Query psy1522
Match_columns 339
No_of_seqs 201 out of 253
Neff 3.5
Searched_HMMs 46136
Date Sat Aug 17 00:17:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4006|consensus 100.0 7.8E-47 1.7E-51 359.9 13.2 244 2-317 1-280 (311)
2 smart00099 btg1 tob/btg1 famil 100.0 7.3E-46 1.6E-50 309.9 11.6 102 2-127 1-104 (108)
3 PF07742 BTG: BTG family; Int 100.0 6.2E-44 1.3E-48 301.1 7.2 102 2-127 1-106 (118)
4 KOG4006|consensus 99.7 4.3E-18 9.4E-23 163.5 0.5 101 1-127 65-169 (311)
5 PF07742 BTG: BTG family; Int 99.4 5.3E-14 1.2E-18 119.4 3.4 53 117-173 60-115 (118)
6 smart00099 btg1 tob/btg1 famil 99.4 3E-13 6.4E-18 114.0 5.0 47 116-168 59-108 (108)
7 PF02159 Oest_recep: Oestrogen 74.4 3.2 7E-05 37.2 3.2 40 283-326 69-108 (139)
8 KOG0260|consensus 68.0 40 0.00087 39.7 10.4 13 304-316 1568-1580(1605)
9 PF07145 PAM2: Ataxin-2 C-term 62.6 4.3 9.4E-05 25.0 1.1 12 288-299 5-16 (18)
10 KOG0260|consensus 57.6 56 0.0012 38.6 9.2 17 189-205 1472-1488(1605)
11 cd00153 RalGDS_RA Ubiquitin do 45.1 13 0.00028 31.1 1.5 37 77-113 15-58 (87)
12 PF05534 HicB: HicB family; I 41.4 28 0.0006 25.8 2.6 37 70-108 11-47 (51)
13 PF04405 ScdA_N: Domain of Unk 33.1 33 0.00072 26.0 2.0 21 91-111 32-52 (56)
14 PF08671 SinI: Anti-repressor 30.1 40 0.00087 23.0 1.8 20 92-111 7-26 (30)
15 PF14437 MafB19-deam: MafB19-l 29.9 78 0.0017 28.7 4.1 34 112-147 99-132 (146)
16 COG2442 Uncharacterized conser 29.7 96 0.0021 25.2 4.2 43 69-112 12-54 (79)
17 PF14437 MafB19-deam: MafB19-l 28.8 23 0.0005 32.0 0.6 27 138-165 83-111 (146)
18 PF15508 NAAA-beta: beta subun 28.3 3.1E+02 0.0067 22.2 7.0 39 3-41 26-64 (95)
19 PF06228 ChuX_HutX: Haem utili 27.9 67 0.0014 28.6 3.3 26 96-121 1-26 (141)
20 cd03026 AhpF_NTD_C TRX-GRX-lik 22.3 64 0.0014 25.7 2.0 34 112-145 13-47 (89)
21 cd01768 RA RA (Ras-associating 21.9 1E+02 0.0022 23.8 2.9 42 70-118 5-48 (87)
22 PF00788 RA: Ras association ( 21.8 58 0.0013 24.8 1.6 49 73-127 11-62 (93)
23 COG0560 SerB Phosphoserine pho 21.6 3.5E+02 0.0075 25.0 6.8 71 76-146 90-162 (212)
24 KOG3784|consensus 21.4 3.8E+02 0.0083 28.2 7.7 95 20-125 63-165 (407)
25 COG3112 Uncharacterized protei 21.1 80 0.0017 27.9 2.4 38 88-127 38-75 (121)
26 PF14941 OAF: Transcriptional 20.1 43 0.00094 32.6 0.6 18 68-85 194-219 (240)
No 1
>KOG4006|consensus
Probab=100.00 E-value=7.8e-47 Score=359.95 Aligned_cols=244 Identities=42% Similarity=0.660 Sum_probs=191.0
Q ss_pred cHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHhhhccCCCCCCCCCCCccee
Q psy1522 2 MHVEIQVALNFVISYLYNKLPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNKALKEKFSGHWYPGKPLKGSAFR 81 (339)
Q Consensus 2 M~~EI~aAVnFl~~~L~~klprrrv~~F~e~L~~~L~erf~~~w~~~~~~~~~~~le~~L~e~f~~HWyP~~P~kGsayR 81 (339)
|++||++||||||+|||+|||||||+||+|||+++|++||++ ||||++|.|||+||
T Consensus 1 m~~ei~valnfvisylynklprrrv~ifgeele~~l~~k~~~------------------------hwypekp~kgs~~r 56 (311)
T KOG4006|consen 1 MQLEIQVALNFVISYLYNKLPRRRVNIFGEELERLLKKKFEG------------------------HWYPEKPKKGSGFR 56 (311)
T ss_pred CcchHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhhcC------------------------ccCCCCCCCccccc
Confidence 999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhCCCHHHHHhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHcC-CCHHHhhhcCCCCceeeec
Q psy1522 82 CLKTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVTGDPIDPVLEIAARESG-VAIQDVLENLPSELAVWVD 160 (339)
Q Consensus 82 CIri~~~~Dpvl~~AA~esGl~~~dL~~~LP~EltlWVDPgeVSyR~~Dpvl~kAa~ESG-L~~~dl~l~LP~ELTlWVD 160 (339)
||+ +.+|++++.||+|+|+.++||+++||.++.+||||++|++| . +|.| ++. +|+|
T Consensus 57 cih--~~~d~vme~eiaeag~fisdvlrnlp~~lsv~idpFevslq-------i--~ekg~yK~------------hw~~ 113 (311)
T KOG4006|consen 57 CIH--ETVDPVMESEIAEAGVFISDVLRNLPKLLSVWIDPFEVSLQ-------I--GEKGAYKV------------HWFP 113 (311)
T ss_pred hhc--ccccHHHHHHHHHhcCCHHHHHHhCcchhheeecchhhHHh-------h--hhccceee------------eecC
Confidence 999 88999999999999999999999999999999999999999 5 5555 222 2443
Q ss_pred CcccccCCCCcccCCCccccccccccccccCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchh
Q psy1522 161 PGEVRGEREIATADPSLHAAAMDREVHKTFNPEARVFRPVEVCLASLSLNGEERSASPSPTKGSPTFLPRSTAPLTFTTA 240 (339)
Q Consensus 161 P~EVsGE~~~~~~~a~~~~~~~d~E~sk~i~pea~~F~P~~~~~~~~s~~p~~~~as~s~~spsP~f~~~~~~p~tf~~~ 240 (339)
=-+-+| +.+..++|+ +.|||++|||+++.. ..++.+..++|+++.+..+|++|++.
T Consensus 114 d~p~kG----------------~~~rcirIn---~~~npdaq~~~~i~~-----~~ss~s~~~lPtelt~wvdP~evs~r 169 (311)
T KOG4006|consen 114 DKPSKG----------------QAYRCIRIN---KSFNPDAQVFRPIGA-----SNSSVSNLGLPTELTLWVDPIEVSTR 169 (311)
T ss_pred CCCCCC----------------chhhhHHHh---hccCCchhhhhcccc-----cccchhccCCCcccccccCceEEEee
Confidence 222111 114445554 667777777776655 33344456688999888888888755
Q ss_pred h-------------------------h----hhccccccccccCccccC-----CCCCCchhHHHHHHHHHhhhccCCC-
Q psy1522 241 S-------------------------F----AQTKFGSTKLKTNSKRTN-----RMSPTEFSNYIKQRALLQQQHNNHP- 285 (339)
Q Consensus 241 t-------------------------F----a~tkFgsTK~~s~~kr~~-----~~spt~~~~~~k~~~~~~~~h~~~~- 285 (339)
+ | +.| |+++|..+-++|.. +|+|+++++++++.+++|++|..++
T Consensus 170 ~~~~~gek~~~~~~a~s~~g~~~p~~~~~k~~~a-~~s~s~~~~sg~s~s~~~~~~~~~s~p~t~~~sp~~q~~~~~~~~ 248 (311)
T KOG4006|consen 170 SFPIGGEKNNAALVASSPLGAEYPDEFVRKATSA-LDSCSSQTLSGRSSSSESYSKSPASPPPTMPVSPYQQQQQLSSAS 248 (311)
T ss_pred ecccCccccchhheecccccccCchHHHHHHHhh-ccchhhhhhcCccCchhhcccCcCCCCCCCCcChHHHHHhhcCCC
Confidence 2 2 222 56666665556655 6889999999999999998887765
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCCCCCCcc
Q psy1522 286 QPSLPPTLSNFLHSPGAQSPHYSPNTPSGNTA 317 (339)
Q Consensus 286 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (339)
.|+.-+....=++.-|.-+|+|.|+.|-|+..
T Consensus 249 sPs~~~~~~~~~~gq~s~~~~~~p~~~~~ys~ 280 (311)
T KOG4006|consen 249 SPSATYSPRKKMYGQVSYTPGFFPGVPFGYSN 280 (311)
T ss_pred CCcccccchhhhccccCCCCCCCCCCCcCccc
Confidence 45433333333777888999999999877653
No 2
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=100.00 E-value=7.3e-46 Score=309.92 Aligned_cols=102 Identities=54% Similarity=0.964 Sum_probs=101.1
Q ss_pred cHHHHHHHHHHHHHHH--hccCChhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHhhhccCCCCCCCCCCCcc
Q psy1522 2 MHVEIQVALNFVISYL--YNKLPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNKALKEKFSGHWYPGKPLKGSA 79 (339)
Q Consensus 2 M~~EI~aAVnFl~~~L--~~klprrrv~~F~e~L~~~L~erf~~~w~~~~~~~~~~~le~~L~e~f~~HWyP~~P~kGsa 79 (339)
|++||++|||||++|| ++|||++++++|+++|+++|.+||++ ||||++|.||||
T Consensus 1 M~~EI~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~------------------------HWyP~~P~kGqa 56 (108)
T smart00099 1 MKLEIAAAVNFITSLLRKHNKLSKRRVEIFAEKLTRLLKEKYKN------------------------HWYPEKPYKGSG 56 (108)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhc------------------------CCCCCCCCCCcc
Confidence 9999999999999999 89999999999999999999999999 999999999999
Q ss_pred eeEEecCCCCCHHHHHHHHHhCCCHHHHHhcCCCccEEEEcCCCCCCC
Q psy1522 80 FRCLKTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVTGD 127 (339)
Q Consensus 80 yRCIri~~~~Dpvl~~AA~esGl~~~dL~~~LP~EltlWVDPgeVSyR 127 (339)
||||+||+++||+|++||+++||+++||.++||+||||||||||||||
T Consensus 57 yRCIrIn~~~Dp~l~~Aa~~sGl~~~~l~~~LP~eltiwvDP~eVs~R 104 (108)
T smart00099 57 FRCIRINQKVDPVIEQACKESGLDIDDLGGNLPKELTLWVDPFEVSYR 104 (108)
T ss_pred eEEEEECCcCCHHHHHHHHHhCCCHHHHHHhCCcccEEEECCCEEEEe
Confidence 999999999999999999999999999999999999999999999999
No 3
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=100.00 E-value=6.2e-44 Score=301.09 Aligned_cols=102 Identities=55% Similarity=1.003 Sum_probs=92.7
Q ss_pred cHHHHHHHHHHHHHHHhcc--CChhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHhhhccCCCCCCCCCCCcc
Q psy1522 2 MHVEIQVALNFVISYLYNK--LPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNKALKEKFSGHWYPGKPLKGSA 79 (339)
Q Consensus 2 M~~EI~aAVnFl~~~L~~k--lprrrv~~F~e~L~~~L~erf~~~w~~~~~~~~~~~le~~L~e~f~~HWyP~~P~kGsa 79 (339)
|++||++|||||++||+++ ||++++++|+++|+++|.+||++ ||||++|.||||
T Consensus 1 M~~EI~~av~Fl~~~l~~~~~l~~~~~~~F~~~L~~~L~~ry~~------------------------HW~P~~P~kGsa 56 (118)
T PF07742_consen 1 MKTEIAAAVNFLTRLLYNKGRLPRRQVDRFAEELENLLCERYKG------------------------HWYPENPSKGSA 56 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-B-HHHHHHHHHHHHHHHHHHHTT------------------------S--TTSTTTTHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC------------------------CCCCCCCCCCCc
Confidence 9999999999999999987 99999999999999999999999 999999999999
Q ss_pred eeEEecC--CCCCHHHHHHHHHhCCCHHHHHhcCCCccEEEEcCCCCCCC
Q psy1522 80 FRCLKTG--DPIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVTGD 127 (339)
Q Consensus 80 yRCIri~--~~~Dpvl~~AA~esGl~~~dL~~~LP~EltlWVDPgeVSyR 127 (339)
||||+|| +++||+|++||.++||+++||.++||.||||||||||||||
T Consensus 57 yRcIrin~~~~~Dp~l~~Aa~~sgl~~~~l~~~LP~eltlWvDPgeVs~R 106 (118)
T PF07742_consen 57 YRCIRINPGHKMDPVLEQAAKESGLSYEDLRSLLPRELTLWVDPGEVSYR 106 (118)
T ss_dssp HH-EEES--SSB-HHHHHHHHHTT--HHHHHHHS-TTEEEEEETTEEEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHhCCCHHHHHHhcchhcEEEECCCEEEEE
Confidence 9999998 99999999999999999999999999999999999999999
No 4
>KOG4006|consensus
Probab=99.68 E-value=4.3e-18 Score=163.55 Aligned_cols=101 Identities=33% Similarity=0.586 Sum_probs=87.0
Q ss_pred CcHHHHHHHHHHHHHHHhc--cCChhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHhhhccCCCCCCCCCCCc
Q psy1522 1 MMHVEIQVALNFVISYLYN--KLPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNKALKEKFSGHWYPGKPLKGS 78 (339)
Q Consensus 1 ~M~~EI~aAVnFl~~~L~~--klprrrv~~F~e~L~~~L~erf~~~w~~~~~~~~~~~le~~L~e~f~~HWyP~~P~kGs 78 (339)
+|..||++||-||.++|++ ++-..+|+.|...|...|.++|+. ||+||+|+||+
T Consensus 65 vme~eiaeag~fisdvlrnlp~~lsv~idpFevslqi~ekg~yK~------------------------hw~~d~p~kG~ 120 (311)
T KOG4006|consen 65 VMESEIAEAGVFISDVLRNLPKLLSVWIDPFEVSLQIGEKGAYKV------------------------HWFPDKPSKGQ 120 (311)
T ss_pred HHHHHHHHhcCCHHHHHHhCcchhheeecchhhHHhhhhccceee------------------------eecCCCCCCCc
Confidence 4899999999999999975 688899999999999999988888 99999999999
Q ss_pred ceeEEecCCCCC--HHHHHHHHHhCCCHHHHHhcCCCccEEEEcCCCCCCC
Q psy1522 79 AFRCLKTGDPID--PVLEIAARESGVAIQDVLENLPSELAVWVDPGEVTGD 127 (339)
Q Consensus 79 ayRCIri~~~~D--pvl~~AA~esGl~~~dL~~~LP~EltlWVDPgeVSyR 127 (339)
+||||+|+..+| +.+.+++.+++.+...+ .||.|+|+||||.+||||
T Consensus 121 ~~rcirIn~~~npdaq~~~~i~~~~ss~s~~--~lPtelt~wvdP~evs~r 169 (311)
T KOG4006|consen 121 AYRCIRINKSFNPDAQVFRPIGASNSSVSNL--GLPTELTLWVDPIEVSTR 169 (311)
T ss_pred hhhhHHHhhccCCchhhhhcccccccchhcc--CCCcccccccCceEEEee
Confidence 999999987666 45555666666665555 689999999999999998
No 5
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=99.44 E-value=5.3e-14 Score=119.39 Aligned_cols=53 Identities=49% Similarity=0.904 Sum_probs=42.1
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHcCCCHHHhhhcCCCCceeeecCcccc---cCCCCccc
Q psy1522 117 VWVDPGEVTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVR---GEREIATA 173 (339)
Q Consensus 117 lWVDPgeVSyR~~Dpvl~kAa~ESGL~~~dl~l~LP~ELTlWVDP~EVs---GE~~~~~~ 173 (339)
|-|++ ..++||+|++||.++|++++++...||+|||+||||+||| ||+|.++|
T Consensus 60 Irin~----~~~~Dp~l~~Aa~~sgl~~~~l~~~LP~eltlWvDPgeVs~R~ge~g~~~v 115 (118)
T PF07742_consen 60 IRINP----GHKMDPVLEQAAKESGLSYEDLRSLLPRELTLWVDPGEVSYRIGEKGSICV 115 (118)
T ss_dssp EEES------SSB-HHHHHHHHHTT--HHHHHHHS-TTEEEEEETTEEEEEESTTS-EEE
T ss_pred EEEcC----CCCCCHHHHHHHHHhCCCHHHHHHhcchhcEEEECCCEEEEEEcCCCceEE
Confidence 46777 6789999999999999999999999999999999999999 99995544
No 6
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=99.39 E-value=3e-13 Score=113.99 Aligned_cols=47 Identities=49% Similarity=0.897 Sum_probs=43.4
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHcCCCHHHhhhcCCCCceeeecCcccc---cCC
Q psy1522 116 AVWVDPGEVTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVR---GER 168 (339)
Q Consensus 116 tlWVDPgeVSyR~~Dpvl~kAa~ESGL~~~dl~l~LP~ELTlWVDP~EVs---GE~ 168 (339)
.|-|+ +++||+|++||.+|||++.+|...||+|||+||||+||| ||+
T Consensus 59 CIrIn------~~~Dp~l~~Aa~~sGl~~~~l~~~LP~eltiwvDP~eVs~R~ge~ 108 (108)
T smart00099 59 CIRIN------QKVDPVIEQACKESGLDIDDLGGNLPKELTLWVDPFEVSYRIGEK 108 (108)
T ss_pred EEEEC------CcCCHHHHHHHHHhCCCHHHHHHhCCcccEEEECCCEEEEeecCC
Confidence 36676 799999999999999999999999999999999999999 774
No 7
>PF02159 Oest_recep: Oestrogen receptor; InterPro: IPR001292 Steroid or nuclear hormone receptors (4A nuclear receptor, NRs) constitute an important superfamily of transcription regulators that are involved in widely diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members of the superfamily include the steroid hormone receptors and receptors for thyroid hormone, retinoids, 1,25-dihydroxy-vitamin D3 and a variety of other ligands []. The proteins function as dimeric molecules in nuclei to regulate the transcription of target genes in a ligand-responsive manner [, ]. In addition to C-terminal ligand-binding domains, these nuclear receptors contain a highly-conserved, N-terminal zinc-finger that mediates specific binding to target DNA sequences, termed ligand-responsive elements. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes, hormone resistance syndromes, etc. While several NRs act as ligand-inducible transcription factors, many do not yet have a defined ligand and are accordingly termed 'orphan' receptors. During the last decade, more than 300 NRs have been described, many of which are orphans, which cannot easily be named due to current nomenclature confusions in the literature. However, a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The oestrogen receptors (ERs) are steroid or nuclear hormone receptors that act as transcription regulators involved in diverse physiological functions. Oestrogen receptors function as dimeric molecules in nuclei to regulate the transcription of target genes in a ligand-responsive manner. The ER consists of three functional and structural domains: an N-terminal modulatory domain, a highly conserved DNA-binding domain that recognises specific sequences (IPR001628 from INTERPRO), and a C-terminal ligand-binding domain (IPR000536 from INTERPRO). The N-terminal modulatory domain spans the first 180 residues and contains the activation function 1 (AF1) region. Nuclear receptors differ considerably with respect to AF1 activity and regulation, as it is a poorly conserved region []. There is another activation function region, namely AF2, which resides in the C-terminal end of the ligand-binding domain. Transcription activation is facilitated by both AF1 and AF2, which appear to act synergistically in the ER complex [, ]. For example, the ER can recruit TIF2 (transcription intermediary factor 2) via the AF1 and AF2 regions, whose synergistic action results in the activation of transcription.; GO: 0003677 DNA binding, 0005496 steroid binding, 0030284 estrogen receptor activity, 0006355 regulation of transcription, DNA-dependent, 0043401 steroid hormone mediated signaling pathway, 0005634 nucleus
Probab=74.40 E-value=3.2 Score=37.23 Aligned_cols=40 Identities=38% Similarity=0.700 Sum_probs=33.7
Q ss_pred CCCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCccchh
Q psy1522 283 NHPQPSLPPTLSNFLHSPGAQSPHYSPNTPSGNTARSLSPSYYF 326 (339)
Q Consensus 283 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (339)
+++.||||| |+|.+|-|-|||--|.+++-..|.-+|.-+|
T Consensus 69 ~~ssPQLSP----flH~~~qQvpyYLe~e~~~~~~rea~~t~~Y 108 (139)
T PF02159_consen 69 LPSSPQLSP----FLHPPGQQVPYYLENEQGSYGVREASPTPFY 108 (139)
T ss_pred ecCCCccCc----cccCccccCceecccCCCcccccccCCCccc
Confidence 456667777 8999999999999999999999988776555
No 8
>KOG0260|consensus
Probab=68.02 E-value=40 Score=39.70 Aligned_cols=13 Identities=62% Similarity=0.984 Sum_probs=5.9
Q ss_pred CCCCCCCCCCCCc
Q psy1522 304 SPHYSPNTPSGNT 316 (339)
Q Consensus 304 ~~~~~~~~~~~~~ 316 (339)
||.|||..||=.|
T Consensus 1568 spsysptspsys~ 1580 (1605)
T KOG0260|consen 1568 SPSYSPTSPSYST 1580 (1605)
T ss_pred CCCCCCCCCCccC
Confidence 4444444444433
No 9
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=62.63 E-value=4.3 Score=25.01 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=9.7
Q ss_pred CCCCCccccccC
Q psy1522 288 SLPPTLSNFLHS 299 (339)
Q Consensus 288 ~~~p~~~~~~~~ 299 (339)
+|.|+|+|||.+
T Consensus 5 ~LNp~A~eFvP~ 16 (18)
T PF07145_consen 5 KLNPNAPEFVPS 16 (18)
T ss_dssp SSSTTSSSS-TT
T ss_pred ccCCCCccccCC
Confidence 799999999964
No 10
>KOG0260|consensus
Probab=57.57 E-value=56 Score=38.59 Aligned_cols=17 Identities=12% Similarity=0.516 Sum_probs=7.8
Q ss_pred ccCCCCccccccccccc
Q psy1522 189 TFNPEARVFRPVEVCLA 205 (339)
Q Consensus 189 ~i~pea~~F~P~~~~~~ 205 (339)
+.+|-..++.|-.-..+
T Consensus 1472 ~~sptspsysptspsys 1488 (1605)
T KOG0260|consen 1472 SYSPTSPSYSPTSPSYS 1488 (1605)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 34444455555444433
No 11
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins. This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=45.11 E-value=13 Score=31.14 Aligned_cols=37 Identities=16% Similarity=0.381 Sum_probs=30.2
Q ss_pred CcceeEEec--CCCCCHHHHHHHHHhCCCHH-----HHHhcCCC
Q psy1522 77 GSAFRCLKT--GDPIDPVLEIAARESGVAIQ-----DVLENLPS 113 (339)
Q Consensus 77 GsayRCIri--~~~~Dpvl~~AA~esGl~~~-----dL~~~LP~ 113 (339)
|.-|+||.+ ++++.-+|.+|-..-|++-+ +|.+.||.
T Consensus 15 gn~YKSIlltsqDktP~VI~ral~Khnl~~~~~~~Y~L~Q~Lp~ 58 (87)
T cd00153 15 GNLYKSILLTSQDKAPQVIRRAMEKHNLESEVAEDYELVQVLPG 58 (87)
T ss_pred cceEEEEEEecCCcCHHHHHHHHHHhCCCcCCccceEEEEEcCC
Confidence 999999987 58999999999999999754 35566773
No 12
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches [].
Probab=41.44 E-value=28 Score=25.84 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=29.4
Q ss_pred CCCCCCCCcceeEEecCCCCCHHHHHHHHHhCCCHHHHH
Q psy1522 70 YPGKPLKGSAFRCLKTGDPIDPVLEIAARESGVAIQDVL 108 (339)
Q Consensus 70 yP~~P~kGsayRCIri~~~~Dpvl~~AA~esGl~~~dL~ 108 (339)
-|++|.+|+ --||+...+..-+..+|.+.|++.+++.
T Consensus 11 ~p~k~~sg~--~~lRi~~~Lh~~l~~~A~~~gvSlN~~I 47 (51)
T PF05534_consen 11 EPEKPYSGK--FNLRIPPELHRALAEAAAAEGVSLNQWI 47 (51)
T ss_pred CCCCCCCCc--eeeeCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 477888864 4577777777888889999999999885
No 13
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=33.07 E-value=33 Score=26.01 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCHHHHHhcC
Q psy1522 91 PVLEIAARESGVAIQDVLENL 111 (339)
Q Consensus 91 pvl~~AA~esGl~~~dL~~~L 111 (339)
..|..||++.||+.++|++-|
T Consensus 32 ~~L~eA~~~~~ld~~~vl~~L 52 (56)
T PF04405_consen 32 RSLEEACEEKGLDPEEVLEEL 52 (56)
T ss_pred chHHHHHHHcCCCHHHHHHHH
Confidence 569999999999999987655
No 14
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=30.08 E-value=40 Score=23.04 Aligned_cols=20 Identities=35% Similarity=0.424 Sum_probs=13.9
Q ss_pred HHHHHHHHhCCCHHHHHhcC
Q psy1522 92 VLEIAARESGVAIQDVLENL 111 (339)
Q Consensus 92 vl~~AA~esGl~~~dL~~~L 111 (339)
.|.+-|+++||+.+|+++.|
T Consensus 7 ~Li~eA~~~Gls~eeir~FL 26 (30)
T PF08671_consen 7 ELIKEAKESGLSKEEIREFL 26 (30)
T ss_dssp HHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 46677889999999987654
No 15
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=29.93 E-value=78 Score=28.70 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=26.2
Q ss_pred CCccEEEEcCCCCCCCCCCHHHHHHHHHcCCCHHHh
Q psy1522 112 PSELAVWVDPGEVTGDPIDPVLEIAARESGVAIQDV 147 (339)
Q Consensus 112 P~EltlWVDPgeVSyR~~Dpvl~kAa~ESGL~~~dl 147 (339)
+.+++|||| ..|| ..+=..|..++.+.||+...+
T Consensus 99 g~~~tm~Vd-r~vC-~~C~~~i~~~a~~lGl~~L~I 132 (146)
T PF14437_consen 99 GRSMTMYVD-RDVC-GYCGGDIPSMAEKLGLKSLTI 132 (146)
T ss_pred CCeEEEEEC-cccc-hHHHHHHHHHHHHcCCCeEEE
Confidence 999999999 6665 334488888888888876553
No 16
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=29.69 E-value=96 Score=25.22 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=34.7
Q ss_pred CCCCCCCCCcceeEEecCCCCCHHHHHHHHHhCCCHHHHHhcCC
Q psy1522 69 WYPGKPLKGSAFRCLKTGDPIDPVLEIAARESGVAIQDVLENLP 112 (339)
Q Consensus 69 WyP~~P~kGsayRCIri~~~~Dpvl~~AA~esGl~~~dL~~~LP 112 (339)
|---.|.+..|-=||+ |.++.....--..++|++.+|+++.+|
T Consensus 12 ~I~~~P~i~gGkP~I~-GtRI~V~~Il~~l~~G~s~eeil~dyp 54 (79)
T COG2442 12 RIVITPGICGGKPCIR-GTRIPVWDILEMLAAGESIEEILADYP 54 (79)
T ss_pred eeEeCCcccCCcceEe-CceecHHHHHHHHHCCCCHHHHHHhCC
Confidence 4456788888999999 777776666666669999999999888
No 17
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=28.85 E-value=23 Score=32.02 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=17.9
Q ss_pred HHcC-CCHHHhhhcC-CCCceeeecCcccc
Q psy1522 138 RESG-VAIQDVLENL-PSELAVWVDPGEVR 165 (339)
Q Consensus 138 ~ESG-L~~~dl~l~L-P~ELTlWVDP~EVs 165 (339)
+|.+ +.-.+-...+ +++|||||| ..||
T Consensus 83 AE~~aiqqA~d~G~~~g~~~tm~Vd-r~vC 111 (146)
T PF14437_consen 83 AEAGAIQQAYDAGKTVGRSMTMYVD-RDVC 111 (146)
T ss_pred HHHHHHHHHHHhcCccCCeEEEEEC-cccc
Confidence 5555 2222222334 899999999 9999
No 18
>PF15508 NAAA-beta: beta subunit of N-acylethanolamine-hydrolyzing acid amidase
Probab=28.27 E-value=3.1e+02 Score=22.21 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHh
Q psy1522 3 HVEIQVALNFVISYLYNKLPRRRVNIFGEELEKALKEKF 41 (339)
Q Consensus 3 ~~EI~aAVnFl~~~L~~klprrrv~~F~e~L~~~L~erf 41 (339)
+.||++.++++..++..-+|...+-.+...+...|...|
T Consensus 26 k~~i~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~ 64 (95)
T PF15508_consen 26 KDEIRELIEVLKDLLQSFVPSGKVLDFVDKLLPHLLRYL 64 (95)
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhC
Confidence 568888888888887776777566666666665554443
No 19
>PF06228 ChuX_HutX: Haem utilisation ChuX/HutX; InterPro: IPR010413 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2OVI_A 2PH0_B 3FM2_B 2HQV_A.
Probab=27.95 E-value=67 Score=28.63 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=22.0
Q ss_pred HHHHhCCCHHHHHhcCCCccEEEEcC
Q psy1522 96 AARESGVAIQDVLENLPSELAVWVDP 121 (339)
Q Consensus 96 AA~esGl~~~dL~~~LP~EltlWVDP 121 (339)
+|++.|++..|+.++||.++...++-
T Consensus 1 iA~~lgvse~ev~~~lp~~~~~~~~g 26 (141)
T PF06228_consen 1 IAKQLGVSELEVLAALPEEMVTFLPG 26 (141)
T ss_dssp HHHHTTS-HHHHHHTSTTTTEEEEEG
T ss_pred ChhHhCcCHHHHHHhCCHHHEEEccH
Confidence 58899999999999999999888874
No 20
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=22.29 E-value=64 Score=25.73 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=28.6
Q ss_pred CCccEEEEcCCCCCCCCCCHHHHHHHHHcC-CCHH
Q psy1522 112 PSELAVWVDPGEVTGDPIDPVLEIAARESG-VAIQ 145 (339)
Q Consensus 112 P~EltlWVDPgeVSyR~~Dpvl~kAa~ESG-L~~~ 145 (339)
|-++.++++|+|-.|+.+.+.+++.+.+.+ +.+.
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~ 47 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHE 47 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEE
Confidence 889999999999999988898888887763 4443
No 21
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=21.89 E-value=1e+02 Score=23.83 Aligned_cols=42 Identities=21% Similarity=0.488 Sum_probs=30.6
Q ss_pred CCCCCCCCcceeEEecC--CCCCHHHHHHHHHhCCCHHHHHhcCCCccEEE
Q psy1522 70 YPGKPLKGSAFRCLKTG--DPIDPVLEIAARESGVAIQDVLENLPSELAVW 118 (339)
Q Consensus 70 yP~~P~kGsayRCIri~--~~~Dpvl~~AA~esGl~~~dL~~~LP~EltlW 118 (339)
|.+.+ .|..|++|++. .....+|..|++..|++- -|.++.|+
T Consensus 5 ~~~~~-~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~------~~~~y~L~ 48 (87)
T cd01768 5 YPEDP-SGGTYKTLRVSKDTTAQDVIQQLLKKFGLDD------DPEDYALV 48 (87)
T ss_pred eCCcC-CCccEEEEEECCCCCHHHHHHHHHHHhCCcC------CcccEEEE
Confidence 34444 68899999984 567789999999999872 45555555
No 22
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=21.75 E-value=58 Score=24.78 Aligned_cols=49 Identities=20% Similarity=0.330 Sum_probs=34.7
Q ss_pred CCCCCcceeEEecC--CCCCHHHHHHHHHhCCCHHHHHhcCCCccEEE-EcCCCCCCC
Q psy1522 73 KPLKGSAFRCLKTG--DPIDPVLEIAARESGVAIQDVLENLPSELAVW-VDPGEVTGD 127 (339)
Q Consensus 73 ~P~kGsayRCIri~--~~~Dpvl~~AA~esGl~~~dL~~~LP~EltlW-VDPgeVSyR 127 (339)
...-|..|++|.+. .....+|..|++..|| ..=|.++.|| +......-|
T Consensus 11 ~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l------~~~~~~y~L~~~~~~~~~er 62 (93)
T PF00788_consen 11 DGSPGSTYKTIKVSSSTTAREVIEMALEKFGL------AEDPSDYCLVEVEESGGEER 62 (93)
T ss_dssp TSSSCCSEEEEEEETTSBHHHHHHHHHHHTTT------SSSGGGEEEEEEECTTTEEE
T ss_pred CCCCCccEEEEEECCCCCHHHHHHHHHHHhCC------CCCCCCEEEEEEEcCCCEEE
Confidence 33445579999984 5666999999999999 2457888888 555444444
No 23
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=21.56 E-value=3.5e+02 Score=24.98 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=41.5
Q ss_pred CCcceeEEecCCCCCHHHHHHHHHhCCCHHHHHhcC-CC-ccEEEEcCCCCCCCCCCHHHHHHHHHcCCCHHH
Q psy1522 76 KGSAFRCLKTGDPIDPVLEIAARESGVAIQDVLENL-PS-ELAVWVDPGEVTGDPIDPVLEIAARESGVAIQD 146 (339)
Q Consensus 76 kGsayRCIri~~~~Dpvl~~AA~esGl~~~dL~~~L-P~-EltlWVDPgeVSyR~~Dpvl~kAa~ESGL~~~d 146 (339)
|-.+++|+.+.+..+-.+...|+..|++..---... -+ -+|=||.---+-...-+-.|.+.+++-|++..+
T Consensus 90 k~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~~g~~~~~ 162 (212)
T COG0560 90 KAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAELGIPLEE 162 (212)
T ss_pred HHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHHcCCCHHH
Confidence 334889999999999999999999999842110001 11 144444322222222334555666777776544
No 24
>KOG3784|consensus
Probab=21.42 E-value=3.8e+02 Score=28.17 Aligned_cols=95 Identities=22% Similarity=0.287 Sum_probs=57.8
Q ss_pred cCChhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHhhhcc------CCCCCCCCCCCcce--eEEecCCCCCH
Q psy1522 20 KLPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNKALKEKFS------GHWYPGKPLKGSAF--RCLKTGDPIDP 91 (339)
Q Consensus 20 klprrrv~~F~e~L~~~L~erf~~~w~~~~~~~~~~~le~~L~e~f~------~HWyP~~P~kGsay--RCIri~~~~Dp 91 (339)
+|++.+++-+...|++.|.+.-++ .=+.....+++.|.+.=. .--- -.|+.. +|++ ++..|.
T Consensus 63 ~L~~~~~~~rr~~leqylqa~~q~-----~~l~~s~~~~~fL~~~q~~~~v~l~v~l----png~~i~i~~~~-s~tt~~ 132 (407)
T KOG3784|consen 63 KLTPQQLDSRRRGLEQYLQAVCQD-----PVLARSELVQKFLMRAQPMEEVELDVFL----PNGEKITINCLV-SDTASL 132 (407)
T ss_pred CCChhhhHHHHHHHHHHHHHHhcC-----ccccchhhhhHHHHhccccceeEEEEEc----cCCceEEEEEEe-cccHHH
Confidence 699999999999999999877666 112222333444433100 0000 134433 3443 788999
Q ss_pred HHHHHHHHhCCCHHHHHhcCCCccEEEEcCCCCC
Q psy1522 92 VLEIAARESGVAIQDVLENLPSELAVWVDPGEVT 125 (339)
Q Consensus 92 vl~~AA~esGl~~~dL~~~LP~EltlWVDPgeVS 125 (339)
++..||++.|+. +++...+---+..-.|||..+
T Consensus 133 vl~~v~~kl~l~-~e~i~~f~lFlvr~~~~~~ls 165 (407)
T KOG3784|consen 133 VLKSVCRKLGLP-DELIGYFGLFLVRDNDPGNLS 165 (407)
T ss_pred HHHHHHhhcCCc-hHhhhheeeeEEeccCCCcce
Confidence 999999999998 666555544444444444433
No 25
>COG3112 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.05 E-value=80 Score=27.90 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHhCCCHHHHHhcCCCccEEEEcCCCCCCC
Q psy1522 88 PIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVTGD 127 (339)
Q Consensus 88 ~~Dpvl~~AA~esGl~~~dL~~~LP~EltlWVDPgeVSyR 127 (339)
++|. +++||...--+..++. +...|.|||+|-.||..|
T Consensus 38 kl~~-vl~~a~~~~~s~~~~~-~~G~Eytl~~~geEVmVr 75 (121)
T COG3112 38 KLDE-VLQAADTLKGSEREWQ-LAGHEYTLWMDGEEVMVR 75 (121)
T ss_pred HHHH-HHHHHHHhhcChhhhe-ecCcEEEEEEcCceeeee
Confidence 4444 4455555544545652 558999999999999999
No 26
>PF14941 OAF: Transcriptional regulator, Out at first
Probab=20.10 E-value=43 Score=32.59 Aligned_cols=18 Identities=56% Similarity=1.176 Sum_probs=14.7
Q ss_pred CCCCC-------CCCCCcceeE-Eec
Q psy1522 68 HWYPG-------KPLKGSAFRC-LKT 85 (339)
Q Consensus 68 HWyP~-------~P~kGsayRC-Iri 85 (339)
-|||. ++.|++.||| |+.
T Consensus 194 ~WYPCgLKYCkgkd~k~ssYrCGIKT 219 (240)
T PF14941_consen 194 EWYPCGLKYCKGKDQKPSSYRCGIKT 219 (240)
T ss_pred eeEccchhhccCCCCCCCcccccccc
Confidence 69994 6679999999 775
Done!