Query psy15220
Match_columns 289
No_of_seqs 255 out of 1512
Neff 6.1
Searched_HMMs 29240
Date Sat Aug 17 00:18:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mms_A Protein (ribosomal prot 100.0 8.2E-59 2.8E-63 388.6 14.5 140 2-142 1-140 (140)
2 2ftc_G L11MT, MRP-L11, 39S rib 100.0 2.4E-57 8.1E-62 381.7 15.2 138 5-142 4-145 (145)
3 1vq8_I 50S ribosomal protein L 100.0 1.2E-58 4E-63 395.9 6.9 154 7-167 3-156 (162)
4 3j21_H 50S ribosomal protein L 100.0 1.4E-58 4.9E-63 396.0 4.0 157 1-167 1-158 (164)
5 3egv_B 50S ribosomal protein L 100.0 8.8E-58 3E-62 384.5 7.8 143 3-146 1-143 (146)
6 3bbo_K Ribosomal protein L11; 100.0 3.3E-56 1.1E-60 394.3 12.6 146 1-147 72-217 (224)
7 3r8s_I 50S ribosomal protein L 100.0 2.5E-59 8.6E-64 391.8 -12.1 141 2-142 1-141 (141)
8 2zkr_i 60S ribosomal protein L 100.0 3.6E-56 1.2E-60 381.5 5.5 152 4-164 8-161 (165)
9 3iz5_J 60S ribosomal protein L 100.0 4.2E-55 1.4E-59 375.0 10.7 151 5-164 9-162 (166)
10 3u42_A 50S ribosomal protein L 100.0 9.8E-48 3.3E-52 346.4 12.2 150 139-288 14-164 (229)
11 3qoy_A 50S ribosomal protein L 100.0 1.3E-45 4.3E-50 334.8 12.8 149 140-288 15-167 (242)
12 2wwq_5 50S ribosomal protein L 100.0 1.4E-44 4.7E-49 326.9 13.2 150 140-289 15-164 (234)
13 3bbo_D Ribosomal protein L1; l 100.0 7.2E-43 2.4E-47 328.7 10.8 150 139-288 128-277 (352)
14 3j21_A 50S ribosomal protein L 100.0 2E-38 7E-43 283.7 6.7 140 147-288 7-155 (216)
15 2zkr_5 60S ribosomal protein L 100.0 9.3E-38 3.2E-42 278.7 7.2 140 146-289 4-153 (212)
16 1i2a_A 50S ribosomal protein L 100.0 8.4E-37 2.9E-41 273.7 8.9 137 147-288 5-152 (219)
17 1mzp_A 50S ribosomal protein L 100.0 2.6E-35 8.8E-40 263.8 9.2 136 148-288 8-157 (217)
18 2ftc_A Mitochondrial ribosomal 100.0 2.4E-32 8.2E-37 239.8 12.8 117 167-288 3-121 (189)
19 3iz5_A 60S ribosomal protein L 100.0 7.9E-35 2.7E-39 260.4 -5.2 139 146-288 7-156 (216)
20 1wib_A 60S ribosomal protein L 100.0 5.6E-33 1.9E-37 216.3 3.6 79 4-85 14-92 (92)
21 3cjs_B 50S ribosomal protein L 100.0 6.1E-32 2.1E-36 202.0 7.6 72 2-74 1-72 (72)
22 1hc8_A Ribosomal protein L11; 100.0 1.4E-31 4.7E-36 202.3 5.4 76 67-142 1-76 (76)
23 3o58_A L10A, 60S ribosomal pro 100.0 4.2E-34 1.4E-38 255.9 -13.5 126 159-288 24-157 (217)
24 1qa6_A Ribosomal protein L11; 99.9 6.4E-28 2.2E-32 178.0 5.3 67 72-138 1-67 (67)
25 2ov7_A 50S ribosomal protein L 99.1 3.1E-11 1.1E-15 100.4 5.0 55 139-193 13-67 (137)
26 3iz5_A 60S ribosomal protein L 71.8 2.8 9.7E-05 36.5 3.6 26 247-273 113-139 (216)
27 3r2c_J Protein NUSE, 30S ribos 45.2 8 0.00027 28.8 1.4 33 111-143 7-39 (83)
28 3d3c_J 30S ribosomal protein S 44.6 11 0.00038 28.3 2.1 33 111-143 12-44 (87)
29 3o58_A L10A, 60S ribosomal pro 36.5 5.2 0.00018 34.9 -1.0 22 250-272 118-139 (217)
30 3r8s_I 50S ribosomal protein L 34.7 13 0.00045 30.4 1.2 31 251-285 22-52 (141)
31 2k6g_A Replication factor C su 33.6 39 0.0013 26.0 3.8 38 196-233 69-109 (109)
32 1nsj_A PRAI, phosphoribosyl an 33.4 12 0.00043 32.0 1.0 27 197-223 3-29 (205)
33 1v5x_A PRA isomerase, phosphor 33.4 13 0.00044 32.0 1.0 27 197-223 2-28 (203)
34 2k87_A Non-structural protein 29.5 52 0.0018 25.9 3.8 35 36-71 30-64 (116)
35 2vn8_A Reticulon-4-interacting 28.2 1.1E+02 0.0037 27.7 6.5 62 199-261 210-275 (375)
36 3nbm_A PTS system, lactose-spe 28.1 27 0.00094 26.8 2.0 62 195-260 4-78 (108)
37 3fok_A Uncharacterized protein 27.6 1E+02 0.0035 28.3 6.1 78 200-279 44-139 (307)
38 2qai_A V-type ATP synthase sub 26.3 67 0.0023 24.9 4.0 86 198-285 1-100 (111)
39 2l2q_A PTS system, cellobiose- 24.4 94 0.0032 23.3 4.5 51 197-251 4-67 (109)
40 4aaj_A N-(5'-phosphoribosyl)an 22.8 27 0.00094 30.4 1.2 31 190-221 15-45 (228)
41 2d00_A V-type ATP synthase sub 21.6 58 0.002 25.0 2.8 89 197-286 3-107 (109)
No 1
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L
Probab=100.00 E-value=8.2e-59 Score=388.56 Aligned_cols=140 Identities=59% Similarity=0.909 Sum_probs=131.9
Q ss_pred ccceeEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHHH
Q psy15220 2 VKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIK 81 (289)
Q Consensus 2 ~k~~~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ 81 (289)
||++.++|+|+++||+|+|+|||||+|||+|||+|+||++||++|++|+ |++|||+||||+||||+|++++||+||||+
T Consensus 1 ~k~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~fck~fN~~T~~~~-G~~ipV~itv~~drsf~f~vk~Ppas~Ll~ 79 (140)
T 1mms_A 1 AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKA-GMILPVVITVYEDKSFTFIIKTPPASFLLK 79 (140)
T ss_dssp ------CEEEEEETTCCCCTTTTTHHHHTTTCCHHHHHHHHHHHTTTSC-SSEEEEEEEECTTSCEEEEECCCCHHHHHH
T ss_pred CCceEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHhhhcC-CCeEEEEEEEcCCCeEEEEEcCCCHHHHHH
Confidence 5788999999999999999999999999999999999999999999995 999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceeccc
Q psy15220 82 KAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDK 142 (289)
Q Consensus 82 ka~g~~~g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~ 142 (289)
||+|+++||++|+++|+|+||++||||||+.|++|+++.+|+++||+|+||||||||+|++
T Consensus 80 ka~g~~~gs~~p~k~~vG~it~~qi~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g 140 (140)
T 1mms_A 80 KAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD 140 (140)
T ss_dssp HHHTCSSCCSSTTTSCCEEECHHHHHHHHHHHGGGCCCSSHHHHHHHHHHHHTTTTEEEC-
T ss_pred HHhCCCCCCCCCCCeEeeeEcHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHcCeeEeeC
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 2
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G
Probab=100.00 E-value=2.4e-57 Score=381.72 Aligned_cols=138 Identities=42% Similarity=0.721 Sum_probs=134.7
Q ss_pred eeEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHHHHHh
Q psy15220 5 ITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIKKAA 84 (289)
Q Consensus 5 ~~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ka~ 84 (289)
+.++|+|+++||+|+|+|||||+|||+|||+|+|||+||++|++|++|++|||+||||+||||+|++++||+||||+||+
T Consensus 4 ~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~fck~fN~~T~~~~~G~~ipV~Itv~~drsf~f~vk~Ppas~Ll~kaa 83 (145)
T 2ftc_G 4 VGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAA 83 (145)
T ss_pred eEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHHhhhcCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceeecccHHHHHHHHHhhhhc--cch--hhHHHHHHHhhhcccccceeccc
Q psy15220 85 GIQKGSAKPHSDKVGKLTYLQIKEIATIKNVD--LTA--ASISAAMRTIAGSARSMGIIFDK 142 (289)
Q Consensus 85 g~~~g~~~~~~~~~g~it~~~v~eIA~~k~~d--~~~--~~l~~~vk~v~Gta~smGi~V~~ 142 (289)
|+++||++|+++|+|+||++||||||+.|++| +++ .+|+++||+|+||||||||+|++
T Consensus 84 g~~~gs~~p~~~~vG~it~~qv~eIA~~K~~d~~l~a~~~~l~~a~k~I~GTArSmGi~V~~ 145 (145)
T 2ftc_G 84 GIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVK 145 (145)
T ss_pred CCCCCCCCCCCcCcceEcHHHHHHHHHHhCcchhccCccCCHHHHHHHHHHHHhcCeEEEeC
Confidence 99999999999999999999999999999997 899 99999999999999999999974
No 3
>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I* 1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I* 1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I* 1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ...
Probab=100.00 E-value=1.2e-58 Score=395.88 Aligned_cols=154 Identities=31% Similarity=0.583 Sum_probs=69.8
Q ss_pred EEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHHHHHhCC
Q psy15220 7 GFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIKKAAGI 86 (289)
Q Consensus 7 ~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ka~g~ 86 (289)
++|+|+++||+|+|+|||||+|||+|||+|+|||+||++|++|+ |++|||+||||+||||+|++++||+||||+||+|+
T Consensus 3 ~~ikL~v~aG~A~p~PplGPaLG~~Gvni~~fck~fN~~T~~~~-G~~ipV~Itv~~drsf~f~vk~Ppas~Ll~kaagi 81 (162)
T 1vq8_I 3 GTIEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFD-GTEVPVTVKYDDDGSFEIEVGVPPTAELIKDEAGF 81 (162)
T ss_dssp -----------------------------------------------------------------CCCCHHHHHHHTTSC
T ss_pred eEEEEEeecCccCCCCCcccccccCCCCHHHHHHHHHHHHhhcC-CCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHHhCC
Confidence 46999999999999999999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred CCCCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceecccccccchhHHHHHHHHhhccccCCc
Q psy15220 87 QKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDKNKIYSFDSAITLIKEAATAKFDES 166 (289)
Q Consensus 87 ~~g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~k~~ysl~eAi~~ik~~~~gkFdes 166 (289)
++||++|+++|+|+||++||||||+.|++|+++.+|+++||+|+||||||||+|++++|+ +++++++.|.+++.
T Consensus 82 ~kgs~~p~k~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g~~p~------~vi~~I~~g~~~~~ 155 (162)
T 1vq8_I 82 ETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIEGENPR------EFKERIDAGEYDDV 155 (162)
T ss_dssp CSCCSSTTTSCCEEECHHHHHHHHHHTTTTCCCSSHHHHHHHHHHHTTTTTEEEC-------------------------
T ss_pred CCCCCCCCCceeeeeeHHHHHHHHHHHHHhhcccCHHHHHHHHHhhhHhCeEEEeccCHH------HHHHhcChhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988 66777777877764
Q ss_pred e
Q psy15220 167 I 167 (289)
Q Consensus 167 V 167 (289)
+
T Consensus 156 l 156 (162)
T 1vq8_I 156 F 156 (162)
T ss_dssp -
T ss_pred H
Confidence 3
No 4
>3j21_H 50S ribosomal protein L11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.4e-58 Score=396.01 Aligned_cols=157 Identities=35% Similarity=0.589 Sum_probs=130.8
Q ss_pred CccceeEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEE-ecCCeEEEEEeCCChHHH
Q psy15220 1 MVKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITV-FSDKSFTFKKKVTPVTFL 79 (289)
Q Consensus 1 m~k~~~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v-~~drsf~~~v~~Pp~s~l 79 (289)
|+|+ +|+|+++||+|+|+|||||+|||+|||+|+||++||++|++|+ |++|||+||| |+||||+|++++||+|||
T Consensus 1 m~~~---~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~~-G~~IpV~ItV~~~dRsf~f~vk~Ppas~L 76 (164)
T 3j21_H 1 MPKQ---VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKDFA-GMQVPVKIIVDPVTKQFEIEVGVPPTSQL 76 (164)
T ss_dssp CCCS---SSCEEEESSCCCCHHHHHHHCCCSSSCTTHHHHHHHHHHCCSS-CCEEEECBCCCTTTCCCCBCCSSSSSTTH
T ss_pred CCce---EEEEEEecCccCCCCCcchhhcccCCcHHHHHHHHHHHHhhcC-CCeeEEEEEEecCCceEEEEEcCCCHHHH
Confidence 7776 5999999999999999999999999999999999999999998 9999999999 999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceecccccccchhHHHHHHHHhh
Q psy15220 80 IKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDKNKIYSFDSAITLIKEAA 159 (289)
Q Consensus 80 l~ka~g~~~g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~k~~ysl~eAi~~ik~~~ 159 (289)
|+||||+++||++|+++|+|+||++||||||++|++|+++.+|+++||+|+||||||||+|++++|+ +++++++
T Consensus 77 l~Ka~g~~kgs~~p~k~~vG~it~~qi~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g~~p~------~v~~~i~ 150 (164)
T 3j21_H 77 IKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKKDQMLALTLKAAAKEVIGTALSMGVTVEGKDPR------EVQKEID 150 (164)
T ss_dssp HHHHHCCCSCCSSTTTCCSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHCCC----------------------
T ss_pred HHHHhCCCCCCCCCCCceeeeeeHHHHHHHHHHHHhhhcccCHHHHHHHHHHHhhcceEEEeccCHH------HHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 6677777
Q ss_pred ccccCCce
Q psy15220 160 TAKFDESI 167 (289)
Q Consensus 160 ~gkFdesV 167 (289)
.|.+++.+
T Consensus 151 ~G~~~~~l 158 (164)
T 3j21_H 151 EGVYDELF 158 (164)
T ss_dssp --------
T ss_pred cccHHHHH
Confidence 78877654
No 5
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; post-translational modification, multiple methyltransferase; HET: SAH 4MM; 1.75A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A 2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K 2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K 2xtg_K ...
Probab=100.00 E-value=8.8e-58 Score=384.48 Aligned_cols=143 Identities=51% Similarity=0.823 Sum_probs=75.4
Q ss_pred cceeEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHHHH
Q psy15220 3 KKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIKK 82 (289)
Q Consensus 3 k~~~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~k 82 (289)
|++.++|+|+++||+|+|+|||||+|||+|||+|+||++||++|++|+ |++|||+||||+||||+|++++||+||||+|
T Consensus 1 k~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~~-G~~ipV~itv~~drsf~~~~~~Ppas~Ll~K 79 (146)
T 3egv_B 1 KKVVAVVKLQLPAGAATPAPPVGPALGQHGANIMEFVKAFNAATANMG-DAIVPVEITIYADRSFTFVTKTPPASYLIRK 79 (146)
T ss_dssp CCEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHTTTST-TCEEEEEEEEETTSCEEEEECCCCHHHHC--
T ss_pred CceEEEEEEEEecccccCCCCcchhhcccCCCHHHHHHHHHHHhcccC-CCEeeEEEEEeCCCeEEEEEeCCCHHHHHHH
Confidence 678999999999999999999999999999999999999999999977 9999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceeccccccc
Q psy15220 83 AAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDKNKIY 146 (289)
Q Consensus 83 a~g~~~g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~k~~y 146 (289)
|+|+++|+++|+++|+|+||++||||||++|++|+++.+|++++|+|+||||||||+|++.+++
T Consensus 80 a~g~~~gs~~p~~~~vG~it~~qi~eIA~~K~~d~~a~~l~~a~k~I~GTA~SmGi~V~g~~~~ 143 (146)
T 3egv_B 80 AAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARSMGVEVVGAPEV 143 (146)
T ss_dssp ----------------------------------------------------------------
T ss_pred hhCCCCCCCCCCCeeeeeecHHHHHHHHHHHhhhhcccCHHHHHHHhHhhhhcCeEEEECCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999998875
No 6
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=3.3e-56 Score=394.33 Aligned_cols=146 Identities=52% Similarity=0.809 Sum_probs=137.7
Q ss_pred CccceeEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHH
Q psy15220 1 MVKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLI 80 (289)
Q Consensus 1 m~k~~~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll 80 (289)
|||++.++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++|++|+ |++|||+||||+||+|+|++++||+||||
T Consensus 72 ~akkv~~~IkL~v~aGkA~PaPPlGPaLG~~GVNim~FcK~fN~~T~d~~-Gl~IPV~ITV~~DRsf~f~vktPpaS~LL 150 (224)
T 3bbo_K 72 KAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKP-GFVIPVEITVFDDKSFTFILKTPPASVLL 150 (224)
T ss_dssp CCCCCSSEEEECCBTTBCCCSTTTTTTTTTTSSCTTSSHHHHHHHGGGSC-SSBCCEEEEECSSSCEEEEECCCCTTHHH
T ss_pred CccceEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHhcccC-CCeEEEEEEEccCCeEEEEecCCCHHHHH
Confidence 36789999999999999999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceecccccccc
Q psy15220 81 KKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDKNKIYS 147 (289)
Q Consensus 81 ~ka~g~~~g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~k~~ys 147 (289)
+||||+++||++|+++++|+||++||||||++|++|+++.+|+++||+|+||||||||+|++..+..
T Consensus 151 kKAagi~kGs~kp~~~~vG~IT~~qV~eIAk~K~~dl~a~~Le~avK~IlGTArSMGi~V~g~~p~~ 217 (224)
T 3bbo_K 151 LKASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILVK 217 (224)
T ss_dssp HHHHTCSSCCSSTTTSCCEEECHHHHHHHHHHTCTTSCCSSHHHHHHHHHHHHTTTTEEEC------
T ss_pred HHHhCCCCCCCCCCCceeeeecHHHHHHHHHHHHhhhcCcCHHHHHHHHHHHHHhCeeEEeCCCCCh
Confidence 9999999999999999999999999999999999999999999999999999999999999987653
No 7
>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I* 2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ...
Probab=100.00 E-value=2.5e-59 Score=391.82 Aligned_cols=141 Identities=58% Similarity=0.986 Sum_probs=139.0
Q ss_pred ccceeEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHHH
Q psy15220 2 VKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIK 81 (289)
Q Consensus 2 ~k~~~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ 81 (289)
||++.++|+|+++||+|+|+|||||+|||+|||+|+||++||++|++|++|++|||+||||+||||+|++++||+||||+
T Consensus 1 akk~~~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~k~G~~ipV~itv~~drsf~f~vk~Ppas~Ll~ 80 (141)
T 3r8s_I 1 AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLK 80 (141)
T ss_dssp CCCCSCCCCCCSCSSSSSCTTTTCTTSSSSSCCSSSTTTTGGGTHHHHCSCSCCCBCCCCSSSSSCCCCBCCCCSSTTTT
T ss_pred CceEEEEEEEEEecCccCCCCCcchhhccCCCCHHHHHHHHHHHHhcccCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceeccc
Q psy15220 82 KAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDK 142 (289)
Q Consensus 82 ka~g~~~g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~ 142 (289)
||+|+++||++|+++|+|+||++||||||+.|++|+++.+|++++|+|+||||||||+|++
T Consensus 81 ka~g~~~gs~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g 141 (141)
T 3r8s_I 81 KAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED 141 (141)
T ss_dssp SSSSCSSCCSSTTTSCCSCCCSSTTSTTTSCCSSCCSCSCTTTTTTTSTTTSSSSCCCCCC
T ss_pred HHhCCCCCCCCCCCcEeeEecHHHHHHHHHHHHhhhcCcCHHHHHHHHHHhhhcceEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 8
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K
Probab=100.00 E-value=3.6e-56 Score=381.52 Aligned_cols=152 Identities=20% Similarity=0.302 Sum_probs=70.7
Q ss_pred ceeEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHHHHH
Q psy15220 4 KITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIKKA 83 (289)
Q Consensus 4 ~~~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ka 83 (289)
.+.++|+|+++||+|+|+|||||+|||+|||+|+|||+||++|++|+ |++|||+||| .||||+|++ +||+||||+||
T Consensus 8 ~~~~~ikL~v~aG~A~p~PplGPaLG~~Gvni~~fck~fN~~T~~~~-G~~ipV~Itv-~drsf~f~v-tPpas~Ll~ka 84 (165)
T 2zkr_i 8 NEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWK-GLRITVKLTI-QNRQAQIEV-VPSASALIIKA 84 (165)
T ss_dssp -----------------------------------------------------------------CCC-CCCHHHHHHHH
T ss_pred CeeEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHHhhcC-CCeEEEEEEE-cCCeeeEEE-CCCHHHHHHHH
Confidence 56789999999999999999999999999999999999999999997 9999999999 899999999 99999999999
Q ss_pred hCCCCCCCC--CCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceecccccccchhHHHHHHHHhhcc
Q psy15220 84 AGIQKGSAK--PHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDKNKIYSFDSAITLIKEAATA 161 (289)
Q Consensus 84 ~g~~~g~~~--~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~k~~ysl~eAi~~ik~~~~g 161 (289)
||+++||++ |+++|+|+||++||||||+.|++|+++.+|+++||+|+||||||||+|++++|. +++++++.|
T Consensus 85 ag~~~gs~k~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g~~P~------ev~~~I~~G 158 (165)
T 2zkr_i 85 LKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPH------DIIDDINSG 158 (165)
T ss_dssp HTCSSCCSSTTTCSSCSEEECHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHTEEEC--------------------
T ss_pred hCCCCCCcccccCceEEeeEeHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHhCeeEEeCCCHH------HHHHHHhCC
Confidence 999999965 899999999999999999999999999999999999999999999999999988 556666666
Q ss_pred ccC
Q psy15220 162 KFD 164 (289)
Q Consensus 162 kFd 164 (289)
.++
T Consensus 159 ~~~ 161 (165)
T 2zkr_i 159 AVE 161 (165)
T ss_dssp ---
T ss_pred Cee
Confidence 654
No 9
>3iz5_J 60S ribosomal protein L12 (L11P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_J
Probab=100.00 E-value=4.2e-55 Score=374.96 Aligned_cols=151 Identities=19% Similarity=0.281 Sum_probs=122.7
Q ss_pred eeEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhc-CCcCCCceeEEEEEecCCeEEEEEeCCChHHHHHHH
Q psy15220 5 ITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQ-GIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIKKA 83 (289)
Q Consensus 5 ~~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~-~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ka 83 (289)
..++|+|+++||+|+|+|||||+|||+|||+|+||++||++|+ +|+ |++|||+||| .||||+|++ +||+||||+||
T Consensus 9 ~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~~~-G~~IpV~itV-~dRsf~f~v-~Ppas~Ll~Ka 85 (166)
T 3iz5_J 9 QVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWK-GLRVTVKLTV-QNRQAKVSV-VPSAAALVIKA 85 (166)
T ss_dssp ---CEEEEECTTCCCCHHHHSTTCCTTTSCSSSHHHHHHHHHCSSCS-CSCEEEEEEE-ETTEEEEEC-TTTTHHHHHHH
T ss_pred ceEEEEEEEecCcccCCCCcchhhccCCCCHHHHHHHHHHHhcccCC-CCeEeEEEEE-cCCeEEEEE-cCcHHHHHHHh
Confidence 4578999999999999999999999999999999999999999 977 9999999999 699999999 99999999999
Q ss_pred hCCCCCCCCCCC--ceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceecccccccchhHHHHHHHHhhcc
Q psy15220 84 AGIQKGSAKPHS--DKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDKNKIYSFDSAITLIKEAATA 161 (289)
Q Consensus 84 ~g~~~g~~~~~~--~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~k~~ysl~eAi~~ik~~~~g 161 (289)
||+++|+++|++ +|+|+||++||||||++|++|+++.+|+++||+|+||||||||+|++++|+ +++++++.|
T Consensus 86 ~g~~~gs~~~~k~i~~vG~it~~qi~eIA~~K~~dl~a~~l~~avk~IlGTArSmGi~V~g~~p~------~v~~~i~~G 159 (166)
T 3iz5_J 86 LKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNRSMAKEMAGTVKEILGTCVSVGCTVDGKDPK------DLQQEISDG 159 (166)
T ss_dssp HTCCSCCSSTTTSCSSCCCCCHHHHHHHHHHHTTTSCCSCHHHHHHHHHHHSCC--------------------------
T ss_pred cCCCCCCCCCCCccceeeEEeHHHHHHHHHHHHhhhcccCHHHHHHHhHheeeeeeEEEecCCHH------HHHHHHhCC
Confidence 999999999988 579999999999999999999999999999999999999999999999999 555666656
Q ss_pred ccC
Q psy15220 162 KFD 164 (289)
Q Consensus 162 kFd 164 (289)
.++
T Consensus 160 ~~~ 162 (166)
T 3iz5_J 160 EVE 162 (166)
T ss_dssp ---
T ss_pred CEe
Confidence 544
No 10
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=100.00 E-value=9.8e-48 Score=346.41 Aligned_cols=150 Identities=45% Similarity=0.700 Sum_probs=146.3
Q ss_pred ecccccccchhHHHHHHHHhhccccCCceeEEEEEEeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCC
Q psy15220 139 IFDKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGAD 218 (289)
Q Consensus 139 ~V~~k~~ysl~eAi~~ik~~~~gkFdesVe~~i~l~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~ 218 (289)
.|+....|+++||++++|+.+.++|+|+||++|+|++|+++++++|||+|.|||++|++.||||||+++.+++|++|||+
T Consensus 14 ~~d~~k~y~~~eAi~~lk~~~~~kF~etvel~i~L~vd~~k~dq~vrg~v~LP~g~gk~~kV~Vfa~~~~~~eAk~aGAd 93 (229)
T 3u42_A 14 KVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGAD 93 (229)
T ss_dssp SSCTTCCBCHHHHHHHHHHHCCSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHHHHHHTTCS
T ss_pred ccCccCCCCHHHHHHHHHHhCCCCCCccEEEEEEEccCCCCCCCceeEEEECCCCCCCceEEEEecChHhHHHHHhcCCc
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecchHHHHHHHccCccccEEEECccchHHH-HhhccccCCCCCCCCCCCCCCCccHHHHHHHHhccceee
Q psy15220 219 IVGMEDLAQKIKSNEVSCDLVIASPESMHIV-SSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRS 288 (289)
Q Consensus 219 ~vG~~eLi~~Ik~~~~~~d~~iat~d~m~~l-~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~ 288 (289)
+||++||+++|++||++||+||||||||++| +.|||+|||||||||||+|||++|+.++|+++|+|+++|
T Consensus 94 ~vG~~dLi~kIk~g~~~fD~~iAtpd~m~~vg~~LG~iLGPrGlMPnpk~GTvt~dv~~~v~~~K~g~v~~ 164 (229)
T 3u42_A 94 YVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEF 164 (229)
T ss_dssp EEECTHHHHHHHTTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGTCBSSCHHHHHHHHHTTEEEE
T ss_pred eeCcHHHHHHHhcCCccccEEEEchHHHHHHHHhhccccccccccccCCCCCCCCCHHHHHHHHhCceEEE
Confidence 9999999999999999999999999999999 589999999999999999999999999999999999987
No 11
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=100.00 E-value=1.3e-45 Score=334.83 Aligned_cols=149 Identities=43% Similarity=0.729 Sum_probs=144.9
Q ss_pred cccccccchhHHHHHHHHhhcc---ccCCceeEEEEEEeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcC
Q psy15220 140 FDKNKIYSFDSAITLIKEAATA---KFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAG 216 (289)
Q Consensus 140 V~~k~~ysl~eAi~~ik~~~~g---kFdesVe~~i~l~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aG 216 (289)
|+....|++.||++++++.+.. +|+|+||++|+|++|++|++++|||+|.|||+++++.||||||+++++++|+++|
T Consensus 15 ~~~~~~y~l~eAi~~~k~~~~~~~rkF~etVel~i~L~vDp~k~d~~vrg~V~LPh~~gk~~kV~Vfa~~~~~~eAk~aG 94 (242)
T 3qoy_A 15 VDRNKRYTLEEAVDLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEEAG 94 (242)
T ss_dssp SCTTCCBCHHHHHHHHHHHHHHHCCSSCCEEEEEEEESCCTTSGGGCCEEEEECSCCCSSCCCEEEECCHHHHHHHHHTT
T ss_pred ccccCccCHHHHHHHHHhhcccccCCCCCcEEEEEEeccCCCCCCCccceEecCCCCCCCCcEEEEEcCHHHHHHHHHcC
Confidence 5677899999999999999877 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecchHHHHHH-HccCccccEEEECccchHHHHhhccccCCCCCCCCCCCCCCCccHHHHHHHHhccceee
Q psy15220 217 ADIVGMEDLAQKI-KSNEVSCDLVIASPESMHIVSSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRS 288 (289)
Q Consensus 217 a~~vG~~eLi~~I-k~~~~~~d~~iat~d~m~~l~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~ 288 (289)
|++||++||+++| ++||.+||+|||||||||+|.+|||+||||||||||++|||++|+.++|+++|+|+++|
T Consensus 95 ad~vg~~dLi~ki~k~g~~~fD~~iAtpd~m~~l~~LGriLGPrGlmP~pk~gTvt~dv~~~V~~~k~G~v~f 167 (242)
T 3qoy_A 95 ADYVGGDELINKILKEEWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEF 167 (242)
T ss_dssp CSEEESHHHHHHHHHHTCCCCSEEEECTTTHHHHGGGHHHHGGGTCSCCGGGTCBCSCHHHHHHHHHTTEEEE
T ss_pred CCEECcHHHHHHHHhCCCccCCEEEECHHHHHHHHHHhHHhccccCCCcccCCccchhHHHHHHHHhcCcEEE
Confidence 9999999999999 89999999999999999999889999999999999999999999999999999999987
No 12
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=1.4e-44 Score=326.91 Aligned_cols=150 Identities=50% Similarity=0.822 Sum_probs=145.6
Q ss_pred cccccccchhHHHHHHHHhhccccCCceeEEEEEEeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCCe
Q psy15220 140 FDKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGADI 219 (289)
Q Consensus 140 V~~k~~ysl~eAi~~ik~~~~gkFdesVe~~i~l~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~ 219 (289)
|+.+..|+++||++++++.+.++|+|+||++|+|++|+++.++++||+|.|||+++++.+|||||+++++++|+++||++
T Consensus 15 ~~~~~~y~~~eAv~~lk~~~~~kF~etvel~i~L~vdp~k~dq~vrg~V~LPh~~~k~~rV~Vfa~~~~~~~Ak~aGad~ 94 (234)
T 2wwq_5 15 VDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAEL 94 (234)
T ss_dssp SCCSSEECHHHHHHHHHHTCCCSSCCEEEEEEEECSCCCSSTTSCCEEEECSSCCSSCCCEEEECSSSCHHHHHHHTCSE
T ss_pred ccccCccCHHHHHHHHHHhccCCCCceEEEEEEECCCCcccCcccceEEeCCCCCCCCcEEEEEcCchhHHHHHHcCCCE
Confidence 57788999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecchHHHHHHHccCccccEEEECccchHHHHhhccccCCCCCCCCCCCCCCCccHHHHHHHHhccceeeC
Q psy15220 220 VGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRST 289 (289)
Q Consensus 220 vG~~eLi~~Ik~~~~~~d~~iat~d~m~~l~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~~ 289 (289)
+|++||+++|++||.+||+||||||||++|.+|||+||||||||||++|||+.|+.++|+++|+|+++|.
T Consensus 95 vg~edLi~kik~~~~~fD~~iAtp~~m~~l~~LGkiLgprGlmP~pk~gTvt~dv~~~V~~~k~g~v~~r 164 (234)
T 2wwq_5 95 VGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYR 164 (234)
T ss_dssp ECSHHHHHHHHHTCCCSSEEEECHHHHHHTTSSCSCCCSSCCSCCTTTTCBCSCSHHHHHHHHHHEEEEC
T ss_pred EcHHHHHHHHHcCcccCCEEEECHHHHHHHHHHhhhhccCCCCCCccCCCccccHHHHHHHHHcCeeEEE
Confidence 9999999999999999999999999999997799999999999999999999999999999999998873
No 13
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=7.2e-43 Score=328.66 Aligned_cols=150 Identities=37% Similarity=0.627 Sum_probs=145.9
Q ss_pred ecccccccchhHHHHHHHHhhccccCCceeEEEEEEeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCC
Q psy15220 139 IFDKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGAD 218 (289)
Q Consensus 139 ~V~~k~~ysl~eAi~~ik~~~~gkFdesVe~~i~l~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~ 218 (289)
.|+....|++.||++++++...++|+|+||++|+|++|+++.++++||+|.|||+++++.+|||||+++++++|+++||+
T Consensus 128 ~~d~~~~Y~l~EAi~llK~~~~~KFdETVEl~I~L~vDpkk~dq~vRGtV~LPhgtgk~~kVcVfa~ge~~eeAk~AGAd 207 (352)
T 3bbo_D 128 LREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGAD 207 (352)
T ss_dssp SCCSSSCCCTTTTHHHHSTTCCSSSCCEECCEEEECSCTTSSTTCCEEEECCTTTSSSSSCEEEECCTTTTHHHHTTTCS
T ss_pred cccccCCCCHHHHHHHHHhccccCCCceEEEEEEeCCCCcccccccceeecCCCCCCCccEEEEEeCchhHHHHHHcCCC
Confidence 46778899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eecchHHHHHHHccCccccEEEECccchHHHHhhccccCCCCCCCCCCCCCCCccHHHHHHHHhccceee
Q psy15220 219 IVGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRS 288 (289)
Q Consensus 219 ~vG~~eLi~~Ik~~~~~~d~~iat~d~m~~l~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~ 288 (289)
++|++||+++|++||.+||+||||||||++|.+|||+||||||||||++|||+.|+.++|+++|+|+++|
T Consensus 208 vVG~edLikkIKkg~~dFD~fIAtpdmM~~lgrLGkiLGPRGlMPnPk~GTVt~Dva~aV~e~K~G~v~f 277 (352)
T 3bbo_D 208 IVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEF 277 (352)
T ss_dssp EEECTTTHHHHTTTCCCCSEEEECSSSHHHHGGGGGTTTTTTCSCCTTTTCBSSCHHHHHTTTTTCCEEE
T ss_pred ccCHHHHHHHHHhchhhcCEEEECHHHHHHHHhhcccccccCCCCCCcCCcccccHHHHHHHHHcCeeEE
Confidence 9999999999999999999999999999999779999999999999999999999999999999999887
No 14
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2e-38 Score=283.66 Aligned_cols=140 Identities=26% Similarity=0.452 Sum_probs=129.6
Q ss_pred chhHHHHHHHHhh-ccccCCceeEEEEEE-eeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCCeecchH
Q psy15220 147 SFDSAITLIKEAA-TAKFDESIDISIHLN-VNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGADIVGMED 224 (289)
Q Consensus 147 sl~eAi~~ik~~~-~gkFdesVe~~i~l~-vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~vG~~e 224 (289)
++.||++.+++.. .++|+|+||++|+|+ +|++++++++||+|.|||+++++.+|||||+++.+++|+++||+++|.+|
T Consensus 7 ~~~eav~~~~~~~~~~kF~etvel~i~L~~~dp~k~d~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~Ak~aGad~vg~e~ 86 (216)
T 3j21_A 7 KIVKAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGLDVISSAE 86 (216)
T ss_dssp SCCCCTTTTCCCCCCSSSCCEEEEEEEESSCCSSSGGGSCCEEEECSSCCSSCCCEEECCCSHHHHHHHHHTCCCCCTTH
T ss_pred HHHHHHHHHHHhCcccCCCceEEEEEEECCCCCCCcCceeeEEEeCCCCCCCCcEEEEECCHHHHHHHHhcCCCccCHHH
Confidence 5778899998887 589999999999995 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHH------HccCccccEEEECccchHHHHh-hccccCCCCCCCCCCCCCCCccHHHHHHHHhccceee
Q psy15220 225 LAQKI------KSNEVSCDLVIASPESMHIVSS-LGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRS 288 (289)
Q Consensus 225 Li~~I------k~~~~~~d~~iat~d~m~~l~~-lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~ 288 (289)
|.+.. ++++.+||+|||||+||+.|.+ |||+||||||||+|++||+ +|+.++|+++++ +++|
T Consensus 87 L~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~k~LGk~LgprgkmP~pk~gtv-~dv~~~v~~~k~-~v~~ 155 (216)
T 3j21_A 87 LEEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTL-TDLTPIVEKLKK-TVRI 155 (216)
T ss_dssp HHHHHHCCCSSSCCSSSCSEEEBCGGGHHHHHHHHHHHHTTSSSSCCTTTTCB-CSHHHHHHHHTC-EEEE
T ss_pred HHHHhcCHHHHhhhhhhCCEEEeCHHHHHHHHHHHHHHhccCCccCCCcCCcH-HHHHHHHHHHHh-hcee
Confidence 94432 3567899999999999999965 9999999999999999999 999999999998 8876
No 15
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=9.3e-38 Score=278.68 Aligned_cols=140 Identities=25% Similarity=0.492 Sum_probs=133.0
Q ss_pred cchhHHHH-HHHHhhccccCCceeEEEEE-EeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCCeecch
Q psy15220 146 YSFDSAIT-LIKEAATAKFDESIDISIHL-NVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGADIVGME 223 (289)
Q Consensus 146 ysl~eAi~-~ik~~~~gkFdesVe~~i~l-~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~vG~~ 223 (289)
-.+.||++ ++++.+.++|+|+||++|+| ++|+++.++++||+|.|||+++++.+|||||+++.+++|+++||+++|.+
T Consensus 4 ~~l~eAv~~llk~~~~~kf~etvel~i~Lk~~dp~k~d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~~vg~~ 83 (212)
T 2zkr_5 4 QEIENAVSRALEDAPERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVFAEGETALRAEEVADDVLDED 83 (212)
T ss_dssp TTHHHHHHHHHHTSCCCSSCCEEEEEEEESSCCTTTTTTCCCCEEECSSCCSSCCCEEEECCHHHHHHHHHHTSCCCCHH
T ss_pred HHHHHHHHHHHHhcccCCCCceEEEEEEeCCCCCCcccccCceEEECCCCCCCCcEEEEEcCchhHHHHHhcCCCEeCHH
Confidence 35789999 99999999999999999999 99999889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc------cC-ccccEEEECccchHHHHh-hccccCCCCCCCCCCCCCCCccHHHHHHHHhccceeeC
Q psy15220 224 DLAQKIKS------NE-VSCDLVIASPESMHIVSS-LGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRST 289 (289)
Q Consensus 224 eLi~~Ik~------~~-~~~d~~iat~d~m~~l~~-lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~~ 289 (289)
|| ++|++ ++ .+||+|||||+||++|.+ |||+||||||||+|++| +.|+.++|+++++| ++|.
T Consensus 84 ~L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LGk~LgprgkmP~pk~g--t~dv~~~i~~~k~~-v~~r 153 (212)
T 2zkr_5 84 EL-EELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPLDP--DDDVVEVIERMKNT-VQLR 153 (212)
T ss_dssp HH-HHHTTCHHHHHHHHHHCSEEEECTTTHHHHHHHTHHHHHHHTCCEEECCS--SSCCHHHHHHHHTE-EECC
T ss_pred HH-HHHHhhHHhhhcccccCCEEEECHHHHHHHHHHHhhhccccCCcCcccCC--CcCHHHHHHHHHcc-eEEE
Confidence 99 99986 77 899999999999999976 99999999999999999 89999999999999 8873
No 16
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=100.00 E-value=8.4e-37 Score=273.71 Aligned_cols=137 Identities=23% Similarity=0.403 Sum_probs=129.0
Q ss_pred chhHHHH-HHHHhhccccCCceeEEEEE-EeeecCCC-ceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCCeecch
Q psy15220 147 SFDSAIT-LIKEAATAKFDESIDISIHL-NVNIKRSD-QIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGADIVGME 223 (289)
Q Consensus 147 sl~eAi~-~ik~~~~gkFdesVe~~i~l-~vd~kk~~-~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~vG~~ 223 (289)
.+.||++ ++++...++|+|+||++|+| ++|++ .+ +++||+|.|||+++++.+|||||+++.+++|+++||+++|.+
T Consensus 5 ~l~eAv~~llk~~~~~kf~etVel~i~LK~~dp~-~d~q~vrg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~~vg~~ 83 (219)
T 1i2a_A 5 ALLQAVKEARELAKPRNFTQSFEFIATLKEIDMR-KPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKE 83 (219)
T ss_dssp HHHHHHHHHHHHSCCCSSCCEEEEEEEESSCCTT-SGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTCEEECHH
T ss_pred HHHHHHHHHHHhcccCCCCceEEEEEEecccCCc-ccccccceEEecCCCCCCCcEEEEEcCchhHHHHHHCCCCEEcHH
Confidence 4689999 88988889999999999999 99999 57 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHc------cC-ccccEEEECccchHHHHh-hccccCCCCCCCCCCCCCCCccHHHHHHHHhccceee
Q psy15220 224 DLAQKIKS------NE-VSCDLVIASPESMHIVSS-LGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRS 288 (289)
Q Consensus 224 eLi~~Ik~------~~-~~~d~~iat~d~m~~l~~-lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~ 288 (289)
|| ++|++ ++ .+||+||||||||+.|.+ |||+||||||||+|++| ++|+.++|+++++| ++|
T Consensus 84 ~L-~ki~~~kk~~r~l~~~fD~~lA~~~~m~~l~k~LGk~LgprgkmP~pk~g--t~dv~~~v~~~k~~-v~~ 152 (219)
T 1i2a_A 84 EI-EELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPA--NANIKPLVERLKKT-VVI 152 (219)
T ss_dssp HH-HHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECT--TCCCHHHHHHHHTE-EEE
T ss_pred HH-HHHHhhhhhhhhchhhCCEEEECHHHHHHHHHHHhhhhcccCCCCcccCC--CccHHHHHHHHhcc-eEE
Confidence 99 88875 55 799999999999999966 99999999999999999 88999999999999 887
No 17
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=100.00 E-value=2.6e-35 Score=263.75 Aligned_cols=136 Identities=24% Similarity=0.375 Sum_probs=124.2
Q ss_pred hhHHHHHHHHh---hccccCCceeEEEEE-EeeecCCC-ceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCC-eec
Q psy15220 148 FDSAITLIKEA---ATAKFDESIDISIHL-NVNIKRSD-QIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGAD-IVG 221 (289)
Q Consensus 148 l~eAi~~ik~~---~~gkFdesVe~~i~l-~vd~kk~~-~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~-~vG 221 (289)
+.+|++.+.+. ..++|+|+||++|+| ++|++ .+ +++||+|.|||+++++.+|||||+++++++|+++||+ ++|
T Consensus 8 l~~Av~~ll~~~~~~~~kf~etvel~i~LK~~dp~-~d~q~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGad~~vg 86 (217)
T 1mzp_A 8 LIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMK-KGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASPKVVIT 86 (217)
T ss_dssp HHHHHHHHHSTTTCCCCSSCCEEEEEEEESSCCGG-GTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTCCSEECC
T ss_pred HHHHHHHHHhhccccccCCCccEEEEEEecCCCCc-ccccccceeecCCCCCCCCcEEEEEcCchhHHHHHhcCCCeeeC
Confidence 45666666543 457999999999999 99999 57 8999999999999999999999999999999999998 999
Q ss_pred chHHHHHHHc------cC-ccccEEEECccchHHHHh-hccccCCCCCCCCCCCCCCCccHHHHHHHHhccceee
Q psy15220 222 MEDLAQKIKS------NE-VSCDLVIASPESMHIVSS-LGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRS 288 (289)
Q Consensus 222 ~~eLi~~Ik~------~~-~~~d~~iat~d~m~~l~~-lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~ 288 (289)
.+|| ++|++ ++ .+||+|||||+||+.|.+ |||+||||||||+|++| +.|+.++|+++++| ++|
T Consensus 87 ~~~L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LG~~LgprgkmP~p~~g--t~dv~~~v~~~k~~-v~~ 157 (217)
T 1mzp_A 87 REEL-QKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPN--TADISEYINRFKRS-VLV 157 (217)
T ss_dssp HHHH-HHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCS--SSCCHHHHHHHHTE-EEE
T ss_pred HHHH-HHHHhhHHhhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCCCcccCC--CccHHHHHHHHhcc-eEE
Confidence 9999 89876 55 799999999999999976 99999999999999999 89999999999999 887
No 18
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.98 E-value=2.4e-32 Score=239.80 Aligned_cols=117 Identities=26% Similarity=0.406 Sum_probs=104.5
Q ss_pred eeEEEEEEeeecCCCceeeeEEEcCCCCCCce-EEEEecCc-ccHHHHHHcCCCeecchHHHHHHHccCccccEEEECcc
Q psy15220 167 IDISIHLNVNIKRSDQIVRGSIVLPFSTGKKI-YIAAFVPK-EKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPE 244 (289)
Q Consensus 167 Ve~~i~l~vd~kk~~~~~rg~v~LP~~~~k~~-kI~Vfa~~-~~~~~Ak~aGa~~vG~~eLi~~Ik~~~~~~d~~iat~d 244 (289)
+|+++.+ ..+|...++||+|.|||++++.. +|||||++ +.+++|++|||+++|+|||+++|++||.+||+||||||
T Consensus 3 ieL~m~l--~~~r~~~~~rg~V~LPhg~~k~~~~V~Vfa~~~~~~~~Ak~aGad~vg~~dLi~ki~~~~~~fD~~iAtp~ 80 (189)
T 2ftc_A 3 LTLDMAL--GKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVPE 80 (189)
T ss_pred EEEEEEe--cCCccCcccceEEECCCCCCCCCCEEEEEeCChhHHHHHHHcCCCCcCHHHHHHHHHcCCccCCEEEECHH
Confidence 4455444 22344666799999999987665 99999999 58999999999999999999999999999999999999
Q ss_pred chHHHHhhccccCCCCCCCCCCCCCCCccHHHHHHHHhccceee
Q psy15220 245 SMHIVSSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRS 288 (289)
Q Consensus 245 ~m~~l~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~ 288 (289)
||++|.+||++|||| ||||++|||++|+.++|+++|+|+ +|
T Consensus 81 ~m~~l~~l~~~Lg~K--mP~pk~gTvt~dv~~~v~~~k~g~-~~ 121 (189)
T 2ftc_A 81 IMPELNRLRKKLNKK--YPKLSRNSIGRDIPKMLELFKNGH-EI 121 (189)
T ss_pred HHHHHHHhhccccCC--CCcccCCCccccHHHHHHHHhcce-EE
Confidence 999999999999976 999999999999999999999997 76
No 19
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=99.97 E-value=7.9e-35 Score=260.41 Aligned_cols=139 Identities=23% Similarity=0.352 Sum_probs=127.6
Q ss_pred cchhHHHHHHHHhh---ccccCCceeEEEEE-EeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCCeec
Q psy15220 146 YSFDSAITLIKEAA---TAKFDESIDISIHL-NVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGADIVG 221 (289)
Q Consensus 146 ysl~eAi~~ik~~~---~gkFdesVe~~i~l-~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~vG 221 (289)
.++.||++.+++.. .++|+|+||++|+| ++|+++ ++++||+|.|||+++++.+|||||+++.+++|+++||+++|
T Consensus 7 ~~l~eav~~~~~~~~~~~~kF~etvel~i~Lk~idp~k-d~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~A~~aGa~~vg 85 (216)
T 3iz5_A 7 DAVKDAITQIVGEAREKKRKFTETVELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMRVCMLGDAQHVDQAEKMGLDYMD 85 (216)
T ss_dssp CSSCEECTTTSSSSTTHHHHCCCSSCCEEEEEEECCCC-SSSTTCCEECCBCSSCCCCCCCEEEECCTHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHhccccccCCCccEEEEEEecccCccc-ccccceeecCCCCCCCCcEEEEEcChHhHHHHHhccCCEeC
Confidence 35677777777665 68999999999999 899986 99999999999999999999999999999999999999999
Q ss_pred chHHHHHHHccC------ccccEEEECccchHHH-HhhccccCCCCCCCCCCCCCCCccHHHHHHHHhccceee
Q psy15220 222 MEDLAQKIKSNE------VSCDLVIASPESMHIV-SSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRS 288 (289)
Q Consensus 222 ~~eLi~~Ik~~~------~~~d~~iat~d~m~~l-~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~ 288 (289)
.+||++++++++ .+||+|||||++|++| +.||+.|||+|+||+|++ +++|+.++|+++++ +++|
T Consensus 86 ~~~L~~~~k~~~~~rkl~~~fD~~lA~~~i~~~l~riLG~~l~p~gk~P~p~~--~t~dv~~~v~~~k~-~v~~ 156 (216)
T 3iz5_A 86 VESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVS--HQESLEAKVNETKA-TVKF 156 (216)
T ss_dssp EECGGGHHHHHHTCCCCSEEEECTTTHHHHHHHHHHHHTTTCSCCTTTTCBCS--CHHHHHHHHHHTBC-CEEE
T ss_pred HHHHHHHhhchHHHHHHHhhCCEEEECHHHHHHHHHHhcccccccCCcCCCcC--CcccHHHHHHHHHh-hhhe
Confidence 999999997766 5999999999999999 568999999999999998 68999999999999 7776
No 20
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1
Probab=99.97 E-value=5.6e-33 Score=216.27 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=76.9
Q ss_pred ceeEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCCChHHHHHHH
Q psy15220 4 KITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVTPVTFLIKKA 83 (289)
Q Consensus 4 ~~~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~Pp~s~ll~ka 83 (289)
++.++|+|+++||+|+|+|||||+|||+|||+|+||++||++|++|+ |++|||+|||| ||+|+|++ +||+|+||+|+
T Consensus 14 ~~~~~ikL~v~aG~A~p~pplgPaLG~~Glni~~f~k~fn~~T~~~k-G~~ipV~itv~-drsf~~~v-~PpaS~Ll~k~ 90 (92)
T 1wib_A 14 NEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWK-GLRITVKLTIQ-NRQAQIEV-VPSASALSGPS 90 (92)
T ss_dssp SSCEEEEEEEETTCCCCSSCSHHHHTTTCSCHHHHHHHHHHHTTTTT-TSEEEEEEEEE-TTEEECCB-CSCCCCCCCCS
T ss_pred CeEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHHhhcC-CCeEEEEEEEe-CCeeEEEE-cCCHHHHHHHh
Confidence 57889999999999999999999999999999999999999999997 99999999999 99999999 99999999998
Q ss_pred hC
Q psy15220 84 AG 85 (289)
Q Consensus 84 ~g 85 (289)
+|
T Consensus 91 ~~ 92 (92)
T 1wib_A 91 SG 92 (92)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 21
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=99.97 E-value=6.1e-32 Score=202.02 Aligned_cols=72 Identities=56% Similarity=0.968 Sum_probs=70.2
Q ss_pred ccceeEEEEEEeecccCCCCCCCCcccCCCCCChHHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEEeCC
Q psy15220 2 VKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKKKVT 74 (289)
Q Consensus 2 ~k~~~~~i~l~v~~G~a~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v~~P 74 (289)
||++.++|+|+++||+|+|+|||||+|||+|||+|+||++||++|++|+ |++|||+|+||+||||+|++++|
T Consensus 1 ~k~~~~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~~-G~~ipV~Itv~~drsf~~~~ktP 72 (72)
T 3cjs_B 1 MKKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMG-DAIVPVEITIYADRSFTFVTKTP 72 (72)
T ss_dssp CCCEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHHGGGC-SCEEEEEEEEETTSCEEEEECCC
T ss_pred CcceEEEEEEEEecCccCCCCCccchhcccCCCHHHHHHHHHHHHhhcC-CCeEeEEEEEeCCCeEEEEEcCC
Confidence 5889999999999999999999999999999999999999999999996 99999999999999999999987
No 22
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=99.97 E-value=1.4e-31 Score=202.26 Aligned_cols=76 Identities=51% Similarity=0.781 Sum_probs=73.4
Q ss_pred EEEEEeCCChHHHHHHHhCCCCCCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccceeccc
Q psy15220 67 FTFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDK 142 (289)
Q Consensus 67 f~~~v~~Pp~s~ll~ka~g~~~g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~ 142 (289)
|+|++++||+||||+||+|+++||++|+++++|+||++||||||+.|++|+++.+|+++||+|+||||||||+|++
T Consensus 1 f~f~~ktPpas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~~ 76 (76)
T 1hc8_A 1 FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVVEN 76 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHTCSCCCSSTTTCCCEEECHHHHHHHHHHSGGGCCCSSHHHHHHHHHHHHHHHTEEEC-
T ss_pred CEEEEcCCCHHHHHHHHhCCCCCCCCCCCcEeeeecHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCeeEeeC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999985
No 23
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=99.96 E-value=4.2e-34 Score=255.91 Aligned_cols=126 Identities=25% Similarity=0.372 Sum_probs=116.7
Q ss_pred hccccCCceeEEEEE-EeeecCCCceeeeEEEcCCCCCCceEEEEecCcccHHHHHHcCCCeecchHHHHHHHcc-----
Q psy15220 159 ATAKFDESIDISIHL-NVNIKRSDQIVRGSIVLPFSTGKKIYIAAFVPKEKYEQAKIAGADIVGMEDLAQKIKSN----- 232 (289)
Q Consensus 159 ~~gkFdesVe~~i~l-~vd~kk~~~~~rg~v~LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~vG~~eLi~~Ik~~----- 232 (289)
..++|+|+||++|+| ++|+++ ++++||+|.|||+++++.+|||||+++.+++|+++||+++|.+||+++++++
T Consensus 24 ~~~kf~etVel~i~Lk~idp~k-d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~Ak~aGa~~vg~~~L~~~~k~~k~~~~ 102 (217)
T 3o58_A 24 KKRNFLETVELQVGLKNYDPQR-DKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKK 102 (217)
T ss_dssp SCCSSCCCCCCCCCSCCSCSSS-SSCCSCCCSCCCCCSSCCCCCCCSSTTSSGGGTTTTCCCCCSTTTTTTSCSSSHHHH
T ss_pred cccCCCccEEEEEEecccCCCC-CCcCCeEEECCCCCCCCcEEEEEcCcHhHHHHHHcCCCEeCHHHHHHHhhchhHhhh
Confidence 356899999999999 999998 9999999999999999999999999999999999999999999999987655
Q ss_pred -CccccEEEECccchHHH-HhhccccCCCCCCCCCCCCCCCccHHHHHHHHhccceee
Q psy15220 233 -EVSCDLVIASPESMHIV-SSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIRS 288 (289)
Q Consensus 233 -~~~~d~~iat~d~m~~l-~~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~~~~ 288 (289)
..+||+||||||||++| +.||+.|||||+||+|++ ++.|+.++|+++++ +++|
T Consensus 103 l~~~fD~~iA~~~im~~l~riLG~~l~p~gk~P~p~~--vt~dv~~~v~~~k~-~v~~ 157 (217)
T 3o58_A 103 LSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVS--HNDDLYGKVTDVRS-TIKF 157 (217)
T ss_dssp HHCSSSCCCCCCCCSSCCSSSSSSTTHHHHCSSCCSC--TTTCSSSGGGGTTS-CCSC
T ss_pred hhhhCCEEEECHHHHHHHHHHhhhhhcccCCcCCCcC--CchhHHHHHHHHhc-eEEE
Confidence 37999999999999999 459999999999999996 99999999999998 6665
No 24
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Probab=99.94 E-value=6.4e-28 Score=178.03 Aligned_cols=67 Identities=54% Similarity=0.780 Sum_probs=66.0
Q ss_pred eCCChHHHHHHHhCCCCCCCCCCCceeecccHHHHHHHHHhhhhccchhhHHHHHHHhhhcccccce
Q psy15220 72 KVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGI 138 (289)
Q Consensus 72 ~~Pp~s~ll~ka~g~~~g~~~~~~~~~g~it~~~v~eIA~~k~~d~~~~~l~~~vk~v~Gta~smGi 138 (289)
++||+||||+||+|+++||++|+++++|+||++||||||+.|++|+++.+|+++||+|+||||||||
T Consensus 1 ktPpas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi 67 (67)
T 1qa6_A 1 KTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGI 67 (67)
T ss_dssp CCSCHHHHHHHHHTCSCCCCTTSSCCCCCCTTTHHHHHHHHHGGGCCCSSHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhCCCCCCCCCCCcccceecHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999997
No 25
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=99.13 E-value=3.1e-11 Score=100.39 Aligned_cols=55 Identities=49% Similarity=0.785 Sum_probs=51.8
Q ss_pred ecccccccchhHHHHHHHHhhccccCCceeEEEEEEeeecCCCceeeeEEEcCCC
Q psy15220 139 IFDKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFS 193 (289)
Q Consensus 139 ~V~~k~~ysl~eAi~~ik~~~~gkFdesVe~~i~l~vd~kk~~~~~rg~v~LP~~ 193 (289)
.|+....|++.||++++++...++|+|+||++|+|++|+++.||++||+|.|||+
T Consensus 13 kv~~~~~y~~~eAi~~~k~~~~~kF~EtVel~i~L~vDprk~dq~vrgtV~LP~g 67 (137)
T 2ov7_A 13 KVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHG 67 (137)
T ss_dssp TSCTTCCBCHHHHHHHHHHTCCSSSCCEEEEEEEESSCTTCSSCCCEEEEECTTS
T ss_pred hcCcccccCHHHHHHHHHhcccCCCCccEEEEEEeCCCCccccceeeEEEEcCCC
Confidence 4566789999999999999999999999999999999999999999999999997
No 26
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=71.84 E-value=2.8 Score=36.54 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=21.9
Q ss_pred HHH-HhhccccCCCCCCCCCCCCCCCcc
Q psy15220 247 HIV-SSLGKILGPKGLMPNIKDGTLNSD 273 (289)
Q Consensus 247 ~~l-~~lg~iLGprGlMP~~k~GTv~~d 273 (289)
|.+ ..|+|+||| ++||+.|..|+..-
T Consensus 113 ~~i~~~l~riLG~-~l~p~gk~P~p~~~ 139 (216)
T 3iz5_A 113 EAIIKQIPRLLGP-GLNKAGKFPTLVSH 139 (216)
T ss_dssp HHHHHHHHHHHTT-TCSCCTTTTCBCSC
T ss_pred HHHHHHHHHHhcc-cccccCCcCCCcCC
Confidence 444 679999999 99999999888764
No 27
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=45.16 E-value=8 Score=28.81 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=28.1
Q ss_pred HhhhhccchhhHHHHHHHhhhcccccceecccc
Q psy15220 111 TIKNVDLTAASISAAMRTIAGSARSMGIIFDKN 143 (289)
Q Consensus 111 ~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~k 143 (289)
++++...+...|+..|++++-+|+.-|+.|.|-
T Consensus 7 RI~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~GP 39 (83)
T 3r2c_J 7 RIKLRAYDHRLLDQSVKQIIETVKRTGGVVKGP 39 (83)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHhCCeeeCC
Confidence 345556778999999999999999999999883
No 28
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=44.60 E-value=11 Score=28.27 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=28.5
Q ss_pred HhhhhccchhhHHHHHHHhhhcccccceecccc
Q psy15220 111 TIKNVDLTAASISAAMRTIAGSARSMGIIFDKN 143 (289)
Q Consensus 111 ~~k~~d~~~~~l~~~vk~v~Gta~smGi~V~~k 143 (289)
++++...+...|+..|..++-+|+..|+.|.|-
T Consensus 12 rI~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~GP 44 (87)
T 3d3c_J 12 RIRLKAFDHRLIDQATAEIVETAKRTGAQVRGP 44 (87)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHhCCccCCC
Confidence 455666788999999999999999999999873
No 29
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=36.49 E-value=5.2 Score=34.86 Aligned_cols=22 Identities=32% Similarity=0.270 Sum_probs=17.9
Q ss_pred HhhccccCCCCCCCCCCCCCCCc
Q psy15220 250 SSLGKILGPKGLMPNIKDGTLNS 272 (289)
Q Consensus 250 ~~lg~iLGprGlMP~~k~GTv~~ 272 (289)
..|+|+||| ++||+.|.+++..
T Consensus 118 ~~l~riLG~-~l~p~gk~P~p~~ 139 (217)
T 3o58_A 118 KQVPRLLGP-QLSKAGKFPTPVS 139 (217)
T ss_dssp SCCSSSSSS-TTHHHHCSSCCSC
T ss_pred HHHHHHhhh-hhcccCCcCCCcC
Confidence 346899999 8999999877664
No 30
>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I* 2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ...
Probab=34.68 E-value=13 Score=30.41 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=24.9
Q ss_pred hhccccCCCCCCCCCCCCCCCccHHHHHHHHhccc
Q psy15220 251 SLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQ 285 (289)
Q Consensus 251 ~lg~iLGprGlMP~~k~GTv~~di~~~v~~~k~G~ 285 (289)
.||+.|||+|+ |++. ++.|+.+.-.+|+.|-
T Consensus 22 plgPaLG~~Gv--ni~~--f~k~fN~~T~~~k~G~ 52 (141)
T 3r8s_I 22 PVGPALGQQGV--NIME--FCKAFNAKTDSIEKGL 52 (141)
T ss_dssp TTCTTSSSSSC--CSSS--TTTTGGGTHHHHCSCS
T ss_pred CcchhhccCCC--CHHH--HHHHHHHHHhcccCCC
Confidence 48999999998 4454 7889988888888663
No 31
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=33.63 E-value=39 Score=26.04 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=27.8
Q ss_pred CceEEEEecCc---ccHHHHHHcCCCeecchHHHHHHHccC
Q psy15220 196 KKIYIAAFVPK---EKYEQAKIAGADIVGMEDLAQKIKSNE 233 (289)
Q Consensus 196 k~~kI~Vfa~~---~~~~~Ak~aGa~~vG~~eLi~~Ik~~~ 233 (289)
++...+|.+++ ...+.|++.|..++..+++.+.+..++
T Consensus 69 kkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~~E 109 (109)
T 2k6g_A 69 KKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRNLE 109 (109)
T ss_dssp TTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHHTC
T ss_pred CCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHhCC
Confidence 44455555442 356789999999999999999887653
No 32
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=33.43 E-value=12 Score=32.03 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=23.4
Q ss_pred ceEEEEecCcccHHHHHHcCCCeecch
Q psy15220 197 KIYIAAFVPKEKYEQAKIAGADIVGME 223 (289)
Q Consensus 197 ~~kI~Vfa~~~~~~~Ak~aGa~~vG~~ 223 (289)
..|||=+.+.++++.|.++|||++|--
T Consensus 3 ~vKICGit~~eda~~a~~~GaD~iGfi 29 (205)
T 1nsj_A 3 RVKICGITNLEDALFSVESGADAVGFV 29 (205)
T ss_dssp EEEECCCCSHHHHHHHHHHTCSEEEEE
T ss_pred cEEECCCCcHHHHHHHHHcCCCEEEEE
Confidence 468998888899999999999988853
No 33
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=33.39 E-value=13 Score=31.95 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.3
Q ss_pred ceEEEEecCcccHHHHHHcCCCeecch
Q psy15220 197 KIYIAAFVPKEKYEQAKIAGADIVGME 223 (289)
Q Consensus 197 ~~kI~Vfa~~~~~~~Ak~aGa~~vG~~ 223 (289)
..|||=+.+.++++.|.++|||++|--
T Consensus 2 ~vKICGit~~eda~~a~~~GaD~iGfi 28 (203)
T 1v5x_A 2 RVKICGITRLEDALLAEALGAFALGFV 28 (203)
T ss_dssp EEEECCCCCHHHHHHHHHHTCSEEEEE
T ss_pred cEEEcCCCcHHHHHHHHHcCCCEEEEE
Confidence 368998888899999999999988853
No 34
>2k87_A Non-structural protein 3 of replicase polyprotein; structural genomics, joint center for structural genomics, J protein structure initiative; NMR {Sars coronavirus}
Probab=29.46 E-value=52 Score=25.92 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCcCCCceeEEEEEecCCeEEEEE
Q psy15220 36 MEFCKNFNAQTQGIELGTPIPVIITVFSDKSFTFKK 71 (289)
Q Consensus 36 ~~f~k~fN~~T~~~~~g~~vpv~i~v~~drsf~~~v 71 (289)
.+||++||+.+.-=+++ .+-.+++.++|-+=++..
T Consensus 30 ~~ia~~~N~~lgf~k~~-~~~lk~T~~P~~~GDVVl 64 (116)
T 2k87_A 30 TKFADDLNQMTGFTKPA-SRELSVTFFPDLNGDVVA 64 (116)
T ss_dssp HHHHHHHHHHTTCCSSC-SEEEEEEETTCCCSSEEE
T ss_pred HHHHHHHHHHhCCCCCC-ceEEEEEECCCCCCCEEE
Confidence 48999999999864545 677778888887766665
No 35
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Probab=28.19 E-value=1.1e+02 Score=27.67 Aligned_cols=62 Identities=15% Similarity=0.076 Sum_probs=37.0
Q ss_pred EEEEecCcccHHHHHHcCCCee---cchHHHHHHHccCccccEEEECccch-HHHHhhccccCCCCC
Q psy15220 199 YIAAFVPKEKYEQAKIAGADIV---GMEDLAQKIKSNEVSCDLVIASPESM-HIVSSLGKILGPKGL 261 (289)
Q Consensus 199 kI~Vfa~~~~~~~Ak~aGa~~v---G~~eLi~~Ik~~~~~~d~~iat~d~m-~~l~~lg~iLGprGl 261 (289)
+|.+.+..+..+.|++.||+.+ ..+++.+.+.+. ..+|.+|-+..-- ..+...-+.|.|.|.
T Consensus 210 ~Vi~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~-~g~D~vid~~g~~~~~~~~~~~~l~~~G~ 275 (375)
T 2vn8_A 210 HVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSL-KPFDFILDNVGGSTETWAPDFLKKWSGAT 275 (375)
T ss_dssp EEEEEECGGGHHHHHHTTCSEEEETTSSCHHHHHHTS-CCBSEEEESSCTTHHHHGGGGBCSSSCCE
T ss_pred EEEEEeChHHHHHHHHcCCCEEEECCchHHHHHHhhc-CCCCEEEECCCChhhhhHHHHHhhcCCcE
Confidence 4555666667778888999843 234666667654 3689888665433 222333345555553
No 36
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=28.06 E-value=27 Score=26.85 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=39.7
Q ss_pred CCceEEEEecCcc---------cHHHHHHcCCC--e--ecchHHHHHHHccCccccEEEECccchHHHHhhccccCCCC
Q psy15220 195 GKKIYIAAFVPKE---------KYEQAKIAGAD--I--VGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKILGPKG 260 (289)
Q Consensus 195 ~k~~kI~Vfa~~~---------~~~~Ak~aGa~--~--vG~~eLi~~Ik~~~~~~d~~iat~d~m~~l~~lg~iLGprG 260 (289)
.++.||+++|.+- ..+.|++.|.+ + ++..+ +.+-..+||.+|..|.+--.+..+-+...+.|
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~----~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ 78 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA----HYDIMGVYDLIILAPQVRSYYREMKVDAERLG 78 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTS----CTTTGGGCSEEEECGGGGGGHHHHHHHHTTTT
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHH----HHhhccCCCEEEEChHHHHHHHHHHHHhhhcC
Confidence 3678999999863 24566667776 3 23333 22233579999999998766666666665544
No 37
>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}
Probab=27.59 E-value=1e+02 Score=28.27 Aligned_cols=78 Identities=13% Similarity=0.241 Sum_probs=47.7
Q ss_pred EEEecCcccHHHHHHcCCC---eecchHHHHHHH-cc-CccccEEEECccchHHHHhhcc--------ccCCCCC----C
Q psy15220 200 IAAFVPKEKYEQAKIAGAD---IVGMEDLAQKIK-SN-EVSCDLVIASPESMHIVSSLGK--------ILGPKGL----M 262 (289)
Q Consensus 200 I~Vfa~~~~~~~Ak~aGa~---~vG~~eLi~~Ik-~~-~~~~d~~iat~d~m~~l~~lg~--------iLGprGl----M 262 (289)
..+++-+.-+.-|.-.|.. ...+.|+++.+- .. .-..|-+++|++++..+..|+. -|+|.|| +
T Consensus 44 ~~Iva~DH~arg~lgv~~~p~~m~~~~~~l~~~~~~~~~~Gvdavl~~~gi~~d~~Li~~L~~~tv~gs~~~ggl~g~~~ 123 (307)
T 3fok_A 44 LFIVAADHPARGALAVGDNETAMANRYELLERMAIALSRPGVDGVLGTPDIIDDLAALGLLDDKIVVGSMNRGGLRGASF 123 (307)
T ss_dssp EEEEECCSGGGTCCCSSSSSSSSSCHHHHHHHHHHHHHSTTCCEEEECHHHHHHHHHTTCCTTCEEEEECCCCSCTTCTT
T ss_pred EEEEECCCCccccCccCCCccccccHHHHHHHHHHHHhccCCCEEEECcchhhcccceEEecCcccccccCccccccCCC
Confidence 3344434434434444433 224445555532 22 3457999999999998876555 3668777 8
Q ss_pred CCCCCCCCCc-cHHHHHH
Q psy15220 263 PNIKDGTLNS-DILTAIK 279 (289)
Q Consensus 263 P~~k~GTv~~-di~~~v~ 279 (289)
|+.+. ++. +++++++
T Consensus 124 ~~d~~--~~~~sVe~Avr 139 (307)
T 3fok_A 124 EMDDR--YTGYNVSSMVD 139 (307)
T ss_dssp TTSCC--CCSCCHHHHHH
T ss_pred Ccccc--ccccCHHHHHH
Confidence 88877 555 8888875
No 38
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=26.28 E-value=67 Score=24.90 Aligned_cols=86 Identities=13% Similarity=0.168 Sum_probs=54.7
Q ss_pred eEEEEecCcccHHHHHHcCCC--ee--cc----hHHHHHHHccC--ccccEEEECccchHHHHhhccccC-CCC-CCCCC
Q psy15220 198 IYIAAFVPKEKYEQAKIAGAD--IV--GM----EDLAQKIKSNE--VSCDLVIASPESMHIVSSLGKILG-PKG-LMPNI 265 (289)
Q Consensus 198 ~kI~Vfa~~~~~~~Ak~aGa~--~v--G~----~eLi~~Ik~~~--~~~d~~iat~d~m~~l~~lg~iLG-prG-lMP~~ 265 (289)
.||+|+++.+.+.--+-+|.. ++ .. +|+.+.+++.. .+|-.++-|.++...++.+ ..+- |-= ..|+.
T Consensus 1 MKIaVIGD~Dtv~GFrLaGi~~~~v~~~~~t~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~-~~i~~P~IleIPs~ 79 (111)
T 2qai_A 1 MKIVVMGDSDTVVGFRLAGVHEAYEYDESLESVERARNKLRELLERDDVGIILITERLAQRIGSL-PEVKFPIILQIPDK 79 (111)
T ss_dssp CEEEEEECHHHHHHHHHHTCSEEEECCSSHHHHHHHHHHHHHHHTCTTEEEEEEEHHHHHHHCSC-CCCSSSEEEEECTT
T ss_pred CEEEEEECHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHhhCCCeEEEEEcHHHHhhcccc-cccCCCEEEEECCC
Confidence 489999998888878889998 34 66 78877777653 4789999999998888732 3332 100 12443
Q ss_pred CCCCCC--ccHHHHHHHHhccc
Q psy15220 266 KDGTLN--SDILTAIKNAKSGQ 285 (289)
Q Consensus 266 k~GTv~--~di~~~v~~~k~G~ 285 (289)
. |+.. +.+.+.|+++-...
T Consensus 80 ~-g~~~~~d~i~~~V~~aiG~d 100 (111)
T 2qai_A 80 F-GSIYGEDILRDVVRRAIGVE 100 (111)
T ss_dssp C-------CTHHHHHHHHC---
T ss_pred C-CCCchHHHHHHHHHHHhChh
Confidence 2 3322 46888888775443
No 39
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=24.44 E-value=94 Score=23.32 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=33.6
Q ss_pred ceEEEEecCcc---------cHHHHHHcCCC----eecchHHHHHHHccCccccEEEECccchHHHHh
Q psy15220 197 KIYIAAFVPKE---------KYEQAKIAGAD----IVGMEDLAQKIKSNEVSCDLVIASPESMHIVSS 251 (289)
Q Consensus 197 ~~kI~Vfa~~~---------~~~~Ak~aGa~----~vG~~eLi~~Ik~~~~~~d~~iat~d~m~~l~~ 251 (289)
..||++.|..- ..+.+.+.|.+ .++-.++.+. ..++|++|+|+++-..+..
T Consensus 4 ~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~----~~~~D~Ii~t~~l~~~~~~ 67 (109)
T 2l2q_A 4 SMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEV----VDRFDVVLLAPQSRFNKKR 67 (109)
T ss_dssp CEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHH----TTTCSEEEECSCCSSHHHH
T ss_pred ceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhh----cCCCCEEEECCccHHHHHH
Confidence 46899998852 13455666754 4566666543 3579999999998755433
No 40
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=22.82 E-value=27 Score=30.44 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=20.4
Q ss_pred cCCCCCCceEEEEecCcccHHHHHHcCCCeec
Q psy15220 190 LPFSTGKKIYIAAFVPKEKYEQAKIAGADIVG 221 (289)
Q Consensus 190 LP~~~~k~~kI~Vfa~~~~~~~Ak~aGa~~vG 221 (289)
+|++..=.+|||=+.+.++++ |.++|||++|
T Consensus 15 ~p~~~~M~VKICGit~~ed~~-a~~~gaD~iG 45 (228)
T 4aaj_A 15 VPRGSHMFVKICGIKSLEELE-IVEKHADATG 45 (228)
T ss_dssp -----CCEEEECCCCSHHHHH-HHHTTCSEEE
T ss_pred CCCCCceEEEECCCCcHHHHH-HHHcCCCEEE
Confidence 455544458999888877775 6689999877
No 41
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=21.65 E-value=58 Score=25.00 Aligned_cols=89 Identities=10% Similarity=0.110 Sum_probs=57.9
Q ss_pred ceEEEEecCcccHHHHHHcCCCe--e-cchHHHHHHHccC--ccccEEEECccchHHHH-hhccccCCCCCC------CC
Q psy15220 197 KIYIAAFVPKEKYEQAKIAGADI--V-GMEDLAQKIKSNE--VSCDLVIASPESMHIVS-SLGKILGPKGLM------PN 264 (289)
Q Consensus 197 ~~kI~Vfa~~~~~~~Ak~aGa~~--v-G~~eLi~~Ik~~~--~~~d~~iat~d~m~~l~-~lg~iLGprGlM------P~ 264 (289)
..||+|+++.+.+.--+-+|.+. + ..+|+.+.+++.. .+|..++-|.++...++ .+-+.- ....+ |+
T Consensus 3 ~mkiaVIgD~dtv~GFrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~-~~~~~P~Il~IPs 81 (109)
T 2d00_A 3 PVRMAVIADPETAQGFRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLM-RGRDLPVLLPIAG 81 (109)
T ss_dssp CCCEEEEECHHHHHHHHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHHT-TCCCCCEEEEESC
T ss_pred ccEEEEEeCHHHHHHHHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHhhHHHHHHHH-hCCCCeEEEEECC
Confidence 45899999988888888899983 3 5677777676643 47999999999988774 333332 11223 44
Q ss_pred CCC--CCC-C-ccHHHHHHHHhccce
Q psy15220 265 IKD--GTL-N-SDILTAIKNAKSGQI 286 (289)
Q Consensus 265 ~k~--GTv-~-~di~~~v~~~k~G~~ 286 (289)
... |+. . +.+.+.|+++-.-.+
T Consensus 82 ~~~~~g~~~~~~~i~~~V~~aiG~di 107 (109)
T 2d00_A 82 LKEAFQGHDVEGYMRELVRKTIGFDI 107 (109)
T ss_dssp GGGGGSSSCHHHHHHHHHHHHHSCCC
T ss_pred CcccCCCcchHHHHHHHHHHHhCCcc
Confidence 341 333 1 247777877765544
Done!