BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15220
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VS6|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|1VS8|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|3E1B|5 Chain 5, Structure Of The 50s Subunit Of E. Coli Ribosome In
Pre-Accommodation State
pdb|3E1D|5 Chain 5, Structure Of The 50s Subunit Of E. Coli Ribosome In
Post-Accommodation State
pdb|3I1N|I Chain I, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1P|I Chain I, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1R|I Chain I, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1T|I Chain I, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I20|I Chain I, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I22|I Chain I, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KCR|I Chain I, Ribosome-Secy Complex. This Entry 3kcr Contains 50s
Ribosomal Subnit. The 30s Ribosomal Subunit Can Be Found
In Pdb Entry 3kc4
pdb|1VT2|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3ORB|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The First
70s Ribosome Bound To Cem-101.
pdb|3IZT|J Chain J, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A
Near-Cognate Codon.
pdb|3IZU|J Chain J, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A Cognate
Codon
pdb|3SGF|I Chain I, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOS|I Chain I, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|4GAR|I Chain I, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAU|I Chain I, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 142
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/141 (58%), Positives = 108/141 (76%)
Query: 1 MVKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIIT 60
M KK+ ++KLQ+ AG ANPSPP+GPALGQ+G+NIMEFCK FNA+T IE G PIPV+IT
Sbjct: 1 MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVIT 60
Query: 61 VFSDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAA 120
V++D+SFTF K P L+KKAAGI+ GS KP+ DKVGK++ Q++EIA K D+T A
Sbjct: 61 VYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGA 120
Query: 121 SISAAMRTIAGSARSMGIIFD 141
I A R+I G+ARSMG++ +
Sbjct: 121 DIEAMTRSIEGTARSMGLVVE 141
>pdb|1P85|G Chain G, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
pdb|1P86|G Chain G, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2AW4|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2AWB|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
pdb|2I2T|I Chain I, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2V|I Chain I, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2J28|I Chain I, Model Of E. Coli Srp Bound To 70s Rncs
pdb|2QOV|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The First 70s Ribosome.
The Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|2QOX|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The Second 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QOZ|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
First 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QP1|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QAM|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QAO|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBA|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBC|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBE|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
First 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QBG|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QBI|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The First 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2QBK|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The Second 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4L|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The First 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
pdb|2Z4N|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The Second 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
pdb|2VHM|I Chain I, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 1 Of 4)
pdb|2VHN|I Chain I, Structure Of Pdf Binding Helix In Complex With The
Ribosome. (Part 2 Of 4)
pdb|2RDO|I Chain I, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
pdb|3DEG|H Chain H, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
pdb|3DF2|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 50s Subunit Of The First 70s Ribosome. The
Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|3DF4|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 50s Subunit Of The Second 70s Ribosome. The
Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|3EP2|I Chain I, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|I Chain I, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|I Chain I, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIK|I Chain I, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 50s Subunit.
pdb|2WWQ|I Chain I, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 50s, The P-Site
Trna And The Tnac Leader Peptide (Part 2 Of 2).
pdb|3OFQ|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OFR|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
First 70s Ribosome With Erthromycin Bound.
pdb|3OFC|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The First 70s Ribosome With Chloramphenicol Bound.
pdb|3OFD|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The Second 70s Ribosome.
pdb|3OFZ|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
First 70s Ribosome Bound To Clindamycin.
pdb|3OG0|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OAS|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OAT|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of The
First 70s Ribosome With Telithromycin Bound.
pdb|3J01|I Chain I, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|3R8S|I Chain I, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3R8T|I Chain I, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3J0T|K Chain K, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0W|K Chain K, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0Y|K Chain K, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J11|K Chain K, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 3 Of The Six
Classes)
pdb|3J12|K Chain K, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J14|K Chain K, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 6 Of The Six
Classes)
pdb|3J0D|G Chain G, Models For The T. Thermophilus Ribosome Recycling Factor
Bound To The E. Coli Post-Termination Complex
pdb|3J19|I Chain I, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(50s Subunit)
Length = 141
Score = 180 bits (457), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 107/139 (76%)
Query: 3 KKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVF 62
KK+ ++KLQ+ AG ANPSPP+GPALGQ+G+NIMEFCK FNA+T IE G PIPV+ITV+
Sbjct: 2 KKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVY 61
Query: 63 SDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASI 122
+D+SFTF K P L+KKAAGI+ GS KP+ DKVGK++ Q++EIA K D+T A I
Sbjct: 62 ADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADI 121
Query: 123 SAAMRTIAGSARSMGIIFD 141
A R+I G+ARSMG++ +
Sbjct: 122 EAMTRSIEGTARSMGLVVE 140
>pdb|2GYA|G Chain G, Structure Of The 50s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYC|G Chain G, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 139
Score = 180 bits (457), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 107/139 (76%)
Query: 3 KKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVF 62
KK+ ++KLQ+ AG ANPSPP+GPALGQ+G+NIMEFCK FNA+T IE G PIPV+ITV+
Sbjct: 1 KKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVY 60
Query: 63 SDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASI 122
+D+SFTF K P L+KKAAGI+ GS KP+ DKVGK++ Q++EIA K D+T A I
Sbjct: 61 ADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADI 120
Query: 123 SAAMRTIAGSARSMGIIFD 141
A R+I G+ARSMG++ +
Sbjct: 121 EAMTRSIEGTARSMGLVVE 139
>pdb|1GIY|L Chain L, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1MJ1|L Chain L, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
pdb|1ML5|LL Chain l, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1YL3|L Chain L, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4.
pdb|2B66|K Chain K, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf1, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400
pdb|2B9N|K Chain K, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf2, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400.
pdb|2B9P|K Chain K, 50s Ribosomal Subunit From A Crystal Structure Of The
Ribosome In Complex With Trnas And Mrna With A Stop
Codon In The A-Site. This File Contains The 50s Subunit
From A Crystal Structure Of The Ribosome In Complex With
Trnas And Mrna With A Stop Codon In The A-Site And Is
Described In Remark 400.
pdb|2JQ7|A Chain A, Model For Thiostrepton Binding To The Ribosomal L11-Rna
pdb|2K3F|A Chain A, Ribosomal Protein L11 From Thermotoga Maritima
Length = 141
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/138 (60%), Positives = 104/138 (75%), Gaps = 1/138 (0%)
Query: 1 MVKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIIT 60
M KK+ IKLQ+PAGKA P+PP+GPALGQ G+NIMEFCK FNA+T + G +PV+IT
Sbjct: 1 MAKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVIT 59
Query: 61 VFSDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAA 120
V+ DKSFTF K P +FL+KKAAGI+KGS++P VGK+T QI+EIA K DL A
Sbjct: 60 VYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNAN 119
Query: 121 SISAAMRTIAGSARSMGI 138
S+ AAM+ I G+A+SMGI
Sbjct: 120 SLEAAMKIIEGTAKSMGI 137
>pdb|1EG0|K Chain K, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
Length = 140
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/138 (60%), Positives = 104/138 (75%), Gaps = 1/138 (0%)
Query: 1 MVKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIIT 60
M KK+ IKLQ+PAGKA P+PP+GPALGQ G+NIMEFCK FNA+T + G +PV+IT
Sbjct: 1 MAKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVIT 59
Query: 61 VFSDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAA 120
V+ DKSFTF K P +FL+KKAAGI+KGS++P VGK+T QI+EIA K DL A
Sbjct: 60 VYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNAN 119
Query: 121 SISAAMRTIAGSARSMGI 138
S+ AAM+ I G+A+SMGI
Sbjct: 120 SLEAAMKIIEGTAKSMGI 137
>pdb|1MMS|A Chain A, Crystal Structure Of The Ribosomal Protein L11-Rna Complex
pdb|1MMS|B Chain B, Crystal Structure Of The Ribosomal Protein L11-Rna Complex
pdb|1MVR|L Chain L, Decoding Center & Peptidyl Transferase Center From The
X-Ray Structure Of The Thermus Thermophilus 70s
Ribosome, Aligned To The Low Resolution Cryo-Em Map Of
E.Coli 70s Ribosome
pdb|1OLN|A Chain A, Model For Thiostrepton Antibiotic Binding To L11 Substrate
From 50s Ribosomal Rna
Length = 140
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 103/136 (75%), Gaps = 1/136 (0%)
Query: 3 KKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVF 62
KK+ IKLQ+PAGKA P+PP+GPALGQ G+NIMEFCK FNA+T + G +PV+ITV+
Sbjct: 2 KKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVY 60
Query: 63 SDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASI 122
DKSFTF K P +FL+KKAAGI+KGS++P VGK+T QI+EIA K DL A S+
Sbjct: 61 EDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSL 120
Query: 123 SAAMRTIAGSARSMGI 138
AAM+ I G+A+SMGI
Sbjct: 121 EAAMKIIEGTAKSMGI 136
>pdb|1JQM|A Chain A, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
pdb|1JQS|A Chain A, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
pdb|1JQT|A Chain A, Fitting Of L11 Protein In The Low Resolution Cryo-Em Map
Of E.Coli 70s Ribosome
Length = 139
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 103/136 (75%), Gaps = 1/136 (0%)
Query: 3 KKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVF 62
KK+ IKLQ+PAGKA P+PP+GPALGQ G+NIMEFCK FNA+T + G +PV+ITV+
Sbjct: 2 KKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVY 60
Query: 63 SDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASI 122
DKSFTF K P +FL+KKAAGI+KGS++P VGK+T QI+EIA K DL A S+
Sbjct: 61 EDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSL 120
Query: 123 SAAMRTIAGSARSMGI 138
AAM+ I G+A+SMGI
Sbjct: 121 EAAMKIIEGTAKSMGI 136
>pdb|1NKW|G Chain G, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
pdb|1NWX|G Chain G, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
pdb|1NWY|G Chain G, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
pdb|1SM1|G Chain G, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
pdb|1XBP|G Chain G, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
pdb|2ZJP|F Chain F, Thiopeptide Antibiotic Nosiheptide Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|2ZJQ|F Chain F, Interaction Of L7 With L11 Induced By Microccocin Binding
To The Deinococcus Radiodurans 50s Subunit
pdb|2ZJR|F Chain F, Refined Native Structure Of The Large Ribosomal Subunit
(50s) From Deinococcus Radiodurans
pdb|3CF5|F Chain F, Thiopeptide Antibiotic Thiostrepton Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|3DLL|F Chain F, The Oxazolidinone Antibiotics Perturb The Ribosomal
Peptidyl-Transferase Center And Effect Trna Positioning
pdb|3PIO|F Chain F, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
pdb|3PIP|F Chain F, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
Length = 144
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/142 (56%), Positives = 105/142 (73%), Gaps = 5/142 (3%)
Query: 2 VKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQT--QGIELGTPIPVII 59
+KK+ G +KLQ+PAGKA P+PP+GPALGQ G NIMEF K FNAQT +G + IPV I
Sbjct: 1 MKKVAGIVKLQLPAGKATPAPPVGPALGQYGANIMEFTKAFNAQTADKGDAI---IPVEI 57
Query: 60 TVFSDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTA 119
T+++D+SFTF K P+++LI+KAAGI KGS+ P+ KVGKL + Q+ EIA K DL A
Sbjct: 58 TIYADRSFTFITKTPPMSYLIRKAAGIGKGSSTPNKAKVGKLNWDQVLEIAKTKMPDLNA 117
Query: 120 ASISAAMRTIAGSARSMGIIFD 141
S+ AA T+AG+ARSMG+ +
Sbjct: 118 GSVEAAANTVAGTARSMGVTVE 139
>pdb|487D|L Chain L, Seven Ribosomal Proteins Fitted To A Cryo-Electron
Microscopic Map Of The Large 50s Subunit At 7.5
Angstroms Resolution
pdb|1PN7|L Chain L, Coordinates Of S12, L11 Proteins And P-Trna, From The 70s
X- Ray Structure Aligned To The 70s Cryo-Em Map Of
E.Coli Ribosome
pdb|1PN8|L Chain L, Coordinates Of S12, L11 Proteins And E-Site Trna From 70s
Crystal Structure Separately Fitted Into The Cryo-Em Map
Of E.Coli 70s.Ef-G.Gdpnp Complex. The Atomic Coordinates
Originally From The E-Site Trna Were Fitted In The
Position Of The Hybrid PE-Site Trna
Length = 133
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/130 (61%), Positives = 100/130 (76%), Gaps = 1/130 (0%)
Query: 9 IKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFT 68
IKLQ+PAGKA P+PP+GPALGQ G+NIMEFCK FNA+T + G +PV+ITV+ DKSFT
Sbjct: 2 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVYEDKSFT 60
Query: 69 FKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRT 128
F K P +FL+KKAAGI+KGS++P VGK+T QI+EIA K DL A S+ AAM+
Sbjct: 61 FIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKI 120
Query: 129 IAGSARSMGI 138
I G+A+SMGI
Sbjct: 121 IEGTAKSMGI 130
>pdb|1PNU|G Chain G, Crystal Structure Of A Streptomycin Dependent Ribosome
From Escherichia Coli, 50s Subunit Of 70s Ribosome. This
File, 1pnu, Contains Only Molecules Of The 50s Ribosomal
Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site
Trna Are In The Pdb File 1pns.
pdb|1PNY|G Chain G, Crystal Structure Of The Wild Type Ribosome From E. Coli,
50s Subunit Of 70s Ribosome. This File, 1pny, Contains
Only Molecules Of The 50s Ribosomal Subunit. The 30s
Subunit Is In The Pdb File 1pnx.
pdb|1VOR|J Chain J, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOU|J Chain J, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOW|J Chain J, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOY|J Chain J, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VP0|J Chain J, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400
Length = 143
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/142 (56%), Positives = 105/142 (73%), Gaps = 5/142 (3%)
Query: 2 VKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQT--QGIELGTPIPVII 59
+KK+ G +KLQ+PAGKA P+PP+GPALGQ G NIMEF K FNAQT +G + IPV I
Sbjct: 1 MKKVAGIVKLQLPAGKATPAPPVGPALGQYGANIMEFTKAFNAQTADKGDAI---IPVEI 57
Query: 60 TVFSDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTA 119
T+++D+SFTF K P+++LI+KAAGI KGS+ P+ KVGKL + Q+ EIA K DL A
Sbjct: 58 TIYADRSFTFITKTPPMSYLIRKAAGIGKGSSTPNKAKVGKLNWDQVLEIAKTKMPDLNA 117
Query: 120 ASISAAMRTIAGSARSMGIIFD 141
S+ AA T+AG+ARSMG+ +
Sbjct: 118 GSVEAAANTVAGTARSMGVTVE 139
>pdb|1R2W|A Chain A, Coordinates Of L11 With 58nts Of 23s Rrna Fitted Into The
Cryo-Em Map Of The 70s Ribosome
pdb|1R2X|A Chain A, Coordinates Of L11 With 58nts Of 23s Rrna Fitted Into The
Cryo-Em Map Of Ef-Tu Ternary Complex (Gdp.Kirromycin)
Bound 70s Ribosome
Length = 141
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 103/137 (75%), Gaps = 2/137 (1%)
Query: 3 KKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVF 62
KK+ IKLQ+PAGKA P+PP+GPALGQ G+NIMEFCK FNA+T + G +PV+ITV+
Sbjct: 2 KKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVY 60
Query: 63 SDKSFTFKKKVT-PVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAAS 121
DKSFTF K P +FL+KKAAGI+KGS++P VGK+T QI+EIA K DL A S
Sbjct: 61 EDKSFTFIIKTEPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANS 120
Query: 122 ISAAMRTIAGSARSMGI 138
+ AAM+ I G+A+SMGI
Sbjct: 121 LEAAMKIIEGTAKSMGI 137
>pdb|2J01|K Chain K, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
This File Contains The 50s Subunit From Molecule I.
pdb|2J03|K Chain K, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
This File Contains The 50s Subunit From Molecule Ii.
pdb|2HGJ|L Chain L, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
pdb|2HGQ|L Chain L, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
pdb|2HGU|L Chain L, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|2NXN|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2H8W|A Chain A, Solution Structure Of Ribosomal Protein L11
pdb|2E34|A Chain A, L11 Structure With Rdc And Rg Refinement
pdb|2E35|A Chain A, The Minimized Average Structure Of L11 With Rg Refinement
pdb|2E36|A Chain A, L11 With Sans Refinement
pdb|3CJT|B Chain B, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|D Chain D, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|F Chain F, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|H Chain H, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|J Chain J, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|L Chain L, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|N Chain N, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|P Chain P, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3F1F|K Chain K, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|K Chain K, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400.
pdb|2WH2|K Chain K, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH4|K Chain K, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2KLM|A Chain A, Solution Structure Of L11 With Saxs And Rdc
pdb|2WRJ|K Chain K, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of 4).
pdb|2WRL|K Chain K, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|3I8I|L Chain L, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|2X9S|K Chain K, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|K Chain K, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XTG|K Chain K, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|K Chain K, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
Length = 147
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/137 (54%), Positives = 99/137 (72%), Gaps = 1/137 (0%)
Query: 2 VKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITV 61
+KK+ +KLQ+PAGKA P+PP+GPALGQ G NIMEF K FNA T + +PV IT+
Sbjct: 1 MKKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAI-VPVEITI 59
Query: 62 FSDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAAS 121
++D+SFTF K P ++LI+KAAG++KG+ KP +KVG++T+ Q+ EIA K DL
Sbjct: 60 YADRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTD 119
Query: 122 ISAAMRTIAGSARSMGI 138
+ AA R IAGSARSMG+
Sbjct: 120 LEAAARMIAGSARSMGV 136
>pdb|3FIN|L Chain L, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit
Length = 138
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 98/136 (72%), Gaps = 1/136 (0%)
Query: 3 KKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVF 62
KK+ +KLQ+PAGKA P+PP+GPALGQ G NIMEF K FNA T + +PV IT++
Sbjct: 1 KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAI-VPVEITIY 59
Query: 63 SDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASI 122
+D+SFTF K P ++LI+KAAG++KG+ KP +KVG++T+ Q+ EIA K DL +
Sbjct: 60 ADRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDL 119
Query: 123 SAAMRTIAGSARSMGI 138
AA R IAGSARSMG+
Sbjct: 120 EAAARMIAGSARSMGV 135
>pdb|3CJR|B Chain B, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin
Length = 147
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 98/137 (71%), Gaps = 1/137 (0%)
Query: 2 VKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITV 61
+KK+ +KLQ+PAGKA P+PP+GPALGQ G NIMEF FNA T + +PV IT+
Sbjct: 1 MKKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVAAFNAATANMGDAI-VPVEITI 59
Query: 62 FSDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAAS 121
++D+SFTF K P ++LI+KAAG++KG+ KP +KVG++T+ Q+ EIA K DL
Sbjct: 60 YADRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTD 119
Query: 122 ISAAMRTIAGSARSMGI 138
+ AA R IAGSARSMG+
Sbjct: 120 LEAAARMIAGSARSMGV 136
>pdb|3CJQ|B Chain B, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|E Chain E, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|H Chain H, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
Length = 146
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 97/136 (71%), Gaps = 1/136 (0%)
Query: 3 KKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVF 62
KK+ +KLQ+PAGKA P+PP+GPALGQ G NIMEF FNA T + +PV IT++
Sbjct: 1 KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVAAFNAATANMGDAI-VPVEITIY 59
Query: 63 SDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASI 122
+D+SFTF K P ++LI+KAAG++KG+ KP +KVG++T+ Q+ EIA K DL +
Sbjct: 60 ADRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDL 119
Query: 123 SAAMRTIAGSARSMGI 138
AA R IAGSARSMG+
Sbjct: 120 EAAARMIAGSARSMGV 135
>pdb|3FIK|5 Chain 5, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 50s Subunit.
pdb|3KCR|5 Chain 5, Ribosome-Secy Complex. This Entry 3kcr Contains 50s
Ribosomal Subnit. The 30s Ribosomal Subunit Can Be Found
In Pdb Entry 3kc4
pdb|2WWQ|5 Chain 5, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 50s, The P-Site
Trna And The Tnac Leader Peptide (Part 2 Of 2).
pdb|3IZT|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A
Near-Cognate Codon.
pdb|3IZU|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A Cognate
Codon
pdb|3J01|5 Chain 5, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|3J0T|C Chain C, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0W|C Chain C, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0Y|C Chain C, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J11|C Chain C, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 3 Of The Six
Classes)
pdb|3J12|C Chain C, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J14|C Chain C, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 6 Of The Six
Classes)
Length = 234
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 108/147 (73%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYI 200
D K Y + AI L+KE ATAKF ES+D++++L ++ ++SDQ VRG+ VLP TG+ + +
Sbjct: 16 DATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRV 75
Query: 201 AAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPKG 260
A F E AK AGA++VGMEDLA +IK E++ D+VIASP++M +V LG++LGP+G
Sbjct: 76 AVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRG 135
Query: 261 LMPNIKDGTLNSDILTAIKNAKSGQIR 287
LMPN K GT+ ++ A+KNAK+GQ+R
Sbjct: 136 LMPNPKVGTVTPNVAEAVKNAKAGQVR 162
>pdb|2RDO|9 Chain 9, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 233
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 108/147 (73%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYI 200
D K Y + AI L+KE ATAKF ES+D++++L ++ ++SDQ VRG+ VLP TG+ + +
Sbjct: 15 DATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRV 74
Query: 201 AAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPKG 260
A F E AK AGA++VGMEDLA +IK E++ D+VIASP++M +V LG++LGP+G
Sbjct: 75 AVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRG 134
Query: 261 LMPNIKDGTLNSDILTAIKNAKSGQIR 287
LMPN K GT+ ++ A+KNAK+GQ+R
Sbjct: 135 LMPNPKVGTVTPNVAEAVKNAKAGQVR 161
>pdb|2GYA|2 Chain 2, Structure Of The 50s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYC|2 Chain 2, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 222
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 108/147 (73%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYI 200
D K Y + AI L+KE ATAKF ES+D++++L ++ ++SDQ VRG+ VLP TG+ + +
Sbjct: 11 DATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRV 70
Query: 201 AAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPKG 260
A F E AK AGA++VGMEDLA +IK E++ D+VIASP++M +V LG++LGP+G
Sbjct: 71 AVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRG 130
Query: 261 LMPNIKDGTLNSDILTAIKNAKSGQIR 287
LMPN K GT+ ++ A+KNAK+GQ+R
Sbjct: 131 LMPNPKVGTVTPNVAEAVKNAKAGQVR 157
>pdb|3BBO|K Chain K, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 224
Score = 143 bits (361), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 76/139 (54%), Positives = 98/139 (70%), Gaps = 1/139 (0%)
Query: 3 KKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVF 62
KK+ G IKL + AGKA P+PP+GPALG +G+NIM FCK++NA+T + G IPV ITVF
Sbjct: 74 KKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KPGFVIPVEITVF 132
Query: 63 SDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASI 122
DKSFTF K P + L+ KA+G +KGS P +KVGK+T Q++ IAT K DL +I
Sbjct: 133 DDKSFTFILKTPPASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLNCTTI 192
Query: 123 SAAMRTIAGSARSMGIIFD 141
+AMR IAG+A +MGI D
Sbjct: 193 ESAMRIIAGTAANMGIDID 211
>pdb|1AD2|A Chain A, Ribosomal Protein L1 Mutant With Serine 179 Replaced By
Cysteine
Length = 228
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYI 200
D NKIY+ D A L+KE ATAKFDE++++ L ++ +RSDQ VRG++ LP GK++ +
Sbjct: 15 DPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRV 74
Query: 201 AAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSS-LGKILGPK 259
A EK ++A+ AGAD VG E++ QKI + D V+A+P+ M V S LG+ILGP+
Sbjct: 75 LAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPR 134
Query: 260 GLMPNIKDGTLNSDILTAIKNAKSGQI 286
GL+PN K GT+ +I I+ K+G+I
Sbjct: 135 GLLPNPKAGTVGFNIGEIIREIKAGRI 161
>pdb|1EG0|N Chain N, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
pdb|2HGJ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
pdb|2HGQ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
pdb|2HGU|C Chain C, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|1VSA|A Chain A, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|1VSP|A Chain A, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3U4M|A Chain A, Crystal Structure Of Ribosomal Protein Tthl1 In Complex
With 80nt 23s Rna From Thermus Thermophilus
Length = 229
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYI 200
D NKIY+ D A L+KE ATAKFDE++++ L ++ +RSDQ VRG++ LP GK++ +
Sbjct: 16 DPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRV 75
Query: 201 AAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSS-LGKILGPK 259
A EK ++A+ AGAD VG E++ QKI + D V+A+P+ M V S LG+ILGP+
Sbjct: 76 LAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPR 135
Query: 260 GLMPNIKDGTLNSDILTAIKNAKSGQI 286
GL+PN K GT+ +I I+ K+G+I
Sbjct: 136 GLLPNPKAGTVGFNIGEIIREIKAGRI 162
>pdb|1GIY|C Chain C, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1ML5|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1YL3|C Chain C, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4
Length = 228
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYI 200
D NKIY+ D A L+KE ATAKFDE++++ L ++ +RSDQ VRG++ LP GK++ +
Sbjct: 15 DPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRV 74
Query: 201 AAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSS-LGKILGPK 259
A EK ++A+ AGAD VG E++ QKI + D V+A+P+ M V S LG+ILGP+
Sbjct: 75 LAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPR 134
Query: 260 GLMPNIKDGTLNSDILTAIKNAKSGQI 286
GL+PN K GT+ +I I+ K+G+I
Sbjct: 135 GLLPNPKAGTVGFNIGEIIREIKAGRI 161
>pdb|4F9T|A Chain A, Ribosomal Protein L1 From Thermus Thermophilus With
Substitution Thr217ala
Length = 229
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYI 200
D NKIY+ D A L+KE ATAKFDE++++ L ++ +RSDQ VRG++ LP GK++ +
Sbjct: 16 DPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRV 75
Query: 201 AAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSS-LGKILGPK 259
A EK ++A+ AGAD VG E++ QKI + D V+A+P+ M V S LG+ILGP+
Sbjct: 76 LAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPR 135
Query: 260 GLMPNIKDGTLNSDILTAIKNAKSGQI 286
GL+PN K GT+ +I I+ K+G+I
Sbjct: 136 GLLPNPKAGTVGFNIGEIIREIKAGRI 162
>pdb|3UMY|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217a Tthl1
In Complex With 80nt 23s Rna From Thermus Thermophilus
Length = 228
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYI 200
D NKIY+ D A L+KE ATAKFDE++++ L ++ +RSDQ VRG++ LP GK++ +
Sbjct: 15 DPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRV 74
Query: 201 AAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSS-LGKILGPK 259
A EK ++A+ AGAD VG E++ QKI + D V+A+P+ M V S LG+ILGP+
Sbjct: 75 LAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPR 134
Query: 260 GLMPNIKDGTLNSDILTAIKNAKSGQI 286
GL+PN K GT+ +I I+ K+G+I
Sbjct: 135 GLLPNPKAGTVGFNIGEIIREIKAGRI 161
>pdb|3U42|A Chain A, Mutant Ribosomal Protein L1 From Thermus Thermophilus With
Threonine 217 Replaced By Valine
pdb|3U56|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217v Tthl1
In Complex With 80nt 23s Rna From Thermus Thermophilus
Length = 229
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYI 200
D NKIY+ D A L+KE ATAKFDE++++ L ++ +RSDQ VRG++ LP GK++ +
Sbjct: 16 DPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRV 75
Query: 201 AAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSS-LGKILGPK 259
A EK ++A+ AGAD VG E++ QKI + D V+A+P+ M V S LG+ILGP+
Sbjct: 76 LAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPR 135
Query: 260 GLMPNIKDGTLNSDILTAIKNAKSGQI 286
GL+PN K GT+ +I I+ K+G+I
Sbjct: 136 GLLPNPKAGTVGFNIGEIIREIKAGRI 162
>pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cryo-Electron
Microscopic Map Of The Large 50s Subunit At 7.5
Angstroms Resolution
Length = 224
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYI 200
D NKIY+ D A L+KE ATAKFDE++++ L ++ +RSDQ VRG++ LP GK++ +
Sbjct: 11 DPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRV 70
Query: 201 AAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSS-LGKILGPK 259
A EK ++A+ AGAD VG E++ QKI + D V+A+P+ M V S LG+ILGP+
Sbjct: 71 LAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPR 130
Query: 260 GLMPNIKDGTLNSDILTAIKNAKSGQI 286
GL+PN K GT+ +I I+ K+G+I
Sbjct: 131 GLLPNPKAGTVGFNIGEIIREIKAGRI 157
>pdb|2J01|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
This File Contains The 50s Subunit From Molecule I.
pdb|2J03|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
This File Contains The 50s Subunit From Molecule Ii.
pdb|2V47|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2OM7|K Chain K, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WDI|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|C Chain C, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH4|C Chain C, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|3HUX|C Chain C, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|C Chain C, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|C Chain C, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of 4).
pdb|2WRL|C Chain C, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|C Chain C, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|C Chain C, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|C Chain C, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule I
pdb|3KNK|C Chain C, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|C Chain C, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|C Chain C, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|2X9S|C Chain C, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|C Chain C, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XG0|C Chain C, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|C Chain C, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|2XQE|C Chain C, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XTG|C Chain C, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|C Chain C, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|C Chain C, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|C Chain C, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|C Chain C, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y13|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y17|C Chain C, Ef-Tu Complex 3
pdb|2Y19|C Chain C, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 229
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYI 200
D NK+Y+ D A L+KE ATAKFDE++++ L ++ +RSDQ VRG++ LP GK++ +
Sbjct: 16 DPNKVYTIDEAARLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRV 75
Query: 201 AAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSS-LGKILGPK 259
A EK ++A+ AGAD VG E++ QKI + D V+A+P+ M V S LG+ILGP+
Sbjct: 76 LAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPR 135
Query: 260 GLMPNIKDGTLNSDILTAIKNAKSGQI 286
GL+PN K GT+ +I I+ K+G+I
Sbjct: 136 GLLPNPKAGTVGFNIGEIIREIKAGRI 162
>pdb|3ZVP|C Chain C, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|4ABS|C Chain C, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 229
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYI 200
D NKIY+ D A L+KE ATAKFDE++++ L ++ +RSDQ VRG++ LP GK++ +
Sbjct: 16 DPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRV 75
Query: 201 AAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSS-LGKILGPK 259
A EK ++A+ AGAD VG E++ QKI + D V+A+P+ M V S +G+ILGP+
Sbjct: 76 LAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKMGRILGPR 135
Query: 260 GLMPNIKDGTLNSDILTAIKNAKSGQI 286
GL+PN K GT+ +I I+ K+G+I
Sbjct: 136 GLLPNPKAGTVGFNIGEIIREIKAGRI 162
>pdb|3EGV|B Chain B, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
Length = 146
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 98/137 (71%), Gaps = 3/137 (2%)
Query: 3 KKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPI-PVIITV 61
KK+ +KLQ+PAG A P+PP+GPALGQ G NIMEF K FNA T +G I PV IT+
Sbjct: 1 KKVVAVVKLQLPAGAATPAPPVGPALGQHGANIMEFVKAFNAATA--NMGDAIVPVEITI 58
Query: 62 FSDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAAS 121
++D+SFTF K P ++LI+KAAG++KG+ KP +KVG++T+ Q+ EIA K DL
Sbjct: 59 YADRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTD 118
Query: 122 ISAAMRTIAGSARSMGI 138
+ AA R IAGSARSMG+
Sbjct: 119 LEAAARMIAGSARSMGV 135
>pdb|3QOY|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Aquifex
Aeolicus
Length = 242
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 102/152 (67%), Gaps = 4/152 (2%)
Query: 139 IFDKNKIYSFDSAITLIK---EAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTG 195
+ D+NK Y+ + A+ L+K E +FDE++++++ LNV+ + +DQ+VRGS+VLP G
Sbjct: 14 LVDRNKRYTLEEAVDLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHGLG 73
Query: 196 KKIYIAAFVPKEKYEQAKIAGADIVGMEDLAQKI-KSNEVSCDLVIASPESMHIVSSLGK 254
K I + F E ++A+ AGAD VG ++L KI K D+ IA+PE M V+ LG+
Sbjct: 74 KPIKVVVFAEGEYAKKAEEAGADYVGGDELINKILKEEWTDFDVAIATPEMMPKVAKLGR 133
Query: 255 ILGPKGLMPNIKDGTLNSDILTAIKNAKSGQI 286
ILGP+GLMP+ K GT+ +++ AIK+AK G++
Sbjct: 134 ILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRV 165
>pdb|1ZHO|A Chain A, The Structure Of A Ribosomal Protein L1 In Complex With
Mrna
pdb|1ZHO|C Chain C, The Structure Of A Ribosomal Protein L1 In Complex With
Mrna
pdb|1ZHO|E Chain E, The Structure Of A Ribosomal Protein L1 In Complex With
Mrna
pdb|1ZHO|G Chain G, The Structure Of A Ribosomal Protein L1 In Complex With
Mrna
Length = 228
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYI 200
D NKIY+ D A L+KE ATAKFDE++++ L ++ +RSDQ VRG++ LP GK++ +
Sbjct: 15 DPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRV 74
Query: 201 AAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSS-LGKILGPK 259
A EK ++A+ AGAD VG E++ QKI D V+A+P+ V S LG+ILGP+
Sbjct: 75 LAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWXDFDAVVATPDVXGAVGSKLGRILGPR 134
Query: 260 GLMPNIKDGTLNSDILTAIKNAKSGQI 286
GL+PN K GT+ +I I+ K+G+I
Sbjct: 135 GLLPNPKAGTVGFNIGEIIREIKAGRI 161
>pdb|2V49|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2
Length = 229
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYI 200
D NK+Y+ D A L+KE ATAKFDE++++ L ++ +RSDQ VRG++ LP GK++ +
Sbjct: 16 DPNKVYTIDEAARLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRV 75
Query: 201 AAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSS-LGKILGPK 259
A EK ++A+ AGAD VG E++ QKI + D V+A+P+ M V S LG+IL P+
Sbjct: 76 LAIAKGEKIKEAEEAGADYVGGEEIIQKILDAWMDFDAVVATPDVMGAVGSKLGRILAPR 135
Query: 260 GLMPNIKDGTLNSDILTAIKNAKSGQI 286
GL+PN K GT+ +I I+ K+G+I
Sbjct: 136 GLLPNPKAGTVGFNIGEIIREIKAGRI 162
>pdb|3TG8|A Chain A, Mutant Ribosomal Protein L1 Lacking Ala158 From Thermus
Thermophilus
Length = 228
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 1/144 (0%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYI 200
D NKIY+ D A L+KE ATAKFDE++++ L ++ +RSDQ VRG++ LP GK++ +
Sbjct: 16 DPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRV 75
Query: 201 AAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSS-LGKILGPK 259
A EK ++A+ AGAD VG E++ QKI + D V+A+P+ M V S LG+ILGP+
Sbjct: 76 LAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPR 135
Query: 260 GLMPNIKDGTLNSDILTAIKNAKS 283
GL+PN K GT+ +I I+ K
Sbjct: 136 GLLPNPKAGTVGFNIGEIIREIKG 159
>pdb|2HW8|A Chain A, Structure Of Ribosomal Protein L1-Mrna Complex At 2.1
Resolution
Length = 228
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYI 200
D NKIY+ D A L+KE ATAKFDE++++ L ++ +RSDQ VRG++ LP GK++ +
Sbjct: 15 DPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRV 74
Query: 201 AAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSS-LGKILGPK 259
A EK ++A+ AGAD VG E++ QKI + D V+A+P+ V S G+ILGP+
Sbjct: 75 LAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVXGAVGSKXGRILGPR 134
Query: 260 GLMPNIKDGTLNSDILTAIKNAKSGQI 286
GL+PN K GT+ +I I+ K+G+I
Sbjct: 135 GLLPNPKAGTVGFNIGEIIREIKAGRI 161
>pdb|3BBO|D Chain D, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 352
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 92/141 (65%)
Query: 146 YSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVP 205
Y +A++L+K+ ++ KF E+ + LN++ K +DQ +R ++ LP TGK + IA
Sbjct: 135 YDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQ 194
Query: 206 KEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPKGLMPNI 265
+K ++AK AGADIVG E+L ++IK + D +IA+ + M V+SLG+ILGP+GLMP
Sbjct: 195 GDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTP 254
Query: 266 KDGTLNSDILTAIKNAKSGQI 286
K GT+ ++ A++ K G++
Sbjct: 255 KAGTVTPNVAQAVEEFKKGKV 275
>pdb|2FTC|G Chain G, Structural Model For The Large Subunit Of The Mammalian
Mitochondrial Ribosome
pdb|3IY9|G Chain G, Leishmania Tarentolae Mitochondrial Large Ribosomal
Subunit Model
Length = 145
Score = 107 bits (267), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 86/139 (61%), Gaps = 4/139 (2%)
Query: 4 KITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFS 63
++ G I+ + AG A P PP+GP LGQRG++I +FCK FN +T+ I+ G P+P I V
Sbjct: 3 EVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKP 62
Query: 64 DKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVD----LTA 119
D++F K V++ +K AAGI+KG+ + + G +T + EIA IK D L
Sbjct: 63 DRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQD 122
Query: 120 ASISAAMRTIAGSARSMGI 138
+S+ +R+I GSARS+GI
Sbjct: 123 VPLSSVVRSIIGSARSLGI 141
>pdb|1S72|I Chain I, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1YHQ|I Chain I, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|I Chain I, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|I Chain I, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|I Chain I, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|I Chain I, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|I Chain I, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|I Chain I, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|I Chain I, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|I Chain I, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|I Chain I, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|I Chain I, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|I Chain I, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|I Chain I, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|I Chain I, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|I Chain I, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|I Chain I, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|I Chain I, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|I Chain I, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|I Chain I, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTL|I Chain I, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|I Chain I, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CC2|I Chain I, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|I Chain I, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|I Chain I, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CMA|I Chain I, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|I Chain I, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|I Chain I, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3I55|I Chain I, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|I Chain I, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
Length = 162
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 1/148 (0%)
Query: 5 ITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSD 64
+ G I++ +P G+ANP PP+GP LG +++ + N QT + GT +PV + D
Sbjct: 1 MAGTIEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFD-GTEVPVTVKYDDD 59
Query: 65 KSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISA 124
SF + V P LIK AG + GS +P D V L+ Q+K+IA K+ DL + ++
Sbjct: 60 GSFEIEVGVPPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTN 119
Query: 125 AMRTIAGSARSMGIIFDKNKIYSFDSAI 152
A + + G+ S+G+ + F I
Sbjct: 120 AAKEVVGTCTSLGVTIEGENPREFKERI 147
>pdb|2OTJ|I Chain I, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
Length = 161
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Query: 7 GFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKS 66
G I++ +P G+ANP PP+GP LG +++ + N QT + GT +PV + D S
Sbjct: 2 GTIEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFD-GTEVPVTVKYDDDGS 60
Query: 67 FTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAM 126
F + V P LIK AG + GS +P D V L+ Q+K+IA K+ DL + ++ A
Sbjct: 61 FEIEVGVPPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAA 120
Query: 127 RTIAGSARSMGIIFDKNKIYSFDSAI 152
+ + G+ S+G+ + F I
Sbjct: 121 KEVVGTCTSLGVTIEGENPREFKERI 146
>pdb|3FIN|C Chain C, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit
Length = 191
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 86/143 (60%), Gaps = 15/143 (10%)
Query: 144 KIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAF 203
K+Y+ D A A TAKFDE++++ L ++ +RSDQ VRG++ LP GK++ + A
Sbjct: 1 KVYTIDEA------ARTAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAI 54
Query: 204 VPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPKGLMP 263
EK ++A+ AGAD VG E++ QKI D V+ + + S LG+ILGP+GL P
Sbjct: 55 AKGEKIKEAEEAGADYVGGEEIIQKILDG--WMDFVMGA-----VGSKLGRILGPRGLNP 107
Query: 264 NIKDGTLNSDILTAIKNAKSGQI 286
K GT+ +I I+ K+G+I
Sbjct: 108 --KAGTVGFNIGEIIREIKAGRI 128
>pdb|2BCW|A Chain A, Coordinates Of The N-Terminal Domain Of Ribosomal
Protein L11,C-Terminal Domain Of Ribosomal Protein
L7L12 AND A Portion Of The G' Domain Of Elongation
Factor G, As Fitted Into Cryo-Em Map Of An Escherichia
Coli 70sEf- GGdpFusidic Acid Complex
Length = 65
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
Query: 9 IKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFT 68
IKLQ+PAGKA P+PP+GPALGQ G+NIMEFCK FNA+T + G +PV+ITV+ DKSFT
Sbjct: 2 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVYEDKSFT 60
Query: 69 F 69
F
Sbjct: 61 F 61
>pdb|3CJS|B Chain B, Minimal Recognition Complex Between Prma And Ribosomal
Protein L11
pdb|3CJS|C Chain C, Minimal Recognition Complex Between Prma And Ribosomal
Protein L11
Length = 72
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 2 VKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITV 61
+KK+ +KLQ+PAGKA P+PP+GPALGQ G NIMEF K FNA T + +PV IT+
Sbjct: 1 MKKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAI-VPVEITI 59
Query: 62 FSDKSFTFKKK 72
++D+SFTF K
Sbjct: 60 YADRSFTFVTK 70
>pdb|3J21|H Chain H, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 164
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
Query: 9 IKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFS-DKSF 67
+++ + GKA P PP+GPA+G GLN+ + N T+ G +PV I V K F
Sbjct: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKDF-AGMQVPVKIIVDPVTKQF 64
Query: 68 TFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMR 127
+ V P + LIKK G++KGS +P + VG LT Q+ +IA +K + A ++ AA +
Sbjct: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKKDQMLALTLKAAAK 124
Query: 128 TIAGSARSMGIIFD 141
+ G+A SMG+ +
Sbjct: 125 EVIGTALSMGVTVE 138
>pdb|1HC8|A Chain A, Crystal Structure Of A Conserved Ribosomal Protein-Rna
Complex
pdb|1HC8|B Chain B, Crystal Structure Of A Conserved Ribosomal Protein-Rna
Complex
Length = 76
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%)
Query: 67 FTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAM 126
FTF K P L+KKAAGI+ GS +P+ +KV + +++EIA +K DL AASI AAM
Sbjct: 1 FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAM 60
Query: 127 RTIAGSARSMGIIFD 141
R I G+ARSMGI+ +
Sbjct: 61 RMIEGTARSMGIVVE 75
>pdb|1Y39|A Chain A, Co-Evolution Of Protein And Rna Structures Within A Highly
Conserved Ribosomal Domain
pdb|1Y39|B Chain B, Co-Evolution Of Protein And Rna Structures Within A Highly
Conserved Ribosomal Domain
Length = 76
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 52/75 (69%)
Query: 67 FTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAM 126
FTF K P L+KKAAGI+ GS +P+ +KV + +++EIA +K DL AASI AAM
Sbjct: 1 FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAM 60
Query: 127 RTIAGSARSMGIIFD 141
R I G+AR+MGI+ +
Sbjct: 61 RMIEGTARNMGIVVE 75
>pdb|1ACI|A Chain A, L11 Ribosomal Protein Rna Binding Domain, Nmr, 20
Structures
pdb|1FOW|A Chain A, Nmr Structure Of L11-C76, The C-Terminal Domain Of 50s
Ribosomal Protein L11, Minimized Average Structure
pdb|1FOX|A Chain A, Nmr Structure Of L11-C76, The C-Terminal Domain Of 50s
Ribosomal Protein L11, 33 Structures
pdb|1FOY|A Chain A, The Rna Binding Domain Of Ribosomal Protein L11: Three-
Dimensional Structure Of The Rna-Bound Form Of The
Protein, Nmr, Minimized Average Structure
pdb|2FOW|A Chain A, The Rna Binding Domain Of Ribosomal Protein L11: Three-
Dimensional Structure Of The Rna-Bound Form Of The
Protein, Nmr, 26 Structures
Length = 76
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 51/75 (68%)
Query: 67 FTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAM 126
TF K P L+KKAAGI+ GS +P+ +KV + +++EIA +K DL AASI AAM
Sbjct: 1 MTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAM 60
Query: 127 RTIAGSARSMGIIFD 141
R I G+ARSMGI+ +
Sbjct: 61 RMIEGTARSMGIVVE 75
>pdb|1QA6|A Chain A, Crystal Structure Of A Conserved Ribosomal Protein-Rna
Complex
pdb|1QA6|B Chain B, Crystal Structure Of A Conserved Ribosomal Protein-Rna
Complex
pdb|1C04|C Chain C, Identification Of Known Protein And Rna Structures In A 5
A Map Of The Large Ribosomal Subunit From Haloarcula
Marismortui
Length = 67
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 47/67 (70%)
Query: 72 KVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAG 131
K P L+KKAAGI+ GS +P+ +KV + +++EIA +K DL AASI AAMR I G
Sbjct: 1 KTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEG 60
Query: 132 SARSMGI 138
+ARSMGI
Sbjct: 61 TARSMGI 67
>pdb|2OV7|A Chain A, The First Domain Of The Ribosomal Protein L1 From Thermus
Thermophilus
pdb|2OV7|B Chain B, The First Domain Of The Ribosomal Protein L1 From Thermus
Thermophilus
pdb|2OV7|C Chain C, The First Domain Of The Ribosomal Protein L1 From Thermus
Thermophilus
pdb|2OUM|A Chain A, The First Domain Of L1 From Thermus Thermophilus
pdb|2VPL|A Chain A, The Structure Of The Complex Between The First Domain Of
L1 Protein From Thermus Thermophilus And Mrna From
Methanococcus Jannaschii
pdb|2VPL|C Chain C, The Structure Of The Complex Between The First Domain Of
L1 Protein From Thermus Thermophilus And Mrna From
Methanococcus Jannaschii
Length = 137
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLP------FST 194
D NKIY+ D A L+KE ATAKFDE++++ L ++ +RSDQ VRG++ LP F
Sbjct: 15 DPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGGRIEFRN 74
Query: 195 GKKIYIAAFVPKEKYEQAKIA 215
K I A V K + K+A
Sbjct: 75 DKTGAIHAPVGKASFPPEKLA 95
>pdb|3G4S|I Chain I, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|I Chain I, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|I Chain I, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
Length = 70
Score = 47.8 bits (112), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 73 VTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGS 132
V P LIK AG + GS +P D V L+ Q+K+IA K+ DL + ++ A + + G+
Sbjct: 2 VPPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGT 61
Query: 133 ARSMGIIFD 141
S+G+ +
Sbjct: 62 CTSLGVTIE 70
>pdb|3J21|A Chain A, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 216
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 18/143 (12%)
Query: 140 FDKNKIYSFDSAITLIKEA-ATAK---FDESIDISIHL-NVNIKRSDQIVRGSIVLPFST 194
FD+ KI + +KEA A AK F +S++++++L ++++KR + + +VLP
Sbjct: 3 FDRQKI------VKAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGR 56
Query: 195 GKKIYIAAFVPKEKYEQAKIAGADIVG---MEDLA---QKIKSNEVSCDLVIA-SPESMH 247
GK + IA E A+ G D++ +E++A ++ + D IA +P
Sbjct: 57 GKDVKIAVIADGAVAEAARKLGLDVISSAELEEIASSPRQARKLAKKYDFFIAEAPLMPK 116
Query: 248 IVSSLGKILGPKGLMPNIKDGTL 270
I LG+ LGP+ MP + TL
Sbjct: 117 IGRYLGRYLGPRNKMPVVVPPTL 139
>pdb|1DWU|A Chain A, Ribosomal Protein L1
pdb|1DWU|B Chain B, Ribosomal Protein L1
Length = 213
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 158 AATAKFDESIDISIHL-NVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAG 216
A F +S+D+ I+L +++ R + ++ +VLP GK+ IA + QA+ G
Sbjct: 17 AKPRNFTQSLDLIINLKELDLSRPENRLKEQVVLPNGRGKEPKIAVIAKGDLAAQAEEMG 76
Query: 217 ADIVGMEDLAQKIKSNEVS------CDLVIASPESMHIV-SSLGKILGPKGLMP 263
++ ++L + K+ +++ D IA + M +V +LG +LGP+G MP
Sbjct: 77 LTVIRQDELEELGKNKKMAKKIANEHDFFIAQADMMPLVGKTLGPVLGPRGKMP 130
>pdb|2ZKR|5 Chain 5, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 212
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 155 IKEAATAKFDESIDISIHL-NVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAK 213
+++A F E++D++++L ++++ V S+VLP TG++ I F E +A+
Sbjct: 14 LEDAPERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVFAEGETALRAE 73
Query: 214 IAGADIVGMEDLAQ------KIKSNEVSCDLVIASPESMHIVSS-LGKILGPKGLMPNIK 266
D++ ++L + K D IA M + LG +LGP+G MP
Sbjct: 74 EVADDVLDEDELEELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPL 133
Query: 267 DGTLNSDILTAIKNAKSG-QIRS 288
D + D++ I+ K+ Q+RS
Sbjct: 134 DP--DDDVVEVIERMKNTVQLRS 154
>pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein L1 From
Methanococcus Jannaschii
pdb|1I2A|A Chain A, Crystal Structure Of L1 Ribosomal Protein From
Methanococcus Jannaschii With 1.85a Resolution
Length = 219
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 150 SAITLIKEAATAK-FDESID-ISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKE 207
A+ +E A + F +S + I+ +++++ + ++ +VLP GK+ IA +
Sbjct: 8 QAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGD 67
Query: 208 KYEQAKIAGADIVGMEDLAQ------KIKSNEVSCDLVIASPESMHIVSS-LGKILGPKG 260
+QA+ G ++ E++ + K++ + D IA + M ++ +G ILGP+G
Sbjct: 68 LAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRG 127
Query: 261 LMP 263
MP
Sbjct: 128 KMP 130
>pdb|1U63|A Chain A, The Structure Of A Ribosomal Protein L1-Mrna Complex
pdb|1U63|C Chain C, The Structure Of A Ribosomal Protein L1-Mrna Complex
Length = 219
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 150 SAITLIKEAATAK-FDESID-ISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKE 207
A+ +E A + F +S + I+ ++ ++ + ++ +VLP GK+ IA +
Sbjct: 8 QAVKEARELAKPRNFTQSFEFIATLKEIDXRKPENRIKTEVVLPHGRGKEAKIAVIGTGD 67
Query: 208 KYEQAKIAGADIVGMEDLAQ------KIKSNEVSCDLVIASPESMHIVSSL-GKILGPKG 260
+QA+ G ++ E++ + K++ + D IA + ++ G ILGP+G
Sbjct: 68 LAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLXPLIGRYXGVILGPRG 127
Query: 261 LMP 263
P
Sbjct: 128 KXP 130
>pdb|3FEF|A Chain A, Crystal Structure Of Putative Glucosidase Lpld From
Bacillus Subtilis
pdb|3FEF|B Chain B, Crystal Structure Of Putative Glucosidase Lpld From
Bacillus Subtilis
pdb|3FEF|C Chain C, Crystal Structure Of Putative Glucosidase Lpld From
Bacillus Subtilis
pdb|3FEF|D Chain D, Crystal Structure Of Putative Glucosidase Lpld From
Bacillus Subtilis
Length = 450
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 214 IAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPKGLMPNIKDGTLNSD 273
++ ADIV + L + EV L PE I S+G +GP G++ ++ + ++
Sbjct: 73 LSAADIVIISILPGSLDDXEVDVHL----PERCGIYQSVGDTVGPGGIIRGLRAVPIFAE 128
Query: 274 ILTAIKN 280
I AI++
Sbjct: 129 IARAIRD 135
>pdb|1AEP|A Chain A, Molecular Structure Of An Apolipoprotein Determined At
2.5- Angstroms Resolution
Length = 161
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 51 LGTPIP-VIITVFSDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEI 109
LG P P + + ++++ FK K+ VT +K+ A +GS + + I +
Sbjct: 29 LGLPTPDEALNLLTEQANAFKTKIAEVTTSLKQEAEKHQGSVAEQLNAFARNLNNSIHDA 88
Query: 110 ATIKNVDLTAASISAAMRTI 129
AT N+ S+ +A+ +
Sbjct: 89 ATSLNLQDQLNSLQSALTNV 108
>pdb|1LS4|A Chain A, Nmr Structure Of Apolipophorin-Iii From Locusta Migratoria
Length = 180
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 51 LGTPIP-VIITVFSDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEI 109
LG P P + + ++++ FK K+ VT +K+ A +GS + + I +
Sbjct: 48 LGLPTPDEALNLLTEQANAFKTKIAEVTTSLKQEAEKHQGSVAEQLNAFARNLNNSIHDA 107
Query: 110 ATIKNVDLTAASISAAMRTI 129
AT N+ S+ +A+ +
Sbjct: 108 ATSLNLQDQLNSLQSALTNV 127
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 211 QAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKI 255
++++ + G D+ Q+I+ E C L++A+P + + GKI
Sbjct: 127 RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKI 171
>pdb|3ZF7|J Chain J, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 214
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 153 TLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAFV 204
++K+ KF ESID+ ++L + D+ GS+ LP ++ +
Sbjct: 15 NVLKDRKERKFKESIDLQVNLKNYDPQKDKRFSGSVRLPHVCRPRMTVCLLC 66
>pdb|3LML|A Chain A, Crystal Structure Of The Sheath Tail Protein Lin1278 From
Listeria Innocua, Northeast Structural Genomics
Consortium Target Lkr115
pdb|3LML|B Chain B, Crystal Structure Of The Sheath Tail Protein Lin1278 From
Listeria Innocua, Northeast Structural Genomics
Consortium Target Lkr115
pdb|3LML|C Chain C, Crystal Structure Of The Sheath Tail Protein Lin1278 From
Listeria Innocua, Northeast Structural Genomics
Consortium Target Lkr115
pdb|3LML|D Chain D, Crystal Structure Of The Sheath Tail Protein Lin1278 From
Listeria Innocua, Northeast Structural Genomics
Consortium Target Lkr115
pdb|3LML|E Chain E, Crystal Structure Of The Sheath Tail Protein Lin1278 From
Listeria Innocua, Northeast Structural Genomics
Consortium Target Lkr115
pdb|3LML|F Chain F, Crystal Structure Of The Sheath Tail Protein Lin1278 From
Listeria Innocua, Northeast Structural Genomics
Consortium Target Lkr115
Length = 460
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 154 LIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKE 207
L A FD + DI++ LN N+ D + + P +G+K Y V E
Sbjct: 404 LQDSGAITNFDSTADITVSLNNNV---DGFIVNQSIEPVDSGEKFYFTTEVKLE 454
>pdb|3IZR|A Chain A, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 216
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 149 DSAITLIKEAAT--AKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPK 206
D+ ++ EA KF E++++ I L + D+ GS+ LP K+ +
Sbjct: 11 DAITQIVGEAREKKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMRVCMLGDA 70
Query: 207 EKYEQAKIAGADIVGME 223
+ +QA+ G D + +E
Sbjct: 71 QHVDQAEKMGLDYMDVE 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,594,152
Number of Sequences: 62578
Number of extensions: 293679
Number of successful extensions: 753
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 73
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)