Query psy15220
Match_columns 289
No_of_seqs 255 out of 1512
Neff 6.1
Searched_HMMs 46136
Date Sat Aug 17 00:18:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0080 RplK Ribosomal protein 100.0 5.1E-59 1.1E-63 386.7 15.5 141 2-143 1-141 (141)
2 TIGR01632 L11_bact 50S ribosom 100.0 2.3E-57 5E-62 381.4 15.8 140 3-142 1-140 (140)
3 CHL00127 rpl11 ribosomal prote 100.0 3.7E-57 8E-62 380.2 15.3 140 1-141 1-140 (140)
4 PRK00140 rplK 50S ribosomal pr 100.0 6.2E-57 1.3E-61 379.6 15.8 141 1-142 1-141 (141)
5 PRK01143 rpl11p 50S ribosomal 100.0 9.2E-57 2E-61 386.2 15.1 152 7-165 3-155 (163)
6 PLN03072 60S ribosomal protein 100.0 8.9E-55 1.9E-59 374.2 16.7 150 6-164 10-162 (166)
7 smart00649 RL11 Ribosomal prot 100.0 1.4E-54 3.1E-59 361.9 14.6 132 9-141 1-132 (132)
8 cd00349 Ribosomal_L11 Ribosoma 100.0 4.5E-54 9.7E-59 358.5 14.5 131 9-140 1-131 (131)
9 PRK14539 50S ribosomal protein 100.0 3.4E-53 7.3E-58 370.6 16.3 139 1-144 2-140 (196)
10 PTZ00321 ribosomal protein L11 100.0 9.3E-53 2E-57 386.2 16.0 143 3-145 47-196 (342)
11 KOG3257|consensus 100.0 8.5E-51 1.8E-55 341.3 12.1 137 6-142 19-157 (168)
12 PTZ00105 60S ribosomal protein 100.0 1.3E-48 2.8E-53 328.5 14.2 134 22-164 1-136 (140)
13 COG0081 RplA Ribosomal protein 100.0 4.7E-47 1E-51 339.0 13.8 149 140-288 15-164 (228)
14 CHL00129 rpl1 ribosomal protei 100.0 1.2E-46 2.5E-51 340.6 15.7 149 140-289 15-163 (229)
15 TIGR01169 rplA_bact ribosomal 100.0 4.8E-45 1E-49 330.0 15.9 149 140-288 13-161 (227)
16 PRK05424 rplA 50S ribosomal pr 100.0 7.2E-45 1.6E-49 329.4 15.7 148 141-288 15-162 (230)
17 TIGR01170 rplA_mito ribosomal 100.0 1.3E-44 2.9E-49 305.0 14.8 137 146-284 1-141 (141)
18 PRK04203 rpl1P 50S ribosomal p 100.0 3.9E-35 8.5E-40 263.5 14.3 139 147-288 6-154 (215)
19 PTZ00225 60S ribosomal protein 100.0 2.8E-33 6.2E-38 251.1 12.9 140 145-288 6-154 (214)
20 PTZ00029 60S ribosomal protein 100.0 1.3E-30 2.9E-35 234.3 13.2 138 147-288 8-156 (216)
21 KOG0886|consensus 100.0 3.2E-30 7E-35 213.7 10.9 147 6-161 12-160 (167)
22 KOG1569|consensus 100.0 1.1E-28 2.5E-33 226.7 12.7 143 143-287 87-242 (323)
23 cd00403 Ribosomal_L1 Ribosomal 100.0 1.3E-27 2.8E-32 212.6 14.2 136 148-283 1-144 (208)
24 PF00298 Ribosomal_L11: Riboso 99.9 1.5E-27 3.3E-32 178.2 6.2 69 72-140 1-69 (69)
25 PF03946 Ribosomal_L11_N: Ribo 99.9 8.3E-27 1.8E-31 169.6 7.0 60 8-67 1-60 (60)
26 PF00687 Ribosomal_L1: Ribosom 99.8 4.4E-20 9.6E-25 165.3 11.1 134 151-286 4-161 (220)
27 KOG1570|consensus 99.6 6.7E-16 1.5E-20 136.2 3.7 125 157-284 23-155 (218)
28 PF13003 MRL1: Ribosomal prote 96.6 0.0031 6.7E-08 52.7 4.4 66 138-203 62-133 (133)
29 PTZ00029 60S ribosomal protein 91.2 0.11 2.4E-06 47.1 1.7 22 250-272 117-138 (216)
30 PTZ00225 60S ribosomal protein 84.7 0.64 1.4E-05 42.1 2.3 25 250-275 115-139 (214)
31 KOG1685|consensus 73.1 8.5 0.00018 37.3 5.9 86 196-283 87-195 (343)
32 PRK01395 V-type ATP synthase s 68.9 21 0.00045 28.6 6.5 83 198-282 4-99 (104)
33 TIGR00853 pts-lac PTS system, 61.7 23 0.0005 27.7 5.4 61 196-260 2-75 (95)
34 PRK02228 V-type ATP synthase s 50.4 39 0.00084 26.7 5.0 85 198-283 1-95 (100)
35 COG1064 AdhP Zn-dependent alco 49.7 26 0.00055 34.1 4.6 86 198-287 191-305 (339)
36 COG1436 NtpG Archaeal/vacuolar 49.3 44 0.00096 26.9 5.2 83 198-281 3-97 (104)
37 cd05565 PTS_IIB_lactose PTS_II 47.9 39 0.00086 26.8 4.7 58 199-260 2-72 (99)
38 PRK09590 celB cellobiose phosp 42.4 1.2E+02 0.0027 24.1 6.8 83 199-283 3-102 (104)
39 KOG1196|consensus 38.1 8.2 0.00018 37.1 -0.8 70 103-172 142-229 (343)
40 PF03990 DUF348: Domain of unk 37.7 96 0.0021 20.5 4.7 35 56-92 1-35 (43)
41 PRK01189 V-type ATP synthase s 36.5 84 0.0018 25.2 5.0 83 199-282 4-97 (104)
42 COG0051 RpsJ Ribosomal protein 36.3 13 0.00029 30.0 0.3 34 110-143 6-39 (104)
43 KOG0455|consensus 33.3 34 0.00075 32.3 2.5 43 98-143 192-241 (364)
44 PF01990 ATP-synt_F: ATP synth 33.3 51 0.0011 25.4 3.2 81 200-280 1-95 (95)
45 cd05564 PTS_IIB_chitobiose_lic 32.6 91 0.002 24.2 4.5 77 199-281 1-94 (96)
46 PRK13958 N-(5'-phosphoribosyl) 32.5 25 0.00055 31.4 1.5 25 198-222 3-27 (207)
47 cd02395 SF1_like-KH Splicing f 32.3 60 0.0013 26.7 3.6 35 11-45 4-38 (120)
48 PF01188 MR_MLE: Mandelate rac 31.3 76 0.0017 22.7 3.7 34 125-160 4-37 (67)
49 COG0135 TrpF Phosphoribosylant 30.9 27 0.00058 31.6 1.4 25 197-221 3-27 (208)
50 PRK05424 rplA 50S ribosomal pr 30.8 40 0.00087 30.8 2.5 30 23-52 125-158 (230)
51 PRK03957 V-type ATP synthase s 30.2 1.3E+02 0.0028 23.8 5.0 86 198-285 1-97 (100)
52 KOG1198|consensus 29.4 89 0.0019 30.2 4.8 44 197-240 183-230 (347)
53 cd00405 PRAI Phosphoribosylant 28.8 98 0.0021 27.0 4.6 23 199-221 2-24 (203)
54 COG4953 PbpC Membrane carboxyp 27.9 63 0.0014 34.3 3.6 75 10-90 418-492 (733)
55 KOG1197|consensus 27.2 1.1E+02 0.0025 29.1 4.8 81 151-240 134-220 (336)
56 PRK00536 speE spermidine synth 26.0 1.5E+02 0.0032 27.7 5.4 74 196-270 72-174 (262)
57 PRK01222 N-(5'-phosphoribosyl) 25.6 36 0.00079 30.4 1.3 26 197-222 4-29 (210)
58 PF00697 PRAI: N-(5'phosphorib 24.6 48 0.001 29.1 1.8 25 198-222 1-25 (197)
59 PLN02363 phosphoribosylanthran 24.4 41 0.0009 31.2 1.4 27 196-222 47-73 (256)
60 CHL00129 rpl1 ribosomal protei 23.9 49 0.0011 30.3 1.8 30 23-52 125-158 (229)
61 cd03400 Band_7_1 A subgroup of 23.5 3.4E+02 0.0073 21.4 6.5 81 45-142 17-104 (124)
62 PF00107 ADH_zinc_N: Zinc-bind 22.8 85 0.0018 24.5 2.8 63 198-260 15-83 (130)
No 1
>COG0080 RplK Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-59 Score=386.71 Aligned_cols=141 Identities=59% Similarity=0.955 Sum_probs=137.6
Q ss_pred ccceeEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHHH
Q psy15220 2 VKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIK 81 (289)
Q Consensus 2 ~k~~~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ 81 (289)
+|++.++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++|++|+ |++|||+||||+||||+|++++||+|+||+
T Consensus 1 a~k~~~~ikl~v~aGkA~p~PpvGPALG~~Gvni~~f~k~fN~~T~~~~-G~~vPV~Itv~~drsftf~~ktPPas~Llk 79 (141)
T COG0080 1 AKKVVKIIKLQVPAGKANPSPPVGPALGQLGVNIMEFCKEFNAATKDEK-GLPVPVVITVYEDRSFTFIVKTPPASALLK 79 (141)
T ss_pred CCccceEEEEEecccccCCCCCCCccccccCCCHHHHHHHHHHHhhccC-CCeeeEEEEEEcCCcEEEEECCCCHHHHHH
Confidence 4668999999999999999999999999999999999999999999966 999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceecccc
Q psy15220 82 KAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDKN 143 (289)
Q Consensus 82 ka~g~~~g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~k 143 (289)
|++|+++||++|+++++|+||++||+|||++|++||++.+|++|+|+|+||||||||+|+++
T Consensus 80 Ka~g~~~Gs~~p~k~~vG~lt~~qv~eIA~~K~~dl~a~~l~aA~k~I~GTa~SMGv~Veg~ 141 (141)
T COG0080 80 KAAGIEKGSGKPNKNKVGKLTLAQVREIAKTKMPDLNAKDLEAAVKEILGTARSMGVTVEGK 141 (141)
T ss_pred HHhCCCCCCCCCCcceeeeeeHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhceEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999974
No 2
>TIGR01632 L11_bact 50S ribosomal protein L11. This model represents bacterial, chloroplast, and most mitochondrial forms of 50S ribosomal protein L11.
Probab=100.00 E-value=2.3e-57 Score=381.45 Aligned_cols=140 Identities=62% Similarity=1.007 Sum_probs=136.3
Q ss_pred cceeEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHHHH
Q psy15220 3 KKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIKK 82 (289)
Q Consensus 3 k~~~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~k 82 (289)
|++.++|+|+++||+|+|+|||||+|||+|||+|+||++||++|++|.+|++|||+|+||+||+|+|++++||+||||+|
T Consensus 1 k~~~~~ikl~v~aG~A~p~PplGP~LG~~Gini~~f~k~fN~~T~~~~~G~~vpV~Itv~~drsf~~~v~~Pp~s~ll~k 80 (140)
T TIGR01632 1 KKIVGIIKLQVPAGQANPAPPVGPALGQRGVNIMEFCKQFNARTADYEPGLPVPVVITVYEDKSFTFIVKTPPVSYLLKK 80 (140)
T ss_pred CceEEEEEEEEeccccCCCCCCcccccccCCCHHHHHHHHHHHHhhhcCCCeEEEEEEEeCCCeEEEEEcCCCHHHHHHH
Confidence 46788999999999999999999999999999999999999999996559999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceeccc
Q psy15220 83 AAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDK 142 (289)
Q Consensus 83 a~g~~~g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~ 142 (289)
|+|+++||++|+++++|+||++||||||+.|++|+++.+|+++||+|+||||||||+|++
T Consensus 81 aag~~~gs~~p~~~~~G~it~~qv~eIA~~K~~d~~~~~l~~~vk~v~GTarSmGi~V~~ 140 (140)
T TIGR01632 81 AAGVEKGSKNPKKEKVGKITRKQVREIAEIKMSDLNTKDIEAAMKIIAGTAKSMGIEIVG 140 (140)
T ss_pred HhCCCCCCCCCCCeEEeEecHHHHHHHHHHHHHHhCcccHHHHHHHhheeHeeceEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999975
No 3
>CHL00127 rpl11 ribosomal protein L11; Validated
Probab=100.00 E-value=3.7e-57 Score=380.19 Aligned_cols=140 Identities=52% Similarity=0.836 Sum_probs=137.8
Q ss_pred CccceeEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHH
Q psy15220 1 MVKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLI 80 (289)
Q Consensus 1 m~k~~~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll 80 (289)
|+|++.++|+|+++||+|+|+|||||+|||+|||+|+||++||++|++|+ |++|||+|+||+||+|+|++++||+||||
T Consensus 1 m~k~~~~~ikl~v~aG~A~p~PplGP~LG~~Gini~~f~k~fN~~T~~~~-g~~vpV~Itv~~drsf~~~v~~Pp~s~ll 79 (140)
T CHL00127 1 MAKKKLAIIKLALPAGKATPAPPVGPALGQHGVNINLFCKEYNARTKDKI-GLIIPVEISVYEDKSYTFILKTPPASVLL 79 (140)
T ss_pred CccccccEEEEEEecCccCCCCCCcccccccCCCHHHHHHHHHHHhhhcC-CCeEEEEEEEeCCceEEEEEcCCCHHHHH
Confidence 89999999999999999999999999999999999999999999999996 99999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceecc
Q psy15220 81 KKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFD 141 (289)
Q Consensus 81 ~ka~g~~~g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~ 141 (289)
+||+|+++||++|+++++|+||++||||||+.|++|+++.+|+++||+|+||||||||+|.
T Consensus 80 ~ka~gi~~gs~~p~~~~~G~it~~~v~eIA~~K~~d~~~~~l~~~vk~v~GTa~SmGi~V~ 140 (140)
T CHL00127 80 AKAAGIKKGSGEPNKKKVGSITIKQLEEIAQIKLPDLNTISLSKAIKIIEGTAKNMGISIK 140 (140)
T ss_pred HHHhCCCcCCCCCCCeecceecHHHHHHHHHHHhhhhccccHHHHHHHhHeeheeceEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999973
No 4
>PRK00140 rplK 50S ribosomal protein L11; Validated
Probab=100.00 E-value=6.2e-57 Score=379.62 Aligned_cols=141 Identities=65% Similarity=1.052 Sum_probs=138.8
Q ss_pred CccceeEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHH
Q psy15220 1 MVKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLI 80 (289)
Q Consensus 1 m~k~~~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll 80 (289)
|+|++.++|+|+++||+|+|+|||||+|||+|||+|+|||+||++|++|+ |++|||+|+||+||+|+|+|++||+||||
T Consensus 1 m~k~~~~~ikl~v~aG~A~p~PplgP~LG~~Gini~~f~k~fN~~T~~~~-g~~vpV~i~v~~drsf~~~v~~Pp~s~ll 79 (141)
T PRK00140 1 MAKKVVGYIKLQIPAGKANPAPPVGPALGQRGVNIMEFCKAFNARTQDQK-GLPIPVVITVYEDRSFTFITKTPPASVLL 79 (141)
T ss_pred CCcccceEEEEEEecCccCCCCCCcccccccCCCHHHHHHHHHHHHhhcC-CCeEEEEEEEecCCeEEEEEcCCCHHHHH
Confidence 88999999999999999999999999999999999999999999999995 99999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceeccc
Q psy15220 81 KKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDK 142 (289)
Q Consensus 81 ~ka~g~~~g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~ 142 (289)
+|++|+++||++|+++++|+||++||||||+.|++|+++.+|+++||+|+|||+||||+|++
T Consensus 80 ~k~~g~~~gs~~p~~~~vG~it~~~v~eIA~~K~~d~~~~~l~~~vk~VlGTa~SmGi~V~g 141 (141)
T PRK00140 80 KKAAGIEKGSGEPNKEKVGKITRAQVREIAETKMPDLNAADIEAAMRMIAGTARSMGIVVEG 141 (141)
T ss_pred HHHhCCCCCCCCCCCeEEeeEcHHHHHHHHHHHHHhhCCCcHHHHHHHhheeeeEeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999985
No 5
>PRK01143 rpl11p 50S ribosomal protein L11P; Validated
Probab=100.00 E-value=9.2e-57 Score=386.23 Aligned_cols=152 Identities=35% Similarity=0.634 Sum_probs=146.7
Q ss_pred EEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEE-ecCCeEEEEEeCCChHHHHHHHhC
Q psy15220 7 GFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITV-FSDKSFTFKKKVTPVTFLIKKAAG 85 (289)
Q Consensus 7 ~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v-~~drsf~~~v~~Pp~s~ll~ka~g 85 (289)
++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++|++|+ |++|||+|+| |+||+|+|++++||+||||+||+|
T Consensus 3 ~~ikl~v~aG~A~p~PplGPaLG~~Gini~~f~k~fN~~T~~~~-g~~vpV~Itv~~~drsf~~~vk~Pp~s~ll~kaag 81 (163)
T PRK01143 3 KVVEVLVEGGKATPGPPLGPALGPLGLNVKQVVQEINEKTKDFK-GMQVPVKVIVDTDTKKFEIEVGIPPTTALIKKELG 81 (163)
T ss_pred eEEEEEEecCccCCCCCCcccccccCCCHHHHHHHHHHHhhhcC-CCeEeEEEEEEeCCceEEEEECCCCHHHHHHHHhC
Confidence 47999999999999999999999999999999999999999996 9999999999 999999999999999999999999
Q ss_pred CCCCCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceecccccccchhHHHHHHHHhhccccCC
Q psy15220 86 IQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDKNKIYSFDSAITLIKEAATAKFDE 165 (289)
Q Consensus 86 ~~~g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~k~~ysl~eAi~~ik~~~~gkFde 165 (289)
+++||++|+++++|+||++||||||+.|++|+++.+|+++||+|+||||||||+|++++|. +++++.+.|.+++
T Consensus 82 ~~kgs~~p~~~~vG~It~~qv~eIA~~K~~d~~~~~l~~~vk~VlGTarSmGi~V~g~~pk------ev~~~i~~g~~~~ 155 (163)
T PRK01143 82 IEKGSGEPGHEVVGNLSFEQVVKIAIMKKDDLLSYDLKAAVKEVLGTCVSMGVTVEGKDPK------EVQKEVDEGKYDD 155 (163)
T ss_pred CcCCCCCCCCceeeeecHHHHHHHHHHHhhhhccccHHHHHHHHHhhHhhceEEEecCCHH------HHHHHcCcccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988 7788888887765
No 6
>PLN03072 60S ribosomal protein L12; Provisional
Probab=100.00 E-value=8.9e-55 Score=374.16 Aligned_cols=150 Identities=19% Similarity=0.278 Sum_probs=143.3
Q ss_pred eEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcC-CcCCCceeEEEEEecCCeEEEEEeCCChHHHHHHHh
Q psy15220 6 TGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQG-IELGTPIPVIITVFSDKSFTFKKKVTPVTFLIKKAA 84 (289)
Q Consensus 6 ~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~-~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ka~ 84 (289)
..+|+|+++||+|+|+|||||+|||+|||+|+||++||++|++ |+ |++|||+|+||+ |||+|++ +||+|+||+||+
T Consensus 10 ~~~i~l~v~aG~A~P~PplGPaLG~~GvNi~~f~k~fN~~T~~~~~-G~~VpV~Itv~~-rsf~~~v-~Pp~s~LLkKa~ 86 (166)
T PLN03072 10 VVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWK-GLRVTVKLTVQN-RQAKVSV-VPSAAALVIKAL 86 (166)
T ss_pred cEEEEEEEEcCccCCCCCCccccccCCCCHHHHHHHHHHHhhhhcC-CCeEEEEEEEEC-CeEEEEe-CCCHHHHHHHHh
Confidence 3489999999999999999999999999999999999999996 96 999999999996 9999999 999999999999
Q ss_pred CCCCCCCC--CCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceecccccccchhHHHHHHHHhhccc
Q psy15220 85 GIQKGSAK--PHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDKNKIYSFDSAITLIKEAATAK 162 (289)
Q Consensus 85 g~~~g~~~--~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~k~~ysl~eAi~~ik~~~~gk 162 (289)
|+++||++ |+++|+|+||++||||||+.|++|+++.+|+++||+|+||||||||+|+++++. +++++++.|.
T Consensus 87 g~~kgs~~~~~~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~avk~VlGTarSmGi~V~gk~pk------ev~~~i~~G~ 160 (166)
T PLN03072 87 KEPERDRKKVKNIKHNGNISLDDVIEIAKIMRPRSMAKELAGTVKEILGTCVSVGCTVDGKDPK------DLQQEIDDGE 160 (166)
T ss_pred CCCCCCCccCCCCeeeeeecHHHHHHHHHHHHHHhCcccHHHHHHHhHheeeeCeEEEeCCCHH------HHHHHHhCCC
Confidence 99999998 677999999999999999999999999999999999999999999999999988 7788888888
Q ss_pred cC
Q psy15220 163 FD 164 (289)
Q Consensus 163 Fd 164 (289)
|+
T Consensus 161 ~~ 162 (166)
T PLN03072 161 VE 162 (166)
T ss_pred ee
Confidence 76
No 7
>smart00649 RL11 Ribosomal protein L11/L12.
Probab=100.00 E-value=1.4e-54 Score=361.89 Aligned_cols=132 Identities=64% Similarity=0.997 Sum_probs=129.9
Q ss_pred EEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHHHHHhCCCC
Q psy15220 9 IKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIKKAAGIQK 88 (289)
Q Consensus 9 i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ka~g~~~ 88 (289)
|+|+++||+|+|+|||||+|||+|||+|+||++||++|++|+ |++|||+|+||+||+|+|++++||+||||+|++|+++
T Consensus 1 ikl~v~aG~A~p~PplgP~LG~~Gini~~f~k~fN~~T~~~~-g~~vpV~I~v~~dksf~~~v~~P~~s~ll~k~~g~~k 79 (132)
T smart00649 1 IKLQIPAGKANPAPPLGPALGQLGINIMEFCKEFNARTKDKK-GLPIPVKITVYNDKSFTFIIKTPPASFLLKKAAGIEK 79 (132)
T ss_pred CEEEEecCccCCCCCcccccccCCCCHHHHHHHHHHHHhhcC-CCeEeEEEEEeCCCeEEEEEcCCCHHHHHHHHhCCCC
Confidence 589999999999999999999999999999999999999986 9999999999999999999999999999999999999
Q ss_pred CCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceecc
Q psy15220 89 GSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFD 141 (289)
Q Consensus 89 g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~ 141 (289)
||++|+++++|+||++||||||+.|++|+++.+|+++||+|+|||+||||+|+
T Consensus 80 gs~~p~~~~~g~it~~~v~eIA~~K~~d~~~~~l~~~~k~V~GTa~SmGi~V~ 132 (132)
T smart00649 80 GSKKPGKKKVGNITLDQVYEIAKIKRPDLNAKDLEAAVKEILGTARSMGITVE 132 (132)
T ss_pred CCCCCCCeeeeEEcHHHHHHHHHHHHHHhcchhHHHHHHHHHhhHhcceEEeC
Confidence 99999999999999999999999999999999999999999999999999985
No 8
>cd00349 Ribosomal_L11 Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal protein L12, which is distinct from the L12 involved in the formation of the L7/L12 stalk. The C-terminal domain (CTD) of L11 is essential for binding 23S rRNA, while the N-terminal domain (NTD) contains the binding site for the antibiotics thiostrepton and micrococcin. L11 and 23S rRNA form an essential part of the GTPase-associated region (GAR). Based on differences in the relative positions of the L11 NTD and CTD during the translational cycle, L11 is proposed to play a significant role in the binding of initiation factors, elongation factors, and release factors to the ribosome. Several factors, including the class I release factors RF1 and RF2, are known to interact directly with L11. In eukaryotes, L11 has been im
Probab=100.00 E-value=4.5e-54 Score=358.49 Aligned_cols=131 Identities=59% Similarity=0.968 Sum_probs=129.0
Q ss_pred EEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHHHHHhCCCC
Q psy15220 9 IKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIKKAAGIQK 88 (289)
Q Consensus 9 i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ka~g~~~ 88 (289)
|+++|+||+|+|+|||||+|||+|||+|+||++||++|++|+ |++|||+|+||+||+|+|++++||+||||+||+|+++
T Consensus 1 ikl~v~aG~A~p~PplgP~LG~~Gin~~~f~k~fN~~T~~~~-g~~vpV~itv~~dksf~~~v~~Pp~s~ll~ka~g~~k 79 (131)
T cd00349 1 IKLQVPAGKASPAPPLGPALGQLGVNIMKFCKEFNARTKDYK-GLPVPVKITVYNDRSFTFEVKTPPASALLKKAAGIEK 79 (131)
T ss_pred CEEEEecCccCCCCCcccccccCCCCHHHHHHHHHHHHhhcC-CCeEEEEEEEeCCCeEEEEEcCCCHHHHHHHHhCCCC
Confidence 589999999999999999999999999999999999999995 9999999999999999999999999999999999999
Q ss_pred CCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceec
Q psy15220 89 GSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIF 140 (289)
Q Consensus 89 g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V 140 (289)
|+++|+++++|+||++||||||+.|++|+++.+|+++||+|+|||+||||+|
T Consensus 80 gs~~~~~~~~g~it~~~v~eIA~~K~~dl~~~~l~~~vk~v~GTa~SmGi~V 131 (131)
T cd00349 80 GSKKPNKEKVGNITLDQVYEIAKIKLPDLNAKTLKSAVKEILGTARSMGITV 131 (131)
T ss_pred CCCCCCCeeeeeecHHHHHHHHHHHHhhhcchhHHHHHHHHHhhHhhCeEEC
Confidence 9999999999999999999999999999999999999999999999999986
No 9
>PRK14539 50S ribosomal protein L11/unknown domain fusion protein; Provisional
Probab=100.00 E-value=3.4e-53 Score=370.59 Aligned_cols=139 Identities=44% Similarity=0.689 Sum_probs=134.7
Q ss_pred CccceeEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHH
Q psy15220 1 MVKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLI 80 (289)
Q Consensus 1 m~k~~~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll 80 (289)
|+|++.++|+|+|+||+|+| ||+|||+|||+|+||++||++|++|. |++|||+|+||+||+|+|++++||+||||
T Consensus 2 m~kki~~~Ikl~v~AGkA~P----GPaLG~~GVNi~~FcKefN~~Tk~~~-G~~VPV~ItV~~DRsf~f~vktPptS~LL 76 (196)
T PRK14539 2 AKKEVVKVAKLQFNAGQAKP----GPSLAGVGINMPEFTKQFNDATRDRG-GEPVPVQITVYKDKSFDFKLFTAPASFKI 76 (196)
T ss_pred ccchhheEEEEEEECCccCC----CCcccccCCCHHHHHHHHHHHhhhcC-CceEEEEEEEecCCeEEEEEeCCCHHHHH
Confidence 78889999999999999999 55688999999999999999999986 99999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceeccccc
Q psy15220 81 KKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDKNK 144 (289)
Q Consensus 81 ~ka~g~~~g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~k~ 144 (289)
+|++|+++||++|+++++|+||++||||||+.|++|+++.+|+++||+|+||||||||+|++.+
T Consensus 77 kKaagi~kGs~~p~k~~vG~Itl~qv~eIAk~K~~Dl~~~~Le~avK~VlGTArSMGI~Veg~d 140 (196)
T PRK14539 77 KQAAKIKSGSANSKTTIVGTITLSQLEEIAKYKLPDLNTDDVEEAMHTIAGTAKNMGVLVEGYD 140 (196)
T ss_pred HHHhCCCCCCCCCCCeEEEEecHHHHHHHHHHHhhhhCCCcHHHHHHHHHhhheeCeEEEEccc
Confidence 9999999999999999999999999999999999999999999999999999999999999865
No 10
>PTZ00321 ribosomal protein L11; Provisional
Probab=100.00 E-value=9.3e-53 Score=386.24 Aligned_cols=143 Identities=29% Similarity=0.439 Sum_probs=137.0
Q ss_pred cceeEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcC-CcCCCceeEEEEEecCCeEEEEEeCCChHHHHH
Q psy15220 3 KKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQG-IELGTPIPVIITVFSDKSFTFKKKVTPVTFLIK 81 (289)
Q Consensus 3 k~~~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~-~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ 81 (289)
|+|.+.|||+|+||+|+|+|||||+|||+|||+|+|||+||++|++ |++|++|||+|+||+||||+|+|++||+||||+
T Consensus 47 KkV~~~IKL~VpAGKAtPaPPVGPALGq~GVNImqFCKeFNerTK~~fk~GvpVPV~ITVy~DKSF~F~IktPPtS~LLK 126 (342)
T PTZ00321 47 KRVLHNWRFFIKAGKAATGPPVGQEFSKLGLKAMDFAKSFNDRTKPHFKDDVELIVRIQVYFDKSYLFTIEPPPTAWFIL 126 (342)
T ss_pred CeeeEEEEEEEECCCcCCCCCCcccccccCCCHHHHHHHHHHHHHhhccCCCeEeEEEEEeCCCeEEEEECCCCHHHHHH
Confidence 7899999999999999999999999999999999999999999998 788999999999999999999999999999999
Q ss_pred HHhCCCCCCCCC--CC-ceeecccHHHHHHHHHhhhhccch---hhHHHHHHHhhhcccccceecccccc
Q psy15220 82 KAAGIQKGSAKP--HS-DKVGKLTYLQIKEIATIKNVDLTA---ASISAAMRTIAGSARSMGIIFDKNKI 145 (289)
Q Consensus 82 ka~g~~~g~~~~--~~-~~~g~it~~~v~eIA~~k~~d~~~---~~l~~~vk~v~Gta~smGi~V~~k~~ 145 (289)
||+|+++||++| ++ +++|+||++||||||+.|++|+++ .+|+++||+|+|||+||||+|++++.
T Consensus 127 KAAGI~KGS~~P~~~k~e~VG~ITlkQVyEIAkiK~~DLnal~~~~LesAvK~ViGTARSMGIkVeGKD~ 196 (342)
T PTZ00321 127 RALRKKRRETGPVPLRGHYCALMTLEMAYEIAKMKPRSWGRPEYPLIETRVRRVVGQARRMGVCFIGVDT 196 (342)
T ss_pred HHhCCCCCCCCCCCCCCceEEeccHHHHHHHHHHhhhccccccccCHHHHHHHHHhhHhcCeEEEecccC
Confidence 999999999999 33 799999999999999999999875 79999999999999999999999754
No 11
>KOG3257|consensus
Probab=100.00 E-value=8.5e-51 Score=341.30 Aligned_cols=137 Identities=50% Similarity=0.810 Sum_probs=134.3
Q ss_pred eEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHHHHHhC
Q psy15220 6 TGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIKKAAG 85 (289)
Q Consensus 6 ~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ka~g 85 (289)
...+|+.++||.|.|+||+||+|||+|+|+++||+|||++|++|++|+|+|++|||.+||||+|++++||+||||+||||
T Consensus 19 ~~~ikl~v~Ag~A~~~pp~gP~Lgqr~l~viafckefnarT~~~k~~vplp~kiTv~pDrsftf~iktPpts~lL~kAag 98 (168)
T KOG3257|consen 19 SASIKLIVKAGLAAPAPPLGPALGQRGLNVIAFCKEFNARTKKVKPGVPLPGKITVKPDRSFTFIIKTPPTSWLLKKAAG 98 (168)
T ss_pred eeEEEEeeccccccCCCCCCchhhhcchhHHHhchhhhhhhccccCCCccceeEeecCCCeEEEEecCCChHHHHHHHhC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeecccHHHHHHHHHhhhhccc--hhhHHHHHHHhhhcccccceeccc
Q psy15220 86 IQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLT--AASISAAMRTIAGSARSMGIIFDK 142 (289)
Q Consensus 86 ~~~g~~~~~~~~~g~it~~~v~eIA~~k~~d~~--~~~l~~~vk~v~Gta~smGi~V~~ 142 (289)
+++|+++|+++.+|.||++||||||++|.+|.+ ..+|+++||+|+|||+||||+|+.
T Consensus 99 v~KGs~~p~~~~vG~lTlkhvyeIAkiK~~D~~~q~~~lesi~rsiigtA~smGIkVvp 157 (168)
T KOG3257|consen 99 VEKGSKDPGQEKVGMLTLKHVYEIAKIKLPDPNLQCTTLESICRSIIGTARSMGIKVVP 157 (168)
T ss_pred cccCCCCCcceeeeeEEHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhCccccch
Confidence 999999999999999999999999999999977 889999999999999999999986
No 12
>PTZ00105 60S ribosomal protein L12; Provisional
Probab=100.00 E-value=1.3e-48 Score=328.46 Aligned_cols=134 Identities=19% Similarity=0.284 Sum_probs=127.9
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHHHHHhCCCCCCCCCCCc--eee
Q psy15220 22 PPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIKKAAGIQKGSAKPHSD--KVG 99 (289)
Q Consensus 22 pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ka~g~~~g~~~~~~~--~~g 99 (289)
|||||+|||+|||+|+||++||++|++|+ |++|||+|+|| ||+|+|++ .||+|+||+|++|++.++++++++ ++|
T Consensus 1 ~~lGPaLG~~GvNi~~fck~fN~~T~~~~-G~~vpV~Itv~-drsf~~~v-~Pp~s~ll~k~ag~~~~~~~~~~~~~~vG 77 (140)
T PTZ00105 1 SSLAPKVGPLGLSPKKVGDDIAKATKDWK-GLKVTVKLTVQ-NRQATVEV-VPTASSLLIKALKEPPRDRKKVKNIKHSG 77 (140)
T ss_pred CCCccccccCCCCHHHHHHHHHHHHhhcC-CCeEEEEEEEE-CCEEEEEE-CCCHHHHHHHHhCCCCCCCCCCCcceeee
Confidence 68999999999999999999999999996 99999999999 99999999 599999999999998888888876 999
Q ss_pred cccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceecccccccchhHHHHHHHHhhccccC
Q psy15220 100 KLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDKNKIYSFDSAITLIKEAATAKFD 164 (289)
Q Consensus 100 ~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~k~~ysl~eAi~~ik~~~~gkFd 164 (289)
+||++||||||+.|++|+++.+|+++||+|+||||||||+|++++|. +++++++.|.++
T Consensus 78 ~it~~qv~eIAk~K~~dl~~~~l~~a~k~V~GTarSmGi~V~gk~pk------ev~~~i~~G~~~ 136 (140)
T PTZ00105 78 NLTFDQVIKIARTMRPKSMAKTFKGTVKEVLGTCVSIGCTVDGESPR------DIQEKINNGEIK 136 (140)
T ss_pred EeeHHHHHHHHHHHHhhhCCCcHHHHHHHHHhhheeeeEEEECCCHH------HHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999999988 778888888877
No 13
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-47 Score=339.01 Aligned_cols=149 Identities=46% Similarity=0.783 Sum_probs=145.7
Q ss_pred cccccccchhHHHHHHHHhhccccCCceeEEEEEEeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCCe
Q psy15220 140 FDKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGADI 219 (289)
Q Consensus 140 V~~k~~ysl~eAi~~ik~~~~gkFdesVe~~i~l~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~ 219 (289)
++..+.|++.||++++++.+.++|+||||++++|++|+++++|++||+|.|||++|+..||||||+++.+++|++||||+
T Consensus 15 ~d~~~~~~i~eai~~~ke~~~~kF~etVevav~L~vD~~k~dq~vrg~VvLP~g~gk~vrV~Vfa~g~~~~~A~~AGad~ 94 (228)
T COG0081 15 VDRNKLYSLEEAVKLLKETSKRKFDETVEVAVNLKVDPRKPDQRVRGSVVLPNGTGKTVRVAVFADGEKAEEAKAAGADY 94 (228)
T ss_pred hhhhhhhhHHHHHHHHHhccccCcceEEEEEEEcccCCCCcccccceeEECCCCCCCccEEEEEcChHhHHHHHHcCCCE
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchHHHHHHHcc-CccccEEEECccchHHHHhhccccCCCCCCCCCCCCCCCccHHHHHHHHhccceee
Q psy15220 220 VGMEDLAQKIKSN-EVSCDLVIASPESMHIVSSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRS 288 (289)
Q Consensus 220 vG~~eLi~~Ik~~-~~~~d~~iat~d~m~~l~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~ 288 (289)
||.|||+++|+++ |.+||+|||||||||.+++||++||||||||||++||++.|+.++|+++|+|+++|
T Consensus 95 Vg~edl~e~ik~~r~~~fD~~IAtpdmM~~v~~LG~vLGPRGlMP~Pk~gTvt~Dv~~av~~~K~g~v~~ 164 (228)
T COG0081 95 VGGEDLIELIKNGRAKDFDVFIATPDMMPLVGKLGKVLGPRGLMPNPKTGTVTDDVAKAVEELKKGTVEF 164 (228)
T ss_pred ecHHHHHHHHhCcchhcCCEEEECchHHHHHHHHhhhcCCCCCCCCCCCCCCCcCHHHHHHHHhcCcEEE
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999998
No 14
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=100.00 E-value=1.2e-46 Score=340.58 Aligned_cols=149 Identities=44% Similarity=0.709 Sum_probs=145.0
Q ss_pred cccccccchhHHHHHHHHhhccccCCceeEEEEEEeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCCe
Q psy15220 140 FDKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGADI 219 (289)
Q Consensus 140 V~~k~~ysl~eAi~~ik~~~~gkFdesVe~~i~l~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~ 219 (289)
++ .+.|+++||++++++.+.++|+|+||++|+|++|++++++++||+|.|||+++++.||||||+++.+++|++|||++
T Consensus 15 ~~-~~~y~l~eAi~~~k~~~~~kF~esvel~i~L~id~kk~~~~irg~v~LP~~~gk~~kV~Vfa~~~~~~eAk~aGad~ 93 (229)
T CHL00129 15 IE-KKLYSPEEAINLLKETATAKFIETAEAHISLNIDPKYADQQLRTTVTLPKGTGKTIRIAVLTNEEKITEAKNAGADI 93 (229)
T ss_pred cc-ccccCHHHHHHHHHHhCcCCCCccEEEEEEECCCCCCCCCceeeEEECCCCCCCCcEEEEECChHhHHHHHHcCCCE
Confidence 45 77999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchHHHHHHHccCccccEEEECccchHHHHhhccccCCCCCCCCCCCCCCCccHHHHHHHHhccceeeC
Q psy15220 220 VGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRST 289 (289)
Q Consensus 220 vG~~eLi~~Ik~~~~~~d~~iat~d~m~~l~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~~ 289 (289)
+|++||++.|++||.+||+|||||||||+|.+|||+||||||||||++|||++|+.++|+++|+|+++|.
T Consensus 94 vg~edLi~~ik~~~~~fd~~iAt~d~m~~l~kLgriLGprGlMP~pk~gTvt~di~~~V~~~k~G~v~~r 163 (229)
T CHL00129 94 VGSDDLIEEITKGNLDFDLLIATPDMMPKLAKLGRVLGPRGLMPSPKSGTVTTDLASAINEFKKGKLEYR 163 (229)
T ss_pred eCHHHHHHHHHcCcccCCEEEECHHHHHHHHHhcCcccccCCCCCCCCCCccccHHHHHHHHhcCcEEEE
Confidence 9999999999999999999999999999998899999999999999999999999999999999999873
No 15
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=100.00 E-value=4.8e-45 Score=329.98 Aligned_cols=149 Identities=53% Similarity=0.865 Sum_probs=145.0
Q ss_pred cccccccchhHHHHHHHHhhccccCCceeEEEEEEeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCCe
Q psy15220 140 FDKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGADI 219 (289)
Q Consensus 140 V~~k~~ysl~eAi~~ik~~~~gkFdesVe~~i~l~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~ 219 (289)
++....|++.||++++|+.+.++|+|++|++|+|++|++|+++++||+|.|||+++++.||||||+++++++|+++||++
T Consensus 13 ~~~~~~y~l~eAi~~lk~~~~~~f~esvel~i~L~id~kK~~~~irg~v~LP~~~gk~~kV~Vfa~~~~~~~Ak~aGa~~ 92 (227)
T TIGR01169 13 VDRNKLYSLDEAIALLKETATAKFDETVEVAIRLGIDPRKSDQQVRGTVVLPHGTGKTVRVAVFAKGEKAEEAKAAGADY 92 (227)
T ss_pred cccCCccCHHHHHHHHHhhccCCCCCCEEEEEEECcCCCcCCCeeeEEEECCCCCCCCcEEEEEcCchhHHHHHHcCCCE
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchHHHHHHHccCccccEEEECccchHHHHhhccccCCCCCCCCCCCCCCCccHHHHHHHHhccceee
Q psy15220 220 VGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRS 288 (289)
Q Consensus 220 vG~~eLi~~Ik~~~~~~d~~iat~d~m~~l~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~ 288 (289)
+|++||+++|++||.+||+|||||||||+|..|||+||||||||+|++|||++|+.++|+++++|+++|
T Consensus 93 vg~~eLi~~ik~~~~~fd~~iat~~~m~~l~~Lg~iLGPrGlMP~~k~gtv~~di~~~I~~~k~g~v~~ 161 (227)
T TIGR01169 93 VGSDDLIEKIKKGWLDFDVVIATPDMMRVVGKLGRILGPRGLMPNPKTGTVTADVAKAVKNAKKGQVEF 161 (227)
T ss_pred eCHHHHHHHHHcCCccCCEEEECHHHHHHHHHhccccccccCCCCCCCCCccccHHHHHHHHHcCcEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999987
No 16
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=100.00 E-value=7.2e-45 Score=329.40 Aligned_cols=148 Identities=52% Similarity=0.841 Sum_probs=144.3
Q ss_pred ccccccchhHHHHHHHHhhccccCCceeEEEEEEeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCCee
Q psy15220 141 DKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGADIV 220 (289)
Q Consensus 141 ~~k~~ysl~eAi~~ik~~~~gkFdesVe~~i~l~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~v 220 (289)
+....|++.||++.+++.+.++|+|+||++|+|++|++|+++++||+|.|||+++++.||||||+++.+++|+++||+++
T Consensus 15 ~~~~~y~l~eAi~~lk~~~~~kF~esvel~v~L~id~kK~~~~irg~v~LP~~~gk~~kI~Vfa~~~~~~~Ak~aGa~~v 94 (230)
T PRK05424 15 DRTKLYSLEEAIALVKETATAKFDETVDVAVNLGVDPRKADQQVRGAVVLPHGTGKTVRVAVFAKGEKAEEAKAAGADIV 94 (230)
T ss_pred cccCccCHHHHHHHHHhhccCCCCCcEEEEEEeCCCCCCCCCeeeEEEECCCCCCCCcEEEEECChHhHHHHHHcCCCEe
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHccCccccEEEECccchHHHHhhccccCCCCCCCCCCCCCCCccHHHHHHHHhccceee
Q psy15220 221 GMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRS 288 (289)
Q Consensus 221 G~~eLi~~Ik~~~~~~d~~iat~d~m~~l~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~ 288 (289)
|++||+++|+++|.+||+|||||||||+|.+|||+||||||||+|++||+++|+.++|+++++|+++|
T Consensus 95 g~eeLi~~ik~~~~~fd~~iat~~~m~~l~~Lg~iLGPrGlMP~pk~gTv~~di~~~I~~~k~g~v~~ 162 (230)
T PRK05424 95 GGEDLIEKIKGGWLDFDVVIATPDMMGKVGKLGRILGPRGLMPNPKTGTVTMDVAKAVKEAKAGKVEF 162 (230)
T ss_pred CHHHHHHHHhcCCCcCCEEEECHHHHHHHHHhccccccccCCCCCCCCCcchhHHHHHHHHhcCcEEE
Confidence 99999999999999999999999999999889999999999999999999999999999999999987
No 17
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial. This model represents the mitochondrial homolog of bacterial ribosomal protein L1. Unlike chloroplast L1, this form was not sufficiently similar to bacterial forms to include in a single bacterial/organellar L1.
Probab=100.00 E-value=1.3e-44 Score=304.98 Aligned_cols=137 Identities=34% Similarity=0.569 Sum_probs=131.4
Q ss_pred cchhHHHHHHHHhhcc--ccCCceeEEEEEEeeecCCCceeeeEEEcCCCCCCceEEEEecCccc-HHHHHHcCCCeecc
Q psy15220 146 YSFDSAITLIKEAATA--KFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEK-YEQAKIAGADIVGM 222 (289)
Q Consensus 146 ysl~eAi~~ik~~~~g--kFdesVe~~i~l~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~-~~~Ak~aGa~~vG~ 222 (289)
|+++||++++|+.+.+ +|+|+||++++|+++.++. ++||+|.|||+++++.||||||++++ +++|++|||+++|+
T Consensus 1 y~i~eA~~~lk~~~~~~~~~~etvel~i~L~~~~~~~--~irg~v~LP~~~~k~~kV~Vf~~~~~~~~~Ak~aGa~~vg~ 78 (141)
T TIGR01170 1 YKVIKAFVYLKTKSISMYVPKQSVNLDIGLLMELGKE--SVQGMFSFPHPFGKEPKIAVFTKGASEVEEAREAGADYVGG 78 (141)
T ss_pred CCHHHHHHHHHHhcccCCCCCceEEEEEEECCCCCCC--CceEEEECCCCCCCCCEEEEECCChHHHHHHHHcCCCEeCH
Confidence 8999999999999999 9999999999998776554 49999999999999999999999987 68899999999999
Q ss_pred hHHHHHHHccCcc-ccEEEECccchHHHHhhccccCCCCCCCCCCCCCCCccHHHHHHHHhcc
Q psy15220 223 EDLAQKIKSNEVS-CDLVIASPESMHIVSSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSG 284 (289)
Q Consensus 223 ~eLi~~Ik~~~~~-~d~~iat~d~m~~l~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G 284 (289)
+||+++|++|+++ ||+|||||||||+|..|||+||||||||||++|||++|+.++|+++|+|
T Consensus 79 edLi~~i~~g~~~~fd~~iA~~~~m~~l~~Lg~iLGprGlMP~~k~gTv~~di~~~I~~~k~G 141 (141)
T TIGR01170 79 DDLIKKIEDGEIKPFDYLIAHPDIVPELAQLRRLLGPKGLMPSPKRGTVGDNLLSMIETFKKG 141 (141)
T ss_pred HHHHHHHhcCCcccccEEEECHHHHHHHHHhhcccccCcCCCCCCCCCcccCHHHHHHHHhCc
Confidence 9999999999999 9999999999999999999999999999999999999999999999998
No 18
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed
Probab=100.00 E-value=3.9e-35 Score=263.52 Aligned_cols=139 Identities=29% Similarity=0.476 Sum_probs=128.3
Q ss_pred chhHHHHHHHH-hhccccCCceeEEEEE-EeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCCeecchH
Q psy15220 147 SFDSAITLIKE-AATAKFDESIDISIHL-NVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGADIVGMED 224 (289)
Q Consensus 147 sl~eAi~~ik~-~~~gkFdesVe~~i~l-~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~vG~~e 224 (289)
.+.||++.+++ ...++|+|+||++|+| ++|++++++++||+|.|||+++++.+|||||+++.+++|++|||+++++.|
T Consensus 6 ~~~eai~~~k~~~~~~kf~esvel~v~Lk~id~~k~~~~irg~i~LP~~~~k~~~V~vf~~~~~~~~Ak~aGa~~v~~~e 85 (215)
T PRK04203 6 KIEEAVKEALEEAPKRNFTQSVDLIVNLKDIDLKKPENRIDEEVVLPHGRGKEVKIAVIAKGELALQAKEAGADYVITRE 85 (215)
T ss_pred HHHHHHHHHHHhcccCCCCceEEEEEEecCCCCCccCceeeEEEECCCCCCCCcEEEEEcChHhHHHHHHcCCCEEeCHH
Confidence 57899999998 4789999999999999 999999999999999999999999999999999999999999999777777
Q ss_pred HHHHHHcc-------CccccEEEECccchHHHH-hhccccCCCCCCCCCCCCCCCccHHHHHHHHhccceee
Q psy15220 225 LAQKIKSN-------EVSCDLVIASPESMHIVS-SLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRS 288 (289)
Q Consensus 225 Li~~Ik~~-------~~~~d~~iat~d~m~~l~-~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~ 288 (289)
.+++|.++ +.+||+|||||+|||.|. .||++||||||||+|++||+ |+.++|+++++ .++|
T Consensus 86 ~L~~i~~~~k~~rkl~~~fD~~lA~~~im~~l~k~LGk~lgprgkmP~p~~~t~--di~~~i~~~~~-~~~~ 154 (215)
T PRK04203 86 ELEELGGDKRAAKKLANEYDFFIAEADLMPLIGRYLGPVLGPRGKMPTPLPPNA--DIKPLVERLKN-TVRI 154 (215)
T ss_pred HHHHHhcChHHHhhhhhcCCEEEECHHHHHHHHHHHhhhcCcCCCCCCCcCCCC--CHHHHHHHHhh-ceEE
Confidence 77887665 789999999999999996 59999999999999999998 99999999998 4665
No 19
>PTZ00225 60S ribosomal protein L10a; Provisional
Probab=100.00 E-value=2.8e-33 Score=251.11 Aligned_cols=140 Identities=21% Similarity=0.316 Sum_probs=128.2
Q ss_pred ccchhHHHHH-HHHhhccccCCceeEEEEE-EeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCCeecc
Q psy15220 145 IYSFDSAITL-IKEAATAKFDESIDISIHL-NVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGADIVGM 222 (289)
Q Consensus 145 ~ysl~eAi~~-ik~~~~gkFdesVe~~i~l-~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~vG~ 222 (289)
.-.+.+|++. +++...++|+|+||++|+| ++|+++ ++++||+|.|||++++..+|||||+++.+++|+++||+++|.
T Consensus 6 ~~~i~~Av~~~lk~~~~~kF~Etvdl~v~Lk~iDp~k-d~~irg~v~LPhg~gk~~kV~v~~~~~~~~~Ak~aGad~v~~ 84 (214)
T PTZ00225 6 PQTLSEAIQAVLKVDKERKFKESIDLQVNLKNYDPQK-DKRFSGSLKLPNVCRPRMTVCLLCDLVHEDIAKKEGVPTMNQ 84 (214)
T ss_pred HHHHHHHHHHHHHhcccCCCCceEEEEEeccCcCCCc-CcccceeEECCCCCCCCcEEEEECChHHHHHHHHCCCCEECH
Confidence 4468899999 5577889999999999999 999998 999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHccC------ccccEEEECccchHHH-HhhccccCCCCCCCCCCCCCCCccHHHHHHHHhccceee
Q psy15220 223 EDLAQKIKSNE------VSCDLVIASPESMHIV-SSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRS 288 (289)
Q Consensus 223 ~eLi~~Ik~~~------~~~d~~iat~d~m~~l-~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~ 288 (289)
+||++++++++ .+||+|||||||||.| +.||+.|+|+|+||++ +|+++|+.++|+++++ +++|
T Consensus 85 e~l~~l~k~~~~~kkl~~~fD~fiA~~~~m~~lgk~LGp~~~p~gK~P~~--~~~~~dl~~~i~~~k~-~v~~ 154 (214)
T PTZ00225 85 EELKKLNKNKKLVKKMCNQYDAFLCSESIIKTVPRLVGPHMHRMGKFPTV--CSPSESLPDKVVELRS-TVKF 154 (214)
T ss_pred HHHHHHHhccHHHHHHHhhCCEEEECHHHHHhhhhhcCCCCCcCCCCCcc--cCCccCHHHHHHHHhh-eeEE
Confidence 99999988885 8999999999999998 5688888888999984 5578999999999999 8876
No 20
>PTZ00029 60S ribosomal protein L10a; Provisional
Probab=99.97 E-value=1.3e-30 Score=234.29 Aligned_cols=138 Identities=25% Similarity=0.360 Sum_probs=114.1
Q ss_pred chhHHHHHHHH---hhccccCCceeEEEEE-EeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCCeecc
Q psy15220 147 SFDSAITLIKE---AATAKFDESIDISIHL-NVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGADIVGM 222 (289)
Q Consensus 147 sl~eAi~~ik~---~~~gkFdesVe~~i~l-~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~vG~ 222 (289)
.+.+|+.-+.+ ...++|+|+||++|+| ++|+++ ++++||+|.|||++|+..+|||||+++.+++|+++||+++|.
T Consensus 8 ~~~~av~~~~~~~~~~~~~f~esv~~~i~Lk~id~~~-~~~ir~~v~LP~~~gk~~~v~V~a~~~~~~~Ak~aGa~vvg~ 86 (216)
T PTZ00029 8 ALRKAIAEILEGSEEKKRKFVETVELQIGLKDYDTQK-DKRFSGSVKLPNVPKPNLKVCVLGDAVHCDEAKKLGLDFMDI 86 (216)
T ss_pred HHHHHHHHHHhhccccccCCceEEEEEEEcCCCCCCc-CcccceeEecCCCCCCCcEEEEECCcHHHHHHHHcCCCEecH
Confidence 45666666663 4478999999999999 899998 999999999999999999999999999999999999999999
Q ss_pred hHHHHH-----HHccC-ccccEEEECccchHHH-HhhccccCCCCCCCCCCCCCCCccHHHHHHHHhccceee
Q psy15220 223 EDLAQK-----IKSNE-VSCDLVIASPESMHIV-SSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRS 288 (289)
Q Consensus 223 ~eLi~~-----Ik~~~-~~~d~~iat~d~m~~l-~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~ 288 (289)
+||+++ +++++ .+||+|||++++||.| +.||+.|+|+++||.+. |+++|+.++|+++++ .++|
T Consensus 87 edL~~~~k~~k~~kkl~~~fD~flA~~~im~~l~riLGp~l~p~~K~P~~v--~~~~d~~~~i~~~k~-~v~~ 156 (216)
T PTZ00029 87 EGLKKFNKNKKLVKKLAKKYDAFLASQSLLPQIPRLLGPGLNKAGKFPTLI--THNDDIEDKINELKS-SVKF 156 (216)
T ss_pred HHHHHhhhhHHHHhcccccCCEEEECHHHHHHHHHHhccccccCCCCCCcc--cCccCHHHHHHHHHh-eEEE
Confidence 999984 44444 7999999999999988 33444444444444443 458999999999986 5665
No 21
>KOG0886|consensus
Probab=99.97 E-value=3.2e-30 Score=213.67 Aligned_cols=147 Identities=22% Similarity=0.336 Sum_probs=139.0
Q ss_pred eEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHHHHHhC
Q psy15220 6 TGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIKKAAG 85 (289)
Q Consensus 6 ~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ka~g 85 (289)
.++|+|++.||+...+..|+|.+||+|+.++.+.+++.++|++|+ |..|.|.++++ ||...++| .|++|.|++|+++
T Consensus 12 iK~vylrc~GgEVgatsaLApKIgPLGLSpKkvGedIaKaT~dwK-gl~vtvkLtIq-nR~A~i~V-vpSasaLiIkaLK 88 (167)
T KOG0886|consen 12 IKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGEDIAKATGDWK-GLRVTVKLTIQ-NRQAQIEV-VPSASALIIKALK 88 (167)
T ss_pred eEEEEEEeecCccccccccccccccccCCccccchHHHHhhcccc-cceEEEEEEec-CcccceEE-cccHHHHHHHHhc
Confidence 568999999999999999999999999999999999999999999 99999999998 99999999 8999999999999
Q ss_pred CCCCCCCCCCc--eeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceecccccccchhHHHHHHHHhhcc
Q psy15220 86 IQKGSAKPHSD--KVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDKNKIYSFDSAITLIKEAATA 161 (289)
Q Consensus 86 ~~~g~~~~~~~--~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~k~~ysl~eAi~~ik~~~~g 161 (289)
++.+++++.++ |+|+|+|+++.+||++.++.+.++.|.+++++|+|||+|+||+|+++.|+ ++++++..|
T Consensus 89 EPpRDRKk~knikh~Gni~~deiv~iar~mr~rS~a~~l~gt~keilgt~~svgc~vDgk~Ph------di~~~i~~G 160 (167)
T KOG0886|consen 89 EPPRDRKKQKNIKHSGNITFDEIVEIARIMRPRSLARELSGTVKEILGTAQSVGCTVDGKHPH------DIIDEINAG 160 (167)
T ss_pred CCcchhhhhccccccCcccHHHHHHHHHHhhhHhhhhhhhhhHHHHhchhhhcccccCCCChH------HHHhhhcCC
Confidence 99999998665 99999999999999999999999999999999999999999999999999 455555544
No 22
>KOG1569|consensus
Probab=99.96 E-value=1.1e-28 Score=226.70 Aligned_cols=143 Identities=34% Similarity=0.536 Sum_probs=127.4
Q ss_pred ccccchhHHHHHHHHhh----ccccCCceeEEEEEEeeecC---CCceeeeEEEcCCCCC--CceEEEEecCc-ccHHHH
Q psy15220 143 NKIYSFDSAITLIKEAA----TAKFDESIDISIHLNVNIKR---SDQIVRGSIVLPFSTG--KKIYIAAFVPK-EKYEQA 212 (289)
Q Consensus 143 k~~ysl~eAi~~ik~~~----~gkFdesVe~~i~l~vd~kk---~~~~~rg~v~LP~~~~--k~~kI~Vfa~~-~~~~~A 212 (289)
++.|++.+|++++|+.. ...+.+++.+.|+|++-..+ ....+.+++..||+++ ..++|+||+.+ +..++|
T Consensus 87 r~~y~vq~a~~~~ke~~~~sa~~~pk~~~~l~i~l~~~a~~~~k~~~~~~~~v~vP~Pf~~ge~r~IavFtn~~~kveeA 166 (323)
T KOG1569|consen 87 RQIYEVQKAVHLHKELQILSAYNVPKQPVNLRIELNMLAEKETKGVAPLQGSVTVPHPFAHGEIRKIAVFTNDASKVEEA 166 (323)
T ss_pred cchhhHHHHHHHHHHhccchhhhCCCCceeeeEEeeeeeeeeccccCCCceeEeccccCCCCceEEEEEecCChHHHHHH
Confidence 46689999999999987 34688999999999887654 3457788999999984 47789999998 579999
Q ss_pred HHcCCCeecchHHHHHHHccCc--cccEEEECccchHHHHhhccccCCCCCCCCCCCCCCCccHHHHHHHHhcc-cee
Q psy15220 213 KIAGADIVGMEDLAQKIKSNEV--SCDLVIASPESMHIVSSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSG-QIR 287 (289)
Q Consensus 213 k~aGa~~vG~~eLi~~Ik~~~~--~~d~~iat~d~m~~l~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G-~~~ 287 (289)
+++||+++||.|||++|++|++ |||++||||||||.|..|+++|||| ||||+.|||++||.++|++||+| .++
T Consensus 167 rEaGA~l~GG~dLIkkI~~Gei~~Dyd~~vA~Pdim~~l~~Lr~iL~~r--~Pn~k~gtvg~nipemieeFk~G~~i~ 242 (323)
T KOG1569|consen 167 REAGAALAGGTDLIKKIKSGEIVADYDFYVAHPDIMPELNRLRKILGPR--FPNPKRGTVGRNIPEMIEEFKNGHEIK 242 (323)
T ss_pred HhccccccccHHHHHHhhcCeEEEeeceeeecchHHHHHHHHHHHhccc--CCCcccCccccchHHHHHHhhCCcccc
Confidence 9999999999999999999987 6779999999999998899999998 99999999999999999999999 443
No 23
>cd00403 Ribosomal_L1 Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds its own mRNA. Like several other large ribosomal subunit proteins, L1 displays RNA chaperone activity. L1 is one of the largest ribosomal proteins. It is composed of two domains that cycle between open and closed conformations via a hinge motion. The RNA-binding site of L1 is highly conserved, with both mRNA and rRNA binding the same binding site.
Probab=99.95 E-value=1.3e-27 Score=212.63 Aligned_cols=136 Identities=43% Similarity=0.739 Sum_probs=128.0
Q ss_pred hhHHHHHHHHhh--ccccCCceeEEEEEEeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCCeecchHH
Q psy15220 148 FDSAITLIKEAA--TAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGADIVGMEDL 225 (289)
Q Consensus 148 l~eAi~~ik~~~--~gkFdesVe~~i~l~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~vG~~eL 225 (289)
+.+|++.+++.+ ...|+++++++|+|+....+++.+++|.|.|||+++++.+|||||+++++++|+++||+++|++||
T Consensus 1 ~~~Ai~~l~~~~~~~~~~~~~v~l~i~l~~~~~~~~~~~~~~i~LPh~~~~~~~i~v~~~d~~~~~a~~~~a~vig~~~L 80 (208)
T cd00403 1 LEEAIKALKKTSVKKRKFDETVELQINLKKDDRKKDQRIRGTVILPHGLGKDVKVCVFAKDEQAKEAKAAGADVVGGEDL 80 (208)
T ss_pred CHHHHHHHHHhccccCCCCceEEEEEEeCCCCCccccccceeEECCCCCCCCeEEEEEcChHhHHHHHHcCCCEEcHHHH
Confidence 468999999998 889999999999997666666889999999999999999999999999999999999999999999
Q ss_pred HHHHHccC-----ccccEEEECccchHHH-HhhccccCCCCCCCCCCCCCCCccHHHHHHHHhc
Q psy15220 226 AQKIKSNE-----VSCDLVIASPESMHIV-SSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKS 283 (289)
Q Consensus 226 i~~Ik~~~-----~~~d~~iat~d~m~~l-~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~ 283 (289)
++++++++ .+||+|||++++|+.+ +.||++|||||+||+++.||+++|+.++|+++++
T Consensus 81 ~~~~~~~~~~~l~~~~D~fla~~~~~~~~~~~lgk~~~~k~k~P~~~~~t~~~~l~~~i~~~~~ 144 (208)
T cd00403 81 KKKIKNGEAKKLAKDFDLFLADPRIMMLLPKLLGKVLGPRGKMPNPKTGTVTEDLAKAIEEAKS 144 (208)
T ss_pred HHHhhcchhhhhhhcCCEEEECHHHHHHHHHHhccccccCCCCCcCCCCCCcccHHHHHHHHHh
Confidence 99999887 7999999999999988 7899999999999999999999999999999987
No 24
>PF00298 Ribosomal_L11: Ribosomal protein L11, RNA binding domain; InterPro: IPR020783 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L11 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L11 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacteria, plant chloroplast, red algal chloroplast, cyanelle and archaeabacterial L11; and mammalian, plant and yeast L12 (YL15). L11 is a protein of 140 to 165 amino-acid residues. In E. coli, the C-terminal half of L11 has been shown [] to be in an extended and loosely folded conformation and is likely to be buried within the ribosomal structure.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 1VQN_I 2OTJ_I 3G6E_I 3CME_I 1YIJ_I 1YI2_I 3G4S_I 3CMA_I 3I55_I 1VQ7_I ....
Probab=99.94 E-value=1.5e-27 Score=178.24 Aligned_cols=69 Identities=54% Similarity=0.807 Sum_probs=67.8
Q ss_pred eCCChHHHHHHHhCCCCCCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceec
Q psy15220 72 KVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIF 140 (289)
Q Consensus 72 ~~Pp~s~ll~ka~g~~~g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V 140 (289)
++||+||||+||+|+++||++|+++++|+||++||||||+.|+.|+++.+|+++|++|+|||+||||+|
T Consensus 1 K~Pp~s~llkkaagi~kGs~~p~~~~vG~it~~~i~eIAk~K~~d~~~~~l~~~~k~v~Gta~SmGi~V 69 (69)
T PF00298_consen 1 KTPPTSWLLKKAAGIKKGSSKPGKEKVGTITLKQIYEIAKIKQKDLNAKSLESAVKSVIGTARSMGIKV 69 (69)
T ss_dssp SSSTHHHHHHHHHTTSSSSSSTTTSSSEEEEHHHHHHHHHHHTTTSSSSSHHHHHHHHHHHHHTTTEEE
T ss_pred CCCChHHHHHHHhCCCCCCCCCCCceeeeecHHHHHHHHHHhhcccccCCHHHHHHHHHHHHhcCceEC
Confidence 589999999999999999999999999999999999999999999999999999999999999999986
No 25
>PF03946 Ribosomal_L11_N: Ribosomal protein L11, N-terminal domain; InterPro: IPR020784 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L11 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L11 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacteria, plant chloroplast, red algal chloroplast, cyanelle and archaeabacterial L11; and mammalian, plant and yeast L12 (YL15). L11 is a protein of 140 to 165 amino-acid residues. In E. coli, the C-terminal half of L11 has been shown [] to be in an extended and loosely folded conformation and is likely to be buried within the ribosomal structure.; PDB: 2ZJQ_F 2ZJP_F 3CF5_F 2WRJ_K 2WH4_K 2WRL_K 3FIN_L 2X9U_K 3I8I_L 2XUX_K ....
Probab=99.94 E-value=8.3e-27 Score=169.64 Aligned_cols=60 Identities=60% Similarity=1.121 Sum_probs=58.0
Q ss_pred EEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeE
Q psy15220 8 FIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSF 67 (289)
Q Consensus 8 ~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf 67 (289)
+|+|+|+||+|+|+|||||+|||+|||+++||+|||++|++|++|++|||+|+||+||||
T Consensus 1 ~i~l~v~aG~A~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~k~G~~v~V~i~v~~d~sf 60 (60)
T PF03946_consen 1 VIKLRVPAGKATPAPPLGPALGPLGINIKKFCKDFNKATKDYKPGIPVPVKITVYNDKSF 60 (60)
T ss_dssp EEEEEEETTSSSSTTTSTHHHHTTTS-HHHHHHHHHHHTTTCTTSSEEEEEEEEETTSEE
T ss_pred CEEEEEecCcccCCCCcCcccccCCCCHHHHHHHHHHHHhcccCCCEEEEEEEEeCCCCC
Confidence 589999999999999999999999999999999999999999999999999999999998
No 26
>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L1 is the largest protein from the large ribosomal subunit. The L1 protein contains two domains: 2-layer alpha/beta domain and a 3-layer alpha/beta domain (interrupts the first domain). In Escherichia coli, L1 is known to bind to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups: Eubacterial L1. Algal and plant chloroplast L1. Cyanelle L1. Archaebacterial L1. Vertebrate L10A. Yeast SSM1. ; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3QOY_A 3BBO_D 1VSA_A 1VSP_A 2NOQ_G 3IZS_A 1S1I_A 3O5H_A 3O58_A 2WRL_C ....
Probab=99.82 E-value=4.4e-20 Score=165.34 Aligned_cols=134 Identities=32% Similarity=0.444 Sum_probs=113.2
Q ss_pred HHHHHHH----hhccccCCceeEEEEEEeeecCCCcee-eeEEEcCCCCC-CceEEEEecCcccHH---------HHHHc
Q psy15220 151 AITLIKE----AATAKFDESIDISIHLNVNIKRSDQIV-RGSIVLPFSTG-KKIYIAAFVPKEKYE---------QAKIA 215 (289)
Q Consensus 151 Ai~~ik~----~~~gkFdesVe~~i~l~vd~kk~~~~~-rg~v~LP~~~~-k~~kI~Vfa~~~~~~---------~Ak~a 215 (289)
.+++++. ....+++++|++++.+...+.+.+.++ ++.|.|||++. ++.+||||+++.+.+ ++.++
T Consensus 4 L~k~~~~~~~~~~~~~~~~~v~l~i~~~~~~~~~~~~~~~~~i~LPh~~~~~~~~vcli~~d~~~~~~~~~~~~~~~~~~ 83 (220)
T PF00687_consen 4 LKKYIKKKKEENEDDNFDESVYLQITLKKIPKKKDKSFKPGRIPLPHPLYIKNSKVCLIVKDPQKKAKEKEKLEEKAVEA 83 (220)
T ss_dssp HHHHHHHHHHCCCCSSSSTEEEEEEEESSSTTSSCTST-EEEEEBSTSSS-SSSBEEEEESCHHHHHH-------HHHHT
T ss_pred HHHHHHHHHhhcccCCCCcEEEEEEEeCcCCCccccccccceeeecCCCCCCccEEEEEecCcchhhhhhhhhhhhhhhc
Confidence 3444554 356789999999999966666666777 99999999998 899999999876533 35688
Q ss_pred CCCeecchHHHHH---HHccC---ccccEEEECccchHHHHh-hcccc-CCCCCCCCCCCCCC-CccHHHHHHHHhccce
Q psy15220 216 GADIVGMEDLAQK---IKSNE---VSCDLVIASPESMHIVSS-LGKIL-GPKGLMPNIKDGTL-NSDILTAIKNAKSGQI 286 (289)
Q Consensus 216 Ga~~vG~~eLi~~---Ik~~~---~~~d~~iat~d~m~~l~~-lg~iL-GprGlMP~~k~GTv-~~di~~~v~~~k~G~~ 286 (289)
|++++|+++|.++ +++++ .+||+|||++++|+.|.+ ||++| ||||+||+|.. + .+|+.+.|+++.++..
T Consensus 84 ~~~vi~~~~L~~~~~~~~~~r~l~~~~d~flad~~i~~~l~~~Lgk~~~~~k~k~P~~v~--~~~~~l~~~i~~~~~~~~ 161 (220)
T PF00687_consen 84 GAKVIGGEELKKKYKTIEAKRKLAKSYDFFLADPRIMPKLPKLLGKIFYGKKGKMPIPVT--LSKEDLKEQIEKALNSTK 161 (220)
T ss_dssp TCSEEECHHHHHHHCHHHHCHHHHHCSSEEEEEGGGHHHHHHHTHHHH-CCTTTSCEEBS--SHTSCHHHHHHHHHTEEE
T ss_pred ccceecHHHHHHHHHHHHHHHHHHhhcCEEEECHHHHHHHHHhhhhheecccCCcceEEe--ccchhHHHHHHHHHCCEE
Confidence 9999999999998 88877 799999999999999965 99999 99999999965 4 3899999999998754
No 27
>KOG1570|consensus
Probab=99.58 E-value=6.7e-16 Score=136.18 Aligned_cols=125 Identities=22% Similarity=0.344 Sum_probs=114.1
Q ss_pred HhhccccCCceeEEEEE-EeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCCeecchHHHHH------H
Q psy15220 157 EAATAKFDESIDISIHL-NVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGADIVGMEDLAQK------I 229 (289)
Q Consensus 157 ~~~~gkFdesVe~~i~l-~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~vG~~eLi~~------I 229 (289)
+.+..+|.++++++++| ++|+.| +.++.|++.|||.+++..++|||++..++.+|++.|.+++.-|+|.+. +
T Consensus 23 ~~k~~~~~~tielQi~Lk~ydp~K-dkr~s~~~~l~~~~~p~~k~cv~gd~~h~~~ak~~~~p~m~~d~lkklnk~Kklv 101 (218)
T KOG1570|consen 23 EFKNRNFVETIELQINLKNYDPQK-DKRFSGSVKLPHAPRPKMKVCVIGDQQHCDEAKAIDLPAMDIDALKKLNKNKKLV 101 (218)
T ss_pred cccCccceeeeeeeecccccChhH-hCcccceEecCCCCCccceeeeechHHHHHHhhcCCCCCcCHHHHhcCcccchHH
Confidence 44467899999999999 999998 899999999999999999999999999999999999999998887654 5
Q ss_pred HccCccccEEEECccchHHH-HhhccccCCCCCCCCCCCCCCCccHHHHHHHHhcc
Q psy15220 230 KSNEVSCDLVIASPESMHIV-SSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSG 284 (289)
Q Consensus 230 k~~~~~~d~~iat~d~m~~l-~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G 284 (289)
++....||+|||+.+...+| +.||+.|...|++|+++. -.+|+.+.+++.|++
T Consensus 102 kklakky~~flase~~ikQlpr~lgp~l~kaGkfps~l~--~~d~l~akv~evk~t 155 (218)
T KOG1570|consen 102 KKLAKKYDAFLASESLIKQLPRILGPGLSKAGKFPSLLV--HGDSLYAKVEEVKST 155 (218)
T ss_pred HHHHHHhhhHHhhHHHHHHhhhhhcccccccccCCcccc--chHHHHHHHHHHHhh
Confidence 66677999999999999999 689999999999999997 788999999998875
No 28
>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates.
Probab=96.58 E-value=0.0031 Score=52.74 Aligned_cols=66 Identities=15% Similarity=0.295 Sum_probs=50.9
Q ss_pred eecccccccchhHHHHHHHHhh---ccccCCceeEEEEEEeeecC--CCceeeeEEEcCCCCCC-ceEEEEe
Q psy15220 138 IIFDKNKIYSFDSAITLIKEAA---TAKFDESIDISIHLNVNIKR--SDQIVRGSIVLPFSTGK-KIYIAAF 203 (289)
Q Consensus 138 i~V~~k~~ysl~eAi~~ik~~~---~gkFdesVe~~i~l~vd~kk--~~~~~rg~v~LP~~~~k-~~kI~Vf 203 (289)
...-....|.++.|+++++.+. ...+.+.|.+.++|++...| .-.+|.+.|.|||++.. ..+|+||
T Consensus 62 ~~lyPr~Iyeve~Ai~mLKkfQ~lDfT~pkQ~VYldL~Ldm~l~KKkkVePF~s~i~lPypF~~eiNKv~VF 133 (133)
T PF13003_consen 62 KRLYPRPIYEVEKAIDMLKKFQILDFTSPKQPVYLDLTLDMKLEKKKKVEPFASVILLPYPFTSEINKVLVF 133 (133)
T ss_pred ceeccccHHHHHHHHHHHHhcccccCCCCCCcEEEeeeehhhhccccccCCCccceecccccccccceeeeC
Confidence 3456678899999999999887 45667788888888765444 33578899999999844 4588887
No 29
>PTZ00029 60S ribosomal protein L10a; Provisional
Probab=91.24 E-value=0.11 Score=47.05 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.9
Q ss_pred HhhccccCCCCCCCCCCCCCCCc
Q psy15220 250 SSLGKILGPKGLMPNIKDGTLNS 272 (289)
Q Consensus 250 ~~lg~iLGprGlMP~~k~GTv~~ 272 (289)
..|||+||| |+||++|.||+..
T Consensus 117 ~~l~riLGp-~l~p~~K~P~~v~ 138 (216)
T PTZ00029 117 PQIPRLLGP-GLNKAGKFPTLIT 138 (216)
T ss_pred HHHHHHhcc-ccccCCCCCCccc
Confidence 678999999 9999999999873
No 30
>PTZ00225 60S ribosomal protein L10a; Provisional
Probab=84.75 E-value=0.64 Score=42.10 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=20.9
Q ss_pred HhhccccCCCCCCCCCCCCCCCccHH
Q psy15220 250 SSLGKILGPKGLMPNIKDGTLNSDIL 275 (289)
Q Consensus 250 ~~lg~iLGprGlMP~~k~GTv~~di~ 275 (289)
..|||+|||+++ |++|.+|+...-.
T Consensus 115 ~~lgk~LGp~~~-p~gK~P~~~~~~~ 139 (214)
T PTZ00225 115 KTVPRLVGPHMH-RMGKFPTVCSPSE 139 (214)
T ss_pred HhhhhhcCCCCC-cCCCCCcccCCcc
Confidence 679999999987 9999999765443
No 31
>KOG1685|consensus
Probab=73.07 E-value=8.5 Score=37.34 Aligned_cols=86 Identities=20% Similarity=0.247 Sum_probs=64.3
Q ss_pred CceEEEEecCccc--------H-HHHHHcCCC----eecchHHHHHHH------ccCccccEEEECccchHHH-Hhhccc
Q psy15220 196 KKIYIAAFVPKEK--------Y-EQAKIAGAD----IVGMEDLAQKIK------SNEVSCDLVIASPESMHIV-SSLGKI 255 (289)
Q Consensus 196 k~~kI~Vfa~~~~--------~-~~Ak~aGa~----~vG~~eLi~~Ik------~~~~~~d~~iat~d~m~~l-~~lg~i 255 (289)
++..||+|.++.+ + +.-.++|.. +++..+|-...+ +....||+|||.--++|.| +-||+.
T Consensus 87 ~~~~vcLIvkD~~~~~~t~~~~~d~l~~~gi~~itkVI~~~~LK~~yksyeaKr~L~~sfDlflaD~RV~~~LP~llGK~ 166 (343)
T KOG1685|consen 87 DDTDVCLIVKDLQQSYLTEEDAEDLLESEGIKSITKVISLSKLKRDYKSYEAKRKLLSSFDLFLADDRVIPLLPKLLGKE 166 (343)
T ss_pred CCCceEEEecCchhccccHHHHHHHHHHcCCccceeeeehHHHHHHHHHHHHHHHHHhhccEEEEcchhHhHHHHHhhhh
Confidence 5788999998742 1 333567887 888888876533 2445899999999999999 679999
Q ss_pred cCCCCCCCCCCCCCCCcc---HHHHHHHHhc
Q psy15220 256 LGPKGLMPNIKDGTLNSD---ILTAIKNAKS 283 (289)
Q Consensus 256 LGprGlMP~~k~GTv~~d---i~~~v~~~k~ 283 (289)
.-.+.+.|-+.+ +..+ +.+.|.+...
T Consensus 167 f~q~kk~Pv~i~--l~k~~~~l~~qi~~a~~ 195 (343)
T KOG1685|consen 167 FYQKKKVPVSIR--LSKKNELLKQQIENACG 195 (343)
T ss_pred hcccccCceEEE--ecccchHHHHHHHHHhh
Confidence 999999998876 4433 5666766543
No 32
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=68.85 E-value=21 Score=28.61 Aligned_cols=83 Identities=14% Similarity=0.262 Sum_probs=58.3
Q ss_pred eEEEEecCcccHHHHHHcCCC---eecchHHHHHHHcc-CccccEEEECccchHHHH-hhccccCCCCCCCCC-----CC
Q psy15220 198 IYIAAFVPKEKYEQAKIAGAD---IVGMEDLAQKIKSN-EVSCDLVIASPESMHIVS-SLGKILGPKGLMPNI-----KD 267 (289)
Q Consensus 198 ~kI~Vfa~~~~~~~Ak~aGa~---~vG~~eLi~~Ik~~-~~~~d~~iat~d~m~~l~-~lg~iLGprGlMP~~-----k~ 267 (289)
.||+|+++.+.+.--+-+|.+ +...+|+.+.+++. ..+|-.++-|.++...++ .+.+. . +..+|.- +.
T Consensus 4 ~kIaVIGD~dtv~GFrLaGi~~~~v~~~ee~~~~i~~l~~~d~gII~Ite~~a~~i~~~i~~~-~-~~~~P~Il~IP~~~ 81 (104)
T PRK01395 4 YKIGVVGDKDSILPFKALGIDVFPVIDEQEAINTLRKLAMEDYGIIYITEQIAADIPETIERY-D-NQVLPAIILIPSNQ 81 (104)
T ss_pred eeEEEEECHHHHHHHHHcCCeeEEecChHHHHHHHHHHhcCCcEEEEEcHHHHHHhHHHHHHh-c-CCCCCEEEEeCCCC
Confidence 489999998888888889998 45677777777664 457999999999999994 35443 3 3344322 46
Q ss_pred CCCC---ccHHHHHHHHh
Q psy15220 268 GTLN---SDILTAIKNAK 282 (289)
Q Consensus 268 GTv~---~di~~~v~~~k 282 (289)
||.. +.+.+.|++.-
T Consensus 82 g~~~~g~~~i~~~v~kAI 99 (104)
T PRK01395 82 GSLGIGLSRIQDNVEKAV 99 (104)
T ss_pred CCccccHHHHHHHHHHHh
Confidence 6654 25777777653
No 33
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=61.69 E-value=23 Score=27.72 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=40.5
Q ss_pred CceEEEEecCcc---------cHHHHHHcCCCe----ecchHHHHHHHccCccccEEEECccchHHHHhhccccCCCC
Q psy15220 196 KKIYIAAFVPKE---------KYEQAKIAGADI----VGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPKG 260 (289)
Q Consensus 196 k~~kI~Vfa~~~---------~~~~Ak~aGa~~----vG~~eLi~~Ik~~~~~~d~~iat~d~m~~l~~lg~iLGprG 260 (289)
+..+|+++|..- ..+.|++.|.++ .+..++ .+-..+||.++.+|.+-..+..+-..+.+.|
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~----~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ 75 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAA----GEKLDDADVVLLAPQVAYMLPDLKKETDKKG 75 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHH----HhhcCCCCEEEECchHHHHHHHHHHHhhhcC
Confidence 346899998753 245566677773 344443 3333579999999999888877776665443
No 34
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=50.43 E-value=39 Score=26.70 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=55.1
Q ss_pred eEEEEecCcccHHHHHHcCCC--e-ecc-hHHHHHHHcc--CccccEEEECccchHHH-HhhccccCCCCCCCCC--CCC
Q psy15220 198 IYIAAFVPKEKYEQAKIAGAD--I-VGM-EDLAQKIKSN--EVSCDLVIASPESMHIV-SSLGKILGPKGLMPNI--KDG 268 (289)
Q Consensus 198 ~kI~Vfa~~~~~~~Ak~aGa~--~-vG~-~eLi~~Ik~~--~~~~d~~iat~d~m~~l-~~lg~iLGprGlMP~~--k~G 268 (289)
.||+|+++.+.+.--+-+|.+ + +.. +|+.+.+++. ..+|-.++-|.++...+ ..+.+.+.. ...|.- .+|
T Consensus 1 mkIaVIGD~dtv~GFrLaGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~-~~~P~ii~IP~ 79 (100)
T PRK02228 1 MEIAVIGSPEFTTGFRLAGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEE-SVEPTVVTLGG 79 (100)
T ss_pred CEEEEEeCHHHHHHHHHcCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhc-CCCCEEEEECC
Confidence 379999998888888899997 3 354 5666667664 45799999999998887 345553331 233321 111
Q ss_pred C-CCccHHHHHHHHhc
Q psy15220 269 T-LNSDILTAIKNAKS 283 (289)
Q Consensus 269 T-v~~di~~~v~~~k~ 283 (289)
. -++.+.+.|++.-.
T Consensus 80 ~~~~~~i~~~v~raIG 95 (100)
T PRK02228 80 GGGSGGLREKIKRAIG 95 (100)
T ss_pred CccchHHHHHHHHHhC
Confidence 1 12457777776543
No 35
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=49.74 E-value=26 Score=34.08 Aligned_cols=86 Identities=29% Similarity=0.305 Sum_probs=47.6
Q ss_pred eEEEEecCcc-cHHHHHHcCCCee-c-c-hHHHHHHHccCccccEEEECccchHHHHhhccccCCC------CCCC-CCC
Q psy15220 198 IYIAAFVPKE-KYEQAKIAGADIV-G-M-EDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPK------GLMP-NIK 266 (289)
Q Consensus 198 ~kI~Vfa~~~-~~~~Ak~aGa~~v-G-~-~eLi~~Ik~~~~~~d~~iat~d~m~~l~~lg~iLGpr------GlMP-~~k 266 (289)
.+|.+|..++ ..+.|++.|||++ - . +|..+.+++. ||.+|-|.. -+.+...-+.|.+. |++| .+.
T Consensus 191 a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~---~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~ 266 (339)
T COG1064 191 AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEI---ADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPI 266 (339)
T ss_pred CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhh---CcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCccc
Confidence 3555565543 4667777888832 2 1 4455555542 999988876 44443333444443 3453 221
Q ss_pred C---------------CCC---CccHHHHHHHHhcccee
Q psy15220 267 D---------------GTL---NSDILTAIKNAKSGQIR 287 (289)
Q Consensus 267 ~---------------GTv---~~di~~~v~~~k~G~~~ 287 (289)
. |+. -.|+.++++-+..|+|.
T Consensus 267 ~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~g~Ik 305 (339)
T COG1064 267 PLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEGKIK 305 (339)
T ss_pred CCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHHHhCCce
Confidence 1 111 13777888777777765
No 36
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=49.32 E-value=44 Score=26.93 Aligned_cols=83 Identities=12% Similarity=0.207 Sum_probs=54.8
Q ss_pred eEEEEecCcccHHHHHHcCCC--e-ecchH--HHHHHHccC-ccccEEEECccchHHHH-hhcccc--CCCC---CCCCC
Q psy15220 198 IYIAAFVPKEKYEQAKIAGAD--I-VGMED--LAQKIKSNE-VSCDLVIASPESMHIVS-SLGKIL--GPKG---LMPNI 265 (289)
Q Consensus 198 ~kI~Vfa~~~~~~~Ak~aGa~--~-vG~~e--Li~~Ik~~~-~~~d~~iat~d~m~~l~-~lg~iL--GprG---lMP~~ 265 (289)
.+|||+++.+.+.-=+-+|++ + +..++ +.+.++... .+|..++-|.+++..++ .+.+.. +..= ..|+|
T Consensus 3 ~~I~VIGd~dtvtGFrLaGv~~~~v~~~~~~~~~~~~~~l~~~~~~iIiite~~a~~i~~~i~~~~~~~~~P~iv~IPs~ 82 (104)
T COG1436 3 MKIAVIGDRDTVTGFRLAGVRVVYVADDEEDELRAALRVLAEDDVGIILITEDLAEKIREEIRRIIRSSVLPAIVEIPSP 82 (104)
T ss_pred eEEEEEEccchhhceeeecceeEEEecChhHHHHHHHHhhccCCceEEEEeHHHHhhhHHHHHHHhhccCccEEEEeCCC
Confidence 489999998887777778888 2 55543 444444432 28999999999999994 465552 2111 34665
Q ss_pred CCCCCCccHHHHHHHH
Q psy15220 266 KDGTLNSDILTAIKNA 281 (289)
Q Consensus 266 k~GTv~~di~~~v~~~ 281 (289)
...-.+++.+.|++.
T Consensus 83 -~~~~~~~~~~~I~k~ 97 (104)
T COG1436 83 -GKEEEEPLRELIRRA 97 (104)
T ss_pred -CCCccchHHHHHHHH
Confidence 333456777777764
No 37
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=47.88 E-value=39 Score=26.82 Aligned_cols=58 Identities=19% Similarity=0.126 Sum_probs=40.1
Q ss_pred EEEEecCcc---------cHHHHHHcCCCe----ecchHHHHHHHccCccccEEEECccchHHHHhhccccCCCC
Q psy15220 199 YIAAFVPKE---------KYEQAKIAGADI----VGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPKG 260 (289)
Q Consensus 199 kI~Vfa~~~---------~~~~Ak~aGa~~----vG~~eLi~~Ik~~~~~~d~~iat~d~m~~l~~lg~iLGprG 260 (289)
+|+++|.+- ..+.|++.|.++ .+..+ +.+-..+||.++.+|.+--.+..+-..+.+.|
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e----~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ 72 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGS----HYDMIPDYDLVILAPQMASYYDELKKDTDRLG 72 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHH----HHHhccCCCEEEEcChHHHHHHHHHHHhhhcC
Confidence 578888642 255677778873 33333 33445589999999998888877877777665
No 38
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=42.44 E-value=1.2e+02 Score=24.13 Aligned_cols=83 Identities=17% Similarity=0.130 Sum_probs=53.1
Q ss_pred EEEEecCcc---------cHHHHHHcCCCe----ecchHHHHHHHccCccccEEEECccchHHHHhhccccCCCC----C
Q psy15220 199 YIAAFVPKE---------KYEQAKIAGADI----VGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPKG----L 261 (289)
Q Consensus 199 kI~Vfa~~~---------~~~~Ak~aGa~~----vG~~eLi~~Ik~~~~~~d~~iat~d~m~~l~~lg~iLGprG----l 261 (289)
||+++|..- ..+.|++.|.++ .+..++-+.+. ..+||.++.+|.+--.+..+-..+.++| .
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~--~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~ 80 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIA--AAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQ 80 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhc--cCCCCEEEEChHHHHHHHHHHHHhhhcCCCEEE
Confidence 688888753 245566677763 45555432211 3478999999998877776766665554 3
Q ss_pred CCCCCCCCCCccHHHHHHHHhc
Q psy15220 262 MPNIKDGTLNSDILTAIKNAKS 283 (289)
Q Consensus 262 MP~~k~GTv~~di~~~v~~~k~ 283 (289)
+|..--|..--|+.++++.++.
T Consensus 81 I~~~~Y~~~~~~~~~~~~~~~~ 102 (104)
T PRK09590 81 IPPQAYIPIPMGIEKMAKLILE 102 (104)
T ss_pred eCHHHcCCCccCHHHHHHHHHh
Confidence 5555555445578877776654
No 39
>KOG1196|consensus
Probab=38.08 E-value=8.2 Score=37.12 Aligned_cols=70 Identities=27% Similarity=0.381 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhhcc-chhhHHHHHHHhhhc-ccccceecccc-----------cccchhHHHHHHHHhh-----ccccC
Q psy15220 103 YLQIKEIATIKNVDL-TAASISAAMRTIAGS-ARSMGIIFDKN-----------KIYSFDSAITLIKEAA-----TAKFD 164 (289)
Q Consensus 103 ~~~v~eIA~~k~~d~-~~~~l~~~vk~v~Gt-a~smGi~V~~k-----------~~ysl~eAi~~ik~~~-----~gkFd 164 (289)
.--++||+..|..+. .-.--.+||-+++|+ |+-|||.|.+- +..-+++|+++-.+.. .+-|.
T Consensus 142 y~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P 221 (343)
T KOG1196|consen 142 YAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFP 221 (343)
T ss_pred HHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChhhhhhhHhccCCccceeccCccCHHHHHHHhCC
Confidence 455789999998873 344567899999996 88999999872 2234455555533311 34688
Q ss_pred CceeEEEE
Q psy15220 165 ESIDISIH 172 (289)
Q Consensus 165 esVe~~i~ 172 (289)
+.||+.+.
T Consensus 222 ~GIDiYfe 229 (343)
T KOG1196|consen 222 EGIDIYFE 229 (343)
T ss_pred CcceEEEe
Confidence 88998875
No 40
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=37.75 E-value=96 Score=20.50 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=26.3
Q ss_pred eEEEEEecCCeEEEEEeCCChHHHHHHHhCCCCCCCC
Q psy15220 56 PVIITVFSDKSFTFKKKVTPVTFLIKKAAGIQKGSAK 92 (289)
Q Consensus 56 pv~i~v~~drsf~~~v~~Pp~s~ll~ka~g~~~g~~~ 92 (289)
||.|++. .++.++.....++..+| +.+|+.-++.+
T Consensus 1 ~Vtv~~d-G~~~~v~T~a~tV~~~L-~~~gI~l~~~D 35 (43)
T PF03990_consen 1 PVTVTVD-GKEKTVYTTASTVGDAL-KELGITLGEED 35 (43)
T ss_pred CEEEEEC-CEEEEEEeCCCCHHHHH-HhCCCCCCCCC
Confidence 5777774 78889998777777776 67888876654
No 41
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=36.51 E-value=84 Score=25.17 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=53.8
Q ss_pred EEEEecCcccHHHHHHcCCC---eecchHHHHHHHc-c-CccccEEEECccchHHHH-hhccccCCCCCCCCCC----CC
Q psy15220 199 YIAAFVPKEKYEQAKIAGAD---IVGMEDLAQKIKS-N-EVSCDLVIASPESMHIVS-SLGKILGPKGLMPNIK----DG 268 (289)
Q Consensus 199 kI~Vfa~~~~~~~Ak~aGa~---~vG~~eLi~~Ik~-~-~~~~d~~iat~d~m~~l~-~lg~iLGprGlMP~~k----~G 268 (289)
||+|+.+.|..--=+.+|.+ .+..+|..+.+.+ . ..+|=.++-|.++...+. .+-.-+. ....|.-. +|
T Consensus 4 kIaVvGd~DtilGFrlaGi~~v~~~~~~e~~~~~~~~l~~~~~gII~iTE~~a~~i~~~~i~~~~-~~~~P~II~Ipipg 82 (104)
T PRK01189 4 CITVIGERDVVLGFRLLGIGDTIEAEGKDLVKKFLEIFNNPKCKYIFVSESTKNMFDKNTLRSLE-SSSKPLVVFIPLPG 82 (104)
T ss_pred eEEEEcCHHHHHHHHHcCCceEEEcCCHHHHHHHHHHHhcCCeEEEEEEHHHHhhCCHHHHHHHh-ccCCCeEEEEeCCC
Confidence 79999999988888889996 4444554444433 3 347889999999988885 3444444 45555432 23
Q ss_pred CC-CccHHHHHHHHh
Q psy15220 269 TL-NSDILTAIKNAK 282 (289)
Q Consensus 269 Tv-~~di~~~v~~~k 282 (289)
+- .+.+.+.|++.-
T Consensus 83 ~~~~~~i~~~ik~ai 97 (104)
T PRK01189 83 ISEEESIEEMAKRIL 97 (104)
T ss_pred CccchhHHHHHHHHh
Confidence 11 346777777653
No 42
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=36.30 E-value=13 Score=30.02 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=29.1
Q ss_pred HHhhhhccchhhHHHHHHHhhhcccccceecccc
Q psy15220 110 ATIKNVDLTAASISAAMRTIAGSARSMGIIFDKN 143 (289)
Q Consensus 110 A~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~k 143 (289)
+++++.......|...|++|.-||+.+|+.+.|-
T Consensus 6 irI~L~s~d~~~LD~~~~~Ive~akrtg~~v~GP 39 (104)
T COG0051 6 IRIRLKSFDHRLLDQVCREIVETAKRTGADVKGP 39 (104)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHhCCeeeCC
Confidence 3556666778899999999999999999999884
No 43
>KOG0455|consensus
Probab=33.34 E-value=34 Score=32.33 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=31.1
Q ss_pred eecccHHHHHHHHHhh-------hhccchhhHHHHHHHhhhcccccceecccc
Q psy15220 98 VGKLTYLQIKEIATIK-------NVDLTAASISAAMRTIAGSARSMGIIFDKN 143 (289)
Q Consensus 98 ~g~it~~~v~eIA~~k-------~~d~~~~~l~~~vk~v~Gta~smGi~V~~k 143 (289)
-|+++|.||.++||.- +.|+|..+...-+ .=-+|-.|..|+..
T Consensus 192 ~~~~sfsdvVk~AKklGYTEPDPRDDLnGmDVARKv---tIl~Ri~Gv~ves~ 241 (364)
T KOG0455|consen 192 PGTLSFSDVVKAAKKLGYTEPDPRDDLNGMDVARKV---TILARILGVRVESM 241 (364)
T ss_pred CCcccHHHHHHHHHHcCCCCCCcccccccchhhhhh---hhhhhhccceeecc
Confidence 3789999999999976 5568887765433 33367778888753
No 44
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=33.29 E-value=51 Score=25.42 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=53.3
Q ss_pred EEEecCcccHHHHHHcCCC--ee--cchHHHHHHHccC--ccccEEEECccchHHHH-hhccccCCCC-----CCCCCCC
Q psy15220 200 IAAFVPKEKYEQAKIAGAD--IV--GMEDLAQKIKSNE--VSCDLVIASPESMHIVS-SLGKILGPKG-----LMPNIKD 267 (289)
Q Consensus 200 I~Vfa~~~~~~~Ak~aGa~--~v--G~~eLi~~Ik~~~--~~~d~~iat~d~m~~l~-~lg~iLGprG-----lMP~~k~ 267 (289)
|+|+++.+...-=+-+|.+ ++ ..+|+.+.+++.. .++-.++-|.+++..+. .+-+....+. -+|++..
T Consensus 1 IavIGd~~~v~gFrLaGv~~~~~~~~~ee~~~~l~~l~~~~~~gIIii~e~~~~~~~~~l~~~~~~~~~P~iv~IP~~~~ 80 (95)
T PF01990_consen 1 IAVIGDRDTVLGFRLAGVEGVYVNTDPEEAEEALKELLKDEDVGIIIITEDLAEKIRDELDEYREESSLPLIVEIPSKEG 80 (95)
T ss_dssp EEEEE-HHHHHHHHHTTSEEEEESHSHHHHHHHHHHHHHHTTEEEEEEEHHHHTTHHHHHHHHHHTSSSSEEEEESTTCC
T ss_pred CEEEeCHHHHHHHHHcCCCCccCCCCHHHHHHHHHHHhcCCCccEEEeeHHHHHHHHHHHHHHHhccCCceEEEcCCCCC
Confidence 6888888877777889999 44 6778877777764 58899999999999883 4544422111 2455443
Q ss_pred --CCCCccHHHHHHH
Q psy15220 268 --GTLNSDILTAIKN 280 (289)
Q Consensus 268 --GTv~~di~~~v~~ 280 (289)
+.-.+.+.++|++
T Consensus 81 ~~~~~~~~i~~~v~r 95 (95)
T PF01990_consen 81 SMGREKDSIRELVKR 95 (95)
T ss_dssp CTSSCCHHHHHHHHH
T ss_pred CCCcchHHHHHHhcC
Confidence 2223567777764
No 45
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=32.60 E-value=91 Score=24.20 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=42.9
Q ss_pred EEEEecCcc---------cHHHHHHcCCCe----ecchHHHHHHHccCccccEEEECccchHHHHhhccccCCC----CC
Q psy15220 199 YIAAFVPKE---------KYEQAKIAGADI----VGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPK----GL 261 (289)
Q Consensus 199 kI~Vfa~~~---------~~~~Ak~aGa~~----vG~~eLi~~Ik~~~~~~d~~iat~d~m~~l~~lg~iLGpr----Gl 261 (289)
||++.|..- ..+.+++.|.++ .+-.+ +..-..+||.++.+|.+...+..+-+.+.+. -.
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~----~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~ 76 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESE----LEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAV 76 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHH----HHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEE
Confidence 366666542 244455567662 33333 3333468999999999988776665544332 24
Q ss_pred CCCCCCCCCCccHHHHHHHH
Q psy15220 262 MPNIKDGTLNSDILTAIKNA 281 (289)
Q Consensus 262 MP~~k~GTv~~di~~~v~~~ 281 (289)
+|..--|+ -|-.+.++.+
T Consensus 77 I~~~~Y~~--~dg~~il~~~ 94 (96)
T cd05564 77 IDMMDYGM--MNGEKVLKQA 94 (96)
T ss_pred cChHhccc--CCHHHHHHHH
Confidence 55544443 2455544443
No 46
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=32.48 E-value=25 Score=31.40 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=22.5
Q ss_pred eEEEEecCcccHHHHHHcCCCeecc
Q psy15220 198 IYIAAFVPKEKYEQAKIAGADIVGM 222 (289)
Q Consensus 198 ~kI~Vfa~~~~~~~Ak~aGa~~vG~ 222 (289)
.|||=+.+.++++.|.++|||++|-
T Consensus 3 vKICGit~~eda~~~~~~GaD~iGf 27 (207)
T PRK13958 3 LKFCGFTTIKDVTAASQLPIDAIGF 27 (207)
T ss_pred EEEcCCCcHHHHHHHHHcCCCEEEE
Confidence 6899898889999999999998884
No 47
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=32.25 E-value=60 Score=26.68 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=25.2
Q ss_pred EEeecccCCCCCCCCcccCCCCCChHHHHHHHHHH
Q psy15220 11 LQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQ 45 (289)
Q Consensus 11 l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~ 45 (289)
+.|+-=+-.--.-+|-.+||.|-++.+.+++.+.+
T Consensus 4 i~iP~~~~P~~N~IG~IIGPgG~tiK~i~~eTg~k 38 (120)
T cd02395 4 VYIPVKQYPKYNFVGLILGPRGNTLKQLEKETGAK 38 (120)
T ss_pred EEcCcccCCCCCeeEEEECCCChHHHHHHHHHCCE
Confidence 34444444334568999999999999999987543
No 48
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=31.29 E-value=76 Score=22.69 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=27.6
Q ss_pred HHHHhhhcccccceecccccccchhHHHHHHHHhhc
Q psy15220 125 AMRTIAGSARSMGIIFDKNKIYSFDSAITLIKEAAT 160 (289)
Q Consensus 125 ~vk~v~Gta~smGi~V~~k~~ysl~eAi~~ik~~~~ 160 (289)
++++.+|- .+.+.+|.+..++.++|+++++..+.
T Consensus 4 avr~~~g~--~~~l~vDan~~~~~~~a~~~~~~l~~ 37 (67)
T PF01188_consen 4 AVREAVGP--DIDLMVDANQAWTLEEAIRLARALED 37 (67)
T ss_dssp HHHHHHST--TSEEEEE-TTBBSHHHHHHHHHHHGG
T ss_pred HHHHhhCC--CCeEEEECCCCCCHHHHHHHHHHcCh
Confidence 56677776 67788999999999999999998874
No 49
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=30.90 E-value=27 Score=31.57 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.5
Q ss_pred ceEEEEecCcccHHHHHHcCCCeec
Q psy15220 197 KIYIAAFVPKEKYEQAKIAGADIVG 221 (289)
Q Consensus 197 ~~kI~Vfa~~~~~~~Ak~aGa~~vG 221 (289)
..|||=+...++++.|.++|||++|
T Consensus 3 ~vKICGlt~~eda~~a~~~gad~iG 27 (208)
T COG0135 3 KVKICGLTRLEDAKAAAKAGADYIG 27 (208)
T ss_pred ceEECCCCCHHHHHHHHHcCCCEEE
Confidence 5689989889999999999999887
No 50
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=30.81 E-value=40 Score=30.79 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=21.5
Q ss_pred CCCcccCCCCCChHH----HHHHHHHHhcCCcCC
Q psy15220 23 PIGPALGQRGLNIME----FCKNFNAQTQGIELG 52 (289)
Q Consensus 23 plgp~LG~~Gin~~~----f~k~fN~~T~~~~~g 52 (289)
+||+.|||+|+=+.- ++.++-+.-++++.|
T Consensus 125 ~Lg~iLGPrGlMP~pk~gTv~~di~~~I~~~k~g 158 (230)
T PRK05424 125 KLGRILGPRGLMPNPKTGTVTMDVAKAVKEAKAG 158 (230)
T ss_pred HhccccccccCCCCCCCCCcchhHHHHHHHHhcC
Confidence 499999999964432 556777777777656
No 51
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=30.22 E-value=1.3e+02 Score=23.76 Aligned_cols=86 Identities=16% Similarity=0.229 Sum_probs=55.8
Q ss_pred eEEEEecCcccHHHHHHcCCC---eec-chHHHHHHHccC--ccccEEEECccchHHHHh-hccccCCC-CCCCCCCCCC
Q psy15220 198 IYIAAFVPKEKYEQAKIAGAD---IVG-MEDLAQKIKSNE--VSCDLVIASPESMHIVSS-LGKILGPK-GLMPNIKDGT 269 (289)
Q Consensus 198 ~kI~Vfa~~~~~~~Ak~aGa~---~vG-~~eLi~~Ik~~~--~~~d~~iat~d~m~~l~~-lg~iLGpr-GlMP~~k~GT 269 (289)
.||+|+++.+.+.-=+-+|.+ .+. .+|+.+.+++.. .+|-.++-|.++...++. +-+.+ |- =..|+. .|+
T Consensus 1 mkIaVIgD~dtv~GFrLaGi~~~~~v~~~ee~~~~l~~l~~~~d~gII~ite~~~~~i~~~i~~~~-P~Ii~IP~~-~g~ 78 (100)
T PRK03957 1 MKIAVVGDRDTVTGFRLAGLTEVYEVKNPEEAKNAIKELVENDEIGIIIITERIAEEIRDLISVAL-PIIVEIPDK-SGS 78 (100)
T ss_pred CEEEEEeCHHHHHHHHHcCCCceEEeCCHHHHHHHHHHHhhCCCeEEEEEcHHHHHHHHHHHhcCC-CEEEEECCC-CCC
Confidence 379999998888777889995 344 377777777654 578999999999999843 33222 21 023442 333
Q ss_pred CC---ccHHHHHHHHhccc
Q psy15220 270 LN---SDILTAIKNAKSGQ 285 (289)
Q Consensus 270 v~---~di~~~v~~~k~G~ 285 (289)
.. +-+.+.|+++-.-.
T Consensus 79 ~~~~~~~i~~~v~raiG~d 97 (100)
T PRK03957 79 IERENDPVKELVRRAIGVE 97 (100)
T ss_pred CccchHHHHHHHHHHhCcc
Confidence 33 23777777765433
No 52
>KOG1198|consensus
Probab=29.36 E-value=89 Score=30.22 Aligned_cols=44 Identities=34% Similarity=0.376 Sum_probs=34.4
Q ss_pred ceEEEEecCcccHHHHHHcCCCe-e--cchHHHHHHHcc-CccccEEE
Q psy15220 197 KIYIAAFVPKEKYEQAKIAGADI-V--GMEDLAQKIKSN-EVSCDLVI 240 (289)
Q Consensus 197 ~~kI~Vfa~~~~~~~Ak~aGa~~-v--G~~eLi~~Ik~~-~~~~d~~i 240 (289)
-.+|.+.|..+..+.+++.|||. + ..++..+++++- ...||++|
T Consensus 183 ~~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVl 230 (347)
T KOG1198|consen 183 AIKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVL 230 (347)
T ss_pred CcEEEEEcccchHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEE
Confidence 36888899999999999999993 3 346688888774 45788877
No 53
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=28.82 E-value=98 Score=27.00 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=18.4
Q ss_pred EEEEecCcccHHHHHHcCCCeec
Q psy15220 199 YIAAFVPKEKYEQAKIAGADIVG 221 (289)
Q Consensus 199 kI~Vfa~~~~~~~Ak~aGa~~vG 221 (289)
|||=+.+.++++.|.++|++++|
T Consensus 2 KiCGi~~~ed~~~a~~~Gvd~ig 24 (203)
T cd00405 2 KICGITTLEDALAAAEAGADAIG 24 (203)
T ss_pred EECCCCCHHHHHHHHHcCCCEEE
Confidence 67777777788888888888777
No 54
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=27.89 E-value=63 Score=34.31 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=62.5
Q ss_pred EEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHHHHHhCCCCC
Q psy15220 10 KLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIKKAAGIQKG 89 (289)
Q Consensus 10 ~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ka~g~~~g 89 (289)
++..+.+. +|-|+=.||-.|++..|.++-|-.-..+ |.+-|..-+..+|+.-+-.+=+|.++|++...+.-...
T Consensus 418 ~L~~P~~~---~~GLsLiLGg~gi~L~dLa~lYa~lAn~---G~~~~L~~~~~~~~~~~~~l~s~~Aaw~i~dIl~~~~~ 491 (733)
T COG4953 418 HLYLPEGA---APGLSLILGGAGITLEDLAQLYAALANQ---GKAGPLRDTLDDDPLTERTLLSPGAAWQILDILSDVAR 491 (733)
T ss_pred CCCCCCcc---CCCeeEEecCCcccHHHHHHHHHHHhcC---CceecccccCCCCCCCCccccCcchHHHHHHHHhccCC
Confidence 45556555 4668999999999999999999988877 99999999998787778888899999999998865554
Q ss_pred C
Q psy15220 90 S 90 (289)
Q Consensus 90 ~ 90 (289)
.
T Consensus 492 P 492 (733)
T COG4953 492 P 492 (733)
T ss_pred C
Confidence 4
No 55
>KOG1197|consensus
Probab=27.24 E-value=1.1e+02 Score=29.09 Aligned_cols=81 Identities=26% Similarity=0.180 Sum_probs=49.3
Q ss_pred HHHHHHHhhccccCCceeEEEEE-EeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCCe---ecchHHH
Q psy15220 151 AITLIKEAATAKFDESIDISIHL-NVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGADI---VGMEDLA 226 (289)
Q Consensus 151 Ai~~ik~~~~gkFdesVe~~i~l-~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~---vG~~eLi 226 (289)
|.-++++...-++-.+|-++.-- ++-.- .+.|=+.. ....|++-++.+..+.|++.||.+ ...||+.
T Consensus 134 Ay~ll~e~y~vkpGhtVlvhaAAGGVGll--------l~Ql~ra~-~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v 204 (336)
T KOG1197|consen 134 AYMLLFEAYNVKPGHTVLVHAAAGGVGLL--------LCQLLRAV-GAHTIATASTAEKHEIAKENGAEHPIDYSTEDYV 204 (336)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccccHHHH--------HHHHHHhc-CcEEEEEeccHHHHHHHHhcCCcceeeccchhHH
Confidence 44556666555666676666443 21100 01222222 255788888889999999999993 5688999
Q ss_pred HHHHccC--ccccEEE
Q psy15220 227 QKIKSNE--VSCDLVI 240 (289)
Q Consensus 227 ~~Ik~~~--~~~d~~i 240 (289)
+.+++-. ...|.+.
T Consensus 205 ~~V~kiTngKGVd~vy 220 (336)
T KOG1197|consen 205 DEVKKITNGKGVDAVY 220 (336)
T ss_pred HHHHhccCCCCceeee
Confidence 8887643 2345444
No 56
>PRK00536 speE spermidine synthase; Provisional
Probab=26.00 E-value=1.5e+02 Score=27.69 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=46.5
Q ss_pred CceEEEEecCcc--cHHHHHHcC--CCeecch-HHHHHHHc-----------------------cCccccEEEECccchH
Q psy15220 196 KKIYIAAFVPKE--KYEQAKIAG--ADIVGME-DLAQKIKS-----------------------NEVSCDLVIASPESMH 247 (289)
Q Consensus 196 k~~kI~Vfa~~~--~~~~Ak~aG--a~~vG~~-eLi~~Ik~-----------------------~~~~~d~~iat~d~m~ 247 (289)
...||+|+..|| .+.|..+-. ++.|--| +.++.-++ ....||++|....-=+
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs~~~~ 151 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQEPDI 151 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcCCCCh
Confidence 457999998776 566776653 4455543 35544333 1246999998733223
Q ss_pred H-HHhhccccCCCCCCCCCCCCCC
Q psy15220 248 I-VSSLGKILGPKGLMPNIKDGTL 270 (289)
Q Consensus 248 ~-l~~lg~iLGprGlMP~~k~GTv 270 (289)
. .+.+.|.|.|-|.|=+ ..|++
T Consensus 152 ~fy~~~~~~L~~~Gi~v~-Qs~sp 174 (262)
T PRK00536 152 HKIDGLKRMLKEDGVFIS-VAKHP 174 (262)
T ss_pred HHHHHHHHhcCCCcEEEE-CCCCc
Confidence 3 3779999999999944 33444
No 57
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=25.57 E-value=36 Score=30.41 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.9
Q ss_pred ceEEEEecCcccHHHHHHcCCCeecc
Q psy15220 197 KIYIAAFVPKEKYEQAKIAGADIVGM 222 (289)
Q Consensus 197 ~~kI~Vfa~~~~~~~Ak~aGa~~vG~ 222 (289)
..|||=+.+.++++.|.++|||++|-
T Consensus 4 ~vKICGi~~~eda~~~~~~Gad~iGf 29 (210)
T PRK01222 4 RVKICGITTPEDAEAAAELGADAIGF 29 (210)
T ss_pred eEEECCCCcHHHHHHHHHcCCCEEEE
Confidence 37899888888999999999999886
No 58
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=24.63 E-value=48 Score=29.13 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.0
Q ss_pred eEEEEecCcccHHHHHHcCCCeecc
Q psy15220 198 IYIAAFVPKEKYEQAKIAGADIVGM 222 (289)
Q Consensus 198 ~kI~Vfa~~~~~~~Ak~aGa~~vG~ 222 (289)
.|||=+.+.+++..|.++|+|++|-
T Consensus 1 vKICGi~~~~da~~~~~~g~d~~Gf 25 (197)
T PF00697_consen 1 VKICGITRPEDARLAAELGADYLGF 25 (197)
T ss_dssp EEEE---SHHHHHHHHHHTSSEEEE
T ss_pred CeECCCCcHHHHHHHHHcCCCEEee
Confidence 4899999999999999999999986
No 59
>PLN02363 phosphoribosylanthranilate isomerase
Probab=24.38 E-value=41 Score=31.21 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.9
Q ss_pred CceEEEEecCcccHHHHHHcCCCeecc
Q psy15220 196 KKIYIAAFVPKEKYEQAKIAGADIVGM 222 (289)
Q Consensus 196 k~~kI~Vfa~~~~~~~Ak~aGa~~vG~ 222 (289)
...|||=+.+.++++.|.++|||++|-
T Consensus 47 ~~VKICGit~~eda~~a~~~GaD~iGf 73 (256)
T PLN02363 47 PLVKMCGITSARDAAMAVEAGADFIGM 73 (256)
T ss_pred ceEEECCCCcHHHHHHHHHcCCCEEEE
Confidence 458999998889999999999999885
No 60
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=23.93 E-value=49 Score=30.28 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=20.9
Q ss_pred CCCcccCCCCCChHH----HHHHHHHHhcCCcCC
Q psy15220 23 PIGPALGQRGLNIME----FCKNFNAQTQGIELG 52 (289)
Q Consensus 23 plgp~LG~~Gin~~~----f~k~fN~~T~~~~~g 52 (289)
+||+.|||.|+=+.- +..++.+.-++++.|
T Consensus 125 kLgriLGprGlMP~pk~gTvt~di~~~V~~~k~G 158 (229)
T CHL00129 125 KLGRVLGPRGLMPSPKSGTVTTDLASAINEFKKG 158 (229)
T ss_pred HhcCcccccCCCCCCCCCCccccHHHHHHHHhcC
Confidence 489999999984442 446666666666655
No 61
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=23.51 E-value=3.4e+02 Score=21.41 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=41.0
Q ss_pred HhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHHHHHhCCCCCC--CCC-----CCceeecccHHHHHHHHHhhhhcc
Q psy15220 45 QTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIKKAAGIQKGS--AKP-----HSDKVGKLTYLQIKEIATIKNVDL 117 (289)
Q Consensus 45 ~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ka~g~~~g~--~~~-----~~~~~g~it~~~v~eIA~~k~~d~ 117 (289)
.|++ |.+|.|.++|+ |.+ .|+-...+....|...-. -.+ -.+.+|..++++++- .++..+
T Consensus 17 ~T~D---~~~v~vd~~v~----y~V---~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~---~~R~~i 83 (124)
T cd03400 17 LSKE---GLSINADVSVQ----YRI---NPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYS---TKRKEI 83 (124)
T ss_pred ECCC---CCEEEEEEEEE----EEE---ChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhh---hhHHHH
Confidence 4566 77888888876 555 466666666666533100 011 112456666666652 112121
Q ss_pred chhhHHHHHHHhhhcccccceeccc
Q psy15220 118 TAASISAAMRTIAGSARSMGIIFDK 142 (289)
Q Consensus 118 ~~~~l~~~vk~v~Gta~smGi~V~~ 142 (289)
+..+...++. .+...|++|+.
T Consensus 84 -~~~i~~~l~~---~~~~~Gi~v~~ 104 (124)
T cd03400 84 -ESAIKKELIE---EFVGDGLILEE 104 (124)
T ss_pred -HHHHHHHHHH---HhccCCeEEEE
Confidence 2223333333 34457988876
No 62
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=22.77 E-value=85 Score=24.54 Aligned_cols=63 Identities=32% Similarity=0.320 Sum_probs=38.1
Q ss_pred eEEEEecCcc-cHHHHHHcCCCee-c--chHHHHHHHccCc--cccEEEECccchHHHHhhccccCCCC
Q psy15220 198 IYIAAFVPKE-KYEQAKIAGADIV-G--MEDLAQKIKSNEV--SCDLVIASPESMHIVSSLGKILGPKG 260 (289)
Q Consensus 198 ~kI~Vfa~~~-~~~~Ak~aGa~~v-G--~~eLi~~Ik~~~~--~~d~~iat~d~m~~l~~lg~iLGprG 260 (289)
.+|.+.+..+ ..+.|++.||+.+ . .+++.+++++... .+|.+|=....-..+...-..|.|.|
T Consensus 15 ~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G 83 (130)
T PF00107_consen 15 AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLLRPGG 83 (130)
T ss_dssp SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHEEEEE
T ss_pred CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHHHHhccCC
Confidence 4566665554 6889999999932 2 3347888887654 58988755553333333233444443
Done!