Your job contains 1 sequence.
>psy15221
MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI
RSQQLPKKMY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15221
(70 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|SO_1288 - symbol:SO_1288 "ribosomal protein S21"... 217 7.5e-18 1
UNIPROTKB|P68679 - symbol:rpsU species:83333 "Escherichia... 212 2.5e-17 1
UNIPROTKB|P66532 - symbol:rpsU "30S ribosomal protein S21... 209 5.3e-17 1
TIGR_CMR|VC_0520 - symbol:VC_0520 "ribosomal protein S21"... 209 5.3e-17 1
TIGR_CMR|CPS_4337 - symbol:CPS_4337 "ribosomal protein S2... 202 2.9e-16 1
TIGR_CMR|CBU_1593 - symbol:CBU_1593 "ribosomal protein S2... 182 3.8e-14 1
TIGR_CMR|GSU_3093 - symbol:GSU_3093 "ribosomal protein S2... 153 4.5e-11 1
TIGR_CMR|BA_4534 - symbol:BA_4534 "ribosomal protein S21"... 149 1.2e-10 1
TIGR_CMR|CHY_0421 - symbol:CHY_0421 "ribosomal protein S2... 135 3.6e-09 1
TIGR_CMR|CJE_0419 - symbol:CJE_0419 "ribosomal protein S2... 119 1.8e-07 1
TIGR_CMR|DET_0350 - symbol:DET_0350 "ribosomal protein S2... 113 7.8e-07 1
TAIR|locus:2095143 - symbol:GHS1 "GLUCOSE HYPERSENSITIVE ... 96 7.7e-05 1
TIGR_CMR|SPO_0229 - symbol:SPO_0229 "ribosomal protein S2... 86 0.00057 1
>TIGR_CMR|SO_1288 [details] [associations]
symbol:SO_1288 "ribosomal protein S21" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001911 InterPro:IPR018278 Pfam:PF01165 PRINTS:PR00976
ProDom:PD005521 PROSITE:PS01181 GO:GO:0006412 GO:GO:0005840
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
eggNOG:COG0828 KO:K02970 ProtClustDB:PRK00270 HAMAP:MF_00358
TIGRFAMs:TIGR00030 HOGENOM:HOG000157460 RefSeq:NP_716910.1
ProteinModelPortal:Q8EHD7 SMR:Q8EHD7 DNASU:1169107 GeneID:1169107
KEGG:son:SO_1288 PATRIC:23522224 OMA:FFEKPTW Uniprot:Q8EHD7
Length = 71
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 42/71 (59%), Positives = 56/71 (78%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M II+V+ENEPF+VA+RRFKR+ EK G+L D+RAREFYEKPTT RKR AAA+KR K++
Sbjct: 1 MPIIKVRENEPFDVALRRFKRSCEKAGILADVRAREFYEKPTTARKRAKAAAVKRLAKKL 60
Query: 61 RSQQLPK-KMY 70
+ + ++Y
Sbjct: 61 SRENARRVRLY 71
>UNIPROTKB|P68679 [details] [associations]
symbol:rpsU species:83333 "Escherichia coli K-12"
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR001911
InterPro:IPR018278 Pfam:PF01165 PRINTS:PR00976 ProDom:PD005521
PROSITE:PS01181 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0003735 EMBL:U28379
PDB:3J00 PDBsum:3J00 PDB:3FIH PDB:3IZV PDB:3IZW PDBsum:3FIH
PDBsum:3IZV PDBsum:3IZW GO:GO:0022627 EMBL:J01687 EMBL:V00346
PDB:3SFS PDB:3UOQ PDBsum:3SFS PDBsum:3UOQ PDB:4GAS PDB:4GD1
PDBsum:4GAS PDBsum:4GD1 PDB:1VS5 PDB:1VS7 PDB:2AVY PDB:2AW7
PDB:2I2P PDB:2I2U PDB:2QAL PDB:2QAN PDB:2QB9 PDB:2QBB PDB:2QBD
PDB:2QBF PDB:2QBH PDB:2QBJ PDB:2QOU PDB:2QOW PDB:2QOY PDB:2QP0
PDB:2VHO PDB:2VHP PDB:2WWL PDB:2YKR PDB:2Z4K PDB:2Z4M PDB:3DF1
PDB:3DF3 PDB:3E1A PDB:3E1C PDB:3I1M PDB:3I1O PDB:3I1Q PDB:3I1S
PDB:3I1Z PDB:3I21 PDB:3J0U PDB:3J0V PDB:3J0X PDB:3J0Z PDB:3J10
PDB:3J13 PDB:3J18 PDB:3KC4 PDB:3OAQ PDB:3OAR PDB:3OFA PDB:3OFB
PDB:3OFO PDB:3OFP PDB:3OFX PDB:3OFY PDB:3OR9 PDB:3ORA PDB:4A2I
PDB:4ADV PDB:4GAQ PDB:4GD2 PDBsum:1VS5 PDBsum:1VS7 PDBsum:2AVY
PDBsum:2AW7 PDBsum:2I2P PDBsum:2I2U PDBsum:2QAL PDBsum:2QAN
PDBsum:2QB9 PDBsum:2QBB PDBsum:2QBD PDBsum:2QBF PDBsum:2QBH
PDBsum:2QBJ PDBsum:2QOU PDBsum:2QOW PDBsum:2QOY PDBsum:2QP0
PDBsum:2VHO PDBsum:2VHP PDBsum:2WWL PDBsum:2YKR PDBsum:2Z4K
PDBsum:2Z4M PDBsum:3DF1 PDBsum:3DF3 PDBsum:3E1A PDBsum:3E1C
PDBsum:3I1M PDBsum:3I1O PDBsum:3I1Q PDBsum:3I1S PDBsum:3I1Z
PDBsum:3I21 PDBsum:3J0U PDBsum:3J0V PDBsum:3J0X PDBsum:3J0Z
PDBsum:3J10 PDBsum:3J13 PDBsum:3J18 PDBsum:3KC4 PDBsum:3OAQ
PDBsum:3OAR PDBsum:3OFA PDBsum:3OFB PDBsum:3OFO PDBsum:3OFP
PDBsum:3OFX PDBsum:3OFY PDBsum:3OR9 PDBsum:3ORA PDBsum:4A2I
PDBsum:4ADV PDBsum:4GAQ PDBsum:4GD2 eggNOG:COG0828 KO:K02970
ProtClustDB:PRK00270 HAMAP:MF_00358 TIGRFAMs:TIGR00030
HOGENOM:HOG000157460 PIR:A02749 RefSeq:NP_417537.1
RefSeq:YP_491257.1 ProteinModelPortal:P68679 SMR:P68679
DIP:DIP-47839N IntAct:P68679 MINT:MINT-1281887 PaxDb:P68679
PRIDE:P68679 EnsemblBacteria:EBESCT00000003297
EnsemblBacteria:EBESCT00000003298 EnsemblBacteria:EBESCT00000003299
EnsemblBacteria:EBESCT00000003300 EnsemblBacteria:EBESCT00000017874
GeneID:12933220 GeneID:947577 KEGG:ecj:Y75_p2991 KEGG:eco:b3065
PATRIC:32121544 EchoBASE:EB0913 EcoGene:EG10920 OMA:PFERKPP
BioCyc:EcoCyc:EG10920-MONOMER BioCyc:ECOL316407:JW3037-MONOMER
EvolutionaryTrace:P68679 Genevestigator:P68679 Uniprot:P68679
Length = 71
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 39/71 (54%), Positives = 56/71 (78%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M +I+V+ENEPF+VA+RRFKR+ EK G+L ++R REFYEKPTT RKR A+A+KRH K++
Sbjct: 1 MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKL 60
Query: 61 RSQQLPK-KMY 70
+ + ++Y
Sbjct: 61 ARENARRTRLY 71
>UNIPROTKB|P66532 [details] [associations]
symbol:rpsU "30S ribosomal protein S21" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR001911 InterPro:IPR018278
Pfam:PF01165 PRINTS:PR00976 ProDom:PD005521 PROSITE:PS01181
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0003735 eggNOG:COG0828 KO:K02970 ProtClustDB:PRK00270
HAMAP:MF_00358 TIGRFAMs:TIGR00030 OMA:EKPSIKR PIR:H82312
RefSeq:NP_230171.1 ProteinModelPortal:P66532 SMR:P66532
DNASU:2615812 GeneID:2615812 KEGG:vch:VC0520 PATRIC:20080139
Uniprot:P66532
Length = 71
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 39/71 (54%), Positives = 56/71 (78%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M +++V+ENEPF+VA+RRFKR+ EK G+L+++R RE YEKPTTVRKR AAA KRH K++
Sbjct: 1 MPVVKVRENEPFDVALRRFKRSCEKAGILSEVRRREHYEKPTTVRKRAKAAAQKRHAKKL 60
Query: 61 RSQQLPK-KMY 70
+ + ++Y
Sbjct: 61 ARENARRVRLY 71
>TIGR_CMR|VC_0520 [details] [associations]
symbol:VC_0520 "ribosomal protein S21" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001911 InterPro:IPR018278 Pfam:PF01165 PRINTS:PR00976
ProDom:PD005521 PROSITE:PS01181 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
eggNOG:COG0828 KO:K02970 ProtClustDB:PRK00270 HAMAP:MF_00358
TIGRFAMs:TIGR00030 OMA:EKPSIKR PIR:H82312 RefSeq:NP_230171.1
ProteinModelPortal:P66532 SMR:P66532 DNASU:2615812 GeneID:2615812
KEGG:vch:VC0520 PATRIC:20080139 Uniprot:P66532
Length = 71
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 39/71 (54%), Positives = 56/71 (78%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M +++V+ENEPF+VA+RRFKR+ EK G+L+++R RE YEKPTTVRKR AAA KRH K++
Sbjct: 1 MPVVKVRENEPFDVALRRFKRSCEKAGILSEVRRREHYEKPTTVRKRAKAAAQKRHAKKL 60
Query: 61 RSQQLPK-KMY 70
+ + ++Y
Sbjct: 61 ARENARRVRLY 71
>TIGR_CMR|CPS_4337 [details] [associations]
symbol:CPS_4337 "ribosomal protein S21" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR001911 InterPro:IPR018278 Pfam:PF01165 PRINTS:PR00976
ProDom:PD005521 PROSITE:PS01181 GO:GO:0006412 GO:GO:0005840
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
eggNOG:COG0828 KO:K02970 ProtClustDB:PRK00270 HAMAP:MF_00358
TIGRFAMs:TIGR00030 HOGENOM:HOG000157460 RefSeq:YP_270986.1
ProteinModelPortal:Q47W36 SMR:Q47W36 STRING:Q47W36 PRIDE:Q47W36
DNASU:3519560 GeneID:3519560 KEGG:cps:CPS_4337 PATRIC:21471519
OMA:EGEPLEN BioCyc:CPSY167879:GI48-4346-MONOMER Uniprot:Q47W36
Length = 71
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M +I+V+ENEPF+VA+RRFKR+ EK G+L+++R RE YEKPT RKRK AAA+KR K++
Sbjct: 1 MPVIKVRENEPFDVALRRFKRSCEKAGILSEVRRRESYEKPTWERKRKKAAAVKRAAKKV 60
Query: 61 RSQQLPK-KMY 70
+ + +MY
Sbjct: 61 SRENARRVRMY 71
>TIGR_CMR|CBU_1593 [details] [associations]
symbol:CBU_1593 "ribosomal protein S21" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR001911 Pfam:PF01165
PRINTS:PR00976 ProDom:PD005521 PROSITE:PS01181 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
eggNOG:COG0828 KO:K02970 ProtClustDB:PRK00270 HAMAP:MF_00358
TIGRFAMs:TIGR00030 HOGENOM:HOG000157460 RefSeq:NP_820576.2
ProteinModelPortal:Q83BB9 SMR:Q83BB9 GeneID:1209503
KEGG:cbu:CBU_1593 PATRIC:17931951 OMA:SHELGVN
BioCyc:CBUR227377:GJ7S-1572-MONOMER Uniprot:Q83BB9
Length = 74
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/64 (54%), Positives = 49/64 (76%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M +I V +N F+VA+RRFKR EK G+L+ LR E+YEKPT+ RKRK AAA+KR+ K++
Sbjct: 1 MPMIDVPDNNAFDVAMRRFKRACEKAGILSKLRQIEYYEKPTSKRKRKRAAAVKRYAKKL 60
Query: 61 RSQQ 64
+ +Q
Sbjct: 61 QKEQ 64
>TIGR_CMR|GSU_3093 [details] [associations]
symbol:GSU_3093 "ribosomal protein S21" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR001911
Pfam:PF01165 PRINTS:PR00976 ProDom:PD005521 PROSITE:PS01181
GO:GO:0006412 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 eggNOG:COG0828 KO:K02970 ProtClustDB:PRK00270
HAMAP:MF_00358 TIGRFAMs:TIGR00030 RefSeq:NP_954134.1
ProteinModelPortal:Q748B4 SMR:Q748B4 DNASU:2686484 GeneID:2686484
KEGG:gsu:GSU3093 PATRIC:22029041 HOGENOM:HOG000157460 OMA:EKPSIKR
BioCyc:GSUL243231:GH27-3067-MONOMER Uniprot:Q748B4
Length = 65
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 29/58 (50%), Positives = 43/58 (74%)
Query: 4 IRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRIR 61
++VKE E FE+A+++FK+ EK G+L+++R RE YEKP+ RK+K AA KR K+ R
Sbjct: 4 VKVKETESFELALKKFKKQCEKAGILSEVRKREHYEKPSIKRKKKAIAARKRAMKKQR 61
>TIGR_CMR|BA_4534 [details] [associations]
symbol:BA_4534 "ribosomal protein S21" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001911 InterPro:IPR018278 Pfam:PF01165 PRINTS:PR00976
ProDom:PD005521 PROSITE:PS01181 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0828 KO:K02970 ProtClustDB:PRK00270 HAMAP:MF_00358
TIGRFAMs:TIGR00030 HOGENOM:HOG000157460 OMA:EKPSIKR
RefSeq:NP_846757.1 RefSeq:YP_021180.1 RefSeq:YP_030456.1
ProteinModelPortal:Q81LS7 SMR:Q81LS7 DNASU:1088263
EnsemblBacteria:EBBACT00000010194 EnsemblBacteria:EBBACT00000016604
EnsemblBacteria:EBBACT00000019899 GeneID:1088263 GeneID:2819008
GeneID:2848050 KEGG:ban:BA_4534 KEGG:bar:GBAA_4534 KEGG:bat:BAS4208
BioCyc:BANT260799:GJAJ-4264-MONOMER
BioCyc:BANT261594:GJ7F-4410-MONOMER Uniprot:Q81LS7
Length = 57
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 29/52 (55%), Positives = 38/52 (73%)
Query: 6 VKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHY 57
V++NE E A+RRFKR++ KTG L + R REFYEKP+ RK+K AA KR +
Sbjct: 6 VRKNESLEDALRRFKRSVSKTGTLAEARKREFYEKPSVKRKKKSEAARKRKF 57
>TIGR_CMR|CHY_0421 [details] [associations]
symbol:CHY_0421 "ribosomal protein S21" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR001911 InterPro:IPR018278 Pfam:PF01165
PRINTS:PR00976 ProDom:PD005521 PROSITE:PS01181 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0828 KO:K02970 HAMAP:MF_00358 TIGRFAMs:TIGR00030
HOGENOM:HOG000157460 RefSeq:YP_359282.1 ProteinModelPortal:Q3AF02
STRING:Q3AF02 GeneID:3728452 KEGG:chy:CHY_0421 PATRIC:21274003
OMA:WERKRKA BioCyc:CHYD246194:GJCN-422-MONOMER Uniprot:Q3AF02
Length = 59
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKR 55
M +RV +NE + A+RRFKR+ +K GL+ ++R RE YEKP+ RK+K A K+
Sbjct: 1 MAEVRVGKNESLDSALRRFKRSCQKAGLMAEMRKREHYEKPSVRRKKKAQARNKK 55
>TIGR_CMR|CJE_0419 [details] [associations]
symbol:CJE_0419 "ribosomal protein S21" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR001911 Pfam:PF01165 PRINTS:PR00976
ProDom:PD005521 PROSITE:PS01181 GO:GO:0006412 GO:GO:0005840
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735
eggNOG:COG0828 KO:K02970 ProtClustDB:PRK00270 HAMAP:MF_00358
TIGRFAMs:TIGR00030 HOGENOM:HOG000157460 RefSeq:YP_178438.1
ProteinModelPortal:Q5HW97 STRING:Q5HW97 GeneID:3231181
KEGG:cjr:CJE0419 PATRIC:20042538 OMA:IASRKKM
BioCyc:CJEJ195099:GJC0-424-MONOMER Uniprot:Q5HW97
Length = 70
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 22/57 (38%), Positives = 40/57 (70%)
Query: 4 IRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
I+V NE F+ A R+FK+ +++ ++T++RAR F+E T +RK++ +A K+ KR+
Sbjct: 4 IKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEIRKKQKISARKKMLKRL 60
>TIGR_CMR|DET_0350 [details] [associations]
symbol:DET_0350 "ribosomal protein S21" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR001911 Pfam:PF01165 PRINTS:PR00976 PROSITE:PS01181
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR KO:K02970 ProtClustDB:PRK00270
HAMAP:MF_00358 TIGRFAMs:TIGR00030 HOGENOM:HOG000157460 OMA:EGEPLEN
RefSeq:YP_181097.1 ProteinModelPortal:Q3Z9K2 STRING:Q3Z9K2
GeneID:3230359 KEGG:det:DET0350 PATRIC:21607769 eggNOG:NOG78573
BioCyc:DETH243164:GJNF-350-MONOMER Uniprot:Q3Z9K2
Length = 64
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M +R + NE FE ++RF R +++ G+L++ R R +E+P T RKRK AA + K
Sbjct: 1 MADVRPENNESFESMLKRFNRKVQQDGILSEARRRTRFERPPTRRKRKDAAKRRLAIKAA 60
Query: 61 R 61
R
Sbjct: 61 R 61
>TAIR|locus:2095143 [details] [associations]
symbol:GHS1 "GLUCOSE HYPERSENSITIVE 1" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0042254 "ribosome biogenesis" evidence=ISS]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] InterPro:IPR001911 Pfam:PF01165
PRINTS:PR00976 ProDom:PD005521 GO:GO:0009570 EMBL:CP002686
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0009534
EMBL:AP001312 HAMAP:MF_00358 TIGRFAMs:TIGR00030 IPI:IPI00527934
RefSeq:NP_566809.1 UniGene:At.25259 ProteinModelPortal:Q9LI88
SMR:Q9LI88 STRING:Q9LI88 PRIDE:Q9LI88 EnsemblPlants:AT3G27160.1
GeneID:822335 KEGG:ath:AT3G27160 TAIR:At3g27160 InParanoid:Q9LI88
OMA:NDLAIES PhylomeDB:Q9LI88 ProtClustDB:CLSN2688823
Genevestigator:Q9LI88 Uniprot:Q9LI88
Length = 183
Score = 96 (38.9 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 6 VKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKR 59
V++NE E + RF+R + +TG++ + + R ++E +KR+ A KR+ KR
Sbjct: 91 VEDNESEERLVNRFRREVMRTGVIQECKRRRYFENKQDEKKRRTRDAAKRNKKR 144
>TIGR_CMR|SPO_0229 [details] [associations]
symbol:SPO_0229 "ribosomal protein S21" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR001911
InterPro:IPR018278 Pfam:PF01165 ProDom:PD005521 PROSITE:PS01181
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:COG0828 HOGENOM:HOG000157459 KO:K02970
ProtClustDB:PRK00270 HAMAP:MF_00358 TIGRFAMs:TIGR00030
RefSeq:YP_165498.1 ProteinModelPortal:Q5LX29 DNASU:3196118
GeneID:3196118 KEGG:sil:SPO0229 PATRIC:23373709 OMA:EMKLRRH
Uniprot:Q5LX29
Length = 68
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 16/60 (26%), Positives = 37/60 (61%)
Query: 4 IRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRIRSQ 63
+ V++N + A+R K+ +++ G+ +++ ++ +EKP+ + R+ A AI+R K R +
Sbjct: 3 VSVRDNN-VDQALRALKKKLQREGVFREMKLKQHFEKPSEKKAREKAEAIRRARKLARKK 61
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.136 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 70 70 0.00091 102 3 10 22 0.39 28
29 0.41 29
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 474 (50 KB)
Total size of DFA: 95 KB (2070 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 11.50u 0.10s 11.60t Elapsed: 00:00:02
Total cpu time: 11.50u 0.10s 11.60t Elapsed: 00:00:03
Start: Thu Aug 15 16:25:14 2013 End: Thu Aug 15 16:25:17 2013