BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1522
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z15|A Chain A, Crystal Structure Of Human Tob1 Protein
pdb|2Z15|B Chain B, Crystal Structure Of Human Tob1 Protein
pdb|2Z15|C Chain C, Crystal Structure Of Human Tob1 Protein
pdb|2Z15|D Chain D, Crystal Structure Of Human Tob1 Protein
Length = 130
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 84/124 (67%), Gaps = 24/124 (19%)
Query: 2 MHVEIQVALNFVISYLYNKLPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNKAL 61
M +EIQVALNF+ISYLYNKLPRRRVNIFGEELE+ LK+K+ GHWY
Sbjct: 8 MQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWY--------------- 52
Query: 62 KEKFSGHWYPGKPLKGSAFRCLKTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVDP 121
P KP KGS FRC+ G+ +DPV+E A++ESG+ I DV NLP +L+VW+DP
Sbjct: 53 ---------PEKPYKGSGFRCIHIGEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDP 103
Query: 122 GEVT 125
EV+
Sbjct: 104 FEVS 107
>pdb|2D5R|B Chain B, Crystal Structure Of A Tob-Hcaf1 Complex
Length = 116
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 84/124 (67%), Gaps = 24/124 (19%)
Query: 2 MHVEIQVALNFVISYLYNKLPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNKAL 61
M +EIQVALNF+ISYLYNKLPRRRVNIFGEELE+ LK+K+ GHWY
Sbjct: 2 MQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWY--------------- 46
Query: 62 KEKFSGHWYPGKPLKGSAFRCLKTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVDP 121
P KP KGS FRC+ G+ +DPV+E A++ESG+ I DV NLP +L+VW+DP
Sbjct: 47 ---------PEKPYKGSGFRCIHIGEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDP 97
Query: 122 GEVT 125
EV+
Sbjct: 98 FEVS 101
>pdb|3DJU|B Chain B, Crystal Structure Of Human Btg2
Length = 122
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 54 SSTNNKALKEKFSGHWYPGKPLKGSAFRCLKTGDPIDPVLEIAARESGVAIQDVLENLPS 113
S +AL E + HW+P KP KGS +RC++ +DP++ A + G++ + + LPS
Sbjct: 33 SGALQEALTEHYKHHWFPEKPSKGSGYRCIRINHKMDPIISRVASQIGLSQPQLHQLLPS 92
Query: 114 ELAVWVDPGEVT 125
EL +WVDP EV+
Sbjct: 93 ELTLWVDPYEVS 104
>pdb|3E9V|A Chain A, Crystal Structure Of Human B-Cell Translocation Gene 2
(Btg2)
Length = 120
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 54 SSTNNKALKEKFSGHWYPGKPLKGSAFRCLKTGDPIDPVLEIAARESGVAIQDVLENLPS 113
S +AL E + HW+P KP KGS +RC++ DP++ A + G++ + + LPS
Sbjct: 32 SGALQEALTEHYKHHWFPEKPSKGSGYRCIRINHKXDPIISRVASQIGLSQPQLHQLLPS 91
Query: 114 ELAVWVDPGEVT 125
EL +WVDP EV+
Sbjct: 92 ELTLWVDPYEVS 103
>pdb|3DJN|B Chain B, Crystal Structure Of Mouse Tis21
Length = 118
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 54 SSTNNKALKEKFSGHWYPGKPLKGSAFRCLKTGDPIDPVLEIAARESGVAIQDVLENLPS 113
S AL + + HW+P KP KGS +RC++ +DP++ A + G++ + LPS
Sbjct: 32 SRALQDALTDHYKHHWFPEKPSKGSGYRCIRINHKMDPIISKVASQIGLSQPQLHRLLPS 91
Query: 114 ELAVWVDPGEVT 125
EL +WVDP EV+
Sbjct: 92 ELTLWVDPYEVS 103
>pdb|2Z4R|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|B Chain B, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|C Chain C, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4S|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
Length = 440
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 83 LKTGDPIDPVLEIAARESGVAIQDVLEN 110
+K DPID ++EI A+ +GV +++L N
Sbjct: 338 VKAMDPIDELIEIVAKVTGVPREEILSN 365
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 118 WVDPGEVTG-DPIDPVLEIAARESGVAIQDVLEN 150
++ P V DPID ++EI A+ +GV +++L N
Sbjct: 332 FIKPNRVKAMDPIDELIEIVAKVTGVPREEILSN 365
>pdb|3UMC|A Chain A, Crystal Structure Of The L-2-Haloacid Dehalogenase Pa0810
pdb|3UMC|B Chain B, Crystal Structure Of The L-2-Haloacid Dehalogenase Pa0810
pdb|3UMC|C Chain C, Crystal Structure Of The L-2-Haloacid Dehalogenase Pa0810
pdb|3UMC|D Chain D, Crystal Structure Of The L-2-Haloacid Dehalogenase Pa0810
Length = 254
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 29 FGEELEKALKEKFSGHWYPGKPLKDSSTNNKALKEKF 65
FG L++AL ++ +G W+ +P D+ ALK +
Sbjct: 100 FGLALDEALLQRITGFWHRLRPWPDTLAGXHALKADY 136
>pdb|1DEQ|A Chain A, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|D Chain D, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|N Chain N, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|Q Chain Q, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 390
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 42 SGHWYPGKPLKDSS-TNNKALKEKFS-GHWYPGKPLKGSA 79
SG W PG+P S+ T N E S G W PG+P GSA
Sbjct: 291 SGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSA 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,724,252
Number of Sequences: 62578
Number of extensions: 461698
Number of successful extensions: 1086
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 73
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)