Query psy1522
Match_columns 339
No_of_seqs 201 out of 253
Neff 3.5
Searched_HMMs 29240
Date Sat Aug 17 00:17:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e9v_A Protein BTG2; B-cell tr 100.0 7.3E-45 2.5E-49 307.0 8.6 103 1-127 1-105 (120)
2 2z15_A Protein TOB1; human TOB 100.0 1.1E-43 3.6E-48 303.3 8.2 103 1-127 7-109 (130)
3 3e9v_A Protein BTG2; B-cell tr 99.5 1.3E-14 4.6E-19 122.5 3.6 48 128-175 66-116 (120)
4 2z15_A Protein TOB1; human TOB 99.4 7.7E-14 2.6E-18 119.2 2.8 52 127-178 69-123 (130)
5 2k53_A A3DK08 protein; NESG, C 40.4 11 0.00036 28.8 1.4 33 79-111 27-59 (76)
6 1rax_A Protein (RA-domain of R 39.5 7.9 0.00027 32.7 0.6 43 75-117 38-89 (115)
7 2k5e_A Uncharacterized protein 38.0 6.4 0.00022 29.8 -0.1 33 79-111 29-61 (73)
8 2lyc_A Spindle and kinetochore 35.6 42 0.0014 28.5 4.5 48 13-63 18-65 (130)
9 1lfd_A Ralgds; RAL, effector i 33.9 9.6 0.00033 30.7 0.3 39 75-113 13-58 (87)
10 1twf_A B220, DNA-directed RNA 29.9 11 0.00038 43.5 0.0 9 7-15 1342-1350(1733)
11 3kh0_A Ralgds, ralgef, RAL gua 29.5 6.3 0.00022 34.2 -1.6 38 75-112 35-79 (140)
12 2ga1_A Protein of unknown func 26.0 2.6E+02 0.0089 22.7 7.6 41 72-113 36-76 (106)
13 1ef5_A RGL; RAS-binding domain 23.0 9.8 0.00033 31.5 -1.5 52 74-126 27-87 (103)
No 1
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=100.00 E-value=7.3e-45 Score=307.03 Aligned_cols=103 Identities=37% Similarity=0.738 Sum_probs=101.4
Q ss_pred CcHHHHHHHHHHHHHHHhcc--CChhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHhhhccCCCCCCCCCCCc
Q psy1522 1 MMHVEIQVALNFVISYLYNK--LPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNKALKEKFSGHWYPGKPLKGS 78 (339)
Q Consensus 1 ~M~~EI~aAVnFl~~~L~~k--lprrrv~~F~e~L~~~L~erf~~~w~~~~~~~~~~~le~~L~e~f~~HWyP~~P~kGs 78 (339)
.|++||++|||||++||+++ ||++++++|+++|+++|.+||++ ||||++|.|||
T Consensus 1 ~M~~EI~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~------------------------HW~P~~P~kGs 56 (120)
T 3e9v_A 1 DMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKH------------------------HWFPEKPSKGS 56 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTT------------------------SCCTTSTTTTH
T ss_pred ChHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhc------------------------CCCCCCCCCCC
Confidence 59999999999999999977 99999999999999999999999 99999999999
Q ss_pred ceeEEecCCCCCHHHHHHHHHhCCCHHHHHhcCCCccEEEEcCCCCCCC
Q psy1522 79 AFRCLKTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVTGD 127 (339)
Q Consensus 79 ayRCIri~~~~Dpvl~~AA~esGl~~~dL~~~LP~EltlWVDPgeVSyR 127 (339)
|||||+||+++||+|++||+++||+++||+++||.||||||||||||||
T Consensus 57 ayRcIrin~~~Dp~l~~Aa~~sgl~~~~l~~~LP~eltlWvDPgeVs~R 105 (120)
T 3e9v_A 57 GYRCIRINHKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYR 105 (120)
T ss_dssp HHHCEECSSSCCHHHHHHHHHTTCCHHHHHHHSCTTEEEEEETTEEEEE
T ss_pred ceeEEEECCCCCHHHHHHHHHhCCCHHHHHHhCCcccEEEECCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999
No 2
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=100.00 E-value=1.1e-43 Score=303.33 Aligned_cols=103 Identities=66% Similarity=1.176 Sum_probs=101.9
Q ss_pred CcHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHhhhccCCCCCCCCCCCcce
Q psy1522 1 MMHVEIQVALNFVISYLYNKLPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNKALKEKFSGHWYPGKPLKGSAF 80 (339)
Q Consensus 1 ~M~~EI~aAVnFl~~~L~~klprrrv~~F~e~L~~~L~erf~~~w~~~~~~~~~~~le~~L~e~f~~HWyP~~P~kGsay 80 (339)
.|++||++|||||++||++|||++++++|+++|+++|.+||++ ||||++|.|||||
T Consensus 7 ~M~~EI~~av~Fl~~~L~~klp~~~v~~F~~~L~~~L~~~y~~------------------------HWyP~~P~kGs~y 62 (130)
T 2z15_A 7 GMQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEG------------------------HWYPEKPYKGSGF 62 (130)
T ss_dssp CSHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHTT------------------------CCCTTCTTTTHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcC------------------------CCCCCCCCcccce
Confidence 5999999999999999999999999999999999999999999 9999999999999
Q ss_pred eEEecCCCCCHHHHHHHHHhCCCHHHHHhcCCCccEEEEcCCCCCCC
Q psy1522 81 RCLKTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVTGD 127 (339)
Q Consensus 81 RCIri~~~~Dpvl~~AA~esGl~~~dL~~~LP~EltlWVDPgeVSyR 127 (339)
|||+|++++||+|++||+++||+++||+++||+||||||||||||||
T Consensus 63 RcI~i~~~~Dp~i~~Aa~~sGl~~~dl~~~LP~eltlWvDPgeVs~R 109 (130)
T 2z15_A 63 RCIHIGEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQ 109 (130)
T ss_dssp HCEEESSSBCHHHHHHHHTTTCCHHHHHHHSCTTEEEEEETTEEEEE
T ss_pred eEEEECCCCCHHHHHHHHHhCCCHHHHHHhCCccCEEEECCCEEEEE
Confidence 99999999999999999999999999999999999999999999999
No 3
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=99.47 E-value=1.3e-14 Score=122.53 Aligned_cols=48 Identities=35% Similarity=0.574 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHcCCCHHHhhhcCCCCceeeecCcccc---cCCCCcccCC
Q psy1522 128 PIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVR---GEREIATADP 175 (339)
Q Consensus 128 ~~Dpvl~kAa~ESGL~~~dl~l~LP~ELTlWVDP~EVs---GE~~~~~~~a 175 (339)
++||+|++||.++||++.+|+.+||+|||+||||+||| ||+|+++|+.
T Consensus 66 ~~Dp~l~~Aa~~sgl~~~~l~~~LP~eltlWvDPgeVs~R~GE~g~i~vly 116 (120)
T 3e9v_A 66 KMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGSICVLY 116 (120)
T ss_dssp SCCHHHHHHHHHTTCCHHHHHHHSCTTEEEEEETTEEEEEESTTSCEEEEE
T ss_pred CCCHHHHHHHHHhCCCHHHHHHhCCcccEEEECCCEEEEEecCCCeEEEEe
Confidence 68999999999999999999999999999999999999 9999999984
No 4
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=99.39 E-value=7.7e-14 Score=119.23 Aligned_cols=52 Identities=44% Similarity=0.716 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHcCCCHHHhhhcCCCCceeeecCcccc---cCCCCcccCCCcc
Q psy1522 127 DPIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVR---GEREIATADPSLH 178 (339)
Q Consensus 127 R~~Dpvl~kAa~ESGL~~~dl~l~LP~ELTlWVDP~EVs---GE~~~~~~~a~~~ 178 (339)
.++||+|++||.++||++.|+..+||+|||+||||+||| ||+|+++++...+
T Consensus 69 ~~~Dp~i~~Aa~~sGl~~~dl~~~LP~eltlWvDPgeVs~R~ge~g~i~~l~~~~ 123 (130)
T 2z15_A 69 EKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQIGEKGPVKVLYVDD 123 (130)
T ss_dssp SSBCHHHHHHHHTTTCCHHHHHHHSCTTEEEEEETTEEEEEESTTSCEEEEEECC
T ss_pred CCCCHHHHHHHHHhCCCHHHHHHhCCccCEEEECCCEEEEEEcCCCcEEEEeeCC
Confidence 789999999999999999999999999999999999999 9999999985443
No 5
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=40.43 E-value=11 Score=28.80 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=25.0
Q ss_pred ceeEEecCCCCCHHHHHHHHHhCCCHHHHHhcC
Q psy1522 79 AFRCLKTGDPIDPVLEIAARESGVAIQDVLENL 111 (339)
Q Consensus 79 ayRCIri~~~~Dpvl~~AA~esGl~~~dL~~~L 111 (339)
+.-|+.+...-...|++||+.-||+.++|++.|
T Consensus 27 G~~C~gC~~a~~~tLeeA~~~hgiD~d~ll~eL 59 (76)
T 2k53_A 27 GMHCLGCPSSMGESIEDACAVHGIDADKLVKEL 59 (76)
T ss_dssp TCCCCSSCCCCCSBHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCccccccHHHHHHHcCCCHHHHHHHH
Confidence 344877764445669999999999999887654
No 6
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=39.48 E-value=7.9 Score=32.66 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=33.3
Q ss_pred CCCcceeEEec--CCCCCHHHHHHHHHhCCCHH-----HHHhcCC--CccEE
Q psy1522 75 LKGSAFRCLKT--GDPIDPVLEIAARESGVAIQ-----DVLENLP--SELAV 117 (339)
Q Consensus 75 ~kGsayRCIri--~~~~Dpvl~~AA~esGl~~~-----dL~~~LP--~Eltl 117 (339)
..|.-||||.+ ++++.-+|.+|-..-+|+-+ +|.+.|| .||.|
T Consensus 38 ~~gn~YKSIlltsqDktp~VI~raL~Khnl~~~~~~~y~L~Q~Lp~~kEL~i 89 (115)
T 1rax_A 38 DNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKI 89 (115)
T ss_dssp SSCCCCEEEEEETTCCHHHHHHHHHHHHTCTTSCSTTEEEEEECSSSCEEEE
T ss_pred CCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEEEEEcCCCCeEec
Confidence 56999999997 48999999999999999743 4556676 44444
No 7
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=38.01 E-value=6.4 Score=29.78 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=25.3
Q ss_pred ceeEEecCCCCCHHHHHHHHHhCCCHHHHHhcC
Q psy1522 79 AFRCLKTGDPIDPVLEIAARESGVAIQDVLENL 111 (339)
Q Consensus 79 ayRCIri~~~~Dpvl~~AA~esGl~~~dL~~~L 111 (339)
+..|+.+.......|++||+.-||+.++|++.|
T Consensus 29 G~~c~~C~~a~~~tL~~Aa~~~gid~~~ll~~L 61 (73)
T 2k5e_A 29 NLGCIGCMGAQNESLEQGANAHGLNVEDILRDL 61 (73)
T ss_dssp TGGGGGTTTGGGSBHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCCCCCccccccHHHHHHHcCCCHHHHHHHH
Confidence 456777665456779999999999999887654
No 8
>2lyc_A Spindle and kinetochore-associated protein 1 HOMO; SKA1, microtubule, SKA1-MTBD, protein binding; NMR {Caenorhabditis elegans}
Probab=35.65 E-value=42 Score=28.46 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=35.8
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHhh
Q psy1522 13 VISYLYNKLPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNKALKE 63 (339)
Q Consensus 13 l~~~L~~klprrrv~~F~e~L~~~L~erf~~~w~~~~~~~~~~~le~~L~e 63 (339)
|-+||.+||..++|+.+.+++..++..+|+=- ..|.+..+..+..+..
T Consensus 18 IPkYmrGRlTle~lN~~i~~in~~~~~KY~il---~~p~k~l~~~~~~~~~ 65 (130)
T 2lyc_A 18 IPKYQLGRLTLEMMNEIVSKMDDFLMKKSKIL---GKTNKQLTRSDREVLD 65 (130)
T ss_dssp SCHHHHSSCCHHHHHHHHHHHHHHHHHHHHHT---TCCTTTCCHHHHHHHH
T ss_pred cCHHHHhhccHHHHHHHHHHHHHHHHHHHHHH---HhHHHHcCHHHHHHHH
Confidence 45799999999999999999999999999652 2344444444554444
No 9
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=33.90 E-value=9.6 Score=30.73 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=31.0
Q ss_pred CCCcceeEEec--CCCCCHHHHHHHHHhCCCHH-----HHHhcCCC
Q psy1522 75 LKGSAFRCLKT--GDPIDPVLEIAARESGVAIQ-----DVLENLPS 113 (339)
Q Consensus 75 ~kGsayRCIri--~~~~Dpvl~~AA~esGl~~~-----dL~~~LP~ 113 (339)
..|.-||||.+ ++++.-+|.+|-..-+|+-+ +|.+.||.
T Consensus 13 ~~gn~YKSI~ltsqDrtp~vI~~al~Khnl~~~~~~~y~L~Q~Lp~ 58 (87)
T 1lfd_A 13 DNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELLQIISE 58 (87)
T ss_dssp CSSEEEEEEEEETTCBHHHHHHHHHHHTTCCSSCGGGEEEEEESSS
T ss_pred CCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEEEEEcCC
Confidence 45999999997 47889999999999999754 45566653
No 10
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=29.94 E-value=11 Score=43.52 Aligned_cols=9 Identities=0% Similarity=-0.045 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy1522 7 QVALNFVIS 15 (339)
Q Consensus 7 ~aAVnFl~~ 15 (339)
.||-+.|++
T Consensus 1342 EAAR~~Ii~ 1350 (1733)
T 1twf_A 1342 EAGRAALYK 1350 (1733)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 11
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=29.54 E-value=6.3 Score=34.24 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=30.0
Q ss_pred CCCcceeEEec--CCCCCHHHHHHHHHhCCCHH-----HHHhcCC
Q psy1522 75 LKGSAFRCLKT--GDPIDPVLEIAARESGVAIQ-----DVLENLP 112 (339)
Q Consensus 75 ~kGsayRCIri--~~~~Dpvl~~AA~esGl~~~-----dL~~~LP 112 (339)
..|.-||||.+ +++..-+|.+|-..-+++.+ +|.+.||
T Consensus 35 ~~gnlYKSIllTsqDrtp~VI~rAL~Khnl~~~~~~~y~LvQ~Lp 79 (140)
T 3kh0_A 35 DNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILS 79 (140)
T ss_dssp SSSEEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGGEEEEEEEE
T ss_pred CCCcEEEEEEeecccccHHHHHHHHHHhCCCCCchhceEEEEEcC
Confidence 56999999987 47888999999999988754 3445566
No 12
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=26.01 E-value=2.6e+02 Score=22.65 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=29.4
Q ss_pred CCCCCCcceeEEecCCCCCHHHHHHHHHhCCCHHHHHhcCCC
Q psy1522 72 GKPLKGSAFRCLKTGDPIDPVLEIAARESGVAIQDVLENLPS 113 (339)
Q Consensus 72 ~~P~kGsayRCIri~~~~Dpvl~~AA~esGl~~~dL~~~LP~ 113 (339)
-+|..-.|-=||+ |.++.=...-...++|.+.+++++..|.
T Consensus 36 ~dP~i~~G~P~I~-GTRI~V~~Il~~l~~G~s~eeIl~~yP~ 76 (106)
T 2ga1_A 36 ITPGVCGGQARIR-NTRIPVWTLVAYRQQGAPDKELLANYPG 76 (106)
T ss_dssp CCTTSGGGCCEET-TSCCBHHHHHHHHHTTCCHHHHHHHSTT
T ss_pred eCccccCCccEEe-cceeeHHHHHHHHHcCCCHHHHHHHCCC
Confidence 3566666778998 6666633333677889999999988874
No 13
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=23.02 E-value=9.8 Score=31.54 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=36.8
Q ss_pred CCCCcceeEEec--CCCCCHHHHHHHHHhCCCHH-----HHHhcCC--CccEEEEcCCCCCC
Q psy1522 74 PLKGSAFRCLKT--GDPIDPVLEIAARESGVAIQ-----DVLENLP--SELAVWVDPGEVTG 126 (339)
Q Consensus 74 P~kGsayRCIri--~~~~Dpvl~~AA~esGl~~~-----dL~~~LP--~EltlWVDPgeVSy 126 (339)
...|.-||||.+ ++++.-+|.+|-..-+|+-+ +|.+.|| .||.|= |=..|-|
T Consensus 27 ~~~g~~YKSIlltsqDrtp~VI~raL~Khnl~~~~~~~y~L~Q~Lp~~kEL~iP-d~aNVFY 87 (103)
T 1ef5_A 27 DNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIP-DSANVFY 87 (103)
T ss_dssp SCSSCCCCCBCCSSCCCTHHHHHHHTTTTTCCCCSSSSEEEEEECSSSCCEESS-CCCCTTT
T ss_pred cCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCChhheEEEEEcCCCCEEecC-CCcceEE
Confidence 367899999997 48999999999999888654 3556677 444442 4444444
Done!