RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15221
(70 letters)
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 66.8 bits (164), Expect = 7e-17
Identities = 34/64 (53%), Positives = 47/64 (73%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M ++V+ENE + A+RRFKR +EK G+L +LR REFYEKP+ RKRK AAA KR K++
Sbjct: 1 MPQVKVRENESIDKALRRFKRKVEKAGILRELRRREFYEKPSEKRKRKKAAARKRRRKKL 60
Query: 61 RSQQ 64
++
Sbjct: 61 AREE 64
>gnl|CDD|223898 COG0828, RpsU, Ribosomal protein S21 [Translation, ribosomal
structure and biogenesis].
Length = 67
Score = 55.4 bits (134), Expect = 2e-12
Identities = 36/64 (56%), Positives = 50/64 (78%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
M ++V+ENEP + A+RRFKR +EK G+L +++ REFYEKP+ RKRK AAA KR +KR+
Sbjct: 1 MPQVKVRENEPLDKALRRFKRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRL 60
Query: 61 RSQQ 64
R +Q
Sbjct: 61 RKEQ 64
>gnl|CDD|201634 pfam01165, Ribosomal_S21, Ribosomal protein S21.
Length = 53
Score = 52.5 bits (127), Expect = 2e-11
Identities = 29/51 (56%), Positives = 37/51 (72%)
Query: 4 IRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIK 54
++VKENE E A+RRFKR +EK G+L +LR R FYEKP+ RKRK A +
Sbjct: 3 VKVKENENIERALRRFKRKVEKNGILRELRRRRFYEKPSEKRKRKKREARR 53
>gnl|CDD|129141 TIGR00030, S21p, ribosomal protein S21. This model describes
bacterial ribosomal protein S21 and most mitochondrial
and chloroplast equivalents [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 58
Score = 49.6 bits (119), Expect = 3e-10
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 2 TIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKR 59
++VKE E + A+RRFKR +EK G+L +L+ R +YEKP+ R+RK AA KR K+
Sbjct: 1 PTVKVKEGESIDSALRRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIRKK 58
>gnl|CDD|163705 cd00328, catalase, Catalase heme-binding enzyme. Catalase is a
ubiquitous enzyme found in both prokaryotes and
eukaryotes, which is involved in the protection of cells
from the toxic effects of peroxides. It catalyzes the
conversion of hydrogen peroxide to water and molecular
oxygen. Catalases also utilize hydrogen peroxide to
oxidize various substrates such as alcohol or phenols.
Most catalases exist as tetramers of 65KD subunits
containing a protoheme IX group buried deep inside the
structure. In eukaryotic cells, catalases are located in
peroxisomes.
Length = 433
Score = 29.0 bits (65), Expect = 0.14
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 34 AREFYEKPTTVRKRKLAAAIKRHYKRIRSQQLPKKMY 70
AR FY T ++++L A + S Q+ +++
Sbjct: 379 ARLFYRSLTPGQQKRLVDAFRFELADAVSPQIQQRVL 415
>gnl|CDD|234838 PRK00784, PRK00784, cobyric acid synthase; Provisional.
Length = 488
Score = 28.1 bits (64), Expect = 0.23
Identities = 6/35 (17%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 29 LTDLRAREFYEKPTTVRKRKLAAAIKRHYKRIRSQ 63
+ ++ AR++++ K +L A+ R+ ++
Sbjct: 96 VGNMDARDYHD-----YKPRLLEAVLESLDRLAAE 125
>gnl|CDD|164623 MTH00052, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 262
Score = 27.8 bits (62), Expect = 0.30
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 3 IIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTV 44
II K E AI T+ L T L+A E+YE P T+
Sbjct: 152 IISGKRKE----AIIGLALTVALGLLFTGLQAMEYYEAPFTI 189
>gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 408
Score = 26.4 bits (59), Expect = 0.97
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 46 KRKLAAAIKRHYKRIRSQQ 64
K+ L+ A+ HYKR+ +++
Sbjct: 70 KKVLSVAVYNHYKRLNNKE 88
>gnl|CDD|227096 COG4754, COG4754, Uncharacterized conserved protein [Function
unknown].
Length = 157
Score = 26.2 bits (58), Expect = 1.3
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 5 RVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKP 41
++K EPF +R IE+ + E Y P
Sbjct: 89 KLKNIEPFATHLRLRLDDIEEAMEVLFEEELETYNSP 125
>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX;
Provisional.
Length = 412
Score = 25.9 bits (58), Expect = 1.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 46 KRKLAAAIKRHYKRIRSQ 63
K+ L+ A+ HYKR+R
Sbjct: 80 KKVLSVAVYNHYKRLRHG 97
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 25.7 bits (56), Expect = 2.0
Identities = 9/33 (27%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 2 TIIRVKENEPFEVA-IRRFKRTIEKTGLLTDLR 33
T+I KE F + + ++KR +E++ ++ D++
Sbjct: 330 TVIAAKERADFSASSLAQYKRELEQSCVMRDMQ 362
>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer
membrane].
Length = 406
Score = 25.4 bits (56), Expect = 2.4
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVR 45
+TI+R +PF V + R + +E D+ A+E E+ R
Sbjct: 166 LTILRAGGGKPFTVTLTREEIELE------DVAAKEKVEEGGKGR 204
>gnl|CDD|227267 COG4930, COG4930, Predicted ATP-dependent Lon-type protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 683
Score = 25.7 bits (56), Expect = 2.6
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 27 GLLTDLRAREFYEKPTTVRKRKLAAAIKRHYK 58
G+++D A E +RKR L+ I R K
Sbjct: 379 GVISDYFAEALRE----MRKRSLSDLIGRFVK 406
>gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit
(clpX). A member of the ATP-dependent proteases, ClpX
has ATP-dependent chaperone activity and is required for
specific ATP-dependent proteolytic activities expressed
by ClpPX. The gene is also found to be involved in
stress tolerance in Bacillus subtilis and is essential
for the efficient acquisition of genes specifying type
IA and IB restriction [Protein fate, Protein folding and
stabilization, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 413
Score = 25.1 bits (55), Expect = 3.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 46 KRKLAAAIKRHYKRIRSQQLPK 67
K+ L+ A+ HYKR+ ++ K
Sbjct: 86 KKVLSVAVYNHYKRLNFEKNKK 107
>gnl|CDD|218628 pfam05541, Spheroidin, Entomopoxvirus spheroidin protein.
Entomopoxviruses (EPVs) are large (300-400 nm)
oval-shaped viruses replicating in the cytoplasm of
their insect host cells. At the end of their replicative
cycle EPVs virions are occluded in a highly expressed
protein called spheroidin. This protein forms large
(5-20 mm long) oval-shaped occlusion bodies (OBs) called
spherules. The infectious cycle of EPVs begins with the
ingestion by the insect host of the spherules, their
dissolution by the alkaline reducing conditions of the
midgut fluid and the release of virions in the midgut
lumen. The infective particles first replicate in midgut
epithelial cells, then pass the gut barrier to colonise
the internal tissues, mainly the fat body cells. Whilst
spheroidin has been demonstrated to be non-essential for
viral replication, it plays an essential role in the
natural biological cycle of the virus in protecting
virions from adverse environmental conditions (e.g. UV
degradation) and thus improving transmission efficacy.
In this respect, spheroidins are functionally similar to
polyhedrins of baculoviruses or cypoviruses.
Length = 943
Score = 24.8 bits (54), Expect = 4.4
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 16 IRRFKRTIEKTGLLTDLRAREFYEKP 41
++FK+ K L ++ R+F + P
Sbjct: 688 DKKFKKLFLKNKLKELMKDRDFVQPP 713
>gnl|CDD|215957 pfam00506, Flu_NP, Influenza virus nucleoprotein.
Length = 506
Score = 24.5 bits (53), Expect = 4.9
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 15 AIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKR 55
AIR KR I L R R YE+ + K K A +R
Sbjct: 201 AIRMIKRGINDRNFLRGRRTRIAYERMCNILKGKFQTAAQR 241
>gnl|CDD|219276 pfam07035, Mic1, Colon cancer-associated protein Mic1-like. This
family represents the C-terminus (approximately 160
residues) of a number of proteins that resemble colon
cancer-associated protein Mic1.
Length = 167
Score = 24.0 bits (52), Expect = 6.4
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 21 RTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHY 57
R K L D+ AR+F E R+ AI R +
Sbjct: 110 RFARKVRGLNDVLARKFLEAANQTNDRQTFYAILRFF 146
>gnl|CDD|218128 pfam04523, Herpes_U30, Herpes virus tegument protein U30. This
family is named after the human herpesvirus protein, but
has been characterized in cytomegalovirus as UL47.
Cytomegalovirus UL47 is a component of the tegument,
which is a protein layer surrounding the viral capsid.
UL47 co-precipitates with UL48 and UL69 tegument
proteins, and the major capsid protein UL86. A
UL47-containing complex is thought to be involved in the
release of viral DNA from the disassembling virus
particle.
Length = 883
Score = 23.8 bits (52), Expect = 9.9
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 3 IIRVKENEPFEVAIRRFKRTIEK 25
I V + V++ FK TI+
Sbjct: 682 EIPVGGEKVLSVSLPTFKSTIQA 704
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.136 0.374
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,728,822
Number of extensions: 295542
Number of successful extensions: 543
Number of sequences better than 10.0: 1
Number of HSP's gapped: 543
Number of HSP's successfully gapped: 30
Length of query: 70
Length of database: 10,937,602
Length adjustment: 40
Effective length of query: 30
Effective length of database: 9,163,442
Effective search space: 274903260
Effective search space used: 274903260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)