RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15220
(289 letters)
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
[TaxId: 274]}
Length = 224
Score = 121 bits (305), Expect = 4e-34
Identities = 68/149 (45%), Positives = 99/149 (66%), Gaps = 1/149 (0%)
Query: 140 FDKNKIYSFDSAITLIKEAATAKFDESIDISIHLNVNIKRSDQIVRGSIVLPFSTGKKIY 199
D NKIY+ D A L+KE ATAKFDE++++ L ++ +RSDQ VRG++ LP GK++
Sbjct: 10 VDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVR 69
Query: 200 IAAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIV-SSLGKILGP 258
+ A EK ++A+ AGAD VG E++ QKI + D V+A+P+ M V S LG+ILGP
Sbjct: 70 VLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGP 129
Query: 259 KGLMPNIKDGTLNSDILTAIKNAKSGQIR 287
+GL+PN K GT+ +I I+ K+G+I
Sbjct: 130 RGLLPNPKAGTVGFNIGEIIREIKAGRIE 158
>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 71
Score = 113 bits (284), Expect = 9e-33
Identities = 47/70 (67%), Positives = 59/70 (84%)
Query: 3 KKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVF 62
KK+ ++KLQ+ AG ANPSPP+GPALGQ+G+NIMEFCK FNA+T IE G PIPV+ITV+
Sbjct: 1 KKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVY 60
Query: 63 SDKSFTFKKK 72
+D+SFTF K
Sbjct: 61 ADRSFTFVTK 70
>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 70
Score = 105 bits (264), Expect = 8e-30
Identities = 40/71 (56%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 2 VKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITV 61
+KK+ +KLQ+PAGKA P+PP+GPALGQ G NIMEF K FNA T + +PV IT+
Sbjct: 1 MKKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMG-DAIVPVEITI 59
Query: 62 FSDKSFTFKKK 72
++D+SFTF K
Sbjct: 60 YADRSFTFVTK 70
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 63
Score = 100 bits (252), Expect = 5e-28
Identities = 42/61 (68%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
Query: 9 IKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIITVFSDKSFT 68
IKLQ+PAGKA P+PP+GPALGQ G+NIMEFCK FNA+T + G +PV+ITV+ DKSFT
Sbjct: 2 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVYEDKSFT 60
Query: 69 F 69
F
Sbjct: 61 F 61
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 74
Score = 93.5 bits (233), Expect = 4e-25
Identities = 38/71 (53%), Positives = 49/71 (69%)
Query: 68 TFKKKVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMR 127
TF K P L+KKAAGI+ GS +P+ +KV + +++EIA +K DL AASI AAMR
Sbjct: 1 TFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMR 60
Query: 128 TIAGSARSMGI 138
I G+ARSMGI
Sbjct: 61 MIEGTARSMGI 71
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 92
Score = 91.0 bits (226), Expect = 5e-24
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 1 MVKKITGFIKLQIPAGKANPSPPIGPALGQRGLNIMEFCKNFNAQTQGIELGTPIPVIIT 60
+ L+ G+ + + P +G GL+ + + T G G I V +T
Sbjct: 11 FDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKAT-GDWKGLRITVKLT 69
Query: 61 VFSDKSFTFKKKVTPVTFLIKKAAG 85
+ ++ + V + L ++G
Sbjct: 70 I-QNRQAQI-EVVPSASALSGPSSG 92
>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 68
Score = 89.3 bits (222), Expect = 1e-23
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 75 PVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSAR 134
P L+KKAAGI+ GS KP+ DKVGK++ Q++EIA K D+T A I A R+I G+AR
Sbjct: 2 PAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTAR 61
Query: 135 SMGI 138
SMG+
Sbjct: 62 SMGL 65
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain
{Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 70
Score = 87.3 bits (217), Expect = 6e-23
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 75 PVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSAR 134
P LIK AG + GS +P D V L+ Q+K+IA K+ DL + ++ A + + G+
Sbjct: 4 PTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCT 63
Query: 135 SMGI 138
S+G+
Sbjct: 64 SLGV 67
>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 67
Score = 87.4 bits (217), Expect = 6e-23
Identities = 34/64 (53%), Positives = 47/64 (73%)
Query: 75 PVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSAR 134
P ++LI+KAAG++KG+ KP +KVG++T+ Q+ EIA K DL + AA R IAGSAR
Sbjct: 3 PASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSAR 62
Query: 135 SMGI 138
SMG+
Sbjct: 63 SMGV 66
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 70
Score = 85.1 bits (211), Expect = 4e-22
Identities = 38/67 (56%), Positives = 49/67 (73%)
Query: 72 KVTPVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAG 131
K P +FL+KKAAGI+KGS++P VGK+T QI+EIA K DL A S+ AAM+ I G
Sbjct: 1 KTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEG 60
Query: 132 SARSMGI 138
+A+SMGI
Sbjct: 61 TAKSMGI 67
>gi|226355464|ref|YP_002785204.1|(72-143:144) putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115]
gi|226317454|gb|ACO45450.1| putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115] E=8e-31
s/c=1.88 id=89% cov=101%
Length = 72
Score = 85.0 bits (211), Expect = 6e-22
Identities = 36/64 (56%), Positives = 48/64 (75%)
Query: 75 PVTFLIKKAAGIQKGSAKPHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSAR 134
P+++LI+KAAG+ KGSA P+ KVGKL + Q+ EIA K DL A S+ AA T+AG+AR
Sbjct: 2 PMSYLIRKAAGLSKGSATPNKAKVGKLNWEQVLEIAKTKMPDLNAGSLEAAANTVAGTAR 61
Query: 135 SMGI 138
SMG+
Sbjct: 62 SMGV 65
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 217
Score = 76.7 bits (188), Expect = 2e-17
Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 11/159 (6%)
Query: 138 IIFDKNKIYSFDSAITLIKEAATAKFDESIDISIHL-NVNIKRSDQIVRGSIVLPFSTGK 196
++ DK + + F +S++I + +++K+ D +R + LP K
Sbjct: 1 MLADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSK 60
Query: 197 KIYIAAFVPKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCD--------LVIASPESMHI 248
+ E+ E AK A +V + QK++ + +I
Sbjct: 61 AKRVLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALA 120
Query: 249 VSSLGKILGPKGLMPNIKDGTLNSDILTAIKNAKSGQIR 287
LG LGP+G P +DI I K +
Sbjct: 121 GRILGPALGPRGKFPTPL--PNTADISEYINRFKRSVLV 157
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 212
Score = 74.0 bits (181), Expect = 2e-16
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 141 DKNKIYSFDSAITLIKEAATA-KFDESIDISIHL-NVNIKRSDQIVRGSIVLPFSTGKKI 198
D+ + A+ +E A F +S + L +++++ + ++ +VLP GK+
Sbjct: 2 DREALLQ---AVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEA 58
Query: 199 YIAAFVPKEKYEQAKIAGADIVGMEDLAQKIKSN------EVSCDLVIASPESMHIVSS- 251
IA + +QA+ G ++ E++ + K+ + D IA + M ++
Sbjct: 59 KIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRY 118
Query: 252 LGKILGPKGLMPNIKDGT 269
+G ILGP+G MP
Sbjct: 119 MGVILGPRGKMPKPVPAN 136
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase
AadK {Bacillus subtilis [TaxId: 1423]}
Length = 135
Score = 25.2 bits (55), Expect = 6.1
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 93 PHSDKVGKLTYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGIIFDKNKIYS 147
+ +Y+ + E +DLT I A A + + ++ DK+ +
Sbjct: 80 FPPELGNWFSYIILFEDGN--KLDLTLIPIREAEDYFANNDGLVKVLLDKDSFIN 132
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 239
Score = 25.5 bits (55), Expect = 8.3
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 102 TYLQIKEIATIKNVDLTAASISAAMRTIAGSARSMGII 139
+ + IA KN+ + A+ A++ + + G +
Sbjct: 200 AFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRGWV 237
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 25.3 bits (54), Expect = 9.7
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 205 PKEKYEQAKIAGADIVGMEDLAQKIKSNEVSCDLVIASPESMHIVSSLGKI 255
P+EK +++G E L + +K E+ A+ H+ +
Sbjct: 4 PEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMS 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.365
Gapped
Lambda K H
0.267 0.0687 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,018,917
Number of extensions: 47468
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 20
Length of query: 289
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,254,276
Effective search space: 257126580
Effective search space used: 257126580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.9 bits)