RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15221
         (70 letters)



>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase,
          C-terminal domain {Pseudomonas cepacia, db01 [TaxId:
          292]}
          Length = 98

 Score = 25.6 bits (56), Expect = 0.39
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 8  ENEPFEVAIRRFKRTIE 24
          EN PF V + R   + E
Sbjct: 11 ENTPFTVRLSRSGTSFE 27


>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon
          Pyrococcus furiosus [TaxId: 2261]}
          Length = 178

 Score = 25.7 bits (56), Expect = 0.41
 Identities = 4/25 (16%), Positives = 12/25 (48%)

Query: 11 PFEVAIRRFKRTIEKTGLLTDLRAR 35
          P+E+ I++ +R  +   +  +    
Sbjct: 3  PYEIVIKQLERAAQYMEISEEALEF 27


>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
          Length = 309

 Score = 25.6 bits (55), Expect = 0.54
 Identities = 6/23 (26%), Positives = 15/23 (65%)

Query: 46 KRKLAAAIKRHYKRIRSQQLPKK 68
          KR +A A++  ++R++ Q+  + 
Sbjct: 23 KRAVAIALRNRWRRMQLQEPLRH 45


>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3
           and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 189

 Score = 24.8 bits (53), Expect = 1.1
 Identities = 7/39 (17%), Positives = 16/39 (41%)

Query: 28  LLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRIRSQQLP 66
           L         YE    V + ++A  + +   ++ S ++P
Sbjct: 141 LFAVYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVP 179


>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
          Length = 364

 Score = 24.8 bits (53), Expect = 1.1
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query: 46 KRKLAAAIKRHYKRIRSQQ 64
          K+  + A+  HYKR+  ++
Sbjct: 26 KKVFSVAVYNHYKRLSFKE 44


>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
          Length = 443

 Score = 23.9 bits (51), Expect = 2.0
 Identities = 6/19 (31%), Positives = 14/19 (73%)

Query: 46 KRKLAAAIKRHYKRIRSQQ 64
          KR +A A++  ++R++ Q+
Sbjct: 23 KRAVAIALRNRWRRMQLQE 41


>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
           [TaxId: 562]}
          Length = 571

 Score = 23.8 bits (51), Expect = 2.2
 Identities = 4/37 (10%), Positives = 13/37 (35%)

Query: 34  AREFYEKPTTVRKRKLAAAIKRHYKRIRSQQLPKKMY 70
            R F+   T   +R +         ++    + +++ 
Sbjct: 482 PRLFWLSQTPFEQRHIVDGFSFELSKVVRPYIRERVV 518


>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga
          maritima [TaxId: 2336]}
          Length = 175

 Score = 23.3 bits (50), Expect = 2.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 12 FEVAIRRFKRTIEKTGLLTDLRAR 35
          +E+A+ +F R      L +DL   
Sbjct: 3  YEMAVEQFNRAASLMDLESDLAEV 26


>d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId:
           1351]}
          Length = 474

 Score = 23.3 bits (50), Expect = 3.3
 Identities = 6/37 (16%), Positives = 14/37 (37%)

Query: 34  AREFYEKPTTVRKRKLAAAIKRHYKRIRSQQLPKKMY 70
           A   Y    +  K  L   I     ++++Q++  +  
Sbjct: 417 ANALYNLLPSEEKENLINNIAASLGQVKNQEIIARQI 453


>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II,
           domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 183

 Score = 22.9 bits (48), Expect = 4.3
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 31  DLRAREFYEKPTTVRKRKLAAAIKRHYKRIRSQQLPKKM 69
                  +E   TV   + A  + + Y ++RS +L   M
Sbjct: 136 TFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLVGGM 174


>d2iqha1 e.75.1.1 (A:21-489) Nucleocapsid protein {Influenza A virus
           [TaxId: 11320]}
          Length = 469

 Score = 23.0 bits (49), Expect = 4.4
 Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 15  AIRRFKRTIEKTGLL---TDLRAREFYEKPTTVRKRKLAAAIKR 55
            IR  KR I            R R  YE+   + K K   A +R
Sbjct: 173 LIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQR 216


>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
          modules {Escherichia coli [TaxId: 562]}
          Length = 315

 Score = 22.5 bits (47), Expect = 6.8
 Identities = 5/22 (22%), Positives = 7/22 (31%)

Query: 46 KRKLAAAIKRHYKRIRSQQLPK 67
             L  AIK     +  +  P 
Sbjct: 31 IEALTEAIKMARAGLGHEHKPV 52


>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 153

 Score = 21.9 bits (45), Expect = 8.6
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 28  LLTDLRAREFYEKPTTVRKRKLAAAIKRHYK 58
              D R  E YE  + +++  +A  + R Y+
Sbjct: 123 YYRDARITEIYEGTSEIQRLVIAGHLLRSYR 153


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.136    0.374 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 266,686
Number of extensions: 10804
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 21
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)