BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15221
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6SV83|RS21_JANMA 30S ribosomal protein S21 OS=Janthinobacterium sp. (strain
Marseille) GN=rpsU PE=3 SV=1
Length = 70
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/70 (90%), Positives = 67/70 (95%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT IR+KENEPFEVA+RRFKRTIEKTGLLTDLRAREFYEKPT RKRKLAAA+KRHYKRI
Sbjct: 1 MTTIRLKENEPFEVAMRRFKRTIEKTGLLTDLRAREFYEKPTAERKRKLAAAVKRHYKRI 60
Query: 61 RSQQLPKKMY 70
RSQQLPKK+Y
Sbjct: 61 RSQQLPKKLY 70
>sp|A4G2B9|RS21_HERAR 30S ribosomal protein S21 OS=Herminiimonas arsenicoxydans GN=rpsU
PE=3 SV=1
Length = 70
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/70 (90%), Positives = 67/70 (95%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT IR+KENEPFEVA+RRFKRTIEKTGLLTDLRAREFYEKPT RKRKLAAA+KRHYKRI
Sbjct: 1 MTTIRLKENEPFEVAMRRFKRTIEKTGLLTDLRAREFYEKPTAERKRKLAAAVKRHYKRI 60
Query: 61 RSQQLPKKMY 70
RSQQLPKK+Y
Sbjct: 61 RSQQLPKKLY 70
>sp|Q62DT5|RS21B_BURMA 30S ribosomal protein S21 B OS=Burkholderia mallei (strain ATCC
23344) GN=rpsU2 PE=3 SV=1
Length = 70
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/70 (87%), Positives = 65/70 (92%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MTIIRVKENEPFEVA+RRFKRTIEK GLLT+LRAREFYEKPT RKRK AAA+KRHYKRI
Sbjct: 1 MTIIRVKENEPFEVAMRRFKRTIEKNGLLTELRAREFYEKPTAERKRKKAAAVKRHYKRI 60
Query: 61 RSQQLPKKMY 70
RSQ LPKK+Y
Sbjct: 61 RSQMLPKKLY 70
>sp|Q63JF8|RS213_BURPS 30S ribosomal protein S21 3 OS=Burkholderia pseudomallei (strain
K96243) GN=rpsU3 PE=3 SV=1
Length = 70
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/70 (87%), Positives = 65/70 (92%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MTIIRVKENEPFEVA+RRFKRTIEK GLLT+LRAREFYEKPT RKRK AAA+KRHYKRI
Sbjct: 1 MTIIRVKENEPFEVAMRRFKRTIEKNGLLTELRAREFYEKPTAERKRKKAAAVKRHYKRI 60
Query: 61 RSQQLPKKMY 70
RSQ LPKK+Y
Sbjct: 61 RSQMLPKKLY 70
>sp|Q3JKA9|RS213_BURP1 30S ribosomal protein S21 3 OS=Burkholderia pseudomallei (strain
1710b) GN=rpsU3 PE=3 SV=1
Length = 70
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/70 (87%), Positives = 65/70 (92%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MTIIRVKENEPFEVA+RRFKRTIEK GLLT+LRAREFYEKPT RKRK AAA+KRHYKRI
Sbjct: 1 MTIIRVKENEPFEVAMRRFKRTIEKNGLLTELRAREFYEKPTAERKRKKAAAVKRHYKRI 60
Query: 61 RSQQLPKKMY 70
RSQ LPKK+Y
Sbjct: 61 RSQMLPKKLY 70
>sp|Q393P8|RS21_BURS3 30S ribosomal protein S21 OS=Burkholderia sp. (strain 383)
GN=rpsU PE=3 SV=1
Length = 70
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/70 (87%), Positives = 65/70 (92%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MTIIRVKENEPFEVA+RRFKRTIEK GLLT+LRAREFYEKPT RKRK AAA+KRHYKRI
Sbjct: 1 MTIIRVKENEPFEVAMRRFKRTIEKNGLLTELRAREFYEKPTAERKRKKAAAVKRHYKRI 60
Query: 61 RSQQLPKKMY 70
RSQ LPKK+Y
Sbjct: 61 RSQTLPKKLY 70
>sp|Q1BLZ1|RS211_BURCA 30S ribosomal protein S21 1 OS=Burkholderia cenocepacia (strain
AU 1054) GN=rpsU1 PE=3 SV=1
Length = 70
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/70 (87%), Positives = 65/70 (92%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MTIIRVKENEPFEVA+RRFKRTIEK GLLT+LRAREFYEKPT RKRK AAA+KRHYKRI
Sbjct: 1 MTIIRVKENEPFEVAMRRFKRTIEKNGLLTELRAREFYEKPTAERKRKKAAAVKRHYKRI 60
Query: 61 RSQQLPKKMY 70
RSQ LPKK+Y
Sbjct: 61 RSQTLPKKLY 70
>sp|A1WM72|RS21_VEREI 30S ribosomal protein S21 OS=Verminephrobacter eiseniae (strain
EF01-2) GN=rpsU PE=3 SV=1
Length = 70
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 60/70 (85%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT IRVKENEPF+VA+RRFKRTIEK GLLTDLRAREFYEKPT RKRK AAA+KRHYKR+
Sbjct: 1 MTTIRVKENEPFDVALRRFKRTIEKLGLLTDLRAREFYEKPTAERKRKKAAAVKRHYKRV 60
Query: 61 RSQQLPKKMY 70
RS QLPKKMY
Sbjct: 61 RSMQLPKKMY 70
>sp|A9BTN3|RS21_DELAS 30S ribosomal protein S21 OS=Delftia acidovorans (strain DSM
14801 / SPH-1) GN=rpsU PE=3 SV=1
Length = 70
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/70 (84%), Positives = 65/70 (92%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT IRVKENEP+EVA+RRFKRTIEK GLLTDLRAREFYEKPT+ RKRK AAA+KRHYKR+
Sbjct: 1 MTTIRVKENEPYEVALRRFKRTIEKLGLLTDLRAREFYEKPTSERKRKKAAAVKRHYKRV 60
Query: 61 RSQQLPKKMY 70
RS QLPKK+Y
Sbjct: 61 RSMQLPKKLY 70
>sp|Q2T7N1|RS212_BURTA 30S ribosomal protein S21 2 OS=Burkholderia thailandensis (strain
E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rpsU2
PE=3 SV=1
Length = 70
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/70 (85%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MTIIRVKENEPFEVA+RRFKRTIEK GLLT+LRAREFYEKPT RKRK AAA+KRHYKRI
Sbjct: 1 MTIIRVKENEPFEVAMRRFKRTIEKNGLLTELRAREFYEKPTAERKRKKAAAVKRHYKRI 60
Query: 61 RSQQLPKKMY 70
R Q LPKK+Y
Sbjct: 61 RGQMLPKKLY 70
>sp|C5CTG9|RS21_VARPS 30S ribosomal protein S21 OS=Variovorax paradoxus (strain S110)
GN=rpsU PE=3 SV=1
Length = 70
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/70 (84%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT IRVKENEPF+VA+RRFKRTIEK GLLTDLRAREFYEKPT RKRK AAA+KRHYKR+
Sbjct: 1 MTTIRVKENEPFDVALRRFKRTIEKLGLLTDLRAREFYEKPTAERKRKKAAAVKRHYKRV 60
Query: 61 RSQQLPKKMY 70
RS QLPKK+Y
Sbjct: 61 RSMQLPKKLY 70
>sp|A1W9S4|RS21_ACISJ 30S ribosomal protein S21 OS=Acidovorax sp. (strain JS42) GN=rpsU
PE=3 SV=1
Length = 70
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/70 (84%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT IRVKENEPF+VA+RRFKRTIEK GLLTDLRAREFYEKPT RKRK AAA+KRHYKR+
Sbjct: 1 MTTIRVKENEPFDVALRRFKRTIEKLGLLTDLRAREFYEKPTAERKRKKAAAVKRHYKRV 60
Query: 61 RSQQLPKKMY 70
RS QLPKK+Y
Sbjct: 61 RSMQLPKKLY 70
>sp|B9MC79|RS21_ACIET 30S ribosomal protein S21 OS=Acidovorax ebreus (strain TPSY)
GN=rpsU PE=3 SV=1
Length = 70
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/70 (84%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT IRVKENEPF+VA+RRFKRTIEK GLLTDLRAREFYEKPT RKRK AAA+KRHYKR+
Sbjct: 1 MTTIRVKENEPFDVALRRFKRTIEKLGLLTDLRAREFYEKPTAERKRKKAAAVKRHYKRV 60
Query: 61 RSQQLPKKMY 70
RS QLPKK+Y
Sbjct: 61 RSMQLPKKLY 70
>sp|A1TNY6|RS21_ACIAC 30S ribosomal protein S21 OS=Acidovorax citrulli (strain AAC00-1)
GN=rpsU PE=3 SV=1
Length = 70
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/70 (84%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT IRVKENEPF+VA+RRFKRTIEK GLLTDLRAREFYEKPT RKRK AAA+KRHYKR+
Sbjct: 1 MTTIRVKENEPFDVALRRFKRTIEKLGLLTDLRAREFYEKPTAERKRKKAAAVKRHYKRV 60
Query: 61 RSQQLPKKMY 70
RS QLPKK+Y
Sbjct: 61 RSMQLPKKLY 70
>sp|A2SF60|RS21_METPP 30S ribosomal protein S21 OS=Methylibium petroleiphilum (strain
PM1) GN=rpsU PE=3 SV=1
Length = 70
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/70 (81%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT +RVKENEPF+VA+RRFKRTIEK GLLTDLRAREFYEKPT RKRK AAA+KRH+KR+
Sbjct: 1 MTTVRVKENEPFDVALRRFKRTIEKIGLLTDLRAREFYEKPTAERKRKKAAAVKRHFKRV 60
Query: 61 RSQQLPKKMY 70
RS QLPKK+Y
Sbjct: 61 RSMQLPKKLY 70
>sp|Q21UF7|RS21_RHOFD 30S ribosomal protein S21 OS=Rhodoferax ferrireducens (strain DSM
15236 / ATCC BAA-621 / T118) GN=rpsU PE=3 SV=1
Length = 70
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/70 (84%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT IRVKENEPF+VA+RRFKRTIEK GLLTDLRAREFYEKPT RKRK AAA+KR+YKRI
Sbjct: 1 MTTIRVKENEPFDVALRRFKRTIEKLGLLTDLRAREFYEKPTAERKRKKAAAVKRNYKRI 60
Query: 61 RSQQLPKKMY 70
R+ QLPKKMY
Sbjct: 61 RAMQLPKKMY 70
>sp|Q2KYB0|RS21_BORA1 30S ribosomal protein S21 OS=Bordetella avium (strain 197N)
GN=rpsU PE=3 SV=1
Length = 70
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/70 (81%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M I+R+KENEPFE A+RRFKRTIEKTGLLT+LR+REFYEKPT RKRK AAA+KRHYKRI
Sbjct: 1 MPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRI 60
Query: 61 RSQQLPKKMY 70
RSQQLP +MY
Sbjct: 61 RSQQLPPRMY 70
>sp|B1XZ34|RS21_LEPCP 30S ribosomal protein S21 OS=Leptothrix cholodnii (strain ATCC
51168 / LMG 8142 / SP-6) GN=rpsU PE=3 SV=1
Length = 70
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT IRVKENEPF+VA+RRFKRTIEK GLLT+LRAREFYEKPT RKRK AAA+KRHYKR+
Sbjct: 1 MTTIRVKENEPFDVALRRFKRTIEKLGLLTELRAREFYEKPTAERKRKKAAAVKRHYKRV 60
Query: 61 RSQQLPKKMY 70
RS QLPKK+Y
Sbjct: 61 RSMQLPKKLY 70
>sp|Q7NRL5|RS21_CHRVO 30S ribosomal protein S21 OS=Chromobacterium violaceum (strain
ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB
9131 / NCTC 9757) GN=rpsU PE=3 SV=1
Length = 70
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 63/70 (90%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M IRVKENEPFEVA+RRFKR +EKTGLLT+LRAREFYEKPTT RKRK AAA+KRHYKRI
Sbjct: 1 MPTIRVKENEPFEVALRRFKRAVEKTGLLTELRAREFYEKPTTERKRKHAAAVKRHYKRI 60
Query: 61 RSQQLPKKMY 70
RSQ LP K+Y
Sbjct: 61 RSQMLPPKLY 70
>sp|Q7VWM3|RS21_BORPE 30S ribosomal protein S21 OS=Bordetella pertussis (strain Tohama
I / ATCC BAA-589 / NCTC 13251) GN=rpsU PE=3 SV=1
Length = 70
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M I+R+KENEPFE A+RRFKRTIEKTGLLT+LR+REFYEKPT RKRK AAA+KRHYKRI
Sbjct: 1 MPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRI 60
Query: 61 RSQQLPKKMY 70
RSQQLP ++Y
Sbjct: 61 RSQQLPPRLY 70
>sp|A9IK87|RS21_BORPD 30S ribosomal protein S21 OS=Bordetella petrii (strain ATCC
BAA-461 / DSM 12804 / CCUG 43448) GN=rpsU PE=3 SV=1
Length = 70
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M I+R+KENEPFE A+RRFKRTIEKTGLLT+LR+REFYEKPT RKRK AAA+KRHYKRI
Sbjct: 1 MPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRI 60
Query: 61 RSQQLPKKMY 70
RSQQLP ++Y
Sbjct: 61 RSQQLPPRLY 70
>sp|Q7W6Q9|RS21_BORPA 30S ribosomal protein S21 OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=rpsU PE=3 SV=2
Length = 70
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M I+R+KENEPFE A+RRFKRTIEKTGLLT+LR+REFYEKPT RKRK AAA+KRHYKRI
Sbjct: 1 MPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRI 60
Query: 61 RSQQLPKKMY 70
RSQQLP ++Y
Sbjct: 61 RSQQLPPRLY 70
>sp|Q7WHP3|RS21_BORBR 30S ribosomal protein S21 OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=rpsU PE=3 SV=2
Length = 70
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M I+R+KENEPFE A+RRFKRTIEKTGLLT+LR+REFYEKPT RKRK AAA+KRHYKRI
Sbjct: 1 MPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRI 60
Query: 61 RSQQLPKKMY 70
RSQQLP ++Y
Sbjct: 61 RSQQLPPRLY 70
>sp|C1DC39|RS21_LARHH 30S ribosomal protein S21 OS=Laribacter hongkongensis (strain
HLHK9) GN=rpsU PE=3 SV=1
Length = 70
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/70 (81%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M +RVKENEPFEVA+RRFKR+IEKTGLLT+LRAREFYEKPTT RKRK AAA+KRHYKR+
Sbjct: 1 MPSVRVKENEPFEVAMRRFKRSIEKTGLLTELRAREFYEKPTTERKRKKAAAVKRHYKRL 60
Query: 61 RSQQLPKKMY 70
RSQ LP K+Y
Sbjct: 61 RSQMLPPKLY 70
>sp|Q2Y7B7|RS21_NITMU 30S ribosomal protein S21 OS=Nitrosospira multiformis (strain
ATCC 25196 / NCIMB 11849) GN=rpsU PE=3 SV=1
Length = 70
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT I+VKENEPFEVA+RRFKRTIEKTGLLT+LRAREFYEKPT RKRKLAAA+KR YKR+
Sbjct: 1 MTTIKVKENEPFEVAMRRFKRTIEKTGLLTELRAREFYEKPTAERKRKLAAAVKRTYKRL 60
Query: 61 RSQQLPKKMY 70
RSQ LP K+Y
Sbjct: 61 RSQLLPPKLY 70
>sp|Q127U4|RS21_POLSJ 30S ribosomal protein S21 OS=Polaromonas sp. (strain JS666 / ATCC
BAA-500) GN=rpsU PE=3 SV=1
Length = 70
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/70 (81%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT IRVK+NEPF+VA+RRFKRTIEK GLLTDLRAREFYEKPT RKRK AAA+KR+YKRI
Sbjct: 1 MTTIRVKDNEPFDVALRRFKRTIEKLGLLTDLRAREFYEKPTAERKRKKAAAVKRNYKRI 60
Query: 61 RSQQLPKKMY 70
R+ QLPKK+Y
Sbjct: 61 RAMQLPKKLY 70
>sp|A1VM24|RS21_POLNA 30S ribosomal protein S21 OS=Polaromonas naphthalenivorans
(strain CJ2) GN=rpsU PE=3 SV=1
Length = 70
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/70 (81%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT IRVK+NEPF+VA+RRFKRTIEK GLLTDLRAREFYEKPT RKRK AAA+KR+YKRI
Sbjct: 1 MTTIRVKDNEPFDVALRRFKRTIEKLGLLTDLRAREFYEKPTAERKRKKAAAVKRNYKRI 60
Query: 61 RSQQLPKKMY 70
R+ QLPKK+Y
Sbjct: 61 RAMQLPKKLY 70
>sp|Q1GYU5|RS21_METFK 30S ribosomal protein S21 OS=Methylobacillus flagellatus (strain
KT / ATCC 51484 / DSM 6875) GN=rpsU PE=3 SV=1
Length = 70
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 63/70 (90%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M+ +RVKENEPF+VA+RRFKR IEKTGLLTDLRARE+YEKPT RKRK AAA+KRHY+RI
Sbjct: 1 MSSVRVKENEPFDVALRRFKRMIEKTGLLTDLRAREYYEKPTWERKRKAAAAVKRHYRRI 60
Query: 61 RSQQLPKKMY 70
RSQ LP K+Y
Sbjct: 61 RSQTLPTKLY 70
>sp|Q13RW7|RS212_BURXL 30S ribosomal protein S21 2 OS=Burkholderia xenovorans (strain
LB400) GN=rpsU2 PE=3 SV=1
Length = 70
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 63/70 (90%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT IRVK+NEPFEVA+RRFKRT+EKTGLLT+LRAREFYEKPT RKRK AAA+KRH+KR+
Sbjct: 1 MTTIRVKDNEPFEVAMRRFKRTMEKTGLLTELRAREFYEKPTAERKRKKAAAVKRHFKRL 60
Query: 61 RSQQLPKKMY 70
R Q LPKK Y
Sbjct: 61 RGQMLPKKFY 70
>sp|Q82XN1|RS21_NITEU 30S ribosomal protein S21 OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=rpsU PE=3 SV=1
Length = 70
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT ++VKENEPFE+A+RRFKR+IEKTGLLT+LRAREFYEKPT VRKRK AAA+KR YKR+
Sbjct: 1 MTTVKVKENEPFEIAMRRFKRSIEKTGLLTELRAREFYEKPTAVRKRKHAAAVKRTYKRL 60
Query: 61 RSQQLPKKMY 70
RSQ LP K+Y
Sbjct: 61 RSQMLPPKLY 70
>sp|Q0AJ90|RS21_NITEC 30S ribosomal protein S21 OS=Nitrosomonas eutropha (strain C91)
GN=rpsU PE=3 SV=1
Length = 70
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT ++VKENEPFE+A+RRFKR+IEKTGLLT+LRAREFYEKPT VRKRK AAA+KR YKR+
Sbjct: 1 MTTVKVKENEPFEIAMRRFKRSIEKTGLLTELRAREFYEKPTAVRKRKHAAAVKRTYKRL 60
Query: 61 RSQQLPKKMY 70
RSQ LP K+Y
Sbjct: 61 RSQMLPPKLY 70
>sp|A1KAI5|RS21_AZOSB 30S ribosomal protein S21 OS=Azoarcus sp. (strain BH72) GN=rpsU
PE=3 SV=1
Length = 70
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 64/70 (91%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M IRVKENEPFEVAIRRFKRTIEKTG+LT+LR+REFYEKPT RKRKLAAA+KR++KR+
Sbjct: 1 MPGIRVKENEPFEVAIRRFKRTIEKTGVLTELRSREFYEKPTAERKRKLAAAVKRNHKRL 60
Query: 61 RSQQLPKKMY 70
RSQ LP K+Y
Sbjct: 61 RSQMLPPKLY 70
>sp|Q5P262|RS21_AROAE 30S ribosomal protein S21 OS=Aromatoleum aromaticum (strain EbN1)
GN=rpsU PE=3 SV=1
Length = 70
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/70 (81%), Positives = 63/70 (90%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M IRVKENEPFEVAIRRFKRTIEKTGLLT+LRAREFYEKPT RKRK AAA+KR++KR+
Sbjct: 1 MPGIRVKENEPFEVAIRRFKRTIEKTGLLTELRAREFYEKPTAERKRKSAAAVKRNHKRL 60
Query: 61 RSQQLPKKMY 70
RSQ LP K+Y
Sbjct: 61 RSQTLPPKLY 70
>sp|Q3SGB2|RS21_THIDA 30S ribosomal protein S21 OS=Thiobacillus denitrificans (strain
ATCC 25259) GN=rpsU PE=3 SV=1
Length = 70
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 62/70 (88%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M ++VKENEPF+VA+RRFKR+IEK GLLT+LRAREFYEKPT RKRKLAAA+KR KR+
Sbjct: 1 MPHVKVKENEPFDVALRRFKRSIEKVGLLTELRAREFYEKPTAERKRKLAAAVKRQSKRL 60
Query: 61 RSQQLPKKMY 70
RSQQLP KMY
Sbjct: 61 RSQQLPPKMY 70
>sp|Q1LK40|RS212_RALME 30S ribosomal protein S21 2 OS=Ralstonia metallidurans (strain
CH34 / ATCC 43123 / DSM 2839) GN=rpsU2 PE=3 SV=1
Length = 70
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 62/70 (88%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT IR+KENEPFEVA+RRFKRTIEK GLL +LRAREFYEKPT RKRK AA+KR+YKR+
Sbjct: 1 MTTIRLKENEPFEVALRRFKRTIEKNGLLPELRAREFYEKPTAERKRKRDAAVKRNYKRL 60
Query: 61 RSQQLPKKMY 70
RSQ LPKK+Y
Sbjct: 61 RSQMLPKKLY 70
>sp|Q47IP5|RS21_DECAR 30S ribosomal protein S21 OS=Dechloromonas aromatica (strain RCB)
GN=rpsU PE=3 SV=1
Length = 70
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 62/70 (88%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M IRVKENEPFEVAIRRFKRT+EKTGLLT+LRAREFYEKPTT RKRK AAA+KR +KR+
Sbjct: 1 MPNIRVKENEPFEVAIRRFKRTVEKTGLLTELRAREFYEKPTTERKRKAAAAVKRQHKRL 60
Query: 61 RSQQLPKKMY 70
RS LP K+Y
Sbjct: 61 RSLTLPPKLY 70
>sp|A1KW26|RS21_NEIMF 30S ribosomal protein S21 OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=rpsU PE=3
SV=1
Length = 70
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 61/70 (87%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M IRVKENEPFEVA+RRFKR +EKTGLLT+LRARE YEKPTT RKRK AAA+KR KR+
Sbjct: 1 MPAIRVKENEPFEVAMRRFKRAVEKTGLLTELRAREAYEKPTTERKRKKAAAVKRLQKRL 60
Query: 61 RSQQLPKKMY 70
RSQQLP KMY
Sbjct: 61 RSQQLPPKMY 70
>sp|P66519|RS21_NEIMB 30S ribosomal protein S21 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsU PE=1 SV=1
Length = 70
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 61/70 (87%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M IRVKENEPFEVA+RRFKR +EKTGLLT+LRARE YEKPTT RKRK AAA+KR KR+
Sbjct: 1 MPAIRVKENEPFEVAMRRFKRAVEKTGLLTELRAREAYEKPTTERKRKKAAAVKRLQKRL 60
Query: 61 RSQQLPKKMY 70
RSQQLP KMY
Sbjct: 61 RSQQLPPKMY 70
>sp|P66518|RS21_NEIMA 30S ribosomal protein S21 OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=rpsU PE=3 SV=1
Length = 70
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 61/70 (87%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M IRVKENEPFEVA+RRFKR +EKTGLLT+LRARE YEKPTT RKRK AAA+KR KR+
Sbjct: 1 MPAIRVKENEPFEVAMRRFKRAVEKTGLLTELRAREAYEKPTTERKRKKAAAVKRLQKRL 60
Query: 61 RSQQLPKKMY 70
RSQQLP KMY
Sbjct: 61 RSQQLPPKMY 70
>sp|A9M105|RS21_NEIM0 30S ribosomal protein S21 OS=Neisseria meningitidis serogroup C
(strain 053442) GN=rpsU PE=3 SV=1
Length = 70
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 61/70 (87%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M IRVKENEPFEVA+RRFKR +EKTGLLT+LRARE YEKPTT RKRK AAA+KR KR+
Sbjct: 1 MPAIRVKENEPFEVAMRRFKRAVEKTGLLTELRAREAYEKPTTERKRKKAAAVKRLQKRL 60
Query: 61 RSQQLPKKMY 70
RSQQLP KMY
Sbjct: 61 RSQQLPPKMY 70
>sp|B4RRF0|RS21_NEIG2 30S ribosomal protein S21 OS=Neisseria gonorrhoeae (strain
NCCP11945) GN=rpsU PE=3 SV=1
Length = 70
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 61/70 (87%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M IRVKENEPFEVA+RRFKR +EKTGLLT+LRARE YEKPTT RKRK AAA+KR KR+
Sbjct: 1 MPAIRVKENEPFEVAMRRFKRAVEKTGLLTELRAREAYEKPTTERKRKKAAAVKRLQKRL 60
Query: 61 RSQQLPKKMY 70
RSQQLP KMY
Sbjct: 61 RSQQLPPKMY 70
>sp|Q5F506|RS21_NEIG1 30S ribosomal protein S21 OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=rpsU PE=3 SV=1
Length = 70
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 61/70 (87%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M IRVKENEPFEVA+RRFKR +EKTGLLT+LRARE YEKPTT RKRK AAA+KR KR+
Sbjct: 1 MPAIRVKENEPFEVAMRRFKRAVEKTGLLTELRAREAYEKPTTERKRKKAAAVKRLQKRL 60
Query: 61 RSQQLPKKMY 70
RSQQLP KMY
Sbjct: 61 RSQQLPPKMY 70
>sp|A4SZK0|RS21_POLSQ 30S ribosomal protein S21 OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=rpsU PE=3 SV=1
Length = 70
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 63/70 (90%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT +R++ENEPFEVA+RRFKRTIEK GLLTDLRAREFYEKPT RKRK AAA KRHYKRI
Sbjct: 1 MTTVRLRENEPFEVALRRFKRTIEKNGLLTDLRAREFYEKPTAERKRKKAAAAKRHYKRI 60
Query: 61 RSQQLPKKMY 70
RSQ LPKK+Y
Sbjct: 61 RSQMLPKKLY 70
>sp|B1XVZ1|RS21_POLNS 30S ribosomal protein S21 OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=rpsU PE=3 SV=1
Length = 70
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 63/70 (90%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT +R++ENEPFEVA+RRFKRTIEK GLLTDLRAREFYEKPT RKRK AAA KRHYKRI
Sbjct: 1 MTTVRLRENEPFEVALRRFKRTIEKNGLLTDLRAREFYEKPTAERKRKKAAAAKRHYKRI 60
Query: 61 RSQQLPKKMY 70
RSQ LPKK+Y
Sbjct: 61 RSQMLPKKLY 70
>sp|Q13SW3|RS211_BURXL 30S ribosomal protein S21 1 OS=Burkholderia xenovorans (strain
LB400) GN=rpsU1 PE=3 SV=1
Length = 70
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 59/70 (84%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT I +KENEPFEVAIRRF+R IEK GL+ +LR R+ YEKPTT RKRK AAA+KR +KR+
Sbjct: 1 MTTILLKENEPFEVAIRRFRRAIEKNGLIAELRERQSYEKPTTARKRKKAAAVKRLHKRL 60
Query: 61 RSQQLPKKMY 70
RSQ LPKK++
Sbjct: 61 RSQMLPKKLH 70
>sp|A2S6T3|RS21_BURM9 30S ribosomal protein S21 OS=Burkholderia mallei (strain NCTC
10229) GN=rpsU PE=3 SV=1
Length = 70
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 59/70 (84%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT I +KENEPFEVAIRRF+R IEK GL+ +LR R+ YEKPT VRKRK AAA+KR +KR+
Sbjct: 1 MTTILLKENEPFEVAIRRFRRAIEKNGLIAELRERQAYEKPTAVRKRKKAAAVKRLHKRL 60
Query: 61 RSQQLPKKMY 70
RSQ LPKK++
Sbjct: 61 RSQMLPKKLH 70
>sp|Q9WW25|RS21A_BURMA 30S ribosomal protein S21 A OS=Burkholderia mallei (strain ATCC
23344) GN=rpsU1 PE=3 SV=2
Length = 70
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 59/70 (84%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT I +KENEPFEVAIRRF+R IEK GL+ +LR R+ YEKPT VRKRK AAA+KR +KR+
Sbjct: 1 MTTILLKENEPFEVAIRRFRRAIEKNGLIAELRERQAYEKPTAVRKRKKAAAVKRLHKRL 60
Query: 61 RSQQLPKKMY 70
RSQ LPKK++
Sbjct: 61 RSQMLPKKLH 70
>sp|Q2STR0|RS211_BURTA 30S ribosomal protein S21 1 OS=Burkholderia thailandensis (strain
E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rpsU1
PE=3 SV=2
Length = 70
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 59/70 (84%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT I +KENEPFEVAIRRF+R IEK GL+ +LR R+ YEKPT VRKRK AAA+KR +KR+
Sbjct: 1 MTTILLKENEPFEVAIRRFRRAIEKNGLIAELRERQAYEKPTAVRKRKKAAAVKRLHKRL 60
Query: 61 RSQQLPKKMY 70
RSQ LPKK++
Sbjct: 61 RSQMLPKKLH 70
>sp|P70943|RS211_BURPS 30S ribosomal protein S21 1 OS=Burkholderia pseudomallei (strain
K96243) GN=rpsU1 PE=3 SV=1
Length = 70
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 59/70 (84%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT I +KENEPFEVAIRRF+R IEK GL+ +LR R+ YEKPT VRKRK AAA+KR +KR+
Sbjct: 1 MTTILLKENEPFEVAIRRFRRAIEKNGLIAELRERQAYEKPTAVRKRKKAAAVKRLHKRL 60
Query: 61 RSQQLPKKMY 70
RSQ LPKK++
Sbjct: 61 RSQMLPKKLH 70
>sp|Q3JY47|RS211_BURP1 30S ribosomal protein S21 1 OS=Burkholderia pseudomallei (strain
1710b) GN=rpsU1 PE=3 SV=2
Length = 70
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 59/70 (84%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
MT I +KENEPFEVAIRRF+R IEK GL+ +LR R+ YEKPT VRKRK AAA+KR +KR+
Sbjct: 1 MTTILLKENEPFEVAIRRFRRAIEKNGLIAELRERQAYEKPTAVRKRKKAAAVKRLHKRL 60
Query: 61 RSQQLPKKMY 70
RSQ LPKK++
Sbjct: 61 RSQMLPKKLH 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,187,265
Number of Sequences: 539616
Number of extensions: 648466
Number of successful extensions: 3859
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3215
Number of HSP's gapped (non-prelim): 647
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)