RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1522
(339 letters)
>gnl|CDD|149033 pfam07742, BTG, BTG family.
Length = 119
Score = 142 bits (360), Expect = 3e-42
Identities = 56/127 (44%), Positives = 70/127 (55%), Gaps = 28/127 (22%)
Query: 2 MHVEIQVALNFVISYLYNK--LPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNK 59
M+ EI A+NFV L+ K LPRR+V IF EELE AL EK+
Sbjct: 1 MYTEIAAAVNFVCRLLFGKGKLPRRQVEIFAEELENALVEKYK----------------- 43
Query: 60 ALKEKFSGHWYPGKPLKGSAFRCL--KTGDPIDPVLEIAARESGVAIQDVLENLPSELAV 117
GHWYP P KG A+RC+ + +DP +E AA ESG+ +D+L LP EL +
Sbjct: 44 -------GHWYPDNPSKGQAYRCIRINCNEGMDPCIEKAAAESGLDYEDLLSLLPKELTI 96
Query: 118 WVDPGEV 124
WVDPGEV
Sbjct: 97 WVDPGEV 103
>gnl|CDD|128410 smart00099, btg1, tob/btg1 family. The tob/btg1 is a family of
proteins that inhibit cell proliferation.
Length = 108
Score = 125 bits (316), Expect = 5e-36
Identities = 55/125 (44%), Positives = 71/125 (56%), Gaps = 26/125 (20%)
Query: 2 MHVEIQVALNFVISYL--YNKLPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNK 59
M +EI A+NF+ S L +NKL +RRV IF E+L + LKEK+ HWYP K
Sbjct: 1 MKLEIAAAVNFITSLLRKHNKLSKRRVEIFAEKLTRLLKEKYKNHWYPEK---------- 50
Query: 60 ALKEKFSGHWYPGKPLKGSAFRCLKTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWV 119
P KGS FRC++ +DPV+E A +ESG+ I D+ NLP EL +WV
Sbjct: 51 --------------PYKGSGFRCIRINQKVDPVIEQACKESGLDIDDLGGNLPKELTLWV 96
Query: 120 DPGEV 124
DP EV
Sbjct: 97 DPFEV 101
>gnl|CDD|211904 TIGR04108, HutX, putative heme utilization carrier protein HutX.
Members of this protein family are HutX, found paired
with HutW in some heme utilization loci although not
shown directly to be necessary for heme utilization.
This protein is homologous to the heme carrier protein
HemS, while its partner HutW is homologous to (but does
not complement) HemN, the radical SAM enzyme
oxygen-independent coproporphyrinogen III oxidase
involved in heme biosynthesis.
Length = 153
Score = 37.2 bits (87), Expect = 0.003
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 90 DPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVTGDPIDPVLE 134
D VLE ARE GV+ +V+ LP E+ V GD D +L+
Sbjct: 10 DAVLEAIARELGVSELEVVRALPEEMVTLVP-----GDRFDEILQ 49
Score = 34.9 bits (81), Expect = 0.022
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 130 DPVLEIAARESGVAIQDVLENLPSELAVWVD 160
D VLE ARE GV+ +V+ LP E+ V
Sbjct: 10 DAVLEAIARELGVSELEVVRALPEEMVTLVP 40
>gnl|CDD|217461 pfam03261, CDK5_activator, Cyclin-dependent kinase 5 activator
protein.
Length = 314
Score = 34.9 bits (80), Expect = 0.047
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 246 KFGSTKLKTNSKRTNRMSPTEFSNYIKQR---ALLQQQHNNHPQPSLPPTLSNFLHSPGA 302
GS K KT+ K T ++ + + + Q L + LS+
Sbjct: 62 ASGSKKKKTSKKSTANLASSSYQKIVIQLNRENLKKSVPRPSDTTLSCANLSSLREPSPG 121
Query: 303 QSPHYSPNTPSGNTARSLSP 322
Q P P+ SG A +
Sbjct: 122 QPPAPPPSVLSGKNANCIPS 141
>gnl|CDD|214514 smart00094, TR_FER, Transferrin.
Length = 332
Score = 34.6 bits (80), Expect = 0.068
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 22/84 (26%)
Query: 14 ISYLYNKLPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNKAL-----------K 62
+ LYNKL R N EKA+ + FS PG D ++N AL
Sbjct: 124 MGLLYNKLVIRPPN---CPFEKAVSKFFSASCAPGADKPDPNSNLCALCAGDNKCACSSH 180
Query: 63 EKFSGHWYPGKPLKGSAFRCLKTG 86
E + G Y G AFRCL G
Sbjct: 181 EPYYG--YSG------AFRCLAEG 196
>gnl|CDD|216908 pfam02159, Oest_recep, Oestrogen receptor.
Length = 139
Score = 31.8 bits (72), Expect = 0.19
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 290 PPTLSNFLHSPGAQSPHYSPNTPSGNTARSLSPS 323
P LS FLH G Q P+Y N PS R S +
Sbjct: 72 SPQLSPFLHPHGQQVPYYLENEPSPAAVRETSST 105
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 32.3 bits (74), Expect = 0.36
Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 6/101 (5%)
Query: 237 FTTASFAQTKFGSTKLKTNSKRTNRMSPTEFSNYIKQRALLQQQHNNHPQPSLPPTLSNF 296
+S L +S E + + R +H + PP S+
Sbjct: 272 LKQSSLLDVSLSVVLLNADSSVEANGVEPEPTGSVSDRP----RHLSSDSSPSPPDTSD- 326
Query: 297 LHSPGAQSPHYSPNTPSGNTARSLSPSYYFSQKRNRKLKQG 337
P ++P + + S A + +KR KQ
Sbjct: 327 -SDPSTETPPPASLSHSPPAAFERPLALSPKRKREGDKKQK 366
>gnl|CDD|201070 pfam00191, Annexin, Annexin. This family of annexins also
includes giardin that has been shown to function as an
annexin.
Length = 66
Score = 28.6 bits (65), Expect = 0.77
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 27 NIFGEELEKALKEKFSGH 44
++G++LEK +K + SG
Sbjct: 41 KLYGKDLEKDIKSETSGD 58
>gnl|CDD|215479 PLN02887, PLN02887, hydrolase family protein.
Length = 580
Score = 31.0 bits (70), Expect = 1.1
Identities = 12/59 (20%), Positives = 21/59 (35%)
Query: 215 SASPSPTKGSPTFLPRSTAPLTFTTASFAQTKFGSTKLKTNSKRTNRMSPTEFSNYIKQ 273
+ S P P + + Q S KT++ ++ TEFS++ K
Sbjct: 5 LSRVSLPLRLPRLFPAAAREMPPAARLLLQPSSLSFSPKTSNFNRLDVTSTEFSSFRKG 63
>gnl|CDD|222097 pfam13393, tRNA-synt_His, Histidyl-tRNA synthetase. This is a
family of class II aminoacyl-tRNA synthetase-like and
ATP phosphoribosyltransferase regulatory subunits.
Length = 308
Score = 30.6 bits (70), Expect = 1.1
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 23/98 (23%)
Query: 80 FRCLKTGDPIDPVLEIAARESGV--AIQDVLENLPSELAVWVDPGEVTGDP--IDPVLEI 135
L+ D + LE E G+ A+ D L LP E+ GDP +D LE+
Sbjct: 174 RDALQRKDLPE--LEELLAELGLDPALADALLALP----------ELYGDPEVLDEALEL 221
Query: 136 AARESGVAIQD-------VLENLPSELAVWVDPGEVRG 166
A D +LE L + + +D E+RG
Sbjct: 222 LPGSPAAAALDELEALAALLEALGPGVRLTLDLAELRG 259
>gnl|CDD|235430 PRK05362, PRK05362, phosphopentomutase; Provisional.
Length = 394
Score = 30.5 bits (70), Expect = 1.2
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 13/36 (36%)
Query: 83 LKTGDPI-----DPVLEIAARESGVAIQDV--LENL 111
+KTG PI D V +IAA E +V LE L
Sbjct: 146 MKTGKPIVYTSADSVFQIAAHE------EVFGLEEL 175
Score = 27.8 bits (63), Expect = 8.5
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 13/34 (38%)
Query: 125 TGDPI-----DPVLEIAARESGVAIQDV--LENL 151
TG PI D V +IAA E +V LE L
Sbjct: 148 TGKPIVYTSADSVFQIAAHE------EVFGLEEL 175
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 30.1 bits (69), Expect = 1.8
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 29/85 (34%)
Query: 77 GSAFRCLKTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVTGDPI-----DP 131
GSA+ + +E+ R D++ LP + EVT + + +P
Sbjct: 206 GSAYP-----LDEEETMEVKGR-------DLVTGLPRTV-------EVTSEEVREALKEP 246
Query: 132 VLEIAARESGVAIQDVLENLPSELA 156
+ EI AI+ VLE P ELA
Sbjct: 247 LDEIVE-----AIKSVLEKTPPELA 266
>gnl|CDD|172484 PRK13982, PRK13982, bifunctional
SbtC-like/phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Provisional.
Length = 475
Score = 29.7 bits (67), Expect = 2.4
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 25/101 (24%)
Query: 73 KPLKGSAFRCLK--TGDPIDPVLEIAARES---GVAIQDVLENL---------PSELAVW 118
KPL G T +PIDPV IA R S G AI P +LA
Sbjct: 252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA-- 309
Query: 119 VDPGEVTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWV 159
DP V ++ +AR+ A++ LP+++A++
Sbjct: 310 -DPQGVKVIHVE-----SARQMLAAVE---AALPADIAIFA 341
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 29.4 bits (67), Expect = 2.7
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 106 DVLENLPSELAVWVDPGEVTGDPIDPVLEIAARESGVAIQDVLENLPSELA 156
D++ LP + + EV +PV I A+++VLE P ELA
Sbjct: 226 DLVTGLPKT--IEISSEEVREALKEPVSAIVE-----AVKEVLEKTPPELA 269
>gnl|CDD|223947 COG1015, DeoB, Phosphopentomutase [Carbohydrate transport and
metabolism].
Length = 397
Score = 29.5 bits (67), Expect = 2.9
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 29/89 (32%)
Query: 38 KEKFSGHW-YPGKPLKD-----SSTNNKALKE------KFSGHWYPG----KPLKGSAF- 80
K+ +GHW G P+ T N +E + +G G K G+
Sbjct: 83 KDTPTGHWEIMGVPVLFPFGYFPDTVNGFPEELLDEIERRTGR--KGILGNKHASGTEII 140
Query: 81 -----RCLKTGDPI-----DPVLEIAARE 99
+KTG PI D V +IAA E
Sbjct: 141 KDLGEEHMKTGKPIVYTSADSVFQIAAHE 169
>gnl|CDD|162494 TIGR01696, deoB, phosphopentomutase. This protein is involved in
the purine and pyrimidine salvage pathway. It catalyzes
the conversion of D-ribose 1-phosphate to D-ribose
5-phosphate and the conversion of 2-deoxy-D-ribose
1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed
members of this protein are characterized deoB proteins
from E.Coli and Bacillus. This model matches pfam01676
for Metalloenzyme superfamily [Purines, pyrimidines,
nucleosides, and nucleotides, Other].
Length = 381
Score = 29.5 bits (66), Expect = 3.1
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 21/113 (18%)
Query: 38 KEKFSGHW-----YPGKPLK--DSSTNNKALK--EKFSGHWYPG-KPLKGSAF------R 81
K+ +GHW P K + + L+ E+ +G Y G KP G+
Sbjct: 78 KDTMTGHWEIMGLPILFPFKVFPNGFPQELLQKLEERAGRKYLGNKPASGTVILDELGEE 137
Query: 82 CLKTGDPI-----DPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVTGDPI 129
+KTG I D VL+IAA E ++++ E + DP G I
Sbjct: 138 HMKTGKLIVYTSADSVLQIAAHEETFPLEELYEICEIARELTTDPKYNIGRII 190
Score = 28.7 bits (64), Expect = 5.4
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 21/101 (20%)
Query: 62 KEKFSGHW-YPGKPLKGSAFRCLKTGDP---IDPVLEIAARESGVAIQDVLENLPSELAV 117
K+ +GHW G P+ F+ G P + + E A R+ L N P+ V
Sbjct: 78 KDTMTGHWEIMGLPIL-FPFKVFPNGFPQELLQKLEERAGRK-------YLGNKPASGTV 129
Query: 118 WVDP-GE---VTGDPI-----DPVLEIAARESGVAIQDVLE 149
+D GE TG I D VL+IAA E ++++ E
Sbjct: 130 ILDELGEEHMKTGKLIVYTSADSVLQIAAHEETFPLEELYE 170
>gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol
dehydrogenase (secoisolariciresinol-DH)-like, classical
(c) SDRs. Podophyllum secoisolariciresinol-DH is a homo
tetrameric, classical SDR that catalyzes the
NAD-dependent conversion of (-)-secoisolariciresinol to
(-)-matairesinol via a (-)-lactol intermediate.
(-)-Matairesinol is an intermediate to various
8'-lignans, including the cancer-preventive mammalian
lignan, and those involved in vascular plant defense.
This subgroup also includes rice momilactone A synthase
which catalyzes the conversion of
3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide
into momilactone A, Arabidopsis ABA2 which during
abscisic acid (ABA) biosynthesis, catalyzes the
conversion of xanthoxin to abscisic aldehyde and, maize
Tasselseed2 which participate in the maize sex
determination pathway. SDRs are a functionally diverse
family of oxidoreductases that have a single domain with
a structurally conserved Rossmann fold (alpha/beta
folding pattern with a central beta-sheet), an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase
(15-PGDH) numbering). In addition to the Tyr and Lys,
there is often an upstream Ser (Ser-138, 15-PGDH
numbering) and/or an Asn (Asn-107, 15-PGDH numbering)
contributing to the active site; while substrate binding
is in the C-terminal region, which determines
specificity. The standard reaction mechanism is a
4-pro-S hydride transfer and proton relay involving the
conserved Tyr and Lys, a water molecule stabilized by
Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P)-binding motif and missing or
unusual active site residues. Reactions catalyzed within
the SDR family include isomerization, decarboxylation,
epimerization, C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 249
Score = 29.0 bits (65), Expect = 3.5
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 143 AIQDVLENLPSELAVW------VDPGEVRGEREIATADPSLHAAAMDREVHKTFNPEARV 196
A+ + + +EL V P V + TA + A++ V N +
Sbjct: 159 AVLGLTRSAATELGEHGIRVNCVSPYGV--ATPLLTAGFGVEDEAIEEAVRGAANLKGTA 216
Query: 197 FRPVEVCLASLSLNGEE 213
RP ++ A L L ++
Sbjct: 217 LRPEDIAAAVLYLASDD 233
>gnl|CDD|203376 pfam06016, Reovirus_L2, Reovirus core-spike protein lambda-2 (L2).
This family consists of several Reovirus core-spike
protein lambda-2 (L2) sequences. The reovirus L2 genome
segment encodes the core spike protein lambda-2, which
mediates enzymatic reactions in 5' capping of the viral
plus-strand transcripts.
Length = 1290
Score = 28.6 bits (64), Expect = 5.7
Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 17/132 (12%)
Query: 200 VEVCLASLSLNGEERSASPSPTKGSPTFLPRSTA-PLTFTTASFAQTKFGSTKLKTNSKR 258
+E CL SLN R ++P T+ + P +A P+ T + L N +
Sbjct: 257 LESCLDQFSLNARARPSTPV-TRLDQCYHPVWSAQPVGENT--LTYRLGNLSLLAVNGYQ 313
Query: 259 TNRMSPTEFSNYIKQRALLQQQHNNHPQPSLPPTLSNFLHSPGAQSPHYSPNTPSGNTAR 318
R P + + + + PQ + P L + SP G T
Sbjct: 314 LARPIPRHPTMSDVSSFVARLMSDGDPQTPIWPREDQILIW------YDSPFVVDGATQ- 366
Query: 319 SLSPSYYFSQKR 330
Y+ +KR
Sbjct: 367 ------YYVRKR 372
>gnl|CDD|218566 pfam05349, GATA-N, GATA-type transcription activator, N-terminal.
GATA transcription factors mediate cell differentiation
in a diverse range of tissues. Mutation are often
associated with certain congenital human disorders. The
six classical vertebrate GATA proteins, GATA-1 to
GATA-6, are highly homologous and have two tandem zinc
fingers. The classical GATA transcription factors
function transcription activators. In lower metazoans
GATA proteins carry a single canonical zinc finger. This
family represents the N-terminal domain of the family of
GATA transcription activators.
Length = 177
Score = 27.9 bits (62), Expect = 6.0
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 283 NHPQPSLPPTLSNFLHSPGAQSPHYSPNTPSGNTARSLS 321
NH Q + FLHS A SP Y P T + SL
Sbjct: 10 NHGQAAYDHDSGGFLHSA-ASSPVYVPTTRVPSMLPSLP 47
>gnl|CDD|203412 pfam06228, ChuX_HutX, Haem utilisation ChuX/HutX. This family is
found within haem utilisation operons. It has a similar
structure to that of pfam05171. pfam05171 usually occurs
as a duplicated domain, but this domain occurs as a
single domain and forms a dimer. The organisation of the
dimer is very similar to that of the duplicated
pfam05171 domains. It binds haem via conserved
histidines.
Length = 141
Score = 27.2 bits (61), Expect = 7.2
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 96 AARESGVAIQDVLENLPSELAVWVDPGEVTGDPIDPVLE 134
A + GV+ +V+ LP E+ V + G+ D +L+
Sbjct: 1 IAEKLGVSELEVVAALPGEMVVLLP-----GERFDELLQ 34
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase.
This model encompasses two equivalog models for the
copper and cadmium-type heavy metal transporting P-type
ATPases (TIGR01511 and TIGR01512) as well as those
species which score ambiguously between both models. For
more comments and references, see the files on TIGR01511
and 01512.
Length = 556
Score = 28.4 bits (64), Expect = 7.5
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 94 EIAARESGVAIQDVLENLPSELAVWVDPGEVTGDPIDPVLEIAARESGVAIQDVLENLPS 153
E A + A+ +L PS V G E+ E + + D++ P
Sbjct: 36 ERAKGRASDALSALLALAPSTARVLQGDGSEE--------EVPVEE--LQVGDIVIVRPG 85
Query: 154 ELAVWVDPGEV-RGEREI 170
E + VD G V GE E+
Sbjct: 86 ER-IPVD-GVVISGESEV 101
>gnl|CDD|204973 pfam12587, DUF3761, Protein of unknown function (DUF3761). This
family of proteins is found in bacteria. Proteins in
this family are typically between 100 and 157 amino
acids in length.
Length = 87
Score = 26.5 bits (58), Expect = 7.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 302 AQSPHYSPNTPSGNTARSLSPSYYFSQKR 330
+P S + P+G TAR SY FS+
Sbjct: 45 VHAPARSKSVPAGATARCRDGSYSFSRHH 73
>gnl|CDD|116541 pfam07931, CPT, Chloramphenicol phosphotransferase-like protein.
The members of this family are all similar to
chloramphenicol 3-O phosphotransferase (CPT) expressed
by Streptomyces venezuelae. Chloramphenicol (Cm) is a
metabolite produced by this bacterium that can inhibit
ribosomal peptidyl transferase activity and therefore
protein production. By transferring a phosphate group to
the C-3 hydroxyl group of Cm, CPT inactivates this
potentially lethal metabolite.
Length = 174
Score = 27.4 bits (61), Expect = 7.6
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 143 AIQDVLENLPSELAVWVD---PGEVRGEREIATADPSLHAAAMDRE-VH 187
+Q +L L ++V P EV REI D AA E VH
Sbjct: 101 CLQRLLSGLD---VLFVGVRCPLEVLERREIERGDRVPGLAAWQAEAVH 146
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 27.8 bits (61), Expect = 8.0
Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 13/112 (11%)
Query: 170 IATADPSLHAAAMDREVHKTFNPEARVFRPVEVCLASLSLNGEE----------RSASPS 219
I S A + +T E E AS + SA+P+
Sbjct: 54 ITAGANSATTQAANTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPA 113
Query: 220 PTKGSPTFLPRSTAPLTFTT---ASFAQTKFGSTKLKTNSKRTNRMSPTEFS 268
P + ST P T T ++ STK T T + + T+ +
Sbjct: 114 PKQEQSQTTTESTTPKTKVTTPPSTNTPQPMQSTKSDTPQSPTIKQAQTDMT 165
>gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 27.7 bits (63), Expect = 8.2
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 29/85 (34%)
Query: 77 GSAFRCLKTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVTGDPI-----DP 131
GSA+ P D VLE+ R G +D++ LP + ++ + I +P
Sbjct: 212 GSAY-------PGDEVLEMEVR--G---RDLVTGLPKTI-------TISSNEIREALQEP 252
Query: 132 VLEIAARESGVAIQDVLENLPSELA 156
+ I A++ LE P ELA
Sbjct: 253 LSAIVE-----AVKVALEQTPPELA 272
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine
transporter; solute-binding domain. TauT is a Na(+)-
and Cl(-)-dependent, high-affinity, low-capacity
transporter of taurine and beta-alanine. Human TauT is
encoded by the SLC6A6 gene. TauT is expressed in brain,
retina, liver, kidney, heart, spleen, and pancreas. It
may play a part in the supply of taurine to the
intestinal epithelium and in the between-meal-capture of
taurine. It may also participate in re-absorbing taurine
that has been deconjugated from bile acids in the distal
lumen. Functional TauT protects kidney cells from
nephrotoxicity caused by the chemotherapeutic agent
cisplatin; cisplatin down-regulates TauT in a
p53-dependent manner. In mice, TauT has been shown to be
important for the maintenance of skeletal muscle
function and total exercise capacity. TauT-/- mice
develop additional clinically important diseases, some
of which are characterized by apoptosis, including
vision loss, olfactory dysfunction, and chronic liver
disease. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 542
Score = 27.9 bits (62), Expect = 8.5
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 85 TGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVTGDPIDPVLEI 135
+G I VL A+E GV I DV E+ P LA P VT P+ I
Sbjct: 300 SGFAIFSVLGFMAQEQGVDIADVAESGPG-LAFIAYPKAVTMMPLPTFWAI 349
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 27.8 bits (63), Expect = 9.0
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 106 DVLENLPSELAVWVDPGEVTGDPIDPVLEIAARESGVAIQDVLENLPSELA 156
D++ LP + + EV +P+ +I A++ VLE P ELA
Sbjct: 233 DLVTGLPKTIEI--SSEEVREALAEPLQQIVE-----AVKSVLEKTPPELA 276
>gnl|CDD|131605 TIGR02554, PrgH, type III secretion system protein PrgH/EprH. In
Samonella, this gene is part of a four-gene operon
PrgHIJK and in general is found in type III secretion
operons. PrgH has been shown to be required for
secretion , as well as being a structural component of
the needle complex [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 389
Score = 28.0 bits (62), Expect = 9.1
Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 13/72 (18%)
Query: 4 VEIQVALNFVISYLYNKLPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNKALKE 63
E+ A FV SY Y K R V F EL+ W GK + L
Sbjct: 331 EELARARQFVDSY-YRKWGGRYVQ-FAIELKD--------DWLKGKSFRYGGDGYVKLD- 379
Query: 64 KFSGHWYPGKPL 75
GHWY +PL
Sbjct: 380 --HGHWYFPQPL 389
>gnl|CDD|226244 COG3721, HugX, Putative heme iron utilization protein [Inorganic
ion transport and metabolism].
Length = 176
Score = 27.1 bits (60), Expect = 9.2
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 90 DPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVTGDPIDPVLE 134
D LE A + V +++ LP E V V GD D + +
Sbjct: 27 DGTLEAMAEQYNVTELEIVRALPEEAVVVVP-----GDRFDTIWD 66
>gnl|CDD|234195 TIGR03396, PC_PLC, phospholipase C, phosphocholine-specific,
Pseudomonas-type. Members of this protein family are
bacterial, phosphatidylcholine-hydrolyzing phospholipase
C enzymes, with a characteristic domain architecture as
found in hemolytyic (PlcH) and nonhemolytic (PlcN)
secreted enzymes of Pseudomonas aeruginosa. PlcH
hydrolyzes phosphatidylcholine to diacylglycerol and
phosphocholine, but unlike PlcN can also hydrolyze
sphingomyelin to ceramide ((N-acylsphingosine)) and
phosphocholine. Members of this family share the
twin-arginine signal sequence for Sec-independent
transport across the plasma membrane. PlcH is secreted
as a heterodimer with a small chaperone, PlcR, encoded
immediately downstream [Cellular processes,
Pathogenesis].
Length = 689
Score = 28.1 bits (63), Expect = 9.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 282 NNHPQPSLPPTLSNFLHSPGAQSPHYSPNTP 312
+ P P+LP T +++ + A P Y P P
Sbjct: 451 DTTPFPALPDTSADYAVAAAALIPKYPPPPP 481
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.131 0.386
Gapped
Lambda K H
0.267 0.0632 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,567,124
Number of extensions: 1696729
Number of successful extensions: 1338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1329
Number of HSP's successfully gapped: 45
Length of query: 339
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 241
Effective length of database: 6,590,910
Effective search space: 1588409310
Effective search space used: 1588409310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.7 bits)