp EETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEESTTSCCCEEEEEEEEEECCGGGTSCSSCBCT
T ss_pred eCCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeCCCCCCcccEEEEEEEEeccccccCccccCC
Confidence 88643478899999999999999999999999999999999999999999888888999999999999876666679999
Q ss_pred CceeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEEEeCCcEEEEEEEeeecC
Q psy15217 328 NYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 328 g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~~~t~~~G~i~~v~~ 396 (396)
||+|++|+++.+++|++.+..+++++++||.+.|+|+|.+|+|+++|+||+||++|+|+|+|+|+++.+
T Consensus 319 g~~~~~~~~t~~~~~~i~l~~~~~~l~~~~~~~v~~~~~~p~~~~~~~r~~lr~~~~ti~~G~i~~~~~ 387 (397)
T 1d2e_A 319 HFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPA 387 (397)
T ss_dssp TCCCEEEETTEEEEEEEECCSSCCCBCTTCEEEEEEEEEEEECCCTTCEEEEEETTEEEEEEEEEECCC
T ss_pred CCEEEEEEecCEEEEEEEEcCCcccccCCCEEEEEEEECCeEEEccCCeEEEEeCCeEEEEEEEeeccc
Confidence 999999999999999998666678999999999999999999999999999999999999999998753
No 2
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=9.2e-71 Score=535.89 Aligned_cols=391 Identities=72% Similarity=1.160 Sum_probs=345.7
Q ss_pred ccccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcC-CccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEec
Q psy15217 4 SKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFG-GEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDC 82 (396)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDt 82 (396)
..+...++.++|+++||+|+|||||+++|++...+.+. ..+..++.+|..++|+++|+|++.....++..+..+.||||
T Consensus 3 ~~~~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDt 82 (405)
T 2c78_A 3 GEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDC 82 (405)
T ss_dssp ------CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEEC
T ss_pred ccccCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEEC
Confidence 45667788999999999999999999999986555432 22333446899999999999999988888888899999999
Q ss_pred CChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 83 PGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 83 pG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
|||++|.++|..+++.+|++|+|+|++++.+.|+++|+..+..+++|++++++||+|+.+.++.++.+..++.++++.++
T Consensus 83 pG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 83 PGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp CCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999877789999998644555666678888999888
Q ss_pred CCCCCCeEEEeccccccc----------CCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEE
Q psy15217 163 FPGNDIPIIKGSAKLALE----------GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~----------~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g 232 (396)
+.+...|++++||++|.+ +..+|| .++.+|+++|.+++|.|.++.+.|++++|+++|+++++|++++|
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~--~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g 240 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWV--DKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHH--HHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEE
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCccc--ccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEE
Confidence 765678999999999876 445676 35899999999999988888899999999999999999999999
Q ss_pred EEEeeEEecCCEEEEeecCC-ceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCCCceeEEEEEE
Q psy15217 233 RVERGIVRVGEELEIIGIKD-TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEI 311 (396)
Q Consensus 233 ~v~~G~l~~g~~v~~~p~~~-~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v 311 (396)
+|.+|+|++||.|.+.|.+. ..+++|++|++++.++++|.|||+|++.|+|++..++++||+|++++++.+++.|+|++
T Consensus 241 ~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~~~~~~~~f~a~v 320 (405)
T 2c78_A 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASV 320 (405)
T ss_dssp ECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTTCEEESTTSSEEEEEEEEEE
T ss_pred EEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCCCCceeEEEEEEE
Confidence 99999999999999998642 26789999999999999999999999999999999999999999998777889999999
Q ss_pred EEeecCCCCCCcccccCceeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEEEeCCcEEEEEEE
Q psy15217 312 YALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVV 391 (396)
Q Consensus 312 ~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~~~t~~~G~i 391 (396)
.||+++.++++++|.+||+|++|+++.+++|++.+..+++.+++||.+.|+|+|.+|+|+++|+||+||++|+|+|+|+|
T Consensus 321 ~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~~~~~~v~~~~~~p~~~~~~~rf~lr~~~~ti~~G~i 400 (405)
T 2c78_A 321 YVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVV 400 (405)
T ss_dssp EECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEECCTTCCCBCTTCEEEEEEEEEEEEEECTTCEEEEEETTEEEEEEEE
T ss_pred EEecccCCCccccccCCceEEEEEcccEEEEEEEEccCccccCCCCEEEEEEEECceEEEccCCEEEEEcCCeEEEEEEE
Confidence 99998755566799999999999999999999986666778999999999999999999999999999999999999999
Q ss_pred eeecC
Q psy15217 392 VKIIE 396 (396)
Q Consensus 392 ~~v~~ 396 (396)
+++++
T Consensus 401 ~~~~~ 405 (405)
T 2c78_A 401 TKILE 405 (405)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 99875
No 3
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=4.8e-69 Score=527.31 Aligned_cols=377 Identities=28% Similarity=0.420 Sum_probs=330.6
Q ss_pred cCCCCeeEEEEEeCCCCChHHHHHHHHhhhh---------------hhcCCccccccccCCChhHhhcCceEEeeeeEEe
Q psy15217 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71 (396)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~ 71 (396)
...++++||+++||+|+|||||+++|++... +.+.+.+...+.+|..++|+++|+|++..+..++
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 3457889999999999999999999975421 1233444556789999999999999999999999
Q ss_pred eCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCC-------hhHHHHHHHHHHcCCCeEEEEEeccCCCC--
Q psy15217 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMVD-- 142 (396)
Q Consensus 72 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~D~~~-- 142 (396)
++++.++|||||||++|.++|..+++.+|++|||||+++|.+ +|+++|+.++..+++|++|+++||||+.+
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 171 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence 999999999999999999999999999999999999999886 79999999999999998888899999964
Q ss_pred H-HHHHHHHHHHHHHHHhhcCCCCC-CCeEEEecccccccCC-----CCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeE
Q psy15217 143 D-EELLELVEIEIRELLNKYEFPGN-DIPIIKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLL 215 (396)
Q Consensus 143 ~-~~~~~~i~~~~~~~l~~~~~~~~-~~~~i~~Sa~~g~~~~-----~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~ 215 (396)
+ ++.++.+.+++..+++.+++... .+|++++||++|.+.. .+||.+. .|++.|.. +|+|.+..++|+++
T Consensus 172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~---~L~~~l~~-i~~~~~~~~~p~r~ 247 (439)
T 3j2k_7 172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGL---PFIPYLDN-LPNFNRSVDGPIRL 247 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCch---HHHHHHHh-CCCCccCCCCCeEE
Confidence 2 45567777889999999888542 6899999999998743 4799764 56666655 67777888999999
Q ss_pred EEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEE
Q psy15217 216 PVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVL 295 (396)
Q Consensus 216 ~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl 295 (396)
+|+++|+ +.|++++|+|++|.|++||.|.++|.+ .+++|++|+++++++++|.|||+|+++|+|++..+++|||+|
T Consensus 248 ~v~~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~--~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl 323 (439)
T 3j2k_7 248 PIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNK--HNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFIL 323 (439)
T ss_pred EEEEEEc--CCCeEEEEEEEeeEEecCCEEEEccCC--ceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEe
Confidence 9999986 789999999999999999999999854 678999999999999999999999999999999999999999
Q ss_pred ecCCCC-CceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEc-------------cCCcccccCCCEEEE
Q psy15217 296 AKPGSI-KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIEL-------------PKNKEMVMPGDNVLI 361 (396)
Q Consensus 296 ~~~~~~-~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~-------------~~~~~~l~~g~~~~v 361 (396)
++++++ +.++.|+|++.||+|+ .+|.+||+|++||++.++.|++.- ..++++|+.||.+.|
T Consensus 324 ~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v 398 (439)
T 3j2k_7 324 CDPSNLCHSGRTFDVQIVIIEHK-----SIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIA 398 (439)
T ss_pred cCCCCCCceeeEEEEEEEEeCCC-----CcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEE
Confidence 998865 4568999999999986 479999999999999999998752 134568999999999
Q ss_pred EEEecceeecccC------CeEEEEeCCcEEEEEEEeeecC
Q psy15217 362 TVRLINPIAMEEG------LRFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 362 ~~~~~~p~~~~~~------~r~~lr~~~~t~~~G~i~~v~~ 396 (396)
++++.+|+|+++| +||+|||+|+|+|+|+|++|+|
T Consensus 399 ~~~~~~p~~~e~~~~~~~~g~f~l~d~~~tv~~G~i~~v~~ 439 (439)
T 3j2k_7 399 RLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVQ 439 (439)
T ss_pred EEEeCCeEEEeeccccccCCCEEEEECCceEEEEEEEEecC
Confidence 9999999999987 6999999999999999999975
No 4
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=5.9e-68 Score=552.15 Aligned_cols=393 Identities=77% Similarity=1.256 Sum_probs=334.7
Q ss_pred CcccccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEe
Q psy15217 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVD 81 (396)
Q Consensus 2 ~~~~~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiD 81 (396)
.+..+.+.++.++|+++||+|+|||||+++|++...+.+...+..++.+|.+++|+++|+|++.....++..++.++|||
T Consensus 286 ~k~~~~~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IID 365 (1289)
T 3avx_A 286 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVD 365 (1289)
T ss_dssp C---CCCCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEE
T ss_pred hhhhhhccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEE
Confidence 33445567889999999999999999999999865555433333344688999999999999998888988889999999
Q ss_pred cCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 82 CPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 82 tpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
||||++|.++|..+++.+|++|||||+++|.+.|+++|+.++..+++|++||++||||+.+.++.++.+..++.++++.+
T Consensus 366 TPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~ 445 (1289)
T 3avx_A 366 CPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQY 445 (1289)
T ss_dssp CCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999987778999999865455666777889999998
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEec
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~ 241 (396)
++.+..+|++++||++|.++..+|| .++.+|+++|.+.+|.|.++.+.|++++|+++|+++++|+|++|+|.+|+|++
T Consensus 446 G~~~~~vp~IpvSAktG~ng~~~w~--eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkv 523 (1289)
T 3avx_A 446 DFPGDDTPIVRGSALKALEGDAEWE--AKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 523 (1289)
T ss_dssp TSCTTTCCEEECCSTTTTTCCHHHH--HHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEET
T ss_pred cccccceeEEEEEeccCCCCCcccc--ccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEec
Confidence 8866678999999999876655676 47999999999999988888899999999999999999999999999999999
Q ss_pred CCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCCCceeEEEEEEEEeecCCCCC
Q psy15217 242 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGR 321 (396)
Q Consensus 242 g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~ 321 (396)
||.|.+.|.+...+++|++|++++.++++|.|||+|++.|+|++..++++||+|++++++.+++.|+|++.||+++++++
T Consensus 524 GD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~~~~~~~F~A~V~~L~~~egg~ 603 (1289)
T 3avx_A 524 GEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGR 603 (1289)
T ss_dssp TCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEESTTSCCEEEEEEEEEEECCGGGTSC
T ss_pred CCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEecCCCCccceeEEEEEEEEccccccc
Confidence 99999998654467899999999999999999999999999999999999999999988888999999999999765556
Q ss_pred CcccccCceeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCCeEEEEeCCcEEEEEEEeeecC
Q psy15217 322 HTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 322 ~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~~~t~~~G~i~~v~~ 396 (396)
++++..||+|++|+++.+++|++.+..+++.+++||.+.|+|+|.+|+|+++|+||+||++|+|+|+|+|+++.+
T Consensus 604 ~~pi~~G~~p~l~igT~~vtg~I~L~~~~~~L~~Gd~a~V~L~l~~Pi~ve~g~RFiLRd~grTIG~G~V~~v~~ 678 (1289)
T 3avx_A 604 HTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 678 (1289)
T ss_dssp SSCBCTTCCCEEECSSCEEEEEEECCTTCCCBCTTCCCEEEEEEEEEEECCTTCEEEEEETTEEEEEEEEEEECC
T ss_pred cccccCCCceEEEEeeeeEEEEEEECCCcccccCCCEEEEEEEECceEEEccCCEEEEEeCCeEEEEEEEeeech
Confidence 678999999999999999999998666678899999999999999999999999999999999999999998753
No 5
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=3.5e-67 Score=516.76 Aligned_cols=380 Identities=32% Similarity=0.454 Sum_probs=331.0
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhh---------------hhhcCCccccccccCCChhHhhcCceEEeeeeEEee
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVL---------------SKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~---------------~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 72 (396)
.++++++|+++||+|+|||||+++|++.. .+.+.+.....+.+|....|+++|+|++..+..+++
T Consensus 3 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~ 82 (458)
T 1f60_A 3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (458)
T ss_dssp CCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec
Confidence 34678999999999999999999998652 122333333345678899999999999999999999
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCCh-------hHHHHHHHHHHcCCCeEEEEEeccCCCCH-H
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMVDD-E 144 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~-------qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~ 144 (396)
+++.++|||||||++|.++|..+++.+|++|||+|++++.++ |+++|+.++..+++|++||++||||+.++ +
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCH
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCH
Confidence 999999999999999999999999999999999999987665 99999999999999988888999999853 3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCC-----CCCCCCC---------cHHHHHHHhhhhCCCCCCCCC
Q psy15217 145 ELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGD-----TGPLGEQ---------SILSLSKALDTYIPTPNRAID 210 (396)
Q Consensus 145 ~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~-----~~~~~~~---------~~~~Ll~~l~~~l~~~~~~~~ 210 (396)
+.++.+..++.++++.+++....+|++++||++|.+.. .+||.+- ....|+++|.. +++|.+..+
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~~p~~~~~ 241 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSRPTD 241 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cCCCcccCC
Confidence 55666777889999888875446899999999997732 4798621 02467788776 677888889
Q ss_pred CceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCC
Q psy15217 211 GAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVE 290 (396)
Q Consensus 211 ~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~ 290 (396)
.|++|+|+++|++++.|+|++|+|++|.+++||+|.+.|. ...++|++|+.+++++++|.|||+|++.|+|++..+++
T Consensus 242 ~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~--~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i~ 319 (458)
T 1f60_A 242 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPA--GVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIR 319 (458)
T ss_dssp SCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETT--TEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSC
T ss_pred CCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCC--CceEEEeEEEECCeEEEEEcCCCEEEEEEcCCcccccC
Confidence 9999999999999999999999999999999999999985 37889999999999999999999999999999889999
Q ss_pred CCeEEecCC--CCCceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEcc-------------CCcccccC
Q psy15217 291 RGQVLAKPG--SIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMP 355 (396)
Q Consensus 291 ~G~vl~~~~--~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~ 355 (396)
+|++|++++ ++.++++|+|++.||+++ ++|.+||+|++|+|+.+++|++... +++++|++
T Consensus 320 rG~vl~~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~ 394 (458)
T 1f60_A 320 RGNVCGDAKNDPPKGCASFNATVIVLNHP-----GQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKS 394 (458)
T ss_dssp TTCEEEETTSSCCCCCSEEEEEEEECSCS-----CCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCT
T ss_pred ceeEEecCCCCCCceeeEEEEEEEEeCCC-----CCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCC
Confidence 999999986 456789999999999876 5899999999999999999998632 23668999
Q ss_pred CCEEEEEEEecceeecccCC------eEEEEeCCcEEEEEEEeeec
Q psy15217 356 GDNVLITVRLINPIAMEEGL------RFAIREGGRTVGAGVVVKII 395 (396)
Q Consensus 356 g~~~~v~~~~~~p~~~~~~~------r~~lr~~~~t~~~G~i~~v~ 395 (396)
||.+.|+|+|.+|+|+++|+ ||+|||+|+|+|+|+|+++.
T Consensus 395 g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~ 440 (458)
T 1f60_A 395 GDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVD 440 (458)
T ss_dssp TCEEEEEEEESSCCCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEE
T ss_pred CCEEEEEEEECCeEEEecCccCCCCCcEEEEECCeEEEEEEEEeec
Confidence 99999999999999999996 99999999999999999875
No 6
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=6.1e-66 Score=505.68 Aligned_cols=377 Identities=34% Similarity=0.560 Sum_probs=318.7
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhh---------------hhcCCccccccccCCChhHhhcCceEEeeeeEEeeC
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK 73 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~ 73 (396)
.++.++|+++||+|+|||||+++|++... +.+.+.....+.+|..++|+++|+|++.....+++.
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 45789999999999999999999986521 122233333356899999999999999999899999
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCC-------CChhHHHHHHHHHHcCCCeEEEEEeccCCCC--H-
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-------PMPQTREHILLARQVGVPYIVVFLNKADMVD--D- 143 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g-------~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~--~- 143 (396)
++.++|||||||++|.++|..+++.+|++|+|+|++++ ..+|+++|+.++..+++|++|+++||||+.+ +
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 99999999999999999999999999999999999998 7789999999999999987888899999987 2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCC-----CCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEE
Q psy15217 144 EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVE 218 (396)
Q Consensus 144 ~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~-----~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~ 218 (396)
++.++.+.++++++++.+++....++++++||++|.+-. .+||.+. .|+++|.. +++|.+..++|++++|+
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~---~Ll~~l~~-~~~p~~~~~~~~~~~v~ 238 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGP---TLEEYLDQ-LELPPKPVDKPLRIPIQ 238 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSC---CHHHHHTT-CCCCCCGGGSCCBEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccch---hHHHHHhc-cCCCCCCCCCCeEEEEE
Confidence 355667777899999998886556899999999987632 4788764 67777766 56677777899999999
Q ss_pred EEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecC
Q psy15217 219 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKP 298 (396)
Q Consensus 219 ~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~ 298 (396)
++|++++.|++++|+|.+|+|++||.|.+.|. +...+|++|+++++++++|.|||+|+++|+|++..++++||+|+++
T Consensus 239 ~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~--~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~ 316 (435)
T 1jny_A 239 DVYSISGVGTVPVGRVESGVLKVGDKIVFMPA--GKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHP 316 (435)
T ss_dssp EEEEETTTEEEEEEECCBSCEETTCEEEEETT--TEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECT
T ss_pred EEEEeCCCcEEEEEEEecCeEEcCCEEEECCc--eeEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCC
Confidence 99999999999999999999999999999975 4788999999999999999999999999999988999999999998
Q ss_pred C-CCCceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEcc-------------CCcccccCCCEEEEEEE
Q psy15217 299 G-SIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVR 364 (396)
Q Consensus 299 ~-~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~g~~~~v~~~ 364 (396)
+ ++..+..|+|++.||+++ ++|.+||++++|+|+.+++|++... +++..|++||.+.|+|+
T Consensus 317 ~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~ 391 (435)
T 1jny_A 317 NNPPTVADEFTARIIVVWHP-----TALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFK 391 (435)
T ss_dssp TSCCCEESEEEEEEEECCCS-----SCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEE
T ss_pred CCCceEeEEEEEEEEEECCC-----CcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEE
Confidence 7 456689999999999875 5899999999999999999998632 23568999999999999
Q ss_pred ecceeecccCC------eEEEEeCCcEEEEEEEeeecC
Q psy15217 365 LINPIAMEEGL------RFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 365 ~~~p~~~~~~~------r~~lr~~~~t~~~G~i~~v~~ 396 (396)
+.+|+|+++|. ||+||++|+|+|+|+|+++.+
T Consensus 392 ~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~i~~~~~ 429 (435)
T 1jny_A 392 PIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVKP 429 (435)
T ss_dssp ESSCEECCCTTTSGGGTEEEEEETTEEEEEEEEEEEEC
T ss_pred ECceEEEecCCcCCcCccEEEEECCeEEEEEEEeeecC
Confidence 99999999986 999999999999999998753
No 7
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=6.3e-66 Score=512.04 Aligned_cols=380 Identities=24% Similarity=0.336 Sum_probs=318.8
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhh---------------hhcCCccccccccCCChhHhhcCceEEeeeeEEeeC
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK 73 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~ 73 (396)
.++++||+++|++|+|||||+++|++... ..+.+.....+.+|....|+++|+|++.....+++.
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 46789999999999999999999986521 122334445677999999999999999999999999
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCC-------CChhHHHHHHHHHHcCCCeEEEEEeccCCCCH-HH
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-------PMPQTREHILLARQVGVPYIVVFLNKADMVDD-EE 145 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g-------~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~~ 145 (396)
+..+.|||||||++|.+++..+++.+|++|||+|++++ ...|+++|+.++..++++++||++||||+.++ +.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH
Confidence 99999999999999999999999999999999999997 56899999999999999888889999999874 45
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCC--------CCCCCCCcHHHHHHHhhhhCCC--CCCCCCCceeE
Q psy15217 146 LLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGD--------TGPLGEQSILSLSKALDTYIPT--PNRAIDGAFLL 215 (396)
Q Consensus 146 ~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~--------~~~~~~~~~~~Ll~~l~~~l~~--~~~~~~~~~~~ 215 (396)
.++.+..++..+++.+++....++++++||++|.+.. .+||.++.+.++++.+...+|. |.+..+.|++|
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~ 269 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLF 269 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEE
Confidence 6677777888999888886567899999999998754 4799998899999888766654 66778899999
Q ss_pred EEEEEEeeC---CCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecc--------eeeCeeecCCeEEEEeccc
Q psy15217 216 PVEDVFSIS---GRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR--------KLLDQGQAGDNIGLLLRGT 284 (396)
Q Consensus 216 ~i~~~~~~~---~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~--------~~~~~a~~G~~v~l~l~~~ 284 (396)
+|+++|+++ +.|+|++|+|++|.|++||.|.++|.+ ..++|++|++++ .++++|.|||+|+++|+++
T Consensus 270 ~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~ 347 (483)
T 3p26_A 270 SVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSE--QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKA 347 (483)
T ss_dssp EEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTT--EEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESC
T ss_pred EEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCC--CeEEEEEEEEcCccccccccccccEECCCCEEEEEEEec
Confidence 999999987 589999999999999999999999854 678999999994 8999999999999999999
Q ss_pred CccCCCCCeEEecCCC--CCceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEcc------------CCc
Q psy15217 285 KREDVERGQVLAKPGS--IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP------------KNK 350 (396)
Q Consensus 285 ~~~~i~~G~vl~~~~~--~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~ 350 (396)
+..++++||+|+++++ +.+++.|+|++.||+++ .+|.+||++++|+|+.++.|++... +++
T Consensus 348 ~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~~~~~ 422 (483)
T 3p26_A 348 YPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKI 422 (483)
T ss_dssp CGGGCCTTCEEECTTCCCCEECSEEEEEEEECSCS-----SCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEECCSCC
T ss_pred ccccCCceEEEEcCCCCCCceeeEEEEEEEEECCC-----CCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCcccccCc
Confidence 8899999999999876 56679999999999876 5899999999999999999988632 345
Q ss_pred ccccCCCEEEEEEEe---cceeecccC------CeEEEEeCCcEEEEEEEeeec
Q psy15217 351 EMVMPGDNVLITVRL---INPIAMEEG------LRFAIREGGRTVGAGVVVKII 395 (396)
Q Consensus 351 ~~l~~g~~~~v~~~~---~~p~~~~~~------~r~~lr~~~~t~~~G~i~~v~ 395 (396)
++|++||.+.|+|++ .+|+|++.+ +||+||++|+|+|+|+|+++-
T Consensus 423 ~~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~~~ 476 (483)
T 3p26_A 423 RHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEIT 476 (483)
T ss_dssp SCBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEEEC
T ss_pred cCcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeCCCEEEEEEEEEec
Confidence 689999999999999 789999975 799999999999999999864
No 8
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-66 Score=526.64 Aligned_cols=376 Identities=27% Similarity=0.381 Sum_probs=291.2
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhh---------------hhcCCccccccccCCChhHhhcCceEEeeeeEEee
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 72 (396)
..++++||+++||+|+|||||+++|++... ..+.+.+...+.+|..++|+++|+|++.....+++
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 457889999999999999999999986432 12233444567899999999999999999999999
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCC-------ChhHHHHHHHHHHcCCCeEEEEEeccCCCCH-H
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-------MPQTREHILLARQVGVPYIVVFLNKADMVDD-E 144 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~-------~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~ 144 (396)
+++.++|||||||++|.++|..+++.+|++|||||+++|. .+||++|+.++..+++|++|||+||||++++ +
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccH
Confidence 8999999999999999999999999999999999999864 8999999999999999988888999999874 4
Q ss_pred HHHHHHHHHHHHHH-hhcCCCCCCCeEEEecccccccCC-------CCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEE
Q psy15217 145 ELLELVEIEIRELL-NKYEFPGNDIPIIKGSAKLALEGD-------TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLP 216 (396)
Q Consensus 145 ~~~~~i~~~~~~~l-~~~~~~~~~~~~i~~Sa~~g~~~~-------~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~ 216 (396)
+.++.+..++..++ +.+++....+|++++||++|.+.. .+||.+. +|+++|...+| |.+..+.|++++
T Consensus 333 ~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~---~Lle~l~~~~p-p~~~~~~p~r~~ 408 (592)
T 3mca_A 333 DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGP---TLLSALDQLVP-PEKPYRKPLRLS 408 (592)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSC---CHHHHHHTSCC-CSCTTTSCCEEE
T ss_pred HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchH---HHHHHHHhhcc-ccccccccchhe
Confidence 55667777888998 888886667899999999998754 5799765 67777777555 667788999999
Q ss_pred EEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeC-eeecCCeEEEEecccCccCCCCCeEE
Q psy15217 217 VEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLD-QGQAGDNIGLLLRGTKREDVERGQVL 295 (396)
Q Consensus 217 i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~-~a~~G~~v~l~l~~~~~~~i~~G~vl 295 (396)
|+++|++ +.|++++|+|.+|+|++||.|.++|.+ ..++|++|++++.+++ +|.|||+|+++|+|++..++++||+|
T Consensus 409 v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~--~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl 485 (592)
T 3mca_A 409 IDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQ--EDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDIL 485 (592)
T ss_dssp EEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTT--EEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEE
T ss_pred eeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCC--ceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEe
Confidence 9999999 999999999999999999999999754 6789999999999999 99999999999999999999999999
Q ss_pred ecCCC-CCceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEcc----CCcccccCCCEEEEEEE-eccee
Q psy15217 296 AKPGS-IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP----KNKEMVMPGDNVLITVR-LINPI 369 (396)
Q Consensus 296 ~~~~~-~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~----~~~~~l~~g~~~~v~~~-~~~p~ 369 (396)
|+++. +.+++.|+|++.||+++ .||.+||++++|+|+.+++|++.+. .++++|++||.+.|+|+ +.+|+
T Consensus 486 ~~~~~~~~~~~~f~a~v~~~~~~-----~pi~~g~~~~l~~~t~~~~~~i~l~~~~~~~~~~l~~gd~~~v~l~fl~~p~ 560 (592)
T 3mca_A 486 SNYENPVRRVRSFVAEIQTFDIH-----GPILSGSTLVLHLGRTVTSVSLKIVTVNNKRSRHIASRKRALVRISFLDGLF 560 (592)
T ss_dssp ECSSSCCEEESEEEEEEEECSCS-----SCEETTEEEEEECSSCEEEEEEEEEESSSSCCSEECSSCEEEEEEEESSSCE
T ss_pred ccCCCCccccCeEEEEEEEECCC-----ccCCCCCEEEEEEcCcEEEEEEEEEeccccchhccCCCCEEEEEEEECCCcE
Confidence 99876 45578999999999986 5899999999999999999999543 35789999999999999 89999
Q ss_pred eccc------CCeEEEEeCCcEEEEEEEeeec
Q psy15217 370 AMEE------GLRFAIREGGRTVGAGVVVKII 395 (396)
Q Consensus 370 ~~~~------~~r~~lr~~~~t~~~G~i~~v~ 395 (396)
|+++ ++||+||++|+|+|+|+|++|+
T Consensus 561 ~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v~ 592 (592)
T 3mca_A 561 PLCLAEECPALGRFILRRSGDTVAAGIVKELC 592 (592)
T ss_dssp EECCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred EEEeccCCCCCCeEEEEECCcEEEEEEEEEcC
Confidence 9954 4799999999999999999874
No 9
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-65 Score=517.50 Aligned_cols=382 Identities=24% Similarity=0.336 Sum_probs=333.5
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhh---------------hhcCCccccccccCCChhHhhcCceEEeeeeEEee
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 72 (396)
..+++++|+++||+|+|||||+++|++... ..+.+.....+.+|....|+.+|+|++.....+++
T Consensus 163 ~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~ 242 (611)
T 3izq_1 163 SALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 242 (611)
T ss_dssp CCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec
Confidence 346789999999999999999999985421 12234444556788999999999999999999999
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCC-------CChhHHHHHHHHHHcCCCeEEEEEeccCCCCH-H
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-------PMPQTREHILLARQVGVPYIVVFLNKADMVDD-E 144 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g-------~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~ 144 (396)
.++.++|||||||++|.+++..+++.+|++|+|||+++| ..+|+++|+.++..++++++|||+||||+.++ +
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 999999999999999999999999999999999999986 46899999999999999988889999999874 4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCC--------CCCCCCCcHHHHHHHhhhhCCC--CCCCCCCcee
Q psy15217 145 ELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGD--------TGPLGEQSILSLSKALDTYIPT--PNRAIDGAFL 214 (396)
Q Consensus 145 ~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~--------~~~~~~~~~~~Ll~~l~~~l~~--~~~~~~~~~~ 214 (396)
..++.+..++..+++.+++....++++++||++|.+.. .+||.++.+.++++.+...+|. |.+..+.|++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r 402 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 402 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCE
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchh
Confidence 55667777888999888886567899999999997743 6899988887777776554554 5567889999
Q ss_pred EEEEEEEeeC---CCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec--------ceeeCeeecCCeEEEEecc
Q psy15217 215 LPVEDVFSIS---GRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF--------RKLLDQGQAGDNIGLLLRG 283 (396)
Q Consensus 215 ~~i~~~~~~~---~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~--------~~~~~~a~~G~~v~l~l~~ 283 (396)
++|+++|+++ +.|+|++|+|.+|+|++||.|.++|.+ ..++|++|+++ +.++++|.|||+|+++|++
T Consensus 403 ~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~--~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~ 480 (611)
T 3izq_1 403 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSE--QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRK 480 (611)
T ss_dssp EECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTT--EEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESS
T ss_pred hheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCC--ceEEEEEEEEcccccccccccccceecCCCcceEEeee
Confidence 9999999988 589999999999999999999999854 67899999998 4899999999999999999
Q ss_pred cCccCCCCCeEEecCCC--CCceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEcc------------CC
Q psy15217 284 TKREDVERGQVLAKPGS--IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP------------KN 349 (396)
Q Consensus 284 ~~~~~i~~G~vl~~~~~--~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~ 349 (396)
++..++++|++||+++. +.+++.|+|+|.||+++ .+|.+||++++|||+.++.|++... .+
T Consensus 481 ~~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~~~~ 555 (611)
T 3izq_1 481 AYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKK 555 (611)
T ss_dssp CCTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECSCS-----SCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBCTTC
T ss_pred ccHhhCcceEEccCCCCCCCceeeEEEEEEEEECCC-----CCCCCCCEEEEEECCeEeeEEeeeeeeeecccccccccC
Confidence 98999999999999876 56689999999999876 5899999999999999999998632 34
Q ss_pred cccccCCCEEEEEEEe---cceeecccC------CeEEEEeCCcEEEEEEEeeecC
Q psy15217 350 KEMVMPGDNVLITVRL---INPIAMEEG------LRFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 350 ~~~l~~g~~~~v~~~~---~~p~~~~~~------~r~~lr~~~~t~~~G~i~~v~~ 396 (396)
+++|++||.+.|+|++ .+|+|++.+ +||+||++|+|+|+|+|++|.+
T Consensus 556 ~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~v~~ 611 (611)
T 3izq_1 556 IRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 611 (611)
T ss_dssp SCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEEECC
T ss_pred ccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeCCCEEEEEEEEEecC
Confidence 5689999999999999 789999986 6999999999999999999853
No 10
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=1.3e-65 Score=506.83 Aligned_cols=374 Identities=28% Similarity=0.406 Sum_probs=290.8
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhh---------------hcCCccccccccCCChhHhhcCceEEeeeeEEeeC
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSK---------------KFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK 73 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~---------------~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~ 73 (396)
.+++++|+++||+|+|||||+++|+..... .++......+.+|..+.|+++|+|++..+..++++
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 467899999999999999999999863211 12222223456899999999999999998899999
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCC-------hhHHHHHHHHHHcCCCeEEEEEeccCCCC--H-
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMVD--D- 143 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~D~~~--~- 143 (396)
++.++|||||||++|.++|..+++.+|++|||+|+++|.+ +|+++|+.++..+++|++||++||||+.+ +
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 9999999999999999999999999999999999999863 79999999999999998888899999964 2
Q ss_pred HHHHHHHHHHHHHHHhhc-CCC-CCCCeEEEecccccccC-------CCCCCCCCcHHHHHHHhhhhCCCCCCCCCCcee
Q psy15217 144 EELLELVEIEIRELLNKY-EFP-GNDIPIIKGSAKLALEG-------DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFL 214 (396)
Q Consensus 144 ~~~~~~i~~~~~~~l~~~-~~~-~~~~~~i~~Sa~~g~~~-------~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~ 214 (396)
++.++.+..++..+++.+ ++. ...++++++||++|.+. ..+||.+.. |++.|.. ++.|.++.++|++
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~---L~~~l~~-i~~~~~~~~~p~~ 275 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPS---LLEYLDS-MTHLERKVNAPFI 275 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCC---HHHHHHH-CCCCHHHHTSCCE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchh---HHHHHHh-CCCCcCCCCCCcE
Confidence 355677777888888887 773 22578999999998773 348998764 5555554 6777777789999
Q ss_pred EEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec-ceeeCeeecCCeEEEEecccCccCCCCCe
Q psy15217 215 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF-RKLLDQGQAGDNIGLLLRGTKREDVERGQ 293 (396)
Q Consensus 215 ~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~-~~~~~~a~~G~~v~l~l~~~~~~~i~~G~ 293 (396)
++|+++|+ +.|+|++|+|.+|+|++||.|.++|.+ ..++|++|+.+ +.++++|.|||+|+++|+| +..++++||
T Consensus 276 ~~v~~~~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~ 350 (467)
T 1r5b_A 276 MPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPIN--QTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGY 350 (467)
T ss_dssp EECCEEEE--SSSEEEEEECCBSEEETTEEEEEETTT--EEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTC
T ss_pred EEEEEEEe--CCCeEEEEEEeeeEEeeCCEEEEccCC--eeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceE
Confidence 99999987 588999999999999999999999853 67899999998 8999999999999999999 888999999
Q ss_pred EEecCC-CCCceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEcc------------CCcccccCCCEEE
Q psy15217 294 VLAKPG-SIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP------------KNKEMVMPGDNVL 360 (396)
Q Consensus 294 vl~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~~~l~~g~~~~ 360 (396)
+|++++ ++.+++.|+|++.||+++ ++|.+||+|++|+++.+++|++... .++++|++||.+.
T Consensus 351 vl~~~~~~~~~~~~f~a~v~~l~~~-----~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~~~~~~~~~~~~l~~g~~~~ 425 (467)
T 1r5b_A 351 VLTSTKNPVHATTRFIAQIAILELP-----SILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKII 425 (467)
T ss_dssp EEECSSSCCCEEEEEEEEEEECSSC-----CCBSSCCCBEEESSSCCCCBEESSCCCCCCSSCCCCSSCCSBCCTTCBCC
T ss_pred EEeCCCCCCccceEEEEEEEEeCCC-----CccCCCCEEEEEEeCCEEEEEEEEEEEEecCCccccccCccccCCCCEEE
Confidence 999987 456689999999999875 5799999999999999999998521 1356899999999
Q ss_pred EEEEecceeecccCC------eEEEEeCCcEEEEEEEeeecC
Q psy15217 361 ITVRLINPIAMEEGL------RFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 361 v~~~~~~p~~~~~~~------r~~lr~~~~t~~~G~i~~v~~ 396 (396)
|+|+|.+|+|+++|. ||+|||.|+|+|+|+|++|.+
T Consensus 426 v~l~~~~p~~~~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~~ 467 (467)
T 1r5b_A 426 AELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 467 (467)
T ss_dssp EEEEEEEEEECCCTTTCHHHHEEEEECSSSCEEEEEEEEEEC
T ss_pred EEEEECcEEEEEEcCcCCCCccEEEEECCeEEEEEEEEEecC
Confidence 999999999999993 999999999999999999874
No 11
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=1.9e-61 Score=473.91 Aligned_cols=371 Identities=24% Similarity=0.329 Sum_probs=310.9
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhc-----------------CCccccccccCCChhHhhcCceEEeeeeEEe
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKF-----------------GGEAKSYDQIDAAPEEKARGITINTAHIEYE 71 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~-----------------~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~ 71 (396)
.++.++|+++||+|+|||||+++|++...... +......+.+|.+++|+++|+|++..+..++
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 35679999999999999999999987541110 0111122357889999999999999999999
Q ss_pred eCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH-HHHHHHH
Q psy15217 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELV 150 (396)
Q Consensus 72 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~~~~~~i 150 (396)
.++..+.|||||||++|.+++..++..+|++|||+|++++.+.|+++|+.++..++++++|+++||+|+.++ ++.++.+
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i 180 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESI 180 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888888999999874 3455666
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEecccccccCC-----CCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCC
Q psy15217 151 EIEIRELLNKYEFPGNDIPIIKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG 225 (396)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~-----~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~ 225 (396)
..++.++++.+++.....+++++||++|.+.. .+||.++.+.++++. ++.|.+..++|++++|+++++..+
T Consensus 181 ~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~----i~~~~~~~~~~~~~~v~~v~~~~~ 256 (434)
T 1zun_B 181 KADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILET----VEIASDRNYTDLRFPVQYVNRPNL 256 (434)
T ss_dssp HHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHH----SCCTTCCCSSSCEEECCEEECSSS
T ss_pred HHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhc----CCCcccCCCCCcEEEEEEEeccCC
Confidence 77888888888743346799999999987633 489987655555443 566777788999999999998877
Q ss_pred CceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCC-Cce
Q psy15217 226 RGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI-KPH 304 (396)
Q Consensus 226 ~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~-~~~ 304 (396)
.|+.+.|+|.+|+|++||.|.++|.+ ...+|++|++++.++++|.|||+|++.++ +..++++||+|++++.+ .++
T Consensus 257 ~~~g~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~a~aG~~v~~~l~--~~~~i~~G~~l~~~~~~~~~~ 332 (434)
T 1zun_B 257 NFRGFAGTLASGIVHKGDEIVVLPSG--KSSRVKSIVTFEGELEQAGPGQAVTLTME--DEIDISRGDLLVHADNVPQVS 332 (434)
T ss_dssp SCCEEEEECCBSCEETTCEEEETTTC--CEEEEEEEEETTEEESEECTTCEEEEEES--SCCCCCTTCEEEETTSCCCEE
T ss_pred CceEEEEEEecceEeCCCEEEEecCC--eEEEEEEEEEcCcceeEecCCCEEEEEeC--CccccCCccEEECCCCCCCcc
Confidence 78889999999999999999999743 67899999999999999999999999998 45689999999998765 668
Q ss_pred eEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEccC-----------CcccccCCCEEEEEEEecceeeccc
Q psy15217 305 KHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPK-----------NKEMVMPGDNVLITVRLINPIAMEE 373 (396)
Q Consensus 305 ~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~l~~g~~~~v~~~~~~p~~~~~ 373 (396)
+.|+|++.||+. .+|.+||++++|+|+.++.|++.... ++++|++||.+.|+|+|.+|+|+++
T Consensus 333 ~~f~a~~~~l~~------~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~~~~~~l~~~d~~~v~~~~~~p~~~~~ 406 (434)
T 1zun_B 333 DAFDAMLVWMAE------EPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALDG 406 (434)
T ss_dssp EEEEEEEEECCS------SCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCCCCCSCBCTTCEEEEEEEEEEEEECCC
T ss_pred cEEEEEEEEecc------ccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccccCccEeCCCCEEEEEEEECCeEEEcc
Confidence 999999999963 48999999999999999999986332 3678999999999999999999999
Q ss_pred CC------eEEEEeC--CcEEEEEEEee
Q psy15217 374 GL------RFAIREG--GRTVGAGVVVK 393 (396)
Q Consensus 374 ~~------r~~lr~~--~~t~~~G~i~~ 393 (396)
|. ||+|||. |+|+|+|+|+.
T Consensus 407 ~~~~~~~grf~l~d~~~~~tv~~G~i~~ 434 (434)
T 1zun_B 407 YSSNRTTGAFIVIDRLTNGTVAAGMIIA 434 (434)
T ss_dssp TTTCTTTTEEEEECTTTCCEEEEEEEEC
T ss_pred cccCCccceEEEEECCCCcEEEEEEEeC
Confidence 86 9999864 79999999963
No 12
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=5e-62 Score=482.30 Aligned_cols=359 Identities=28% Similarity=0.462 Sum_probs=302.3
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
+..++++|+++||+|+|||||+++|++... ...+|...+|+++|+|++..+..++++++.++|||||||++
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~---------~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~ 85 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIAS---------TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD 85 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEETTEEEEECCCSSHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCc---------ccccccccccccCccEEecceEEEEECCEEEEEEECCChHH
Confidence 334689999999999999999999986421 12478889999999999999888988999999999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc-CCCCC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY-EFPGN 166 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~-~~~~~ 166 (396)
|.+++..++..+|+++||+|+++|.++|+++|+.++..+++|. |+++||+|+.+. +.++.+.+++.++++.. ++.
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~~-~~~~~~~~~l~~~l~~~~~~~-- 161 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNAGT-EEIKRTEMIMKSILQSTHNLK-- 161 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSSCH-HHHHHHHHHHHHHHHHSSSGG--
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCcccc-hhHHHHHHHHHHHHhhhcccc--
Confidence 9999999999999999999999999999999999999999997 557899999985 44555666788888776 552
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC--CCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCE
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP--NRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEE 244 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~--~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~ 244 (396)
..|++++||++| .++.+|+++|.+.++.| .++.++|++++|+++|.+++.|+|++|+|.+|.+++||.
T Consensus 162 ~~~ii~vSA~~g----------~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~ 231 (482)
T 1wb1_A 162 NSSIIPISAKTG----------FGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDE 231 (482)
T ss_dssp GCCEEECCTTTC----------TTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEE
T ss_pred cceEEEEECcCC----------CCHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCE
Confidence 578999999997 68999999999876655 666788999999999999999999999999999999999
Q ss_pred EEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEE-ecCCCCCceeEEEEEEEEeecCCCCCCc
Q psy15217 245 LEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVL-AKPGSIKPHKHFTGEIYALSKDEGGRHT 323 (396)
Q Consensus 245 v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl-~~~~~~~~~~~f~a~v~~l~~~~~~~~~ 323 (396)
+.+.|.+ ...+|++|+.+++++++|.|||+|++.+++++..++++||+| +.++++++++.|+|++.|+++. ..
T Consensus 232 v~~~p~~--~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~~~~~~~~~~~a~v~~l~~~----~~ 305 (482)
T 1wb1_A 232 LKVLPIN--MSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIVAKIKISDIF----KY 305 (482)
T ss_dssp ECCTTTC--CCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTTCCCCCEEEEEECCCCCSSC----CS
T ss_pred EEECCCC--cEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEecCCCCCceeeEEEEEEEEeccC----Cc
Confidence 9998754 567999999999999999999999999999988899999999 7777778889999999999863 15
Q ss_pred ccccCceeEEEEEeeEEEEEEEccC-C----------cccccCCCEEEEEEEecceeecccCCeEEEEe---C---CcEE
Q psy15217 324 PFFSNYRPQFYFRTTDVTGSIELPK-N----------KEMVMPGDNVLITVRLINPIAMEEGLRFAIRE---G---GRTV 386 (396)
Q Consensus 324 ~i~~g~~~~~~~~~~~~~~~i~~~~-~----------~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~---~---~~t~ 386 (396)
++.+||++++|+|+.+++|++.... . ++.|++||.+.|+|+|.+|+|+++++||+||+ + ++|+
T Consensus 306 ~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~~tv 385 (482)
T 1wb1_A 306 NLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTLRIX 385 (482)
T ss_dssp CCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSCCCC
T ss_pred ccCCCCEEEEEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccCceEe
Confidence 8999999999999999999986543 1 46789999999999999999999999999998 4 7999
Q ss_pred EEEEEeeec
Q psy15217 387 GAGVVVKII 395 (396)
Q Consensus 387 ~~G~i~~v~ 395 (396)
|+|+|+++.
T Consensus 386 g~G~v~~~~ 394 (482)
T 1wb1_A 386 GHGLIEEFK 394 (482)
T ss_dssp CBCCEEECC
T ss_pred eEEEEEecc
Confidence 999999874
No 13
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=1.3e-58 Score=451.08 Aligned_cols=350 Identities=32% Similarity=0.476 Sum_probs=295.6
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--------------
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-------------- 73 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-------------- 73 (396)
..++.++|+++||+|||||||+++|++. ..+..++|+++|+|++..+..+...
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~ 72 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTC-------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBC
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCC-------------ccccChhhhcCCcEEEEeeeeeecccccccccccccccc
Confidence 4567899999999999999999999853 2567788999999997765543321
Q ss_pred ---------CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 74 ---------ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 74 ---------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
.+.++|||||||++|.++|..++..+|++|||+|+++|. .+||++|+..+..++++++|+++||+|+.++
T Consensus 73 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK 152 (410)
T ss_dssp TTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred cccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH
Confidence 167999999999999999999999999999999999987 8999999999999999878888999999986
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEee
Q psy15217 144 EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSI 223 (396)
Q Consensus 144 ~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~ 223 (396)
++..+ ..+++.++++.... ...|++++||++| .++.+|+++|.+.++.|.++.+.|++++|+++|.+
T Consensus 153 ~~~~~-~~~~i~~~l~~~~~--~~~~~i~vSA~~g----------~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v 219 (410)
T 1kk1_A 153 EKALE-NYRQIKEFIEGTVA--ENAPIIPISALHG----------ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDV 219 (410)
T ss_dssp HHHHH-HHHHHHHHHTTSTT--TTCCEEECBTTTT----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECC
T ss_pred HHHHH-HHHHHHHHHHhcCc--CCCeEEEeeCCCC----------CCHHHHHHHHHHhCCCCccccCCCcEEEEEEEEec
Confidence 43322 33456777765432 4579999999997 58999999999989988888899999999999987
Q ss_pred CC--------CceEEEEEEEeeEEecCCEEEEeecCC----------ceeEEEEEEEecceeeCeeecCCeEEEEec---
Q psy15217 224 SG--------RGTVVTGRVERGIVRVGEELEIIGIKD----------TVKTTCTGVEMFRKLLDQGQAGDNIGLLLR--- 282 (396)
Q Consensus 224 ~~--------~G~v~~g~v~~G~l~~g~~v~~~p~~~----------~~~~~v~si~~~~~~~~~a~~G~~v~l~l~--- 282 (396)
++ +|+|++|+|.+|+|++||.|.++|... ...++|++|+.+++++++|.|||+|++.++
T Consensus 220 ~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~ 299 (410)
T 1kk1_A 220 NKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDP 299 (410)
T ss_dssp SCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCG
T ss_pred cCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEECCeEecEEcCCCEEEEEEecCc
Confidence 54 678999999999999999999988421 125899999999999999999999999986
Q ss_pred ccCccCCCCCeEEecCCCCCc-eeEEEEEEEEeecCCCCC----CcccccCceeEEEEEeeEEEEEEEccCCcccccCCC
Q psy15217 283 GTKREDVERGQVLAKPGSIKP-HKHFTGEIYALSKDEGGR----HTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGD 357 (396)
Q Consensus 283 ~~~~~~i~~G~vl~~~~~~~~-~~~f~a~v~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~ 357 (396)
++++.++++||+|++++.+++ ++.|+|++.||+++.+.+ .++|.+||++++|+|+.++.|++....+ |
T Consensus 300 ~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~-------~ 372 (410)
T 1kk1_A 300 YLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGK-------D 372 (410)
T ss_dssp GGTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEET-------T
T ss_pred ccchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCCEEEEEEcCCEEeEEEEEecC-------C
Confidence 566689999999999887655 679999999999854333 3689999999999999999999975432 3
Q ss_pred EEEEEEEecceeecccCCeEEEEe----CCcEEEEEEEe
Q psy15217 358 NVLITVRLINPIAMEEGLRFAIRE----GGRTVGAGVVV 392 (396)
Q Consensus 358 ~~~v~~~~~~p~~~~~~~r~~lr~----~~~t~~~G~i~ 392 (396)
.|+++|.+|+|+++|+||+||+ .+||+|+|.|+
T Consensus 373 --~~~l~~~~p~~~~~~~~~~~~~~~~~~~r~ig~G~i~ 409 (410)
T 1kk1_A 373 --EIEVKLQIPVCAEPGDRVAISRQIGSRWRLIGYGIIK 409 (410)
T ss_dssp --EEEEEEEEEEECCTTCEEEEEEEETTEEEEEEEEEEE
T ss_pred --EEEEEeCCcEEecCCCEEEEEEecCCCcEEEEEEEEc
Confidence 6788999999999999999998 67999999987
No 14
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=5e-59 Score=453.48 Aligned_cols=350 Identities=32% Similarity=0.481 Sum_probs=285.0
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee---------------
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET--------------- 72 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~--------------- 72 (396)
..+++++|+++||+|+|||||+++|++. ..+.+.+|+++|+|++..+..+..
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~ 70 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGV-------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRC 70 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSC-------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBC
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCC-------------ccccCcccccCCcEEEecccccccccccccccccccccc
Confidence 3467899999999999999999999853 257778899999999776543322
Q ss_pred C--------CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 73 K--------ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 73 ~--------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
+ .+.++|||||||++|.++|.+++..+|++|||+|++++. .+||++|+..+..++++++++++||+|+.++
T Consensus 71 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 71 PNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDE 150 (408)
T ss_dssp TTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCT
T ss_pred cccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCH
Confidence 1 267999999999999999999999999999999999987 8999999999999998778888999999875
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEee
Q psy15217 144 EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSI 223 (396)
Q Consensus 144 ~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~ 223 (396)
++.. ...+++.++++.... ...|++++||++| .++++|+++|.+.++.|.++.++|++++|+++|.+
T Consensus 151 ~~~~-~~~~~i~~~l~~~~~--~~~~~i~vSA~~g----------~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v 217 (408)
T 1s0u_A 151 KQAE-ENYEQIKEFVKGTIA--ENAPIIPISAHHE----------ANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDI 217 (408)
T ss_dssp TTTT-THHHHHHHHHTTSTT--TTCCEEEC----------------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECC
T ss_pred HHHH-HHHHHHHHHHhhcCC--CCCeEEEeeCCCC----------CCHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEee
Confidence 3211 122356667765432 4679999999997 68999999999989988888899999999999988
Q ss_pred CC--------CceEEEEEEEeeEEecCCEEEEeecCC----------ceeEEEEEEEecceeeCeeecCCeEEEEec---
Q psy15217 224 SG--------RGTVVTGRVERGIVRVGEELEIIGIKD----------TVKTTCTGVEMFRKLLDQGQAGDNIGLLLR--- 282 (396)
Q Consensus 224 ~~--------~G~v~~g~v~~G~l~~g~~v~~~p~~~----------~~~~~v~si~~~~~~~~~a~~G~~v~l~l~--- 282 (396)
++ +|+|++|+|.+|+|++||.|.++|... ...++|++|+++++++++|.|||+|++.++
T Consensus 218 ~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~~ 297 (408)
T 1s0u_A 218 NKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDP 297 (408)
T ss_dssp CCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCG
T ss_pred cCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCCCeEEEEeccCc
Confidence 64 688999999999999999999988421 136899999999999999999999999986
Q ss_pred ccCccCCCCCeEEecCCCCCc-eeEEEEEEEEeecCCCCC----CcccccCceeEEEEEeeEEEEEEEccCCcccccCCC
Q psy15217 283 GTKREDVERGQVLAKPGSIKP-HKHFTGEIYALSKDEGGR----HTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGD 357 (396)
Q Consensus 283 ~~~~~~i~~G~vl~~~~~~~~-~~~f~a~v~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~ 357 (396)
++++.++++||+|++++.+++ ++.|+|++.||+++.+++ ..+|..||++++|+|+.++.|++.... +|
T Consensus 298 ~~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~-------~~ 370 (408)
T 1s0u_A 298 YLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSAR-------GD 370 (408)
T ss_dssp GGTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEEE-------TT
T ss_pred ccchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCCEEEEEEcCCEEEEEEEEec-------CC
Confidence 677789999999999886655 679999999999864433 368999999999999999999997543 23
Q ss_pred EEEEEEEecceeecccCCeEEEEe----CCcEEEEEEEe
Q psy15217 358 NVLITVRLINPIAMEEGLRFAIRE----GGRTVGAGVVV 392 (396)
Q Consensus 358 ~~~v~~~~~~p~~~~~~~r~~lr~----~~~t~~~G~i~ 392 (396)
.|+++|.+|+|+++|+||+||+ .++|+|+|.|+
T Consensus 371 --~~~~~~~~p~~~~~~~~~~~~~~~~~~~r~ig~G~i~ 407 (408)
T 1s0u_A 371 --IADIKLKLPICAEIGDRVAISRRVGSRWRLIGYGTIE 407 (408)
T ss_dssp --EEEEEEEEEEECCTTCEEEEEEECSSSEEEEEEEEEC
T ss_pred --EEEEEECCcEEecCCCEEEEEEecCCCeEEEEEEEEc
Confidence 6788999999999999999998 57999999986
No 15
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=2e-59 Score=448.41 Aligned_cols=334 Identities=18% Similarity=0.262 Sum_probs=289.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHH
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~ 93 (396)
+|+++||+|+|||||+++|+ ++|+|++..+..++++++.++|||||||++|.+++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHH
Confidence 99999999999999999986 458899888888999999999999999999999999
Q ss_pred hhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEe-ccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15217 94 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLN-KADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 172 (396)
Q Consensus 94 ~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviN-K~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~ 172 (396)
.+++.+|++++|+| ++|.++|+++|+.++..+++|.+|+++| |||+ +. +..+.+.++++++++..++ ..+|+++
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~-~~~~~~~~~i~~~l~~~~~--~~~~ii~ 153 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM-HAIDELKAKLKVITSGTVL--QDWECIS 153 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH-HHHHHHHHHHHHHTTTSTT--TTCEEEE
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH-HHHHHHHHHHHHHHHhcCC--CceEEEe
Confidence 99999999999999 8999999999999999999998567789 9999 64 3345555678888877655 4589999
Q ss_pred --ecccccccCCCCCCCCCcHHHHHHHhhhhCCCC---CCC-CCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEE
Q psy15217 173 --GSAKLALEGDTGPLGEQSILSLSKALDTYIPTP---NRA-IDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELE 246 (396)
Q Consensus 173 --~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~---~~~-~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~ 246 (396)
+||+++ .|+ .|+++|+++|.+.++.+ ..+ ...|++++|+++|++++.|++++|+|++|.+++||+|.
T Consensus 154 ~~~SA~~~-----~~g--~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~ 226 (370)
T 2elf_A 154 LNTNKSAK-----NPF--EGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTK 226 (370)
T ss_dssp CCCCTTSS-----STT--TTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEE
T ss_pred cccccccC-----cCC--CCHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEE
Confidence 999983 142 68999999998877643 112 34567888999999999999999999999999999999
Q ss_pred EeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCeEEecCCCCCceeEEEEEEEEeecCCCCCCcccc
Q psy15217 247 IIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFF 326 (396)
Q Consensus 247 ~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~ 326 (396)
+.|.+ ..++|++|+++++++++|.|||+|+++|++++..++++||+|++ ++ ++++.|+|++.|++++ ++|.
T Consensus 227 ~~p~~--~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~-~~-~~~~~f~a~v~~l~~~-----~~i~ 297 (370)
T 2elf_A 227 IFPLD--RDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD-KE-IVTTDYTLECTVSKFT-----KKIE 297 (370)
T ss_dssp EETTT--EEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES-CC-EEEEEEEEEEEECTTS-----CCBC
T ss_pred ECCCC--cEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC-CC-ceeEEEEEEEEEECCC-----CCCC
Confidence 99753 78899999999999999999999999999998899999999998 55 7789999999999875 5899
Q ss_pred cCceeEEEEEeeEEEEEEEccC----CcccccCCCEEEEEEEecceeecccCCeEEEEeCC---cEEEEEEEe
Q psy15217 327 SNYRPQFYFRTTDVTGSIELPK----NKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGG---RTVGAGVVV 392 (396)
Q Consensus 327 ~g~~~~~~~~~~~~~~~i~~~~----~~~~l~~g~~~~v~~~~~~p~~~~~~~r~~lr~~~---~t~~~G~i~ 392 (396)
+||++++|+|+.+++|++.... +.+.+++||.+.|+|+|.+|+|+++|+||+||+.+ +|+|+|+|.
T Consensus 298 ~g~~~~~~~~t~~~~~~v~~l~~d~~~~~~~~~g~~~~v~l~~~~pi~~~~~~rfilr~~~~~~~tig~G~~~ 370 (370)
T 2elf_A 298 PASVLHLFVGLQSEPVRVEKILVDGNEVEEAKPGSTCVLELSGNKKLAYSKQDRFLLANLDLTQRFAAYGFSK 370 (370)
T ss_dssp TTCEEEEEETTEEEEEEEEEEEETTEEESCBCTTCEEEEEEEEEEEEEECTTSCEEEECTTSSSCEEEEEEEC
T ss_pred CCCEEEEEEcCCEEEEEEEEEEeCCCcceeecCCCEEEEEEEECcEEEEeCCCEEEEEECCCCCEEEEEEEeC
Confidence 9999999999999999997442 22356799999999999999999999999999854 799999873
No 16
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=4.7e-56 Score=431.85 Aligned_cols=362 Identities=27% Similarity=0.386 Sum_probs=289.4
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEE-----eeCCeeEEEEec
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY-----ETKARHYAHVDC 82 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~-----~~~~~~~~iiDt 82 (396)
..++.++|+++||+|+|||||+++|++.......+......... ...+..++.+.+...... ....+.++||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVC-ESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEEC-TTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeec-cccccccceecccccccccccccccccceEEEEEC
Confidence 45678999999999999999999998743222111000000000 011112222222111111 122368999999
Q ss_pred CChhhhHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 83 PGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 83 pG~~~~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
|||++|.++|..++..+|++++|+|++++. ++|+++|+..+..++++++++++||+|+.++++.. ...+++.++++..
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~-~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEAL-SQYRQIKQFTKGT 161 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHH-HHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHH-HHHHHHHHHHHhh
Confidence 999999999999999999999999999987 99999999999999987788889999999875433 3334677777765
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCC--------CceEEEEE
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG--------RGTVVTGR 233 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~--------~G~v~~g~ 233 (396)
+. ..+|++++||++| .++.+|+++|.+.++.|.++.++|++++|+++|.+.+ +|+|++|+
T Consensus 162 ~~--~~~~ii~vSA~~g----------~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~ 229 (403)
T 3sjy_A 162 WA--ENVPIIPVSALHK----------INIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGS 229 (403)
T ss_dssp TT--TTCCEEECBTTTT----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEE
T ss_pred CC--CCCEEEEEECCCC----------cChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEE
Confidence 54 4689999999997 6899999999998998888889999999999999876 79999999
Q ss_pred EEeeEEecCCEEEEeecCCc----------eeEEEEEEEecceeeCeeecCCeEEEEec---ccCccCCCCCeEEecCCC
Q psy15217 234 VERGIVRVGEELEIIGIKDT----------VKTTCTGVEMFRKLLDQGQAGDNIGLLLR---GTKREDVERGQVLAKPGS 300 (396)
Q Consensus 234 v~~G~l~~g~~v~~~p~~~~----------~~~~v~si~~~~~~~~~a~~G~~v~l~l~---~~~~~~i~~G~vl~~~~~ 300 (396)
|.+|.+++||+|.++|.... ..++|++|+++++++++|.|||+|++.|+ ++++.++++||+|++++.
T Consensus 230 v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~~~~~ 309 (403)
T 3sjy_A 230 IIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLADA 309 (403)
T ss_dssp EEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEEETTC
T ss_pred EEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCCEEEEEeccccccchhhhccccEEeCCCC
Confidence 99999999999999885310 25799999999999999999999999986 666789999999999987
Q ss_pred CCc-eeEEEEEEEEeecCCCCC----CcccccCceeEEEEEeeEEEEEEEccCCcccccCCCEEEEEEEecceeecccCC
Q psy15217 301 IKP-HKHFTGEIYALSKDEGGR----HTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGL 375 (396)
Q Consensus 301 ~~~-~~~f~a~v~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~ 375 (396)
+++ ++.|+|++.||++..+++ ..++.+||++++|+|+.++.|++...++ + .++++|.+|+|++.|+
T Consensus 310 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~~~-------~--~~~~~l~~p~~~~~g~ 380 (403)
T 3sjy_A 310 EVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKK-------D--EIEVELRRPVAVWSNN 380 (403)
T ss_dssp CCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEECS-------S--EEEEEEEEEEECCSSS
T ss_pred CCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEecC-------c--eEEEEeCCcEeeccCC
Confidence 655 689999999999754433 4689999999999999999999975542 2 5899999999999999
Q ss_pred -eEEE-EeCC---cEEEEEEEe
Q psy15217 376 -RFAI-REGG---RTVGAGVVV 392 (396)
Q Consensus 376 -r~~l-r~~~---~t~~~G~i~ 392 (396)
||+| |..+ |++|+|.|+
T Consensus 381 ~r~~i~r~~~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 381 IRTVISRQIAGRWRMIGWGLVE 402 (403)
T ss_dssp CEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEEeCCcEEEEEEEEEE
Confidence 9997 6433 899999985
No 17
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=2.3e-37 Score=310.26 Aligned_cols=269 Identities=24% Similarity=0.294 Sum_probs=200.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC-----CeeEEEEecCC
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-----ARHYAHVDCPG 84 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG 84 (396)
+...||+++||+|||||||+++|+.......... ...+.+|..+.|+++|+|+......+.+. ...++||||||
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE-KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCccccc-ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 3478999999999999999999987532211111 12356899999999999998765555432 36788999999
Q ss_pred hhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 85 HADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 85 ~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
|.+|..++.++++.+|++|+|+|+++|...||.+++..+...++| +|+++||+|+.+++ .+....++. +.+++.
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~--~~~v~~el~---~~lg~~ 156 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPSAD--VDRVKKQIE---EVLGLD 156 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHHHHHHH---HTSCCC
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccccC--HHHHHHHHH---HhhCCC
Confidence 999999999999999999999999999999999999999999999 55678999998652 122222333 334542
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCE
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEE 244 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~ 244 (396)
..+++++||++| .|+.+|++++.+.+|+|..+.+.|+++.|.+++..++.|+++.|+|.+|++++||.
T Consensus 157 --~~~vi~vSAktg----------~GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~ 224 (600)
T 2ywe_A 157 --PEEAILASAKEG----------IGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDK 224 (600)
T ss_dssp --GGGCEECBTTTT----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCE
T ss_pred --cccEEEEEeecC----------CCchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCE
Confidence 246999999997 58999999999999999888889999999999999999999999999999999999
Q ss_pred EEEeecCCceeEEEEEEEec---ceeeCeeecCCeEEEEeccc-CccCCCCCeEEecCCC
Q psy15217 245 LEIIGIKDTVKTTCTGVEMF---RKLLDQGQAGDNIGLLLRGT-KREDVERGQVLAKPGS 300 (396)
Q Consensus 245 v~~~p~~~~~~~~v~si~~~---~~~~~~a~~G~~v~l~l~~~-~~~~i~~G~vl~~~~~ 300 (396)
|.+.|.+ ...+|+++..+ +.+++++.|||.+.+. .|+ +..++++||+|+.++.
T Consensus 225 I~~~~~~--~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~-~gi~~~~~~~~GDtl~~~~~ 281 (600)
T 2ywe_A 225 IMLMSTG--KEYEVTEVGAQTPKMTKFDKLSAGDVGYIA-ASIKDVRDIRIGDTITHAKN 281 (600)
T ss_dssp EEETTTT--EEEECCEEEEESSSEEEESCEETTCEEEEE-SSCCCTTSSCTTCEEEESSS
T ss_pred EEecccc--ceEeeecccccCCCceECCEEecCceeeee-ccccchhhccCCCEEEeCCC
Confidence 9998643 55677777654 4688999999966554 565 3568999999997654
No 18
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=8.6e-38 Score=312.59 Aligned_cols=270 Identities=23% Similarity=0.309 Sum_probs=197.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhh---c---CCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecC
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKK---F---GGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCP 83 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~---~---~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtp 83 (396)
....||+|+||+|||||||+.+|+...... + .+.......+|..+.|++||+||..+...+++.++.++|||||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 457899999999999999999998543221 1 1222223468999999999999999999999999999999999
Q ss_pred ChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH--HHHHHHHHHHHHHHHhh-
Q psy15217 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEIRELLNK- 160 (396)
Q Consensus 84 G~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~--~~~~~~i~~~~~~~l~~- 160 (396)
||.+|..++.++++.+|+||+||||.+|++.||+..+..+...++|.++ +|||||+... .+..+ ++++.+..
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~-fINK~Dr~~ad~~~~~~----~i~~~l~~~ 183 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMT-FVNKMDREALHPLDVMA----DIEQHLQIE 183 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEE-EEECTTSCCCCHHHHHH----HHHHHHTSE
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEE-EEecccchhcchhHhhh----hhhhhcCCc
Confidence 9999999999999999999999999999999999999999999999665 6899998764 22222 23322210
Q ss_pred ----------------------------------------------------------------------cC--------
Q psy15217 161 ----------------------------------------------------------------------YE-------- 162 (396)
Q Consensus 161 ----------------------------------------------------------------------~~-------- 162 (396)
.+
T Consensus 184 ~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~ 263 (548)
T 3vqt_A 184 CAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERY 263 (548)
T ss_dssp EEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred eEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHH
Confidence 00
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC---------CCCCceeEEEEEEEee---CCCceEE
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR---------AIDGAFLLPVEDVFSI---SGRGTVV 230 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~---------~~~~~~~~~i~~~~~~---~~~G~v~ 230 (396)
..+..+|+++.||+++ .|+..||+++..++|.|.. +.++||...|.+++.. +..|.+.
T Consensus 264 ~~g~~~PV~~gSA~~~----------~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla 333 (548)
T 3vqt_A 264 LKGELTPVFFGSAINN----------FGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMA 333 (548)
T ss_dssp HTTSEEEEEECBGGGT----------BSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEE
T ss_pred HhCCcceeeecccccC----------cCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEE
Confidence 0123468999999987 5899999999999998853 3467888888888765 6789999
Q ss_pred EEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeEEecCCC
Q psy15217 231 TGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300 (396)
Q Consensus 231 ~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~ 300 (396)
.+||.||+|+.||.|+... .+.+.++..+... +.++++|.|||++++ .++ .+++.||+||+.+.
T Consensus 334 ~~RV~sG~l~~g~~v~~~~--~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~~GDTl~~~~~ 401 (548)
T 3vqt_A 334 FLRICSGTFTRGMRLKHHR--TGKDVTVANATIFMAQDRTGVEEAFPGDIIGI--PNH--GTIKIGDTFTESKE 401 (548)
T ss_dssp EEEEEESCEETTCEEEETT--TTEEEECTTCEECCCSSCCSSCEECTTCEEEE--ECS--SCCCTTCEEESSSS
T ss_pred EEEEecceecCCCEEEeec--cccccccchhhhhccccccccCEEecCCEEEe--cCC--ccCccCCEecCCCC
Confidence 9999999999999998753 3455666666554 468899999999988 443 47889999998754
No 19
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=1.7e-36 Score=304.70 Aligned_cols=268 Identities=24% Similarity=0.319 Sum_probs=195.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC-----CeeEEEEecCCh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-----ARHYAHVDCPGH 85 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG~ 85 (396)
...||+++||+|||||||+++|+.......... ...+.+|..+.|+++|+|+......+.+. ...++|||||||
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE-MEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCccccc-ccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 468999999999999999999987532221111 12356899999999999998776666543 367899999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
.+|..++.++++.+|++++|+|+++|...|+.+++..+...++| +|+++||+|+.+++ .+....++.+ .+++.
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~--~~~v~~ei~~---~lg~~- 154 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAAD--PERVAEEIED---IVGID- 154 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHHHHHHHH---HTCCC-
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCccccc--HHHHHHHHHH---HhCCC-
Confidence 99999999999999999999999999999999999999999999 55578999998752 1222233433 33443
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEE
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEEL 245 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v 245 (396)
..+++++||++| .|+.+|++++.+.+|.|..+.++|+++.|.+++..++.|.++.++|.+|+|++||++
T Consensus 155 -~~~vi~vSAktg----------~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v 223 (599)
T 3cb4_D 155 -ATDAVRCSAKTG----------VGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKV 223 (599)
T ss_dssp -CTTCEEECTTTC----------TTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEE
T ss_pred -cceEEEeecccC----------CCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEE
Confidence 235899999997 589999999999999998888999999999999999999999999999999999999
Q ss_pred EEeecCCceeEEEEEEEec---ceeeCeeecCCeEEEEeccc-CccCCCCCeEEecCCC
Q psy15217 246 EIIGIKDTVKTTCTGVEMF---RKLLDQGQAGDNIGLLLRGT-KREDVERGQVLAKPGS 300 (396)
Q Consensus 246 ~~~p~~~~~~~~v~si~~~---~~~~~~a~~G~~v~l~l~~~-~~~~i~~G~vl~~~~~ 300 (396)
.+.+.+ ...+|..+... +.+++++.|||.+.+ +.++ +..++++||+|++++.
T Consensus 224 ~~~~~~--~~~~v~~i~~~~~~~~~~~~~~aGdi~~~-~~gi~~~~~~~~GDtl~~~~~ 279 (599)
T 3cb4_D 224 KVMSTG--QTYNADRLGIFTPKQVDRTELKCGEVGWL-VCAIKDIHGAPVGDTLTLARN 279 (599)
T ss_dssp EETTTC--CEEECCEEEEESSSEEECSEECTTCEEEE-ECCCSSGGGSCTTCEEEESSS
T ss_pred Eecccc--ceeEEeeeeeccCCceECCEEcCCCeeEe-eccccccccCccCCEeeecCC
Confidence 998744 45566777653 468899999995544 4565 3568999999997654
No 20
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=265.85 Aligned_cols=180 Identities=22% Similarity=0.387 Sum_probs=160.7
Q ss_pred CCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCcc
Q psy15217 208 AIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKRE 287 (396)
Q Consensus 208 ~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~ 287 (396)
+.++||+|+|+++|+ +.|++++|+|++|.+++||+|.+.|.+ .+++|++|+++++++++|.|||+|+++|+|++..
T Consensus 2 ~~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~--~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~ 77 (204)
T 3e1y_E 2 PLGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNK--HNVEVLGILSDDVETDTVAPGENLKIRLKGIEEE 77 (204)
T ss_dssp -----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTT--EEEEEEEECSSSSCBSEECTTSEEEEEEEESSSS
T ss_pred CCCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCC--CEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHH
Confidence 357899999999998 799999999999999999999999854 7899999999999999999999999999999999
Q ss_pred CCCCCeEEecCCCC-CceeEEEEEEEEeecCCCCCCcccccCceeEEEEEeeEEEEEEEcc-------------CCcccc
Q psy15217 288 DVERGQVLAKPGSI-KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMV 353 (396)
Q Consensus 288 ~i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l 353 (396)
++++||+|++++++ +++++|+|++.||+++ .+|.+||++++|+|+.++.|++... .++++|
T Consensus 78 di~rG~vl~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l 152 (204)
T 3e1y_E 78 EILPGFILCDPNNLCHSGRTFDAQIVIIEHK-----SIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFV 152 (204)
T ss_dssp CCCTTCEEBCSSSCCCCCSEEEEEEECCSCC-----SCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCC
T ss_pred HCccceEEECCCCCCchhEEEEEEEEEeCCC-----CccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCc
Confidence 99999999998765 5679999999999985 4799999999999999999998632 134689
Q ss_pred cCCCEEEEEEEecceeecccC------CeEEEEeCCcEEEEEEEeeecC
Q psy15217 354 MPGDNVLITVRLINPIAMEEG------LRFAIREGGRTVGAGVVVKIIE 396 (396)
Q Consensus 354 ~~g~~~~v~~~~~~p~~~~~~------~r~~lr~~~~t~~~G~i~~v~~ 396 (396)
++||.+.|++++.+|+|+++| +||+|||.|+|+|+|+|+++.+
T Consensus 153 ~~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~ 201 (204)
T 3e1y_E 153 KQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVP 201 (204)
T ss_dssp CTTCEEEEEEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC
T ss_pred CCCCEEEEEEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEec
Confidence 999999999999999999997 7999999999999999999863
No 21
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=2.9e-34 Score=285.62 Aligned_cols=271 Identities=24% Similarity=0.294 Sum_probs=209.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhh------cCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecC
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKK------FGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCP 83 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~------~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtp 83 (396)
....+|+++||+|+|||||+++|+...... ...........|..+.|+++|+|+......+++.+..++|||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 457899999999999999999997432211 01111112346777889999999999888999999999999999
Q ss_pred ChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc--
Q psy15217 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY-- 161 (396)
Q Consensus 84 G~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~-- 161 (396)
||.+|...+..+++.+|++|+|+|+.++...|+..++..+...++|.+ +++||+|+...+. .+ ...++++.+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPii-vviNK~Dl~~~~~-~~-~l~ei~~~l~~~~~ 167 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIM-TFINKMDRDTRPS-IE-LLDEIESILRIHCA 167 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEE-EEEECTTSCCSCH-HH-HHHHHHHHHCCEEE
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEeCCCCccccH-HH-HHHHHHHhhCCCce
Confidence 999999999999999999999999999999999999999999999955 5689999975421 11 112232222110
Q ss_pred -----------------------------------------------------------------------------CCC
Q psy15217 162 -----------------------------------------------------------------------------EFP 164 (396)
Q Consensus 162 -----------------------------------------------------------------------------~~~ 164 (396)
-..
T Consensus 168 ~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 247 (528)
T 3tr5_A 168 PVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLK 247 (528)
T ss_dssp ESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHT
T ss_pred eeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhc
Confidence 001
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCC---------CCCceeEEEEEEEe--eC-CCceEEEE
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRA---------IDGAFLLPVEDVFS--IS-GRGTVVTG 232 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~---------~~~~~~~~i~~~~~--~~-~~G~v~~g 232 (396)
+..+|++++||+++ .|+.+|++++.+++|+|... .+.||...|+++.. .+ ++|++..+
T Consensus 248 ~~~~PV~~gSA~~~----------~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~ 317 (528)
T 3tr5_A 248 GELTPIFFGSAINN----------FGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFL 317 (528)
T ss_dssp TSEEEEEECBGGGT----------BSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEE
T ss_pred CceeEEEeccccCC----------ccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEE
Confidence 12348999999998 59999999999999987542 25788888888764 45 88999999
Q ss_pred EEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeEEecCC
Q psy15217 233 RVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (396)
Q Consensus 233 ~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (396)
||.||+|+.||.|+..+. +.+.+|.++... ++++++|.|||++++ .+ ..+++.||+||+..
T Consensus 318 RV~sG~l~~g~~v~~~~~--~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~--~~--l~~~~~GDtl~~~~ 382 (528)
T 3tr5_A 318 RIASGQYQKGMKAYHVRL--KKEIQINNALTFMAGKRENAEEAWPGDIIGL--HN--HGTIQIGDTFTQGE 382 (528)
T ss_dssp EEEESCEETTEEEEETTT--TEEEEESSCBCCBTTCSSCCSEECTTCEEEE--EE--SSSCCTTCEEESSC
T ss_pred EEecCeEcCCCEEEecCC--CceEEEeeeEEEeCCCeeECCEECCCCEEEE--cC--CCCCccCCEEcCCC
Confidence 999999999999998753 366778887653 578999999999987 33 24688999999754
No 22
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.7e-34 Score=298.25 Aligned_cols=269 Identities=26% Similarity=0.339 Sum_probs=192.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhc--CCccccccccCCChhHhhcCceEEeeeeEEeeC-------CeeEEEEe
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKF--GGEAKSYDQIDAAPEEKARGITINTAHIEYETK-------ARHYAHVD 81 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~--~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-------~~~~~iiD 81 (396)
...||+|+||+|||||||+.+|+....... +.......++|..+.|++||+|+..+...+.+. ++.++|||
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 468999999999999999999986543221 111222346999999999999999887776553 57899999
Q ss_pred cCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH--HHHHHHHHHHHHHHHh
Q psy15217 82 CPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEIRELLN 159 (396)
Q Consensus 82 tpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~--~~~~~~i~~~~~~~l~ 159 (396)
||||-+|..++.++++.+|+||+||||.+|++.||+..+..+...++|.++ +|||||+... ....+ ++...+.
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~-~iNKiDr~~a~~~~~~~----ei~~~l~ 166 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIV-YVNKMDRQGANFLRVVE----QIKKRLG 166 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEE-EEECSSSTTCCHHHHHH----HHHHHHC
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEE-EEccccccCccHHHHHH----Hhhhhcc
Confidence 999999999999999999999999999999999999999999999999665 6899998653 12222 2221111
Q ss_pred ----------------------------------------------------------------------------hcC-
Q psy15217 160 ----------------------------------------------------------------------------KYE- 162 (396)
Q Consensus 160 ----------------------------------------------------------------------------~~~- 162 (396)
...
T Consensus 167 ~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~ 246 (709)
T 4fn5_A 167 HTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGEL 246 (709)
T ss_dssp SCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCC
T ss_pred cceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCc
Confidence 000
Q ss_pred -------------CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCC--------------------CCC
Q psy15217 163 -------------FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN--------------------RAI 209 (396)
Q Consensus 163 -------------~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~--------------------~~~ 209 (396)
......|++..||+.+ .++..|++.+..++|.|. .+.
T Consensus 247 ~~~~~~~~l~~~~~~~~~~pv~~gsa~~~----------~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~ 316 (709)
T 4fn5_A 247 SEAEIKEGLRLRTLACEIVPAVCGSSFKN----------KGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADD 316 (709)
T ss_dssp CHHHHHHHHHHHHHTTSCEEEEECBTTTT----------BTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCT
T ss_pred cHHHHHHHHHHhhhhceeeeeeeeecccC----------CchHHHHHHHHhhCCCCcccccccccCCccccccccccCCc
Confidence 0113467888888876 588999999999999884 245
Q ss_pred CCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccC
Q psy15217 210 DGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTK 285 (396)
Q Consensus 210 ~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~ 285 (396)
++|+.+.|.++...+..|.+..+||.||+|+.||+|+... .+.+.++..+... +.++++|.||+.+++ .|++
T Consensus 317 ~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~--~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i--~Gl~ 392 (709)
T 4fn5_A 317 NEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSV--KGKKERVGRMVQMHANQREEIKEVRAGDIAAL--IGMK 392 (709)
T ss_dssp TSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTT--TCCCCBCCCEECCCSSCCCEESEECTTCEEEE--CSCS
T ss_pred cCcceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEec--CCcEEeecceeEeecceeeEeeeecCCCeeee--cCCC
Confidence 6899999999998999999999999999999999997643 2233445555433 478999999999988 5664
Q ss_pred ccCCCCCeEEecCCC
Q psy15217 286 REDVERGQVLAKPGS 300 (396)
Q Consensus 286 ~~~i~~G~vl~~~~~ 300 (396)
+++.|++|++.+.
T Consensus 393 --~~~~gdTl~~~~~ 405 (709)
T 4fn5_A 393 --DVTTGDTLCSIEK 405 (709)
T ss_dssp --SCCTTCEEECSSS
T ss_pred --cCccCCEecCCCc
Confidence 6899999997654
No 23
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=4.3e-33 Score=286.57 Aligned_cols=272 Identities=26% Similarity=0.329 Sum_probs=214.5
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhc--CCccccccccCCChhHhhcCceEEeeeeEEeeCC-------eeEEE
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKF--GGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-------RHYAH 79 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~--~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-------~~~~i 79 (396)
.+...||+++||+|||||||+++|+....... +........+|..+.|+++|+|+......+.+.+ +.++|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 35678999999999999999999986422111 0111123468899999999999998877777766 88999
Q ss_pred EecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q psy15217 80 VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (396)
Q Consensus 80 iDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~ 159 (396)
||||||.+|...+.++++.+|++|+|+|++++...|+.+++..+...++|.++ ++||+|+...+ ++.+.++++..+.
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~il-viNKiD~~~~~--~~~~~~~l~~~l~ 163 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIA-FVNKMDRMGAN--FLKVVNQIKTRLG 163 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEE-EEeCCCccccc--HHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999655 68999987642 1222223333221
Q ss_pred hcC--------------------------C--------------------------------------------------
Q psy15217 160 KYE--------------------------F-------------------------------------------------- 163 (396)
Q Consensus 160 ~~~--------------------------~-------------------------------------------------- 163 (396)
... |
T Consensus 164 ~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l 243 (704)
T 2rdo_7 164 ANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEEL 243 (704)
T ss_pred CCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCC
Confidence 100 0
Q ss_pred --------------CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC--------------------CC
Q psy15217 164 --------------PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR--------------------AI 209 (396)
Q Consensus 164 --------------~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~--------------------~~ 209 (396)
....+|+++.||+++ .|+..||+++..++|+|.. +.
T Consensus 244 ~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~ 313 (704)
T 2rdo_7 244 TEAEIKGALRQRVLNNEIILVTCGSAFKN----------KGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASD 313 (704)
T ss_pred CHHHHHHHHHHHHHhCCeeEEEEeecccC----------ccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCC
Confidence 012268889999886 5899999999999998754 14
Q ss_pred CCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccC
Q psy15217 210 DGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTK 285 (396)
Q Consensus 210 ~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~ 285 (396)
+.|+.+.|++++..++.|.+..+||.||+|+.||+|+..+. ..+.+|.++... +.++++|.|||++++. |++
T Consensus 314 ~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~--~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~--gl~ 389 (704)
T 2rdo_7 314 DEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVK--AARERFGRIVQMHANKREEIKEVRAGDIAAAI--GLK 389 (704)
T ss_pred CCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCC--CcEEEeceEEEEeCCCceEcceeCCCCEEEEe--Ccc
Confidence 67999999999999999999999999999999999997643 355678877654 5789999999999995 553
Q ss_pred ccCCCCCeEEecCC
Q psy15217 286 REDVERGQVLAKPG 299 (396)
Q Consensus 286 ~~~i~~G~vl~~~~ 299 (396)
++++||+|++++
T Consensus 390 --~~~~GdTl~~~~ 401 (704)
T 2rdo_7 390 --DVTTGDTLCDPD 401 (704)
T ss_pred --cCccCCEEeCCC
Confidence 579999999765
No 24
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=3e-34 Score=285.81 Aligned_cols=272 Identities=22% Similarity=0.288 Sum_probs=194.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcC------CccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecC
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFG------GEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCP 83 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~------~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtp 83 (396)
+..++|+++||+|||||||+++|+........ ........+|..+.|+++|+|+......+++.+..++|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 46799999999999999999999864221110 001113357888899999999998888899999999999999
Q ss_pred ChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh---
Q psy15217 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK--- 160 (396)
Q Consensus 84 G~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~--- 160 (396)
||.+|...+.+++..+|++|+|+|+.++...|+.+++..+...++| +++++||+|+...+. ..+..++++.+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~--~~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP--MELLDEVENELKIGCA 167 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH--HHHHHHHHHHHCCEEE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH--HHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999999999999999999 555789999976421 1111223322210
Q ss_pred -------------------------c----CC------------------------------------------------
Q psy15217 161 -------------------------Y----EF------------------------------------------------ 163 (396)
Q Consensus 161 -------------------------~----~~------------------------------------------------ 163 (396)
+ +.
T Consensus 168 ~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~ 247 (529)
T 2h5e_A 168 PITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFL 247 (529)
T ss_dssp ESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred ceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHH
Confidence 0 00
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCC---------CCCceeEEEEEEEe---eCCCceEEE
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRA---------IDGAFLLPVEDVFS---ISGRGTVVT 231 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~---------~~~~~~~~i~~~~~---~~~~G~v~~ 231 (396)
.+..+|+++.||+++ .|+.+|++++.+++|+|... .+.||.+.|.++.. .+++|+++.
T Consensus 248 ~~~~~Pv~~gSA~~~----------~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~ 317 (529)
T 2h5e_A 248 AGEITPVFFGTALGN----------FGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAF 317 (529)
T ss_dssp TTSEEEEEECBTTTT----------BSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEE
T ss_pred hCceeEEEeeecccC----------CCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEE
Confidence 012358888898886 58999999999999987542 14678777766643 345899999
Q ss_pred EEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeEEecCCC
Q psy15217 232 GRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300 (396)
Q Consensus 232 g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~ 300 (396)
|||.||+|+.||.|++.+. +.+.+|.++..+ ++++++|.|||++++ .++ .+++.||+|+++++
T Consensus 318 ~RV~sG~l~~g~~v~~~~~--~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~~~~Gdtl~~~~~ 384 (529)
T 2h5e_A 318 MRVVSGKYEKGMKLRQVRT--AKDVVISDALTFMAGDRSHVEEAYPGDILGL--HNH--GTIQIGDTFTQGEM 384 (529)
T ss_dssp EEEEESCEETTCEEEETTT--TEEEECSCEECCCC-----CCEECTTCEEEE--CCS--SCCCTTCEEESSCC
T ss_pred EEEecCeEcCCCEEEEeeC--CCEEEeceeeEEeCCCceEcceECCCCEEEE--ecc--CCCccCCEeecCCc
Confidence 9999999999999998763 357788899865 678999999999988 433 56889999998653
No 25
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=4.7e-37 Score=313.31 Aligned_cols=269 Identities=24% Similarity=0.316 Sum_probs=211.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcC--CccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFG--GEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
..||+|+||+|||||||+.+|+........ ........+|..+.|++||+|+.++...++++++.++|||||||.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 579999999999999999999865543221 112234569999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH--HHHHHHHHHHH-------------
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEI------------- 154 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~--~~~~~~i~~~~------------- 154 (396)
.++.++++.+|+||+||||.+|++.||+.++.++...++|.++ ++||||+... ....+.+.+.+
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~-~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~ 160 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIF-FINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELY 160 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEE-CCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEE-EEeccccccCCHHHHHHHHHHHhCCCccccceeEee
Confidence 9999999999999999999999999999999999999999766 5899998653 22222221100
Q ss_pred -------------------------HHHHhhcCC--------------CCCCCeEEEecccccccCCCCCCCCCcHHHHH
Q psy15217 155 -------------------------RELLNKYEF--------------PGNDIPIIKGSAKLALEGDTGPLGEQSILSLS 195 (396)
Q Consensus 155 -------------------------~~~l~~~~~--------------~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll 195 (396)
..++..-.+ ...-.|++..||+++ .|+..|+
T Consensus 161 ~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LL 230 (638)
T 3j25_A 161 PNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSN----------IGIDNLI 230 (638)
T ss_dssp GGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTC----------CSHHHHH
T ss_pred ccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccC----------CCchhHh
Confidence 011100000 012368888999886 5899999
Q ss_pred HHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCee
Q psy15217 196 KALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQG 271 (396)
Q Consensus 196 ~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a 271 (396)
+++.+++|+|....+.|+.+.|.++...++.|.+..+||.||+|+.||.|++.... +.++..+... ..++++|
T Consensus 231 d~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~---~~~v~~l~~~~g~~~~~v~~a 307 (638)
T 3j25_A 231 EVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKE---KIKVTEMYTSINGELCKIDRA 307 (638)
T ss_dssp HHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCC---CSSBCCCCSSCCCCBSCCCTT
T ss_pred hhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCc---ceeEEeeeccccccccccccc
Confidence 99999999998888899999999998889999999999999999999999875322 2234333322 4678999
Q ss_pred ecCCeEEEEecccCccCCCCCeEEecCC
Q psy15217 272 QAGDNIGLLLRGTKREDVERGQVLAKPG 299 (396)
Q Consensus 272 ~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (396)
.|||++++ .+ ..++.|+++++..
T Consensus 308 ~aGdIv~i--~g---~~~~~~~tl~d~~ 330 (638)
T 3j25_A 308 YSGEIVIL--QN---EFLKLNSVLGDTK 330 (638)
T ss_dssp BCCCCSCC--CS---SSCSSEECSSSSS
T ss_pred ccceEEEE--ec---cccccCceecCCC
Confidence 99999876 33 4577788888664
No 26
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=3.9e-32 Score=279.16 Aligned_cols=274 Identities=26% Similarity=0.320 Sum_probs=200.2
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhc--CCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKF--GGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~--~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~ 85 (396)
..+...+|+++||+|||||||+++|+....... +........+|..+.|+++|+|+......+.+.+..++|||||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~ 87 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGH 87 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCc
Confidence 345688999999999999999999985432111 000111245788999999999999888888888999999999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc----
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY---- 161 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~---- 161 (396)
.+|...+.+++..+|++|+|+|+.++...|+.+++..+...++|.++ ++||+|+...+ .+.+.+++++.+...
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~iv-viNKiD~~~~~--~~~~~~~l~~~l~~~~~~~ 164 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA-FANKMDKTGAD--LWLVIRTMQERLGARPVVM 164 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEE-EEECTTSTTCC--HHHHHHHHHHTTCCCEEEC
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEE-EEECCCcccCC--HHHHHHHHHHHhCCCccce
Confidence 99999999999999999999999999999999999999999999555 68999997642 112222333332210
Q ss_pred -----------------------------------------------------------------------C--------
Q psy15217 162 -----------------------------------------------------------------------E-------- 162 (396)
Q Consensus 162 -----------------------------------------------------------------------~-------- 162 (396)
.
T Consensus 165 ~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~ 244 (691)
T 1dar_A 165 QLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVA 244 (691)
T ss_dssp EEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHH
T ss_pred eccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHH
Confidence 0
Q ss_pred ------CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC------------------CCCCceeEEEE
Q psy15217 163 ------FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR------------------AIDGAFLLPVE 218 (396)
Q Consensus 163 ------~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~------------------~~~~~~~~~i~ 218 (396)
.....+|+++.||+++ .|+..|++++..++|+|.. +.+.|+.+.|+
T Consensus 245 ~~~~~~~~~~~~Pv~~gSA~~~----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vf 314 (691)
T 1dar_A 245 AIRKGTIDLKITPVFLGSALKN----------KGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAF 314 (691)
T ss_dssp HHHHHHHTTSCEEEEECBGGGT----------BSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEE
T ss_pred HHHHHHHhCcEeEEEEeecccC----------cCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEE
Confidence 0011268999999987 5899999999999998864 25789999999
Q ss_pred EEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeE
Q psy15217 219 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQV 294 (396)
Q Consensus 219 ~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~v 294 (396)
+++..++.|.+..+||.+|+|+.||+|+..+ ...+.+|..+... +.++++|.|||++++. |++ +++.||+
T Consensus 315 k~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~--~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl~--~~~~Gdt 388 (691)
T 1dar_A 315 KIMADPYVGRLTFIRVYSGTLTSGSYVYNTT--KGRKERVARLLRMHANHREEVEELKAGDLGAVV--GLK--ETITGDT 388 (691)
T ss_dssp EEEEETTTEEEEEEEEEESEEESSCEEEETT--TTEEEECCEEEEECSSCEEEESEEETTCEEEEE--CCS--SCCTTCE
T ss_pred EEEEcCCCCcEEEEEEeeeeEecCCEEEecC--CCcEEEEceEEEEeCCCceEcceecCCCEEEEe--Ccc--cCccCCE
Confidence 9999999999999999999999999999753 3355677776653 5789999999999995 554 5788999
Q ss_pred EecCCC
Q psy15217 295 LAKPGS 300 (396)
Q Consensus 295 l~~~~~ 300 (396)
|++.+.
T Consensus 389 l~~~~~ 394 (691)
T 1dar_A 389 LVGEDA 394 (691)
T ss_dssp EEETTC
T ss_pred EecCCC
Confidence 997654
No 27
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=1.3e-35 Score=294.02 Aligned_cols=255 Identities=27% Similarity=0.309 Sum_probs=199.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee-CCeeEEEEecCChhhhH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KARHYAHVDCPGHADYI 89 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~ 89 (396)
...+|+++||+|+|||||+++|++...... ...|+|.+.....+.. .+..++|||||||++|.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~----------------~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~ 66 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM----------------EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS 66 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS----------------SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc----------------cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH
Confidence 357899999999999999999987543221 1236777666555655 45689999999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 169 (396)
.++.+++..+|+++||+|++++..+|+.+|+..+...++| +||++||+|+.+.+. +.+..++..+.......+..+|
T Consensus 67 ~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~--~~v~~~l~~~~~~~e~~~~~~~ 143 (537)
T 3izy_P 67 AMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKAEADP--EKVKKELLAYDVVCEDYGGDVQ 143 (537)
T ss_dssp TSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSC--CSSSSHHHHTTSCCCCSSSSEE
T ss_pred HHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEecccccccch--HHHHHHHHhhhhhHHhcCCCce
Confidence 9999999999999999999999999999999999999999 566789999975411 0111122221111111113579
Q ss_pred EEEecccccccCCCCCCCCCcHHHHHHHhhhhCC--CCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEE
Q psy15217 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP--TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEI 247 (396)
Q Consensus 170 ~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~--~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~ 247 (396)
++++||++| .|+.+|++++...++ .+..+.+.|++++|.+++..++.|++++|+|.+|+|++||.+..
T Consensus 144 iv~vSAktG----------~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~ 213 (537)
T 3izy_P 144 AVHVSALTG----------ENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVA 213 (537)
T ss_dssp ECCCCSSSS----------CSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECC
T ss_pred EEEEECCCC----------CCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEe
Confidence 999999998 589999999877543 34445678999999999999999999999999999999999853
Q ss_pred eecCCceeEEEEEEEecc-eeeCeeecCCeEEEEecccCccCCCCCeEEecCCCC
Q psy15217 248 IGIKDTVKTTCTGVEMFR-KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 301 (396)
Q Consensus 248 ~p~~~~~~~~v~si~~~~-~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~ 301 (396)
+ ....+|++++.++ .++++|.||+.|++ .|++ ....+||+++..++.
T Consensus 214 g----~~~~kVr~i~~~~g~~v~~A~~G~~V~i--~g~~-~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 214 G----KSWAKVRLMFDENGRAVNEAYPSMPVGI--IGWR-DLPSAGDEILEVESE 261 (537)
T ss_dssp S----SCCEEEEEEEECCCCCSCCSCCSTTCCC--CSSE-EEEEEESSCCSCCSS
T ss_pred C----CceEEEEEEEcCCCCCCcEEcCCCEEEE--ECCC-CCCCCCCEEEecCCh
Confidence 2 2347899999886 78999999999988 4655 345899999977654
No 28
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=2.1e-32 Score=280.34 Aligned_cols=269 Identities=23% Similarity=0.273 Sum_probs=214.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhc-CCc-cccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKF-GGE-AKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~-~~~-~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
++..+|+++||+|||||||+++|++...... .+. .......|..+.|+++|+|+......+......++|||||||.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 4578999999999999999999996543211 111 11234578889999999999888778888889999999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh--------
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN-------- 159 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~-------- 159 (396)
|...+..+++.+|++++|+|+.+|...|+++++..+...++|.++ ++||+|+. .. ...+.+++.+.+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~il-v~NKiD~~-~~--~~~~~~~l~~~l~~~~~~~~P 162 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMV-VVTKLDKG-GD--YYALLEDLRSTLGPILPIDLP 162 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEE-EEECGGGC-CC--HHHHHHHHHHHHCSEEECEEE
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEE-EecCCchh-hh--HHHHHHHHHHHhCCcceEEee
Confidence 999999999999999999999999999999999999999999665 68999987 31 1112222333222
Q ss_pred ---------------------------------------------------------------hcCC-------------
Q psy15217 160 ---------------------------------------------------------------KYEF------------- 163 (396)
Q Consensus 160 ---------------------------------------------------------------~~~~------------- 163 (396)
...+
T Consensus 163 i~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~ 242 (665)
T 2dy1_A 163 LYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAV 242 (665)
T ss_dssp EEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred ecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 0000
Q ss_pred -CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCCC-CCCceeEEEEEEEeeCCCceEEEEEEEeeEEec
Q psy15217 164 -PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRA-IDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241 (396)
Q Consensus 164 -~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~~-~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~ 241 (396)
....+|++++||+++ .|+.+|++++..++|+|... .++|+.+.|.+++..++.|+++.|||.+|+|++
T Consensus 243 ~~~~~~pv~~~SA~~~----------~Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~ 312 (665)
T 2dy1_A 243 RRGLLYPVALASGERE----------IGVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKP 312 (665)
T ss_dssp HTTSCEEEEECBTTTT----------BSHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECT
T ss_pred HhCCeeEEEEeecccC----------cCHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEec
Confidence 012268999999987 58999999999999988654 678999999999999999999999999999999
Q ss_pred CCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeEEecCCC
Q psy15217 242 GEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300 (396)
Q Consensus 242 g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~ 300 (396)
||.|+..+ ...+|.+|... +.++++|.|||++++ .+++ ++++||+|++.+.
T Consensus 313 g~~v~~~~----~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i--~gl~--~~~~Gdtl~~~~~ 367 (665)
T 2dy1_A 313 GDSLQSEA----GQVRLPHLYVPMGKDLLEVEEAEAGFVLGV--PKAE--GLHRGMVLWQGEK 367 (665)
T ss_dssp TEEEBCTT----SCEEESSEEEEETTEEEEESCEETTCEEEE--SSCT--TCCTTCEEESSSC
T ss_pred CCEEEcCC----CeEEEeEEEEEeCCCeeECCEECCCCEEEE--eCCc--cCccCCEEecCCC
Confidence 99998754 45677777653 568999999999999 3543 6889999997653
No 29
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=2.9e-34 Score=282.12 Aligned_cols=249 Identities=27% Similarity=0.297 Sum_probs=195.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
...+|+++||+|||||||+++|++..... ...+|+|++.....++++++.++|||||||++|..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~----------------~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~ 66 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVAS----------------GEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS 66 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSB----------------TTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcc----------------ccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH
Confidence 45789999999999999999998643211 11257888877777778888999999999999999
Q ss_pred HHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC----CC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP----GN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~----~~ 166 (396)
++.+++..+|+++||+|+++|.++||++|+..+...++| +|+++||+|+.+++. + .+...+...++. +.
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~--~----~v~~~l~~~~~~~~~~~~ 139 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADP--D----RVKNELSQYGILPEEWGG 139 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCC--C----CTTCCCCCCCCCTTCCSS
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEeccccccCH--H----HHHHHHHHhhhhHHHhCC
Confidence 999999999999999999999999999999999999999 666789999976421 0 111111111111 12
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC--CCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCE
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI--PTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEE 244 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l--~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~ 244 (396)
.+|++++||++| .|+.+|++++.... ..+..+.+.|+.+.|.+++..++.|++++|+|.+|+|++||.
T Consensus 140 ~~~~v~vSAktG----------~gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~ 209 (501)
T 1zo1_I 140 ESQFVHVSAKAG----------TGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDI 209 (501)
T ss_dssp SCEEEECCTTTC----------TTCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCE
T ss_pred CccEEEEeeeec----------cCcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCE
Confidence 479999999998 58889999987542 233345677889999999999999999999999999999999
Q ss_pred EEEeecCCceeEEEEEEEec-ceeeCeeecCCeEEEEecccCccCCCCCeEEecCC
Q psy15217 245 LEIIGIKDTVKTTCTGVEMF-RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (396)
Q Consensus 245 v~~~p~~~~~~~~v~si~~~-~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (396)
+.+++ ...+|++++.. ..++++|.||+.|.+. |++ .....|++++...
T Consensus 210 v~~g~----~~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~-~~~~~Gd~~~~~~ 258 (501)
T 1zo1_I 210 VLCGF----EYGRVRAMRNELGQEVLEAGPSIPVEIL--GLS-GVPAAGDEVTVVR 258 (501)
T ss_dssp EEEEB----SSCEEEEECCTTTTSEEEECCSSCSSSE--EEC-SCCCTTEEEEEEC
T ss_pred EEEcc----ceeEEEEEEecCCCcCcEeccCCcEEEe--CCC-CCCCCCCEEEecC
Confidence 98865 23589999854 5789999999998874 443 1247899997543
No 30
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3e-31 Score=272.66 Aligned_cols=272 Identities=25% Similarity=0.328 Sum_probs=200.4
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcC--CccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFG--GEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~ 86 (396)
.+...+|+++||+|+|||||+++|+........ ........+|..+.|+++|+|+......+.+.+..++|||||||.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 355789999999999999999999864322110 001112357888899999999998888888889999999999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc-----
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY----- 161 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~----- 161 (396)
+|...+..++..+|++|+|+|+.++...++..++..+...++|.++ ++||+|+...+ .+.+.+++++.+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~il-viNK~Dl~~~~--~~~~~~~l~~~l~~~~~~~~ 163 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIV-FVNKMDKLGAN--FEYSVSTLHDRLQANAAPIQ 163 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEE-EEECTTSTTCC--HHHHHHHHHHHHCCCEEESE
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEE-EEECCCccccc--hHHHHHHHHHHhCCCceeEE
Confidence 9999999999999999999999999999999999999999999555 68999998642 112222333333210
Q ss_pred ---------------------CCC--------------------------------------------------------
Q psy15217 162 ---------------------EFP-------------------------------------------------------- 164 (396)
Q Consensus 162 ---------------------~~~-------------------------------------------------------- 164 (396)
.|+
T Consensus 164 ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~ 243 (693)
T 2xex_A 164 LPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEA 243 (693)
T ss_dssp EEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHH
T ss_pred eecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHH
Confidence 000
Q ss_pred -------CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC--------------------CCCCceeEEE
Q psy15217 165 -------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR--------------------AIDGAFLLPV 217 (396)
Q Consensus 165 -------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~--------------------~~~~~~~~~i 217 (396)
...+|+++.||+++ .|+..|++.+..++|+|.. +.++||.+.|
T Consensus 244 l~~~~~~~~~~Pv~~gSA~~~----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~V 313 (693)
T 2xex_A 244 IRQATTNVEFYPVLCGTAFKN----------KGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALA 313 (693)
T ss_dssp HHHHHHTTSCEEEEECBTTTT----------BSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEE
T ss_pred HHHHHHhCCeeeEEEeecccC----------cCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEE
Confidence 01258889999886 5899999999999998854 2568999999
Q ss_pred EEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCe
Q psy15217 218 EDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQ 293 (396)
Q Consensus 218 ~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~ 293 (396)
++++..++.|.+..+||.||+|+.||+|+... ...+.+|..+... +.++++|.|||++++. |++ +++.||
T Consensus 314 fK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~--~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl~--~~~~Gd 387 (693)
T 2xex_A 314 FKVMTDPYVGKLTFFRVYSGTMTSGSYVKNST--KGKRERVGRLLQMHANSRQEIDTVYSGDIAAAV--GLK--DTGTGD 387 (693)
T ss_dssp EEEEEETTTEEEEEEEEEESEEETTEEEEETT--TTEEEEECCEEEECSSCEEECSEEETTCEEEEE--SCS--SCCTTC
T ss_pred EEeeecCCCceEEEEEEEeeeEecCCEEEecC--CCceEEeceEEEEeCCCceEccccCcCCEEEEe--Ccc--cCccCC
Confidence 99999999999999999999999999998653 3456778777654 4789999999999995 553 578899
Q ss_pred EEecCC
Q psy15217 294 VLAKPG 299 (396)
Q Consensus 294 vl~~~~ 299 (396)
+|++.+
T Consensus 388 Tl~~~~ 393 (693)
T 2xex_A 388 TLCGEK 393 (693)
T ss_dssp EEEETT
T ss_pred EEecCC
Confidence 999765
No 31
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=7e-32 Score=271.51 Aligned_cols=259 Identities=27% Similarity=0.284 Sum_probs=190.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEe------------------e
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE------------------T 72 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~------------------~ 72 (396)
...+|+++||+|||||||+++|++....... .+|+|.......+. .
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e----------------~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~ 67 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE----------------AGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC--------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcccc----------------CCceecccCeEEEeechhhhhcccccccccccc
Confidence 4579999999999999999999865321100 02333332211111 1
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH---------
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--------- 143 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~--------- 143 (396)
....++|||||||++|...+.+++..+|++|+|+|+++|.++||.+++..+...++| +++++||||+.+.
T Consensus 68 ~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP-iIVViNKiDl~~~~~~~~~~~~ 146 (594)
T 1g7s_A 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDRIHGWRVHEGRPF 146 (594)
T ss_dssp TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSTTCCCCTTCCH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCe-EEEEecccccccccccccCCch
Confidence 122589999999999998888889999999999999999999999999999999999 5557899999641
Q ss_pred --------HH---HHHHHHHHHHHHHhhcCCC----------CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 144 --------EE---LLELVEIEIRELLNKYEFP----------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 144 --------~~---~~~~i~~~~~~~l~~~~~~----------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+. .+.....++.+.+...++. ...+|++++||++| .|+.+|++++...+
T Consensus 147 ~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG----------~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 147 METFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG----------EGIPELLTMLMGLA 216 (594)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC----------CCchhHHHHHHhhc
Confidence 11 1112222334444443432 23569999999998 68999999998765
Q ss_pred CCC-----CCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEec------------c
Q psy15217 203 PTP-----NRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF------------R 265 (396)
Q Consensus 203 ~~~-----~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~------------~ 265 (396)
+.+ ..+.+.|+++.|.+++..++.|++++++|.+|+|++||.|.++|.+....++|++|... .
T Consensus 217 ~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~ 296 (594)
T 1g7s_A 217 QQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKF 296 (594)
T ss_dssp HHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSE
T ss_pred cccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCc
Confidence 422 12457899999999999999999999999999999999999987654456789998753 3
Q ss_pred eeeCeee--cCCeEEEEecccCccCCCCCeEEecCCC
Q psy15217 266 KLLDQGQ--AGDNIGLLLRGTKREDVERGQVLAKPGS 300 (396)
Q Consensus 266 ~~~~~a~--~G~~v~l~l~~~~~~~i~~G~vl~~~~~ 300 (396)
.++++|. +|+.+++ .++ .++..|+.|+..++
T Consensus 297 ~~v~ea~~~aG~~v~~--~~l--~~~~~Gd~l~~~~~ 329 (594)
T 1g7s_A 297 QKVDEVVAAAGIKIVA--PGI--DDVMAGSPLRVVTD 329 (594)
T ss_dssp EECSEEESSEEEEEEC--SSC--TTBCTTCEEEECSS
T ss_pred eEccEEcCCCCcEEEE--ccc--CCCCCCCEEEecCC
Confidence 5788888 6655544 433 45689999987653
No 32
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.97 E-value=3e-29 Score=262.70 Aligned_cols=288 Identities=24% Similarity=0.297 Sum_probs=197.3
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--------------
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-------------- 73 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-------------- 73 (396)
.....+||+++||+|||||||+++|+................+|..+.|+++|+|+......+.+.
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 344578999999999999999999987543222111112245788899999999997765544433
Q ss_pred --CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC------CHHH
Q psy15217 74 --ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV------DDEE 145 (396)
Q Consensus 74 --~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~------~~~~ 145 (396)
+..++|||||||.+|...+..+++.+|++|+|+|+.+|...|+..++..+...++|.+ +++||+|+. ++++
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~i-lviNK~D~~~~e~~~~~~e 173 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPV-VVINKVDRALLELQVSKED 173 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEE-EEEECHHHHHHTSCCCHHH
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeE-EEEECCCcchhhhccCHHH
Confidence 5778999999999999999999999999999999999999999999988888899955 568999986 2333
Q ss_pred H---HHHHHHHHHHHHhh--------cCCCCCCCeEEEecccccccC---------------C------CCC---CC---
Q psy15217 146 L---LELVEIEIRELLNK--------YEFPGNDIPIIKGSAKLALEG---------------D------TGP---LG--- 187 (396)
Q Consensus 146 ~---~~~i~~~~~~~l~~--------~~~~~~~~~~i~~Sa~~g~~~---------------~------~~~---~~--- 187 (396)
. ++.+..+++..+.. +.+.+...++...|+++|+.- . ..| |.
T Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~ 253 (842)
T 1n0u_A 174 LYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPK 253 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETT
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCC
Confidence 2 23333445555432 113222346777888765320 0 012 00
Q ss_pred --------------------------------------------------CCc------------------------HHH
Q psy15217 188 --------------------------------------------------EQS------------------------ILS 193 (396)
Q Consensus 188 --------------------------------------------------~~~------------------------~~~ 193 (396)
+.. +..
T Consensus 254 ~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~ 333 (842)
T 1n0u_A 254 TKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADA 333 (842)
T ss_dssp TTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHH
T ss_pred CCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHH
Confidence 000 277
Q ss_pred HHHHhhhhCCCCC-------------------------CCCCCceeEEEEEEEeeCCCce-EEEEEEEeeEEecCCEEEE
Q psy15217 194 LSKALDTYIPTPN-------------------------RAIDGAFLLPVEDVFSISGRGT-VVTGRVERGIVRVGEELEI 247 (396)
Q Consensus 194 Ll~~l~~~l~~~~-------------------------~~~~~~~~~~i~~~~~~~~~G~-v~~g~v~~G~l~~g~~v~~ 247 (396)
||+++..++|+|. .+.++|+.+.|.+++..+..|. +..+||.||+|+.||.|.+
T Consensus 334 LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v 413 (842)
T 1n0u_A 334 LLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRI 413 (842)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEE
T ss_pred HHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEe
Confidence 8899999999874 1356899999999999899995 9999999999999999987
Q ss_pred eecC----Cce---eEEEEEEEec----ceeeCeeecCCeEEEEecccCccCCCCCeEEecCC
Q psy15217 248 IGIK----DTV---KTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (396)
Q Consensus 248 ~p~~----~~~---~~~v~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (396)
...+ ... +.+|..|... +.++++|.|||++++ .|++...++.| +||+.+
T Consensus 414 ~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai--~gl~~~~~~t~-Tl~~~~ 473 (842)
T 1n0u_A 414 QGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGL--VGIDQFLLKTG-TLTTSE 473 (842)
T ss_dssp ECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEE--ESCTTTCCSSE-EEESCT
T ss_pred ccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEE--Eccccceecce-eecCCC
Confidence 6322 112 4677777655 478999999999888 56654434445 888654
No 33
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.85 E-value=1.3e-20 Score=167.50 Aligned_cols=172 Identities=17% Similarity=0.201 Sum_probs=117.2
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEe-eCCeeEEEEecCCh--
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE-TKARHYAHVDCPGH-- 85 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~~~iiDtpG~-- 85 (396)
....++|+++|+.|+|||||+++|++.... . ......|.|.+.....+. ..+..+.||||||+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~-----~---------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRL-----A---------FASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGY 91 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSS-----S---------CTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCS
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcc-----e---------eecCCCCcccceEEEEecCCCCCcEEEEcCCCCCc
Confidence 345789999999999999999999864200 0 001122455555545554 45678999999995
Q ss_pred --------hhhHH---HHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHH
Q psy15217 86 --------ADYIK---NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEI 154 (396)
Q Consensus 86 --------~~~~~---~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~ 154 (396)
+.|.. ........+|++++|+|+.++......+.+..+...++|. ++|+||+|+.+..+..+ ...++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~-i~v~nK~Dl~~~~~~~~-~~~~~ 169 (223)
T 4dhe_A 92 AEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPI-HSLLTKCDKLTRQESIN-ALRAT 169 (223)
T ss_dssp SCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCE-EEEEECGGGSCHHHHHH-HHHHH
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCE-EEEEeccccCChhhHHH-HHHHH
Confidence 33333 3344444588999999999988888888888888888995 45689999998644322 22334
Q ss_pred HHHHhhc---CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCCC
Q psy15217 155 RELLNKY---EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR 207 (396)
Q Consensus 155 ~~~l~~~---~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~~ 207 (396)
.+.+..+ +. ....+++++||+++ .|+.+|+++|.+.++.+..
T Consensus 170 ~~~l~~~~~~~~-~~~~~~~~~SA~~g----------~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 170 QKSLDAYRDAGY-AGKLTVQLFSALKR----------TGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp HHHHHHHHHHTC-CSCEEEEEEBTTTT----------BSHHHHHHHHHHHHC----
T ss_pred HHHHHhhhhccc-CCCCeEEEeecCCC----------cCHHHHHHHHHHhcCccCC
Confidence 4444432 00 12478999999997 6899999999998876543
No 34
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.83 E-value=6.6e-20 Score=171.16 Aligned_cols=164 Identities=20% Similarity=0.216 Sum_probs=119.4
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC-CeeEEEEecCChh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-ARHYAHVDCPGHA 86 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~ 86 (396)
.+.+.-.|+++|++|+|||||+++|++...... ....+.|.......+..+ +..+.||||||+.
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~---------------s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~ 70 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII---------------SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIY 70 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC---------------CSSSCCCCSCEEEEEEETTTEEEEEEECCCCC
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCcccc---------------CCCCCceeeEEEEEEecCCCCeEEEEECcCCC
Confidence 445677999999999999999999986532111 112245554444555666 8899999999984
Q ss_pred ----------hhHHHHHhhhhcCCEEEEEEecCCCCChhHHHH-HHHHHHcCCCeEEEEEeccCCC-CHHHHHHHHHHHH
Q psy15217 87 ----------DYIKNMITGAAQMDGAILVCSAADGPMPQTREH-ILLARQVGVPYIVVFLNKADMV-DDEELLELVEIEI 154 (396)
Q Consensus 87 ----------~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~-l~~~~~~~ip~iIvviNK~D~~-~~~~~~~~i~~~~ 154 (396)
.+...+...+..+|++++|+|++++...++... +..+...++|.+ +++||+|+. +.+... . .+
T Consensus 71 ~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvi-lV~NK~Dl~~~~~~~~-~---~~ 145 (308)
T 3iev_A 71 EPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVI-VVINKIDKIGPAKNVL-P---LI 145 (308)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEE-EEEECGGGSSSGGGGH-H---HH
T ss_pred ccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEE-EEEECccCCCCHHHHH-H---HH
Confidence 345667778889999999999999888888777 777777888954 568999998 443222 2 23
Q ss_pred HHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 155 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
..+.+.++ ...+++++||++| .|+.+|++.+.+.++.
T Consensus 146 ~~l~~~~~---~~~~i~~vSA~~g----------~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 146 DEIHKKHP---ELTEIVPISALKG----------ANLDELVKTILKYLPE 182 (308)
T ss_dssp HHHHHHCT---TCCCEEECBTTTT----------BSHHHHHHHHHHHSCB
T ss_pred HHHHHhcc---CCCeEEEEeCCCC----------CCHHHHHHHHHHhCcc
Confidence 33333332 1367999999997 6899999999998864
No 35
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.83 E-value=3.1e-20 Score=181.80 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=108.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh----
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH---- 85 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~---- 85 (396)
...++|+++|++|+|||||+++|++.... ..+...|+|.+.....++.++..+.||||||+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~---------------~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~ 237 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERV---------------IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKG 237 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTE---------------EEC---------CCEEEEETTEEEEETTHHHHTCBT
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCce---------------eecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCc
Confidence 35689999999999999999999864211 11223478888777778888889999999998
Q ss_pred ------hhhHHH-HHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHH-HHHHHHHHHHHH
Q psy15217 86 ------ADYIKN-MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEE-LLELVEIEIREL 157 (396)
Q Consensus 86 ------~~~~~~-~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~-~~~~i~~~~~~~ 157 (396)
+.|... +..++..+|++++|+|++++...|+.+++..+...++| +++|+||+|+.+... ..+...+++.+.
T Consensus 238 ~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~ 316 (436)
T 2hjg_A 238 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDH 316 (436)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCTTHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCc-EEEEEECccCCCcchHHHHHHHHHHHHh
Confidence 666544 34577889999999999999999999888888888888 555789999986422 223344455555
Q ss_pred HhhcCCCCCCCeEEEeccccccc
Q psy15217 158 LNKYEFPGNDIPIIKGSAKLALE 180 (396)
Q Consensus 158 l~~~~~~~~~~~~i~~Sa~~g~~ 180 (396)
+.... ..|++++||++|.+
T Consensus 317 l~~~~----~~~~~~~SA~tg~~ 335 (436)
T 2hjg_A 317 FQFLD----YAPILFMSALTKKR 335 (436)
T ss_dssp CGGGT----TSCEEECCTTTCTT
T ss_pred cccCC----CCCEEEEecccCCC
Confidence 54443 37899999999853
No 36
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=7.3e-21 Score=162.72 Aligned_cols=161 Identities=32% Similarity=0.389 Sum_probs=116.7
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
.+..++|+++|..|+|||||+++|++...... ...+++.+.....+..++..+.+|||||+++|
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 68 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ----------------EAGGITQHIGAYQVTVNDKKITFLDTPGHEAF 68 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCS----------------SCCSSSTTCCCCEEEETTEEEEESCCCSSSSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccC----------------CCCceeEeeeEEEEEeCCceEEEEECCCCHHH
Confidence 34678999999999999999999986421110 01123333334455667788999999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC---
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG--- 165 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~--- 165 (396)
...+...+..+|++++|+|++++...++.+.+..+...++| +++++||+|+.+... +. +...+.......
T Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~~--~~----~~~~~~~~~~~~~~~ 141 (178)
T 2lkc_A 69 TTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMDKPEANP--DR----VMQELMEYNLVPEEW 141 (178)
T ss_dssp SCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTSSCSCH--HH----HHHHHTTTTCCBTTT
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccCCcCCH--HH----HHHHHHhcCcChhHc
Confidence 87777778899999999999998889999988888778899 455689999986411 11 222222222111
Q ss_pred -CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 166 -NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 166 -~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
...+++++||+++ .++.+++++|.+.+
T Consensus 142 ~~~~~~~~~Sa~~~----------~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 142 GGDTIFCKLSAKTK----------EGLDHLLEMILLVS 169 (178)
T ss_dssp TSSEEEEECCSSSS----------HHHHHHHHHHHHHH
T ss_pred CCcccEEEEecCCC----------CCHHHHHHHHHHhh
Confidence 1268999999997 58999999887654
No 37
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.83 E-value=8e-20 Score=153.45 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=110.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh-----
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD----- 87 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~----- 87 (396)
.+|+++|+.|+|||||+++|.+..... .+...+.|.+.....++.++..+.+|||||+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 66 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV---------------VADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWE 66 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEETTEEEEEEECGGGCSSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee---------------ccCCCCceecceEEEEEeCCceEEEEECCCCCCccchH
Confidence 589999999999999999998642110 111234555555566677788999999999887
Q ss_pred --hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 88 --YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 88 --~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
+...+...+..+|++++|+|++++...........+...++| +++++||+|+.+.++ ++.++. .+++
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~-------~~~~~~-~~~~-- 135 (161)
T 2dyk_A 67 KKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDDPKHEL-------YLGPLY-GLGF-- 135 (161)
T ss_dssp HHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCSGGGGG-------GCGGGG-GGSS--
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECcccccchH-------hHHHHH-hCCC--
Confidence 456666778899999999999988776666666777777888 455689999976521 223333 3333
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+++++||+++ .++.++++++.+.+|
T Consensus 136 --~~~~~~Sa~~~----------~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 136 --GDPIPTSSEHA----------RGLEELLEAIWERLP 161 (161)
T ss_dssp --CSCEECBTTTT----------BSHHHHHHHHHHHCC
T ss_pred --CCeEEEecccC----------CChHHHHHHHHHhCc
Confidence 37999999997 589999999988764
No 38
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.83 E-value=1.1e-19 Score=168.73 Aligned_cols=157 Identities=19% Similarity=0.165 Sum_probs=111.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh---
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD--- 87 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~--- 87 (396)
...+|+++|++|+|||||+++|++........ ..+.|.+.....+..++..+.||||||+.+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~---------------~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP---------------RPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS---------------SSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecC---------------CCCceeEEEEEEEEeCCcEEEEecCccccchhh
Confidence 35689999999999999999999653221100 112332222223445678899999999766
Q ss_pred -----hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 88 -----YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 88 -----~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
|......++..+|++++|+|++++....+...+..+... ++|.+ +++||+|+.+.... +...+..+
T Consensus 71 ~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~i-lV~NK~Dl~~~~~~---~~~~~~~~--- 143 (301)
T 1wf3_A 71 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPIL-LVGNKLDAAKYPEE---AMKAYHEL--- 143 (301)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEE-EEEECGGGCSSHHH---HHHHHHHT---
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEE-EEEECcccCCchHH---HHHHHHHh---
Confidence 566777788899999999999988777776666677766 78854 56899999865331 11122222
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+ ..+++++||++| .++.+|++.+...++
T Consensus 144 ~~----~~~~~~iSA~~g----------~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 144 LP----EAEPRMLSALDE----------RQVAELKADLLALMP 172 (301)
T ss_dssp ST----TSEEEECCTTCH----------HHHHHHHHHHHTTCC
T ss_pred cC----cCcEEEEeCCCC----------CCHHHHHHHHHHhcc
Confidence 22 257999999997 589999999988765
No 39
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.83 E-value=5.8e-20 Score=157.52 Aligned_cols=163 Identities=14% Similarity=0.199 Sum_probs=110.0
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
....++|+++|+.++|||||+++|++...... .+...|.+.......+......+.||||||+++|
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 74 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEF--------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTT--------------SCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCc--------------CCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh
Confidence 45679999999999999999999986421110 0011133333333333333457899999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
...+...+..+|++++|+|+++... ....+++..+... ++| +++++||+|+.+..+. ...++..+++..+
T Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 148 (181)
T 2efe_B 75 HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDLLDARKV---TAEDAQTYAQENG-- 148 (181)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCS---CHHHHHHHHHHTT--
T ss_pred hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccccC---CHHHHHHHHHHcC--
Confidence 8888888899999999999987332 3334444444443 555 5567899999754211 1123445555443
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
++++++||+++ .++.+++++|.+.++.
T Consensus 149 ---~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 149 ---LFFMETSAKTA----------TNVKEIFYEIARRLPR 175 (181)
T ss_dssp ---CEEEECCSSSC----------TTHHHHHHHHHHTCC-
T ss_pred ---CEEEEEECCCC----------CCHHHHHHHHHHHHHh
Confidence 57999999997 6899999999887754
No 40
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.82 E-value=4.1e-19 Score=154.24 Aligned_cols=162 Identities=15% Similarity=0.152 Sum_probs=109.3
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC----
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG---- 84 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG---- 84 (396)
....++|+++|+.|+|||||+++|++..... ......|.|.......+ +..+.+|||||
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~ 82 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLA--------------RTSSKPGKTQTLNFYII---NDELHFVDVPGYGFA 82 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEEEE---TTTEEEEECCCBCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCcc--------------ccCCCCCceeeEEEEEE---CCcEEEEECCCCCcc
Confidence 3467999999999999999999998642100 00111233433333222 23699999999
Q ss_pred ------hhhhHHHHHhhhhcC---CEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHH
Q psy15217 85 ------HADYIKNMITGAAQM---DGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIR 155 (396)
Q Consensus 85 ------~~~~~~~~~~~~~~~---d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~ 155 (396)
++.|...+...+..+ |++++|+|++++...+..+.+..+...++| +++++||+|+.+..+.. ....++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~-~~~~~~~ 160 (195)
T 1svi_A 83 KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP-VIVIATKADKIPKGKWD-KHAKVVR 160 (195)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGHH-HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCChHHHH-HHHHHHH
Confidence 777766665555555 999999999988777777666777777888 45568999998764322 2223444
Q ss_pred HHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 156 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+.+... ...+++++||+++ .++.++++++.+.++
T Consensus 161 ~~~~~~----~~~~~~~~Sa~~~----------~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 161 QTLNID----PEDELILFSSETK----------KGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHHTCC----TTSEEEECCTTTC----------TTHHHHHHHHHHHHT
T ss_pred HHHccc----CCCceEEEEccCC----------CCHHHHHHHHHHHhc
Confidence 433321 2478999999997 589999999887553
No 41
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.82 E-value=7.6e-20 Score=156.28 Aligned_cols=168 Identities=18% Similarity=0.168 Sum_probs=107.9
Q ss_pred CCcccccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEE
Q psy15217 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYA 78 (396)
Q Consensus 1 ~~~~~~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~ 78 (396)
|...++..+.+.++|+++|+.|+|||||+++|++..... +....++.+.....+..++ ..+.
T Consensus 3 m~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (179)
T 2y8e_A 3 MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDN----------------TYQATIGIDFLSKTMYLEDRTVRLQ 66 (179)
T ss_dssp ---------CEEEEEEEEESTTSSHHHHHHHHHHSCCCS----------------SCCCCCSEEEEEEEEEETTEEEEEE
T ss_pred cccccccCCCcceEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCceeeEEEEEEEEECCeEEEEE
Confidence 455566566677999999999999999999998542110 1122344444444444444 4788
Q ss_pred EEecCChhhhHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHH
Q psy15217 79 HVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEI 154 (396)
Q Consensus 79 iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~ 154 (396)
+|||||+++|...+...+..+|++++|+|+++.. ......++..+.. .++| +++++||+|+.+..+.. ..+.
T Consensus 67 ~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~ 142 (179)
T 2y8e_A 67 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVS---TEEG 142 (179)
T ss_dssp EEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGGGGCCSC---HHHH
T ss_pred EEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccCcCC---HHHH
Confidence 9999999999888888888999999999998732 1222333333332 3566 55678999987542110 1123
Q ss_pred HHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 155 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
..+.+..+ ++++++||+++ .++.+++++|.+.++
T Consensus 143 ~~~~~~~~-----~~~~~~Sa~~~----------~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 143 ERKAKELN-----VMFIETSAKAG----------YNVKQLFRRVAAALP 176 (179)
T ss_dssp HHHHHHHT-----CEEEEEBTTTT----------BSHHHHHHHHHHTCC
T ss_pred HHHHHHcC-----CeEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 33344333 58999999997 589999999988664
No 42
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.82 E-value=5.6e-19 Score=153.13 Aligned_cols=160 Identities=20% Similarity=0.222 Sum_probs=112.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC-----
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG----- 84 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG----- 84 (396)
...++|+++|+.|+|||||+++|++....... ...|.|....... .+..+.+|||||
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---------------~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~ 82 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS---------------KTPGKTRSINFYL---VNSKYYFVDLPGYGYAK 82 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC---------------SSCCCCCCEEEEE---ETTTEEEEECCCBSSSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccccc---------------CCCCCccCeEEEE---ECCcEEEEECCCCcccc
Confidence 45689999999999999999999865311100 0113333332221 234688999999
Q ss_pred -----hhhhHHHHHhh---hhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHH
Q psy15217 85 -----HADYIKNMITG---AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRE 156 (396)
Q Consensus 85 -----~~~~~~~~~~~---~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~ 156 (396)
++.|...+... ...+|++++|+|+..+......+.+..+...++|. ++++||+|+.+.++. +...+++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl~~~~~~-~~~~~~~~~ 160 (195)
T 3pqc_A 83 VSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPF-TIVLTKMDKVKMSER-AKKLEEHRK 160 (195)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEECGGGSCGGGH-HHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCE-EEEEEChhcCChHHH-HHHHHHHHH
Confidence 55565544444 44559999999999887777777777888889995 456899999876433 333345666
Q ss_pred HHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 157 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
++...+ ..+++++||+++ .++.++++++.+.++
T Consensus 161 ~~~~~~----~~~~~~~Sa~~~----------~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 161 VFSKYG----EYTIIPTSSVTG----------EGISELLDLISTLLK 193 (195)
T ss_dssp HHHSSC----CSCEEECCTTTC----------TTHHHHHHHHHHHHC
T ss_pred HHhhcC----CCceEEEecCCC----------CCHHHHHHHHHHHhh
Confidence 666544 368999999997 689999999987654
No 43
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.82 E-value=3.5e-20 Score=161.09 Aligned_cols=174 Identities=20% Similarity=0.221 Sum_probs=112.6
Q ss_pred CCcccccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeee-----EEeeCCe
Q psy15217 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHI-----EYETKAR 75 (396)
Q Consensus 1 ~~~~~~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~-----~~~~~~~ 75 (396)
|+...+...+..++|+++|+.|+|||||++.|.+.......+.... .......|+...+. .++....
T Consensus 3 m~~~~~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~~ 74 (198)
T 3t1o_A 3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVS--------LATEDERTLFFDFLPLDIGEVKGFKT 74 (198)
T ss_dssp -CEEETTTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEE--------EECSSCEEEEEEECCSSCCCSSSCEE
T ss_pred ccccchhccccccEEEEECCCCCCHHHHHHHHHhhccccccccccc--------cccccccceeeeecccccccccCCce
Confidence 3333444556789999999999999999977765432221110000 00011223332222 1222345
Q ss_pred eEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHH---------cCCCeEEEEEeccCCCCHHHH
Q psy15217 76 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ---------VGVPYIVVFLNKADMVDDEEL 146 (396)
Q Consensus 76 ~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~---------~~ip~iIvviNK~D~~~~~~~ 146 (396)
.+.+|||||+++|...+...+..+|++++|+|++++...+..+.+..+.. .++| ++++.||+|+.+..
T Consensus 75 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~-- 151 (198)
T 3t1o_A 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDLPDAL-- 151 (198)
T ss_dssp EEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTSTTCC--
T ss_pred EEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhccccc--
Confidence 68899999999999999999999999999999996544444444433322 3677 55568999997641
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 147 LELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 147 ~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
..+++.++++..++ .+++++||+++ .++.+++++|.+.+
T Consensus 152 ---~~~~~~~~~~~~~~----~~~~~~Sa~~~----------~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 152 ---PVEMVRAVVDPEGK----FPVLEAVATEG----------KGVFETLKEVSRLV 190 (198)
T ss_dssp ---CHHHHHHHHCTTCC----SCEEECBGGGT----------BTHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHhcCC----ceEEEEecCCC----------cCHHHHHHHHHHHH
Confidence 11245566665543 38999999997 58999999887644
No 44
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.81 E-value=2.6e-19 Score=154.84 Aligned_cols=162 Identities=17% Similarity=0.114 Sum_probs=109.9
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
..++.++|+++|+.|+|||||+++|++..... ....|+......++.....+.||||||+++
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNE------------------DMIPTVGFNMRKITKGNVTIKLWDIGGQPR 79 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC------------------SCCCCCSEEEEEEEETTEEEEEEEECCSHH
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCC------------------ccCCCCceeEEEEEeCCEEEEEEECCCCHh
Confidence 34567999999999999999999998642110 001222223334566788899999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
|...+...+..+|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+.... +. +.+.+....
T Consensus 80 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~~----~~~~~~~~~ 153 (188)
T 1zd9_A 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPGALDE-KE----LIEKMNLSA 153 (188)
T ss_dssp HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCCCH-HH----HHHHTTGGG
T ss_pred HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCccCCCH-HH----HHHHhChhh
Confidence 9988888889999999999998732 2333334433332 4677 5557899999764111 11 222222111
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
......+++++||+++ .++.+++++|.+.+.
T Consensus 154 ~~~~~~~~~~~SA~~g----------~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 154 IQDREICCYSISCKEK----------DNIDITLQWLIQHSK 184 (188)
T ss_dssp CCSSCEEEEECCTTTC----------TTHHHHHHHHHHTCC
T ss_pred hccCCeeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 2223568999999997 589999999988664
No 45
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.2e-19 Score=157.57 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=112.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
++.++|+++|+.|+|||||+++|++..... ......|.+.......+......+.||||||+++|.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 86 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDH--------------NISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH 86 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCT--------------TCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCC--------------CcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH
Confidence 457999999999999999999998642110 000112444444444454456688999999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
..+...+..+|++++|+|+++... .....++..+... ++| +++++||+|+.+..+. ..+++.++++..+
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~v---~~~~~~~~~~~~~--- 159 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV-MAIAGNKCDLSDIREV---PLKDAKEYAESIG--- 159 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHTTT---
T ss_pred hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcC---
Confidence 888888899999999999987432 2233344444443 566 5567899999753111 1123455555443
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
.+++++||+++ .++.+++++|.+.++.
T Consensus 160 --~~~~~~Sa~~~----------~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 160 --AIVVETSAKNA----------INIEELFQGISRQIPP 186 (192)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHTCC-
T ss_pred --CEEEEEeCCCC----------cCHHHHHHHHHHHHHh
Confidence 58999999997 6899999999887653
No 46
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.81 E-value=2.6e-19 Score=176.19 Aligned_cols=162 Identities=22% Similarity=0.277 Sum_probs=118.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC-----
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG----- 84 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG----- 84 (396)
...++|+++|++++|||||+++|++..... .+...|+|.+.....++.++..+.||||||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~---------------~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~ 257 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI---------------VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKG 257 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE---------------ECC------CTTSEEEEETTEEEEETTGGGTTTBT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccc---------------cCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCc
Confidence 457899999999999999999998542111 111236777766667778888999999999
Q ss_pred -----hhhhHHHH-HhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH-HHHHHHHHHHHHHH
Q psy15217 85 -----HADYIKNM-ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIREL 157 (396)
Q Consensus 85 -----~~~~~~~~-~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~-~~~~~~i~~~~~~~ 157 (396)
+++|.... ..++..+|++++|+|++++...|+.+++..+...++| +++|+||+|+.+. +...+...+.+++.
T Consensus 258 ~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 258 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDH 336 (456)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCSSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEEChhcCCCchHHHHHHHHHHHHh
Confidence 67776553 4577899999999999999999999999999999988 5556899999864 22334445556666
Q ss_pred HhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 158 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 158 l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
+...+. .|++++||++|. ++.+|++++.+.
T Consensus 337 ~~~~~~----~~~~~~SA~~g~----------gv~~l~~~i~~~ 366 (456)
T 4dcu_A 337 FQFLDY----APILFMSALTKK----------RIHTLMPAIIKA 366 (456)
T ss_dssp CGGGTT----SCEEECCTTTCT----------TGGGHHHHHHHH
T ss_pred cccCCC----CCEEEEcCCCCc----------CHHHHHHHHHHH
Confidence 555443 789999999984 566666655443
No 47
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.81 E-value=1.3e-19 Score=153.45 Aligned_cols=161 Identities=16% Similarity=0.192 Sum_probs=108.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
.+.++|+++|+.++|||||+++|++...... .+...|.+.......+......+.+|||||+++|.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 69 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEF--------------QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 69 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTT--------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh
Confidence 3579999999999999999999986421110 01112333333333343345678999999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
..+...+..+|++++|+|+++... ....+++..+... ++| ++++.||+|+.+.... ...+...+.+..+
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 142 (170)
T 1r2q_A 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV-IALSGNKADLANKRAV---DFQEAQSYADDNS--- 142 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHHTT---
T ss_pred hhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCcccccc---CHHHHHHHHHHcC---
Confidence 888888899999999999987321 2233334444433 455 5556799998653111 0113344444433
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+++++||++| .++.+++++|.+.++
T Consensus 143 --~~~~~~Sa~~g----------~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 143 --LLFMETSAKTS----------MNVNEIFMAIAKKLP 168 (170)
T ss_dssp --CEEEECCTTTC----------TTHHHHHHHHHHTSC
T ss_pred --CeEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 58999999997 689999999988664
No 48
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=7.8e-20 Score=154.74 Aligned_cols=163 Identities=14% Similarity=0.153 Sum_probs=105.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
+.++|+++|+.|+|||||+++|++...... .....|.+.......+......+.+|||||+++|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 67 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAEN--------------KEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS 67 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT--------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh
Confidence 468999999999999999999986421110 000113333333333333345788999999999988
Q ss_pred HHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+.....+....+...+.+..+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~---- 142 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKIDXLQEGGERKVAREEGEKLAEEKG---- 142 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT----
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCccccccccCCCHHHHHHHHHHcC----
Confidence 88888899999999999987322 222233333332 2566 55678999986531000001112334444443
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+++++||+++ .++.++++++.+.++
T Consensus 143 -~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 143 -LLFFETSAKTG----------ENVNDVFLGIGEKIP 168 (170)
T ss_dssp -CEEEECCTTTC----------TTHHHHHHHHHTTSC
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 57999999997 689999999987654
No 49
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.81 E-value=2.1e-19 Score=153.61 Aligned_cols=162 Identities=14% Similarity=0.073 Sum_probs=109.0
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC---eeEEEEecCCh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA---RHYAHVDCPGH 85 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~---~~~~iiDtpG~ 85 (396)
.++.++|+++|+.++|||||+++|++.... .+....++.+.....+..++ ..+.+|||||+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 66 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFG----------------KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTT----------------HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCC----------------CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC
Confidence 346799999999999999999999864211 11112222222223334433 67899999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH-----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~-----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~ 159 (396)
++|...+...+..+|++++|+|+++... .....++..+.. .+.|.+++++||+|+.+..... .++...+.+
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~---~~~~~~~~~ 143 (178)
T 2hxs_A 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK---PEKHLRFCQ 143 (178)
T ss_dssp CTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC---HHHHHHHHH
T ss_pred ccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC---HHHHHHHHH
Confidence 9998888888899999999999987321 222233333333 2677667778999996531110 113344444
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
..+ ++++++||+++ .++.+++++|.+.+..
T Consensus 144 ~~~-----~~~~~~Sa~~~----------~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 144 ENG-----FSSHFVSAKTG----------DSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHT-----CEEEEECTTTC----------TTHHHHHHHHHHHHTT
T ss_pred HcC-----CcEEEEeCCCC----------CCHHHHHHHHHHHHHh
Confidence 443 57999999997 6899999999886653
No 50
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.80 E-value=8.5e-19 Score=149.62 Aligned_cols=160 Identities=16% Similarity=0.094 Sum_probs=106.4
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCCh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGH 85 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~ 85 (396)
+..+.++|+++|+.|+|||||+++|++.... .+....++.+.....+..++ ..+.+|||||+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFD----------------TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCC----------------C----CCSEEEEEEEEEETTEEEEEEEEECCCC
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCc
Confidence 3456799999999999999999999864211 11122333344334444444 47889999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCCh-hHHHHHHHHHH-------cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPMP-QTREHILLARQ-------VGVPYIVVFLNKADMVDDEELLELVEIEIREL 157 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~~-qt~e~l~~~~~-------~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~ 157 (396)
++|...+...+..+|++++|+|+++...- .....+..+.. .++| +++++||+|+.+.+... +++..+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~----~~~~~~ 141 (177)
T 1wms_A 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDISERQVST----EEAQAW 141 (177)
T ss_dssp GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCSSCSSCH----HHHHHH
T ss_pred hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCcccccccCH----HHHHHH
Confidence 99999998889999999999999873221 11222222221 4667 55568999997432111 123344
Q ss_pred HhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 158 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 158 l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++... ..+++++||+++ .++.++++++.+.+
T Consensus 142 ~~~~~----~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 142 CRDNG----DYPYFETSAKDA----------TNVAAAFEEAVRRV 172 (177)
T ss_dssp HHHTT----CCCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHhcC----CceEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 44222 368999999997 68999999987754
No 51
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=3.5e-19 Score=153.84 Aligned_cols=162 Identities=17% Similarity=0.125 Sum_probs=106.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
++.++|+++|+.|+|||||+++|++..... + ..|+......+..++..+.+|||||+++|.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------~------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 74 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH-------T------------SPTIGSNVEEIVINNTRFLMWDIGGQESLR 74 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEE-------E------------ECCSCSSCEEEEETTEEEEEEECCC----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-------C------------cCCCccceEEEEECCEEEEEEECCCCHhHH
Confidence 567999999999999999999998542110 0 011112223444567889999999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
..+...+..+|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+... .+ ++.+.+....+.
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~ 148 (187)
T 1zj6_A 75 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMT-VA----EISQFLKLTSIK 148 (187)
T ss_dssp GGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHHTGGGCC
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCCCC-HH----HHHHHhChhhhc
Confidence 88778888999999999998853 3334444444433 3666 566789999976311 11 222333221122
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCCC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN 206 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~~ 206 (396)
...++++++||+++ .++++++++|.+.++.+.
T Consensus 149 ~~~~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 149 DHQWHIQACCALTG----------EGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp SSCEEEEECBTTTT----------BTHHHHHHHHHHHHCC--
T ss_pred CCCcEEEEccCCCC----------cCHHHHHHHHHHHHHHHh
Confidence 23468999999997 689999999988776543
No 52
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.80 E-value=4.9e-19 Score=154.18 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=108.9
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
...+..+|+++|+.++|||||+++|++...... ....|+......++.....+.||||||+++
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK-----------------HITATVGYNVETFEKGRVAFTVFDMGGAKK 75 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC---------------------CCCCCSSEEEEEEEETTEEEEEEEECCSGG
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc-----------------ccccccceeEEEEEeCCEEEEEEECCCCHh
Confidence 445788999999999999999999975422110 001122233334566788999999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHc-----------CCCeEEEEEeccCCCCHHHHHHHHHHHH-
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQV-----------GVPYIVVFLNKADMVDDEELLELVEIEI- 154 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~-----------~ip~iIvviNK~D~~~~~~~~~~i~~~~- 154 (396)
|...+...+..+|++|+|+|+++.. +....+.+..+... ++| +++|+||+|+.+... .+.+...+
T Consensus 76 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~~~~~~~~ 153 (199)
T 4bas_A 76 FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFANKMDAAGAKT-AAELVEILD 153 (199)
T ss_dssp GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEEECTTSTTCCC-HHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC-EEEEEECcCCCCCCC-HHHHHHHhc
Confidence 9988888899999999999999853 23344444444333 777 555689999986521 11122122
Q ss_pred -HHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 155 -RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 155 -~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
..+.+. ..++++++||+++ .++.+++++|.+.+.
T Consensus 154 ~~~~~~~-----~~~~~~~~Sa~~g----------~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 154 LTTLMGD-----HPFVIFASNGLKG----------TGVHEGFSWLQETAS 188 (199)
T ss_dssp HHHHHTT-----SCEEEEECBTTTT----------BTHHHHHHHHHHHHH
T ss_pred chhhccC-----CeeEEEEeeCCCc----------cCHHHHHHHHHHHHH
Confidence 111122 2468999999997 589999999877654
No 53
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.80 E-value=3.1e-19 Score=151.40 Aligned_cols=159 Identities=17% Similarity=0.091 Sum_probs=107.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
++.++|+++|+.|+|||||+++|++..... ...|+......+..+...+.+|||||+++|.
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 65 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-------------------TIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 65 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-------------------CCCCSSEEEEEEEETTEEEEEEEECCCGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-------------------cCCcCccceEEEEECCEEEEEEECCCChhhh
Confidence 457999999999999999999997642110 0112222233455567889999999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
..+...+..+|++++|+|+++.. .....+.+..... .++| +++++||+|+.+.... +.+ ...+......
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~~~----~~~~~~~~~~ 139 (171)
T 1upt_A 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDMEQAMTS-SEM----ANSLGLPALK 139 (171)
T ss_dssp GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-HHH----HHHHTGGGCT
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCCCCH-HHH----HHHhCchhcc
Confidence 88888889999999999998753 2333333333332 3666 5667899999864211 112 2222111122
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
...++++++||+++ .++.++++++.+.++
T Consensus 140 ~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 140 DRKWQIFKTSATKG----------TGLDEAMEWLVETLK 168 (171)
T ss_dssp TSCEEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred CCceEEEECcCCCC----------cCHHHHHHHHHHHHh
Confidence 23468999999997 589999999887653
No 54
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.80 E-value=3.9e-19 Score=154.40 Aligned_cols=158 Identities=17% Similarity=0.146 Sum_probs=108.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~ 87 (396)
...++|+++|+.++|||||+++|++.... .+...+.+.+.....+..++ ..+.||||||+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 77 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYT----------------ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC----------------SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCC----------------CCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 45789999999999999999999863211 11122445555545555555 5688999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
|...+...+..+|++++|+|+++... .....++..+... ++| +++++||+|+.+...... .+...+.+.++
T Consensus 78 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~- 152 (196)
T 3tkl_A 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVDY---TTAKEFADSLG- 152 (196)
T ss_dssp GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSCH---HHHHHHHHHTT-
T ss_pred hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccCH---HHHHHHHHHcC-
Confidence 98888888999999999999987321 2223333334333 566 555689999976421111 12344445444
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .++.+++++|.+.+
T Consensus 153 ----~~~~~~Sa~~g----------~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 153 ----IPFLETSAKNA----------TNVEQSFMTMAAEI 177 (196)
T ss_dssp ----CCEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred ----CcEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999997 58999888887654
No 55
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=4.4e-19 Score=151.82 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=101.5
Q ss_pred cCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCC
Q psy15217 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPG 84 (396)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG 84 (396)
+..++.++|+++|+.++|||||+++|++..... .+...+++.+.....+..++ ..+.+|||||
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G 69 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLA---------------GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCC---------------CCCCCCCSCEEEEEEEEETTEEEEEEEEECCC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCC---------------CCcCCceeeEEEEEEEEECCEEEEEEEEeCCC
Confidence 344668999999999999999999998642110 00111233333333334444 4788999999
Q ss_pred hhhhHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 85 HADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 85 ~~~~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
+++|...+...+..+|++++|+|+++... ....+++..+.. .++| +++++||+|+.+..... ..+...+.+.
T Consensus 70 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~ 145 (180)
T 2g6b_A 70 QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAHERVVK---REDGEKLAKE 145 (180)
T ss_dssp C--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECCSTTSCCCSC---HHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccCcccccC---HHHHHHHHHH
Confidence 99999888888999999999999987322 122333333333 3566 55678999997632110 1123344444
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+ ++++++||+++ .++.++++++.+.+.
T Consensus 146 ~~-----~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 146 YG-----LPFMETSAKTG----------LNVDLAFTAIAKELK 173 (180)
T ss_dssp HT-----CCEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred cC-----CeEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 43 47999999997 589999999877653
No 56
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.80 E-value=5.3e-19 Score=152.05 Aligned_cols=165 Identities=17% Similarity=0.117 Sum_probs=106.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
..++|+++|+.|+|||||+++|++......... ..+... .....+......+.+|||||+++|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~--------------t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~ 68 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP--------------TVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDR 68 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCC--------------CSCCEE-EEEEEETTEEEEEEEECCCCSGGGTT
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCC--------------ccccee-EEEEEECCEEEEEEEEECCCCHhHHH
Confidence 478999999999999999999986421100000 001111 11112222234567999999999988
Q ss_pred HHHhhhhcCCEEEEEEecCCCCChhH-H-HHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHH---------HHHHHHH
Q psy15217 91 NMITGAAQMDGAILVCSAADGPMPQT-R-EHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EIEIREL 157 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~~qt-~-e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i---------~~~~~~~ 157 (396)
.+...+..+|++++|+|+++...-+. . .++..+... ++| +++++||+|+.+.....+.+ ..+...+
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 147 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEcccccccchhhhhhcccccccCCHHHHHHH
Confidence 77788889999999999987322222 2 233344443 778 55568999997643222221 1133445
Q ss_pred HhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 158 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 158 l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
.+..+. .+++++||++| .++.++++++.+.+..+
T Consensus 148 ~~~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 148 AKEIGA----VKYLECSALTQ----------RGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp HHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHHHSCC
T ss_pred HHhcCC----cEEEEecCCCc----------cCHHHHHHHHHHHHhcc
Confidence 555443 48999999997 58999999998876544
No 57
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.80 E-value=4.4e-19 Score=150.16 Aligned_cols=161 Identities=17% Similarity=0.204 Sum_probs=109.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
.+.++|+++|+.|+|||||+++|++..... ......|.+.......+......+.+|||||+++|.
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 69 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDP--------------NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR 69 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCT--------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh
Confidence 357999999999999999999998642110 001112444444444444444678999999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
..+...+..+|++++|+|+++... .....++..+... ++| ++++.||+|+.+..+.. .++...+.+..+
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~--- 142 (170)
T 1z0j_A 70 ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVREVM---ERDAKDYADSIH--- 142 (170)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGCCSC---HHHHHHHHHHTT---
T ss_pred cccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECCccccccccC---HHHHHHHHHHcC---
Confidence 888888899999999999987432 2223344444443 344 55667999997642211 113344444443
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+++++||+++ .++.++++++.+.++
T Consensus 143 --~~~~~~Sa~~~----------~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 143 --AIFVETSAKNA----------ININELFIEISRRIP 168 (170)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHHCC
T ss_pred --CEEEEEeCCCC----------cCHHHHHHHHHHHHh
Confidence 57999999997 589999999988664
No 58
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.80 E-value=1.1e-18 Score=146.95 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=104.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 92 (396)
++|+++|+.|+|||||+++|++..... . ..|+......++..+..+.+|||||+++|...+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~------------~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 61 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT------------T-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC------------C-------CCCSSCCEEEEECSSCEEEEEECCCCGGGHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc------------c-------cCcCceeEEEEEECCEEEEEEEcCCChhhHHHH
Confidence 589999999999999999998642110 0 112222233455567889999999999999888
Q ss_pred HhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15217 93 ITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (396)
Q Consensus 93 ~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 167 (396)
...+..+|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+... .+. +...+.........
T Consensus 62 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~~----~~~~~~~~~~~~~~ 135 (164)
T 1r8s_A 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAMN-AAE----ITDKLGLHSLRHRN 135 (164)
T ss_dssp HHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HHH----HHHHTTGGGCSSCC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCCCC-HHH----HHHHhCcccccCcc
Confidence 88899999999999998742 2223333333322 2566 556789999976421 111 22222111122234
Q ss_pred CeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 168 ~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+++++||+++ .++.++++++.+.+.
T Consensus 136 ~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 136 WYIQATCATSG----------DGLYEGLDWLSNQLR 161 (164)
T ss_dssp EEEEECBTTTT----------BTHHHHHHHHHHHC-
T ss_pred EEEEEcccCCC----------cCHHHHHHHHHHHHh
Confidence 68999999997 589999999987664
No 59
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.80 E-value=8.6e-19 Score=153.40 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=106.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~ 87 (396)
...++|+++|+.++|||||+++|++.... .+....++.+.....+..++ ..+.||||||+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFS----------------ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC--------------------------CEEEEEEEETTEEEEEEEECCTTCGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCC----------------CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 45789999999999999999999864211 11111222223333444444 5788999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
|...+...+..+|++++|+|+++.. +....+++..+.. .++| +++++||+|+.+.... ..+++.++++..++
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v---~~~~~~~~~~~~~~ 166 (201)
T 2hup_A 91 FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV-QLLIGNKSDLSELREV---SLAEAQSLAEHYDI 166 (201)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS---CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCcccccccc---CHHHHHHHHHHcCC
Confidence 9998888999999999999998632 1222333434433 3466 5557899999753111 01234455555543
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+++++||+++ .++.+++++|.+.+.
T Consensus 167 ----~~~~~~SA~~g----------~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 167 ----LCAIETSAKDS----------SNVEEAFLRVATELI 192 (201)
T ss_dssp ----SEEEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 38999999997 589999999877653
No 60
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.79 E-value=6e-19 Score=153.16 Aligned_cols=161 Identities=16% Similarity=0.109 Sum_probs=106.8
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCCh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGH 85 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~ 85 (396)
.....++|+++|+.|+|||||+++|++.... .+....++.+.....+..++ ..+.+|||||+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFC----------------EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCC----------------cCCCCccceeEEEEEEEECCeEEEEEEEeCCCc
Confidence 3345789999999999999999999753211 11122333344334444444 46889999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCCh-hHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPMP-QTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
++|...+...+..+|++++|+|+++...- ....++..+... ++| +++++||+|+.+..+. ..++...+.+.+
T Consensus 86 ~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~~~~~v---~~~~~~~~~~~~ 161 (192)
T 2il1_A 86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREI---TRQQGEKFAQQI 161 (192)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc---CHHHHHHHHHhc
Confidence 99999999999999999999999873321 222333344433 566 5567899998653211 011334444443
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
. ..+++++||+++ .++.+++++|.+.+
T Consensus 162 ~----~~~~~~~SA~~g----------~gi~~l~~~l~~~i 188 (192)
T 2il1_A 162 T----GMRFCEASAKDN----------FNVDEIFLKLVDDI 188 (192)
T ss_dssp T----TCEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred C----CCeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 2 368999999997 58999999887643
No 61
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=6.1e-19 Score=154.45 Aligned_cols=160 Identities=17% Similarity=0.115 Sum_probs=107.3
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCCh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGH 85 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~ 85 (396)
.....++|+++|+.|+|||||+++|++..... +....++.+.....+..++ ..+.||||||+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPP----------------GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCT----------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCC----------------CCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 34557999999999999999999998642111 1112333444434444444 46889999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
++|...+...+..+|++++|+|+++... ....+.+..+... ++| +++++||+|+.+..+.. ..+...+.+..
T Consensus 86 ~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~ 161 (201)
T 2ew1_A 86 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKIDLAERREVS---QQRAEEFSEAQ 161 (201)
T ss_dssp GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCSSC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccC---HHHHHHHHHHc
Confidence 9999999999999999999999987321 1123333333332 455 55678999997531110 11233344433
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+ ++++++||++| .++.++++++.+.+
T Consensus 162 ~-----~~~~~~Sa~~g----------~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 162 D-----MYYLETSAKES----------DNVEKLFLDLACRL 187 (201)
T ss_dssp T-----CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred C-----CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 3 57999999997 58999999887654
No 62
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.79 E-value=5.7e-19 Score=150.77 Aligned_cols=161 Identities=16% Similarity=0.134 Sum_probs=107.8
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
....++|+++|+.++|||||+++|++...... .....+.+.......+......+.+|||||+++|
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 77 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD--------------CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 77 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSS--------------CTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceEEEEEEEEECCeEEEEEEEECCCChHh
Confidence 34579999999999999999999986431100 0011233333333333333457889999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
...+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+.... ..+++.++++..+
T Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 151 (179)
T 1z0f_A 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDV---TYEEAKQFAEENG-- 151 (179)
T ss_dssp CHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT--
T ss_pred hhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcC--
Confidence 9988889999999999999987422 112223333333 3566 5567899999653111 1123445555544
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .++.++++++.+.+
T Consensus 152 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 152 ---LLFLEASAKTG----------ENVEDAFLEAAKKI 176 (179)
T ss_dssp ---CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 58999999997 58999999987654
No 63
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.79 E-value=7.6e-19 Score=154.09 Aligned_cols=161 Identities=15% Similarity=0.086 Sum_probs=106.4
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHA 86 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~ 86 (396)
..+.++|+++|+.|+|||||+++|+...... . ....+.+.....+..++ ..+.||||||++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~------------~-----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPG------------E-----YIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 89 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC------------------CCCCSEEEEEEEEECC-CEEEEEEEEECCSG
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCC------------C-----cCCeecceeEEEEEECCEEEEEEEEECCCch
Confidence 4567999999999999999999998542110 0 01222222222333343 345699999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCCChhHH--HHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHH---------HHH
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EIE 153 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i---------~~~ 153 (396)
+|...+...+..+|++++|+|+++...-+.. ..+..+... ++| +++++||+|+.+.....+.. ..+
T Consensus 90 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 168 (204)
T 4gzl_A 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 168 (204)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred hhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhccchhhhhhhhccccccccHHH
Confidence 9988888888999999999999873322221 233344444 778 55568999997653322221 123
Q ss_pred HHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 154 IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 154 ~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
...+.+..+. .+++++||++| .|+.++++++.+.
T Consensus 169 ~~~~~~~~~~----~~~~~~SA~~g----------~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 169 GLAMAKEIGA----VKYLECSALTQ----------RGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHT
T ss_pred HHHHHHhcCC----cEEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 4455565554 57999999997 6899999998764
No 64
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.79 E-value=5.4e-19 Score=152.38 Aligned_cols=159 Identities=19% Similarity=0.151 Sum_probs=107.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
++.++|+++|+.|+|||||+++|++..... ...|+......+..++..+.+|||||+++|.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 76 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDT-------------------ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 76 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSS-------------------CCCCSSEEEEEEEETTEEEEEEEECCSHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCc-------------------ccccCccceEEEEECCEEEEEEECCCCHhHH
Confidence 568999999999999999999998642000 0112222233444567889999999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
..+...+..+|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+... .+ ++.+.+......
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 150 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLPGALS-CN----AIQEALELDSIR 150 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHTTGGGCC
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCCCC-HH----HHHHHhChhhcc
Confidence 88888889999999999998743 2333334433332 3566 566789999976421 11 222222211122
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
....+++++||+++ .+++++++++.+.++
T Consensus 151 ~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 151 SHHWRIQGCSAVTG----------EDLLPGIDWLLDDIS 179 (186)
T ss_dssp SSCEEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred CCceEEEEeeCCCC----------CCHHHHHHHHHHHHH
Confidence 23568999999997 589999999887654
No 65
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.79 E-value=1e-18 Score=150.24 Aligned_cols=160 Identities=19% Similarity=0.152 Sum_probs=107.0
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
++..++|+++|+.|+|||||+++|++..... + ....|. ....+..++..+.+|||||+++|
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-------~--------~~t~g~----~~~~~~~~~~~l~i~Dt~G~~~~ 73 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDISH-------I--------TPTQGF----NIKSVQSQGFKLNVWDIGGQRKI 73 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCEE-------E--------EEETTE----EEEEEEETTEEEEEEECSSCGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCCc-------c--------cCcCCe----EEEEEEECCEEEEEEECCCCHHH
Confidence 3567999999999999999999997531100 0 001122 12234456788999999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHH----HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~----~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
...+...+..+|++++|+|+++.. +....+++..+. ..++| ++++.||+|+.+... .+ ++.+.+.....
T Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~~~~~~~~~~~ 147 (181)
T 1fzq_A 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLLTAAP-AS----EIAEGLNLHTI 147 (181)
T ss_dssp HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTCCC-HH----HHHHHTTGGGC
T ss_pred HHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcccCCC-HH----HHHHHhCchhc
Confidence 998888899999999999998742 222333333322 13677 555789999976421 11 22222221112
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.....+++++||++| .|+.++++++.+.+.
T Consensus 148 ~~~~~~~~~~Sa~~g----------~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 148 RDRVWQIQSCSALTG----------EGVQDGMNWVCKNVN 177 (181)
T ss_dssp CSSCEEEEECCTTTC----------TTHHHHHHHHHHTC-
T ss_pred cCCceEEEEccCCCC----------CCHHHHHHHHHHHHH
Confidence 223568999999997 689999999988664
No 66
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.79 E-value=7.6e-19 Score=163.38 Aligned_cols=159 Identities=17% Similarity=0.160 Sum_probs=110.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChh-hhH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA-DYI 89 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~-~~~ 89 (396)
+..+|+++|++|+|||||+++|++........ ..+.|.+.....+..++..+.|+||||+. ++.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~---------------~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~ 71 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSR---------------KAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 71 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCC---------------CSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCC---------------CCCcceeeEEEEEEECCeeEEEEECcCCCccch
Confidence 34589999999999999999999753221110 01222222222345567889999999987 332
Q ss_pred H--------HHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCC-HHHHHHHHHHHHHHHHhh
Q psy15217 90 K--------NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD-DEELLELVEIEIRELLNK 160 (396)
Q Consensus 90 ~--------~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~-~~~~~~~i~~~~~~~l~~ 160 (396)
. ....++..+|++++|+|+.+ ...++...+..+...+.|.++ ++||+|+.. ... +...+..+.+.
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~il-vlNK~D~~~~~~~----~~~~l~~l~~~ 145 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVIL-AVNKVDNVQEKAD----LLPHLQFLASQ 145 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEE-EEESTTTCCCHHH----HHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEE-EEECcccCccHHH----HHHHHHHHHHh
Confidence 2 12345668899999999988 878888777777767889555 679999987 322 22234444444
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
+++ .+++++||+++ .++.+|++.+...+|.
T Consensus 146 ~~~----~~~i~iSA~~g----------~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 146 MNF----LDIVPISAETG----------LNVDTIAAIVRKHLPE 175 (301)
T ss_dssp SCC----SEEEECCTTTT----------TTHHHHHHHHHTTCCB
T ss_pred cCc----CceEEEECCCC----------CCHHHHHHHHHHhCCc
Confidence 444 47999999987 5899999999887763
No 67
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=154.72 Aligned_cols=161 Identities=17% Similarity=0.101 Sum_probs=106.8
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
....++|+++|+.|+|||||+++|++....... ....|.+.......+......+.||||||+++|
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS--------------RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY 87 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC--------------CCCSSEEEEEEEEEETTEEEEEEEEEESCCCTT
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--------------CCccceeEEEEEEEECCEEEEEEEEeCCCchhh
Confidence 345799999999999999999999864211100 001133333333333334567889999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
...+...+..+|++++|+|+++... .....++..+... ++| +++++||+|+.+.... ...+...+.+..+
T Consensus 88 ~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 161 (193)
T 2oil_A 88 RAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIV-VMLVGNKSDLSQAREV---PTEEARMFAENNG-- 161 (193)
T ss_dssp CTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHHTT--
T ss_pred hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECCCccccccc---CHHHHHHHHHHcC--
Confidence 8888888899999999999987322 2223334344332 556 5567899999753111 0113444444443
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .++.+++++|.+.+
T Consensus 162 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~i 186 (193)
T 2oil_A 162 ---LLFLETSALDS----------TNVELAFETVLKEI 186 (193)
T ss_dssp ---CEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999997 58999999887643
No 68
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.79 E-value=1.5e-18 Score=150.18 Aligned_cols=159 Identities=21% Similarity=0.155 Sum_probs=106.1
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEee-eeEEeeC-----------Cee
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA-HIEYETK-----------ARH 76 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~-----------~~~ 76 (396)
....++|+++|+.|+|||||+++|++..... +....+..+.. ...+... ...
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNS----------------KFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCC----------------SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCc----------------CcccccceeeeeEEEEEecCCcccccccCcEEE
Confidence 4557999999999999999999998642110 00111222222 2223222 357
Q ss_pred EEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHH
Q psy15217 77 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVE 151 (396)
Q Consensus 77 ~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~ 151 (396)
+.+|||||+++|...+...+..+|++++|+|+++... ....+++..+.. .++| +++++||+|+.+.... ..
T Consensus 72 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~ 147 (195)
T 3bc1_A 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQRAV---KE 147 (195)
T ss_dssp EEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGGGCCS---CH
T ss_pred EEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccc---CH
Confidence 8999999999999999999999999999999987322 122333333333 3677 5557899999753111 01
Q ss_pred HHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 152 IEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+++..+.+..+ ++++++||+++ .++.+++++|.+.+
T Consensus 148 ~~~~~~~~~~~-----~~~~~~Sa~~~----------~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 148 EEARELAEKYG-----IPYFETSAANG----------TNISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHHHHHHT-----CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-----CCEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 23344444444 47999999997 58999999887654
No 69
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.79 E-value=1.4e-18 Score=149.60 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=107.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~ 87 (396)
...++|+++|+.|+|||||+++|++..... +....++.+.....+..++ ..+.+|||||+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 71 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD----------------DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT----------------TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 457999999999999999999998642111 1112344444444444444 5788999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCCh-hHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~~-qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
|...+...+..+|++++|+|+++...- ....++..+.. .++| +++++||+|+.+..... ..+...+.+..+
T Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 146 (186)
T 2bme_A 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDLDADREVT---FLEASRFAQENE- 146 (186)
T ss_dssp GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccC---HHHHHHHHHHcC-
Confidence 999999999999999999999873221 11223322232 3566 55678999996431110 113344444443
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .++.++++++.+.+
T Consensus 147 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 147 ----LMFLETSALTG----------ENVEEAFVQCARKI 171 (186)
T ss_dssp ----CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ----CEEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 58999999997 58999998887654
No 70
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=156.01 Aligned_cols=165 Identities=16% Similarity=0.144 Sum_probs=103.5
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
.++.++|+++|+.++|||||+++|++..... ......|.+.......++.....+.||||||+++|
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 90 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE--------------NISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF 90 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEEEEEEETTEEEEEEEEECTTCTTC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCc--------------cCCCCccceeEEEEEEECCEEEEEEEEECCCCcch
Confidence 3567999999999999999999998642110 00011122222333333333456889999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHH---HHHHHHHHHHHHhhc
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEEL---LELVEIEIRELLNKY 161 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~---~~~i~~~~~~~l~~~ 161 (396)
...+...+..+|++++|+|+++... .....++..+.. .++| +++++||+|+.+.... .+....+...+.+..
T Consensus 91 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~ 169 (199)
T 2p5s_A 91 RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY 169 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccccccccCHHHHHHHHHHc
Confidence 9999999999999999999987332 222333333333 2677 5557899998642110 000112334444444
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+ ++++++||+++ .++.+++++|.+.+.
T Consensus 170 ~-----~~~~~~SA~~g----------~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 170 G-----ALFCETSAKDG----------SNIVEAVLHLAREVK 196 (199)
T ss_dssp T-----CEEEECCTTTC----------TTHHHHHHHHHHHHT
T ss_pred C-----CeEEEeeCCCC----------CCHHHHHHHHHHHHH
Confidence 3 58999999997 589999999877553
No 71
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=148.13 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=96.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh-
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY- 88 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~- 88 (396)
++.++|+++|+.|+|||||+++|++....... ...|.+.......+......+.+|||||++.+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 66 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH---------------EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD 66 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C---------------CCSSSSEEEEEEEETTEEEEEEEECCC------
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc---------------CccccceeEEEEEECCEEEEEEEEecCCCCccc
Confidence 45799999999999999999999864321100 11244443333333333346789999999884
Q ss_pred -HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc----CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 89 -IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV----GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 89 -~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~----~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
.......+..+|++++|+|+++... ....+++..+... ++| +++++||+|+.+..+.. ..+...+....+
T Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~~ 142 (175)
T 2nzj_A 67 KSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLARCREVS---VEEGRACAVVFD 142 (175)
T ss_dssp -CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCTTTCCSC---HHHHHHHHHHHT
T ss_pred hhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhccccccC---HHHHHHHHHHcC
Confidence 3444455678999999999986221 2223333334433 677 55578999997642110 112333334333
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||++| .++.+++++|.+.+
T Consensus 143 -----~~~~~~Sa~~g----------~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 143 -----CKFIETSATLQ----------HNVAELFEGVVRQL 167 (175)
T ss_dssp -----SEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred -----CeEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 57999999997 58999999987754
No 72
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.79 E-value=7.9e-19 Score=151.98 Aligned_cols=161 Identities=18% Similarity=0.179 Sum_probs=107.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
.+.++|+++|+.|+|||||+++|++...... ....|+......+..++..+.+|||||+++|.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ-----------------NILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR 81 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCS-----------------SCCCCSSEEEEEEECSSCEEEEEEECCSTTTG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCC-----------------CcCCccceeEEEEEECCEEEEEEECCCCHHHH
Confidence 4578999999999999999999976431000 01122223334455567889999999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH------cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~------~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
..+...+..+|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+... .+ ++.+.+....
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~ 155 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLRDAVT-SV----KVSQLLCLEN 155 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTSTTCCC-HH----HHHHHHTGGG
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCcccCCC-HH----HHHHHhChhh
Confidence 88888889999999999998732 2233334433333 3677 555789999976411 11 2333332112
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+.....+++++||+++ .++.+++++|.+.+.
T Consensus 156 ~~~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 156 IKDKPWHICASDAIKG----------EGLQEGVDWLQDQIQ 186 (190)
T ss_dssp CCSSCEEEEECBTTTT----------BTHHHHHHHHHHHC-
T ss_pred ccCCceEEEEccCCCC----------cCHHHHHHHHHHHHH
Confidence 2223578999999997 589999999987653
No 73
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.79 E-value=2.8e-18 Score=151.63 Aligned_cols=163 Identities=16% Similarity=0.135 Sum_probs=91.3
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCCh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGH 85 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~ 85 (396)
...+.++|+++|+.|+|||||+++|++..... +.. ..+.+.....+..++ ..+.||||||+
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~----------------~~~-~t~~~~~~~~~~~~~~~~~l~l~Dt~G~ 92 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPE----------------SYT-PTVFERYMVNLQVKGKPVHLHIWDTAGQ 92 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC-----------------------C-CCCCEEEEEEEEETTEEEEEEEEEC---
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHcCCCCC----------------CCC-CccceeEEEEEEECCEEEEEEEEECCCc
Confidence 34567999999999999999999998542110 000 111111112233333 46789999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCC-hhHH-HHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHH---------HH
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTR-EHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EI 152 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~-~qt~-e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i---------~~ 152 (396)
++|...+...+..+|++++|+|+++... .... .++..+... ++| +++++||+|+.+.....+.+ ..
T Consensus 93 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 171 (214)
T 2j1l_A 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDLRKDKSLVNKLRRNGLEPVTYH 171 (214)
T ss_dssp ------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGGGSCHHHHHHHHHTTCCCCCHH
T ss_pred hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhhccchhhhhhcccccCcccHH
Confidence 9998888888899999999999987321 1111 223333332 677 55578999998753322221 12
Q ss_pred HHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 153 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+...+.+.++. .+++++||++| .++.++++++.+.+
T Consensus 172 ~~~~~~~~~~~----~~~~~~SA~~g----------~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 172 RGQEMARSVGA----VAYLECSARLH----------DNVHAVFQEAAEVA 207 (214)
T ss_dssp HHHHHHHHTTC----SEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC----CEEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 34555555553 58999999997 58999999987654
No 74
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.79 E-value=1.5e-19 Score=166.01 Aligned_cols=156 Identities=24% Similarity=0.350 Sum_probs=110.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
+.++|+++|++|+|||||+++|++..... ....|+|.+.....++..+..+.+|||||+.+|..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v----------------~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 65 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRV----------------GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEE----------------EECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCccc----------------CCCCCeeEEEEEEEEEeCCCceEEEECcCCCcccc
Confidence 36899999999999999999998753111 11237777777777888888999999999877641
Q ss_pred ------------HHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy15217 91 ------------NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (396)
Q Consensus 91 ------------~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l 158 (396)
........+|++++|+|+++ ..........+...++|. ++|+||+|+.+.... ......+.
T Consensus 66 ~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~-ivv~NK~Dl~~~~~~----~~~~~~l~ 138 (274)
T 3i8s_A 66 ISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPC-IVALNMLDIAEKQNI----RIEIDALS 138 (274)
T ss_dssp ----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCE-EEEEECHHHHHHTTE----EECHHHHH
T ss_pred ccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCE-EEEEECccchhhhhH----HHHHHHHH
Confidence 11112358999999999987 234444555666779994 556899998643211 01122333
Q ss_pred hhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 159 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
+.++ +|++++||++| .|+.+|++++.+.++.
T Consensus 139 ~~lg-----~~~i~~SA~~g----------~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 139 ARLG-----CPVIPLVSTRG----------RGIEALKLAIDRYKAN 169 (274)
T ss_dssp HHHT-----SCEEECCCGGG----------HHHHHHHHHHHTCCCC
T ss_pred HhcC-----CCEEEEEcCCC----------CCHHHHHHHHHHHHhc
Confidence 3333 57999999998 5899999999887653
No 75
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.79 E-value=1.1e-18 Score=152.22 Aligned_cols=173 Identities=13% Similarity=0.089 Sum_probs=101.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCcccc----c--cccCCChhHhhcCceEEeeeeEEe------------
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKS----Y--DQIDAAPEEKARGITINTAHIEYE------------ 71 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~----~--~~~d~~~~e~~~g~t~~~~~~~~~------------ 71 (396)
++.++|+++|+.++|||||+++|++............ . ...+..........+.......+.
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 4579999999999999999999987532111000000 0 000000000000000000000000
Q ss_pred -----eCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChh-HHHHHHHHHH-cCCCeEEEEEeccCCCCHH
Q psy15217 72 -----TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQ-TREHILLARQ-VGVPYIVVFLNKADMVDDE 144 (396)
Q Consensus 72 -----~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~q-t~e~l~~~~~-~~ip~iIvviNK~D~~~~~ 144 (396)
.....+.||||||+++|...+...+..+|++++|+|++++..-+ ...++..+.. .+.| +++|+||+|+....
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~ 163 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI-IILVANKIDKNKFQ 163 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCE-EEEEEECTTCC-CC
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCc-EEEEEECCCccccc
Confidence 00167899999999999988888899999999999998743222 2333333333 4555 66678999932211
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 145 ELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 145 ~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.. .+++..+++..+ ++++++||+++ .++.+++++|.+.+
T Consensus 164 ~~----~~~~~~~~~~~~-----~~~~~~Sa~~~----------~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 164 VD----ILEVQKYAQDNN-----LLFIQTSAKTG----------TNIKNIFYMLAEEI 202 (208)
T ss_dssp SC----HHHHHHHHHHTT-----CEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred CC----HHHHHHHHHHcC-----CcEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 11 123455555543 58999999997 58999999887643
No 76
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.79 E-value=2.2e-18 Score=152.10 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=97.9
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC-CeeEEEEecCChhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-ARHYAHVDCPGHAD 87 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~ 87 (396)
.++.++|+++|+.|+|||||+++|++..... . ...++.+.....+... ...+.+|||||+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~------------~-----~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 66 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRD------------T-----QTSITDSSAIYKVNNNRGNSLTLIDLPGHES 66 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCC------------B-----CCCCSCEEEEEECSSTTCCEEEEEECCCCHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccc------------c-----cCCcceeeEEEEecCCCccEEEEEECCCChh
Confidence 4567999999999999999999998643110 0 0122222222222222 56799999999999
Q ss_pred hHH-HHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHH---------HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy15217 88 YIK-NMITGAAQMDGAILVCSAADGPMPQTREHILLAR---------QVGVPYIVVFLNKADMVDDEELLELVEIEIREL 157 (396)
Q Consensus 88 ~~~-~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~---------~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~ 157 (396)
|.. .+...+..+|++++|+|+++ ...+..+....+. ..++| +++++||+|+.+... .+.+...+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~~~~~~l~~~ 143 (214)
T 2fh5_B 67 LRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPS-LLIACNKQDIAMAKS-AKLIQQQLEKE 143 (214)
T ss_dssp HHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCE-EEEEEECTTSTTCCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCC-EEEEEECCCCCCccc-HHHHHHHHHHH
Confidence 988 45566789999999999986 2122222222211 12466 566789999975421 12222233333
Q ss_pred Hh-------------------hcCCC-----------CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 158 LN-------------------KYEFP-----------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 158 l~-------------------~~~~~-----------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
+. ..... +..++++++||++|.+... ..|+++++++|.+.
T Consensus 144 l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~----~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 144 LNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTG----SADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-----------CCBCHHHHHHHHHH
T ss_pred HHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcccc----ccChHHHHHHHHHh
Confidence 32 10000 0157899999999722111 14889999998764
No 77
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.78 E-value=1.1e-18 Score=151.40 Aligned_cols=158 Identities=19% Similarity=0.167 Sum_probs=105.6
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
..+.++|+++|+.|+|||||+++|++..... ...|+......+..++..+.+|||||+++|
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 80 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-------------------LQPTWHPTSEELAIGNIKFTTFDLGGHIQA 80 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCCC-------------------CCCCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCCc-------------------cccCCCCCeEEEEECCEEEEEEECCCCHHH
Confidence 3567899999999999999999998642110 011222223445566788999999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC-
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE- 162 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~- 162 (396)
...+...+..+|++++|+|+++.. +....+.+..+.. .++| ++++.||+|+.+.. .. +++.+.++...
T Consensus 81 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~----~~~~~~~~~~~~ 154 (190)
T 1m2o_B 81 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNAV-SE----AELRSALGLLNT 154 (190)
T ss_dssp TTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCC-CH----HHHHHHTTCSSC
T ss_pred HHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCCC-CH----HHHHHHhCCccc
Confidence 887778888999999999999743 2233333333322 4677 55678999997621 11 12344443221
Q ss_pred ------CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 163 ------FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 163 ------~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.....++++++||++| .|+.++++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~Sa~~g----------~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 155 TGSQRIEGQRPVEVFMCSVVMR----------NGYLEAFQWLSQY 189 (190)
T ss_dssp CC---CCSSCCEEEEECBTTTT----------BSHHHHHHHHHTT
T ss_pred cccccccccceEEEEEeECCcC----------CCHHHHHHHHHhh
Confidence 0113578999999997 6899999998764
No 78
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.78 E-value=1.3e-18 Score=146.76 Aligned_cols=156 Identities=17% Similarity=0.120 Sum_probs=99.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADY 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~ 88 (396)
+.++|+++|+.|+|||||+++|++..... .. . ..+.......+..++ ..+.+|||||+++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~------------~~----~-~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 65 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVE------------DY----E-PTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCS------------CC----C-TTCCEEEEEEEEETTEEEEEEEEECCC---C
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCC------------CC----C-CCcceEEEEEEEECCEEEEEEEEECCCcchh
Confidence 57999999999999999999998642110 00 0 111111112223333 46889999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
...+...+..+|++++|+|+++... ....+.+..+.. .++| +++++||+|+.+..+. ...+...+++..+
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 140 (168)
T 1u8z_A 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV---SVEEAKNRADQWN- 140 (168)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGGCCS---CHHHHHHHHHHHT-
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccccccCcc---CHHHHHHHHHHcC-
Confidence 9988888999999999999987321 112222222222 2677 5557899998753211 0123444444443
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .++.++++++.+.+
T Consensus 141 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 141 ----VNYVETSAKTR----------ANVDKVFFDLMREI 165 (168)
T ss_dssp ----CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ----CeEEEeCCCCC----------CCHHHHHHHHHHHH
Confidence 57999999997 58999999987643
No 79
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.78 E-value=1.1e-18 Score=147.17 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=102.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEe-eeeEEeeCCeeEEEEecCChhhhH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT-AHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
+.++|+++|+.|+|||||+++|++...... ......... ....+......+.+|||||+++|.
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEK----------------YDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT 65 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCS----------------CCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCCccceEEEEEEECCEEEEEEEEECCChHHHH
Confidence 468999999999999999999986421100 000111111 112223334568899999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
..+...+..+|++++|+|+++... .....++..+.. .++| +++++||+|+.+.... ..++...+.+.++
T Consensus 66 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 139 (167)
T 1c1y_A 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVV---GKEQGQNLARQWC-- 139 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT--
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECccccccccC---CHHHHHHHHHHcc--
Confidence 888888889999999999987211 112222222222 3677 5556899999753211 0123344444442
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
..+++++||++| .+++++++++.+.+
T Consensus 140 --~~~~~~~Sa~~~----------~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 140 --NCAFLESSAKSK----------INVNEIFYDLVRQI 165 (167)
T ss_dssp --SCEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred --CCcEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 368999999997 58999999987654
No 80
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.78 E-value=9.4e-19 Score=150.36 Aligned_cols=158 Identities=17% Similarity=0.129 Sum_probs=105.6
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
..+.++|+++|+.|+|||||+++|++...... ..|+......+..++..+.+|||||+++|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 78 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-------------------SPTIGSNVEEIVINNTRFLMWDIGGQESL 78 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEE-------------------ECCSSSSCEEEEETTEEEEEEEESSSGGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCcc-------------------CCcCceeeEEEEECCEEEEEEECCCCHhH
Confidence 34679999999999999999999986522100 01111122334456788999999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
...+...+..+|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+... .+ ++.+.+.....
T Consensus 79 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~ 152 (181)
T 2h17_A 79 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMT-VA----EISQFLKLTSI 152 (181)
T ss_dssp TCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHTTGGGC
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCcccCCC-HH----HHHHHhCcccc
Confidence 888888889999999999998853 2334444444432 4666 566789999976311 11 22222221112
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
....++++++||+++ .++.+++++|.+.
T Consensus 153 ~~~~~~~~~~Sa~~g----------~gi~~l~~~l~~~ 180 (181)
T 2h17_A 153 KDHQWHIQACCALTG----------EGLCQGLEWMMSR 180 (181)
T ss_dssp CSSCEEEEECBTTTT----------BTHHHHHHHHHTC
T ss_pred cCCceEEEEccCCCC----------cCHHHHHHHHHhh
Confidence 223468999999997 5899999998753
No 81
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.78 E-value=1.6e-18 Score=151.59 Aligned_cols=159 Identities=18% Similarity=0.112 Sum_probs=105.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
..++|+++|+.|+|||||+++|++....... ....|.+.......+......+.||||||+++|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 72 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAF--------------VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRT 72 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCC--------------CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCc--------------CCccceeEEEEEEEECCeEEEEEEEECCCchhhcc
Confidence 4689999999999999999999864211100 00113333333333333345789999999999999
Q ss_pred HHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
.+...+..+|++++|+|+++... .....++..+.. .++| +++++||+|+.+..... ..+...+.+.++
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 144 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDERVVS---SERGRQLADHLG---- 144 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSCCSC---HHHHHHHHHHHT----
T ss_pred hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCcccccC---HHHHHHHHHHCC----
Confidence 99999999999999999987321 222333344443 2566 55678999997632110 113344444444
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .++.+++++|.+.+
T Consensus 145 -~~~~~~Sa~~~----------~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 145 -FEFFEASAKDN----------INVKQTFERLVDVI 169 (203)
T ss_dssp -CEEEECBTTTT----------BSSHHHHHHHHHHH
T ss_pred -CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 47999999997 57888888776543
No 82
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.78 E-value=8.1e-19 Score=152.12 Aligned_cols=162 Identities=17% Similarity=0.132 Sum_probs=105.6
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
...+.++|+++|+.|+|||||+++|++..... ......|.+.......+......+.||||||+++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCcccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 33567899999999999999999998642110 0011123333333333322235788999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
|...+...+..+|++++|+|+++... .....++..+... ++| +++++||+|+.+..... .++...+.+..+
T Consensus 83 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~- 157 (191)
T 2a5j_A 83 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRRDVK---REEGEAFAREHG- 157 (191)
T ss_dssp TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT-
T ss_pred hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCCccccC---HHHHHHHHHHcC-
Confidence 98877788889999999999987321 2223344344432 566 55678999996531110 113344444443
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .++.+++++|.+.+
T Consensus 158 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 158 ----LIFMETSAKTA----------CNVEEAFINTAKEI 182 (191)
T ss_dssp ----CEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999997 58999999887644
No 83
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.78 E-value=6.1e-19 Score=150.88 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=107.3
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHA 86 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~ 86 (396)
..+.++|+++|+.|+|||||+++|++.... .+...+.+.+.....+..++ ..+.+|||||++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCC----------------CccCCCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 346799999999999999999999753211 11123455555545555555 578899999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCCChh-HHHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGPMPQ-TREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~~~q-t~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
+|...+...+..+|++++|+|+++...-+ ....+..+... ++| +++++||+|+.+..... ..+...+....+
T Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 144 (181)
T 3tw8_B 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVC-RILVGNKNDDPERKVVE---TEDAYKFAGQMG- 144 (181)
T ss_dssp GCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSE-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT-
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCCCchhcccC---HHHHHHHHHHcC-
Confidence 99888888889999999999998732211 12223333222 456 55678999987542111 112334444444
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||+++ .++.++++++.+.+
T Consensus 145 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 145 ----IQLFETSAKEN----------VNVEEMFNCITELV 169 (181)
T ss_dssp ----CCEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ----CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 47999999997 58999999987754
No 84
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.78 E-value=6.1e-19 Score=152.56 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=108.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
+..++|+++|+.++|||||+++|++...... .....|.+.......+......+.+|||||+++|.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 85 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPA--------------FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR 85 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--------------CCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCC--------------cCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh
Confidence 3468999999999999999999986421110 00112344433333343344578999999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
..+...+..+|++++|+|+++.. .....+++..+... ++| +++++||+|+.+..... .++...+.+.++
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 158 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDERVVP---AEDGRRLADDLG--- 158 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT---
T ss_pred hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccCCC---HHHHHHHHHHcC---
Confidence 88888889999999999998732 22233444444443 566 56678999997532110 123444555544
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .++.+++++|.+.+
T Consensus 159 --~~~~~~Sa~~g----------~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 159 --FEFFEASAKEN----------INVKQVFERLVDVI 183 (189)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred --CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 47999999997 58999999987654
No 85
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.78 E-value=9.8e-20 Score=176.01 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=114.9
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCe-eEEEEecCChhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR-HYAHVDCPGHAD 87 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~~~iiDtpG~~~ 87 (396)
....++|+++|+.|+|||||+++|++... ...+...|+|++.....++..+. .+.||||||+.+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~---------------~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d 95 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNV---------------SIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD 95 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETTTEEEEEEECSSTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCC---------------CccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc
Confidence 34578999999999999999999875421 11233457787777777776655 899999999987
Q ss_pred h-------HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 88 Y-------IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 88 ~-------~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
| ...+...+..+|++++|+|+ +...++.+++..+...++| +++|+||+|+.+.... +....+.+.
T Consensus 96 ~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~p-iIvV~NK~Dl~~~~~~-----~~~~~l~~~ 167 (423)
T 3qq5_A 96 VGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIP-FVVVVNKIDVLGEKAE-----ELKGLYESR 167 (423)
T ss_dssp CCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCC-EEEECCCCTTTTCCCT-----HHHHHSSCC
T ss_pred ccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCC-EEEEEeCcCCCCccHH-----HHHHHHHHH
Confidence 6 34466677889999999999 7788999999999999999 4556899999875321 122333333
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
+ .++++++||++| .++++++++|.+.++.+
T Consensus 168 ~-----g~~v~~vSAktg----------~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 168 Y-----EAKVLLVSALQK----------KGFDDIGKTISEILPGD 197 (423)
T ss_dssp T-----TCCCCCCSSCCT----------TSTTTHHHHHHHHSCCC
T ss_pred c-----CCCEEEEECCCC----------CCHHHHHHHHHHhhhhh
Confidence 3 358999999997 58889999999888544
No 86
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.78 E-value=8.6e-19 Score=148.47 Aligned_cols=158 Identities=16% Similarity=0.097 Sum_probs=98.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~ 87 (396)
...++|+++|+.|+|||||+++|++..... +....++.+.....+..+ ...+.+|||||+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 67 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFND----------------KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCS----------------SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCc----------------CCCCccceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 457999999999999999999998642110 001122222222233333 34678999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
|...+...+..+|++++|+|+++... .....++..+.. .++| +++++||+|+.+..... .++...+.+..+
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 142 (170)
T 1z08_A 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKERHVS---IQEAESYAESVG- 142 (170)
T ss_dssp -----CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT-
T ss_pred hhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccccC---HHHHHHHHHHcC-
Confidence 98888888889999999999987322 222233333332 3566 55578999997531110 123444555443
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||+++ .++.++++++.+.+
T Consensus 143 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 143 ----AKHYHTSAKQN----------KGIEELFLDLCKRM 167 (170)
T ss_dssp ----CEEEEEBTTTT----------BSHHHHHHHHHHHH
T ss_pred ----CeEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 57999999997 58999999987654
No 87
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=9.4e-19 Score=151.70 Aligned_cols=160 Identities=16% Similarity=0.111 Sum_probs=110.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
...++|+++|+.++|||||+++|++...... .....|.+.......+......+.||||||+++|.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 86 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPA--------------FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR 86 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCC--------------EEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcc--------------cCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 3568999999999999999999986531110 00112444444445555566789999999999999
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~ 165 (396)
..+...+..+|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+..... ..+...+.+..+
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 159 (191)
T 3dz8_A 87 TITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEERVVP---TEKGQLLAEQLG--- 159 (191)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT---
T ss_pred HHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccC---HHHHHHHHHHcC---
Confidence 99999999999999999998721 1223334444444 3566 55678999986531111 112344444444
Q ss_pred CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 166 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .++.++++++.+.+
T Consensus 160 --~~~~~~Sa~~~----------~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 160 --FDFFEASAKEN----------ISVRQAFERLVDAI 184 (191)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred --CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 47999999997 58999999887654
No 88
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.78 E-value=3.4e-18 Score=148.89 Aligned_cols=163 Identities=13% Similarity=0.113 Sum_probs=102.0
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeE--Ee-eCCeeEEEEecCC
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE--YE-TKARHYAHVDCPG 84 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~--~~-~~~~~~~iiDtpG 84 (396)
..+..++|+++|..++|||||+++|++..... ...+.+....... +. .....+.+|||||
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G 78 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN-----------------ETLFLESTNKIYKDDISNSSFVNFQIWDFPG 78 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGG-----------------GGGGCCCCCSCEEEEECCTTSCCEEEEECCS
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc-----------------ceeeeccccceeeeeccCCCeeEEEEEECCC
Confidence 44678999999999999999999887532111 0111111111122 21 3456789999999
Q ss_pred hhhhHHHH---HhhhhcCCEEEEEEecCCCCChhHHHHH-HHHHH-----cCCCeEEEEEeccCCCCHHHH---HHHHHH
Q psy15217 85 HADYIKNM---ITGAAQMDGAILVCSAADGPMPQTREHI-LLARQ-----VGVPYIVVFLNKADMVDDEEL---LELVEI 152 (396)
Q Consensus 85 ~~~~~~~~---~~~~~~~d~~llVvda~~g~~~qt~e~l-~~~~~-----~~ip~iIvviNK~D~~~~~~~---~~~i~~ 152 (396)
+++|...+ ...+..+|++++|+|+++.. .+..+.+ ..+.. .++| ++++.||+|+.+.+.. .+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~v~~ 156 (196)
T 3llu_A 79 QMDFFDPTFDYEMIFRGTGALIYVIDAQDDY-MEALTRLHITVSKAYKVNPDMN-FEVFIHKVDGLSDDHKIETQRDIHQ 156 (196)
T ss_dssp SCCTTCTTCCHHHHHHTCSEEEEEEETTSCC-HHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred CHHHHhhhhhcccccccCCEEEEEEECCCch-HHHHHHHHHHHHHHHhcCCCCc-EEEEEeccccCchhhhhHHHhHHHH
Confidence 99987776 67788999999999999863 2332322 22222 2666 5567899999875322 122222
Q ss_pred H-HHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 153 E-IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 153 ~-~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
+ ...+.+ .......++++++||++ . ++.++++.+.+.
T Consensus 157 ~~~~~~~~-~~~~~~~~~~~e~Sa~~-~----------~v~~~f~~l~~~ 194 (196)
T 3llu_A 157 RANDDLAD-AGLEKLHLSFYLTSIYD-H----------SIFEAFSKVVQK 194 (196)
T ss_dssp HHHHHHHH-TTCTTSCEEEEEECTTS-T----------HHHHHHHHHHHH
T ss_pred HHHHHHHH-hhhhcCCcceEEEEech-h----------hHHHHHHHHHHH
Confidence 2 233333 22212357899999998 4 889999988764
No 89
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.78 E-value=1.5e-18 Score=146.14 Aligned_cols=156 Identities=20% Similarity=0.176 Sum_probs=101.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADY 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~ 88 (396)
+.++|+++|+.|+|||||+++|++..... .. ...+. +.....+..++ ..+.+|||||+++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------~~----~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~ 64 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE------------KY----DPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQF 64 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS------------CC----CTTCC-EEEEEEEEETTEEEEEEEEECCCTTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcc------------cC----CCCcc-eeEEEEEEECCEEEEEEEEECCCchhh
Confidence 46899999999999999999998642110 00 00111 11122233333 45889999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
...+...+..+|++++|+|+.+... ......+..+.. .++| +++++||+|+.+..+.. ..+...+.+..+
T Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 139 (167)
T 1kao_A 65 ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESEREVS---SSEGRALAEEWG- 139 (167)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCCSC---HHHHHHHHHHHT-
T ss_pred HHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccccCC---HHHHHHHHHHhC-
Confidence 9888888899999999999987321 112222222222 3677 55578999986532111 112334444444
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||+++ .++.++++++.+.+
T Consensus 140 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 140 ----CPFMETSAKSK----------TMVDELFAEIVRQM 164 (167)
T ss_dssp ----SCEEEECTTCH----------HHHHHHHHHHHHHH
T ss_pred ----CCEEEecCCCC----------cCHHHHHHHHHHHH
Confidence 47999999997 58999999987643
No 90
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=2.3e-18 Score=145.96 Aligned_cols=160 Identities=18% Similarity=0.155 Sum_probs=103.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
..++|+++|+.|+|||||+++|++....... . ...+.+.. ...........+.+|||||+++|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------~------~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~ 66 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESY--------I------PTVEDTYR-QVISCDKSICTLQITDTTGSHQFPA 66 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSC--------C------CCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCC--------C------CCccccEE-EEEEECCEEEEEEEEECCCchhhHH
Confidence 4689999999999999999999864211000 0 00011111 1112222334688999999999998
Q ss_pred HHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH-----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 91 NMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~-----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
.+...+..+|++++|+|+++.. .......+..+.. .++| +++++||+|+.+..+... .+...+.+..+
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~~~v~~---~~~~~~~~~~~-- 140 (172)
T 2erx_A 67 MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDESPSREVQS---SEAEALARTWK-- 140 (172)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGGCCSCH---HHHHHHHHHHT--
T ss_pred HHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccccccCH---HHHHHHHHHhC--
Confidence 8888889999999999998632 1222333333333 2677 555789999875421111 12233334333
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
.+++++||+++ .++.++++++.+.+..
T Consensus 141 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 141 ---CAFMETSAKLN----------HNVKELFQELLNLEKR 167 (172)
T ss_dssp ---CEEEECBTTTT----------BSHHHHHHHHHHTCCS
T ss_pred ---CeEEEecCCCC----------cCHHHHHHHHHHHHhh
Confidence 57999999997 5899999999886654
No 91
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.9e-18 Score=150.02 Aligned_cols=161 Identities=15% Similarity=0.089 Sum_probs=106.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~ 87 (396)
+..++|+++|+.++|||||+++|++..... .. .. ..+... ...+..++ ..+.+|||||+++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~---~~------~~-----t~~~~~---~~~~~~~~~~~~~~i~D~~G~~~ 78 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPE---EY------VP-----TVFDHY---AVSVTVGGKQYLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCC---SC------CC-----SSCCCE---EEEEESSSCEEEEEEECCCCSSS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC---CC------CC-----ccccee---EEEEEECCEEEEEEEEECCCCcc
Confidence 457899999999999999999998652110 00 00 001111 11233333 5678999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCC-hhHH-HHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHH---------HHHHH
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTR-EHILLARQV--GVPYIVVFLNKADMVDDEELLEL---------VEIEI 154 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~-~qt~-e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~---------i~~~~ 154 (396)
|...+...+..+|++++|+|+++... .... .++..+... ++| +++++||+|+.+.....+. ..++.
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 157 (194)
T 2atx_A 79 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQG 157 (194)
T ss_dssp STTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHH
T ss_pred hhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcccccchhhcccccCcccCHHHH
Confidence 98888888889999999999987321 2222 334444444 778 5556899999864322111 11244
Q ss_pred HHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 155 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
..+.+.+++ .+++++||+++ .++.++++++.+.+
T Consensus 158 ~~~~~~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~i 191 (194)
T 2atx_A 158 QKLAKEIGA----CCYVECSALTQ----------KGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHHHTC----SCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHcCC----cEEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 555555554 47999999997 58999999987654
No 92
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.78 E-value=1.5e-18 Score=148.52 Aligned_cols=161 Identities=18% Similarity=0.156 Sum_probs=93.8
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC---CeeEEEEecCCh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK---ARHYAHVDCPGH 85 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~~~iiDtpG~ 85 (396)
.++.++|+++|+.|+|||||+++|++..... +....++.+.....+..+ ...+.+|||||+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQ----------------QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCT----------------TC---CCCSCEEEEECCSSSCCEEEEEECCC--
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCc----------------ccCCccceEEEEEEEEEcCCcEEEEEEEECCCC
Confidence 4568999999999999999999998642110 001112222222233322 457899999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH-------cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ-------VGVPYIVVFLNKADMVDDEELLELVEIEIREL 157 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~-------~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~ 157 (396)
++|...+...+..+|++++|+|+++... ....+++..+.. .++| +++++||+|+.+.+... ...+...+
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~v--~~~~~~~~ 145 (182)
T 1ky3_A 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDAEESKKIV--SEKSAQEL 145 (182)
T ss_dssp --------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTSCGGGCCS--CHHHHHHH
T ss_pred hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCccccccccC--CHHHHHHH
Confidence 9999888888999999999999987322 112222222222 4667 55568999996432100 01123344
Q ss_pred HhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 158 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 158 l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+... ..+++++||+++ .++.++++++.+.+
T Consensus 146 ~~~~~----~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 146 AKSLG----DIPLFLTSAKNA----------INVDTAFEEIARSA 176 (182)
T ss_dssp HHHTT----SCCEEEEBTTTT----------BSHHHHHHHHHHHH
T ss_pred HHhcC----CCeEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 43222 368999999997 58999999887643
No 93
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.78 E-value=6.2e-19 Score=151.50 Aligned_cols=158 Identities=18% Similarity=0.116 Sum_probs=83.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~ 87 (396)
...++|+++|+.|+|||||+++|++.... .+...+++.+.....+..++ ..+.||||||+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN----------------STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp SEEEEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence 35799999999999999999999853211 11122344444434444444 6788999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
|...+...+..+|++++|+|+++... ....+++..+... ++| +++++||+|+.+.... ..++...+.+..+
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~~~~~~~~~- 144 (183)
T 2fu5_C 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKCDVNDKRQV---SKERGEKLALDYG- 144 (183)
T ss_dssp ----CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC--CCSCCCS---CHHHHHHHHHHHT-
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccCCccCcC---CHHHHHHHHHHcC-
Confidence 98888888889999999999987321 2233344444432 566 5567899999753111 0113344444444
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .++.++++++.+.+
T Consensus 145 ----~~~~~~Sa~~~----------~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 145 ----IKFMETSAKAN----------INVENAFFTLARDI 169 (183)
T ss_dssp ----CEEEECCC-------------CCHHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999997 58999999887654
No 94
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.78 E-value=1.4e-18 Score=149.35 Aligned_cols=159 Identities=19% Similarity=0.216 Sum_probs=103.1
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCe--eEEEEecCCh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGH 85 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpG~ 85 (396)
...+.++|+++|+.|+|||||+++|++..... .. ...+.... ...+..++. .+.+|||||+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~------------~~----~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~ 76 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVD------------DY----DPTIEDSY-LKHTEIDNQWAILDVLDTAGQ 76 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCS------------CC----CTTCCEEE-EEEEEETTEEEEEEEEECCSC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCC------------CC----CCCcccee-EEEEEeCCcEEEEEEEECCCc
Confidence 34568999999999999999999998542110 00 00111121 222333443 4567999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHH----HHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLA----RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~----~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
++|...+...+..+|++++|+|+++... ....+.+..+ ...++| +++++||+|+.+.... ..++...+.+.
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~v---~~~~~~~~~~~ 152 (183)
T 3kkq_A 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLRKV---TRDQGKEMATK 152 (183)
T ss_dssp GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTCCS---CHHHHHHHHHH
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhccCc---CHHHHHHHHHH
Confidence 9998888888889999999999987321 1122222222 224677 5557899998753111 11234445555
Q ss_pred cCCCCCCCeEEEeccc-ccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 161 YEFPGNDIPIIKGSAK-LALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~-~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++ ++++++||+ ++ .++.++++++.+.+
T Consensus 153 ~~-----~~~~~~Sa~~~~----------~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 153 YN-----IPYIETSAKDPP----------LNVDKTFHDLVRVI 180 (183)
T ss_dssp HT-----CCEEEEBCSSSC----------BSHHHHHHHHHHHH
T ss_pred hC-----CeEEEeccCCCC----------CCHHHHHHHHHHHH
Confidence 44 579999999 76 58999999887643
No 95
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.78 E-value=1.9e-18 Score=151.12 Aligned_cols=161 Identities=17% Similarity=0.146 Sum_probs=106.3
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHA 86 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~ 86 (396)
+...++|+++|+.|+|||||+++|++....... ...++.+.. ..+..++ ..+.||||||++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY----------------VPTVFENYI-ADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSC----------------CCSSCCCCE-EEEEETTEEEEEEEECCCCSG
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCccc----------------CCcccceEE-EEEEECCEEEEEEEEECCCch
Confidence 345789999999999999999999864321100 001111111 1123333 468899999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCCC-hhH-HHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHH---------HHH
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGPM-PQT-REHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EIE 153 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~~-~qt-~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i---------~~~ 153 (396)
+|...+...+..+|++++|+|+++... ... ..++..+... ++| +++++||+|+.+.....+.+ .++
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 163 (201)
T 2gco_A 85 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQDEHTRRELAKMKQEPVRSEE 163 (201)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGTTCHHHHHHHHTTTCCCCCHHH
T ss_pred hHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhhcCccchhhhcccccCcCCHHH
Confidence 998888888889999999999987321 111 2333444444 778 55568999998753322211 123
Q ss_pred HHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 154 IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 154 ~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
...+.+.++. .+++++||+++ .++.++++++.+.
T Consensus 164 ~~~~~~~~~~----~~~~~~SA~~g----------~gi~~l~~~i~~~ 197 (201)
T 2gco_A 164 GRDMANRISA----FGYLECSAKTK----------EGVREVFEMATRA 197 (201)
T ss_dssp HHHHHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHH
T ss_pred HHHHHHhCCC----cEEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 4455555554 48999999997 5899999988764
No 96
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.77 E-value=9.7e-19 Score=148.05 Aligned_cols=157 Identities=17% Similarity=0.137 Sum_probs=102.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADY 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~ 88 (396)
..++|+++|+.|+|||||+++|++.... .+...+++.+.....+..+ ...+.+|||||+++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 65 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFN----------------PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCC----------------C-------CCEEEEEEESSSCEEEEEEECCTTGGGT
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCC----------------CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhh
Confidence 3689999999999999999999864210 0111122222222333333 356889999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
...+...+..+|++++|+|+++... ......+..+... ++| +++++||+|+.+..... ++...+.+..+
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~~-- 138 (170)
T 1g16_A 66 RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVTA----DQGEALAKELG-- 138 (170)
T ss_dssp SCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCCSCH----HHHHHHHHHHT--
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCccCH----HHHHHHHHHcC--
Confidence 8877788889999999999987321 2223333334332 566 55678999995421111 12334444444
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
++++++||+++ .++.++++++.+.+.
T Consensus 139 ---~~~~~~Sa~~~----------~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 139 ---IPFIESSAKND----------DNVNEIFFTLAKLIQ 164 (170)
T ss_dssp ---CCEEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred ---CeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 47999999997 589999999877553
No 97
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.77 E-value=1.6e-18 Score=150.59 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=102.5
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
.++.++|+++|+.|+|||||+++|+...... ...|+......++..+..+.+|||||+++|
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 86 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-------------------TIPTIGFNVETVEYKNICFTVWDVGGQDKI 86 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-------------------EEEETTEEEEEEEETTEEEEEEECC-----
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-------------------cCCcCceeEEEEEECCEEEEEEECCCCHhH
Confidence 3567999999999999999999996431100 011222223345557788999999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
...+...+..+|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+... .+. +.+.+.....
T Consensus 87 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~~----i~~~~~~~~~ 160 (192)
T 2b6h_A 87 RPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQDMPNAMP-VSE----LTDKLGLQHL 160 (192)
T ss_dssp CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HHH----HHHHTTGGGC
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCCCC-HHH----HHHHhCcccc
Confidence 888778888999999999998743 2233333333332 2566 556789999976411 111 2222221112
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.....+++++||+++ .++++++++|.+.+.
T Consensus 161 ~~~~~~~~~~SA~~g----------~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 161 RSRTWYVQATCATQG----------TGLYDGLDWLSHELS 190 (192)
T ss_dssp SSCCEEEEECBTTTT----------BTHHHHHHHHHHHTT
T ss_pred cCCceEEEECcCCCc----------CCHHHHHHHHHHHHh
Confidence 223468999999997 589999999987653
No 98
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.77 E-value=1.5e-18 Score=151.59 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=102.6
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
..+..+|+++|+.|+|||||+++|.+..... ...|+......+..++..+.+|||||+++|
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-------------------~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-------------------HVPTLHPTSEELTIAGMTFTTFDLGGHIQA 82 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEETTEEEEEEEECC----
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCCc-------------------cCCCCCceeEEEEECCEEEEEEECCCcHhh
Confidence 3567899999999999999999997532110 011222223345556788999999999998
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC-
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE- 162 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~- 162 (396)
...+...+..+|++++|+|+++.. +....+.+..+.. .++| ++++.||+|+.+. ... +++.+.+....
T Consensus 83 ~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~----~~~~~~~~~~~~ 156 (198)
T 1f6b_A 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKIDRPEA-ISE----ERLREMFGLYGQ 156 (198)
T ss_dssp CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTC-CCH----HHHHHHHTCTTT
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCcccc-CCH----HHHHHHhCcccc
Confidence 877777888999999999998743 2333334433332 3677 5557899999752 111 13344443221
Q ss_pred --------CC---CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 163 --------FP---GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 163 --------~~---~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+. ....+++++||++| .|+++++++|.+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~SA~~g----------~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 157 TTGKGSVSLKELNARPLEVFMCSVLKR----------QGYGEGFRWMAQYI 197 (198)
T ss_dssp CCCSSCCCTTTCCSCCEEEEECBTTTT----------BSHHHHHHHHHTTC
T ss_pred cccccccccccccCceEEEEEEECCCC----------CCHHHHHHHHHHhc
Confidence 10 13468999999997 68999999987643
No 99
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.77 E-value=1e-18 Score=147.55 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=103.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
...++|+++|+.|+|||||+++|++....... ....+.+.......+......+.+|||||+++|.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 68 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDY--------------KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFD 68 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCS--------------SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTT
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCC--------------CCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHH
Confidence 35799999999999999999999864211100 0011222222222222223478899999999988
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH--cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
..+...+..+|++++|+|+++.. ......++..+.. .++| +++++||+|+.+..+. ..+++..+.+..+
T Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~---- 140 (168)
T 1z2a_A 69 AITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSCI---KNEEAEGLAKRLK---- 140 (168)
T ss_dssp CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGCSS---CHHHHHHHHHHHT----
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCccccc---CHHHHHHHHHHcC----
Confidence 77777888999999999998732 1222233333322 3677 5556899998753211 0123344445444
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||+++ .++.+++++|.+.+
T Consensus 141 -~~~~~~Sa~~~----------~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 141 -LRFYRTSVKED----------LNVSEVFKYLAEKH 165 (168)
T ss_dssp -CEEEECBTTTT----------BSSHHHHHHHHHHH
T ss_pred -CeEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 47999999997 58899999887643
No 100
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.77 E-value=7.3e-19 Score=156.42 Aligned_cols=169 Identities=15% Similarity=0.132 Sum_probs=103.6
Q ss_pred CCcccccCC-CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeE
Q psy15217 1 MAKSKFERT-KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHY 77 (396)
Q Consensus 1 ~~~~~~~~~-~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~ 77 (396)
|....+.+. ...++|+++|+.++|||||+++|++..... ......|.+... ..+..++ ..+
T Consensus 1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--------------~~~~t~~~~~~~--~~~~~~~~~~~~ 64 (223)
T 3cpj_B 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNM--------------DSKSTIGVEFAT--RTLEIEGKRIKA 64 (223)
T ss_dssp ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------------------CCSEEE--EEEEETTEEEEE
T ss_pred CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCcccceeEE--EEEEECCEEEEE
Confidence 444444433 457899999999999999999998642110 001111222222 2333444 578
Q ss_pred EEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHH
Q psy15217 78 AHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIE 153 (396)
Q Consensus 78 ~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~ 153 (396)
.||||||+++|...+...+..+|++++|+|+++... ....+++..+... ++| +++++||+|+.+..+.. ..+
T Consensus 65 ~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~ 140 (223)
T 3cpj_B 65 QIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA-VGLIGNKSDLAHLRAVP---TEE 140 (223)
T ss_dssp EEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CE-EEEEECCGGGGGGCCSC---HHH
T ss_pred EEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccccC---HHH
Confidence 999999999998888888889999999999987322 2223333344433 566 55678999997531110 113
Q ss_pred HHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 154 IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 154 ~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
...+.+..+ ++++++||+++ .++.+++++|.+.+..
T Consensus 141 ~~~~~~~~~-----~~~~~~Sa~~~----------~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 141 SKTFAQENQ-----LLFTETSALNS----------ENVDKAFEELINTIYQ 176 (223)
T ss_dssp HHHHHHHTT-----CEEEECCCC-C----------CCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC-----CEEEEEeCCCC----------CCHHHHHHHHHHHHHH
Confidence 344444443 58999999997 6899999998876643
No 101
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.77 E-value=2.9e-18 Score=150.05 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=104.6
Q ss_pred cCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCC
Q psy15217 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPG 84 (396)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG 84 (396)
....+.++|+++|+.|+|||||+++|++..... . ..+.+.......+..++ ..+.||||||
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~------------~-----~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVE------------D-----YEPTKADSYRKKVVLDGEEVQIDILDTAG 71 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCT------------T-----CCTTCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCC------------C-----CCCccceEEEEEEEECCEEEEEEEEcCCC
Confidence 345578999999999999999999998642100 0 00111111122333343 4688999999
Q ss_pred hhhhHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q psy15217 85 HADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (396)
Q Consensus 85 ~~~~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~ 159 (396)
+++|...+...+..+|++++|+|+++... .....++..+.. .++| +++++||+|+.+..+. ...++..+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~ 147 (206)
T 2bov_A 72 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV---SVEEAKNRAE 147 (206)
T ss_dssp TTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCGGGCCS---CHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCccccccc---cHHHHHHHHH
Confidence 99999988888999999999999987321 122222223322 2677 5557899999754211 0123444444
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
..+ .+++++||++| .++.+++++|.+.+
T Consensus 148 ~~~-----~~~~~~Sa~~g----------~gi~~l~~~l~~~i 175 (206)
T 2bov_A 148 QWN-----VNYVETSAKTR----------ANVDKVFFDLMREI 175 (206)
T ss_dssp HHT-----CEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred HhC-----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 444 57999999997 58999999887654
No 102
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.77 E-value=2.4e-18 Score=150.87 Aligned_cols=159 Identities=17% Similarity=0.097 Sum_probs=103.9
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHA 86 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~ 86 (396)
.++.++|+++|+.|+|||||+++|++..... ....+++.+.....+..+ ...+.||||||++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSN----------------QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCS----------------SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCC----------------CCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 4568999999999999999999998642111 011133334333334433 3578999999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH-------cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ-------VGVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~-------~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l 158 (396)
+|...+...+..+|++++|+|+++... .....++..+.. .++| +++++||+|+.+.....+ ++..+.
T Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~----~~~~~~ 143 (207)
T 1vg8_A 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDLENRQVATK----RAQAWC 143 (207)
T ss_dssp GGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTSSCCCSCHH----HHHHHH
T ss_pred HHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCCcccccCHH----HHHHHH
Confidence 998877788889999999999987322 111222222221 3677 555689999974321111 233333
Q ss_pred hhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 159 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+.. ...+++++||++| .++.+++++|.+.+
T Consensus 144 ~~~----~~~~~~~~Sa~~g----------~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 144 YSK----NNIPYFETSAKEA----------INVEQAFQTIARNA 173 (207)
T ss_dssp HHT----TSCCEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred Hhc----CCceEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 322 2368999999997 58999999887654
No 103
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.77 E-value=4.2e-19 Score=161.19 Aligned_cols=151 Identities=21% Similarity=0.210 Sum_probs=105.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHH-
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN- 91 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~- 91 (396)
.+|+++|++|+|||||+++|++.....+ ...|+|.+.....+...+..+.||||||+.++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~----------------~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 65 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVG----------------NWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEE----------------ECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCcc----------------CCCCceEEEEEEEEEECCeEEEEEeCCCcccccccc
Confidence 4899999999999999999986531111 12277777777778888889999999998776531
Q ss_pred ---------HHhhh--hcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 92 ---------MITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 92 ---------~~~~~--~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
....+ ..+|++++|+|+++ ..........+..+++| +++|+||+|+.+...... ....+.+.
T Consensus 66 ~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~p-vilv~NK~Dl~~~~~~~~----~~~~l~~~ 138 (256)
T 3iby_A 66 EGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKP-VVVALNMMDIAEHRGISI----DTEKLESL 138 (256)
T ss_dssp ---CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSC-EEEEEECHHHHHHTTCEE----CHHHHHHH
T ss_pred cCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCC-EEEEEEChhcCCcCCcHH----HHHHHHHH
Confidence 22233 67999999999987 23333344455566888 555789999865321100 12223333
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
++ +|++++||++| .|+.+|++++.+.
T Consensus 139 lg-----~~vi~~SA~~g----------~gi~el~~~i~~~ 164 (256)
T 3iby_A 139 LG-----CSVIPIQAHKN----------IGIPALQQSLLHC 164 (256)
T ss_dssp HC-----SCEEECBGGGT----------BSHHHHHHHHHTC
T ss_pred cC-----CCEEEEECCCC----------CCHHHHHHHHHhh
Confidence 33 58999999997 6999999999875
No 104
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=3.6e-18 Score=150.04 Aligned_cols=163 Identities=16% Similarity=0.136 Sum_probs=105.5
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHA 86 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~ 86 (396)
....++|+++|+.|+|||||+++|++..... +....++... ...+..++ ..+.||||||++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~ 84 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPE----------------VYVPTVFENY-VADIEVDGKQVELALWDTAGQE 84 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-----------------------CCEE-EEEEEETTEEEEEEEEECTTCT
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCC----------------cCCCcccceE-EEEEEECCEEEEEEEEECCCcH
Confidence 3457899999999999999999998642110 0000111111 11233333 467899999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCCC-hhH-HHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHHH---------HH
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGPM-PQT-REHILLARQV--GVPYIVVFLNKADMVDDEELLELVE---------IE 153 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~~-~qt-~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i~---------~~ 153 (396)
+|...+...+..+|++++|+|+++... ... ..++..+... ++| +++++||+|+.+.....+.+. .+
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 163 (207)
T 2fv8_A 85 DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDLRSDEHVRTELARMKQEPVRTDD 163 (207)
T ss_dssp TCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHH
T ss_pred HHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhccccchhhhhhcccCCCCHHH
Confidence 998877888889999999999987321 111 2333444443 778 555789999976533222211 12
Q ss_pred HHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 154 IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 154 ~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
...+.+.++. .+++++||++| .++++++++|.+.+.
T Consensus 164 ~~~~~~~~~~----~~~~~~SA~~g----------~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 164 GRAMAVRIQA----YDYLECSAKTK----------EGVREVFETATRAAL 199 (207)
T ss_dssp HHHHHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC----CEEEEeeCCCC----------CCHHHHHHHHHHHHH
Confidence 3344444443 48999999997 589999999887654
No 105
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.77 E-value=1.9e-18 Score=145.83 Aligned_cols=156 Identities=22% Similarity=0.170 Sum_probs=87.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHHH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 91 (396)
.++|+++|+.|+|||||+++|++..... .....|.+.. ....+......+.+|||||+++|...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP---------------EAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE-EEEEETTEEEEEEEEECC--------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC---------------CCCccccceE-EEEEECCEEEEEEEEECCCCccchhh
Confidence 5899999999999999999997432111 0111233332 12223333456789999999999888
Q ss_pred HHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15217 92 MITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (396)
Q Consensus 92 ~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~ 166 (396)
....+..+|++++|+|.++... .....++..+.. .++| +++++||+|+.+..+... .+...+....+
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~---- 137 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSREVSV---DEGRACAVVFD---- 137 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSCCSCH---HHHHHHHHHTT----
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccccccccccCH---HHHHHHHHHhC----
Confidence 8888899999999999987221 222233333333 2677 555689999975421111 12333444433
Q ss_pred CCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 167 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||++| .+++++++++.+.+
T Consensus 138 -~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 138 -CKFIETSAALH----------HNVQALFEGVVRQI 162 (166)
T ss_dssp -CEEEECBGGGT----------BSHHHHHHHHHHHH
T ss_pred -CcEEEeccCCC----------CCHHHHHHHHHHHH
Confidence 58999999997 58999999987643
No 106
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.77 E-value=3.2e-18 Score=147.14 Aligned_cols=159 Identities=16% Similarity=0.115 Sum_probs=103.7
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCCh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGH 85 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~ 85 (396)
.+.+.++|+++|+.|+|||||+++|++..... .. ...+.......+..++ ..+.||||||+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~------------~~-----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~ 76 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVE------------DY-----EPTKADSYRKKVVLDGEEVQIDILDTAGQ 76 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCC------------SC-----CTTCCEEEEEEEEETTEEEEEEEEECCCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCC------------cC-----CCccceEEEEEEEECCEEEEEEEEECCCC
Confidence 44578999999999999999999998642100 00 0111111122233333 46889999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
++|...+...+..+|++++|+|+++... .....++..+.. .++| +++++||+|+.+.... ...++..+++.
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~ 152 (187)
T 2a9k_A 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV---SVEEAKNRAEQ 152 (187)
T ss_dssp TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGGGCCS---CHHHHHHHHHH
T ss_pred cccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCcc---CHHHHHHHHHH
Confidence 9999988888999999999999987321 122222222222 2677 5557899998653111 11234455555
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+ ++++++||+++ .++.+++++|.+.+
T Consensus 153 ~~-----~~~~~~Sa~~~----------~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 153 WN-----VNYVETSAKTR----------ANVDKVFFDLMREI 179 (187)
T ss_dssp TT-----CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred cC-----CeEEEeCCCCC----------CCHHHHHHHHHHHH
Confidence 44 57999999997 58999999987654
No 107
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=152.39 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=101.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~ 87 (396)
...++|+++|+.++|||||+++|++..... +....++.+.....+..++ ..+.||||||+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 86 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ----------------DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC----------------------------CCEEEEEEEETTEEEEEEEECCTTHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc----------------cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh
Confidence 457999999999999999999998542211 1111222222223333344 5789999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
|...+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+.... ...+...+.+..+
T Consensus 87 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~~~~~~~~~- 161 (200)
T 2o52_A 87 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKKDLDPEREV---TFLEASRFAQENE- 161 (200)
T ss_dssp HSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCccccccc---CHHHHHHHHHHcC-
Confidence 88777778889999999999987321 122333333333 2566 5667899998643111 0112344444443
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .++.+++++|.+.+
T Consensus 162 ----~~~~~~SA~~g----------~gi~~l~~~l~~~i 186 (200)
T 2o52_A 162 ----LMFLETSALTG----------ENVEEAFLKCARTI 186 (200)
T ss_dssp ----CEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 58999999997 58999998887654
No 108
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.77 E-value=2.1e-18 Score=149.15 Aligned_cols=162 Identities=14% Similarity=0.134 Sum_probs=101.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~ 87 (396)
++.++|+++|+.++|||||+++|++...... ....++.+.....+..++ ..+.||||||+++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR----------------TEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSS----------------CCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCCcceEEEEEEEEECCEEEEEEEEECCCchh
Confidence 4679999999999999999999986421110 011222222222333343 5789999999999
Q ss_pred hH-HHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 88 YI-KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 88 ~~-~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
|. ..+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+..+.. ..+...+.+..
T Consensus 82 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~ 157 (189)
T 1z06_A 82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAIQVP---TDLAQKFADTH 157 (189)
T ss_dssp HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHT
T ss_pred hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceeC---HHHHHHHHHHc
Confidence 98 666777889999999999987221 112222322222 3677 55578999996532111 11234444444
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+ ++++++||+++.+. .++.+++++|.+.++
T Consensus 158 ~-----~~~~~~Sa~~~~~~-------~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 158 S-----MPLFETSAKNPNDN-------DHVEAIFMTLAHKLK 187 (189)
T ss_dssp T-----CCEEECCSSSGGGG-------SCHHHHHHHHC----
T ss_pred C-----CEEEEEeCCcCCcc-------cCHHHHHHHHHHHHh
Confidence 4 47999999986211 478999999876553
No 109
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=5.2e-18 Score=147.64 Aligned_cols=162 Identities=17% Similarity=0.129 Sum_probs=104.6
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
+....++|+++|+.++|||||+++|++....... . ...+.+.. ....+......+.||||||+++
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------~------~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTY--------I------PTIEDTYR-QVISCDKSVCTLQITDTTGSHQ 68 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTT--------S------CCCCEEEE-EEEEETTEEEEEEEEECCGGGS
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcc--------c------Ccccccee-EEEEECCEEEEEEEEeCCChHH
Confidence 3456799999999999999999999864211000 0 00011111 1112222334688999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH-----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~-----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
|...+...+..+|++++|+|+++... .....++..+.. .++| +++++||+|+.+.+... .+...+.+.+
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~ 143 (199)
T 2gf0_A 69 FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQREVDT----REAQAVAQEW 143 (199)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSSCSSCH----HHHHHHHHHH
T ss_pred hHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCCccccCH----HHHHHHHHHh
Confidence 99888888899999999999986211 111222222222 2677 55578999997632111 1233344444
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
+ ++++++||+++ .++.++++++.+.+..
T Consensus 144 ~-----~~~~~~Sa~~~----------~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 144 K-----CAFMETSAKMN----------YNVKELFQELLTLETR 171 (199)
T ss_dssp T-----CEEEECBTTTT----------BSHHHHHHHHHHHCSS
T ss_pred C-----CeEEEEecCCC----------CCHHHHHHHHHHHHhh
Confidence 3 57999999997 5899999999887654
No 110
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.77 E-value=6.6e-18 Score=150.76 Aligned_cols=163 Identities=14% Similarity=0.108 Sum_probs=104.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh----
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH---- 85 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~---- 85 (396)
...++|+++|..|+|||||+++|++...... ...+.|.+.....+...+..+.||||||+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 90 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQ----------------SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEE----------------CC-----CEEEEEEEETTEEEEEEECTTTTTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC----------------CCCCcceeeeeeeeecCCCeEEEEECCCCcCcc
Confidence 3568999999999999999999986421100 01133444444455566788999999998
Q ss_pred --hhh---HHHHHhhhhcCCEEEEEEecCCCCC---hhHHHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHHHHHHH
Q psy15217 86 --ADY---IKNMITGAAQMDGAILVCSAADGPM---PQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIR 155 (396)
Q Consensus 86 --~~~---~~~~~~~~~~~d~~llVvda~~g~~---~qt~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i~~~~~ 155 (396)
+.. ...+......+|++++|+|+++... ....+.+..+... ++| +++|+||+|+.+..+........+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~ 169 (228)
T 2qu8_A 91 FENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS-IVIGFNKIDKCNMDSLSIDNKLLIK 169 (228)
T ss_dssp GGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC-EEEEEECGGGCC--CCCHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc-EEEEEeCcccCCchhhHHHHHHHHH
Confidence 441 1222333567899999999987533 2233445555554 777 5557899999865322222223455
Q ss_pred HHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 156 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+.+..+ ...+++++||++| .++.+++++|.+.+
T Consensus 170 ~~~~~~~---~~~~~~~~SA~~g----------~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 170 QILDNVK---NPIKFSSFSTLTG----------VGVEQAKITACELL 203 (228)
T ss_dssp HHHHHCC---SCEEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHhcC---CCceEEEEecccC----------CCHHHHHHHHHHHH
Confidence 5555443 1268999999997 58999999887654
No 111
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=7.4e-19 Score=150.91 Aligned_cols=158 Identities=20% Similarity=0.136 Sum_probs=104.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
++.++|+++|+.|+|||||+++|++...... ..|+......+..++..+.+|||||+++|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTT-------------------KPTIGFNVETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-------------------CSSTTCCEEEEEETTEEEEEEEEC----CC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCcc-------------------CCcCccceEEEEECCEEEEEEECCCCHhHH
Confidence 5689999999999999999999974321100 111112223344567889999999999988
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
..+...+..+|++++|+|+++.. .....+++..+.. .++| +++++||+|+.+... .+ ++.+.+......
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~i~~~~~~~~~~ 150 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQPGALS-AS----EVSKELNLVELK 150 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTCCC-HH----HHHHHTTTTTCC
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCCCC-HH----HHHHHhCccccc
Confidence 88888888999999999998753 2333444444332 3566 566789999976411 11 233333322232
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
....+++++||+++ .++.++++++.+.+
T Consensus 151 ~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 151 DRSWSIVASSAIKG----------EGITEGLDWLIDVI 178 (183)
T ss_dssp SSCEEEEEEBGGGT----------BTHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCC----------cCHHHHHHHHHHHH
Confidence 23468999999997 58999999987754
No 112
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.77 E-value=2.7e-18 Score=147.99 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=99.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~ 87 (396)
++.++|+++|+.|+|||||+++|++..... . ..+.+.+.....+..++ ..+.||||||+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~------------~-----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 64 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVD------------E-----YDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 64 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCC------------C-----CCTTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCC------------C-----CCCCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence 357999999999999999999998642110 0 00111122222333344 3467899999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
|...+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+.....+ +...+.+.++
T Consensus 65 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~----~~~~~~~~~~ 139 (189)
T 4dsu_A 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSRTVDTK----QAQDLARSYG 139 (189)
T ss_dssp -CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSCSSCHH----HHHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCcccccCHH----HHHHHHHHcC
Confidence 98888888889999999999987321 122222222322 2677 555689999975421111 2334444444
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||++| .++.++++++.+.+
T Consensus 140 -----~~~~~~Sa~~g----------~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 140 -----IPFIETSAKTR----------QGVDDAFYTLVREI 164 (189)
T ss_dssp -----CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred -----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 47999999997 58999999887654
No 113
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.76 E-value=1.4e-18 Score=148.87 Aligned_cols=161 Identities=20% Similarity=0.163 Sum_probs=99.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEE-ee--eeEEeeCCeeEEEEecCChh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN-TA--HIEYETKARHYAHVDCPGHA 86 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~-~~--~~~~~~~~~~~~iiDtpG~~ 86 (396)
+..++|+++|+.|+|||||+++|+...... +. ..|+. .. ...+......+.+|||||++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~----------------~~--~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT----------------DY--VPTVFDNFSANVVVNGATVNLGLWDTAGQE 67 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------------------------CBCCCC-------CEEECCCC-C
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC----------------CC--CCeeeeeEEEEEEECCEEEEEEEEECCCCh
Confidence 457999999999999999999998642100 00 00110 00 11122223456799999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCCChh-HH-HHHHHHHHc--CCCeEEEEEeccCCCCHHHHHH-------HHHHHHH
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGPMPQ-TR-EHILLARQV--GVPYIVVFLNKADMVDDEELLE-------LVEIEIR 155 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~~~q-t~-e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~-------~i~~~~~ 155 (396)
+|...+...+..+|++++|+|+++...-+ .. .++..+... ++| +++++||+|+.+.....+ ....+..
T Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 68 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp TTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHHC--CCCCCHHHHH
T ss_pred hhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhhcCcccccccccCCCCCHHHHH
Confidence 99888888888999999999998732211 11 233333332 677 555689999876432100 0112344
Q ss_pred HHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 156 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+.+.++. .+++++||+++ .++.++++++.+.+.
T Consensus 147 ~~~~~~~~----~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 147 ELKKLIGA----PAYIECSSKSQ----------ENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHHHTC----SEEEECCTTTC----------TTHHHHHHHHHHHHS
T ss_pred HHHHHcCC----CEEEEEECCCC----------CCHHHHHHHHHHHHh
Confidence 55555543 58999999997 689999999887554
No 114
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.76 E-value=1.1e-18 Score=149.22 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=103.3
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCCh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGH 85 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~ 85 (396)
+....++|+++|+.|+|||||+++|++..... .. ...+..... ..+..++ ..+.+|||||+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~------------~~----~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~ 67 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVS------------DY----DPTIEDSYT-KICSVDGIPARLDILDTAGQ 67 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCS------------SC----CTTCCEEEE-EEEEETTEEEEEEEEECCCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCcc------------cc----CCCcCceEE-EEEEECCEEEEEEEEECCCc
Confidence 44567999999999999999999998752100 00 001111111 2233343 46789999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHH-H---HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLA-R---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~-~---~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
++|...+...+..+|++++|+|+++... .....++..+ . ..++| +++++||+|+.+..+.. ..+...+...
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~ 143 (181)
T 2fn4_A 68 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLESQRQVP---RSEASAFGAS 143 (181)
T ss_dssp TTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGGGGCCSC---HHHHHHHHHH
T ss_pred hhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccC---HHHHHHHHHH
Confidence 9998777778889999999999987321 1222222222 2 23677 55568999987532110 1123333343
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+ ++++++||+++ .++.+++++|.+.+.
T Consensus 144 ~~-----~~~~~~Sa~~~----------~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 144 HH-----VAYFEASAKLR----------LNVDEAFEQLVRAVR 171 (181)
T ss_dssp TT-----CEEEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred cC-----CeEEEecCCCC----------CCHHHHHHHHHHHHH
Confidence 33 58999999997 589999998876553
No 115
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.76 E-value=1.3e-18 Score=151.16 Aligned_cols=164 Identities=16% Similarity=0.071 Sum_probs=105.5
Q ss_pred cCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCC
Q psy15217 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPG 84 (396)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG 84 (396)
...+..++|+++|+.|+|||||+++|++...... ....+..... ..+..++ ..+.+|||||
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~----------------~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G 80 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTA----------------YVPTVFENFS-HVMKYKNEEFILHLWDTAG 80 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSS----------------CCCCSEEEEE-EEEEETTEEEEEEEEEECC
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCc----------------cCCeeeeeeE-EEEEECCEEEEEEEEECCC
Confidence 3445679999999999999999999986431100 0001111111 2233333 4568999999
Q ss_pred hhhhHHHHHhhhhcCCEEEEEEecCCCCChhH--HHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 85 HADYIKNMITGAAQMDGAILVCSAADGPMPQT--REHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 85 ~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
+++|...+...+..+|++++|+|+++...-.. ..++..+... ++| +++++||+|+.+.... +...++...+.+.
T Consensus 81 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~ 158 (194)
T 3reg_A 81 QEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLRKDGSD-DVTKQEGDDLCQK 158 (194)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGCCTTTT-CCCHHHHHHHHHH
T ss_pred cHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccCCCC-cccHHHHHHHHHh
Confidence 99998888888999999999999987321111 2223333333 566 5567899999753110 0112245555665
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+++ .+++++||+++ .++.++++++.+.+.
T Consensus 159 ~~~----~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 159 LGC----VAYIEASSVAK----------IGLNEVFEKSVDCIF 187 (194)
T ss_dssp HTC----SCEEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred cCC----CEEEEeecCCC----------CCHHHHHHHHHHHHH
Confidence 554 34999999997 589999999877553
No 116
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=1.6e-18 Score=150.37 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=106.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
.+.++|+++|+.++|||||+++|++...... .....|.+.......+......+.||||||+++|.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 78 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPE--------------LAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR 78 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTT--------------CCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCcc--------------CCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh
Confidence 3578999999999999999999986421100 00111333333333343344678899999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
..+...+..+|++++|+|+++... .....++..+.. .++| +++++||+|+.+.+... .+...+.+..+
T Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~-- 151 (195)
T 1x3s_A 79 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV-NMLVGNKIDKENREVDR----NEGLKFARKHS-- 151 (195)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCE-EEEEEECTTSSSCCSCH----HHHHHHHHHTT--
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEEECCcCcccccCH----HHHHHHHHHcC--
Confidence 888888899999999999987322 122233333333 2455 55678999995431111 12344444443
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
++++++||+++ .++.+++++|.+.+.
T Consensus 152 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 152 ---MLFIEASAKTC----------DGVQCAFEELVEKII 177 (195)
T ss_dssp ---CEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred ---CEEEEecCCCC----------CCHHHHHHHHHHHHH
Confidence 57999999997 589999999887654
No 117
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.76 E-value=5.7e-18 Score=142.33 Aligned_cols=155 Identities=18% Similarity=0.158 Sum_probs=101.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADY 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~ 88 (396)
+.++|+++|+.|+|||||+++|++...... . . ..+.+.....+..+ ...+.+|||||+++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~------------~----~-~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 64 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDE------------C----D-PTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSC------------C----C-TTCCEEEEEEEEETTEEEEEEEEECCCCSSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccc------------c----C-CccceEEEEEEEECCEEEEEEEEECCCchhh
Confidence 358999999999999999999986421110 0 0 01111111222233 345789999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc----CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV----GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~----~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
...+...+..+|++++|+|+++... ....+.+..+... ++| +++++||+|+.+.... ..+..++.+..+
T Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~- 138 (166)
T 2ce2_X 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAARTVE----SRQAQDLARSYG- 138 (166)
T ss_dssp CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCSC----HHHHHHHHHHHT-
T ss_pred hHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhcccC----HHHHHHHHHHcC-
Confidence 8888888889999999999986321 1223333333332 677 5556899998763211 123344444444
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .++.++++++.+.+
T Consensus 139 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 139 ----IPYIETSAKTR----------QGVEDAFYTLVREI 163 (166)
T ss_dssp ----CCEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred ----CeEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 47999999997 58999999987654
No 118
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.76 E-value=7.6e-18 Score=148.95 Aligned_cols=155 Identities=23% Similarity=0.231 Sum_probs=102.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeee--eEEeeC----------CeeE
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAH--IEYETK----------ARHY 77 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~--~~~~~~----------~~~~ 77 (396)
...++|+++|+.++|||||+++|++.... .+....++.+... ..+... ...+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFN----------------PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCC----------------CEEEEEEEEEEEEEEEEEEC-------CCEEEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCC----------------cCCCCceeEEEEEEEEEECCccccccccCceeEEE
Confidence 45689999999999999999999854210 0001112222222 222222 4578
Q ss_pred EEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHH----HHH----cCCCeEEEEEeccCCCCHHHHHHH
Q psy15217 78 AHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILL----ARQ----VGVPYIVVFLNKADMVDDEELLEL 149 (396)
Q Consensus 78 ~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~----~~~----~~ip~iIvviNK~D~~~~~~~~~~ 149 (396)
.||||||+++|...+...+..+|++++|+|+++. .+.+.+.. +.. .++| +++++||+|+.+.....
T Consensus 87 ~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~---~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~v~-- 160 (217)
T 2f7s_A 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQ---QSFLNVRNWMSQLQANAYCENPD-IVLIGNKADLPDQREVN-- 160 (217)
T ss_dssp EEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCH---HHHHHHHHHHHTCCCCCTTTCCE-EEEEEECTTCGGGCCSC--
T ss_pred EEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCH---HHHHHHHHHHHHHHHhcCcCCCC-EEEEEECCccccccccC--
Confidence 9999999999999999999999999999999873 33332221 211 2455 56678999997531110
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 150 VEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 150 i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
..++..+.+..+ ++++++||+++ .++.+++++|.+.+
T Consensus 161 -~~~~~~~~~~~~-----~~~~~~Sa~~g----------~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 161 -ERQARELADKYG-----IPYFETSAATG----------QNVEKAVETLLDLI 197 (217)
T ss_dssp -HHHHHHHHHHTT-----CCEEEEBTTTT----------BTHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHCC-----CcEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 123445555544 47999999997 58889888887654
No 119
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.76 E-value=1e-18 Score=149.86 Aligned_cols=158 Identities=18% Similarity=0.155 Sum_probs=100.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~ 87 (396)
.+.++|+++|+.|+|||||+++|+...... .. ....+.+. ...+..++ ..+.+|||||+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~------------~~--~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVD------------SY--DPTIENTF---TKLITVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCS------------CC--CTTCCEEE---EEEEEETTEEEEEEEEECCCCCT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCC------------CC--CCCccccE---EEEEEECCEEEEEEEEeCCCchh
Confidence 357899999999999999999998542100 00 00112222 22233344 4678999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHH----HHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLA----RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~----~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
|...+...+..+|++++|+|+++... ......+..+ ...++| +++++||+|+.+.... ...+...+.+.++
T Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 142 (181)
T 3t5g_A 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMERVI---SYEEGKALAESWN 142 (181)
T ss_dssp TCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTCCS---CHHHHHHHHHHTT
T ss_pred hhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhccee---cHHHHHHHHHHhC
Confidence 97667777889999999999987211 1111122122 223677 5556899998653211 1123445555554
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+++++||+++ .++.++++++.+.+.
T Consensus 143 -----~~~~~~Sa~~~----------~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 143 -----AAFLESSAKEN----------QTAVDVFRRIILEAE 168 (181)
T ss_dssp -----CEEEECCTTSH----------HHHHHHHHHHHHHHH
T ss_pred -----CcEEEEecCCC----------CCHHHHHHHHHHHHH
Confidence 47999999997 589999999877654
No 120
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.76 E-value=1.7e-18 Score=146.47 Aligned_cols=153 Identities=20% Similarity=0.250 Sum_probs=99.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH--
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI-- 89 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~-- 89 (396)
.++|+++|++|+|||||+++|++..... +...++|++.....+..++..+.+|||||+++|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 66 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYI----------------GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN 66 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSC----------------C-----CCCCCEEEEEETTEEEEEEECCCCSCSSSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeec----------------cCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCc
Confidence 5899999999999999999998642100 0112444444444455567889999999988763
Q ss_pred ----HHHHhhh--hcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 90 ----KNMITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 90 ----~~~~~~~--~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
......+ ..+|++++|+|+.+ .......+..+...++| ++++.||+|+...... ..+...+.+.++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~- 138 (165)
T 2wji_A 67 SIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGAN-LLLALNKMDLAKSLGI----EIDVDKLEKILG- 138 (165)
T ss_dssp SHHHHHHHHHHHHHCCSEEEEEEETTC--HHHHHHHHHHHHHTTCC-EEEEEECHHHHHHTTC----CCCHHHHHHHHT-
T ss_pred chhHHHHHHHHhcCCCCEEEEEecCCc--hhHhHHHHHHHHhcCCC-EEEEEEchHhccccCh----hhHHHHHHHHhC-
Confidence 1122233 37999999999986 22333344455556888 4556899998532110 001223333333
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||++| .+++++++++.+.+
T Consensus 139 ----~~~~~~SA~~~----------~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 139 ----VKVVPLSAAKK----------MGIEELKKAISIAV 163 (165)
T ss_dssp ----SCEEECBGGGT----------BSHHHHHHHHHHHT
T ss_pred ----CCEEEEEcCCC----------CCHHHHHHHHHHHh
Confidence 47999999997 58999999987754
No 121
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.76 E-value=1.2e-18 Score=158.46 Aligned_cols=156 Identities=18% Similarity=0.192 Sum_probs=109.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
++.++|+++|++|+|||||+++|++..... ....|+|++.....+...+..+.||||||+..|.
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~----------------~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYV----------------ANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEE----------------EECTTSCCEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcc----------------cCCCCceEEEEEEEEEECCeEEEEEECCCcCccC
Confidence 346899999999999999999998643211 0123778877777777778899999999987664
Q ss_pred H------HHHhhh--hcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 90 K------NMITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 90 ~------~~~~~~--~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
. .....+ ..+|++++|+|+++. ......+..+...++|. ++++||+|+...... ..+...+.+.+
T Consensus 67 ~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pv-ilv~NK~Dl~~~~~i----~~~~~~l~~~l 139 (258)
T 3a1s_A 67 YSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKV-ILAMTAIDEAKKTGM----KIDRYELQKHL 139 (258)
T ss_dssp SSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCE-EEEEECHHHHHHTTC----CBCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCE-EEEEECcCCCCccch----HHHHHHHHHHc
Confidence 2 112222 479999999999873 23334445566678994 556899998543111 11233344444
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+ +|++++||++| .|+.+|++++.+...
T Consensus 140 g-----~~vi~~SA~~g----------~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 140 G-----IPVVFTSSVTG----------EGLEELKEKIVEYAQ 166 (258)
T ss_dssp C-----SCEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred C-----CCEEEEEeeCC----------cCHHHHHHHHHHHhh
Confidence 4 58999999997 589999999887543
No 122
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=1.8e-18 Score=152.31 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=103.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~ 87 (396)
...++|+++|+.++|||||+++|++..... +...+++.+.....+..++ ..+.||||||+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP----------------SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC----------------SSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc----------------ccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 457899999999999999999998642110 1111233333333444444 5789999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
|...+...+..+|++++|+|+++... ....+++..+... ++| +++++||+|+....... .+...+.+.++
T Consensus 82 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~~- 155 (213)
T 3cph_A 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVTA----DQGEALAKELG- 155 (213)
T ss_dssp GTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEECTTCSSCCSCH----HHHHHHHHHHT-
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccCH----HHHHHHHHHcC-
Confidence 98777888889999999999987321 2223344444333 566 55678999995421111 12334444444
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .++.+++++|.+.+
T Consensus 156 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 156 ----IPFIESSAKND----------DNVNEIFFTLAKLI 180 (213)
T ss_dssp ----CCEEECBTTTT----------BSSHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 47999999997 57888888876654
No 123
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.76 E-value=2.5e-18 Score=151.48 Aligned_cols=167 Identities=19% Similarity=0.130 Sum_probs=106.1
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
..+.++|+++|+.|+|||||+++|+......... . ..+.... ....+......+.||||||+++|
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~---------~-----t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~ 70 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI---------P-----TVFDNFS-ANVAVDGQIVNLGLWDTAGQEDY 70 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC---------C-----SSCCCEE-EEEECSSCEEEEEEECCCCCCCC
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCC---------C-----ccceeEE-EEEEECCEEEEEEEEECCCcHHH
Confidence 3567999999999999999999998642110000 0 0011111 11122223357889999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHH-HHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHH-----HHHHHHHHHh
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTR-EHILLARQV--GVPYIVVFLNKADMVDDEELLEL-----VEIEIRELLN 159 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~-e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~-----i~~~~~~~l~ 159 (396)
...+...+..+|++++|+|+++... .... .++..+... ++| +++++||+|+.+....... ...+...+.+
T Consensus 71 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~ 149 (212)
T 2j0v_A 71 SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK 149 (212)
T ss_dssp CC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhhhCccccccccCCCCHHHHHHHHH
Confidence 8888888899999999999987321 1111 233344433 777 5556899998764221000 1223455555
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
.++. .+++++||+++ .++.++++++.+.+..+
T Consensus 150 ~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 150 QIGA----AAYIECSSKTQ----------QNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHTC----SEEEECCTTTC----------TTHHHHHHHHHHHHHCC
T ss_pred HcCC----ceEEEccCCCC----------CCHHHHHHHHHHHHhhh
Confidence 5553 58999999997 58999999988765443
No 124
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=152.76 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=102.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEE-eeeeEEeeCCeeEEEEecCChhhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN-TAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~-~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
.+.++|+++|..|+|||||+++|++....... ....... .....+......+.||||||+++|
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 85 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY----------------DPTVENTYSKIVTLGKDEFHLHLVDTAGQDEY 85 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC----------------CCCSEEEEEEEEC----CEEEEEEEECCCCTT
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC----------------CCccceEEEEEEEECCEEEEEEEEECCCccch
Confidence 46899999999999999999999864211100 0011111 222233344567899999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
...+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+..... ..+...+.+.++
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~- 160 (201)
T 3oes_A 86 SILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPEREVQ---AVEGKKLAESWG- 160 (201)
T ss_dssp CCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT-
T ss_pred HHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCccccccC---HHHHHHHHHHhC-
Confidence 8888888889999999999987321 112222222222 2677 55568999987542111 112334444443
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+++++||+++ .++.+++++|.+.+.
T Consensus 161 ----~~~~~~Sa~~~----------~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 161 ----ATFMESSAREN----------QLTQGIFTKVIQEIA 186 (201)
T ss_dssp ----CEEEECCTTCH----------HHHHHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 58999999998 589999998877654
No 125
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=9.9e-18 Score=164.13 Aligned_cols=154 Identities=20% Similarity=0.201 Sum_probs=109.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh-----
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD----- 87 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~----- 87 (396)
.+|+++|.+|+|||||+++|++..... .+...|+|.+..+..++..+..+.+|||||.+.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~---------------v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~ 66 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI---------------VEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDI 66 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEETTEEEEEEECTTTTSSGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce---------------ecCCCCCccceeeEEEEECCeEEEEEECCCccccccch
Confidence 379999999999999999998643211 112347888877777888889999999999653
Q ss_pred ----hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHH-HHHHhhcC
Q psy15217 88 ----YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEI-RELLNKYE 162 (396)
Q Consensus 88 ----~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~-~~~l~~~~ 162 (396)
+...+..++..+|++++|+|+..+......+....++..++|.+ +|+||+|+.+. . + .+. .++. .++
T Consensus 67 ~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~i-lv~NK~D~~~~--~-~---~~~~~~~~-~lg 138 (439)
T 1mky_A 67 ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTI-LVANKAENLRE--F-E---REVKPELY-SLG 138 (439)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEE-EEEESCCSHHH--H-H---HHTHHHHG-GGS
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEeCCCCccc--c-H---HHHHHHHH-hcC
Confidence 45566677889999999999999888777666666777788955 56799998532 1 1 122 3333 344
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+ .+++++||++| .|+.+|++++...++
T Consensus 139 ~----~~~~~iSA~~g----------~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 139 F----GEPIPVSAEHN----------INLDTMLETIIKKLE 165 (439)
T ss_dssp S----CSCEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred C----CCEEEEeccCC----------CCHHHHHHHHHHhcc
Confidence 4 25799999998 589999999987665
No 126
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.76 E-value=3.1e-18 Score=150.21 Aligned_cols=158 Identities=15% Similarity=0.108 Sum_probs=104.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~ 87 (396)
...++|+++|+.|+|||||+++|++..... +...+++.+.....+..++ ..+.||||||+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN----------------DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT----------------TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCcccceeEEEEEEECCEEEEEEEEeCCChHH
Confidence 457999999999999999999998642111 0011222222223333343 4788999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
|...+...+..+|++++|+|+++... .....++..+... ++| +++++||+|+.+..... ..+...+.+..+
T Consensus 70 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 144 (206)
T 2bcg_Y 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL-KLLVGNKCDLKDKRVVE---YDVAKEFADANK- 144 (206)
T ss_dssp TTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSC---HHHHHHHHHHTT-
T ss_pred HHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccC---HHHHHHHHHHcC-
Confidence 98888888899999999999987322 2222233333332 456 55678999997642110 112334444443
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||++| .++.++++++.+.+
T Consensus 145 ----~~~~~~Sa~~g----------~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 145 ----MPFLETSALDS----------TNVEDAFLTMARQI 169 (206)
T ss_dssp ----CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999997 58889888886654
No 127
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.75 E-value=1.1e-18 Score=150.87 Aligned_cols=159 Identities=18% Similarity=0.144 Sum_probs=106.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
++.++|+++|+.++|||||+++|+...... + ..|+......++.++..+.+|||||+++|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-------~------------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-------T------------VPTVGVNLETLQYKNISFEVWDLGGQTGVR 80 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-------E------------CSSTTCCEEEEEETTEEEEEEEECCSSSSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-------c------------CCCCceEEEEEEECCEEEEEEECCCCHhHH
Confidence 568999999999999999999996431100 0 011112223345567889999999999987
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
..+...+..+|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+.... + ++.+.+......
T Consensus 81 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~----~~~~~~~~~~~~ 154 (189)
T 2x77_A 81 PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQDLPDAASE-A----EIAEQLGVSSIM 154 (189)
T ss_dssp CCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTCCCH-H----HHHHHTTGGGCC
T ss_pred HHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCCCCH-H----HHHHHhChhhcc
Confidence 77777788999999999998753 2333344433332 2566 5667899999764211 1 122222211122
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
...++++++||+++ .++.++++++.+.++
T Consensus 155 ~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 155 NRTWTIVKSSSKTG----------DGLVEGMDWLVERLR 183 (189)
T ss_dssp SSCEEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCc----------cCHHHHHHHHHHHHH
Confidence 23468999999997 689999999887654
No 128
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.75 E-value=1.7e-18 Score=158.86 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=108.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
+.++|+++|++|+|||||+++|++.....+ ...|+|++.....++..+..+.+|||||+.+|..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVG----------------NWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEE----------------ECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccC----------------CCCCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence 468999999999999999999986532111 1236777777777888888999999999877643
Q ss_pred ------HHHhhh--hcCCEEEEEEecCCCCChhHHHHHHHHHHcC-CCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 91 ------NMITGA--AQMDGAILVCSAADGPMPQTREHILLARQVG-VPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 91 ------~~~~~~--~~~d~~llVvda~~g~~~qt~e~l~~~~~~~-ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
.....+ ..+|++++|+|++.+ .+....+..+...+ +| +++++||+|+.+..... .+...+.+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~----~~~~~l~~~l 138 (271)
T 3k53_A 66 HSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKN-IILVLNKFDLLKKKGAK----IDIKKMRKEL 138 (271)
T ss_dssp SCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCS-EEEEEECHHHHHHHTCC----CCHHHHHHHH
T ss_pred CCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCC-EEEEEEChhcCcccccH----HHHHHHHHHc
Confidence 122222 579999999999874 34444555556667 88 55578999986432110 0122333333
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+ +|++++||+++ .|+.++++.+...+.
T Consensus 139 g-----~~~~~~Sa~~g----------~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 139 G-----VPVIPTNAKKG----------EGVEELKRMIALMAE 165 (271)
T ss_dssp S-----SCEEECBGGGT----------BTHHHHHHHHHHHHH
T ss_pred C-----CcEEEEEeCCC----------CCHHHHHHHHHHHHh
Confidence 3 57999999997 588999998877543
No 129
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.75 E-value=5.5e-18 Score=149.76 Aligned_cols=162 Identities=17% Similarity=0.143 Sum_probs=104.1
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCCh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGH 85 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~ 85 (396)
.+.+.+||+++|..++|||||+.+++...- ..+....+..+.....+..++ ..+.||||+|+
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f----------------~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGq 72 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSF----------------DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGL 72 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCC----------------C----------CEEEEEECSSCEEEEEEECCSCT
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCC----------------CCCcCCccceEEEEEEEEecceEEEEEEEECCCc
Confidence 344578999999999999999999985321 111112222233333333333 45679999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCC-CChhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADG-PMPQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g-~~~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
++|...+...++.+|++++|+|.+.. .+.....++..+.. -++| +++|.||+|+.+.... ..++..++.+.+
T Consensus 73 e~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~~r~V---~~~e~~~~a~~~ 148 (216)
T 4dkx_A 73 ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLADKRQV---SIEEGERKAKEL 148 (216)
T ss_dssp TTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGGGCCS---CHHHHHHHHHHH
T ss_pred hhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeeccchHhcCcc---cHHHHhhHHHHh
Confidence 99998888889999999999999872 12222333333332 3566 5567799998653111 112345555655
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
+ ++++++||++| .+++++++.|.+.++.
T Consensus 149 ~-----~~~~e~SAktg----------~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 149 N-----VMFIETSAKAG----------YNVKQLFRRVAAALPG 176 (216)
T ss_dssp T-----CEEEEEBTTTT----------BSHHHHHHHHHHHC--
T ss_pred C-----CeeEEEeCCCC----------cCHHHHHHHHHHHHHh
Confidence 5 57999999998 5899999999887653
No 130
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.75 E-value=4.8e-17 Score=151.69 Aligned_cols=163 Identities=17% Similarity=0.193 Sum_probs=109.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee-CCeeEEEEecCChhhhH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KARHYAHVDCPGHADYI 89 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~ 89 (396)
..++|+++|.+|+|||||+++|++.... ......+.|++..+..+.. ++..+.+|||||+++|.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~---------------~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 66 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSA---------------FDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFM 66 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCT---------------GGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC---------------ccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHh
Confidence 4689999999999999999999864211 1112346666655555553 46789999999999994
Q ss_pred H-----HHHhhhhcCCEEEEEEecCCCCChhHHHH----HHHHHHc--CCCeEEEEEeccCCCCHHHH---HHHHHHHHH
Q psy15217 90 K-----NMITGAAQMDGAILVCSAADGPMPQTREH----ILLARQV--GVPYIVVFLNKADMVDDEEL---LELVEIEIR 155 (396)
Q Consensus 90 ~-----~~~~~~~~~d~~llVvda~~g~~~qt~e~----l~~~~~~--~ip~iIvviNK~D~~~~~~~---~~~i~~~~~ 155 (396)
. .....+..+|++++|+|+++...-+..+. +..+... ++| +++++||+|+.+.+.+ .+....++.
T Consensus 67 ~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~~~~~r~~~~~v~~~~~~ 145 (307)
T 3r7w_A 67 ENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLVQLDKREELFQIMMKNLS 145 (307)
T ss_dssp HHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEecccccchhhhhHHHHHHHHHHH
Confidence 4 33444568999999999998543232222 2222221 677 5567899999984322 224445677
Q ss_pred HHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 156 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++.+.++++ .++++++||++. ++.+++..+...+
T Consensus 146 ~~~~~~g~~--~~~~~~tSa~~~-----------~i~e~~~~iv~~l 179 (307)
T 3r7w_A 146 ETSSEFGFP--NLIGFPTSIWDE-----------SLYKAWSQIVCSL 179 (307)
T ss_dssp HHHHTTTCC--SCEEEECCTTSS-----------HHHHHHHHHHHTT
T ss_pred HHHHHcCCC--CeEEEEeeecCC-----------hHHHHHHHHHHHH
Confidence 888877752 478999999983 6667666665543
No 131
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.75 E-value=5.7e-18 Score=143.32 Aligned_cols=156 Identities=19% Similarity=0.135 Sum_probs=92.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhhhH
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYI 89 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~ 89 (396)
.++|+++|+.|+|||||+++|++....... ....+.+.....+..+ ...+.+|||||+++|.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 65 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH----------------EMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG 65 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEETTEEEEEEEECCCCC----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc----------------cCCCcCCeeeEEEEECCeEEEEEEEECCCccccc
Confidence 579999999999999999999753211100 0111222222223333 3567799999999987
Q ss_pred H-HHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHHc----CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 90 K-NMITGAAQMDGAILVCSAADGP-MPQTREHILLARQV----GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 90 ~-~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~~----~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
. .....+..+|++++|+|+++.. .....+.+..+... ++| +++++||+|+.+.... ...+...+.+..+
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 140 (169)
T 3q85_A 66 GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREV---SLEEGRHLAGTLS- 140 (169)
T ss_dssp ----CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT-
T ss_pred hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcchhhcccC---CHHHHHHHHHHcC-
Confidence 6 3444467899999999998721 11222333333332 677 5556899998743111 1123444555443
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++++||+++ .++.++++++.+.+
T Consensus 141 ----~~~~~~Sa~~~----------~~v~~l~~~l~~~i 165 (169)
T 3q85_A 141 ----CKHIETSAALH----------HNTRELFEGAVRQI 165 (169)
T ss_dssp ----CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ----CcEEEecCccC----------CCHHHHHHHHHHHH
Confidence 58999999997 58999999887644
No 132
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.75 E-value=2.8e-18 Score=167.93 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=106.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChh------
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA------ 86 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~------ 86 (396)
.+|+++|++|+|||||+++|++.... ..+...|+|.+..+..++..+..+.+|||||++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~---------------~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~ 68 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS---------------IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPF 68 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC--------------------------CEEEECTTCSSCCEEEC---------CH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce---------------eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhH
Confidence 68999999999999999999854211 112234888888777777888899999999985
Q ss_pred --hhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 87 --DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 87 --~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
.+...+..++..+|++++|+|+.++......+....+...++|. ++++||+|+.+... +..++. .+++
T Consensus 69 ~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pv-ilv~NK~D~~~~~~-------~~~~~~-~lg~- 138 (436)
T 2hjg_A 69 LAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPV-VLAVNKLDNTEMRA-------NIYDFY-SLGF- 138 (436)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCE-EEEEECCCC------------CCCSSG-GGSS-
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECccCccchh-------hHHHHH-HcCC-
Confidence 66777777888999999999999998888877777777778884 55689999875411 111222 2333
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
.+++++||.+| .|+.+|++++.+.++.
T Consensus 139 ---~~~~~iSA~~g----------~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 139 ---GEPYPISGTHG----------LGLGDLLDAVAEHFKN 165 (436)
T ss_dssp ---CCCEECBTTTT----------BTHHHHHHHHHHTGGG
T ss_pred ---CCeEEEeCcCC----------CChHHHHHHHHHhcCc
Confidence 26899999998 5899999999887763
No 133
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.75 E-value=1.4e-18 Score=153.88 Aligned_cols=163 Identities=18% Similarity=0.129 Sum_probs=100.5
Q ss_pred ccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC-C--eeEEEEec
Q psy15217 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-A--RHYAHVDC 82 (396)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~--~~~~iiDt 82 (396)
+......++|+++|..|+|||||+++|++..... ..............+... + ..+.+|||
T Consensus 5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt 68 (218)
T 4djt_A 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEK----------------NYNATVGAVNHPVTFLDDQGNVIKFNVWDT 68 (218)
T ss_dssp -----CEEEEEEECCTTSSHHHHHCBCTTCSTTC----------------EEETTTTEEEEEEEEEBTTSCEEEEEEEEE
T ss_pred cccccCccEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCccceeeEEEEEEeCCCcEEEEEEEec
Confidence 3445678999999999999999999997532110 000111112222222222 2 56899999
Q ss_pred CChhhhHHHHHhhhhcCCEEEEEEecCCCCChhH-HHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy15217 83 PGHADYIKNMITGAAQMDGAILVCSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (396)
Q Consensus 83 pG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt-~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l 158 (396)
||+++|.......+..+|++++|+|++++...+. .+++..+.. .++| +++|+||+|+.+..+. ...+...+.
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~ 144 (218)
T 4djt_A 69 AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAP-IVVCANKIDIKNRQKI---SKKLVMEVL 144 (218)
T ss_dssp CSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSC-EEEEEECTTCC----C---CHHHHHHHT
T ss_pred CCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccc---CHHHHHHHH
Confidence 9999988777777889999999999997432222 222233333 2677 5556899999764221 112334444
Q ss_pred hhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 159 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+.. ..+++++||++| .++.++++++.+.+.
T Consensus 145 ~~~-----~~~~~~~Sa~~g----------~gv~~l~~~l~~~~~ 174 (218)
T 4djt_A 145 KGK-----NYEYFEISAKTA----------HNFGLPFLHLARIFT 174 (218)
T ss_dssp TTC-----CCEEEEEBTTTT----------BTTTHHHHHHHHHHH
T ss_pred HHc-----CCcEEEEecCCC----------CCHHHHHHHHHHHHh
Confidence 433 368999999997 578888888876553
No 134
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.75 E-value=1.2e-18 Score=154.78 Aligned_cols=164 Identities=16% Similarity=0.057 Sum_probs=108.9
Q ss_pred cccCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC
Q psy15217 5 KFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG 84 (396)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG 84 (396)
........++|+++|+.|+|||||+++|+....... .....|.+.......+......+.||||||
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 73 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKK--------------YVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCE--------------EETTTTEEEEEEEEEETTEEEEEEEEEECS
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceeEEEEEEEECCEEEEEEEEeCCC
Confidence 334556789999999999999999999654321110 011225555555555555556789999999
Q ss_pred hhhhHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 85 HADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 85 ~~~~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
+++|...+...+..+|++++|+|+++... .....++..+... ++| +++++||+|+.+.... .+...+.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-----~~~~~~~~~~ 147 (221)
T 3gj0_A 74 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKVK-----AKSIVFHRKK 147 (221)
T ss_dssp GGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSSSCSSC-----GGGCCHHHHH
T ss_pred hHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCcccccccc-----HHHHHHHHHc
Confidence 99998777778889999999999997322 1122233333332 677 5557899999764211 0122223333
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+ ++++++||+++ .++.+++++|.+.+.
T Consensus 148 ~-----~~~~~~Sa~~~----------~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 148 N-----LQYYDISAKSN----------YNFEKPFLWLARKLI 174 (221)
T ss_dssp T-----CEEEECBGGGT----------BTTTHHHHHHHHHHH
T ss_pred C-----CEEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 2 57999999997 578888888877553
No 135
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.75 E-value=1.9e-18 Score=151.43 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=79.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC----CeeEEEEecCCh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK----ARHYAHVDCPGH 85 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~----~~~~~iiDtpG~ 85 (396)
+..++|+++|+.|+|||||+++|++..... ..+....+..+.....+..+ ...+.||||||+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 83 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKF--------------LKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS 83 (208)
T ss_dssp EEEEEEEEC------------------------------------------------CEEEECTTSSEEEEEEEEETTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcc--------------cCCCCCccceEEEEEEEEECCcccEEEEEEEECCCc
Confidence 456899999999999999999998641100 00011111122333334444 457899999999
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH------cCCCeEEEEEeccCCCC-HHHHHHHHHHHHHHH
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ------VGVPYIVVFLNKADMVD-DEELLELVEIEIREL 157 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~------~~ip~iIvviNK~D~~~-~~~~~~~i~~~~~~~ 157 (396)
++|...+...+..+|++++|+|+++... .....++..+.. .++| +++++||+|+.+ .... ..+++..+
T Consensus 84 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~v---~~~~~~~~ 159 (208)
T 2yc2_C 84 DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR-AVLVANKTDLPPQRHQV---RLDMAQDW 159 (208)
T ss_dssp HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE-EEEEEECC-------CC---CHHHHHHH
T ss_pred HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc-EEEEEECcccchhhccC---CHHHHHHH
Confidence 9999988888999999999999987432 233344444443 3566 566789999976 2111 11244555
Q ss_pred HhhcCCCCCCCeEEEecccc-cccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 158 LNKYEFPGNDIPIIKGSAKL-ALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 158 l~~~~~~~~~~~~i~~Sa~~-g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+.++ ++++++||++ + .++.++++++.+.+
T Consensus 160 ~~~~~-----~~~~~~Sa~~~~----------~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 160 ATTNT-----LDFFDVSANPPG----------KDADAPFLSIATTF 190 (208)
T ss_dssp HHHTT-----CEEEECCC-----------------CHHHHHHHHHH
T ss_pred HHHcC-----CEEEEeccCCCC----------cCHHHHHHHHHHHH
Confidence 55554 5899999999 8 47778888776643
No 136
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.74 E-value=1.3e-17 Score=144.08 Aligned_cols=156 Identities=18% Similarity=0.135 Sum_probs=93.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~ 87 (396)
.+.++|+++|+.|+|||||+++|++..... .. . +.+.......+..++ ..+.||||||+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~------------~~----~-~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVD------------EY----D-PTIEDSYRKQVVIDGETCLLDILDTAGQEE 81 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCS------------CC----C-TTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCcc------------cc----C-CccceEEEEEEEECCEEEEEEEEECCChHH
Confidence 457899999999999999999998642110 00 0 111111112233333 4588999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
|...+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+.... .+++.++.+..+
T Consensus 82 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~ 156 (190)
T 3con_A 82 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDLPTRTVD----TKQAHELAKSYG 156 (190)
T ss_dssp --------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCSC----HHHHHHHHHHHT
T ss_pred HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCCcccCC----HHHHHHHHHHcC
Confidence 98888888999999999999987322 122223333332 2677 5557899998763111 123444455444
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++++||+++ .++.+++++|.+.+
T Consensus 157 -----~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 181 (190)
T 3con_A 157 -----IPFIETSAKTR----------QGVEDAFYTLVREI 181 (190)
T ss_dssp -----CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred -----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 47999999997 58999999887654
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.74 E-value=2.5e-17 Score=161.22 Aligned_cols=163 Identities=25% Similarity=0.239 Sum_probs=108.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
...++|+++|++|+|||||+++|++...... ....|+|.+.....+..++..+.+|||||..++.
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v---------------~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~ 242 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALV---------------SPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKS 242 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEE---------------CCCC------CCEEEEETTEEEEESSCSCC----
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCccccc---------------CCCCCCcCCceEEEEEECCEEEEEEECCCCcccc
Confidence 3468999999999999999999987532111 1122667766666677788899999999986543
Q ss_pred HH------------HHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHH-HHHHHHHHHHH
Q psy15217 90 KN------------MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEE-LLELVEIEIRE 156 (396)
Q Consensus 90 ~~------------~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~-~~~~i~~~~~~ 156 (396)
.. ....+..+|++++|+|+.++...+.......+...+.| +++++||+|+.+.+. ..+.+..++..
T Consensus 243 ~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~ 321 (439)
T 1mky_A 243 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA-SVVVFNKWDLVVHREKRYDEFTKLFRE 321 (439)
T ss_dssp -------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSTTGGGCHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCCCchhhHHHHHHHHHHH
Confidence 22 23456689999999999998877776666667777888 455689999986422 12333334444
Q ss_pred HHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 157 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+.... ..|++++||++| .++.+|++.+.+.+
T Consensus 322 ~~~~~~----~~~~~~~SA~~g----------~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 322 KLYFID----YSPLIFTSADKG----------WNIDRMIDAMNLAY 353 (439)
T ss_dssp HCGGGT----TSCEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred HhccCC----CCcEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 443333 368999999998 57888888776543
No 138
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.74 E-value=9.8e-18 Score=164.67 Aligned_cols=156 Identities=14% Similarity=0.086 Sum_probs=93.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
..++|+++|++|+|||||+++|++.... ......|+|.+.....+..++..+.||||||+.++..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a---------------~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~ 296 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERA---------------IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGE 296 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEETTEEEEEEC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc---------------ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchh
Confidence 4578999999999999999999864211 1112336777777777778889999999999877643
Q ss_pred H--------HHhhhhcCCEEEEEEecCCCCChh-HHHHHHHHHHc-CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 91 N--------MITGAAQMDGAILVCSAADGPMPQ-TREHILLARQV-GVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 91 ~--------~~~~~~~~d~~llVvda~~g~~~q-t~e~l~~~~~~-~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
. +...+..+|++++|+|++++...+ ..+....+..+ ++| +++|+||+|+.+.... +. +++.+.
T Consensus 297 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~p-iIvV~NK~Dl~~~~~~-~~--~~l~~~--- 369 (476)
T 3gee_A 297 EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAK-FLTVANKLDRAANADA-LI--RAIADG--- 369 (476)
T ss_dssp -----------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSE-EEEEEECTTSCTTTHH-HH--HHHHHH---
T ss_pred HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCC-EEEEEECcCCCCccch-hH--HHHHhc---
Confidence 2 344567899999999999876542 22223333333 556 6667899999876332 11 122221
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
++ .+++++||++| .|+++|++++.+.++
T Consensus 370 -~~----~~~i~vSAktg----------~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 370 -TG----TEVIGISALNG----------DGIDTLKQHMGDLVK 397 (476)
T ss_dssp -HT----SCEEECBTTTT----------BSHHHHHHHHTHHHH
T ss_pred -CC----CceEEEEECCC----------CCHHHHHHHHHHHHh
Confidence 22 57999999997 689999999988765
No 139
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.74 E-value=1.9e-17 Score=142.52 Aligned_cols=162 Identities=14% Similarity=0.064 Sum_probs=101.9
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEe-eeeEEeeCCeeEEEEecCChhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT-AHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
.+..++|+++|+.|+|||||+++|++...... ....+.... ....+......+.+|||||+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 67 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPEN----------------YVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSS----------------CCCCSEEEEEEEEECSSCEEEEEEEEECCSGG
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCC----------------CCCccceeEEEEEEECCEEEEEEEEECCCChh
Confidence 35679999999999999999999986421100 000111111 1122223345688999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCChh-H-HHHHHHHHH--cCCCeEEEEEeccCCCCHHHHHHHH---------HHHH
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPMPQ-T-REHILLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EIEI 154 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~~q-t-~e~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~i---------~~~~ 154 (396)
|...+...+..+|++++|+|+++...-+ . ...+..+.. .++| ++++.||+|+.+.....+.+ .++.
T Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 146 (184)
T 1m7b_A 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQG 146 (184)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred hhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhhcchhhHhhhhhcccCCCCHHHH
Confidence 9877777888999999999998722111 1 122223333 2566 56678999997532111110 1234
Q ss_pred HHHHhhcCCCCCCCeEEEeccc-ccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 155 RELLNKYEFPGNDIPIIKGSAK-LALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 155 ~~~l~~~~~~~~~~~~i~~Sa~-~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
..+.+.++. .+++++||+ ++ .++.++++.+.+.
T Consensus 147 ~~~~~~~~~----~~~~e~Sa~~~~----------~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 147 ANMAKQIGA----ATYIECSALQSE----------NSVRDIFHVATLA 180 (184)
T ss_dssp HHHHHHHTC----SEEEECBTTTBH----------HHHHHHHHHHHHH
T ss_pred HHHHHHcCC----cEEEEeeecCCC----------cCHHHHHHHHHHH
Confidence 555555543 689999998 55 4899999988764
No 140
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.74 E-value=1.2e-17 Score=147.54 Aligned_cols=164 Identities=15% Similarity=0.082 Sum_probs=105.0
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEe-eeeEEeeCCeeEEEEecCChhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT-AHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
....++|+++|..++|||||+++|++...... ....+.... ....+......+.||||||+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 87 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPET----------------YVPTVFENYTACLETEEQRVELSLWDTSGSPY 87 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSS----------------CCCCSEEEEEEEEEC--CEEEEEEEEECCSGG
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCC----------------cCCeeeeeEEEEEEECCEEEEEEEEECCCCHh
Confidence 34679999999999999999999986421100 000111111 1122333445788999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCCh-h-HHHHHHHHHHc--CCCeEEEEEeccCCCCHHHHHH---------HHHHHH
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPMP-Q-TREHILLARQV--GVPYIVVFLNKADMVDDEELLE---------LVEIEI 154 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~~-q-t~e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~---------~i~~~~ 154 (396)
|...+...+..+|++++|+|+++...- . ...++..+... ++| ++++.||+|+.+...... ....+.
T Consensus 88 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 166 (214)
T 3q3j_B 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQG 166 (214)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccchhhhhhhcccccCccCHHHH
Confidence 988888888999999999999873321 1 23333444443 667 555689999975311000 112234
Q ss_pred HHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCc-HHHHHHHhhhhCC
Q psy15217 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQS-ILSLSKALDTYIP 203 (396)
Q Consensus 155 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~-~~~Ll~~l~~~l~ 203 (396)
..+.+.+++ .+++++||+++ .+ +.++++++.+.+.
T Consensus 167 ~~~~~~~~~----~~~~e~SA~~g----------~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 167 CAIAKQLGA----EIYLEGSAFTS----------EKSIHSIFRTASMLCL 202 (214)
T ss_dssp HHHHHHHTC----SEEEECCTTTC----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC----CEEEEeccCCC----------cccHHHHHHHHHHHHh
Confidence 555565553 38999999997 56 9999999877553
No 141
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.73 E-value=1.3e-17 Score=151.83 Aligned_cols=165 Identities=12% Similarity=0.138 Sum_probs=108.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh-
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY- 88 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~- 88 (396)
.+.++|+++|++|+|||||+++|++....... ....++|.+.....+...+..+.||||||+.++
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESK--------------LGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCC--------------TTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccC--------------CCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 45789999999999999999999864211100 001124544444556667889999999998654
Q ss_pred ----------HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHc-----CCCeEEEEEe-ccCCCCHHHHHHHHH-
Q psy15217 89 ----------IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQV-----GVPYIVVFLN-KADMVDDEELLELVE- 151 (396)
Q Consensus 89 ----------~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~-----~ip~iIvviN-K~D~~~~~~~~~~i~- 151 (396)
.+.+...+..+|++++|+|+.. ...+....+..+... +.|.++| +| |+|+.+. ...+.+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~v-v~nK~Dl~~~-~~~~~i~~ 162 (260)
T 2xtp_A 86 DHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVL-FTHKEDLNGG-SLMDYMHD 162 (260)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEE-EECGGGGTTC-CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEE-EEcccccCCc-cHHHHHHh
Confidence 3333446678999999999985 666666666666554 5675665 56 9999853 2222111
Q ss_pred ---HHHHHHHhhcCCCCCCCeE--EEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 152 ---IEIRELLNKYEFPGNDIPI--IKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 152 ---~~~~~~l~~~~~~~~~~~~--i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.++..+++.++.. ..++ +++||+++ .++.+|++.+...++
T Consensus 163 ~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~~----------~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 163 SDNKALSKLVAACGGR--ICAFNNRAEGSNQD----------DQVKELMDCIEDLLM 207 (260)
T ss_dssp CCCHHHHHHHHHTTTC--EEECCTTCCHHHHH----------HHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhCCe--EEEecCcccccccH----------HHHHHHHHHHHHHHH
Confidence 2344455555421 0012 78999987 589999999887664
No 142
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.73 E-value=3.4e-17 Score=142.89 Aligned_cols=162 Identities=17% Similarity=0.098 Sum_probs=101.8
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCe--eEEEEecCChh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHA 86 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~ 86 (396)
..+.++|+++|+.|+|||||+++|++..... +.. ..+.+.....+..++. .+.+|||||++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~----------------~~~-~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPT----------------EYI-PTAFDNFSAVVSVDGRPVRLQLCDTAGQD 79 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC-------------------------CCSSEEEEEEEEETTEEEEEEEEECCCST
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCC-CcccceeEEEEEECCEEEEEEEEECCCCH
Confidence 4568999999999999999999998642110 000 1111111223344443 56799999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCCChhH-H-HHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHH---------HHHH
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGPMPQT-R-EHILLARQV--GVPYIVVFLNKADMVDDEELLEL---------VEIE 153 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~~~qt-~-e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~---------i~~~ 153 (396)
+|...+...+..+|++++|+|+++...-+. . .++..+... ++| +++++||+|+.+.....+. ...+
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 158 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP-IILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSC-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhchhhhhhhcccccccCCHHH
Confidence 998777777889999999999987322111 1 233333332 777 5556899999753221111 1123
Q ss_pred HHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 154 IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 154 ~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
...+.+.++. .+++++||+++ .++.++++++.+.+
T Consensus 159 ~~~~~~~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 159 AKLLAEEIKA----ASYIECSALTQ----------KNLKEVFDAAIVAG 193 (201)
T ss_dssp HHHHHHHHTC----SEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHhcCC----cEEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 4455555443 58999999997 58999999887654
No 143
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.73 E-value=5.8e-18 Score=146.04 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=107.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH-
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI- 89 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~- 89 (396)
+.++|+++|+.|+|||||+++|++.... .+...++|.+.....+..++..+.+|||||+++|.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 69 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVY----------------IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTA 69 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEE----------------EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc----------------ccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccc
Confidence 5689999999999999999999864210 01122566666556666778899999999988773
Q ss_pred -----HHHHhhh--hcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 90 -----KNMITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 90 -----~~~~~~~--~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
......+ ..+|++++|+|+.. .......+..+...++|. +++.||+|+...... ..+...+.+.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~----~~~~~~~~~~~~ 142 (188)
T 2wjg_A 70 NSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANL-LLALNKMDLAKSLGI----EIDVDKLEKILG 142 (188)
T ss_dssp SSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCE-EEEEECHHHHHHTTC----CCCHHHHHHHHT
T ss_pred ccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCE-EEEEEhhhccccccc----hHHHHHHHHHhC
Confidence 1222223 35999999999975 334445555566678884 556899998543111 012333334433
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
.+++++||+++ .++.++++++.+.+...
T Consensus 143 -----~~~~~~Sa~~~----------~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 143 -----VKVVPLSAAKK----------MGIEELKKAISIAVKDK 170 (188)
T ss_dssp -----SCEEECBGGGT----------BSHHHHHHHHHHHHTTC
T ss_pred -----CCeEEEEecCC----------CCHHHHHHHHHHHHHhc
Confidence 47999999997 58999999998876543
No 144
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.73 E-value=5.3e-18 Score=159.63 Aligned_cols=159 Identities=18% Similarity=0.140 Sum_probs=103.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
++.++|+++|+.|+|||||+++|++.... . ...|+......++..+..+.||||||+++|.
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~------------~-------~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 223 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIV------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 223 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCE------------E-------EEEETTEEEEEEEETTEEEEEEECC-----C
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCC------------C-------cccccceEEEEEecCcEEEEEEECCCCHhHH
Confidence 35679999999999999999999643100 0 0113333444566678899999999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHH-HHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLA-RQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~-~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
..+...+..+|++|+|+|+++.. +....+.+..+ ... ++| +++|+||+|+.+.... + ++...+......
T Consensus 224 ~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~-~----~i~~~~~~~~~~ 297 (329)
T 3o47_A 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSLR 297 (329)
T ss_dssp CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-H----HHHHHHTCTTCC
T ss_pred HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe-EEEEEECccCCcccCH-H----HHHHHhchhhhh
Confidence 88888889999999999997632 22333333222 222 666 5667899999864221 1 222222222222
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
...++++++||++| .++++|+++|.+.+.
T Consensus 298 ~~~~~~~~vSAk~g----------~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 298 HRNWYIQATCATSG----------DGLYEGLDWLSNQLR 326 (329)
T ss_dssp SSCEEEEECBTTTT----------BTHHHHHHHHHHHHT
T ss_pred cCCCEEEEEECCCC----------cCHHHHHHHHHHHHH
Confidence 34578999999997 589999999987654
No 145
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.73 E-value=1.3e-17 Score=142.05 Aligned_cols=153 Identities=18% Similarity=0.182 Sum_probs=100.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh--
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY-- 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-- 88 (396)
+..+|+++|.+|+|||||+++|++..... . ....++|.+.....+..++..+.+|||||++++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~----------~-----~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 67 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAI----------V-----TDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD 67 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSC----------C-----CSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcce----------e-----eCCCCceeceeeEEEEECCeEEEEEECCCcccchh
Confidence 45899999999999999999998642110 0 001244444444455566778999999997542
Q ss_pred ------HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q psy15217 89 ------IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (396)
Q Consensus 89 ------~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~ 159 (396)
.......+..+|++++|+|+++....+..+.+..+... ++| +++++||+|+.+... .+.+
T Consensus 68 ~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~----------~~~~ 136 (172)
T 2gj8_A 68 EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP-ITVVRNKADITGETL----------GMSE 136 (172)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCC-EEEEEECHHHHCCCC----------EEEE
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCC-EEEEEECccCCcchh----------hhhh
Confidence 11233456789999999999875543334444434332 577 555689999854210 0111
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
. ...+++++||+++ .++.++++++.+.+..
T Consensus 137 ~-----~~~~~~~~SA~~g----------~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 137 V-----NGHALIRLSARTG----------EGVDVLRNHLKQSMGF 166 (172)
T ss_dssp E-----TTEEEEECCTTTC----------TTHHHHHHHHHHHC--
T ss_pred c-----cCCceEEEeCCCC----------CCHHHHHHHHHHHhhh
Confidence 1 2368999999997 6899999999887653
No 146
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=144.03 Aligned_cols=160 Identities=19% Similarity=0.137 Sum_probs=99.6
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHA 86 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~ 86 (396)
....++|+++|..|+|||||+++|++..... .. ..+++.+.....+..++ ..+.+|||||++
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--------------~~--~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDS--------------AH--EPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCG--------------GG--TTTSCTTEEEEEEEETTEEEEEEEECCCCCS
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCc--------------cC--CCCcccceEEEEEEECCEEEEEEEEecCCCc
Confidence 3467999999999999999999986431110 00 01122112222233333 456789999998
Q ss_pred hhHH-HHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 87 DYIK-NMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 87 ~~~~-~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
+|.. .....+..+|++++|+|+++.. +....+.+..+.. .++| ++++.||+|+.+.... ..++...+.+.
T Consensus 84 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~~~~a~~ 159 (195)
T 3cbq_A 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREV---SLEEGRHLAGT 159 (195)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCTTTCCS---CHHHHHHHHHH
T ss_pred cchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeechhccccCCc---CHHHHHHHHHH
Confidence 8755 3444567899999999998621 1222333333333 2677 5556899999753111 01123344444
Q ss_pred cCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+ ++++++||+++ .++.++++++.+.+.
T Consensus 160 ~~-----~~~~e~Sa~~~----------~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 160 LS-----CKHIETSAALH----------HNTRELFEGAVRQIR 187 (195)
T ss_dssp TT-----CEEEEEBTTTT----------BSHHHHHHHHHHHHH
T ss_pred hC-----CEEEEEcCCCC----------CCHHHHHHHHHHHHH
Confidence 43 57999999997 589999999887664
No 147
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.73 E-value=2.3e-17 Score=142.21 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=99.3
Q ss_pred cCCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCC
Q psy15217 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPG 84 (396)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG 84 (396)
..+.+.++|+++|..|+|||||+++|+...... .. ..|.......+..++ ..+.||||||
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~------------~~------~~t~~~~~~~~~~~~~~~~l~i~Dt~G 76 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQ------------EE------SPEGGRFKKEIVVDGQSYLLLIRDEGG 76 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCC------------CC------CTTCEEEEEEEEETTEEEEEEEEECSS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCC------------Cc------CCCcceEEEEEEECCEEEEEEEEECCC
Confidence 345678999999999999999999998642110 00 011111112333444 4567899999
Q ss_pred hhhhHHHHHhhhhcCCEEEEEEecCCCCChhH-HHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q psy15217 85 HADYIKNMITGAAQMDGAILVCSAADGPMPQT-REHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (396)
Q Consensus 85 ~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~ 159 (396)
+++|. .+..+|++++|+|+++...-+. ...+..+.. .++| ++++.||+|+...... ....++...+.+
T Consensus 77 ~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~-~v~~~~~~~~~~ 149 (184)
T 3ihw_A 77 PPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISAANPR-VIDDSRARKLST 149 (184)
T ss_dssp SCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBTTBCC-CSCHHHHHHHHH
T ss_pred Chhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccc-ccCHHHHHHHHH
Confidence 99886 5667999999999987322122 333333333 3567 5556799998521100 001123455555
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.++. .+++++||+++ .++.++++++.+.+
T Consensus 150 ~~~~----~~~~e~Sa~~~----------~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 150 DLKR----CTYYETCATYG----------LNVERVFQDVAQKV 178 (184)
T ss_dssp HTTT----CEEEEEBTTTT----------BTHHHHHHHHHHHH
T ss_pred HcCC----CeEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 5542 68999999997 58999999887643
No 148
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.72 E-value=5.1e-18 Score=155.23 Aligned_cols=153 Identities=18% Similarity=0.220 Sum_probs=102.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH--
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI-- 89 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~-- 89 (396)
.++|+++|++|+|||||+++|++.... ... ..|+|.+.....+.. +..+.+|||||+.+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-----------v~~-----~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~ 65 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-----------VGN-----WPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPY 65 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-----------CCS-----SSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-----------ccC-----CCCCcEEEEEEEEec-CCeEEEEECCCcCccCCC
Confidence 579999999999999999999864211 011 126666555455554 6789999999988764
Q ss_pred ----HHHHhhhh--cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 90 ----KNMITGAA--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 90 ----~~~~~~~~--~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
......+. .+|++++|+|+++. .........+...++| +++++||+|+...... ..+...+.+.++
T Consensus 66 ~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~~~----~~~~~~l~~~lg- 137 (272)
T 3b1v_A 66 SPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIP-VTIALNMIDVLDGQGK----KINVDKLSYHLG- 137 (272)
T ss_dssp SHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSC-EEEEEECHHHHHHTTC----CCCHHHHHHHHT-
T ss_pred ChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCC-EEEEEEChhhCCcCCc----HHHHHHHHHHcC-
Confidence 22222333 69999999999862 2233334445567899 4556899998543111 012233333333
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+|++++||++| .|+.+|++++.+.+.
T Consensus 138 ----~~vi~~SA~~g----------~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 138 ----VPVVATSALKQ----------TGVDQVVKKAAHTTT 163 (272)
T ss_dssp ----SCEEECBTTTT----------BSHHHHHHHHHHSCT
T ss_pred ----CCEEEEEccCC----------CCHHHHHHHHHHHHh
Confidence 57999999997 689999999988654
No 149
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.72 E-value=6e-17 Score=148.69 Aligned_cols=167 Identities=16% Similarity=0.202 Sum_probs=95.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChh--
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHA-- 86 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~-- 86 (396)
..++|+++|++|+|||||+++|++......... ........+++++.....+..++ ..+++|||||+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYP--------GPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCC--------CcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 478999999999999999999975321110000 00001123444444444444444 378999999972
Q ss_pred -------------------hhHHHHHhh------hhcCCEEEEEEecCC-CCChhHHHHHHHHHHcCCCeEEEEEeccCC
Q psy15217 87 -------------------DYIKNMITG------AAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADM 140 (396)
Q Consensus 87 -------------------~~~~~~~~~------~~~~d~~llVvda~~-g~~~qt~e~l~~~~~~~ip~iIvviNK~D~ 140 (396)
.|+...... -..+|++++++++.. +......+.+..+.. ++| +|+|+||+|+
T Consensus 79 ~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~p-vi~V~nK~D~ 156 (274)
T 3t5d_A 79 VDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKADT 156 (274)
T ss_dssp SCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSC-EEEEESSGGG
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCC-EEEEEeccCC
Confidence 222221111 013678999986654 788888888777776 788 5556899999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 141 VDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 141 ~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.+..+. +..+..+.+.+...+ ++++++||.++ +++.+++++|.+.+|
T Consensus 157 ~~~~e~-~~~~~~i~~~l~~~~-----i~v~~~sa~~~----------~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 157 LTPEEC-QQFKKQIMKEIQEHK-----IKIYEFPETDD----------EEENKLVKKIKDRLP 203 (274)
T ss_dssp SCHHHH-HHHHHHHHHHHHHTT-----CCCCCC---------------------CHHHHHTCS
T ss_pred CCHHHH-HHHHHHHHHHHHHcC-----CeEEcCCCCCC----------hhHHHHHHHHhcCCC
Confidence 876443 334445666665544 46888899886 578889999888654
No 150
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.72 E-value=2.6e-17 Score=161.88 Aligned_cols=155 Identities=17% Similarity=0.152 Sum_probs=110.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC------
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG------ 84 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG------ 84 (396)
...+|+++|.+|+|||||+++|++..... .+...|+|.+......+..+..+.+|||||
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~---------------v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~ 86 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISI---------------VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE 86 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC--------------------------CEEEECTTCSSCCEEECCCC------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcc---------------cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcch
Confidence 35699999999999999999997642111 112347888887777777888999999999
Q ss_pred --hhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 85 --HADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 85 --~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
++.+...+..++..+|++|+|+|+.++......+.+..+...+.|.+ +++||+|+.+... ...++. .++
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvi-lV~NK~D~~~~~~-------~~~e~~-~lg 157 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVV-LAVNKLDNTEMRA-------NIYDFY-SLG 157 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEE-EEEECC----------------CCSG-GGS
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEE-EEEECccchhhhh-------hHHHHH-HcC
Confidence 88888888888999999999999999999998888888888898954 5679999875311 112222 233
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
+ -+.+++||.+| .++.+|++++...++
T Consensus 158 ~----~~~~~iSA~~g----------~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 158 F----GEPYPISGTHG----------LGLGDLLDAVAEHFK 184 (456)
T ss_dssp S----SSEEECCTTTC----------TTHHHHHHHHHTTGG
T ss_pred C----CceEEeecccc----------cchHHHHHHHHhhcc
Confidence 3 24679999997 589999999987665
No 151
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.71 E-value=6e-17 Score=139.47 Aligned_cols=167 Identities=15% Similarity=0.165 Sum_probs=100.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEe-----eCCeeEEEEecCChh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE-----TKARHYAHVDCPGHA 86 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-----~~~~~~~iiDtpG~~ 86 (396)
.++|+++|..|+|||||+++|++..... ..+....+..+.....+. .....+.+|||||++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~--------------~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSD--------------LGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-------------------------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCcc--------------CCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 4799999999999999999998631100 000111222333222222 134578899999999
Q ss_pred hhHHHHHhhhhcCCEEEEEEecCCCC--ChhHHHHHHHHHH--cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 87 DYIKNMITGAAQMDGAILVCSAADGP--MPQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 87 ~~~~~~~~~~~~~d~~llVvda~~g~--~~qt~e~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
+|.......+..+|++++|+|.+++. +.....++..+.. .++| ++++.||+|+.+.....+........+.+.++
T Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T 2zej_A 68 EFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTHLDVSDEKQRKACMSKITKELLNKRG 146 (184)
T ss_dssp HHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCE-EEEEEECGGGCCHHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCc-EEEEEECCCcccchhhHHHHHHHHHHHHHhcC
Confidence 98876666777899999999998752 2223333333333 2566 55567999998753322222222344444444
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
++ ...+++++||+++. +++.+|++.+.+.++
T Consensus 147 ~~-~~~~~~~~Sa~~~~---------~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 147 FP-AIRDYHFVNATEES---------DALAKLRKTIINESL 177 (184)
T ss_dssp SC-EEEEEEECCTTSCC---------HHHHHHHHHHHHHHH
T ss_pred Cc-chhheEEEecccCc---------hhHHHHHHHHHHHHh
Confidence 31 11249999999971 278899998877654
No 152
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=6.8e-17 Score=140.52 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=99.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEe-eeeEEeeCCeeEEEEecCChhhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT-AHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
++.++|+++|+.|+|||||+++|++...... ....+.... ....+......+.||||||+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~- 88 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWE----------------YDPTLESTYRHQATIDDEVVSMEILDTAGQED- 88 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSC----------------CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcc----------------cCCCCCceEEEEEEECCEEEEEEEEECCCCCc-
Confidence 4679999999999999999999986421100 000111111 1122222345688999999988
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
...+...+..+|++++|+|+++.. .....+++..+.. .++| +++++||+|+.+.... ...+...+.+..+
T Consensus 89 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v---~~~~~~~~~~~~~- 163 (196)
T 2atv_A 89 TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQV---STEEGEKLATELA- 163 (196)
T ss_dssp CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCCS---CHHHHHHHHHHHT-
T ss_pred ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECccccccccc---CHHHHHHHHHHhC-
Confidence 555666778899999999998721 1222223333322 3677 5556899999753111 0112334444433
Q ss_pred CCCCCeEEEecccccccCCCCCCCCC-cHHHHHHHhhhhC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQ-SILSLSKALDTYI 202 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~-~~~~Ll~~l~~~l 202 (396)
++++++||+++ . ++.+++++|.+.+
T Consensus 164 ----~~~~~~Sa~~g----------~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 164 ----CAFYECSACTG----------EGNITEIFYELCREV 189 (196)
T ss_dssp ----SEEEECCTTTC----------TTCHHHHHHHHHHHH
T ss_pred ----CeEEEECCCcC----------CcCHHHHHHHHHHHH
Confidence 58999999997 6 8999999887654
No 153
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.71 E-value=7.1e-17 Score=141.67 Aligned_cols=161 Identities=14% Similarity=0.074 Sum_probs=101.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEe-eeeEEeeCCeeEEEEecCChhhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT-AHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
+..++|+++|..|+|||||+++|++..... +....+.... ....+......+.||||||+++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 89 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE----------------NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS----------------SCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC----------------CcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh
Confidence 467999999999999999999998642110 0000111111 11122233457889999999999
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhH-HHHHHHHHH--cCCCeEEEEEeccCCCCHHHHHHHH---------HHHHH
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQT-REHILLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EIEIR 155 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt-~e~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~i---------~~~~~ 155 (396)
.......+..+|++++|+|+++... ... ..++..+.. .++| ++++.||+|+.+.....+.+ .++..
T Consensus 90 ~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 168 (205)
T 1gwn_A 90 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA 168 (205)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhhccchhhhhhhcccccCCCCHHHHH
Confidence 8777777889999999999987221 111 122233333 2566 56678999997532111110 12345
Q ss_pred HHHhhcCCCCCCCeEEEeccc-ccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 156 ELLNKYEFPGNDIPIIKGSAK-LALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 156 ~~l~~~~~~~~~~~~i~~Sa~-~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
.+.+.++. .+++++||+ ++ .++.++++.+.+.
T Consensus 169 ~~~~~~~~----~~~~e~SAk~~~----------~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 169 NMAKQIGA----ATYIECSALQSE----------NSVRDIFHVATLA 201 (205)
T ss_dssp HHHHHHTC----SEEEECCTTTCH----------HHHHHHHHHHHHH
T ss_pred HHHHHcCC----CEEEEeeeccCC----------cCHHHHHHHHHHH
Confidence 55555543 589999998 55 4799999888653
No 154
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.71 E-value=1e-16 Score=144.85 Aligned_cols=168 Identities=15% Similarity=0.087 Sum_probs=108.2
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh---
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH--- 85 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~--- 85 (396)
..+.++|+++|++|+|||||+++|++........ ...++|.......+..++..+.||||||.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~--------------~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRL--------------GATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEETTEEEEEEECCSCSST
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccC--------------CCCCccccEEEEEEEECCcEEEEEECCCCCCC
Confidence 3568999999999999999999998653211100 11245555555566778899999999996
Q ss_pred -----hhhHHHHHhhh----hcCCEEEEEEecCCCCChhHHHHHHHHHHc------CCCeEEEEEeccCCCCHHHHHHHH
Q psy15217 86 -----ADYIKNMITGA----AQMDGAILVCSAADGPMPQTREHILLARQV------GVPYIVVFLNKADMVDDEELLELV 150 (396)
Q Consensus 86 -----~~~~~~~~~~~----~~~d~~llVvda~~g~~~qt~e~l~~~~~~------~ip~iIvviNK~D~~~~~~~~~~i 150 (396)
+++...+...+ ..+|++|+|+|++. ....+...+..+... +.| +|++.||+|+.+. ...+.+
T Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~-iilv~nK~Dl~~~-~~~~~l 160 (247)
T 3lxw_A 84 QVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWM-VIVFTRKEDLAGG-SLHDYV 160 (247)
T ss_dssp THHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGE-EEEEECGGGGTTC-CHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccE-EEEEEchHhcCCC-CHHHHH
Confidence 55655555554 78999999999985 556666656555553 566 5667899999763 111222
Q ss_pred H----HHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 151 E----IEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 151 ~----~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
. ..+..+++.++. ++++.++...... .+.++.+|++.+...++
T Consensus 161 ~~~~~~~l~~l~~~~g~-----~~~~~~~~~~~~~-----~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 161 SNTENRALRELVAECGG-----RVCAFDNRATGRE-----QEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp HHCCCHHHHHHHHHTTT-----CEEECCTTCCHHH-----HHHHHHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHcCC-----eEEEEeCCCCccc-----cHHHHHHHHHHHHHHHH
Confidence 1 346777777764 3555554431000 01478899999888765
No 155
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.70 E-value=7.9e-17 Score=138.94 Aligned_cols=154 Identities=25% Similarity=0.338 Sum_probs=99.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC--------
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG-------- 84 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG-------- 84 (396)
++|+++|+.|+|||||+++|++..... +...|+|.+.....+ . .+.+|||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~ 61 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRR----------------GKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLP 61 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSS----------------SSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCcc----------------CCCCCccceeEEEec--C--CEEEEECCCccccccCC
Confidence 689999999999999999998642110 011133333332222 2 689999999
Q ss_pred ---hhhhHHHHHhhh----hcCCEEEEEEecCCC-----------CChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHH
Q psy15217 85 ---HADYIKNMITGA----AQMDGAILVCSAADG-----------PMPQTREHILLARQVGVPYIVVFLNKADMVDDEEL 146 (396)
Q Consensus 85 ---~~~~~~~~~~~~----~~~d~~llVvda~~g-----------~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~ 146 (396)
++.|...+...+ ..+++++.|+|+... ...++.+.+..+...++| +++++||+|+.+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-- 138 (190)
T 2cxx_A 62 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-TIVAVNKLDKIKNV-- 138 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-EEEEEECGGGCSCH--
T ss_pred HHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc-eEEEeehHhccCcH--
Confidence 677766554443 446788888887541 122334445555667888 45568999998753
Q ss_pred HHHHHHHHHHHHhhcCCCC--CCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 147 LELVEIEIRELLNKYEFPG--NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 147 ~~~i~~~~~~~l~~~~~~~--~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
..+...+.+.++.+. ...+++++||++| .++.++++++.+.+.
T Consensus 139 ----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~----------~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 139 ----QEVINFLAEKFEVPLSEIDKVFIPISAKFG----------DNIERLKNRIFEVIR 183 (190)
T ss_dssp ----HHHHHHHHHHHTCCGGGHHHHEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhhhhhhccCCcEEEEecCCC----------CCHHHHHHHHHHhcc
Confidence 113344444444421 1246899999997 589999999887654
No 156
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.70 E-value=5e-17 Score=140.40 Aligned_cols=160 Identities=14% Similarity=0.081 Sum_probs=96.3
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
.+...++|+++|..|+|||||+++|++..... ... ...+.+. .....+......+.||||||+++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~------------~~~--~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFIS------------EYD--PNLEDTY-SSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCS------------CCC--TTCCEEE-EEEEEETTEEEEEEEEECCC---
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCc------------ccC--CCcccee-eEEEEECCEEEEEEEEECCCCCc
Confidence 44567999999999999999999998642110 000 0001111 11122222335678999999988
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH------cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~------~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~ 160 (396)
|.. +...+..+|++++|+|+++.. +.....++..+.. .++| ++++.||+|+.+.... ..++..++.+.
T Consensus 82 ~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~~~~~~~ 156 (187)
T 3c5c_A 82 PRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQYRQV---TKAEGVALAGR 156 (187)
T ss_dssp CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGCSS---CHHHHHHHHHH
T ss_pred chh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhcCcc---CHHHHHHHHHH
Confidence 754 245677899999999998622 1222333333333 3777 5557899998643111 01234445555
Q ss_pred cCCCCCCCeEEEecc-cccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 161 YEFPGNDIPIIKGSA-KLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 161 ~~~~~~~~~~i~~Sa-~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++ ++++++|| +++ .++.++++.+.+.+
T Consensus 157 ~~-----~~~~e~Sa~~~g----------~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 157 FG-----CLFFEVSACLDF----------EHVQHVFHEAVREA 184 (187)
T ss_dssp HT-----CEEEECCSSSCS----------HHHHHHHHHHHHHH
T ss_pred cC-----CcEEEEeecCcc----------ccHHHHHHHHHHHH
Confidence 44 47999999 786 58999999887643
No 157
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.70 E-value=4.1e-19 Score=155.10 Aligned_cols=159 Identities=17% Similarity=0.144 Sum_probs=97.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~ 87 (396)
...++|+++|+.++|||||+++|++.. ...+...+++.+.....+..++ ..+.||||||+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 94 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT----------------YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC----------------CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC----------------CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 457999999999999999999986421 1111122233223333333444 5688999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHHc---CCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
|...+...+..+|++++|+|+++... ....+.+..+... ++| +++++||+|+.+..... ..+...+.+.++
T Consensus 95 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~v~---~~~~~~~~~~~~- 169 (199)
T 3l0i_B 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVD---YTTAKEFADSLG- 169 (199)
T ss_dssp CCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC--CCCC---SCC-CHHHHTTT-
T ss_pred HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCC-EEEEEECccCCccccCC---HHHHHHHHHHcC-
Confidence 98777778889999999999987432 2223333334333 566 55568999997542110 012333444443
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
++++++||+++ .++.+++++|.+.+.
T Consensus 170 ----~~~~~vSA~~g----------~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 170 ----IPFLETSAKNA----------TNVEQSFMTMAAEIK 195 (199)
T ss_dssp ----CCBCCCCC-------------HHHHHHHHHHTTTTT
T ss_pred ----CeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 57999999997 589999999987654
No 158
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.70 E-value=1.2e-16 Score=136.51 Aligned_cols=153 Identities=12% Similarity=0.151 Sum_probs=93.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
.+.++|+++|..++|||||+++|++....... ...+... .....+......+.+|||||++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~---------------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~- 67 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLE---------------KTESEQY-KKEMLVDGQTHLVLIREEAGAPDA- 67 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCS---------------SCSSSEE-EEEEEETTEEEEEEEEECSSSCCH-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcC---------------CCcceeE-EEEEEECCEEEEEEEEECCCCchh-
Confidence 46799999999999999999999874221100 0011111 111222222345789999999873
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCChhHHHHHH----HHHH------cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPMPQTREHIL----LARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~----~~~~------~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~ 159 (396)
..+..+|++++|+|+++. .+.+.+. .+.. .++| ++++.||+|+.+.... ....++..++.+
T Consensus 68 ----~~~~~~d~~ilv~D~~~~---~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~v~~~~~~~~~~ 138 (178)
T 2iwr_A 68 ----KFSGWADAVIFVFSLEDE---NSFQAVSRLHGQLSSLRGEGRGGLA-LALVGTQDRISASSPR-VVGDARARALXA 138 (178)
T ss_dssp ----HHHHHCSEEEEEEETTCH---HHHHHHHHHHHHHHHHHCSSSCCCE-EEEEEECTTCBTTBCC-CSCHHHHHHHHH
T ss_pred ----HHHHhCCEEEEEEECcCH---HHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccC-cCCHHHHHHHHH
Confidence 345679999999999873 2322222 2222 2566 5567899998421000 000112334444
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
..+ ..+++++||++| .++.++++++.+.+
T Consensus 139 ~~~----~~~~~~~Sa~~~----------~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 139 DMK----RCSYYETXATYG----------LNVDRVFQEVAQKV 167 (178)
T ss_dssp HHS----SEEEEEEBTTTT----------BTHHHHHHHHHHHH
T ss_pred hhc----CCeEEEEecccc----------CCHHHHHHHHHHHH
Confidence 332 368999999997 58999999887643
No 159
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.69 E-value=9.4e-17 Score=157.80 Aligned_cols=152 Identities=19% Similarity=0.196 Sum_probs=108.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChh-hhH-
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA-DYI- 89 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~-~~~- 89 (396)
.++|+++|.+|+|||||+++|++....... ...|+|.+.....+..++..+.||||||+. ++.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs---------------~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~ 307 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVT---------------DIPGTTRDVISEEIVIRGILFRIVDTAGVRSETND 307 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCC---------------CSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCT
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccC---------------CCCCeeeeeEEEEEecCCeEEEEEECCCccccchh
Confidence 489999999999999999999975311110 122566666666677788899999999987 542
Q ss_pred -------HHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 90 -------KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 90 -------~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
..+...+..+|++|+|+|++++...+..+.+..+ .+.| +++++||+|+.+... .+ ++.+++.
T Consensus 308 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~p-iivV~NK~DL~~~~~-~~----~~~~~~~--- 376 (482)
T 1xzp_A 308 LVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKR-YLVVINKVDVVEKIN-EE----EIKNKLG--- 376 (482)
T ss_dssp TCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSS-EEEEEEECSSCCCCC-HH----HHHHHHT---
T ss_pred hHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCC-EEEEEECcccccccC-HH----HHHHHhc---
Confidence 4456677899999999999887665555554443 3667 555789999975311 11 2333322
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
...+++++||+++ .|+++|+++|.+.+
T Consensus 377 ---~~~~~i~iSAktg----------~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 377 ---TDRHMVKISALKG----------EGLEKLEESIYRET 403 (482)
T ss_dssp ---CSTTEEEEEGGGT----------CCHHHHHHHHHHHT
T ss_pred ---CCCcEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 2367999999997 58999999987754
No 160
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.69 E-value=1.6e-16 Score=158.27 Aligned_cols=160 Identities=18% Similarity=0.123 Sum_probs=110.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
+..++|+++|.+++|||||+++|++.... . ...|++.....++..+..+.||||||+++|.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~------------~-------~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 380 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV------------T-------TIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 380 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC------------C-------CCCCSSEEEEEEESSSCEEEEEEECCCGGGS
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC------------C-------cCCccceeEEEEEeCCEEEEEEECCCcHHHH
Confidence 45799999999999999999999864310 0 0123334444566678899999999999998
Q ss_pred HHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 90 ~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
..+...+..+|++|+|+|+++... ....+.+..+.. .++| +|+++||+|+.+.... + ++...+......
T Consensus 381 ~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~-~----~~~~~~~~~~~~ 454 (497)
T 3lvq_E 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKP-H----EIQEKLGLTRIR 454 (497)
T ss_dssp GGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSSCCCH-H----HHHHHTTCTTCC
T ss_pred HHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCcCCCH-H----HHHHHhchhhhh
Confidence 888888999999999999987432 222223322222 3677 5557899999764211 1 222222221122
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
....+++++||++| .|+++++++|.+.+..
T Consensus 455 ~~~~~~~~~SA~~g----------~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 455 DRNWYVQPSCATSG----------DGLYEGLTWLTSNYKS 484 (497)
T ss_dssp SSCEEEEECBTTTT----------BTHHHHHHHHHHHCC-
T ss_pred cCCeEEEEEECCCC----------CCHHHHHHHHHHHHHh
Confidence 24568999999998 6999999999887653
No 161
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.68 E-value=3.2e-16 Score=147.56 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=106.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCee--EEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARH--YAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~--~~iiDtpG~~~ 87 (396)
+..++|+++|..|+|||||+++|+...... . ..+.+.+.....+..++.. +.||||||+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~------------~-----~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPG------------E-----YIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCC------------S-----CCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCc------------c-----cCCcccceeEEEEEECCEEEEEEEEeCCCchh
Confidence 456899999999999999999998642110 0 1122222223334444444 45999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCChhHH--HHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHHH---------HHHH
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EIEI 154 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~i---------~~~~ 154 (396)
|...+...+..+|++++|+|+++...-+.. .++..+... ++| +++++||+|+.+.....+.+ ..+.
T Consensus 216 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred hhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCc-EEEEEEchhcccccchhhhccccccccccHHHH
Confidence 988888888899999999999873221111 223334433 777 55568999986542221111 1234
Q ss_pred HHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 155 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
..+.+..+. .+++++||++| .++.++++.+.+.+.
T Consensus 295 ~~~~~~~~~----~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 295 LAMAKEIGA----VKYLECSALTQ----------RGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred HHHHHHcCC----cEEEEecCCCC----------cCHHHHHHHHHHHHh
Confidence 455555543 48999999997 589999999877543
No 162
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.50 E-value=2.7e-18 Score=150.38 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=100.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeee--eEEeeCCeeEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAH--IEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~--~~~~~~~~~~~iiDtpG~~~ 87 (396)
+..++|+++|..|+|||||+++|++...... ....+.+... ..+......+.+|||||+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------YIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 5679999999999999999999975421100 0011111111 12222334566999999999
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCCC-hhHH-HHHHHHHHc--CCCeEEEEEeccCCCCHHHHHHH---------HHHHH
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTR-EHILLARQV--GVPYIVVFLNKADMVDDEELLEL---------VEIEI 154 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~~-~qt~-e~l~~~~~~--~ip~iIvviNK~D~~~~~~~~~~---------i~~~~ 154 (396)
|...+...+..+|++++|+|+++... .... ..+..+... ++| +++++||+|+.+.....+. ...+.
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 169 (204)
T 3th5_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 169 (204)
Confidence 99888888899999999999987432 2222 333333333 677 4556899999764221111 11123
Q ss_pred HHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 155 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
..+.+..+. .+++++||++| .|++++++++.+
T Consensus 170 ~~~~~~~~~----~~~~~vSA~~g----------~gi~~l~~~l~~ 201 (204)
T 3th5_A 170 LAMAKEIGA----VKYLECSALTQ----------RGLKTVFDEAIR 201 (204)
Confidence 333333332 37999999997 588888888765
No 163
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.67 E-value=1.6e-16 Score=155.56 Aligned_cols=155 Identities=22% Similarity=0.224 Sum_probs=101.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 90 (396)
..++|+++|++|+|||||+++|++....... + ..|+|.+.....+..++..+.||||||+.++..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~---------~------~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~ 287 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVT---------D------LPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD 287 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCS---------C------CTTCCHHHHHHEEEETTEEEEECC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccccc---------C------CCCeeEEEEEEEEEECCEEEEEEECCccccchh
Confidence 4578999999999999999999875321110 0 124555554445666788999999999876532
Q ss_pred --------HHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 91 --------NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 91 --------~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
.+...+..+|++++|+|++++...+..+.+..+. ..| +++++||+|+.+.... + .++.+.
T Consensus 288 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~p-iivV~NK~Dl~~~~~~-~--------~~~~~~ 355 (462)
T 3geh_A 288 QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRP-LILVMNKIDLVEKQLI-T--------SLEYPE 355 (462)
T ss_dssp -----------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSC-EEEEEECTTSSCGGGS-T--------TCCCCT
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCc-EEEEEECCCCCcchhh-H--------HHHHhc
Confidence 2334567899999999999987777666555443 356 5567899999875321 0 111111
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
...+++++||+++ .|+++|+++|.+.+...
T Consensus 356 ---~~~~~i~iSAktg----------~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 356 ---NITQIVHTAAAQK----------QGIDSLETAILEIVQTG 385 (462)
T ss_dssp ---TCCCEEEEBTTTT----------BSHHHHHHHHHHHHTTS
T ss_pred ---cCCcEEEEECCCC----------CCHHHHHHHHHHHHhcc
Confidence 2468999999997 58999999998876543
No 164
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=1.9e-16 Score=139.93 Aligned_cols=146 Identities=17% Similarity=0.235 Sum_probs=88.0
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~ 88 (396)
....++|+++|+.|+|||||+++|++........ ....++.. ......+.+|||||+++|
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~---------------~~~~~~~~-----~~~~~~~~l~Dt~G~~~~ 68 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV---------------SQEPLSAA-----DYDGSGVTLVDFPGHVKL 68 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCC---------------CSSCEEET-----TGGGSSCEEEECCCCGGG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeee---------------ecCceEEE-----EeeCceEEEEECCCcHHH
Confidence 4567899999999999999999998653111000 00111111 114567899999999999
Q ss_pred HHHHHhhhhc----CCEEEEEEecC-C-CCChhHHHHHHHHHH-------cCCCeEEEEEeccCCCCH---HHHHHHHHH
Q psy15217 89 IKNMITGAAQ----MDGAILVCSAA-D-GPMPQTREHILLARQ-------VGVPYIVVFLNKADMVDD---EELLELVEI 152 (396)
Q Consensus 89 ~~~~~~~~~~----~d~~llVvda~-~-g~~~qt~e~l~~~~~-------~~ip~iIvviNK~D~~~~---~~~~~~i~~ 152 (396)
...+...+.. +|++++|+|++ . ..+....+++..+.. .++| +++++||+|+.+. ++..+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~l~~ 147 (218)
T 1nrj_B 69 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFTARPPSKIKDALES 147 (218)
T ss_dssp THHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCC-EEEEEEchHhcccCCHHHHHHHHHH
Confidence 8777777766 89999999998 3 233444444433322 3677 5556899999864 233333444
Q ss_pred HHHHHHhhcCCCCCCCeEEEeccccccc
Q psy15217 153 EIRELLNKYEFPGNDIPIIKGSAKLALE 180 (396)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~i~~Sa~~g~~ 180 (396)
++..+....+ .+++++||+++.+
T Consensus 148 ~~~~~~~~~~-----~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 148 EIQKVIERRK-----KSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHH-----HHHHC--------
T ss_pred HHHHHHHHHh-----ccccccccccccc
Confidence 4555544332 4688999998754
No 165
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.66 E-value=1.4e-15 Score=136.56 Aligned_cols=167 Identities=14% Similarity=0.169 Sum_probs=100.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCC-----
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG----- 84 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG----- 84 (396)
...++|+++|++|+|||||+++|++..... ......++|.+.....+...+..+.||||||
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~ 92 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFH--------------SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTE 92 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSC--------------C-------CCSCEEEEEEETTEEEEEEECCSCC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCc--------------cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCC
Confidence 467999999999999999999998642211 0111224555555556677888999999999
Q ss_pred ------hhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHH-----HcCCCeEEEEEeccCCCCHHHHHHHH---
Q psy15217 85 ------HADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLAR-----QVGVPYIVVFLNKADMVDDEELLELV--- 150 (396)
Q Consensus 85 ------~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~-----~~~ip~iIvviNK~D~~~~~~~~~~i--- 150 (396)
.+.+...+......+|++|+|+|++. ......+.+..+. ....| +++++||+|+.+.....+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~i~~~ 170 (239)
T 3lxx_A 93 VPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSF-MILIFTRKDDLGDTNLHDYLREA 170 (239)
T ss_dssp --CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGG-EEEEEECGGGC------------
T ss_pred CCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccce-EEEEEeCCccCCcccHHHHHHhc
Confidence 34555556666678899999999975 3334444443332 12346 55578999997653322222
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 151 EIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
...++.+++.++. .++++++..+.+. ...++.+|++.+...+
T Consensus 171 ~~~l~~l~~~~~~-----~~~~~~~~~~~~~-----~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 171 PEDIQDLMDIFGD-----RYCALNNKATGAE-----QEAQRAQLLGLIQRVV 212 (239)
T ss_dssp CHHHHHHHHHHSS-----SEEECCTTCCHHH-----HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCC-----EEEEEECCCCccc-----cHHHHHHHHHHHHHHH
Confidence 2356777777664 3666665432000 0136788888877654
No 166
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=2e-15 Score=132.92 Aligned_cols=159 Identities=19% Similarity=0.154 Sum_probs=95.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCe--eEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~~ 87 (396)
...++|+++|.+++|||||+++|++..... .... . ..|.+.... .+..++. .+.+|||+|.+.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~----------~~~~--~-~~g~d~~~~--~i~~~~~~~~l~~~Dt~g~~~ 99 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSM----------DSDC--E-VLGEDTYER--TLMVDGESATIILLDMWENKG 99 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTT----------CCC------CCTTEEEE--EEEETTEEEEEEEECCTTTTH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC----------CCcC--C-ccceeeEEE--EEEECCeeeEEEEeecCCCcc
Confidence 457899999999999999999998531100 0000 0 112222122 2333443 467899999877
Q ss_pred h-HHHHHhhhhcCCEEEEEEecCCC-CChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 88 Y-IKNMITGAAQMDGAILVCSAADG-PMPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 88 ~-~~~~~~~~~~~d~~llVvda~~g-~~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
. ........+.+|++++|+|.++. .+....+.+..+.. .++| +|+|.||+|+.+..... ..+...+...+
T Consensus 100 ~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~r~v~---~~e~~~~a~~~ 175 (211)
T 2g3y_A 100 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRCREVS---VSEGRACAVVF 175 (211)
T ss_dssp HHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCGGGCCSC---HHHHHHHHHHH
T ss_pred hhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHHhcCceEe---HHHHHHHHHHc
Confidence 3 33333345679999999999862 11222222222332 2677 55678999996431110 01222333333
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+ ++++++||++| .++.++++++.+.+
T Consensus 176 ~-----~~~~e~SAk~g----------~~v~elf~~l~~~i 201 (211)
T 2g3y_A 176 D-----CKFIETSAAVQ----------HNVKELFEGIVRQV 201 (211)
T ss_dssp T-----CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred C-----CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 3 57999999997 58999999987754
No 167
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.63 E-value=2.5e-16 Score=148.32 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=101.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC-eeEEEEecCChhh----
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHAD---- 87 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpG~~~---- 87 (396)
.+|+++|.+++|||||+++|+........ ....|.......+..++ ..+.+|||||+.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~----------------~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~ 222 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIAD----------------YHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ 222 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESS----------------TTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCcccc----------------CCccccCceEEEEEeCCCceEEEecCCCCcccccc
Confidence 36899999999999999999754211100 01233333333445444 7899999999644
Q ss_pred ---hHHHHHhhhhcCCEEEEEEecCCC----CChhHHHHHHHHHH-----cCCCeEEEEEeccCCCCHHHHHHHHHHHHH
Q psy15217 88 ---YIKNMITGAAQMDGAILVCSAADG----PMPQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIR 155 (396)
Q Consensus 88 ---~~~~~~~~~~~~d~~llVvda~~g----~~~qt~e~l~~~~~-----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~ 155 (396)
+.......+..+|++++|+|++.. ...+....+..+.. .++|.+ +|+||+|+.+..+. +.
T Consensus 223 ~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~i-lV~NK~Dl~~~~e~-------~~ 294 (342)
T 1lnz_A 223 GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI-IVANKMDMPEAAEN-------LE 294 (342)
T ss_dssp TTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBC-BEEECTTSTTHHHH-------HH
T ss_pred cchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEE-EEEECccCCCCHHH-------HH
Confidence 345556666779999999999762 22233333444444 367755 46799999875321 22
Q ss_pred HHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 156 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
.+.+.+.. ..+++++||+++ .++++|+++|.+.+..
T Consensus 295 ~l~~~l~~---~~~v~~iSA~tg----------~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 295 AFKEKLTD---DYPVFPISAVTR----------EGLRELLFEVANQLEN 330 (342)
T ss_dssp HHHHHCCS---CCCBCCCSSCCS----------STTHHHHHHHHHHHTS
T ss_pred HHHHHhhc---CCCEEEEECCCC----------cCHHHHHHHHHHHHhh
Confidence 33333331 257999999997 5899999999887653
No 168
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.62 E-value=2.9e-15 Score=142.46 Aligned_cols=160 Identities=19% Similarity=0.201 Sum_probs=100.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh--------
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH-------- 85 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~-------- 85 (396)
.|+++|.+|+|||||+++|++.... .+...+.|.+.....+..++..+.++||||+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~----------------~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~l 244 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQK----------------VDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQI 244 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc----------------ccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHH
Confidence 4999999999999999999864211 1112245555555556667788999999996
Q ss_pred -hhhHHHHHhhhhcCCEEEEEEecCCCC---ChhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy15217 86 -ADYIKNMITGAAQMDGAILVCSAADGP---MPQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (396)
Q Consensus 86 -~~~~~~~~~~~~~~d~~llVvda~~g~---~~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l 158 (396)
+.| ..+...+..+|.+++|+|+++.. ..+.......+.. .+.| +|+|.||+|+.+... ......+..+.
T Consensus 245 ve~f-~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~Dl~~~~~--~~~~~~~~~l~ 320 (364)
T 2qtf_A 245 VDAF-FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKP-ILVTLNKIDKINGDL--YKKLDLVEKLS 320 (364)
T ss_dssp HHHH-HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCC-EEEEEECGGGCCSCH--HHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCC-EEEEEECCCCCCchH--HHHHHHHHHHH
Confidence 333 34555678999999999998753 1222222333343 3567 555789999986421 11111222333
Q ss_pred hhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 159 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
..+.. ...+++++||+++ .++++|+++|.+.+..+
T Consensus 321 ~~l~~--~~~~~~~~SA~~g----------~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 321 KELYS--PIFDVIPISALKR----------TNLELLRDKIYQLATQL 355 (364)
T ss_dssp HHHCS--CEEEEEECBTTTT----------BSHHHHHHHHHHHHHHH
T ss_pred HHhcC--CCCcEEEEECCCC----------cCHHHHHHHHHHHhccc
Confidence 33311 1357899999997 58999999988766543
No 169
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.62 E-value=2.3e-15 Score=139.45 Aligned_cols=161 Identities=14% Similarity=0.120 Sum_probs=99.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhHH---
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK--- 90 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~--- 90 (396)
||+++|..|+|||||+.++.+..... .....+.|+......+. ....+.+|||||+++|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~---------------~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l 64 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPL---------------DTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSY 64 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSG---------------GGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCC---------------ccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhh
Confidence 58999999999999998876431100 00112344433333332 236789999999999963
Q ss_pred HHHhhhhcCCEEEEEEecCCCCChhHHHHHH----HHHH--cCCCeEEEEEeccCCCCHHHH---HHHHHHHHHHHHhhc
Q psy15217 91 NMITGAAQMDGAILVCSAADGPMPQTREHIL----LARQ--VGVPYIVVFLNKADMVDDEEL---LELVEIEIRELLNKY 161 (396)
Q Consensus 91 ~~~~~~~~~d~~llVvda~~g~~~qt~e~l~----~~~~--~~ip~iIvviNK~D~~~~~~~---~~~i~~~~~~~l~~~ 161 (396)
.+...++.++++++|+|+++. .....+.+. .+.. -++| ++++.||+|+.+.+++ .+.+..+..+.+.+.
T Consensus 65 ~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ip-illvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~ 142 (331)
T 3r7w_B 65 DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSIN-IEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL 142 (331)
T ss_dssp HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCE-EEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCc-EEEEEECcccCchhhhhhHHHHhhHHHHHHHHhh
Confidence 356678899999999999986 444444432 2222 2667 5556799999875332 223333333333332
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
++....++|+.+||++. ++.+.+..+.+.+.
T Consensus 143 ~~~~~~i~f~eTSAkd~-----------nV~eAFs~iv~~li 173 (331)
T 3r7w_B 143 GLDGVQVSFYLTSIFDH-----------SIYEAFSRIVQKLI 173 (331)
T ss_dssp SCSCCCEEEECCCSSSS-----------HHHHHHHHHHTTSS
T ss_pred cccccCceEEEeccCCC-----------cHHHHHHHHHHHHH
Confidence 22123579999999873 67777766665443
No 170
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=1.3e-14 Score=127.24 Aligned_cols=162 Identities=20% Similarity=0.210 Sum_probs=102.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChh---
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA--- 86 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~--- 86 (396)
.+..+|+++|+.|+|||||+++|++.... .......|.+.......+ ++ .+.++||||+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~--------------~~~~~~~G~~~~~~~~~~--~~-~~~l~Dt~G~~~~~ 86 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSL--------------ARTSKTPGRTQLINLFEV--AD-GKRLVDLPGYGYAE 86 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCEEEEEE--ET-TEEEEECCCCC---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcc--------------ccccCCCccceeeEEEEe--cC-CEEEEECcCCcccc
Confidence 45679999999999999999999754200 000112244433222222 22 57899999973
Q ss_pred -------hhHHHHHh---hhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHH
Q psy15217 87 -------DYIKNMIT---GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRE 156 (396)
Q Consensus 87 -------~~~~~~~~---~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~ 156 (396)
.|...+.. ....+|.+++++|+..+......+....+...++|.++ +.||+|+.+..+... ....+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~nK~D~~s~~~~~~-~~~~~~~ 164 (210)
T 1pui_A 87 VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV-LLTKADKLASGARKA-QLNMVRE 164 (210)
T ss_dssp ---CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEE-EEECGGGSCHHHHHH-HHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEE-EEecccCCCchhHHH-HHHHHHH
Confidence 23222222 22468999999999987665555555566677889554 579999987643222 1234566
Q ss_pred HHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 157 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
++...+. ..+++|+||+++ .++.++++.|.+.++
T Consensus 165 ~~~~~~~---~~~~~~~Sal~~----------~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 165 AVLAFNG---DVQVETFSSLKK----------QGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHGGGCS---CEEEEECBTTTT----------BSHHHHHHHHHHHHC
T ss_pred HHHhcCC---CCceEEEeecCC----------CCHHHHHHHHHHHHh
Confidence 6655442 367899999997 589999999887654
No 171
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.60 E-value=1.4e-14 Score=137.95 Aligned_cols=156 Identities=20% Similarity=0.189 Sum_probs=100.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh-
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY- 88 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~- 88 (396)
...++|+++|.+|+|||||+++|++.....+. ..+.|.+.....+...+..+.+|||||+.++
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 228 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIAS----------------YPFTTRGINVGQFEDGYFRYQIIDTPGLLDRP 228 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEEC----------------CTTCSSCEEEEEEEETTEEEEEEECTTTSSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC----------------CCCeeeceeEEEEEecCceEEEEeCCCccccc
Confidence 45689999999999999999999864311100 0123333333344556778999999997443
Q ss_pred -------HHHHHhh-hhcCCEEEEEEecCCCC--C-hhHHHHHHHHHH-c-CCCeEEEEEeccCCCCHHHHHHHHHHHHH
Q psy15217 89 -------IKNMITG-AAQMDGAILVCSAADGP--M-PQTREHILLARQ-V-GVPYIVVFLNKADMVDDEELLELVEIEIR 155 (396)
Q Consensus 89 -------~~~~~~~-~~~~d~~llVvda~~g~--~-~qt~e~l~~~~~-~-~ip~iIvviNK~D~~~~~~~~~~i~~~~~ 155 (396)
....... ...+|.+++|+|++... . ....+.+..+.. . +.| +++++||+|+.+..+. + +..
T Consensus 229 ~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~Dl~~~~~~-~----~~~ 302 (357)
T 2e87_A 229 ISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP-FLVVINKIDVADEENI-K----RLE 302 (357)
T ss_dssp STTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTTTCCHHHH-H----HHH
T ss_pred hhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC-EEEEEECcccCChHHH-H----HHH
Confidence 1122222 34699999999987632 2 222333333333 2 677 5557899999876432 1 233
Q ss_pred HHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 156 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+++.. ..|++++||++| .|+++|++++.+.+
T Consensus 303 ~~~~~~-----~~~~~~iSA~~g----------~gi~~l~~~i~~~l 334 (357)
T 2e87_A 303 KFVKEK-----GLNPIKISALKG----------TGIDLVKEEIIKTL 334 (357)
T ss_dssp HHHHHT-----TCCCEECBTTTT----------BTHHHHHHHHHHHH
T ss_pred HHHHhc-----CCCeEEEeCCCC----------cCHHHHHHHHHHHH
Confidence 344433 357999999997 68999999987755
No 172
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.59 E-value=7.5e-15 Score=127.29 Aligned_cols=159 Identities=19% Similarity=0.151 Sum_probs=91.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCe--eEEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~~ 87 (396)
.+.++|+++|.+|+|||||+++|++..... .... ...|.+.... .+..++. .+.+|||+|.+.
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~----------~~~~---~~~~~~~~~~--~~~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSM----------DSDX---EVLGEDTYER--TLMVDGESATIILLDMWENKG 68 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----------------GGGCTTEEEE--EEEETTEEEEEEEECCCCC--
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCc----------Cccc---cccceeEEEE--EEEECCeEEEEEEEEeccCcc
Confidence 457999999999999999999998532100 0000 0112222222 2333443 457899999765
Q ss_pred h-HHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 88 Y-IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 88 ~-~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
. ........+.+|++++|+|.++.. +....+.+..+.. .++| ++++.||+|+....... ..+...+....
T Consensus 69 ~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~r~v~---~~~~~~~a~~~ 144 (192)
T 2cjw_A 69 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRXREVS---VSEGRAXAVVF 144 (192)
T ss_dssp --CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHT
T ss_pred hhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCe-EEEEEechhhhcccccc---HHHHHHHHHHh
Confidence 2 112233455799999999998621 1122222222322 2677 55578999986421110 01222222333
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+ .+++++||++| .++.++++++.+.+
T Consensus 145 ~-----~~~~e~SA~~g----------~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 145 D-----XKFIETSAAVQ----------HNVKELFEGIVRQV 170 (192)
T ss_dssp T-----CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred C-----CceEEeccccC----------CCHHHHHHHHHHHH
Confidence 2 57999999997 58999999887654
No 173
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.59 E-value=1.2e-15 Score=153.15 Aligned_cols=160 Identities=19% Similarity=0.177 Sum_probs=100.7
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEee------eeEE--eeCCeeEEEE
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA------HIEY--ETKARHYAHV 80 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~------~~~~--~~~~~~~~ii 80 (396)
....++|+++|.+|+|||||+++|++...... .....|.++... ...+ +.....+.+|
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~--------------~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 103 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPK--------------ESQTHGLNVVTKQAPNIKGLENDDELKECLFHFW 103 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCccceEEEEeccccccceeecCCCceEEEEEE
Confidence 45679999999999999999999986432110 001112222211 0111 1225679999
Q ss_pred ecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcC--CCeEEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy15217 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVG--VPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (396)
Q Consensus 81 DtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~--ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l 158 (396)
||||++.|.......++.+|++++|+|++.. ......+..+...+ .|. |+|.||+|+.+..+.. ..+++..+
T Consensus 104 Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pv-ilV~NK~Dl~~~~~v~---~~~~~~~~ 177 (535)
T 3dpu_A 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPV-IVVMNKIDENPSYNIE---QKKINERF 177 (535)
T ss_dssp CCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCE-EEEECCTTTCTTCCCC---HHHHHHHC
T ss_pred ECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCE-EEEEECCCcccccccC---HHHHHHHH
Confidence 9999999887777778889999999999864 34455555666554 784 5568999997642211 12345555
Q ss_pred hhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 159 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
...+ .+++++||++| .|+.+|++++.+.+.
T Consensus 178 ~~~~-----~~~~~vSA~~g----------~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 178 PAIE-----NRFHRISCKNG----------DGVESIAKSLKSAVL 207 (535)
T ss_dssp GGGT-----TCEEECCC---------------CTTHHHHHHHHHT
T ss_pred HhcC-----CceEEEecCcc----------cCHHHHHHHHHHHHh
Confidence 5544 47999999998 477777777766554
No 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.58 E-value=8.3e-15 Score=127.64 Aligned_cols=157 Identities=20% Similarity=0.154 Sum_probs=98.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCe--eEEEEecCChhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHADY 88 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~~~ 88 (396)
..++|+++|+.|+|||||+++|++..... +....++.+.....+..++. .+.+||+||+++|
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~----------------~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~ 67 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL----------------ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 67 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC----------------CCCCccceeEEEEEEEECCEEEEEEEEECCCchhh
Confidence 36899999999999999999998742110 00111222222233344443 5678999999988
Q ss_pred HHHHHhhhhcCCEEEEEEecCCCCC-hhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy15217 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (396)
Q Consensus 89 ~~~~~~~~~~~d~~llVvda~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~ 164 (396)
..........+|++++|+|...... .....++..+.. .+.| +++++||+|+.+..... ..+.+.+....+
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~---~~~a~~l~~~~~-- 141 (199)
T 2f9l_A 68 RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVP---TDEARAFAEKNN-- 141 (199)
T ss_dssp TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHTT--
T ss_pred hhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCcC---HHHHHHHHHHcC--
Confidence 6655556678999999999986321 222223333332 2455 66678999986431110 112344454433
Q ss_pred CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 165 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++++.+||+++ .++.++++.+.+.+
T Consensus 142 ---~~~~d~Sal~~----------~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 142 ---LSFIETSALDS----------TNVEEAFKNILTEI 166 (199)
T ss_dssp ---CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999987 57888888876644
No 175
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.58 E-value=1.9e-14 Score=147.96 Aligned_cols=127 Identities=18% Similarity=0.201 Sum_probs=77.8
Q ss_pred eeEEEEecCChhh---hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHH-HHHHcCCCeEEEEEeccCCCCHH------
Q psy15217 75 RHYAHVDCPGHAD---YIKNMITGAAQMDGAILVCSAADGPMPQTREHIL-LARQVGVPYIVVFLNKADMVDDE------ 144 (396)
Q Consensus 75 ~~~~iiDtpG~~~---~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~-~~~~~~ip~iIvviNK~D~~~~~------ 144 (396)
..+.||||||..+ ....+...+..+|++++|+|++++......+.+. .+...+.| +++|+||+|+.+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGGCSSTTC
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECcccccccccChhh
Confidence 4689999999765 3455566778899999999999887776666654 34445778 56678999986532
Q ss_pred -HHHH----HHHHHHHHHHhhc-C---CCCCCCeEEEeccccccc----CCCCCCCCCcHHHHHHHhhhhC
Q psy15217 145 -ELLE----LVEIEIRELLNKY-E---FPGNDIPIIKGSAKLALE----GDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 145 -~~~~----~i~~~~~~~l~~~-~---~~~~~~~~i~~Sa~~g~~----~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+..+ .+...+...+... + +.....+++++||+.+.. ....-+.+.|+.+|+++|.+.+
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 0111 1222222223221 1 111235799999992211 1111112368888888877654
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.57 E-value=1.2e-14 Score=132.35 Aligned_cols=118 Identities=11% Similarity=0.103 Sum_probs=78.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhh-
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY- 88 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~- 88 (396)
.+.++|+++|++|+|||||+++|++..... .. ...+.|.......+..++..++||||||+.+|
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~----------~~-----~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR----------VS-----PFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSC----------CC-----SSCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcc----------cC-----CCCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence 468999999999999999999998642111 00 11244555555666778889999999998665
Q ss_pred ------HHHHHhhh--hcCCEEEEEEecCC-CCChhHHHHHHHHHHc-C---CCeEEEEEeccCCCC
Q psy15217 89 ------IKNMITGA--AQMDGAILVCSAAD-GPMPQTREHILLARQV-G---VPYIVVFLNKADMVD 142 (396)
Q Consensus 89 ------~~~~~~~~--~~~d~~llVvda~~-g~~~qt~e~l~~~~~~-~---ip~iIvviNK~D~~~ 142 (396)
.+.....+ ..+|++++|+|.+. .......+.+..+... + ..++++++||+|+.+
T Consensus 99 ~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 99 YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 22222222 27899999988765 3444444555555443 2 123666789999863
No 177
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=7e-15 Score=139.93 Aligned_cols=173 Identities=20% Similarity=0.239 Sum_probs=87.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCe--eEEEEecCChhh-
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHAD- 87 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~~- 87 (396)
..++|+++|+.|+|||||+++|++......+ .......+...+++++.....+...+. .+++|||||+.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~-------~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~ 108 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPER-------VIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA 108 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC----------------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCC-------cccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence 4689999999999999999998753211100 011111122233444433333333333 688999999933
Q ss_pred ------hHH----------HHHhhhh----------cCCEEEEEEec-CCCCChhHHHHHHHHHHcCCCeEEEEEeccCC
Q psy15217 88 ------YIK----------NMITGAA----------QMDGAILVCSA-ADGPMPQTREHILLARQVGVPYIVVFLNKADM 140 (396)
Q Consensus 88 ------~~~----------~~~~~~~----------~~d~~llVvda-~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~ 140 (396)
|.. ....... .+|+++++|++ .++......+.+..+ ..++| +|+|+||+|+
T Consensus 109 ~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~p-iIlV~NK~Dl 186 (361)
T 2qag_A 109 INCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVN-IVPVIAKADT 186 (361)
T ss_dssp -------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SC-EEEEEECCSS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCC-EEEEEECCCC
Confidence 311 1111111 23578888886 456666555554443 24677 5667899999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 141 VDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 141 ~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
.+..+. ...+.++.++++..+ ++++++||+++.+. +.+..+++.+...+|.+
T Consensus 187 ~~~~ev-~~~k~~i~~~~~~~~-----i~~~~~Sa~~~~~~-------e~~~~l~~~i~~~ip~~ 238 (361)
T 2qag_A 187 LTLKER-ERLKKRILDEIEEHN-----IKIYHLPDAESDED-------EDFKEQTRLLKASIPFS 238 (361)
T ss_dssp SCHHHH-HHHHHHHHHHTTCC------CCSCCCC----------------CHHHHHHHHHTCSCE
T ss_pred CCHHHH-HHHHHHHHHHHHHCC-----CCEEeCCCcCCCcc-------hhHHHHHHHHHhcCCCC
Confidence 986443 233345666665543 57999999987531 35667788887766644
No 178
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.56 E-value=6e-14 Score=128.34 Aligned_cols=180 Identities=12% Similarity=0.072 Sum_probs=103.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
...++|+++|++|+|||||+++|++....... ...+.|.+.....++..+..+.||||||+.++.
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS---------------PFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC---------------SSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccc---------------CCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence 46899999999999999999999864211100 012334334444566678889999999986542
Q ss_pred -------HHHHhh--hhcCCEEEEEEecCC-CCChhHHHHHHHHHHc-C----CCeEEEEEeccCCCCHH-----HHHHH
Q psy15217 90 -------KNMITG--AAQMDGAILVCSAAD-GPMPQTREHILLARQV-G----VPYIVVFLNKADMVDDE-----ELLEL 149 (396)
Q Consensus 90 -------~~~~~~--~~~~d~~llVvda~~-g~~~qt~e~l~~~~~~-~----ip~iIvviNK~D~~~~~-----~~~~~ 149 (396)
...... ...+|++++|+|.+. .......+.+..+... + .| +++++||+|+.+++ +..+.
T Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~-iivV~nK~Dl~~~~~~~~~~~~~~ 180 (270)
T 1h65_A 102 YINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK-AIVALTHAQFSPPDGLPYDEFFSK 180 (270)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGG-EEEEEECCSCCCGGGCCHHHHHHH
T ss_pred cchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccC-EEEEEECcccCCcCCCCHHHHHHH
Confidence 222222 236899999988765 3444555566555433 4 35 66678999997642 33333
Q ss_pred HHHHHHHHHhh-cCCC----CCCCeEEEecccccc--cCCC---CCCCCCcHHHHHHHhhhhCCCC
Q psy15217 150 VEIEIRELLNK-YEFP----GNDIPIIKGSAKLAL--EGDT---GPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 150 i~~~~~~~l~~-~~~~----~~~~~~i~~Sa~~g~--~~~~---~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
....+...++. .++. ...+|+..+++.... +... .....+....|++.|...+...
T Consensus 181 ~~~~l~~~~~~~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~ 246 (270)
T 1h65_A 181 RSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNK 246 (270)
T ss_dssp HHHHHHHHHHHHTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcC
Confidence 33444444432 1111 012577666553211 1000 0001122458888888766543
No 179
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.55 E-value=1.5e-14 Score=134.28 Aligned_cols=175 Identities=14% Similarity=0.122 Sum_probs=97.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhh-hcCCc-c-ccc--------------------cccCCC--hhH------hh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSK-KFGGE-A-KSY--------------------DQIDAA--PEE------KA 58 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~-~~~~~-~-~~~--------------------~~~d~~--~~e------~~ 58 (396)
...++|+++|.+++|||||+++|++.... ...+. . ... ...+.. ..+ +-
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999975421 10000 0 000 000000 000 00
Q ss_pred ----cCceEEeeeeEEee-CCeeEEEEecCChh-------------hhHHHHHhhhhcCCEEE-EEEecCCCCChhHH-H
Q psy15217 59 ----RGITINTAHIEYET-KARHYAHVDCPGHA-------------DYIKNMITGAAQMDGAI-LVCSAADGPMPQTR-E 118 (396)
Q Consensus 59 ----~g~t~~~~~~~~~~-~~~~~~iiDtpG~~-------------~~~~~~~~~~~~~d~~l-lVvda~~g~~~qt~-e 118 (396)
.|+........+.. ....+.||||||+. .+...+..++..++.++ +|+|++.+...+.. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 22222211122222 24689999999953 45555666777888776 68999987766654 3
Q ss_pred HHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHh
Q psy15217 119 HILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKAL 198 (396)
Q Consensus 119 ~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l 198 (396)
.+..+...+.| +++|+||+|+.+.... ....++..+. .+.....+++++||+++. ++.+|++++
T Consensus 184 ~~~~~~~~~~~-~i~V~NK~Dl~~~~~~---~~~~~~~~~~--~~~~~~~~v~~~SA~~~~----------gi~~l~~~l 247 (299)
T 2aka_B 184 IAKEVDPQGQR-TIGVITKLDLMDEGTD---ARDVLENKLL--PLRRGYIGVVNRSQKDID----------GKKDITAAL 247 (299)
T ss_dssp HHHHHCTTCSS-EEEEEECGGGSCTTCC---CHHHHTTCSS--CCTTCEEECCCCCCBCTT----------SCBCHHHHH
T ss_pred HHHHhCCCCCe-EEEEEEccccCCCCch---HHHHHhCCcC--cCCCCcEEEECCChhhcc----------ccccHHHHH
Confidence 45555556778 4556899999865221 1111211111 111112578999999973 555556555
Q ss_pred hh
Q psy15217 199 DT 200 (396)
Q Consensus 199 ~~ 200 (396)
..
T Consensus 248 ~~ 249 (299)
T 2aka_B 248 AA 249 (299)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 180
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.54 E-value=8.6e-15 Score=136.95 Aligned_cols=119 Identities=12% Similarity=0.048 Sum_probs=72.7
Q ss_pred CCeeEEEEecCChhh-------------hHHHHHhhhhcCCEEEEEEec-CCCCChhH-HHHHHHHHHcCCCeEEEEEec
Q psy15217 73 KARHYAHVDCPGHAD-------------YIKNMITGAAQMDGAILVCSA-ADGPMPQT-REHILLARQVGVPYIVVFLNK 137 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~-------------~~~~~~~~~~~~d~~llVvda-~~g~~~qt-~e~l~~~~~~~ip~iIvviNK 137 (396)
....+.||||||+.+ +...+..++..+|++++|+|+ +.+...+. .+.+..+...+.|. ++|+||
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~-i~v~NK 207 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRT-IGVITK 207 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSE-EEEEEC
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcE-EEEEcC
Confidence 456899999999753 556666778899999999997 45544333 34555555568885 456899
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCC
Q psy15217 138 ADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (396)
Q Consensus 138 ~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~ 204 (396)
+|+.+.... ....+...+. . ...+++++|+..+.+... +.++.++++.+..+++.
T Consensus 208 ~Dl~~~~~~---~~~~~~~~~~--~---~~~~~~~v~~~sa~~~~~----~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTD---AMEVLTGRVI--P---LTLGFIGVINRSQEDIIA----KKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCC---CHHHHTTSSS--C---CTTCEEECCCCCHHHHSS----SCCHHHHHHHHHHHHHT
T ss_pred cccCCcchH---HHHHHhCCCc--c---CCCCeEEEecCChhhhcc----CCCHHHHHHHHHHHHhC
Confidence 999865320 1111111111 1 124566666665433111 14788888888776653
No 181
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.4e-14 Score=125.17 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=69.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhhhH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~ 89 (396)
.+.++|+++|+.|+|||||+++|++...... ......+++. ......+.+|||||+.+|.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~-------------~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~ 105 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-------------VVSQEPLSAA-------DYDGSGVTLVDFPGHVKLR 105 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CCCCTTCSEEEETTCCBSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc-------------cccCCCceee-------eecCCeEEEEECCCCchHH
Confidence 4678999999999999999999986421110 0000111111 1145678999999998875
Q ss_pred HHHHhhhh----cCCEEEEEEecCCCC--ChhHHHHHHHHHH-------cCCCeEEEEEeccCCCCH
Q psy15217 90 KNMITGAA----QMDGAILVCSAADGP--MPQTREHILLARQ-------VGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 90 ~~~~~~~~----~~d~~llVvda~~g~--~~qt~e~l~~~~~-------~~ip~iIvviNK~D~~~~ 143 (396)
..+...+. .+|++++|+|++... +....+++..+.. .++| +++++||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFTA 171 (193)
T ss_dssp CCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTTC
T ss_pred HHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEchHhcCC
Confidence 55544444 389999999998211 1222233322221 2677 5556899999764
No 182
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.52 E-value=2.2e-14 Score=136.38 Aligned_cols=174 Identities=18% Similarity=0.126 Sum_probs=103.1
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCC-------------ChhH---hhcCceEEeee-----
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDA-------------APEE---KARGITINTAH----- 67 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~-------------~~~e---~~~g~t~~~~~----- 67 (396)
.....+|+++|++|+|||||+++|.......+...... ..|. ...+ ...+..+....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi--~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~ 153 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL--AVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTL 153 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--EEC----------------CHHHHTCTTEEEECCC--CCH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE--ecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccc
Confidence 34567999999999999999999987654332211100 0110 0000 00111111000
Q ss_pred -----------eEEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEe
Q psy15217 68 -----------IEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLN 136 (396)
Q Consensus 68 -----------~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviN 136 (396)
..++..+..+.||||||...- ....+..+|.+++|+|+..+...+... ...++.|.++ ++|
T Consensus 154 ~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~iv-VlN 225 (355)
T 3p32_A 154 GGVTRATRETVVLLEAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIV-VVN 225 (355)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEE-EEE
T ss_pred cchhHHHHHHHHHHhhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEE-EEE
Confidence 011335678999999995432 223347899999999998754332211 1123457555 679
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhhcCCC--CCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 137 KADMVDDEELLELVEIEIRELLNKYEFP--GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 137 K~D~~~~~~~~~~i~~~~~~~l~~~~~~--~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
|+|+.+... .+....++...+..+... .+..|++++||++| .|+++|++++.+.++
T Consensus 226 K~Dl~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g----------~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 226 KADGEHHKE-ARLAARELSAAIRLIYPREALWRPPVLTMSAVEG----------RGLAELWDTVERHRQ 283 (355)
T ss_dssp CCCGGGHHH-HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGT----------BSHHHHHHHHHHHHH
T ss_pred CCCCcChhH-HHHHHHHHHHHHhhccccccCCCCceEEEEcCCC----------CCHHHHHHHHHHHHH
Confidence 999976533 233334555555444311 23578999999997 689999999887654
No 183
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.52 E-value=4.6e-14 Score=122.12 Aligned_cols=157 Identities=18% Similarity=0.130 Sum_probs=99.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCee--EEEEecCChhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARH--YAHVDCPGHAD 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~--~~iiDtpG~~~ 87 (396)
...++|+++|+.|+|||||+++|++..... +....++.+.....+..++.. +.+||+||+++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~----------------~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL----------------ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCC----------------SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC----------------CCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 346899999999999999999998642111 001123333333344445544 45799999988
Q ss_pred hHHHHHhhhhcCCEEEEEEecCCCC-ChhHHHHHHHHHH---cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 88 YIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 88 ~~~~~~~~~~~~d~~llVvda~~g~-~~qt~e~l~~~~~---~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
|...+......+|.+++|+|..... +......+..+.. .+.| +++++||+|+.+..... ..+.+.+....+
T Consensus 91 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~---~~~a~~l~~~~~- 165 (191)
T 1oix_A 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVP---TDEARAFAEKNG- 165 (191)
T ss_dssp SSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT-
T ss_pred hhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccC---HHHHHHHHHHcC-
Confidence 8666666667889999999987622 1112222322322 2445 66678999986431110 112344444433
Q ss_pred CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 164 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
++++.+||+++ .++.++++.+.+.
T Consensus 166 ----~~~ld~Sald~----------~~v~~l~~~l~~~ 189 (191)
T 1oix_A 166 ----LSFIETSALDS----------TNVEAAFQTILTE 189 (191)
T ss_dssp ----CEEEECCTTTC----------TTHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 57899999997 5889999988653
No 184
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.51 E-value=8e-14 Score=126.37 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=56.1
Q ss_pred cCCEEEEEEecCCC---CChhHHHHHHHHH----HcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15217 98 QMDGAILVCSAADG---PMPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 170 (396)
Q Consensus 98 ~~d~~llVvda~~g---~~~qt~e~l~~~~----~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~ 170 (396)
.+|++++|+|+++. .+.....++..+. ..++| +++|.||+|+.+.... ++...+.+... .+++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~v-----~~~~~~~~~~~----~~~~ 231 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGVERYI-----RDAHTFALSKK----NLQV 231 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCC-EEEEEECGGGBCHHHH-----HHHHHHHHTSS----SCCE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCC-EEEEEEcccccccHHH-----HHHHHHHHhcC----CCeE
Confidence 69999999999874 3333333333332 24678 5556899999765322 24445554321 3679
Q ss_pred EEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 171 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 171 i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+++||+++ .++.+++++|.+.+
T Consensus 232 ~e~SAk~g----------~gv~elf~~l~~~l 253 (255)
T 3c5h_A 232 VETSARSN----------VNVDLAFSTLVQLI 253 (255)
T ss_dssp EECBTTTT----------BSHHHHHHHHHHHH
T ss_pred EEEECCCC----------CCHHHHHHHHHHHh
Confidence 99999997 58999999987643
No 185
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.47 E-value=3.6e-13 Score=127.23 Aligned_cols=174 Identities=16% Similarity=0.089 Sum_probs=97.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccc-----------cccCCChhHh----hcCceEEeee-------
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSY-----------DQIDAAPEEK----ARGITINTAH------- 67 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~-----------~~~d~~~~e~----~~g~t~~~~~------- 67 (396)
.+...|+++|++|+|||||++.|.+.....++...... ...+....+. .++.-.....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 45678999999999999999999876543322111000 0001000000 0111000000
Q ss_pred --------eEEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccC
Q psy15217 68 --------IEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 139 (396)
Q Consensus 68 --------~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D 139 (396)
..++..+..+.||||||+.++.... ...+|.+++|+|+..+...+.... ...++|.++ ++||+|
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~iv-v~NK~D 205 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLI-VINKDD 205 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC------CCCCH----HHHHHCSEE-EECCCC
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEE-EEECCC
Confidence 0112456789999999977654432 478999999999976532221111 113567555 679999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCC--CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 140 MVDDEELLELVEIEIRELLNKYEF--PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 140 ~~~~~~~~~~i~~~~~~~l~~~~~--~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+.+.... .....+++..+..++. ..+..+++++||++| .|+.+|+++|.+.+
T Consensus 206 l~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g----------~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 206 GDNHTNV-AIARHMYESALHILRRKYDEWQPRVLTCSALEK----------RGIDEIWHAIIDFK 259 (341)
T ss_dssp TTCHHHH-HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGT----------BSHHHHHHHHHHHH
T ss_pred CCChHHH-HHHHHHHHHHHHhccccccCCCCcEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 9875332 2222345555444332 112468999999997 58999999887754
No 186
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.42 E-value=7.8e-13 Score=132.34 Aligned_cols=136 Identities=21% Similarity=0.174 Sum_probs=85.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhh--hcCC---ccccccccCCChhHhhcCceEE---------e---------e
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSK--KFGG---EAKSYDQIDAAPEEKARGITIN---------T---------A 66 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~--~~~~---~~~~~~~~d~~~~e~~~g~t~~---------~---------~ 66 (396)
....+|+++|+.|+|||||+++|++.... .... ..+..........+...|.+.. . .
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999976431 1100 0000000000000000010000 0 0
Q ss_pred eeEEeeCC---eeEEEEecCChhh-----------hHHHHHhhhhcCCEEEEEEecCC-CCChhHHHHHHHHHHcCCCeE
Q psy15217 67 HIEYETKA---RHYAHVDCPGHAD-----------YIKNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYI 131 (396)
Q Consensus 67 ~~~~~~~~---~~~~iiDtpG~~~-----------~~~~~~~~~~~~d~~llVvda~~-g~~~qt~e~l~~~~~~~ip~i 131 (396)
...+.... ..+.||||||+.+ |...+...+..+|++++|+|+++ +...+..+++..+...+.| +
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-v 221 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK-I 221 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-E
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-E
Confidence 00111111 3689999999875 66777777889999999999988 5778888888777777778 5
Q ss_pred EEEEeccCCCCHHHH
Q psy15217 132 VVFLNKADMVDDEEL 146 (396)
Q Consensus 132 IvviNK~D~~~~~~~ 146 (396)
++|+||+|+.+.++.
T Consensus 222 ilVlNK~Dl~~~~el 236 (550)
T 2qpt_A 222 RVVLNKADMVETQQL 236 (550)
T ss_dssp EEEEECGGGSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 557899999986443
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.42 E-value=2.4e-13 Score=130.57 Aligned_cols=83 Identities=18% Similarity=0.121 Sum_probs=45.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeE--Ee-------------------
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE--YE------------------- 71 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~--~~------------------- 71 (396)
++|+++|.+|+|||||+++|++....... ..+.|++..... +.
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~----------------~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~ 64 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIAN----------------YPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEY 64 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccC----------------CCCcccCCceEEEeeccCCchHHhhhhcccccccc
Confidence 58999999999999999999865311000 012232221111 10
Q ss_pred eC---CeeEEEEecCChhhhH-------HHHHhhhhcCCEEEEEEecCCC
Q psy15217 72 TK---ARHYAHVDCPGHADYI-------KNMITGAAQMDGAILVCSAADG 111 (396)
Q Consensus 72 ~~---~~~~~iiDtpG~~~~~-------~~~~~~~~~~d~~llVvda~~g 111 (396)
.. ...+.||||||+.+.. ......++.+|++++|+|+.++
T Consensus 65 ~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 65 RNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred cCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 11 2468899999975421 2223456789999999999875
No 188
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.40 E-value=4.3e-12 Score=120.05 Aligned_cols=173 Identities=16% Similarity=0.112 Sum_probs=92.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccc----------------cccCCChhHhhc------------Cce
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSY----------------DQIDAAPEEKAR------------GIT 62 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~----------------~~~d~~~~e~~~------------g~t 62 (396)
+...|+++|.+|||||||+++|++.....++...... ..+..+..+... |.|
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 4678999999999999999999976433321110000 000000000000 011
Q ss_pred EEee--eeEEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCC
Q psy15217 63 INTA--HIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM 140 (396)
Q Consensus 63 ~~~~--~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~ 140 (396)
.+.. ...++..+..+.|+||||..... ......+|++++|+|+..+...+ .+.. ..+..|.++ ++||+|+
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~---~i~~-~il~~~~iv-VlNK~Dl 224 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQ---GIKR-GIIEMADLV-AVTKSDG 224 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEE-EECCCSG
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHH---HhHH-HHHhcCCEE-EEeeecC
Confidence 0000 00112356789999999954221 22246799999999998754222 1111 224667655 5799999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCC--CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 141 VDDEELLELVEIEIRELLNKYEF--PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 141 ~~~~~~~~~i~~~~~~~l~~~~~--~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
.+.... .....++...++.... ..+..+++++||+++ .|+.+|+++|.+.+
T Consensus 225 ~~~~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g----------~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 225 DLIVPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSG----------EGISEMWDKMKDFQ 277 (349)
T ss_dssp GGHHHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred CCchhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 764322 1122234444433211 012468999999997 58999999887754
No 189
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.36 E-value=6.7e-13 Score=117.33 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=95.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCC----hhH-hhcCceEEe-ee---eEE----------e
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAA----PEE-KARGITINT-AH---IEY----------E 71 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~----~~e-~~~g~t~~~-~~---~~~----------~ 71 (396)
...+|+++|+.|+|||||+++|+.......+ .... ..|.. ... ...|.+... .. ..+ .
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~-~~~i--~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVK-IGAM--LGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKK 105 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSC-EEEE--ECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGG
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCe-EEEE--ecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHh
Confidence 4579999999999999999999976432210 0000 01110 011 111333211 10 011 2
Q ss_pred eCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHH-HHHHHH
Q psy15217 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE-ELLELV 150 (396)
Q Consensus 72 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~-~~~~~i 150 (396)
..+..+.+|||||+.... ......++.+++|+|+..+...+. ......+.|.++ ++||+|+.+.. ...+
T Consensus 106 ~~~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~~~----~~~~~~~~~~ii-v~NK~Dl~~~~~~~~~-- 175 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDVVE----KHPEIFRVADLI-VINKVALAEAVGADVE-- 175 (221)
T ss_dssp GTTCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTHHH----HCHHHHHTCSEE-EEECGGGHHHHTCCHH--
T ss_pred cCCCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchhhh----hhhhhhhcCCEE-EEecccCCcchhhHHH--
Confidence 345678999999941100 000124788999999988653322 122335678665 57999986431 1122
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 151 EIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
++.+.++.++ ...+++++||++| .++.+|++++.+.+.
T Consensus 176 --~~~~~~~~~~---~~~~i~~~Sa~~g----------~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 176 --KMKADAKLIN---PRAKIIEMDLKTG----------KGFEEWIDFLRGILN 213 (221)
T ss_dssp --HHHHHHHHHC---TTSEEEECBTTTT----------BTHHHHHHHHHHHHC
T ss_pred --HHHHHHHHhC---CCCeEEEeecCCC----------CCHHHHHHHHHHHHH
Confidence 2333333332 2468999999997 689999999987654
No 190
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.36 E-value=5.7e-13 Score=126.54 Aligned_cols=163 Identities=13% Similarity=0.093 Sum_probs=86.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhh-hcCCc-cc-cc------------cc--------cCCC--hhH------hh-
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSK-KFGGE-AK-SY------------DQ--------IDAA--PEE------KA- 58 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~-~~~~~-~~-~~------------~~--------~d~~--~~e------~~- 58 (396)
...+|+++|.+++|||||+++|++.... .+.+. .+ .. .. .+.. ..+ +-
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4569999999999999999999875321 11000 00 00 00 0100 000 11
Q ss_pred ---cCceEEeeeeEEee-CCeeEEEEecCChh-------------hhHHHHHhhhhcC-CEEEEEEecCCCCChhHHH-H
Q psy15217 59 ---RGITINTAHIEYET-KARHYAHVDCPGHA-------------DYIKNMITGAAQM-DGAILVCSAADGPMPQTRE-H 119 (396)
Q Consensus 59 ---~g~t~~~~~~~~~~-~~~~~~iiDtpG~~-------------~~~~~~~~~~~~~-d~~llVvda~~g~~~qt~e-~ 119 (396)
.|+........+.. ....++||||||.. .+...+..++..+ +++++|+|++.+...+... .
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 23322222222222 34679999999952 3444444555555 4556677887766555442 4
Q ss_pred HHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccc
Q psy15217 120 ILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLAL 179 (396)
Q Consensus 120 l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~ 179 (396)
+..+...+.|. ++|+||+|+.+....... .+.. +...+.....+++++||+++.
T Consensus 190 ~~~~~~~~~~~-i~V~NK~Dl~~~~~~~~~---~~~~--~~~~l~~~~~~v~~~SA~~~~ 243 (353)
T 2x2e_A 190 AKEVDPQGQRT-IGVITKLDLMDEGTDARD---VLEN--KLLPLRRGYIGVVNRSQKDID 243 (353)
T ss_dssp HHHHCTTCTTE-EEEEECGGGSCTTCCCHH---HHTT--CSSCCTTCEEECCCCCHHHHH
T ss_pred HHHhCcCCCce-EEEeccccccCcchhHHH---HHhC--CcccccCCceEEEeCCccccc
Confidence 44444557884 456899999864220011 1111 011111112578899999974
No 191
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.34 E-value=3.7e-11 Score=109.00 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=70.6
Q ss_pred eeEEEEecCChhhhHHH------HHhhhhcCCEEEEEEecCCCCChhHHHH-----HHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 75 RHYAHVDCPGHADYIKN------MITGAAQMDGAILVCSAADGPMPQTREH-----ILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 75 ~~~~iiDtpG~~~~~~~------~~~~~~~~d~~llVvda~~g~~~qt~e~-----l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
+.+.||||||..++... +...+.. +.+++++|+........... +......++|.+ +++||+|+.+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTI-PALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEE-EEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeE-EEEeccccccc
Confidence 57999999998776432 2234556 89999999976555443221 122334578855 56899999875
Q ss_pred HHHHHHHHHH---HHH---------------------HHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhh
Q psy15217 144 EELLELVEIE---IRE---------------------LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (396)
Q Consensus 144 ~~~~~~i~~~---~~~---------------------~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~ 199 (396)
.+. +.+.+. +.. +++.++. ..+++++||+++ .++++|++++.
T Consensus 187 ~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~SA~~~----------~gi~~l~~~i~ 252 (262)
T 1yrb_A 187 EEK-ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP---PVRVLYLSAKTR----------EGFEDLETLAY 252 (262)
T ss_dssp HHH-HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC---CCCCEECCTTTC----------TTHHHHHHHHH
T ss_pred ccH-HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC---cccceEEEecCc----------ccHHHHHHHHH
Confidence 321 111111 111 1233332 247999999997 68999999998
Q ss_pred hhCC
Q psy15217 200 TYIP 203 (396)
Q Consensus 200 ~~l~ 203 (396)
+.++
T Consensus 253 ~~~~ 256 (262)
T 1yrb_A 253 EHYC 256 (262)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7653
No 192
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.34 E-value=6.3e-12 Score=121.02 Aligned_cols=154 Identities=22% Similarity=0.290 Sum_probs=93.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC-eeEEEEecCChhh----
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHAD---- 87 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpG~~~---- 87 (396)
-.|+++|++|||||||+++|++........ ...|.......+..++ ..++++|+||+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~----------------~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~ 221 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPY----------------PFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 221 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCC----------------TTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGG
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCc----------------ccceecceeeEEEecCcceEEEEeccccccchhh
Confidence 358999999999999999997642211000 0112212222233343 6789999999632
Q ss_pred ---hHHHHHhhhhcCCEEEEEEecCCCCChhH----HHHHHHHHH-cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q psy15217 88 ---YIKNMITGAAQMDGAILVCSAADGPMPQT----REHILLARQ-VGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (396)
Q Consensus 88 ---~~~~~~~~~~~~d~~llVvda~~g~~~qt----~e~l~~~~~-~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~ 159 (396)
+..........+|.+++|+|++.....+. ++...++.. ...|.++ ++||+|+... +..+ ++.+.++
T Consensus 222 ~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~IL-VlNKlDl~~~-~~~~----~l~~~l~ 295 (416)
T 1udx_A 222 GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLV-ALNKVDLLEE-EAVK----ALADALA 295 (416)
T ss_dssp SCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEE-EEECCTTSCH-HHHH----HHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEE-EEECCChhhH-HHHH----HHHHHHH
Confidence 11223344567999999999972111111 112222222 3678666 5699999875 3222 3444444
Q ss_pred hcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 160 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
.. ..+++++||+++ .++.+|++++.+.+.
T Consensus 296 ~~-----g~~vi~iSA~~g----------~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 296 RE-----GLAVLPVSALTG----------AGLPALKEALHALVR 324 (416)
T ss_dssp TT-----TSCEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred hc-----CCeEEEEECCCc----------cCHHHHHHHHHHHHH
Confidence 33 257999999997 589999999887664
No 193
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.29 E-value=1.3e-12 Score=133.71 Aligned_cols=164 Identities=13% Similarity=0.090 Sum_probs=92.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhh-hhcCCc-cc-------------cccccCC----------ChhH------h--
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLS-KKFGGE-AK-------------SYDQIDA----------APEE------K-- 57 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~-~~~~~~-~~-------------~~~~~d~----------~~~e------~-- 57 (396)
...+|+++|..++|||||+++|++... ..+.+. .+ ....+.. ...+ .
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 456999999999999999999997532 111000 00 0000000 0000 0
Q ss_pred --hcCceEEeeeeEEe-eCCeeEEEEecCChhh-------------hHHHHHhhh-hcCCEEEEEEecCCCCChhHH-HH
Q psy15217 58 --ARGITINTAHIEYE-TKARHYAHVDCPGHAD-------------YIKNMITGA-AQMDGAILVCSAADGPMPQTR-EH 119 (396)
Q Consensus 58 --~~g~t~~~~~~~~~-~~~~~~~iiDtpG~~~-------------~~~~~~~~~-~~~d~~llVvda~~g~~~qt~-e~ 119 (396)
..+++.+.....+. .....++|+||||... +...+..++ ..+|++++|+|++.+...+.. ..
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 11222222222222 2345799999999422 233333444 368999999999998776665 56
Q ss_pred HHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEeccccccc
Q psy15217 120 ILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALE 180 (396)
Q Consensus 120 l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~ 180 (396)
+..+...+.|.+ +|+||+|+.+....... +.. -+...+.....+++++||++|.+
T Consensus 210 l~~L~~~g~pvI-lVlNKiDlv~~~~~~~~----il~-~~~~~l~lg~~~VV~iSA~~G~G 264 (772)
T 3zvr_A 210 AKEVDPQGQRTI-GVITKLDLMDEGTDARD----VLE-NKLLPLRRGYIGVVNRSQKDIDG 264 (772)
T ss_dssp HHHHCTTCSSEE-EEEECTTSSCTTCCSHH----HHT-TCSSCCSSCEEECCCCCCEESSS
T ss_pred HHHHHhcCCCEE-EEEeCcccCCcchhhHH----HHH-HHhhhhhccCCceEEeccccccc
Confidence 666666788855 56899999875321111 111 01111111225789999999754
No 194
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.27 E-value=1.5e-11 Score=117.06 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=60.1
Q ss_pred CCeeEEEEecCChhhh-------------HHHHHhhhhcCCEEEEEEecCCC-CC-hhHHHHHHHHHHcCCCeEEEEEec
Q psy15217 73 KARHYAHVDCPGHADY-------------IKNMITGAAQMDGAILVCSAADG-PM-PQTREHILLARQVGVPYIVVFLNK 137 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~-------------~~~~~~~~~~~d~~llVvda~~g-~~-~qt~e~l~~~~~~~ip~iIvviNK 137 (396)
....++||||||..++ ...+..++..+|++++|+|+... .. ....+.+..+...+.| +|+|+||
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~-~i~V~nK 212 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDR-TFGVLTK 212 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTT-EEEEEEC
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCC-EEEEEeC
Confidence 3557999999997765 55566677899999999987542 22 2223333333344677 4556899
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccc
Q psy15217 138 ADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLAL 179 (396)
Q Consensus 138 ~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~ 179 (396)
+|+.+..... .+.++.... ....+|+++|+..+.
T Consensus 213 ~Dl~~~~~~~-------~~~~~~~~~-~~~~~~~~v~~~s~~ 246 (360)
T 3t34_A 213 IDLMDKGTDA-------VEILEGRSF-KLKYPWVGVVNRSQA 246 (360)
T ss_dssp GGGCCTTCCS-------HHHHTTSSS-CCSSCCEEECCCCHH
T ss_pred CccCCCcccH-------HHHHcCccc-cccCCeEEEEECChH
Confidence 9998652211 111221111 124678888888753
No 195
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.25 E-value=2.6e-11 Score=114.46 Aligned_cols=131 Identities=17% Similarity=0.173 Sum_probs=84.7
Q ss_pred ceEEeeeeEEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCC-----------ChhHHHHHHHHHH----
Q psy15217 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-----------MPQTREHILLARQ---- 125 (396)
Q Consensus 61 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~-----------~~qt~e~l~~~~~---- 125 (396)
.|+......+..+...+.+|||+|+++|.+.+......++++|+|+|.++-. +....+.+..+..
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 3444444556667888999999999999999999999999999999998721 2333444433332
Q ss_pred cCCCeEEEEEeccCCCCHH----------------HHHHHHHHHHHHHHhhcCC--CCCCCeEEEecccccccCCCCCCC
Q psy15217 126 VGVPYIVVFLNKADMVDDE----------------ELLELVEIEIRELLNKYEF--PGNDIPIIKGSAKLALEGDTGPLG 187 (396)
Q Consensus 126 ~~ip~iIvviNK~D~~~~~----------------~~~~~i~~~~~~~l~~~~~--~~~~~~~i~~Sa~~g~~~~~~~~~ 187 (396)
.++| +|++.||+|+.... ...+....-+...+..+.. ....++++++||+++
T Consensus 259 ~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~--------- 328 (353)
T 1cip_A 259 TDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT--------- 328 (353)
T ss_dssp TTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH---------
T ss_pred cCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc---------
Confidence 2566 66678999984211 0011222122222222221 124578999999997
Q ss_pred CCcHHHHHHHhhhhC
Q psy15217 188 EQSILSLSKALDTYI 202 (396)
Q Consensus 188 ~~~~~~Ll~~l~~~l 202 (396)
.++.++++++...+
T Consensus 329 -~nV~~vF~~v~~~i 342 (353)
T 1cip_A 329 -KNVQFVFDAVTDVI 342 (353)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHH
Confidence 58888888876543
No 196
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=99.25 E-value=1.6e-10 Score=88.42 Aligned_cols=83 Identities=30% Similarity=0.391 Sum_probs=70.4
Q ss_pred CCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccCccC
Q psy15217 209 IDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKRED 288 (396)
Q Consensus 209 ~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~ 288 (396)
...|..+.|..++..-+ |+++.|+|++|+|++|+.| |.+. ...+|+||+++++++++|.+||+|+++++|... +
T Consensus 31 ~~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~-~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~ 104 (116)
T 1xe1_A 31 KKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPS-GIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-K 104 (116)
T ss_dssp SSCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSS-CEEEEEEEEETTEEESEEETTCEEEEEEESCCC-C
T ss_pred ecCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCc-eEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-c
Confidence 34677788877555555 8899999999999999999 6331 568899999999999999999999999999877 8
Q ss_pred CCCCeEEec
Q psy15217 289 VERGQVLAK 297 (396)
Q Consensus 289 i~~G~vl~~ 297 (396)
+++|++|..
T Consensus 105 I~~GdVLyv 113 (116)
T 1xe1_A 105 VKKGDVLEI 113 (116)
T ss_dssp CCTTCEEEE
T ss_pred cCCCcEEEE
Confidence 999999863
No 197
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.23 E-value=6.1e-11 Score=114.20 Aligned_cols=163 Identities=16% Similarity=0.178 Sum_probs=80.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhh-hcCCccccccccCCChhHhhcCceEEeeeeEEeeC--CeeEEEEecCChhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSK-KFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHAD 87 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~-~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~ 87 (396)
-.++|+++|..|+|||||++.|++.... .+.+.. ..+ ....+......+.+... ...+++||+||...
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~----~~~-----~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGP----SHR-----IKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSC----C----------CCEEEEEECC------CEEEEEEECC----
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCc----ccC-----CccceeeeeEEEEEecCCcccceeeeechhhhh
Confidence 3578999999999999999999875321 110000 000 00111111111112222 23688999999876
Q ss_pred hHH------HHH--------h-----------hhhc--CCEEEEEEecC-CCCChhHHHHHHHHHHcCCCeEEEEEeccC
Q psy15217 88 YIK------NMI--------T-----------GAAQ--MDGAILVCSAA-DGPMPQTREHILLARQVGVPYIVVFLNKAD 139 (396)
Q Consensus 88 ~~~------~~~--------~-----------~~~~--~d~~llVvda~-~g~~~qt~e~l~~~~~~~ip~iIvviNK~D 139 (396)
+.. .+. . .+.. +|+++++++++ +++.+...+.+..+.. +++ +|+|+||+|
T Consensus 101 ~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~-iIlVinK~D 178 (418)
T 2qag_C 101 AVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKAD 178 (418)
T ss_dssp -------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSE-EEEEEESTT
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCc-EEEEEEccc
Confidence 532 110 0 1112 34567777776 6787777666666553 666 666789999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhh
Q psy15217 140 MVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (396)
Q Consensus 140 ~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~ 200 (396)
+.+..+ ....+.++.+.+...+ ++++.+|+.++ .+..+++..+..
T Consensus 179 ll~~~e-v~~~k~~i~~~~~~~~-----i~~~~~sa~~~----------~~v~~~~~~l~~ 223 (418)
T 2qag_C 179 TLTPEE-CQQFKKQIMKEIQEHK-----IKIYEFPETDD----------EEENKLVKKIKD 223 (418)
T ss_dssp SSCHHH-HHHHHHHHHHHHHHHT-----CCCCCCC--------------------------
T ss_pred CccHHH-HHHHHHHHHHHHHHcC-----CeEEeCCCCCC----------cCHHHHHHHHHh
Confidence 988644 3344456677776655 46788898875 345555555544
No 198
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.21 E-value=4.9e-11 Score=112.22 Aligned_cols=173 Identities=19% Similarity=0.103 Sum_probs=91.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCcccccc----------------ccCCChhHhhcCceEEee-------
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYD----------------QIDAAPEEKARGITINTA------- 66 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~----------------~~d~~~~e~~~g~t~~~~------- 66 (396)
.+...++++|.+|||||||++.|.+.....++....... .+..... ....-+...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q--~~~~~~~~~~~~~~l~ 130 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAI--DRNAFIRPSPSSGTLG 130 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGG--CTTEEEECCCCCSSHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeecc--CcccccccCccccccc
Confidence 345689999999999999999998754332221110000 0000000 000000000
Q ss_pred ---------eeEEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEec
Q psy15217 67 ---------HIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNK 137 (396)
Q Consensus 67 ---------~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK 137 (396)
...++..+..+.|+||||..+-.. .....+|.+++|+|+..+...+. +.. ....++.++ ++||
T Consensus 131 G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~---i~~-~i~~~~~iv-vlNK 202 (337)
T 2qm8_A 131 GVAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG---IKK-GIFELADMI-AVNK 202 (337)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC---------CCT-THHHHCSEE-EEEC
T ss_pred chHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH---HHH-HHhccccEE-EEEc
Confidence 001233578899999999643211 12357999999999875422110 000 001235555 5699
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCC--CCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 138 ADMVDDEELLELVEIEIRELLNKYEF--PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 138 ~D~~~~~~~~~~i~~~~~~~l~~~~~--~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+|+.+..........++...+..+.- ..+..+++++||+++ .++++|++.|.+..
T Consensus 203 ~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g----------~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 203 ADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHG----------KGLDSLWSRIEDHR 259 (337)
T ss_dssp CSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTT----------BSHHHHHHHHHHHH
T ss_pred hhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 99765322222222334443332221 012357999999997 58888888887654
No 199
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.20 E-value=9.6e-11 Score=110.95 Aligned_cols=125 Identities=15% Similarity=0.170 Sum_probs=72.5
Q ss_pred eeeEEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCC-----------ChhHHHHHHHHHH----cCCCe
Q psy15217 66 AHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-----------MPQTREHILLARQ----VGVPY 130 (396)
Q Consensus 66 ~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~-----------~~qt~e~l~~~~~----~~ip~ 130 (396)
....+..++..+.+|||+|++.|.+.+...+..++++|+|+|.++-. +......+..+.. .++|
T Consensus 192 ~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p- 270 (362)
T 1zcb_A 192 HEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS- 270 (362)
T ss_dssp EEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE-
T ss_pred EEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC-
Confidence 33445667788999999999999999999999999999999998721 1233333333332 2566
Q ss_pred EEEEEeccCCCCHH-----------------HHHHHHHHHHHHHHhhc-CCC-CCCCeEEEecccccccCCCCCCCCCcH
Q psy15217 131 IVVFLNKADMVDDE-----------------ELLELVEIEIRELLNKY-EFP-GNDIPIIKGSAKLALEGDTGPLGEQSI 191 (396)
Q Consensus 131 iIvviNK~D~~~~~-----------------~~~~~i~~~~~~~l~~~-~~~-~~~~~~i~~Sa~~g~~~~~~~~~~~~~ 191 (396)
+|++.||+|+.... ...+....-+...+..+ ... ...+.++++||+++ .++
T Consensus 271 iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~----------~nV 340 (362)
T 1zcb_A 271 IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT----------ENI 340 (362)
T ss_dssp EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH----------HHH
T ss_pred EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc----------hhH
Confidence 66678999985211 01111111121111121 111 23578999999997 588
Q ss_pred HHHHHHhhhh
Q psy15217 192 LSLSKALDTY 201 (396)
Q Consensus 192 ~~Ll~~l~~~ 201 (396)
.++++++...
T Consensus 341 ~~vF~~v~~~ 350 (362)
T 1zcb_A 341 RLVFRDVKDT 350 (362)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887654
No 200
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.18 E-value=7.6e-11 Score=109.19 Aligned_cols=153 Identities=18% Similarity=0.163 Sum_probs=75.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee--CCeeEEEEecCCh---
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET--KARHYAHVDCPGH--- 85 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~--~~~~~~iiDtpG~--- 85 (396)
-.++|+++|+.|+|||||+++|.+.......+.. .+.. ....++........++. ....+++|||||.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~-----~~g~--~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~ 89 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIS-----GAAE--KIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA 89 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC-------------------------------CEEEEC---CCEEEEEEEEC-----
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcc-----cCCc--ccCCcceEeeEEEEecCCCcccCcchhhhhhhhhh
Confidence 4589999999999999999998764111111100 0000 00001111111112221 2346899999997
Q ss_pred ----hhhHH----------HHHhhhh----------cCCEEEEEEecCC-CCChhHHHHHHHHHHcCCCeEEEEEeccCC
Q psy15217 86 ----ADYIK----------NMITGAA----------QMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADM 140 (396)
Q Consensus 86 ----~~~~~----------~~~~~~~----------~~d~~llVvda~~-g~~~qt~e~l~~~~~~~ip~iIvviNK~D~ 140 (396)
+.|.. .....++ .+++++++++++. ++.+...+.+..+. .+++ +++++||.|+
T Consensus 90 ~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~-iilV~~K~Dl 167 (301)
T 2qnr_A 90 INCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVN-IVPVIAKADT 167 (301)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSC-EEEEECCGGG
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCC-EEEEEEeCCC
Confidence 33211 1111121 2345666666544 57776655444432 2456 5567899999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEeccccc
Q psy15217 141 VDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLA 178 (396)
Q Consensus 141 ~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g 178 (396)
.+..+. ...++++.++++..+ ++++++||+++
T Consensus 168 ~~~~e~-~~~~~~~~~~~~~~~-----~~~~e~Sa~~~ 199 (301)
T 2qnr_A 168 LTLKER-ERLKKRILDEIEEHN-----IKIYHLPDAES 199 (301)
T ss_dssp SCHHHH-HHHHHHHHHHHHHTT-----CCCCCCC----
T ss_pred CCHHHH-HHHHHHHHHHHHHcC-----CeEEecCCccc
Confidence 876442 223445667777664 46899999986
No 201
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.10 E-value=8.3e-11 Score=111.44 Aligned_cols=112 Identities=19% Similarity=0.137 Sum_probs=77.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChh----
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA---- 86 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~---- 86 (396)
...+|+++|.+++|||||+|+|++...... ...+.|++.....+...+..+.|+||||..
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~----------------~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~ 134 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAA----------------EYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAK 134 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGG----------------GTCSSCCCEEEEEEEETTEEEEEEECGGGCCC--
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCccc----------------CCCCceeeeeeEEEEeCCcEEEEEeCCCccCCch
Confidence 356899999999999999999997532211 122677777777778889999999999942
Q ss_pred ---hhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHH-HHHHHc-----CCCeEEEEEeccCCC
Q psy15217 87 ---DYIKNMITGAAQMDGAILVCSAADGPMPQTREHI-LLARQV-----GVPYIVVFLNKADMV 141 (396)
Q Consensus 87 ---~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l-~~~~~~-----~ip~iIvviNK~D~~ 141 (396)
......+..++.+|++++|+|+++.... .+.+ ..+... ..|.++ ++||+|.-
T Consensus 135 ~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i-~~nK~d~~ 195 (376)
T 4a9a_A 135 DGRGRGKQVIAVARTCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDI-LIKKKEKG 195 (376)
T ss_dssp ---CHHHHHHHHHHHCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCE-EEEECSSS
T ss_pred hhhHHHHHHHHHHHhcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhh-hhhHhhhh
Confidence 2345566777899999999999863221 1111 112222 345455 57999963
No 202
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.09 E-value=4.5e-10 Score=105.78 Aligned_cols=82 Identities=17% Similarity=0.125 Sum_probs=53.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC-----------------e
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-----------------R 75 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-----------------~ 75 (396)
++|+++|.+|+|||||+++|++....... ..+.|++.....+...+ .
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~----------------~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAAN----------------YPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC----------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccC----------------CCCceECceEEEEecCCcccceeeeeecccceeee
Confidence 68999999999999999999975311100 01222222211222222 4
Q ss_pred eEEEEecCChhhhHH-------HHHhhhhcCCEEEEEEecCC
Q psy15217 76 HYAHVDCPGHADYIK-------NMITGAAQMDGAILVCSAAD 110 (396)
Q Consensus 76 ~~~iiDtpG~~~~~~-------~~~~~~~~~d~~llVvda~~ 110 (396)
.+.||||||..++.. .....++.+|++++|+|+.+
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 689999999877642 23345678999999999986
No 203
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.07 E-value=1e-09 Score=102.12 Aligned_cols=131 Identities=12% Similarity=0.134 Sum_probs=82.3
Q ss_pred CceEEeeeeEEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecC-------CCC----ChhHHHHHHHHHH---
Q psy15217 60 GITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAA-------DGP----MPQTREHILLARQ--- 125 (396)
Q Consensus 60 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~-------~g~----~~qt~e~l~~~~~--- 125 (396)
..|+......++.++..+.+|||+|+++|.+.+......++++|+|+|.+ +.. +......+..+..
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 34444455566777888999999999999999999999999999999775 211 1223333333322
Q ss_pred -cCCCeEEEEEeccCCCCHH-----------------HHHHHHHHHHHHHHhhcCC-CCCCCeEEEecccccccCCCCCC
Q psy15217 126 -VGVPYIVVFLNKADMVDDE-----------------ELLELVEIEIRELLNKYEF-PGNDIPIIKGSAKLALEGDTGPL 186 (396)
Q Consensus 126 -~~ip~iIvviNK~D~~~~~-----------------~~~~~i~~~~~~~l~~~~~-~~~~~~~i~~Sa~~g~~~~~~~~ 186 (396)
.++| ++++.||+|+.... ...+...+-+...+..... ....+.+..+||+++
T Consensus 232 ~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~-------- 302 (327)
T 3ohm_A 232 FQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT-------- 302 (327)
T ss_dssp GTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH--------
T ss_pred cCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC--------
Confidence 2566 56678999975321 0111222222222222221 223567889999987
Q ss_pred CCCcHHHHHHHhhhh
Q psy15217 187 GEQSILSLSKALDTY 201 (396)
Q Consensus 187 ~~~~~~~Ll~~l~~~ 201 (396)
.++..+++++...
T Consensus 303 --~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 303 --ENIRFVFAAVKDT 315 (327)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 5788888877654
No 204
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.07 E-value=7.9e-10 Score=103.23 Aligned_cols=83 Identities=22% Similarity=0.277 Sum_probs=59.0
Q ss_pred cCceEEeeeeEEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCC-----------CCChhHHHHHHHHHH--
Q psy15217 59 RGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD-----------GPMPQTREHILLARQ-- 125 (396)
Q Consensus 59 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~-----------g~~~qt~e~l~~~~~-- 125 (396)
+..|+......+...+..+.+|||+|+++|.+.+......++++|+|+|.++ .-+....+.+..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 3344444555666778889999999999999999999999999999999972 111233333333322
Q ss_pred --cCCCeEEEEEeccCCCC
Q psy15217 126 --VGVPYIVVFLNKADMVD 142 (396)
Q Consensus 126 --~~ip~iIvviNK~D~~~ 142 (396)
.++| ++++.||+|+..
T Consensus 225 ~~~~~p-iiLv~NK~DL~~ 242 (340)
T 4fid_A 225 FLKGAV-KLIFLNKMDLFE 242 (340)
T ss_dssp GGTTSE-EEEEEECHHHHH
T ss_pred ccCCCe-EEEEEECchhhh
Confidence 2566 666789999854
No 205
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.05 E-value=2.9e-10 Score=111.77 Aligned_cols=129 Identities=18% Similarity=0.142 Sum_probs=73.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCC---------hhHhhcCceEEeeee------------
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAA---------PEEKARGITINTAHI------------ 68 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~---------~~e~~~g~t~~~~~~------------ 68 (396)
++...|+++|+.|+||||+++.|.......+....... .|.. ......++++.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd--~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al 176 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC--ADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGV 176 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE--ECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe--ccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHH
Confidence 45678999999999999999999876554432211110 1111 011223444322100
Q ss_pred -EEeeCCeeEEEEecCChh----hhHHHHHhh--hhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 69 -EYETKARHYAHVDCPGHA----DYIKNMITG--AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 69 -~~~~~~~~~~iiDtpG~~----~~~~~~~~~--~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
.+...++.+.||||||.. .+....... +..+|.+++|+|+..+.. ..+.+...... +|..++++||+|..
T Consensus 177 ~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 177 EKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGH 253 (504)
T ss_dssp HHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSC
T ss_pred HHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCccc
Confidence 012256789999999964 333333222 237899999999998753 23333333221 45324467999987
Q ss_pred CH
Q psy15217 142 DD 143 (396)
Q Consensus 142 ~~ 143 (396)
..
T Consensus 254 ~~ 255 (504)
T 2j37_W 254 AK 255 (504)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 206
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.98 E-value=4e-09 Score=99.91 Aligned_cols=86 Identities=17% Similarity=0.198 Sum_probs=53.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeE----------Ee-------eCCe
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE----------YE-------TKAR 75 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~----------~~-------~~~~ 75 (396)
++|+++|.+|+|||||+++|++.......... .+ . ..++...... +. ....
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~--~T-i---------~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 69 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPF--AT-I---------DKNVGVVPLEDERLYALQRTFAKGERVPPVVPT 69 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCG--GG-G---------STTEEEEECCCHHHHHHHHHHCBTTBCCCEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCC--ce-e---------ccceeeEecChHHHHHHHHHhcccccccccCCc
Confidence 57999999999999999999976321100000 00 0 0011111000 00 1234
Q ss_pred eEEEEecCChhhh-------HHHHHhhhhcCCEEEEEEecCC
Q psy15217 76 HYAHVDCPGHADY-------IKNMITGAAQMDGAILVCSAAD 110 (396)
Q Consensus 76 ~~~iiDtpG~~~~-------~~~~~~~~~~~d~~llVvda~~ 110 (396)
.+.||||||..++ .......++.+|++++|+|+.+
T Consensus 70 ~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 70 HVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred eEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 6899999997653 2445566789999999999986
No 207
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.96 E-value=8.5e-09 Score=93.73 Aligned_cols=142 Identities=20% Similarity=0.266 Sum_probs=81.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEee--CCeeEEEEecCChhh--
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET--KARHYAHVDCPGHAD-- 87 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~--~~~~~~iiDtpG~~~-- 87 (396)
.++++++|+.|+|||||++.|++......+........... ....++ .++. ++. -...++++|+||...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~--~~~~~~----i~~v-~q~~~~~~~ltv~d~~~~g~~~ 74 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK--TVEIKA----IGHV-IEEGGVKMKLTVIDTPGFGDQI 74 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCC--CCSCCE----EEES-CC----CCEEEEECCCC--CCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc--ceeeee----eEEE-eecCCCcCCceEEechhhhhhc
Confidence 47899999999999999999998653322111000000000 000001 1111 111 123578999999421
Q ss_pred -----------hHH-----HHHh---h-------hhcCCEEEEEEecC-CCCChhHHHHHHHHHHcCCCeEEEEEeccCC
Q psy15217 88 -----------YIK-----NMIT---G-------AAQMDGAILVCSAA-DGPMPQTREHILLARQVGVPYIVVFLNKADM 140 (396)
Q Consensus 88 -----------~~~-----~~~~---~-------~~~~d~~llVvda~-~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~ 140 (396)
|.. .... + ...+++.++++|.. +|+.+...+.+..+... ++ +|+++||+|.
T Consensus 75 ~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~-vI~Vi~K~D~ 152 (270)
T 3sop_A 75 NNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VN-IIPVIAKADT 152 (270)
T ss_dssp BCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SE-EEEEETTGGG
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-Cc-EEEEEecccc
Confidence 111 1111 1 12368899999965 78889888888877766 55 6667899999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCC
Q psy15217 141 VDDEELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 141 ~~~~~~~~~i~~~~~~~l~~~~~ 163 (396)
.+.++. +..+..+.+.++..+.
T Consensus 153 lt~~e~-~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 153 MTLEEK-SEFKQRVRKELEVNGI 174 (270)
T ss_dssp SCHHHH-HHHHHHHHHHHHHTTC
T ss_pred CCHHHH-HHHHHHHHHHHHHcCc
Confidence 987553 3445567766666654
No 208
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.92 E-value=3.1e-09 Score=93.84 Aligned_cols=167 Identities=15% Similarity=0.165 Sum_probs=88.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccc---cCCChhHhhcCce-EEee---eeE------------E
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQ---IDAAPEEKARGIT-INTA---HIE------------Y 70 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~---~d~~~~e~~~g~t-~~~~---~~~------------~ 70 (396)
+...+|+++|+.|+|||||+++|+................ .|....+. .|.. +... ... +
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEK-HGAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHT-TTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHh-cCCcEEEecCCceEeccHHHHHHHHHHH
Confidence 3568999999999999999999987643221100000000 00000000 0111 1110 000 0
Q ss_pred eeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHH-HHHH
Q psy15217 71 ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEE-LLEL 149 (396)
Q Consensus 71 ~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~-~~~~ 149 (396)
...+..+.++|++|.-.. ....-...+..+.|+|+..+...... ....++.|.++ ++||+|+.+... ..+
T Consensus 115 ~~~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~ii-v~NK~Dl~~~~~~~~~- 185 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLI-VINKIDLADAVGADIK- 185 (226)
T ss_dssp CGGGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEE-EEECGGGHHHHTCCHH-
T ss_pred hcCCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEE-EEeccccCchhHHHHH-
Confidence 112336889999994111 00111245777888987543322111 11224678666 579999864311 111
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 150 VEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 150 i~~~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++.+.++.++. ..+++++||++| .++.+|++++.+.+
T Consensus 186 ---~~~~~~~~~~~---~~~~~~~Sa~~g----------~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 186 ---KMENDAKRINP---DAEVVLLSLKTM----------EGFDKVLEFIEKSV 222 (226)
T ss_dssp ---HHHHHHHHHCT---TSEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhCC---CCeEEEEEecCC----------CCHHHHHHHHHHHH
Confidence 33444444322 468999999997 68999999887643
No 209
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.90 E-value=9.3e-09 Score=98.68 Aligned_cols=144 Identities=17% Similarity=0.217 Sum_probs=78.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC--eeEEEEecCChhhh-
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADY- 88 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~- 88 (396)
.++++++|..|+|||||++.|++.... +.. . .....+.+.....+.+.... ..++++|+||....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~---g~~-----~----~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~ 109 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFE---GEP-----A----THTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQI 109 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-C
T ss_pred eeEEEEECCCCCCHHHHHHHHhCcccc---CCc-----C----CCCCccceEeeEEEEeecCccccccchhhhhhhhhcc
Confidence 457999999999999999999875210 000 0 00011233332222222222 26789999995321
Q ss_pred ------------HHH-----HHh--hhh-------cC--C-EEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccC
Q psy15217 89 ------------IKN-----MIT--GAA-------QM--D-GAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 139 (396)
Q Consensus 89 ------------~~~-----~~~--~~~-------~~--d-~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D 139 (396)
+.. +.. +.. .+ | ++++++|+.+++.....+.+..+. .+.| +|+++||+|
T Consensus 110 ~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~-vI~Vi~KtD 187 (427)
T 2qag_B 110 NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVN-IIPIIAKAD 187 (427)
T ss_dssp CHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSE-EEEEESCGG
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCC-EEEEEcchh
Confidence 111 111 111 12 2 366678888888888776666554 4666 666789999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEecc
Q psy15217 140 MVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 175 (396)
Q Consensus 140 ~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~Sa 175 (396)
..++++. ..+...+.+.++..+ ++++.+|.
T Consensus 188 ~Lt~~E~-~~l~~~I~~~L~~~g-----i~I~~is~ 217 (427)
T 2qag_B 188 AISKSEL-TKFKIKITSELVSNG-----VQIYQFPT 217 (427)
T ss_dssp GSCHHHH-HHHHHHHHHHHBTTB-----CCCCCCC-
T ss_pred ccchHHH-HHHHHHHHHHHHHcC-----CcEEecCC
Confidence 9987553 334445555454433 45666664
No 210
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.76 E-value=2.7e-07 Score=88.49 Aligned_cols=168 Identities=18% Similarity=0.117 Sum_probs=92.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC-CeeEEEEecCChhh---
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-ARHYAHVDCPGHAD--- 87 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~--- 87 (396)
...++++|+.|||||||++.|++...... +... .+..+..+ .+ ..++.. ...++++|+||...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~-GsI~----~~g~~~t~-~~-------~v~q~~~~~~ltv~D~~g~~~~~~ 135 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEE-GAAK----TGVVEVTM-ER-------HPYKHPNIPNVVFWDLPGIGSTNF 135 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTST-TSCC----CCC----C-CC-------EEEECSSCTTEEEEECCCGGGSSC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccC-ceEE----ECCeecce-eE-------EeccccccCCeeehHhhcccchHH
Confidence 45899999999999999999997532211 1110 11111000 11 112222 23689999999532
Q ss_pred hHHHHHh--hhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHH--------HHHHHHHHHHHH
Q psy15217 88 YIKNMIT--GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEE--------LLELVEIEIREL 157 (396)
Q Consensus 88 ~~~~~~~--~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~--------~~~~i~~~~~~~ 157 (396)
-....+. ++...|..++ +|... .+.|....+..+...+.|. ++++||.|+.--+| ..+.+.+.++++
T Consensus 136 ~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~-~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 136 PPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEF-YFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp CHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEE-EEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCe-EEEEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 1222222 3344465555 77754 4566666666666678885 45689999641000 011222233333
Q ss_pred H----hhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCCCC
Q psy15217 158 L----NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (396)
Q Consensus 158 l----~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~~~ 205 (396)
. ++.+.+ ...++++|+.... +.++++|.+.+...+|..
T Consensus 213 ~~~~l~~~g~~--~~~iiliSsh~l~--------~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 213 CVNTFRENGIA--EPPIFLLSNKNVC--------HYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHTTCS--SCCEEECCTTCTT--------STTHHHHHHHHHHHSCGG
T ss_pred HHHHHHhcCCC--CCcEEEEecCcCC--------ccCHHHHHHHHHHhCccc
Confidence 2 333321 2468999994321 136999999998888743
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.67 E-value=2.1e-08 Score=95.40 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=49.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeC----------------
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK---------------- 73 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---------------- 73 (396)
+...+|+++|.+|+|||||+++|++...... ...+.|++.....+...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~----------------~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~ 83 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAE----------------NFPFCTIDPNESRVPVPDERFDFLCQYHKPASK 83 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHHCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccc----------------CCCccccCceeEEEEECCccceeeccccCcccc
Confidence 3567999999999999999999986532110 01123333222222211
Q ss_pred -CeeEEEEecCChhhhHH-------HHHhhhhcCCEEEEEEecCC
Q psy15217 74 -ARHYAHVDCPGHADYIK-------NMITGAAQMDGAILVCSAAD 110 (396)
Q Consensus 74 -~~~~~iiDtpG~~~~~~-------~~~~~~~~~d~~llVvda~~ 110 (396)
...+.||||||..++.. .....++.+|++++|+|+.+
T Consensus 84 ~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 84 IPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 23589999999877654 45667789999999999975
No 212
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.57 E-value=8.9e-08 Score=88.51 Aligned_cols=103 Identities=25% Similarity=0.247 Sum_probs=72.7
Q ss_pred eEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCC--ChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHH
Q psy15217 76 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP--MPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIE 153 (396)
Q Consensus 76 ~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~--~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~ 153 (396)
.+.+||+ +++|...+...++.+|++++|+|+++.. +.....++..+...++|. ++|+||+|+.+.... ++
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~pi-ilv~NK~DL~~~~~v-----~~ 135 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELET-VMVINKMDLYDEDDL-----RK 135 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEE-EEEECCGGGCCHHHH-----HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCE-EEEEeHHHcCCchhH-----HH
Confidence 6899999 8888777777889999999999998743 233344455555568885 456799999875321 12
Q ss_pred HHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhh
Q psy15217 154 IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (396)
Q Consensus 154 ~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~ 199 (396)
..++++.++. . .+++++||+++ .+++++++.+.
T Consensus 136 ~~~~~~~~~~--~-~~~~~~SAktg----------~gv~~lf~~l~ 168 (301)
T 1u0l_A 136 VRELEEIYSG--L-YPIVKTSAKTG----------MGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHHTT--T-SCEEECCTTTC----------TTHHHHHHHHS
T ss_pred HHHHHHHHhh--h-CcEEEEECCCC----------cCHHHHHHHhc
Confidence 3344443331 1 57999999997 57888887753
No 213
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.54 E-value=9.7e-07 Score=85.08 Aligned_cols=128 Identities=20% Similarity=0.149 Sum_probs=72.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCCh---------hHhhcCceEEeeee-------------
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---------EEKARGITINTAHI------------- 68 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---------~e~~~g~t~~~~~~------------- 68 (396)
++..|+++|..|+||||++..|.......+...... ..|... .....|+.......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv--~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV--CSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--ECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE--eCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHH
Confidence 467899999999999999999987665543322111 112211 11122333322110
Q ss_pred EEeeCCeeEEEEecCChh----hhHHHHH--hhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCC
Q psy15217 69 EYETKARHYAHVDCPGHA----DYIKNMI--TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (396)
Q Consensus 69 ~~~~~~~~~~iiDtpG~~----~~~~~~~--~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~ 142 (396)
.+...++.+.|+||||.. .....+. ..+..+|.++||+||..|- .....+..... .++...|++||+|...
T Consensus 177 ~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~-~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKE-ATPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHH-SCTTEEEEEECCSSCS
T ss_pred HHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHh-hCCCeEEEEECCCCcc
Confidence 111235789999999932 2222222 2334689999999998752 22222322222 3343445679999976
Q ss_pred H
Q psy15217 143 D 143 (396)
Q Consensus 143 ~ 143 (396)
.
T Consensus 254 ~ 254 (443)
T 3dm5_A 254 K 254 (443)
T ss_dssp S
T ss_pred c
Confidence 5
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.53 E-value=4.9e-09 Score=99.77 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=68.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh----
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD---- 87 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~---- 87 (396)
..+++++|.+|+|||||+|+|++......... ......|+|.+.....+. ..+.++||||..+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~----------~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~ 228 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVI----------TTSYFPGTTLDMIEIPLE---SGATLYDTPGIINHHQM 228 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCC----------EEEECTTSSCEEEEEECS---TTCEEEECCSCCCCSSG
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccce----------eecCCCCeEEeeEEEEeC---CCeEEEeCCCcCcHHHH
Confidence 35799999999999999999997632211100 011123566655444332 2379999999421
Q ss_pred --h-HHHHHhhh---hcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 88 --Y-IKNMITGA---AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 88 --~-~~~~~~~~---~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
+ .......+ ...|..++++++.+..+--..+.+..+...+.| +++++||+|....
T Consensus 229 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~-~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 229 AHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRS-FVCYMANELTVHR 289 (369)
T ss_dssp GGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEE
T ss_pred HHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCce-EEEEecCCccccc
Confidence 1 11112222 568999999999542111011112223334666 5667899998754
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.50 E-value=1.1e-08 Score=97.20 Aligned_cols=119 Identities=12% Similarity=0.133 Sum_probs=65.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh----
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD---- 87 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~---- 87 (396)
..+++++|.+|+|||||+|+|++......... .......|+|.+.....+. ..+.++||||..+
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~---------~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~ 227 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENV---------ITTSHFPGTTLDLIDIPLD---EESSLYDTPGIINHHQM 227 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSC---------CEEECCC----CEEEEESS---SSCEEEECCCBCCTTSG
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccc---------eecCCCCCeecceEEEEec---CCeEEEeCCCcCcHHHH
Confidence 36899999999999999999997642210000 0011123556554443332 2389999999422
Q ss_pred --h-HHHHHhh---hhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 88 --Y-IKNMITG---AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 88 --~-~~~~~~~---~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
+ ....+.. ....+..++++++.+....-....+..+...+.| +++++||+|....
T Consensus 228 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~-~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 228 AHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRA-FTCHFSNRLTIHR 288 (368)
T ss_dssp GGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEE
T ss_pred HHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCce-EEEEecCcccccc
Confidence 1 1122222 3467899999998542111011112222334666 5667899998865
No 216
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.47 E-value=5.5e-07 Score=85.93 Aligned_cols=79 Identities=15% Similarity=0.267 Sum_probs=56.5
Q ss_pred eEEeeeeEEeeCCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCC-----------CChhHHHHHHHHHH----c
Q psy15217 62 TINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-----------PMPQTREHILLARQ----V 126 (396)
Q Consensus 62 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g-----------~~~qt~e~l~~~~~----~ 126 (396)
|+......+..++..+.+|||+|+++|.+.+......++++|+|+|.++- -+......+..+.. .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 33333445666778899999999999999999999999999999999861 11233333433332 2
Q ss_pred CCCeEEEEEeccCCC
Q psy15217 127 GVPYIVVFLNKADMV 141 (396)
Q Consensus 127 ~ip~iIvviNK~D~~ 141 (396)
++| +|++.||+|+.
T Consensus 284 ~~p-iiLvgNK~DL~ 297 (402)
T 1azs_C 284 TIS-VILFLNKQDLL 297 (402)
T ss_dssp SCC-EEEEEECHHHH
T ss_pred CCe-EEEEEEChhhh
Confidence 566 66678999984
No 217
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.45 E-value=6.5e-07 Score=86.59 Aligned_cols=130 Identities=18% Similarity=0.130 Sum_probs=71.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccc------cccCCChhH-hhcCceEEeee--------e---EE-e
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSY------DQIDAAPEE-KARGITINTAH--------I---EY-E 71 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~------~~~d~~~~e-~~~g~t~~~~~--------~---~~-~ 71 (396)
+...|+++|..|+||||+++.|.......+....... ...+..... ...|+.+.... . .+ .
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999876654432211100 001111110 11122211110 0 00 0
Q ss_pred eCCeeEEEEecCChhh----hHHHHHh--hhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCC-CeEEEEEeccCCCCH
Q psy15217 72 TKARHYAHVDCPGHAD----YIKNMIT--GAAQMDGAILVCSAADGPMPQTREHILLARQVGV-PYIVVFLNKADMVDD 143 (396)
Q Consensus 72 ~~~~~~~iiDtpG~~~----~~~~~~~--~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~i-p~iIvviNK~D~~~~ 143 (396)
..++.+.|+||||... +...+.. .+..+|.+++|+|+..|. .....+... ..++ +...+++||+|....
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~-~~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAF-KEAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHH-HTTSCSCEEEEEECSSSCST
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHH-hhcccCCeEEEEeCCCCccc
Confidence 1467899999999543 3333322 223689999999998763 222222222 2235 645567899998653
No 218
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.42 E-value=4.4e-07 Score=86.44 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=55.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCC---------------
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--------------- 74 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--------------- 74 (396)
....+++++|++|+|||||+++|++........ ..++|++.....+...+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~---------------~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~ 82 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPAN---------------YPYATIDPEEAKVAVPDERFDWLCEAYKPKSR 82 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTC---------------CSSCCCCTTEEEEEECCHHHHHHHHHHCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccC---------------CCceeecceeeeeeeCCcchhhhhhhcccccc
Confidence 345799999999999999999999743211000 00222222222222221
Q ss_pred --eeEEEEecCChhh-------hHHHHHhhhhcCCEEEEEEecCC
Q psy15217 75 --RHYAHVDCPGHAD-------YIKNMITGAAQMDGAILVCSAAD 110 (396)
Q Consensus 75 --~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~llVvda~~ 110 (396)
..+.++|+||... +.......++.+|.+++|+|+.+
T Consensus 83 v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 83 VPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp ECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3578999999432 33455666788999999999975
No 219
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.40 E-value=1.4e-06 Score=80.23 Aligned_cols=127 Identities=17% Similarity=0.105 Sum_probs=72.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCCh---h------HhhcCceEEeeee-------------E
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---E------EKARGITINTAHI-------------E 69 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~------e~~~g~t~~~~~~-------------~ 69 (396)
...++++|..|+||||++..|.......++..... ..|... . ....|+.+-.... .
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~--~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV--GADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE--ECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--ecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 55788899999999999999987665443221110 111110 0 1112333221100 0
Q ss_pred EeeCCeeEEEEecCChhh--hHHHHH------hhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 70 YETKARHYAHVDCPGHAD--YIKNMI------TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 70 ~~~~~~~~~iiDtpG~~~--~~~~~~------~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
+...++.+.|+||||... .-..+. ..+..+|.+++|+|+..+ .+..+.+..... .++...+++||+|..
T Consensus 176 ~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp HHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred HHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 112567899999999655 222111 234579999999999864 233333333332 466455568999986
Q ss_pred CH
Q psy15217 142 DD 143 (396)
Q Consensus 142 ~~ 143 (396)
..
T Consensus 253 ~~ 254 (297)
T 1j8m_F 253 AK 254 (297)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 220
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.38 E-value=8.2e-07 Score=83.64 Aligned_cols=67 Identities=19% Similarity=0.268 Sum_probs=47.9
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCC-----------CCChhHHHHHHHHHH----cCCCeEEEEEecc
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD-----------GPMPQTREHILLARQ----VGVPYIVVFLNKA 138 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~-----------g~~~qt~e~l~~~~~----~~ip~iIvviNK~ 138 (396)
...+.+|||+|+++|.+.+......++++|+|+|.++ .-+......+..+.. .++| ++++.||+
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiLvgNK~ 260 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNKF 260 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE-EEEEEECH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe-EEEEEECc
Confidence 4578899999999999999999999999999999861 112233333333332 2566 66678999
Q ss_pred CCC
Q psy15217 139 DMV 141 (396)
Q Consensus 139 D~~ 141 (396)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 974
No 221
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.33 E-value=1.4e-06 Score=83.89 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=71.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChh---------HhhcCceEEeeee-------------
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE---------EKARGITINTAHI------------- 68 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~---------e~~~g~t~~~~~~------------- 68 (396)
+...|+++|..|+||||++..|.......+....... .|.... ....|+.......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~--~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA--ADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE--ECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe--cCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 4578899999999999999999876654433221111 111110 0112332221100
Q ss_pred EEeeCCeeEEEEecCChhh------hHHHHHh--hhhcCCEEEEEEecCCCCChhHHHHHHHHH-HcCCCeEEEEEeccC
Q psy15217 69 EYETKARHYAHVDCPGHAD------YIKNMIT--GAAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKAD 139 (396)
Q Consensus 69 ~~~~~~~~~~iiDtpG~~~------~~~~~~~--~~~~~d~~llVvda~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~D 139 (396)
.+...++.+.|+||||... ++..+.. ....+|.++||+|+..|.. ..+.+.... .+++ ..|++||+|
T Consensus 174 ~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~--~gVIlTKlD 249 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASPI--GSVIITKMD 249 (433)
T ss_dssp HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCSS--EEEEEECGG
T ss_pred HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccCC--cEEEEeccc
Confidence 1112367899999999533 3333332 2235799999999987522 222222232 3333 334579999
Q ss_pred CCCH
Q psy15217 140 MVDD 143 (396)
Q Consensus 140 ~~~~ 143 (396)
....
T Consensus 250 ~~a~ 253 (433)
T 3kl4_A 250 GTAK 253 (433)
T ss_dssp GCSC
T ss_pred cccc
Confidence 8754
No 222
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.23 E-value=5.2e-06 Score=80.30 Aligned_cols=127 Identities=19% Similarity=0.137 Sum_probs=70.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhh-cCCccccccccCCCh---------hHhhcCceEEeee------------
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKK-FGGEAKSYDQIDAAP---------EEKARGITINTAH------------ 67 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~-~~~~~~~~~~~d~~~---------~e~~~g~t~~~~~------------ 67 (396)
++...|+++|+.|+||||++..|....... +...... ..|... .....|+.+-...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllv--d~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~ 175 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV--SADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAA 175 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE--ECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEE--ecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHH
Confidence 345788999999999999999998776655 3221110 011110 0112233321110
Q ss_pred -eEEeeCCeeEEEEecCChhhhHHHHH------hhhhcCCEEEEEEecCCCCChhHHHHHHHHH-HcCCCeEEEEEeccC
Q psy15217 68 -IEYETKARHYAHVDCPGHADYIKNMI------TGAAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKAD 139 (396)
Q Consensus 68 -~~~~~~~~~~~iiDtpG~~~~~~~~~------~~~~~~d~~llVvda~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~D 139 (396)
..+...++.+.|+||||...+...+. ..+..+|.+++|+|+..+. .....+.... .+++.. |++||+|
T Consensus 176 l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~~~l~i~g--vVlnK~D 251 (433)
T 2xxa_A 176 LKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFNEALPLTG--VVLTKVD 251 (433)
T ss_dssp HHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHHHHSCCCC--EEEECTT
T ss_pred HHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHhccCCCeE--EEEecCC
Confidence 01112467899999999543311111 1234789999999998762 2222222222 234442 3579999
Q ss_pred CCC
Q psy15217 140 MVD 142 (396)
Q Consensus 140 ~~~ 142 (396)
...
T Consensus 252 ~~~ 254 (433)
T 2xxa_A 252 GDA 254 (433)
T ss_dssp SSS
T ss_pred CCc
Confidence 754
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.18 E-value=4e-06 Score=76.53 Aligned_cols=100 Identities=17% Similarity=0.125 Sum_probs=62.7
Q ss_pred EEecCChh-hhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHH-cCCCeEEEEEeccCCCCHHHHHHHHHHHHHH
Q psy15217 79 HVDCPGHA-DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ-VGVPYIVVFLNKADMVDDEELLELVEIEIRE 156 (396)
Q Consensus 79 iiDtpG~~-~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~-~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~ 156 (396)
+-+.|||. +..+.+...+..+|+++.|+||.+.......+ +... .+.|.+ +++||+|+.+.+.. +...+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~---l~~~l~~kp~i-lVlNK~DL~~~~~~-----~~~~~ 73 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPM---IEDILKNKPRI-MLLNKADKADAAVT-----QQWKE 73 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHH---HHHHCSSSCEE-EEEECGGGSCHHHH-----HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHH---HHHHHCCCCEE-EEEECcccCCHHHH-----HHHHH
Confidence 44679987 67788888999999999999999855432111 1122 356655 56899999985321 12344
Q ss_pred HHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 157 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
+++..+ .+++++||.++ .++.+|++.+.+.+
T Consensus 74 ~~~~~g-----~~~i~iSA~~~----------~gi~~L~~~i~~~l 104 (282)
T 1puj_A 74 HFENQG-----IRSLSINSVNG----------QGLNQIVPASKEIL 104 (282)
T ss_dssp HHHTTT-----CCEEECCTTTC----------TTGGGHHHHHHHHH
T ss_pred HHHhcC-----CcEEEEECCCc----------ccHHHHHHHHHHHH
Confidence 454333 47999999986 46777777665544
No 224
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.15 E-value=5.1e-06 Score=71.23 Aligned_cols=105 Identities=12% Similarity=0.050 Sum_probs=62.8
Q ss_pred cCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHH----HHH-H---cCCCeEEEEEecc-CCCCHHHHHHHHHH
Q psy15217 82 CPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHIL----LAR-Q---VGVPYIVVFLNKA-DMVDDEELLELVEI 152 (396)
Q Consensus 82 tpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~----~~~-~---~~ip~iIvviNK~-D~~~~~~~~~~i~~ 152 (396)
..|+.++...+..++..+|++|+|||+++......++-+. ++. . .++|.+| ..||. |+..+-.. .
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLV-lANKqqDlp~Ams~-~---- 182 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV-LSCISQGDVKRMPC-F---- 182 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEE-EEEESSTTSCBCCH-H----
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEE-EeCCCcCccCCCCH-H----
Confidence 3489999999999999999999999998753323544332 111 1 3678555 56995 67654111 1
Q ss_pred HHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 153 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
++.+.|....+. ....+.++||.+| +|+.+-++||.+.+.
T Consensus 183 EI~e~L~L~~l~-R~W~Iq~csA~TG----------eGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 183 YLAHELHLNLLN-HPWLVQDTEAETL----------TGFLNGIEWILEEVE 222 (227)
T ss_dssp HHHHHTTGGGGC-SCEEEEEEETTTC----------TTHHHHHHHHTTTTT
T ss_pred HHHHHcCCcCCC-CCEEEEEeECCCC----------cCHHHHHHHHHHHHH
Confidence 222332221121 3567999999998 699999999987654
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.12 E-value=1.5e-06 Score=86.93 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=58.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeE--E-eeCCeeEEEEecCChh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE--Y-ETKARHYAHVDCPGHA 86 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~--~-~~~~~~~~iiDtpG~~ 86 (396)
.+...|+++|.+++|||||+|+|++..... . .... .++.|.....+. + ...+..+.|+||||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~--------~~~t----t~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-S--------LGST----VQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-C--------CCCS----SSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCcc-c--------cCCC----CCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 467899999999999999999998642110 0 0000 012221111111 1 1246789999999954
Q ss_pred hhHH------HHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHH
Q psy15217 87 DYIK------NMITGAAQMDGAILVCSAADGPMPQTREHILLARQ 125 (396)
Q Consensus 87 ~~~~------~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~ 125 (396)
+..+ ..+..+...-..++|+|+..++..+..+++.++..
T Consensus 103 ~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 103 DVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp CGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHT
T ss_pred cccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHH
Confidence 3211 11111121112267888888888888777666544
No 226
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.06 E-value=3.1e-06 Score=77.21 Aligned_cols=58 Identities=26% Similarity=0.319 Sum_probs=35.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCCh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~ 85 (396)
...++++++|.+|+|||||+|+|++..... .....|+|.+.....+ +..+.++||||.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~---------------~~~~~g~T~~~~~~~~---~~~~~l~DtpG~ 175 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAK---------------TGDRPGITTSQQWVKV---GKELELLDTPGI 175 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------------------CCEEE---TTTEEEEECCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceee---------------cCCCCCeeeeeEEEEe---CCCEEEEECcCc
Confidence 456899999999999999999998642111 1112255655543322 346899999994
No 227
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.05 E-value=1.2e-05 Score=76.15 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=66.5
Q ss_pred ChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHH--cCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 84 G~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~--~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
..++|.+........+|++++|+|+.+.. . .....+.. .+.| +++|+||+|+.+.+...+.+.+.+..+++..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~--~~~~~l~~~~~~~p-~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--G--SWLPGLHRFVGNNK-VLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--H--HCCTTHHHHSSSSC-EEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--c--cHHHHHHHHhCCCc-EEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 45788888777777889999999998621 1 11111111 2667 5556899999765322233333455556666
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++. ..+++.+||++| .++.+|++.+.+..
T Consensus 130 g~~--~~~v~~iSA~~g----------~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 130 GLK--PEDVFLISAAKG----------QGIAELADAIEYYR 158 (368)
T ss_dssp TCC--CSEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred CCC--cccEEEEeCCCC----------cCHHHHHhhhhhhc
Confidence 662 247999999997 58889998887643
No 228
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.05 E-value=6.7e-06 Score=78.03 Aligned_cols=109 Identities=14% Similarity=0.087 Sum_probs=67.1
Q ss_pred EEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy15217 78 AHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIREL 157 (396)
Q Consensus 78 ~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~ 157 (396)
.-+|+| +++|.+........++++++|+|+.+.......+....+ .+.| +++|+||+|+.+.+...+.+.+.+..+
T Consensus 52 ~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~p-iilV~NK~DLl~~~~~~~~~~~~l~~~ 127 (369)
T 3ec1_A 52 QDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNP-ILLVGNKADLLPRSVKYPKLLRWMRRM 127 (369)
T ss_dssp --------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSC-EEEEEECGGGSCTTCCHHHHHHHHHHH
T ss_pred cCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCC-EEEEEEChhcCCCccCHHHHHHHHHHH
Confidence 344554 788888877777889999999999874321111111111 2566 555689999987532223344445566
Q ss_pred HhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhC
Q psy15217 158 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (396)
Q Consensus 158 l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l 202 (396)
++..++. ..+++++||++| .++.+|++.+.+..
T Consensus 128 ~~~~g~~--~~~v~~iSA~~g----------~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 128 AEELGLC--PVDVCLVSAAKG----------IGMAKVMEAINRYR 160 (369)
T ss_dssp HHTTTCC--CSEEEECBTTTT----------BTHHHHHHHHHHHH
T ss_pred HHHcCCC--cccEEEEECCCC----------CCHHHHHHHHHhhc
Confidence 6766662 247999999997 57888888887643
No 229
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=98.04 E-value=5.5e-06 Score=61.60 Aligned_cols=80 Identities=18% Similarity=0.313 Sum_probs=68.9
Q ss_pred EEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCC-ceeEEEEEEEecceeeCeeecCCeEEEEecccCccCCCCCe
Q psy15217 215 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD-TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQ 293 (396)
Q Consensus 215 ~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~-~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~ 293 (396)
+-|.++|+++..|+++..+|.+|.++.+..+++.-.+. -...++.|+.++...+.++.+|.-+++.+.+. +|++.||
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~--~dik~GD 86 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNF--NDIKEGD 86 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTC--SSCSSCS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCc--CCCCCCC
Confidence 45778899999999999999999999999999985332 14567889999999999999999999999854 5999999
Q ss_pred EEe
Q psy15217 294 VLA 296 (396)
Q Consensus 294 vl~ 296 (396)
+|-
T Consensus 87 ~Ie 89 (99)
T 1d1n_A 87 VIE 89 (99)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 230
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.04 E-value=2.1e-05 Score=72.53 Aligned_cols=96 Identities=18% Similarity=0.141 Sum_probs=62.8
Q ss_pred hhhhHHHHHhhhhcCCEEEEEEecCCCC-C-hhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15217 85 HADYIKNMITGAAQMDGAILVCSAADGP-M-PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (396)
Q Consensus 85 ~~~~~~~~~~~~~~~d~~llVvda~~g~-~-~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~ 162 (396)
+++|.......++.+|.+++|+|+++.. . ......+..+...++|.++ |+||+|+.+..+. +.. .++.++++..+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~il-V~NK~DL~~~~~v-~~~-~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVI-VFNKIDLLNEEEK-KEL-ERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEE-EECCGGGCCHHHH-HHH-HHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEE-EEEcccCCCcccc-HHH-HHHHHHHHHCC
Confidence 4444433335678999999999998753 2 2334555666667888655 6799999876321 111 23445555554
Q ss_pred CCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHh
Q psy15217 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKAL 198 (396)
Q Consensus 163 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l 198 (396)
.+++++||+++ .++++|++.+
T Consensus 143 -----~~~~~~SA~~g----------~gi~~L~~~l 163 (302)
T 2yv5_A 143 -----YDVLKVSAKTG----------EGIDELVDYL 163 (302)
T ss_dssp -----CEEEECCTTTC----------TTHHHHHHHT
T ss_pred -----CeEEEEECCCC----------CCHHHHHhhc
Confidence 47999999997 4666766654
No 231
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.04 E-value=1.9e-05 Score=76.86 Aligned_cols=126 Identities=16% Similarity=0.158 Sum_probs=68.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChh---------HhhcCceEEeeeeE------------
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE---------EKARGITINTAHIE------------ 69 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~---------e~~~g~t~~~~~~~------------ 69 (396)
+.-.++++|..|||||||++.|.+.....++.-.... .|.... ...+++.+-.....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g--~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA--GDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC--CCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEec--CcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 3457899999999999999999876544332211111 121110 01234433221100
Q ss_pred -EeeCCeeEEEEecCChhh----hHHH---HHhhhh-----cCCEEEEEEecCCCCChhHHHHHHHHH-HcCCCeEEEEE
Q psy15217 70 -YETKARHYAHVDCPGHAD----YIKN---MITGAA-----QMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFL 135 (396)
Q Consensus 70 -~~~~~~~~~iiDtpG~~~----~~~~---~~~~~~-----~~d~~llVvda~~g~~~qt~e~l~~~~-~~~ip~iIvvi 135 (396)
....+..+.|+||+|... ++.. ....++ .++-.+||+|+..|- .....+.... .+++.. + ++
T Consensus 370 ~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~~itg-v-Il 445 (503)
T 2yhs_A 370 AAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAVGLTG-I-TL 445 (503)
T ss_dssp HHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHTCCSE-E-EE
T ss_pred HHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhcCCCE-E-EE
Confidence 012456789999999522 2222 111111 367899999998762 2223333333 457774 3 46
Q ss_pred eccCCCC
Q psy15217 136 NKADMVD 142 (396)
Q Consensus 136 NK~D~~~ 142 (396)
||+|...
T Consensus 446 TKLD~ta 452 (503)
T 2yhs_A 446 TKLDGTA 452 (503)
T ss_dssp ECGGGCS
T ss_pred EcCCCcc
Confidence 9999754
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.02 E-value=3.9e-05 Score=71.36 Aligned_cols=129 Identities=18% Similarity=0.145 Sum_probs=71.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCC-ChhH------hhcCceEEeeeeEE------------
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDA-APEE------KARGITINTAHIEY------------ 70 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~-~~~e------~~~g~t~~~~~~~~------------ 70 (396)
++.-.++++|..|+|||||++.|.+.....++........+.+ ...+ +..|+..-......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 3457899999999999999999987655443322111111111 1111 12343222111000
Q ss_pred -eeCCeeEEEEecCChh----hhHHHHHh--hhhcCCEEEEEEecCCCCChhHHHHHHHHH-HcCCCeEEEEEeccCCCC
Q psy15217 71 -ETKARHYAHVDCPGHA----DYIKNMIT--GAAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKADMVD 142 (396)
Q Consensus 71 -~~~~~~~~iiDtpG~~----~~~~~~~~--~~~~~d~~llVvda~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~D~~~ 142 (396)
...+..+.++||+|.. .++..... .+..+|-.++++|+..+. +..+.+.... ..++. .+ ++||+|...
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it-~i-ilTKlD~~a 282 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKID-GI-ILTKLDADA 282 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCC-EE-EEECGGGCS
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCC-EE-EEeCcCCcc
Confidence 0124567889999952 23333322 123589999999998762 3344443333 45666 44 469999754
No 233
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.98 E-value=2.7e-05 Score=59.94 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=69.2
Q ss_pred eEEEEEEEeeCCCce---EEEEEEEeeEEecCCEEEEeecCC-ceeEEEEEEEecceeeCeeecCCeEEEEecccCcc-C
Q psy15217 214 LLPVEDVFSISGRGT---VVTGRVERGIVRVGEELEIIGIKD-TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKRE-D 288 (396)
Q Consensus 214 ~~~i~~~~~~~~~G~---v~~g~v~~G~l~~g~~v~~~p~~~-~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~~~-~ 288 (396)
.+-|.++|+++..|+ ++..+|.+|.++.+..+++.-.+. -..-++.|+.++...+.++.+|.-|++.|. +.+ |
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~--~fniD 89 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLD--EEKVE 89 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECS--CTTSC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEc--cCCCC
Confidence 467889999998888 999999999999999999985332 134577899999999999999999999997 446 8
Q ss_pred CCCCeEEec
Q psy15217 289 VERGQVLAK 297 (396)
Q Consensus 289 i~~G~vl~~ 297 (396)
++.||+|-.
T Consensus 90 ik~GDiIE~ 98 (120)
T 2crv_A 90 FKPGDQVIC 98 (120)
T ss_dssp CCTTEEEEE
T ss_pred CCCCCEEEE
Confidence 999999853
No 234
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.94 E-value=2.9e-05 Score=72.06 Aligned_cols=128 Identities=15% Similarity=0.074 Sum_probs=67.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChh-------Hh-----hcCceEE-eeee--------
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE-------EK-----ARGITIN-TAHI-------- 68 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~-------e~-----~~g~t~~-~~~~-------- 68 (396)
++.-.|+++|..|+||||++..|.......++..... ..|.... +. ..++.+- ....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli--d~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~ 180 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA--AADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVV 180 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--eCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHH
Confidence 3455789999999999999999987655443221111 1122110 11 1232222 1000
Q ss_pred --EE---eeCCeeEEEEecCChhhhHHHHHh-------h-----hhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeE
Q psy15217 69 --EY---ETKARHYAHVDCPGHADYIKNMIT-------G-----AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131 (396)
Q Consensus 69 --~~---~~~~~~~~iiDtpG~~~~~~~~~~-------~-----~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~i 131 (396)
.+ ...++.+.|+||||........+. . ...+|.+++|+|+..+ ..+.+.+..... ..+..
T Consensus 181 ~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~-~~~i~ 257 (320)
T 1zu4_A 181 FDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSK-VADVS 257 (320)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTT-TSCCC
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhh-cCCCc
Confidence 00 124678999999995443222111 1 1247999999999864 233333322211 22322
Q ss_pred EEEEeccCCCC
Q psy15217 132 VVFLNKADMVD 142 (396)
Q Consensus 132 IvviNK~D~~~ 142 (396)
=+++||+|...
T Consensus 258 GvVltk~d~~~ 268 (320)
T 1zu4_A 258 GIILTKMDSTS 268 (320)
T ss_dssp EEEEECGGGCS
T ss_pred EEEEeCCCCCC
Confidence 23579999754
No 235
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.81 E-value=3.6e-05 Score=69.33 Aligned_cols=105 Identities=12% Similarity=0.037 Sum_probs=67.6
Q ss_pred cCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHH----HHH---HH-cCCCeEEEEEec-cCCCCHHHHHHHHHH
Q psy15217 82 CPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI----LLA---RQ-VGVPYIVVFLNK-ADMVDDEELLELVEI 152 (396)
Q Consensus 82 tpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l----~~~---~~-~~ip~iIvviNK-~D~~~~~~~~~~i~~ 152 (396)
..|++++...+..+...+|++|+|||+++...-..++-+ .++ .. .++|.+| ..|| .|+..+-.. .
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLV-fANKkQDlp~Ams~-~---- 267 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV-LSCISQGDVKRMPC-F---- 267 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEE-EEEESSTTSCBCCH-H----
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEE-EeCCcccccCCCCH-H----
Confidence 468899999999999999999999999874432233322 222 11 4788555 4597 588654111 1
Q ss_pred HHHHHHhhcCCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhhCC
Q psy15217 153 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (396)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~l~ 203 (396)
++.+.|....+. ....+.++||.+| +|+.+-+++|.+.+.
T Consensus 268 EI~e~L~L~~l~-r~W~Iq~csA~tG----------eGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 268 YLAHELHLNLLN-HPWLVQDTEAETL----------TGFLNGIEWILEEVE 307 (312)
T ss_dssp HHHHHTTGGGGC-SCEEEEEEETTTC----------TTHHHHHHHHHHHSC
T ss_pred HHHHHcCCccCC-CcEEEEecccCCC----------cCHHHHHHHHHHHHH
Confidence 222332221122 3567999999998 699999999988764
No 236
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.79 E-value=0.0001 Score=67.79 Aligned_cols=128 Identities=18% Similarity=0.101 Sum_probs=66.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCCh-hH------hhcCceEEeeeeE----------E---
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP-EE------KARGITINTAHIE----------Y--- 70 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~-~e------~~~g~t~~~~~~~----------~--- 70 (396)
+.-.++++|+.|||||||++.|.+.....++........+.+.. .+ +..++..-..... +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998765443322111110011100 00 1123322111000 0
Q ss_pred eeCCeeEEEEecCChhh----hHHHHH---hh-----hhcCCEEEEEEecCCCCChhHHHHHHHH-HHcCCCeEEEEEec
Q psy15217 71 ETKARHYAHVDCPGHAD----YIKNMI---TG-----AAQMDGAILVCSAADGPMPQTREHILLA-RQVGVPYIVVFLNK 137 (396)
Q Consensus 71 ~~~~~~~~iiDtpG~~~----~~~~~~---~~-----~~~~d~~llVvda~~g~~~qt~e~l~~~-~~~~ip~iIvviNK 137 (396)
...+..+.++||+|... ++.... .. ...++.+++++|+..+.. ..+.+... ...++. ++ ++||
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~t-~i-ivTh 256 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGLT-GV-IVTK 256 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCCS-EE-EEEC
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCCc-EE-EEEC
Confidence 01234567999999432 222111 11 124788999999987642 33333333 345766 44 4699
Q ss_pred cCCCC
Q psy15217 138 ADMVD 142 (396)
Q Consensus 138 ~D~~~ 142 (396)
.|...
T Consensus 257 ~d~~a 261 (304)
T 1rj9_A 257 LDGTA 261 (304)
T ss_dssp TTSSC
T ss_pred Ccccc
Confidence 99764
No 237
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.78 E-value=5.4e-05 Score=72.75 Aligned_cols=126 Identities=21% Similarity=0.147 Sum_probs=68.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCCh---hH------hhcCceEEeeee----------E--
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---EE------KARGITINTAHI----------E-- 69 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~e------~~~g~t~~~~~~----------~-- 69 (396)
+.-.++++|..|+||||++..|.......++...... .|... .+ ...|+.+-.... .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd--~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~ 174 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA--ADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE--CCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee--ccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHH
Confidence 3456888999999999999999876654432211110 11111 11 112333221100 0
Q ss_pred -EeeCCeeEEEEecCChhh----hHHHHH--hhhhcCCEEEEEEecCCCCChhHHHHHHHHH-HcCCCeEEEEEeccCCC
Q psy15217 70 -YETKARHYAHVDCPGHAD----YIKNMI--TGAAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKADMV 141 (396)
Q Consensus 70 -~~~~~~~~~iiDtpG~~~----~~~~~~--~~~~~~d~~llVvda~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~D~~ 141 (396)
+...++.+.|+||||... .+..+. ..+..+|.++||+|+..+ ......+.... .+++. -|++||+|..
T Consensus 175 ~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~~l~i~--GVIlTKlD~~ 250 (425)
T 2ffh_A 175 KARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVT--GLVLTKLDGD 250 (425)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHTCCC--EEEEESGGGC
T ss_pred HHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHhcCCce--EEEEeCcCCc
Confidence 112466799999999532 222221 223368999999999865 22222222222 23433 3357999975
Q ss_pred C
Q psy15217 142 D 142 (396)
Q Consensus 142 ~ 142 (396)
.
T Consensus 251 ~ 251 (425)
T 2ffh_A 251 A 251 (425)
T ss_dssp S
T ss_pred c
Confidence 4
No 238
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.78 E-value=0.00015 Score=73.32 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998764
No 239
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.76 E-value=1.8e-05 Score=71.28 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=58.7
Q ss_pred CChhhh-HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q psy15217 83 PGHADY-IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (396)
Q Consensus 83 pG~~~~-~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~ 161 (396)
|||... .+.+...+..+|.++.|+||.........+ +.++ +.|.++ ++||+|+.+.+.. +...++++..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-l~ll---~k~~ii-vlNK~DL~~~~~~-----~~~~~~~~~~ 74 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-VDFS---RKETII-LLNKVDIADEKTT-----KKWVEFFKKQ 74 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-SCCT---TSEEEE-EEECGGGSCHHHH-----HHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-HHhc---CCCcEE-EEECccCCCHHHH-----HHHHHHHHHc
Confidence 888654 467778889999999999999754432111 1111 777555 6899999986321 1233445444
Q ss_pred CCCCCCCeEEEecccccccCCCCCCCCCcHHHHHHHhhhh
Q psy15217 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (396)
Q Consensus 162 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~Ll~~l~~~ 201 (396)
+ .++ ++||.++ .++.+|++.+...
T Consensus 75 g-----~~v-~iSa~~~----------~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 75 G-----KRV-ITTHKGE----------PRKVLLKKLSFDR 98 (262)
T ss_dssp T-----CCE-EECCTTS----------CHHHHHHHHCCCT
T ss_pred C-----CeE-EEECCCC----------cCHHHHHHHHHHh
Confidence 4 357 9999987 5788888877553
No 240
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.74 E-value=9.3e-05 Score=68.13 Aligned_cols=127 Identities=19% Similarity=0.195 Sum_probs=66.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChh---------HhhcCceEEeee-------e---EE-
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE---------EKARGITINTAH-------I---EY- 70 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~---------e~~~g~t~~~~~-------~---~~- 70 (396)
+.-.|+++|..|+||||++..|.......++...... .|.... -...|+..-... . .+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~--~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA--ADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE--ECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc--cccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3457899999999999999999876654432211100 111100 011233321100 0 00
Q ss_pred --eeCCeeEEEEecCChhhhHHH-------HHhhh-----hcCCEEEEEEecCCCCChhHHHHHHH-HHHcCCCeEEEEE
Q psy15217 71 --ETKARHYAHVDCPGHADYIKN-------MITGA-----AQMDGAILVCSAADGPMPQTREHILL-ARQVGVPYIVVFL 135 (396)
Q Consensus 71 --~~~~~~~~iiDtpG~~~~~~~-------~~~~~-----~~~d~~llVvda~~g~~~qt~e~l~~-~~~~~ip~iIvvi 135 (396)
......+.++||||....... ....+ ..+|.+++|+|+..+ ....+.+.. ....++.-+ ++
T Consensus 181 ~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~gv--Vl 256 (306)
T 1vma_A 181 HALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVTGI--IL 256 (306)
T ss_dssp HHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCCEE--EE
T ss_pred HHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCCEE--EE
Confidence 124567999999995222211 11111 247899999999743 122222222 223555533 46
Q ss_pred eccCCCCH
Q psy15217 136 NKADMVDD 143 (396)
Q Consensus 136 NK~D~~~~ 143 (396)
||+|....
T Consensus 257 Tk~D~~~~ 264 (306)
T 1vma_A 257 TKLDGTAK 264 (306)
T ss_dssp ECGGGCSC
T ss_pred eCCCCccc
Confidence 99997643
No 241
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.74 E-value=1.1e-05 Score=72.68 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=34.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~ 87 (396)
++++++|.+|+|||||+++|++......+ ...|+|...... .. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~---------------~~~g~T~~~~~~--~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG---------------AQPGITKGIQWF--SL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-------------------------CCSCEE--EC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC---------------CCCCCccceEEE--Ee-CCCEEEEECCCccc
Confidence 69999999999999999999864321110 112444433222 21 34689999999543
No 242
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.67 E-value=0.00026 Score=60.78 Aligned_cols=123 Identities=16% Similarity=0.078 Sum_probs=71.5
Q ss_pred EEEEE-eCCCCChHHHHHHHHhhhhhhcCCccccccccCCChh------HhhcCceEEeee-eE----E--eeCCeeEEE
Q psy15217 14 NVGTI-GHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE------EKARGITINTAH-IE----Y--ETKARHYAH 79 (396)
Q Consensus 14 ~i~i~-G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~------e~~~g~t~~~~~-~~----~--~~~~~~~~i 79 (396)
.|++. +..|+||||+.-.|.......+..... .-+|.... ....+..+-... .. + -...+.+.+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vll--iD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~vi 80 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAV--VDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAI 80 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEE--EECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEE--EECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEE
Confidence 35566 567799999999997766554322110 00111100 000111110000 00 0 013578999
Q ss_pred EecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcC-----CCeEEEEEeccCCCC
Q psy15217 80 VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVG-----VPYIVVFLNKADMVD 142 (396)
Q Consensus 80 iDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~-----ip~iIvviNK~D~~~ 142 (396)
+|+|+... ..+...+..+|.+++++.++... ..+...+..+...+ ++. .+++|++|...
T Consensus 81 iD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~~~~ 144 (206)
T 4dzz_A 81 VDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEA-RFLITRKIEMA 144 (206)
T ss_dssp EECCSSSS--HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEE-EEEECSBCTTE
T ss_pred EECCCCCC--HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcE-EEEEeccCCCc
Confidence 99998653 34455566799999999998876 77777777777653 453 55789999543
No 243
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.64 E-value=0.00025 Score=69.60 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=79.3
Q ss_pred HHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCCCceEEEEEEEeeEEecCCEEEEeecCC-ceeEEEEEEEecceeeC
Q psy15217 191 ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD-TVKTTCTGVEMFRKLLD 269 (396)
Q Consensus 191 ~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~-~~~~~v~si~~~~~~~~ 269 (396)
++++.+++...++ |.....---.+-|.++|+.+..|.++..+|..|.++.|..+.+...+. -...++.|+++++++++
T Consensus 388 ~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~ 466 (501)
T 1zo1_I 388 IDEVKAAMSGMLS-PELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVN 466 (501)
T ss_dssp HHHTHHHHTTTSS-TTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEES
T ss_pred HHHHHHHHHhhcC-ceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCcccc
Confidence 3444555555444 333233333456778999888899999999999999999999864322 14678999999999999
Q ss_pred eeecCCeEEEEecccCccCCCCCeEEec
Q psy15217 270 QGQAGDNIGLLLRGTKREDVERGQVLAK 297 (396)
Q Consensus 270 ~a~~G~~v~l~l~~~~~~~i~~G~vl~~ 297 (396)
++..|+-|++.+.+. .+++.||+|-.
T Consensus 467 e~~~g~ecgi~~~~~--~~~~~gd~~~~ 492 (501)
T 1zo1_I 467 EVRNGMECGIGVKNY--NDVRTGDVIEV 492 (501)
T ss_dssp EEETTCCEEEEBCCC--TTCCTTCEEEE
T ss_pred EECCCCEEEEEEcCc--CCCCCCCEEEE
Confidence 999999999999854 58999999853
No 244
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.54 E-value=7.3e-05 Score=68.59 Aligned_cols=128 Identities=18% Similarity=0.075 Sum_probs=65.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhh-hcCCccccccccCCC---hhH------hhcCceEEeee----e--EE-eeC
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSK-KFGGEAKSYDQIDAA---PEE------KARGITINTAH----I--EY-ETK 73 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~-~~~~~~~~~~~~d~~---~~e------~~~g~t~~~~~----~--~~-~~~ 73 (396)
+.-.++++|+.|+||||++..|...... .+...... ..|.. ..| ...|+...... . .+ ...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv--~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFI--TTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFS 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEE--ECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEE--ecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhc
Confidence 3458999999999999999999876553 33111100 01110 000 00122110000 0 00 124
Q ss_pred CeeEEEEecCChhhh----HHHHHhhhh--cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 74 ARHYAHVDCPGHADY----IKNMITGAA--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~----~~~~~~~~~--~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
+..+.|+||||.... +..+...+. .+|..++|+|+..+.. ...+.......+++.. +++||+|....
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g--iVltk~D~~~~ 254 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ--YIFTKIDETTS 254 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE--EEEECTTTCSC
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE--EEEeCCCcccc
Confidence 567999999995433 222222222 3678899999986421 1122122222234443 34699997653
No 245
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.42 E-value=0.00058 Score=62.54 Aligned_cols=129 Identities=20% Similarity=0.129 Sum_probs=66.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCC------hh-HhhcCceEEeee-------e------EE
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAA------PE-EKARGITINTAH-------I------EY 70 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~------~~-e~~~g~t~~~~~-------~------~~ 70 (396)
+.-.++++|..|+||||++..|.......++........+.+. .. ....+...-... . ..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3457888999999999999999876554332211000000000 00 011233222110 0 01
Q ss_pred eeCCeeEEEEecCChhh----hHHHHHhh--hhcCCEEEEEEecCCCCChhHHHHHHHHH-HcCCCeEEEEEeccCCCCH
Q psy15217 71 ETKARHYAHVDCPGHAD----YIKNMITG--AAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 71 ~~~~~~~~iiDtpG~~~----~~~~~~~~--~~~~d~~llVvda~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~D~~~~ 143 (396)
....+.+.|+||||... .+..+... ...+|.+++|+|+..+ ....+.+.... .+++. - +++||+|....
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~~~~i~-g-ivlnk~d~~~~ 252 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVT-G-LVLTKLDGDAR 252 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCCC-E-EEEECGGGCSS
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhhcCCCC-E-EEEECCCCCcc
Confidence 11457899999998432 12222211 2258999999999854 23333333222 23433 2 35799997643
No 246
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.40 E-value=0.00085 Score=61.60 Aligned_cols=129 Identities=17% Similarity=0.121 Sum_probs=67.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCCh-----hH--hhcCceEEeeeeE-E------------
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP-----EE--KARGITINTAHIE-Y------------ 70 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~-----~e--~~~g~t~~~~~~~-~------------ 70 (396)
+.-.++++|+.|||||||++.|.+.....++.-........+.. .. ...++..-..... .
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 34578999999999999999998876543322111111111111 01 1124433221111 0
Q ss_pred -eeCCeeEEEEecCChhhh----HHHH---Hhh-----hhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEec
Q psy15217 71 -ETKARHYAHVDCPGHADY----IKNM---ITG-----AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNK 137 (396)
Q Consensus 71 -~~~~~~~~iiDtpG~~~~----~~~~---~~~-----~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK 137 (396)
...+....++|+.|...+ ..+. ... ...++-.+||+|++.|...... ...+....++. ++ ++||
T Consensus 179 ~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-~~~~~~~~g~t-~i-iiTh 255 (302)
T 3b9q_A 179 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGIT-GL-ILTK 255 (302)
T ss_dssp HHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCCC-EE-EEEC
T ss_pred HHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-HHHHHHhcCCC-EE-EEeC
Confidence 012344678999995332 2111 111 1246778999998776654432 11223345776 44 4699
Q ss_pred cCCCC
Q psy15217 138 ADMVD 142 (396)
Q Consensus 138 ~D~~~ 142 (396)
+|...
T Consensus 256 lD~~~ 260 (302)
T 3b9q_A 256 LDGSA 260 (302)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 99764
No 247
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.34 E-value=0.00049 Score=66.43 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.2
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
..+-.-|+|+|..++|||||+|+|++..
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~ 91 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYM 91 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhc
Confidence 3466789999999999999999999763
No 248
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.33 E-value=0.00024 Score=65.22 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=51.4
Q ss_pred hhhcCCEEEEEEecCCCCChhH--HHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15217 95 GAAQMDGAILVCSAADGPMPQT--REHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 172 (396)
Q Consensus 95 ~~~~~d~~llVvda~~g~~~qt--~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~ 172 (396)
.+..+|.+++|+|+..+..... ...+..+...++|.+| ++||+|+.+..+..+.+ .++.+.++..++ ++++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vi-vlnK~DL~~~~~~~~~~-~~~~~~y~~~g~-----~v~~ 155 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPII-CITKMDLIEDQDTEDTI-QAYAEDYRNIGY-----DVYL 155 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEE-EEECGGGCCCHHHHHHH-HHHHHHHHHHTC-----CEEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEE-EEECCccCchhhhHHHH-HHHHHHHHhCCC-----eEEE
Confidence 4678999999999997555432 3334444557888665 57999999863311112 234555555554 6999
Q ss_pred ecccccc
Q psy15217 173 GSAKLAL 179 (396)
Q Consensus 173 ~Sa~~g~ 179 (396)
+||.++.
T Consensus 156 ~sa~~~~ 162 (307)
T 1t9h_A 156 TSSKDQD 162 (307)
T ss_dssp CCHHHHT
T ss_pred EecCCCC
Confidence 9998864
No 249
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.27 E-value=0.0011 Score=62.19 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=68.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChh-------H--hhcCceEEeeeeE--E---------
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE-------E--KARGITINTAHIE--Y--------- 70 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~-------e--~~~g~t~~~~~~~--~--------- 70 (396)
+.-.++++|..|||||||++.|.+.....++...... .|.... . ...++.+-..... +
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g--~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l 233 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA--GDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 233 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC--CCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec--ccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHH
Confidence 3457899999999999999999887654332211111 122110 0 1224433221110 0
Q ss_pred ---eeCCeeEEEEecCChhhh----HHHH---Hhh-----hhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEE
Q psy15217 71 ---ETKARHYAHVDCPGHADY----IKNM---ITG-----AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFL 135 (396)
Q Consensus 71 ---~~~~~~~~iiDtpG~~~~----~~~~---~~~-----~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvvi 135 (396)
...+....++|+.|...+ ..+. ... ...++-.+||+|++.|...... ...+....++. +| ++
T Consensus 234 ~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~~g~t-~i-ii 310 (359)
T 2og2_A 234 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGIT-GL-IL 310 (359)
T ss_dssp HHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCCC-EE-EE
T ss_pred HHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHhcCCe-EE-EE
Confidence 012344678999994332 1111 111 1247788999998776554332 11233345776 44 46
Q ss_pred eccCCCCH
Q psy15217 136 NKADMVDD 143 (396)
Q Consensus 136 NK~D~~~~ 143 (396)
||+|....
T Consensus 311 ThlD~~~~ 318 (359)
T 2og2_A 311 TKLDGSAR 318 (359)
T ss_dssp ESCTTCSC
T ss_pred ecCccccc
Confidence 99997643
No 250
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.25 E-value=0.0038 Score=55.83 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=48.0
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCC
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM 140 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~ 140 (396)
..+.+.|+|||+...........+..+|.+++|+.+...........+..+...+++.+-+++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 45779999999854322222222336899999999887666666777777777888866467899884
No 251
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.22 E-value=0.00051 Score=60.85 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=47.4
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccC
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 139 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D 139 (396)
..+.+.|+|||+.-.. .+...+..+|.+++|+.++..........+..+..++++.+.+++||.+
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 4678999999985443 3344457799999999987543444555556677778887777899998
No 252
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.22 E-value=0.0011 Score=65.55 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=82.5
Q ss_pred cHHHHHHHhhhhCCCCCCCCCCceeEEEEEEEeeCC---CceEEEEEEEeeEEecCCEEEEeecCC-ceeEEEEEEEecc
Q psy15217 190 SILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG---RGTVVTGRVERGIVRVGEELEIIGIKD-TVKTTCTGVEMFR 265 (396)
Q Consensus 190 ~~~~Ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~---~G~v~~g~v~~G~l~~g~~v~~~p~~~-~~~~~v~si~~~~ 265 (396)
-++++-+++...+++ .....-.-.+-|.++|.++. .|+++..+|..|.++.|..+.+.-.+. -...++.|+++++
T Consensus 426 l~~~~~~~~~~~l~~-~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k 504 (537)
T 3izy_P 426 LIEDLQEELSSRLPC-IVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHK 504 (537)
T ss_dssp SHHHHHHHHSSSSSC-SSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSS
T ss_pred HHHHHHHHHHhccCC-ceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccC
Confidence 467777777776653 33334445678899999874 578999999999999999999985322 1456788999999
Q ss_pred eeeCeeecCCeEEEEecccCccCCCCCeEEe
Q psy15217 266 KLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296 (396)
Q Consensus 266 ~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 296 (396)
+.+.++..|.-|++.+.+ ...+++.||+|-
T Consensus 505 ~~v~ev~~g~ecgi~~~~-~~~~~~~gd~ie 534 (537)
T 3izy_P 505 DDTSVVKTGMDCGLSLDE-EKIEFKVGDAII 534 (537)
T ss_dssp CCCSEEETTCEEEEESSS-SCSSCSCCCEEE
T ss_pred cccceEcCCCEEEEEEcC-cccCCCCCCEEE
Confidence 999999999999999986 135899999874
No 253
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.15 E-value=0.0035 Score=62.93 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=69.6
Q ss_pred ceeEEEE--EEEeeCCCceEEEEEEEeeEEecCCEEEEeecCCceeEEEEEEEecceeeCeeecCCeEEEEecccC-ccC
Q psy15217 212 AFLLPVE--DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTK-RED 288 (396)
Q Consensus 212 ~~~~~i~--~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~p~~~~~~~~v~si~~~~~~~~~a~~G~~v~l~l~~~~-~~~ 288 (396)
|..+.|. .+|+.+. |.++..+|..|.++.|..+.+ +.+ ....++.|++++++.++++..|+-|++.+.+.. -.+
T Consensus 463 ~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~-~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~ 539 (594)
T 1g7s_A 463 PASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDG-ETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKT 539 (594)
T ss_dssp CEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-TTS-CEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTT
T ss_pred eEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-cCC-cEEEEEehhcccCccccccCCCCEEEEEEeCcccCCC
Confidence 4445444 6898776 899999999999999999988 433 367899999999999999999999999998632 268
Q ss_pred CCCCeEEecC
Q psy15217 289 VERGQVLAKP 298 (396)
Q Consensus 289 i~~G~vl~~~ 298 (396)
++.||+|-.-
T Consensus 540 ~~~~d~~~~~ 549 (594)
T 1g7s_A 540 IHEGDTLYVD 549 (594)
T ss_dssp BCTTCEEEEC
T ss_pred CCCCCEEEEE
Confidence 9999998644
No 254
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.15 E-value=0.0031 Score=54.42 Aligned_cols=122 Identities=10% Similarity=0.010 Sum_probs=69.0
Q ss_pred EEEE-eCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhh----cCceEEeeee-EE--eeCCeeEEEEecCCh-
Q psy15217 15 VGTI-GHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKA----RGITINTAHI-EY--ETKARHYAHVDCPGH- 85 (396)
Q Consensus 15 i~i~-G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~----~g~t~~~~~~-~~--~~~~~~~~iiDtpG~- 85 (396)
|+++ +..|+||||+.-.|.......+ ... ..-+|....-.. .....+.... .+ -...+.+.++|||+.
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~Vl--liD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~ 79 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETL--LIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARP 79 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEE--EEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCC
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEE--EEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCc
Confidence 5554 5678999999999987665543 211 101121110000 0000000000 00 013567999999996
Q ss_pred hhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHc-CCCeEEEEEeccCCCC
Q psy15217 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQV-GVPYIVVFLNKADMVD 142 (396)
Q Consensus 86 ~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~-~ip~iIvviNK~D~~~ 142 (396)
... .+...+..+|.+++++.++......+...+..+... +.+ +.+++|++|...
T Consensus 80 ~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~ 134 (209)
T 3cwq_A 80 EDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYP 134 (209)
T ss_dssp SSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTT
T ss_pred CcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCcc
Confidence 432 233456679999999998764445555666666664 666 555689999764
No 255
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.89 E-value=0.0038 Score=55.77 Aligned_cols=68 Identities=13% Similarity=0.243 Sum_probs=48.7
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCH
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~ 143 (396)
.+.+.|+|+|+... ..+...+..+|.+++|+.+.......+...+..+...+.+.+-+++|++|....
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~ 177 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGI 177 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTH
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcccc
Confidence 46799999998544 344555678999999998875444455556666666677777678899997554
No 256
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.70 E-value=0.0097 Score=55.69 Aligned_cols=74 Identities=22% Similarity=0.349 Sum_probs=46.1
Q ss_pred hhcCCEEEEEEecCCCCC--hhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCeEEEe
Q psy15217 96 AAQMDGAILVCSAADGPM--PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 173 (396)
Q Consensus 96 ~~~~d~~llVvda~~g~~--~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~i~~ 173 (396)
+..+|.+++|. |..... ......+..+...+++.+| |+||+|+.+.+. .+.+. ++...+...++ +++++
T Consensus 128 ~anvD~v~iv~-a~~P~~~~~~i~r~L~~a~~~~~~~ii-vlNK~DL~~~~~-~~~~~-~~~~~y~~~G~-----~v~~~ 198 (358)
T 2rcn_A 128 AANIDQIVIVS-AILPELSLNIIDRYLVGCETLQVEPLI-VLNKIDLLDDEG-MDFVN-EQMDIYRNIGY-----RVLMV 198 (358)
T ss_dssp EECCCEEEEEE-ESTTTCCHHHHHHHHHHHHHHTCEEEE-EEECGGGCCHHH-HHHHH-HHHHHHHTTTC-----CEEEC
T ss_pred HhcCCEEEEEE-eCCCCCCHHHHHHHHHHHHhcCCCEEE-EEECccCCCchh-HHHHH-HHHHHHHhCCC-----cEEEE
Confidence 56789999764 444322 2223344455667999765 679999998643 12222 33444555554 59999
Q ss_pred ccccc
Q psy15217 174 SAKLA 178 (396)
Q Consensus 174 Sa~~g 178 (396)
||.++
T Consensus 199 Sa~~~ 203 (358)
T 2rcn_A 199 SSHTQ 203 (358)
T ss_dssp BTTTT
T ss_pred ecCCC
Confidence 99986
No 257
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.64 E-value=0.0042 Score=56.43 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=51.8
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCC
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~ 142 (396)
.+.+.|+|||....... ....+..+|.+++|+.+.........+.+..+...+.+.+-+++||+|...
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 35689999999654321 223345799999999998877777788888888888887777889998654
No 258
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.61 E-value=0.028 Score=51.26 Aligned_cols=66 Identities=15% Similarity=0.046 Sum_probs=49.9
Q ss_pred eeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 75 RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 75 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
+.++|+|||+...... .......+|.+++|+.+......+..+.+..+...+++.+-+++|++|..
T Consensus 214 yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 5689999999654322 22234579999999999887778888888888888887665678999864
No 259
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.59 E-value=0.015 Score=52.28 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=49.2
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCC
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~ 142 (396)
.+.+.|+|||+..... .....+..+|.+++|+.+.........+.+..+...+++.+=+++|++|...
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 3568999999964332 1222335689999999998877777777778888888886656789999654
No 260
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.51 E-value=0.036 Score=50.30 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=44.4
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHH------cCCCeEEEEEeccCCCC
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ------VGVPYIVVFLNKADMVD 142 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~------~~ip~iIvviNK~D~~~ 142 (396)
.+.+.|+|||+..... +...+..+|.+++++.+...........+..+.. .+++.+-+++|+.|...
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 4678999999965442 2334456999999999887555444444444433 25665556789999765
No 261
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.38 E-value=0.0044 Score=60.59 Aligned_cols=105 Identities=10% Similarity=0.020 Sum_probs=56.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhhhcCCccccccccCCChhHhhcCceEEeeeeEEeeCCeeEEEEecCChhh--
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD-- 87 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~-- 87 (396)
+...+|+++|.+|+||||+..+|............. ...|....+. .| ......++|..|.+.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~--~~~d~~r~~~-~g------------~~~~~~ifd~~g~~~~r 101 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTRE--FNVGQYRRDM-VK------------TYKSFEFFLPDNEEGLK 101 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE--EEHHHHHHHH-HC------------SCCCGGGGCTTCHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceE--Eecchhhhhh-cc------------CCCcccccCCCCHHHHH
Confidence 345789999999999999999997654321100000 0000000000 00 011224688888733
Q ss_pred hHHHH--------HhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCC
Q psy15217 88 YIKNM--------ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVP 129 (396)
Q Consensus 88 ~~~~~--------~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip 129 (396)
+.... ...+...++.++|+|++.....+-...+..++..+.+
T Consensus 102 ~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~ 151 (469)
T 1bif_A 102 IRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYK 151 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCc
Confidence 23222 2333346788999999876444444444556666665
No 262
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.27 E-value=0.0075 Score=55.25 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=41.5
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHH----cCCCeEEEEEeccCC
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ----VGVPYIVVFLNKADM 140 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~----~~ip~iIvviNK~D~ 140 (396)
.+.+.|+|||+..... .+...+..+|.+++|+.+...........+..+.. .+++.+-+++|+.+.
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 4689999999853311 12344567999999998865333344444555554 245544357899984
No 263
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.21 E-value=0.0028 Score=53.30 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.+++++|+.|+|||||++.|.+..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998765
No 264
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.17 E-value=0.03 Score=49.03 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=47.0
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcC--CCeEEEEEeccCCCC
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVG--VPYIVVFLNKADMVD 142 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~--ip~iIvviNK~D~~~ 142 (396)
.+.+.++|+|+.... .+...+..+|.+++++.+.......+...+..+...+ .+.+-+++|+.|...
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 467899999985432 3344566799999999987544455566666676666 444666789999654
No 265
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.16 E-value=0.0013 Score=60.28 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
-.++++|++|+|||||++.|.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47899999999999999999764
No 266
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.15 E-value=0.017 Score=55.53 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=23.5
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++..-|+|+|...+|||+|+|.|+...
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~ 91 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYM 91 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHh
Confidence 4567788999999999999999887543
No 267
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.12 E-value=0.025 Score=50.43 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=43.4
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcC--CCeEEEEEeccCCC
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVG--VPYIVVFLNKADMV 141 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~--ip~iIvviNK~D~~ 141 (396)
..+.+.|+|+|+.... .+...+..+|.+++++.+...........+..+...+ .+ +.+++|+++..
T Consensus 143 ~~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~-~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLP-IFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCC-EEEEEEEECTT
T ss_pred cCCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCC-EEEEEecccCc
Confidence 3467999999995432 3444556699999999987643344445555566554 45 44578999543
No 268
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.03 E-value=0.23 Score=46.24 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=43.5
Q ss_pred CCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCC---H--HHHHHHHHHHHHHHHhhcCC
Q psy15217 99 MDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD---D--EELLELVEIEIRELLNKYEF 163 (396)
Q Consensus 99 ~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~---~--~~~~~~i~~~~~~~l~~~~~ 163 (396)
.+.+++|.-+..-....++..+..+...|+|..-+++|++.... + ....+.....++++.+.++.
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 306 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGD 306 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCC
Confidence 36788888877655567788888899999998878899998652 1 22222233445555555543
No 269
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.02 E-value=0.017 Score=51.23 Aligned_cols=65 Identities=9% Similarity=0.087 Sum_probs=42.6
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCC--------CeEEEEEeccCC
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGV--------PYIVVFLNKADM 140 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~i--------p~iIvviNK~D~ 140 (396)
.+.+.++|+|+... ..+...+..+|.+++|+++...........+..+...+. ..+-+++|+.|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 57899999998543 245556678999999999875333334444444444331 345567899984
No 270
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.97 E-value=0.0034 Score=53.71 Aligned_cols=24 Identities=25% Similarity=0.140 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
-.++++|+.|||||||++.|.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998754
No 271
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.94 E-value=0.004 Score=52.27 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
-.++++|++|||||||++.|.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998754
No 272
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.87 E-value=0.0055 Score=51.67 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
+.-.++++|.+|||||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999999764
No 273
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.83 E-value=0.0058 Score=52.57 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=24.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
++...|+|+|++|||||||++.|.+...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999987654
No 274
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.75 E-value=0.0067 Score=52.12 Aligned_cols=27 Identities=37% Similarity=0.496 Sum_probs=22.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
++...|+++|+.|||||||++.|.+..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998753
No 275
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.75 E-value=0.0054 Score=51.74 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
.++++|+.|||||||++.|.+...
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 378999999999999999987653
No 276
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.75 E-value=0.0053 Score=52.76 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
-.++++|+.|||||||++.|.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998764
No 277
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.72 E-value=0.0055 Score=52.30 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
-.++++|+.|||||||++.|.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 468999999999999999998753
No 278
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.56 E-value=0.019 Score=51.94 Aligned_cols=67 Identities=13% Similarity=0.011 Sum_probs=37.9
Q ss_pred CeeEEEEecCChhhhHHH-HHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHH----cCCCeEEEEEeccCC
Q psy15217 74 ARHYAHVDCPGHADYIKN-MITGAAQMDGAILVCSAADGPMPQTREHILLARQ----VGVPYIVVFLNKADM 140 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~-~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~----~~ip~iIvviNK~D~ 140 (396)
.+.+.|+||||....... .......+|.+++++.+...........+..+.. .+++.+-+++|+.+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 568999999995311000 0111246999999998764222222233333332 266655567899874
No 279
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.55 E-value=0.0069 Score=52.59 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
-.++++|+.|||||||++.|.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998764
No 280
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.54 E-value=0.0075 Score=49.56 Aligned_cols=25 Identities=36% Similarity=0.353 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.-.++++|+.|||||||++.|.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999999875
No 281
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.52 E-value=0.066 Score=47.68 Aligned_cols=68 Identities=13% Similarity=0.034 Sum_probs=38.8
Q ss_pred CeeEEEEecCChhhhHHH-HHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHc----CCCeEEEEEeccCCC
Q psy15217 74 ARHYAHVDCPGHADYIKN-MITGAAQMDGAILVCSAADGPMPQTREHILLARQV----GVPYIVVFLNKADMV 141 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~-~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~----~ip~iIvviNK~D~~ 141 (396)
.+.+.++||||....... .......+|.+++++.+...........+..+..+ +++.+-+++|+.+..
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~ 187 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA 187 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc
Confidence 467999999995321000 00112469999999988643223333333344332 566555678999753
No 282
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.50 E-value=0.0073 Score=52.53 Aligned_cols=26 Identities=15% Similarity=0.056 Sum_probs=22.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
.-.++++|+.|||||||++.|.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34789999999999999999987643
No 283
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.48 E-value=1.1 Score=40.96 Aligned_cols=42 Identities=7% Similarity=-0.013 Sum_probs=33.6
Q ss_pred CEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 100 DGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 100 d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
+.+++|.-+..-....++..+..+...|++..-+++|++.-.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 478888887665556778888888999999877788999764
No 284
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.37 E-value=0.011 Score=50.86 Aligned_cols=26 Identities=19% Similarity=0.101 Sum_probs=22.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
+..-|+++|++|||||||++.|....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34578999999999999999998754
No 285
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.37 E-value=0.01 Score=50.68 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=22.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
+...|+++|..|||||||++.|.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999997654
No 286
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.31 E-value=0.0073 Score=53.18 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999998653
No 287
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.28 E-value=0.009 Score=49.67 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=18.3
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIA 33 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~ 33 (396)
--++++|++|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 357999999999999999754
No 288
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.27 E-value=0.012 Score=50.22 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=21.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
...|+++|++|||||||++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999998754
No 289
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.24 E-value=0.015 Score=48.26 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
...|+++|.+|||||||...|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457999999999999999998764
No 290
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.24 E-value=0.0089 Score=52.19 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.++++|+.|||||||++.|.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999865
No 291
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.17 E-value=0.011 Score=52.17 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
=.++++|+.|||||||++.|.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998753
No 292
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.16 E-value=0.014 Score=49.71 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.-.|+++|+.|+|||||++.|.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4568999999999999999998754
No 293
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.12 E-value=0.011 Score=51.04 Aligned_cols=22 Identities=36% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.++++|+.|||||||++.|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999886
No 294
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.04 E-value=0.011 Score=52.16 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.++++|+.|||||||++.|.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999764
No 295
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.01 E-value=0.011 Score=51.79 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.++++|+.|||||||++.|.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999865
No 296
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.99 E-value=0.015 Score=48.98 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChHHHHHHHHh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIAT 34 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~ 34 (396)
.++++|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 297
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.98 E-value=0.014 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
..|+++|.+|||||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 298
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.98 E-value=0.011 Score=51.31 Aligned_cols=23 Identities=43% Similarity=0.387 Sum_probs=20.2
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 299
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.97 E-value=0.014 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=20.2
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.++++|+.|||||||++.|.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999874
No 300
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.97 E-value=0.011 Score=52.19 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 301
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.97 E-value=0.017 Score=53.05 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=24.4
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
.++...|+|+|++|||||||++.|.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34567899999999999999999987643
No 302
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.97 E-value=0.014 Score=53.28 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.-.++|+|++|+|||||++.|.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3478999999999999999998765
No 303
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.95 E-value=0.012 Score=54.93 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
-.++++|++|+|||||++.|.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 368999999999999999998754
No 304
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.95 E-value=0.011 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998653
No 305
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.93 E-value=0.012 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 306
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.92 E-value=0.012 Score=52.19 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 307
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.92 E-value=0.011 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.++++|+.|||||||++.|.+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999865
No 308
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.91 E-value=0.11 Score=49.83 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=20.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
..-|+++|.+||||||+...|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 457889999999999999998753
No 309
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.88 E-value=0.018 Score=48.06 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
..++++|..|+|||||+++|+....
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4689999999999999999987643
No 310
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.87 E-value=0.013 Score=51.79 Aligned_cols=23 Identities=43% Similarity=0.432 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998753
No 311
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.87 E-value=0.018 Score=50.79 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
+...|+++|+.|||||||++.|.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999997753
No 312
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.87 E-value=0.012 Score=52.88 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999998753
No 313
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.86 E-value=0.013 Score=49.58 Aligned_cols=24 Identities=38% Similarity=0.335 Sum_probs=21.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
.++++|+.|+|||||++.|.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 478999999999999999988765
No 314
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.85 E-value=0.022 Score=48.76 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=22.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
+...|+++|..||||||+...|....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999997654
No 315
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.83 E-value=0.016 Score=51.77 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=22.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
+.-.++++|+.|||||||++.|.+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 344789999999999999999987643
No 316
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.82 E-value=0.022 Score=47.29 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLSK 38 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~~ 38 (396)
..++++|..|||||||+.+|......
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 46899999999999999999876543
No 317
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.82 E-value=0.013 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999998754
No 318
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.81 E-value=0.014 Score=50.99 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
++...|++.|..|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999998764
No 319
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.81 E-value=0.016 Score=49.50 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
...|+++|.+|||||||++.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999998654
No 320
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.80 E-value=0.016 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.3
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.++++|+.|||||||++.|.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999875
No 321
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.80 E-value=0.021 Score=52.62 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=23.8
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.+.++-|+++|.+|||||||++.|.+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999987654
No 322
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.79 E-value=0.013 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999998754
No 323
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.77 E-value=0.014 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57999999999999999998653
No 324
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.77 E-value=0.019 Score=48.99 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIAT 34 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~ 34 (396)
.+|+++|..||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999976
No 325
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.76 E-value=0.017 Score=49.19 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
...|+++|.+|||||||...|....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999997653
No 326
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.76 E-value=0.02 Score=47.10 Aligned_cols=22 Identities=18% Similarity=-0.025 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.|+++|.+||||||+...|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 327
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.75 E-value=0.014 Score=52.05 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998653
No 328
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.71 E-value=0.019 Score=48.54 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.9
Q ss_pred EEEEeCCCCChHHHHHHHHhhh
Q psy15217 15 VGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 15 i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
|+++|++|+|||||+++|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998653
No 329
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.69 E-value=0.018 Score=47.41 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAI 32 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L 32 (396)
..|+++|.+||||||+...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 330
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.69 E-value=0.011 Score=49.29 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
.++++|..|||||||+..|.+...
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999987643
No 331
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.67 E-value=0.021 Score=49.48 Aligned_cols=23 Identities=30% Similarity=0.266 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
..|+++|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998754
No 332
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.66 E-value=0.023 Score=51.58 Aligned_cols=30 Identities=20% Similarity=0.107 Sum_probs=24.9
Q ss_pred CCCeeEEEEEeCCCCChHHHHHHHHhhhhh
Q psy15217 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSK 38 (396)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSTLi~~L~~~~~~ 38 (396)
.++...|+|+|.+|||||||++.|......
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345688999999999999999998766543
No 333
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.65 E-value=0.015 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 334
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.64 E-value=0.015 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.++++|+.|||||||++.|.+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5799999999999999999765
No 335
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.63 E-value=0.015 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.134 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999998753
No 336
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.62 E-value=0.016 Score=51.57 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.++++|+.|||||||++.|.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999865
No 337
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.61 E-value=0.019 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIAT 34 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~ 34 (396)
...|+++|..|||||||++.|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999983
No 338
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.59 E-value=0.027 Score=47.94 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=23.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
.+...|+++|..|||||||...|.+...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999987654
No 339
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.59 E-value=0.023 Score=47.10 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIAT 34 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~ 34 (396)
..|+++|.+||||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999999976
No 340
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.58 E-value=0.025 Score=48.39 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
++...|+++|.+|||||||++.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999764
No 341
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.57 E-value=0.024 Score=49.03 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
++..+|+++|.+||||||+...|...
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999999754
No 342
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.56 E-value=0.038 Score=46.30 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
++...|+++|.+||||||+...|.....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987654
No 343
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.56 E-value=0.095 Score=45.51 Aligned_cols=29 Identities=21% Similarity=-0.093 Sum_probs=21.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLSK 38 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~~ 38 (396)
.+-.-+++.|++|+||||++-.+......
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 34456788999999999988777655433
No 344
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.56 E-value=0.022 Score=48.67 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIAT 34 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~ 34 (396)
..|+++|..||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999965
No 345
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.54 E-value=0.038 Score=48.18 Aligned_cols=67 Identities=16% Similarity=0.287 Sum_probs=48.8
Q ss_pred CeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCC
Q psy15217 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (396)
Q Consensus 74 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~ 142 (396)
.+.+.++|+|+... ..+...+..+|.+++|+.+.......+...+..+...+.+.+-+++||.|...
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 46789999998544 34455667899999999887544445566666666778777777889999654
No 346
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.52 E-value=0.037 Score=47.12 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.+...|+++|..|||||||++.|.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999997654
No 347
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.51 E-value=0.027 Score=47.71 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
....|+++|..||||||+...|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999998753
No 348
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.48 E-value=0.028 Score=51.52 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=23.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
.+...|+++|..|||||||++.|.+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4457899999999999999999987543
No 349
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.47 E-value=0.021 Score=52.21 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q psy15217 13 INVGTIGHVDHGKTTLTAAIA 33 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~ 33 (396)
-.++++|++|+|||||++.|.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 350
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.45 E-value=0.027 Score=47.33 Aligned_cols=24 Identities=42% Similarity=0.421 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
...|+++|.+||||||+...|...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999754
No 351
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.43 E-value=0.025 Score=48.66 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
++|+++|.+||||||+...|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999653
No 352
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.38 E-value=0.025 Score=47.96 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.|++.|..||||||+...|....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999997643
No 353
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.38 E-value=0.027 Score=47.07 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
...|+++|.+||||||+...|...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999753
No 354
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.37 E-value=0.024 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
-.++++|+.|||||||+..|.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 355
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.35 E-value=0.014 Score=50.99 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=15.6
Q ss_pred eEEEEEeCCCCChHHHHHHHH-hhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIA-TVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~-~~~ 36 (396)
-.++++|+.|||||||++.|. +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 468999999999999999998 653
No 356
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.34 E-value=0.02 Score=51.28 Aligned_cols=23 Identities=43% Similarity=0.497 Sum_probs=20.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 357
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.33 E-value=0.021 Score=51.94 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.++++|+.|||||||++.|.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5799999999999999999865
No 358
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.31 E-value=0.027 Score=48.41 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
++|+++|.+||||||+...|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999643
No 359
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.30 E-value=0.029 Score=46.83 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
..+|+++|.+||||||+...|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999754
No 360
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.26 E-value=0.033 Score=49.14 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=22.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
++..+|+++|.+||||||+...|...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999754
No 361
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.22 E-value=0.024 Score=49.76 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIAT 34 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~ 34 (396)
-.++++|+.|||||||+..|+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3689999999999999999984
No 362
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.21 E-value=0.035 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
.|++.|.+||||||+...|.....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999976544
No 363
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.18 E-value=0.043 Score=46.87 Aligned_cols=26 Identities=19% Similarity=0.089 Sum_probs=22.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
....|++.|.+||||||+...|....
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999997654
No 364
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.17 E-value=0.28 Score=49.15 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=32.1
Q ss_pred CEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 100 DGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 100 d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
+.+++|+.+.......+...+..+...|++..-+++|+++-.
T Consensus 199 t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 199 TRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 368888888765556677777788888988777778999854
No 365
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.15 E-value=0.034 Score=47.26 Aligned_cols=25 Identities=36% Similarity=0.382 Sum_probs=21.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
...|+++|.+||||||+...|....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999997643
No 366
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.15 E-value=0.024 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 57999999999999999998753
No 367
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.14 E-value=0.015 Score=53.27 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 68999999999999999987653
No 368
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.11 E-value=0.034 Score=46.51 Aligned_cols=25 Identities=24% Similarity=0.081 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
..|++.|.+||||||+...|.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999976543
No 369
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.10 E-value=0.023 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.-+++++|+.|||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998754
No 370
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.08 E-value=0.029 Score=48.76 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
...|+++|.+||||||+...|...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999743
No 371
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.07 E-value=0.022 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
-.++++|++|+|||||++.|.+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 36899999999999999999864
No 372
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.06 E-value=0.035 Score=46.55 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
..+|+++|.+||||||+...|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998754
No 373
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.02 E-value=0.038 Score=51.73 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=22.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSK 38 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~ 38 (396)
.++++|+.|||||||++.|++....
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccC
Confidence 7999999999999999999876543
No 374
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.02 E-value=0.04 Score=46.36 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
+...|+++|.+||||||+...|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999754
No 375
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.01 E-value=0.033 Score=47.25 Aligned_cols=24 Identities=25% Similarity=0.082 Sum_probs=21.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
...|+++|..||||||++..|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999764
No 376
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.98 E-value=0.029 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57999999999999999998754
No 377
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.97 E-value=0.037 Score=46.46 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
...|+++|.+||||||+...|...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998653
No 378
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.95 E-value=0.041 Score=46.86 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=22.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
...|++.|.+||||||+...|.....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46799999999999999999976543
No 379
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.93 E-value=0.026 Score=52.99 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.-.++++|+.|||||||++.|.+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3479999999999999999998753
No 380
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.91 E-value=0.03 Score=46.62 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
.-.++++|++|+|||||+..+.+...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999987643
No 381
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.90 E-value=0.047 Score=46.34 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=22.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
+....|+++|.+||||||+...|...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999754
No 382
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.88 E-value=0.039 Score=46.85 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.....|+++|.+||||||+...|...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999754
No 383
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.83 E-value=0.27 Score=45.75 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
-.+.+.|++|+|||||+.++....
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999987654
No 384
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.80 E-value=0.031 Score=52.19 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998754
No 385
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.77 E-value=0.038 Score=45.75 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
..|.++|.+||||||+...|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999764
No 386
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.77 E-value=0.037 Score=49.10 Aligned_cols=24 Identities=29% Similarity=0.219 Sum_probs=21.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIAT 34 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~ 34 (396)
+...|+++|..||||||+++.|..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999973
No 387
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.76 E-value=0.045 Score=46.41 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=22.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
..+..|+++|..||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998653
No 388
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.76 E-value=0.032 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 57999999999999999998754
No 389
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.71 E-value=0.23 Score=46.28 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
--+.|.|++|+|||||+.++....
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998653
No 390
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.70 E-value=0.024 Score=52.52 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998753
No 391
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.68 E-value=0.039 Score=52.04 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=22.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
+.-.++++|+.|||||||++.|.+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 344799999999999999999987643
No 392
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.66 E-value=0.034 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57999999999999999998754
No 393
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.66 E-value=0.043 Score=47.13 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
++|++.|.+||||||+...|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999754
No 394
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.66 E-value=0.021 Score=49.00 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
.|+|.|..||||||++..|.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987543
No 395
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.65 E-value=0.034 Score=52.40 Aligned_cols=23 Identities=35% Similarity=0.302 Sum_probs=20.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 57999999999999999998754
No 396
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.62 E-value=0.05 Score=45.78 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.|++.|..||||||++..|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997654
No 397
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.62 E-value=0.039 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
+|++.|.+||||||+...|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 398
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.61 E-value=0.035 Score=44.93 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
.-.++++|++|+|||||+..+.+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34689999999999999999987543
No 399
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.60 E-value=0.043 Score=48.58 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
...+.|+|.|.+||||||+...|...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998764
No 400
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.59 E-value=0.045 Score=47.10 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIAT 34 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~ 34 (396)
...|++.|..||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 401
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.59 E-value=0.036 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 57999999999999999998754
No 402
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.58 E-value=0.049 Score=49.32 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=22.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.....|+++|.+||||||+...|...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999764
No 403
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.54 E-value=0.052 Score=45.09 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=22.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
+...|+++|..||||||+.+.|....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999997654
No 404
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.53 E-value=0.037 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=20.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57999999999999999998754
No 405
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.52 E-value=1.6 Score=39.97 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=32.0
Q ss_pred CEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCC
Q psy15217 100 DGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM 140 (396)
Q Consensus 100 d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~ 140 (396)
+.+++|..+.......+...+..+...|++..-+++|++..
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~ 262 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLL 262 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 47888888765555667777888888899988778999983
No 406
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.52 E-value=0.57 Score=43.81 Aligned_cols=23 Identities=35% Similarity=0.297 Sum_probs=19.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.+.|.|.+|+|||||+-+|....
T Consensus 76 li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHH
Confidence 57789999999999999987653
No 407
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.51 E-value=0.046 Score=48.42 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=23.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
+....|+++|.+||||||+...|....
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 445789999999999999999997653
No 408
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.48 E-value=0.043 Score=46.04 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=20.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.|++.|.+||||||+...|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997654
No 409
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.43 E-value=0.052 Score=49.97 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.-.++++|..|||||||++.|++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 346789999999999999999875
No 410
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.36 E-value=0.045 Score=45.31 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=19.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
+|+++|.+||||||+...|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999754
No 411
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.30 E-value=0.073 Score=44.45 Aligned_cols=23 Identities=30% Similarity=0.169 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
..|+++|.+||||||+...|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998653
No 412
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.22 E-value=0.06 Score=45.33 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
...|+++|.+||||||+...|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999754
No 413
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.20 E-value=0.05 Score=52.07 Aligned_cols=26 Identities=31% Similarity=0.227 Sum_probs=22.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
+.=.++++|+.|||||||++.|++..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 33468999999999999999998754
No 414
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.19 E-value=0.052 Score=45.18 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
-.+|+|+.|+|||||+.+|....
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999997654
No 415
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.18 E-value=0.062 Score=48.46 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHH
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIA 33 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~ 33 (396)
.....|+++|.+||||||+...|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999986
No 416
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.17 E-value=0.037 Score=54.46 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
-+++++|+.|||||||++.|++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999864
No 417
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.17 E-value=0.03 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=20.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57999999999999999998754
No 418
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.15 E-value=0.055 Score=46.73 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
...|+++|.+||||||+...|...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999754
No 419
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.12 E-value=0.048 Score=45.33 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=20.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
..+|+++|.+|+||||+...|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457899999999999999998754
No 420
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.07 E-value=0.05 Score=51.55 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
.++++|+.|||||||++.|.+...
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 579999999999999999987643
No 421
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.02 E-value=1 Score=45.06 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=33.1
Q ss_pred cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 98 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 98 ~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
.+|.+++|+.+.......+...+..+...|++..-+++|+++-.
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~ 532 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSI 532 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTT
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCC
Confidence 45888999887655555667777777788998777778999854
No 422
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=93.02 E-value=1.9 Score=37.96 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=43.1
Q ss_pred CeeEEEEecCChh-----hh-HHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccC
Q psy15217 74 ARHYAHVDCPGHA-----DY-IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 139 (396)
Q Consensus 74 ~~~~~iiDtpG~~-----~~-~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D 139 (396)
.+.+.++|.||-- +. ..+..-......-+|||+|+..+-..++...+..+...+++..=|++||+.
T Consensus 126 ~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 126 PGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp TTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred cCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 4578999999721 10 111111112346689999998766666666666677778887777789985
No 423
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.01 E-value=0.065 Score=45.98 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
++|+++|++||||+|....|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999754
No 424
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.00 E-value=0.066 Score=46.84 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.++.|++.|.+||||||+...|...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998754
No 425
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.00 E-value=0.039 Score=45.91 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=16.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
...|++.|.+||||||+...|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998654
No 426
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.99 E-value=0.068 Score=43.80 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
-+|++.|..||||||+...|...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998654
No 427
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.94 E-value=0.072 Score=45.94 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
-.++++|++|+|||||+..|.....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999986543
No 428
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.90 E-value=0.071 Score=46.59 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=22.6
Q ss_pred CCCCeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 8 RTKPHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
...+...|+++|..||||||+...|...
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3455678999999999999999998753
No 429
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.85 E-value=0.77 Score=41.95 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.+.+.|++|+|||||+-++....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999998887553
No 430
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.85 E-value=0.065 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.216 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.|++.|.+||||||+...|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 431
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.81 E-value=0.058 Score=52.30 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
-.++++|+.|||||||++.|.+...
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CEEEEECCCCCCHHHHHHHHhCccc
Confidence 4689999999999999999987654
No 432
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.79 E-value=0.031 Score=52.30 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999998753
No 433
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=92.76 E-value=0.63 Score=40.79 Aligned_cols=83 Identities=8% Similarity=-0.041 Sum_probs=49.9
Q ss_pred CeeEEEEecCChhh-----hHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCCCHHHHHH
Q psy15217 74 ARHYAHVDCPGHAD-----YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLE 148 (396)
Q Consensus 74 ~~~~~iiDtpG~~~-----~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~~~~~~~~ 148 (396)
...+.++|.+|.-. ...+..-......-+|||+++..|...++...+..+...+++ .=+++|+++-.. ...+
T Consensus 131 ~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~--~~~~ 207 (242)
T 3qxc_A 131 TYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNNT--AFHS 207 (242)
T ss_dssp TCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTCC--HHHH
T ss_pred cCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCcc--chhh
Confidence 46789999987211 001111111123458999999887666666677777778999 777889998654 3333
Q ss_pred HHHHHHHHHHh
Q psy15217 149 LVEIEIRELLN 159 (396)
Q Consensus 149 ~i~~~~~~~l~ 159 (396)
.....+++...
T Consensus 208 ~~~p~le~~~~ 218 (242)
T 3qxc_A 208 ISLPYIELFNT 218 (242)
T ss_dssp HTHHHHHHHHH
T ss_pred hhHHHHHHhcC
Confidence 33334444444
No 434
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.73 E-value=0.068 Score=49.82 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
+++++|+.|+|||||++.|.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999875
No 435
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=92.71 E-value=0.6 Score=40.51 Aligned_cols=69 Identities=13% Similarity=0.011 Sum_probs=44.1
Q ss_pred CCeeEEEEecCChhh--hH--HHHHhhhh-cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 73 KARHYAHVDCPGHAD--YI--KNMITGAA-QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~--~~--~~~~~~~~-~~d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
..+.+.++|+||.-. .. ..+..-+. ...-+|+|+++..+-..++...+..+...+++..=+++|+++-.
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 456799999987211 00 00111111 13448899999876666676667777788998766778999754
No 436
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.69 E-value=0.068 Score=46.05 Aligned_cols=23 Identities=30% Similarity=0.206 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.+|+++|.+||||||+...|...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999754
No 437
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.55 E-value=0.044 Score=49.73 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=19.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.+..|+|.|..||||||+.+.|....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999997643
No 438
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.55 E-value=0.09 Score=45.82 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
...+|+++|.+||||||+...|...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999754
No 439
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.54 E-value=0.096 Score=44.82 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
+...|+++|..||||||+...|.....
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 446799999999999999999976544
No 440
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.50 E-value=0.075 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.137 Sum_probs=20.2
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.|+++|.+|||||||...|....
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999999997643
No 441
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.50 E-value=0.066 Score=43.97 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.|++.|.+||||||+...|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 442
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.48 E-value=0.39 Score=42.34 Aligned_cols=68 Identities=9% Similarity=0.111 Sum_probs=42.1
Q ss_pred CCeeEEEEecCChhhhHHHHHhhhhcCCEEEEEEecCCCCChhHHHHHHHHHH------cCCCeEEEEEeccCCCC
Q psy15217 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ------VGVPYIVVFLNKADMVD 142 (396)
Q Consensus 73 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~llVvda~~g~~~qt~e~l~~~~~------~~ip~iIvviNK~D~~~ 142 (396)
..+.+.++|||+..... +...+..+|.+++++.+...........+..+.. .+++.+-+++|+.|...
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCc
Confidence 45789999999964432 3344567999999999875333323333333332 14554335689998654
No 443
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.47 E-value=0.078 Score=47.16 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
..|+++|.+||||||+...|....
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999997653
No 444
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.42 E-value=0.089 Score=48.69 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
..|+|+|++|||||||...|....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999998654
No 445
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.39 E-value=0.12 Score=45.11 Aligned_cols=28 Identities=25% Similarity=0.176 Sum_probs=23.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSK 38 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~ 38 (396)
+...|++.|.+||||||++..|......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999876543
No 446
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.32 E-value=4.7 Score=37.26 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=32.5
Q ss_pred CEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCCC
Q psy15217 100 DGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (396)
Q Consensus 100 d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~~ 141 (396)
+.+++|..+..-....+...+..+...|++..-+++|++...
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~ 273 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFA 273 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 467788777655556677788888899999877788998753
No 447
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.30 E-value=0.072 Score=52.81 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
=.++++|+.|||||||++.|.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 448
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.27 E-value=0.073 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
-.++++|+.|||||||++.|.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999998754
No 449
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.26 E-value=0.083 Score=42.68 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=19.0
Q ss_pred EEEEeCCCCChHHHHHHHHhhh
Q psy15217 15 VGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 15 i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.+|+|+.|+|||||+.+|....
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999987544
No 450
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.26 E-value=0.21 Score=46.18 Aligned_cols=24 Identities=21% Similarity=0.037 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
-+++.|.+|+|||||+-.+.....
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 478899999999999998876543
No 451
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.25 E-value=0.12 Score=44.72 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=19.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.-.|.++|.+||||+|....|...
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 345778999999999999999754
No 452
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.25 E-value=0.09 Score=43.75 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.|+++|.+||||||+...|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998654
No 453
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.03 E-value=0.083 Score=46.76 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
-+|+++|..||||||+...|...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999753
No 454
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.85 E-value=0.095 Score=47.46 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLS 37 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~ 37 (396)
-++++|++|+|||||+..|.+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999987654
No 455
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.84 E-value=0.11 Score=45.17 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.+++++++|.+||||||+...|...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999998754
No 456
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.79 E-value=0.07 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
=.++++|+.|||||||++.|.+..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999998754
No 457
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.78 E-value=0.077 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999998753
No 458
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.72 E-value=0.1 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.4
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
+++++|+.|+|||||++.|.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7899999999999999999875
No 459
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.71 E-value=0.096 Score=47.02 Aligned_cols=22 Identities=36% Similarity=0.327 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.+++.|++|+|||||++.|.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999864
No 460
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.70 E-value=0.45 Score=46.84 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
....|+++|.+|+||||+...|....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999997544
No 461
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.69 E-value=0.084 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 462
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.63 E-value=0.088 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999998754
No 463
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.52 E-value=0.11 Score=45.89 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.++++|++|+|||||+..|.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999865
No 464
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.35 E-value=0.11 Score=51.59 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 465
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.31 E-value=0.12 Score=44.20 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIAT 34 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~ 34 (396)
-.++++|++|+|||||+..|..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 466
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.30 E-value=0.14 Score=42.42 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIAT 34 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~ 34 (396)
.=+++.|++|+|||||.-.|..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999999986
No 467
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.29 E-value=8.7 Score=35.19 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=31.9
Q ss_pred CEEEEEEecCCCCChhHHHHHHHHHHcCCCeEEEEEeccCC
Q psy15217 100 DGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM 140 (396)
Q Consensus 100 d~~llVvda~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D~ 140 (396)
+.+++|..+..-....++..+..+...|++..-+++|++..
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~ 263 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLF 263 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcC
Confidence 46777777665455667888888899999988888999873
No 468
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.19 E-value=0.17 Score=46.18 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
+.+.-|+|+|++++|||||...|....
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhC
Confidence 334568899999999999999997653
No 469
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.14 E-value=0.15 Score=43.16 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.|++.|..||||||+...|...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999998654
No 470
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.10 E-value=0.13 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
-.++++|++|+|||||+..|...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 36889999999999999999864
No 471
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.09 E-value=0.08 Score=53.21 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999998753
No 472
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.08 E-value=0.11 Score=48.65 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=20.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.+ .+|+|+.|||||||+++++...
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHHHHh
Confidence 34 5599999999999999998654
No 473
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.08 E-value=0.14 Score=48.15 Aligned_cols=25 Identities=36% Similarity=0.341 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
+.-.++++|++|+|||||+..|.+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457899999999999999999864
No 474
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.08 E-value=1.7 Score=36.35 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.3
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.+.+.|.+|+|||||+..+....
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999997654
No 475
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.05 E-value=0.099 Score=52.55 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
=.++++|+.|||||||++.|.+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 368999999999999999998754
No 476
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.02 E-value=1.4 Score=40.07 Aligned_cols=23 Identities=22% Similarity=0.119 Sum_probs=19.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
-+.+.|.+|+|||||+-++....
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999987543
No 477
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.98 E-value=0.087 Score=52.97 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
=.++++|+.|||||||++.|.+..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 378999999999999999998653
No 478
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.96 E-value=0.73 Score=42.91 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
-.+.+.|.+|+|||||+-+|....
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999987654
No 479
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.94 E-value=0.12 Score=51.91 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|+|||||++.|.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 480
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.86 E-value=1.3 Score=40.51 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=21.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.+...+.+.|.+|+|||+|+..+...
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34457999999999999999998654
No 481
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.83 E-value=0.11 Score=51.48 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998753
No 482
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.77 E-value=0.14 Score=45.92 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.++++|++|+|||||+..|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999999865
No 483
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.76 E-value=0.16 Score=46.03 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIAT 34 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~ 34 (396)
..|+++|.+||||||+...|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 484
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.63 E-value=0.19 Score=41.51 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
....+.+.|.+|+|||||+..+....
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998654
No 485
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.54 E-value=0.096 Score=46.56 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=21.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 10 ~~~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
++...|++.|..||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999988654
No 486
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.46 E-value=0.075 Score=53.23 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
.++++|+.|||||||++.|.+.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999988765
No 487
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.42 E-value=0.15 Score=47.08 Aligned_cols=24 Identities=42% Similarity=0.335 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
-.+++.|++|+|||||++.+.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 458999999999999999998764
No 488
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.38 E-value=0.14 Score=51.33 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37999999999999999998754
No 489
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.30 E-value=0.17 Score=45.41 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
-.++++|+.|+|||||+.+|....
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999998743
No 490
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.29 E-value=0.094 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
.++++|+.|||||||++.|.+..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999987653
No 491
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.24 E-value=0.22 Score=43.54 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
..|++.|..||||||+++.|....
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 578999999999999999997654
No 492
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.22 E-value=0.24 Score=42.55 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=23.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHhhhhh
Q psy15217 11 PHINVGTIGHVDHGKTTLTAAIATVLSK 38 (396)
Q Consensus 11 ~~~~i~i~G~~~~GKSTLi~~L~~~~~~ 38 (396)
...-|++.|..||||||++..|......
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3467999999999999999999766543
No 493
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.12 E-value=0.22 Score=41.97 Aligned_cols=24 Identities=42% Similarity=0.336 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
..+.+.|.+|+|||||+..+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999987654
No 494
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=90.05 E-value=0.43 Score=34.69 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=42.5
Q ss_pred EeeEEecCCEEEEe-ecCCceeEEEEEEE-ecceeeCee-ecCCeEEEEecccCccCCCCCeEEe
Q psy15217 235 ERGIVRVGEELEII-GIKDTVKTTCTGVE-MFRKLLDQG-QAGDNIGLLLRGTKREDVERGQVLA 296 (396)
Q Consensus 235 ~~G~l~~g~~v~~~-p~~~~~~~~v~si~-~~~~~~~~a-~~G~~v~l~l~~~~~~~i~~G~vl~ 296 (396)
....+.+||.|.+. |.+.....+|..+. ...++++.| .||+.+.+.+. ..+..|++|-
T Consensus 26 ~rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~~G~~i~~A~~~~~~v~i~~~----~~~~~~dilR 86 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARHPLQIVKFKVK----RPLFPYNMMR 86 (89)
T ss_dssp ESSCBCTTCEEEEESTTSCCEEEECCCEEETTSCEESCBCSTTCEEEEECS----SCCCTTCEEE
T ss_pred EcCCcCCCCEEEEEcCCCCcEEEEeHHeEcCCCCEeeEcCCCCeEEEEECC----CCCCCCCEEE
Confidence 36788999999876 54435667777886 346789998 89999999764 2466777764
No 495
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=89.85 E-value=0.21 Score=46.63 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=23.1
Q ss_pred cCCCCeeEEEEEeCCCCChHHHHHHHH
Q psy15217 7 ERTKPHINVGTIGHVDHGKTTLTAAIA 33 (396)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSTLi~~L~ 33 (396)
.......+|.++|..+|||||++.++-
T Consensus 4 ~~~~~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 4 GSGIHIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp CCCCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCceeEEEECCCCCcHHHHHHHHH
Confidence 344567899999999999999999984
No 496
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.85 E-value=0.22 Score=43.88 Aligned_cols=24 Identities=38% Similarity=0.324 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhh
Q psy15217 12 HINVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 12 ~~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
...+.+.|++|+|||||+..|.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999999764
No 497
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.78 E-value=0.18 Score=42.80 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATV 35 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~ 35 (396)
..|+|+|.+|+|||||...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999754
No 498
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.66 E-value=0.72 Score=44.37 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=20.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVLSK 38 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~~~ 38 (396)
-+.+.|.+|+|||||+-++......
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHH
Confidence 5789999999999999988765443
No 499
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.58 E-value=0.26 Score=42.78 Aligned_cols=24 Identities=21% Similarity=-0.017 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhh
Q psy15217 13 INVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 13 ~~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
-.++++|++|+|||||+.++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999988886543
No 500
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.58 E-value=0.42 Score=46.84 Aligned_cols=23 Identities=9% Similarity=-0.126 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q psy15217 14 NVGTIGHVDHGKTTLTAAIATVL 36 (396)
Q Consensus 14 ~i~i~G~~~~GKSTLi~~L~~~~ 36 (396)
-+.+.|.+|+|||||+-++....
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHH
T ss_pred EEEEeecCCCCchHHHHHHHHHH
Confidence 46889999999999999987654
Done!