RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1522
(339 letters)
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.30A {Homo sapiens} SCOP:
d.370.1.1 PDB: 2d5r_B
Length = 130
Score = 136 bits (344), Expect = 4e-40
Identities = 68/124 (54%), Positives = 84/124 (67%), Gaps = 24/124 (19%)
Query: 2 MHVEIQVALNFVISYLYNKLPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNKAL 61
M +EIQVALNF+ISYLYNKLPRRRVNIFGEELE+ LK+K+ GHWYP KP K
Sbjct: 8 MQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYK--------- 58
Query: 62 KEKFSGHWYPGKPLKGSAFRCLKTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVDP 121
GS FRC+ G+ +DPV+E A++ESG+ I DV NLP +L+VW+DP
Sbjct: 59 ---------------GSGFRCIHIGEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDP 103
Query: 122 GEVT 125
EV+
Sbjct: 104 FEVS 107
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics,
PSI- 2, protein structure initiative; 1.70A {Homo
sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Length = 120
Score = 128 bits (322), Expect = 7e-37
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 26/126 (20%)
Query: 2 MHVEIQVALNFVISYLYNK--LPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNK 59
M EI A+ F+ S L + + +R+ +F L++AL E + HW+P KP K
Sbjct: 2 MLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPSK------- 54
Query: 60 ALKEKFSGHWYPGKPLKGSAFRCLKTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWV 119
GS +RC++ +DP++ A + G++ + + LPSEL +WV
Sbjct: 55 -----------------GSGYRCIRINHKMDPIISRVASQIGLSQPQLHQLLPSELTLWV 97
Query: 120 DPGEVT 125
DP EV+
Sbjct: 98 DPYEVS 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 5e-06
Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 82/223 (36%)
Query: 9 ALNFVISYLYNKLPRRRVNIFGEELEKALKEKFS---------GHWYPGKPLKD------ 53
F I + P FG E K ++E +S G K K+
Sbjct: 1656 TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 54 -----------SSTNN-------------KALKEK--------FSGHWYPGKPLKG--SA 79
S+T + LK K F+GH L G +A
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH-----SL-GEYAA 1769
Query: 80 FRCLKTGDPIDPVLEI-AARESGVAIQDVL---ENLPSELAVW-VDPGEV----TGDPID 130
L I+ ++E+ R G+ +Q + E S + ++PG V + + +
Sbjct: 1770 LASLADVMSIESLVEVVFYR--GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ 1827
Query: 131 PVLEIAARESGVAIQDVLE----NLPSE---LAVWVDPGEVRG 166
V+E + +G ++E N+ ++ A G++R
Sbjct: 1828 YVVERVGKRTG----WLVEIVNYNVENQQYVAA-----GDLRA 1861
Score = 37.7 bits (87), Expect = 0.005
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 22/110 (20%)
Query: 106 DVLENLPSELAVWVDPGEVTGDPIDPVLEIAARES-GVAIQDVLENLPSELAVWVDPGEV 164
D+ + + VW + D +++ G +I D++ N P L + +
Sbjct: 1634 DLYKTSKAAQDVW--------NRADNHF----KDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 165 RGEREIATADPSLHAAAMDREVHKTFNPEAR-VFRPVEVCLASLSLNGEE 213
+ RE + +AM E + +F+ + S + E+
Sbjct: 1682 KRIRE--------NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Score = 32.7 bits (74), Expect = 0.19
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 15/118 (12%)
Query: 101 GVAIQDVLENLPSELAVWVDPGEVTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVD 160
G +I D++ N P L + G G I E+ V + E + E+
Sbjct: 1658 GFSILDIVINNPVNLTIH--FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 161 PGEVRGEREI--AT--ADPSLHAA--AMDREVHKTFNPEARVFRPVEVCLASLSLNGE 212
R E+ + AT P+L A ++ +++ P + A SL GE
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEKAAFEDL------KSKGLIPADATFAGHSL-GE 1766
Score = 28.9 bits (64), Expect = 2.8
Identities = 39/260 (15%), Positives = 71/260 (27%), Gaps = 94/260 (36%)
Query: 61 LKEKFSGHWYPGKPLKGSAFRCLKTGDPIDPVLEIAARESG-VAIQDVLENLPSELAVWV 119
L+E+F+ P +P +G A +P P E+ + G V+ V
Sbjct: 33 LQEQFN-KILP-EPTEGFA----ADDEPTTPA-ELVGKFLGYVSSL-------------V 72
Query: 120 DPGEVTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVRGEREIATADPSLH- 178
+P +V D VL + E LE +I H
Sbjct: 73 EPSKVG--QFDQVLNLCLTE---FENCYLEG-----------------NDI-------HA 103
Query: 179 -AAAMDREVHKTFNPEARVFRP-VEVCLASLSLNGEERSASPSPTKGSPTFLPRSTAPLT 236
AA + +E T + + + + + P K +
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMA---------KRPFDKKSNSALFRAVGEGNA 154
Query: 237 FTTASFA-QTKFGSTKLKTNSKRTNRMSPTEFSNYIKQRALLQQQHNNHPQPSLPP---- 291
A F Q G+T +Y ++ L+ + +
Sbjct: 155 QLVAIFGGQ---GNT-----------------DDYFEE---LRDLYQ-TYHVLVGDLIKF 190
Query: 292 ---TLSNFLHSPGAQSPHYS 308
TLS + + ++
Sbjct: 191 SAETLSELIRTTLDAEKVFT 210
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.004
Identities = 42/314 (13%), Positives = 84/314 (26%), Gaps = 108/314 (34%)
Query: 17 LYNKLPRRRVNIFGEELEKALKEKFSGHWYP-------GKP-LKDSSTNNKALKEKFSG- 67
++ K R+ + +L +AL E GK + + ++ K
Sbjct: 125 VFAKYNVSRLQPY-LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 68 -HWYPGKPLKGSAFRCLKTGDPIDPVLEIAARESGVAIQDVLENLPSELA-VWVDPGEVT 125
W L + S + ++L+ L ++ W + +
Sbjct: 184 IFW-----------------------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 126 GDPIDPVLEIAARESGVAIQ-------DVLENLPSELAVWVDPGEVRGEREIATADPSLH 178
+ + I A + VL N V
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLN------VQ-------------------- 254
Query: 179 AAAMDREVHKTFNPEARVF---RPVEVCLA-------SLSLNGEERSASPSPTKG----- 223
+ + FN ++ R +V +SL+ + +P K
Sbjct: 255 ----NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 224 ---SPTFLPR---STAPLTFTTASFAQT------------KFGSTKLKTNSKRT-NRMSP 264
P LPR +T P + A++ KL T + + N + P
Sbjct: 311 LDCRPQDLPREVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 265 TEFSNYIKQRALLQ 278
E+ + ++
Sbjct: 369 AEYRKMFDRLSVFP 382
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural
genomics consortium, SGC, WD repeat, acetylation,
ATP-binding; 1.90A {Homo sapiens}
Length = 304
Score = 34.7 bits (79), Expect = 0.031
Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 1/93 (1%)
Query: 211 GEERSASPSPTKGSPTFLPRSTAPLTFTTASFAQTKFGSTKLKTNSKRTNRMSPTEFSNY 270
+ + +K + P+ +TF A+ Q +L + +++ +
Sbjct: 27 TGNSAYRSAASKTMNIYFPKKE-AVTFDQANPTQILGKLKELNGTAPEEKKLTEDDLILL 85
Query: 271 IKQRALLQQQHNNHPQPSLPPTLSNFLHSPGAQ 303
K +L+ + P L ++ P
Sbjct: 86 EKILSLICNSSSEKPTVQQLQILWKAINCPEDI 118
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 30.4 bits (68), Expect = 0.93
Identities = 29/111 (26%), Positives = 40/111 (36%), Gaps = 15/111 (13%)
Query: 216 ASPSPTKGSPTFLPRSTAPLTFTTASFAQTKFGSTKLKTNSKRTNRMSPTEFSNYIKQRA 275
+SP + SPT+ P S A + + + S + S + SPT
Sbjct: 1538 SSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--------- 1588
Query: 276 LLQQQHNNHPQPS-LPPTLSNFLHSPGAQSPHYSPNTPSGNTARSLSPSYY 325
P S P+ S S SP YSP +PS + SPSY
Sbjct: 1589 --PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT---SPSYS 1634
Score = 29.3 bits (65), Expect = 2.6
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 14/121 (11%)
Query: 216 ASPSPTKGSPTFLPRSTAPLTFTTASFAQTKFGSTKLKTNSKRTNRMSPT--EFSNYIKQ 273
SP+ + SP++ P S + + + + S + S + SPT +S
Sbjct: 1552 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1611
Query: 274 RALLQQQHNNH------PQPSLPPTLSNFLHSPGAQSP---HYSPNTPSGNTARSLSPSY 324
+ ++ PS PT ++ + + SP YSP +P+ + SPSY
Sbjct: 1612 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS---PTSPSY 1668
Query: 325 Y 325
Sbjct: 1669 S 1669
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA
synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP:
d.104.1.1 PDB: 1usy_C*
Length = 275
Score = 28.9 bits (65), Expect = 2.3
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 133 LEIAARESGVAIQDVLENLPSELAVWVDPGEVRG 166
L ++ RE ++ L+ ++V +D R
Sbjct: 197 LPLSVREDLLSASSFLQEKFPTVSVEIDLTLART 230
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 29.3 bits (65), Expect = 2.5
Identities = 23/122 (18%), Positives = 34/122 (27%), Gaps = 14/122 (11%)
Query: 205 ASLSLNGEERSASPSPTKGSPTFLPRSTAPLTFTTASFAQTKFGSTKLKTNSKRTNRMSP 264
+ + + + F P G+ S SP
Sbjct: 1483 GTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAA-----SPYKGVQSP 1537
Query: 265 TEFSNYIKQRALLQQQHNNHPQPSLPPTLSNFLHSPG--AQSPHYSPNTPSGNTARSLSP 322
S + + PS P+ + SP SP YSP +PS + SP
Sbjct: 1538 GYTSPFSSAMSP----GYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYS---PTSP 1590
Query: 323 SY 324
SY
Sbjct: 1591 SY 1592
>4evf_A Alpha-1 giardin, giardin subunit alpha-1; annexin, calcium-binding
protein, membrane-binding protein, binding protein;
1.90A {Giardia intestinalis} PDB: 4evh_A
Length = 295
Score = 28.6 bits (64), Expect = 3.2
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 27 NIFGEELEKALKEKFSGH 44
G+ +E+A+ ++
Sbjct: 195 AQNGKSIEQAIATIYTKT 212
>3hlx_A Pyrroloquinoline-quinone synthase; PQQC, PQQ biosynthesis, oxidase,
complex, all helical, oxido; HET: PQQ; 1.30A {Klebsiella
pneumoniae subsp} PDB: 3hml_A* 1otv_A 3hnh_A* 1otw_A*
Length = 258
Score = 28.2 bits (62), Expect = 3.4
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 259 TNRMSPTEFSNYIKQRALLQQQHNNHP 285
T+ +SP F + RA H +HP
Sbjct: 4 TDTLSPQAFEEAL--RAKGDFYHIHHP 28
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 28.1 bits (63), Expect = 4.2
Identities = 7/85 (8%), Positives = 24/85 (28%), Gaps = 11/85 (12%)
Query: 84 KTGDPIDPVLEIAARESGVAIQDVL-----------ENLPSELAVWVDPGEVTGDPIDPV 132
+ ++ +L+ + +++ E+ E + +T D + +
Sbjct: 55 AFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITLDILSEM 114
Query: 133 LEIAARESGVAIQDVLENLPSELAV 157
A + + L +
Sbjct: 115 QSEALEKLKENGKTPLHIFSKRYLL 139
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA
recognition motif, G-tract, G-quadruplex, alternative
splicing, RNA binding protein; NMR {Homo sapiens} PDB:
2kg0_A
Length = 126
Score = 27.2 bits (60), Expect = 4.7
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 279 QQHNNHPQPSLPPTLSNFLHSPGAQSPHYSPNTPSGNTARSL 320
H++H L P S+ G Q N+ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSNSADSANDGFV 45
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 7.7
Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 50/139 (35%)
Query: 84 KTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVTG---------DPIDP--- 131
KT +P+D ++ A+ +LE+ +G + +P
Sbjct: 880 KTKEPVDDK-DVKAKYE----TSILEH--------------SGIRLIEPELFNGYNPEKK 920
Query: 132 --VLEIAARESG---VAIQDVLENLPSEL----AVWVDPGE----VRGEREIATADPSLH 178
+ E+ E A ++ E + ++ P V+ + P
Sbjct: 921 EMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPK-- 978
Query: 179 AAAMDR----EVHKTFNPE 193
A DR ++ +N +
Sbjct: 979 ALRFDRLVAGQIPTGWNAK 997
>2hqv_A AGR_C_4470P; NESG, ATR92, Q7CX01_AGRT5, structural genomics, PSI-2,
protein structure initiative; 2.00A {Agrobacterium
tumefaciens str} SCOP: e.62.1.2
Length = 195
Score = 26.9 bits (59), Expect = 8.1
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 79 AFRCLKTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVTGDPIDPVLE 134
P D ++E A ++ VA ++L LP AV D D +
Sbjct: 28 RALAALAEKP-DGIVEAIAAKAEVAPAEILAILPQGAAVSAP-----ADRFDAIWN 77
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, PSI-BIO; 2.30A
{Alicyclobacillus acidocaldarius subsp}
Length = 373
Score = 26.9 bits (60), Expect = 9.9
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 12/91 (13%)
Query: 88 PIDPVLEIAARESGVAIQDVLENLPSELAVWVDPGEVTGDPIDPVLEIAARESGVA-IQD 146
+ ++ A + + ++L P+E E + ++ +L A A ++D
Sbjct: 220 QFRELWQLHAAKDVDLLANLLTWSPAERDAAKRSREASDRELEALLRDAVDPRAAADVRD 279
Query: 147 VLENL-----------PSELAVWVDPGEVRG 166
L + V D R
Sbjct: 280 AWRYLCRLAEALHDSGLASDVVTFDLALHRE 310
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.386
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,219,461
Number of extensions: 319411
Number of successful extensions: 702
Number of sequences better than 10.0: 1
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 33
Length of query: 339
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 245
Effective length of database: 4,077,219
Effective search space: 998918655
Effective search space used: 998918655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.3 bits)