RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1522
(339 letters)
>d2z15a1 d.370.1.1 (A:10-126) TOB1, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 150 bits (381), Expect = 5e-46
Identities = 68/124 (54%), Positives = 84/124 (67%), Gaps = 24/124 (19%)
Query: 2 MHVEIQVALNFVISYLYNKLPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNKAL 61
M +EIQVALNF+ISYLYNKLPRRRVNIFGEELE+ LK+K+ GHWYP KP K
Sbjct: 1 MQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYK--------- 51
Query: 62 KEKFSGHWYPGKPLKGSAFRCLKTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWVDP 121
GS FRC+ G+ +DPV+E A++ESG+ I DV NLP +L+VW+DP
Sbjct: 52 ---------------GSGFRCIHIGEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDP 96
Query: 122 GEVT 125
EV+
Sbjct: 97 FEVS 100
>d3e9va1 d.370.1.1 (A:9-128) NGF-inducible anti-proliferative
protein PC3 (BTG2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 137 bits (347), Expect = 5e-41
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 26/126 (20%)
Query: 2 MHVEIQVALNFVISYLYNK--LPRRRVNIFGEELEKALKEKFSGHWYPGKPLKDSSTNNK 59
M EI A+ F+ S L + + +R+ +F L++AL E + HW+P KP K
Sbjct: 2 MLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPSK------- 54
Query: 60 ALKEKFSGHWYPGKPLKGSAFRCLKTGDPIDPVLEIAARESGVAIQDVLENLPSELAVWV 119
GS +RC++ +DP++ A + G++ + + LPSEL +WV
Sbjct: 55 -----------------GSGYRCIRINHKMDPIISRVASQIGLSQPQLHQLLPSELTLWV 97
Query: 120 DPGEVT 125
DP EV+
Sbjct: 98 DPYEVS 103
>d2ie7a1 a.65.1.1 (A:2-319) Annexin V {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 318
Score = 31.5 bits (71), Expect = 0.12
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 28 IFGEELEKALKEKFSGH-------WYPGKPLKDSSTNNKALKEKFSGHW 69
+FG +L +K + +G L D+ ALK +
Sbjct: 57 LFGRDLVNDMKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEK 105
>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal
domain {Desulfovibrio gigas [TaxId: 879]}
Length = 80
Score = 28.2 bits (63), Expect = 0.36
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 206 SLSLNGEERSASPSPTKGSPTFLPRSTAPLTFTTASFAQTKFGSTKLKTNSKRTN 260
+++NG E++ L R LT Q + G+ + + K
Sbjct: 5 VITVNGIEQNLFVDAEALLSDVL-RQQLGLTGVKVGCEQGQCGACSVILDGKVVR 58
>d1i4aa_ a.65.1.1 (A:) Annexin IV {Cow (Bos taurus) [TaxId: 9913]}
Length = 309
Score = 29.6 bits (66), Expect = 0.48
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 28 IFGEELEKALKEKFSGH-------WYPGKPLKDSSTNNKALKEKFSGHW 69
G +L LK + SG+ L D KA+K +
Sbjct: 49 TIGRDLMDDLKSELSGNFEQVILGMMTPTVLYDVQELRKAMKGAGTDEG 97
>d1axna_ a.65.1.1 (A:) Annexin III {Human (Homo sapiens) [TaxId:
9606]}
Length = 323
Score = 29.6 bits (66), Expect = 0.49
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 28 IFGEELEKALKEKFSGH-------WYPGKPLKDSSTNNKALKEKFSGHW 69
+G+EL+ LK SGH + D+ K++K +
Sbjct: 63 AYGKELKDDLKGDLSGHFEHLMVALVTPPAVFDAKQLKKSMKGAGTNED 111
>d1n00a_ a.65.1.1 (A:) Annexin GH1 {Cotton (Gossypium hirsutum)
[TaxId: 3635]}
Length = 318
Score = 28.8 bits (64), Expect = 1.0
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 28 IFGEELEKALKEKFSGH-------WYPGKPLKDSSTNNKALK 62
+GE+L KAL ++ S W +D+ N+A K
Sbjct: 58 TYGEDLLKALDKELSNDFERLVLLWALDPAERDALLANEATK 99
>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit
QorS, N-domain {Pseudomonas putida [TaxId: 303]}
Length = 81
Score = 26.7 bits (59), Expect = 1.1
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 206 SLSLNGEERSASPSPTKGSPTFLPRSTAPLTFTTASFAQTKFGSTKLKTNSKRTN 260
S ++NG+ R P L R LT T Q GS + +
Sbjct: 7 SATINGKPRVFYVEPRMHLADAL-REVVGLTGTKIGCEQGVCGSCTILIDGAPMR 60
>d1q7ha2 d.17.6.2 (A:3-68) Hypothetical protein Ta1423, N-terminal
domain {Archaeon Thermoplasma acidophilum [TaxId:
2303]}
Length = 66
Score = 25.8 bits (56), Expect = 2.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 16 YLYNKLPRRRVNIFGEELEKALKEKFSGHWYPGKPL 51
++ ++ R ++I GE LE A ++ S ++ GKP+
Sbjct: 12 RIWEQMSRYGIDITGESLEVAAQKSASAYYIGGKPM 47
>d1hm6a_ a.65.1.1 (A:) Annexin I {Pig (Sus scrofa) [TaxId: 9823]}
Length = 343
Score = 27.7 bits (61), Expect = 2.3
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 28 IFGEELEKALKEKFSGH-------WYPGKPLKDSSTNNKAL 61
G+ L++ALK+ +GH D+ A+
Sbjct: 86 EKGKPLDEALKKALTGHLEEVALALLKTPAQFDADELRAAM 126
>d1avca1 a.65.1.1 (A:10-350) Annexin VI {Cow (Bos taurus) [TaxId:
9913]}
Length = 341
Score = 27.6 bits (61), Expect = 2.4
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 28 IFGEELEKALKEKFSGH 44
++G++L LK + +G
Sbjct: 56 LYGKDLIADLKYELTGK 72
>d1bo9a_ a.65.1.1 (A:) Annexin I {Human (Homo sapiens) [TaxId:
9606]}
Length = 73
Score = 25.4 bits (56), Expect = 2.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 27 NIFGEELEKALKEKFSGH 44
G+ L++ LK+ +GH
Sbjct: 46 QETGKPLDETLKKALTGH 63
>d1avca2 a.65.1.1 (A:351-671) Annexin VI {Cow (Bos taurus) [TaxId:
9913]}
Length = 321
Score = 27.3 bits (60), Expect = 3.1
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 28 IFGEELEKALKEKFSGH 44
FG +L LK + SG
Sbjct: 58 HFGRDLMADLKSELSGD 74
>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 73
Score = 25.4 bits (56), Expect = 3.3
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 307 YSPNTPSGNTARS 319
Y P T +G
Sbjct: 60 YQPETVAGKAVMK 72
>d1w7ba_ a.65.1.1 (A:) Annexin II {Human (Homo sapiens) [TaxId:
9606]}
Length = 319
Score = 26.5 bits (58), Expect = 5.1
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 28 IFGEELEKALKEKFSGH 44
+EL ALK SGH
Sbjct: 58 RTKKELASALKSALSGH 74
>d1g99a1 c.55.1.2 (A:1-197) Acetate kinase {Archaeon Methanosarcina
thermophila [TaxId: 2210]}
Length = 197
Score = 25.8 bits (56), Expect = 7.2
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 161 PGEVRGEREIATADPSL-HAAAMDREVHKTFNPEARVF 197
P + G A P D H+T P A ++
Sbjct: 125 PPNMMGISACAEIMPGTPMVIVFDTAFHQTMPPYAYMY 162
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.386
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,269,703
Number of extensions: 60391
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 20
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.3 bits)