BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15222
(444 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|340786216|ref|YP_004751681.1| DNA primase [Collimonas fungivorans Ter331]
gi|340551483|gb|AEK60858.1| DNA primase [Collimonas fungivorans Ter331]
Length = 598
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/440 (43%), Positives = 292/440 (66%), Gaps = 11/440 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A DFY+ L+++ A+++LK+RGL E+ +F LGY+P+ W++L +VF DY L
Sbjct: 120 MSAACDFYRQHLRSAPNAVDYLKRRGLTGEVAAKFGLGYSPDNWDSLRQVFPDYE-ATAL 178
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+D+ + N KRYDRFR RIMFPI+NT GQ+IGFGGR++ DS E KY
Sbjct: 179 VESGLVIDRTDEEGN------NRKRYDRFRDRIMFPIRNTKGQVIGFGGRVL-DSGEPKY 231
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K +ELYGLFEA+ AI +GYVL+TEGYMDV+ L+Q GF Q VA LGTACT
Sbjct: 232 LNSPETPLFQKGSELYGLFEARQAIRDAGYVLVTEGYMDVVALAQLGFPQAVATLGTACT 291
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
TH+ K+L T+ ++FSFDGD+AGR+AARRAL+ CL +ATD+K+IKFLFLP ++DPDS++
Sbjct: 292 PTHVHKLLRQTDHVVFSFDGDRAGRKAARRALDACLPHATDNKVIKFLFLPQEHDPDSFV 351
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+ G + F +++ +AM L QF L E+ +L T + +++Y+ + L +++P SSLR
Sbjct: 352 REMGAEAFERQIHDAMPLSQFLLNEVTAEADLSTSEGRARAQYDAKPLMQLMP-PSSLRL 410
Query: 301 KIISSLSKIIKVSFNEINNLFKINT--SSIKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+I+ L+++ + + NEI +LF++ +S + P+ +E QI++LL+++P+
Sbjct: 411 QIVRGLAQLTQSTPNEIESLFELAKPIASARRAPPRSNRPPPVGLERQIIRLLVAHPAFA 470
Query: 359 NEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQ 418
+E++ + + + + +M +LI H + + ++L++ ++FES+I +I
Sbjct: 471 SELDDAALDAVAHFAPDRAEMLARLITASHAMGEQANFATLAEHLREGGEDFESLIAEIA 530
Query: 419 DNFEYSIEIAKKTLLDAIYK 438
E E A+ L AI +
Sbjct: 531 AESESETEAARLELAGAIRQ 550
>gi|399017720|ref|ZP_10719909.1| DNA primase, catalytic core [Herbaspirillum sp. CF444]
gi|398102487|gb|EJL92667.1| DNA primase, catalytic core [Herbaspirillum sp. CF444]
Length = 602
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/443 (42%), Positives = 295/443 (66%), Gaps = 11/443 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A DFY+ QL+ + +A+ +LK RGL EI +F LGY+P+EW++L KVF DY + L
Sbjct: 120 MSAACDFYRQQLRAAPQAVEYLKGRGLTGEIAAKFGLGYSPDEWDSLRKVFPDYE-VPAL 178
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+DK + Q KRYDRFR R+MFPI+NT GQ+IGFGGR++ D E KY
Sbjct: 179 VEAGLVIDKSEEEGAQR---MGRKRYDRFRHRVMFPIRNTKGQVIGFGGRVM-DGGEPKY 234
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K +ELYGLFEA+ AI ++GYVL+TEGYMDV+ L+Q GF Q VA LGTACT
Sbjct: 235 LNSPETPLFQKGSELYGLFEARQAIREAGYVLVTEGYMDVVALAQLGFPQAVATLGTACT 294
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+ ++FSFDGD AGRRAARRAL+ CL++A+D+KIIKFLFLP ++DPDSY+
Sbjct: 295 PIHVQKLLRQTDEVVFSFDGDSAGRRAARRALDACLVHASDNKIIKFLFLPTEHDPDSYV 354
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+ G F +++ EAM L QF ++E++ + ++ T + +++++ + + + +P SSLR
Sbjct: 355 REMGAAAFEQQIKEAMPLSQFLIKEVVGDNDMGTPEGRARAQFDAKPMLQALP-PSSLRL 413
Query: 301 KIISSLSKIIKVSFNEINNLFK-----INTSSIKHKTIEKKNIQPICIEYQIMKLLISYP 355
+I+ SL+++ + S EI LF+ + TS+ + + K + P+ +E QI++LL+++P
Sbjct: 414 QIVRSLAQVTQTSPAEIEALFELAKPVVQTSARRAPPPKSKRMAPVGLERQIIRLLVAHP 473
Query: 356 SLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIV 415
+L +++ + + + + M +L++ + + ++ L+ +FES+I
Sbjct: 474 ALAADLDDTALQAIGRHAPDRADMLSRLVEACRSMGEQANFATLVEQLRDAGPDFESLIA 533
Query: 416 KIQDNFEYSIEIAKKTLLDAIYK 438
+I E ++ ++ + A+ +
Sbjct: 534 EIAAETESEFDVVRQEMAGAVRQ 556
>gi|300310202|ref|YP_003774294.1| DNA primase [Herbaspirillum seropedicae SmR1]
gi|300072987|gb|ADJ62386.1| DNA primase protein [Herbaspirillum seropedicae SmR1]
Length = 598
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/442 (42%), Positives = 289/442 (65%), Gaps = 11/442 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+DFY+ QL++++ AI +LK RGL EI RF LGY+P+EW++L +VF DY+N L
Sbjct: 120 MTRANDFYRHQLRSAQPAIAYLKGRGLTGEIAARFGLGYSPDEWDSLRQVFPDYDN-EAL 178
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+DK KRYDRFRGRIMFPI+NT GQ+IGFGGR++ D E KY
Sbjct: 179 VESGLVIDKSEEGGAHR------KRYDRFRGRIMFPIRNTKGQVIGFGGRVM-DGGEPKY 231
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K +ELYGLFEA+ AI ++GY L+TEGYMDV+ L+Q GF Q VA LGTACT
Sbjct: 232 LNSPETPLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACT 291
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K++ T+ +IFSFDGD AGRRAARRALE CL +A+D+K IKFLFLP ++DPDSY+
Sbjct: 292 PIHVQKLVRQTDQVIFSFDGDNAGRRAARRALEACLPHASDNKTIKFLFLPKEHDPDSYV 351
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+ G F +++ EA+ L QF L EII +L+T + +++ + L + +P +S+LR
Sbjct: 352 REMGAPAFEEQIREALPLSQFLLREIIGENDLRTPEGRAHAQFAAKPLLQALP-ASALRL 410
Query: 301 KIISSLSKIIKVSFNEINNLFKIN--TSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+I+ S+++ + + E+ LF++ + ++ K P+ +E QIM+LL+++P L
Sbjct: 411 QIVRSVAQATQSTPAELEVLFELEKPVARVRAAPARSKRTAPVGLERQIMRLLVAHPQLA 470
Query: 359 NEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQ 418
++++ + ++ + + +M L+ + + +++L++ F+S+I +I
Sbjct: 471 ADLDAGALEAIARIAPDQAEMLTHLVGVAQGMGEQANFAALVEHLREGGPEFDSMIAEIA 530
Query: 419 DNFEYSIEIAKKTLLDAIYKDR 440
E ++ + + AI + R
Sbjct: 531 AESESEFDVVRAEMGGAIRQAR 552
>gi|409404649|ref|ZP_11253128.1| DNA primase [Herbaspirillum sp. GW103]
gi|386436168|gb|EIJ48991.1| DNA primase [Herbaspirillum sp. GW103]
Length = 598
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/442 (43%), Positives = 289/442 (65%), Gaps = 11/442 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+DFY+ QL++++ AI +LK RGL EI RF LGY+P+EW++L +VF DY N L
Sbjct: 120 MTRANDFYRHQLRSAQPAIGYLKGRGLTGEIAARFGLGYSPDEWDSLRQVFPDYEN-EVL 178
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+DK KRYDRFRGRIMFPI+NT GQ+IGFGGR++ D E KY
Sbjct: 179 VESGLVIDKSEEGGGHR------KRYDRFRGRIMFPIRNTKGQVIGFGGRVM-DGGEPKY 231
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K +ELYGLFEA+ AI ++GYVL+TEGYMDV+ L+Q GF Q VA LGTACT
Sbjct: 232 LNSPETPLFQKGSELYGLFEARQAIREAGYVLVTEGYMDVVALAQLGFPQAVATLGTACT 291
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K++ T+ +IFSFDGD AGRRAARRALE CL +A+D+K IKFLFLP ++DPDSY+
Sbjct: 292 PIHVQKLVRQTDQVIFSFDGDNAGRRAARRALEACLPHASDNKTIKFLFLPKEHDPDSYV 351
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+ G F +++ EA+ L QF L+EII +L+T + +++ + L + +P +S LR
Sbjct: 352 REMGAPAFEEQIREALPLSQFLLKEIIGENDLRTPEGRAHAQFAAKPLLQALP-ASGLRL 410
Query: 301 KIISSLSKIIKVSFNEINNLFKIN--TSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+I+ S+++ + + E+ LF++ + ++ K P+ +E QIM+LL+++P L
Sbjct: 411 QIVRSVAQATQTTPAELEVLFELEKPVARVRSAPPRSKRSAPLGLERQIMRLLVAHPQLS 470
Query: 359 NEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQ 418
++++ + ++ + + +M L+ + + +++L++ F+S+I +I
Sbjct: 471 ADLDAAALEAIARIAPDQAEMLAHLVGVAQSMGEQANFAALVEHLREGGPEFDSMIAEIA 530
Query: 419 DNFEYSIEIAKKTLLDAIYKDR 440
E ++ + + AI + R
Sbjct: 531 AESESEFDVVRAEMAGAIRQAR 552
>gi|152979908|ref|YP_001352182.1| DNA primase [Janthinobacterium sp. Marseille]
gi|151279985|gb|ABR88395.1| DNA primase [Janthinobacterium sp. Marseille]
Length = 599
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/440 (44%), Positives = 282/440 (64%), Gaps = 11/440 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL++++ A N+L RGL EI R+ +GYAP+ W+ L VF DY + L
Sbjct: 120 MTQACDYYRQQLRHAERAKNYLIGRGLTGEIAARYGMGYAPDGWDGLRSVFPDYE-VEAL 178
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+DK + KRYDRFR RIMFPI+NT GQ+IGFGGR++ D+ E KY
Sbjct: 179 VESGLVIDKAEEEGA------NRKRYDRFRDRIMFPIRNTKGQVIGFGGRVL-DNGEPKY 231
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K +ELYGLFEA+ AI ++GY L+TEGYMDV+ L+Q GF Q VA LGTACT
Sbjct: 232 LNSPETPLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACT 291
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+ +IFSFDGD+AGRRAARRALE L +A D+K+IKFLFLP ++DPDSYI
Sbjct: 292 PIHVQKLLRQTDQVIFSFDGDKAGRRAARRALEASLPHAGDNKVIKFLFLPSEHDPDSYI 351
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+ G + F K+V +AM L QF L+E + + +L T + +++++ + L + +P SSLR
Sbjct: 352 RELGTEAFEKQVQDAMPLSQFLLKEAVGDNDLGTPEGRARAQFDAKPLLQALP-PSSLRL 410
Query: 301 KIISSLSKIIKVSFNEINNLFKINT--SSIKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+I+ SL++I + + EI LF++ S ++ K P +E QIM+LL+S+P L
Sbjct: 411 QIVRSLAQITESTPAEIEALFELAQPISRVRAAPPRTKRAAPQGLERQIMRLLVSHPILA 470
Query: 359 NEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQ 418
E++ + I + + +M QL+ + + + L+ +FE +I +I
Sbjct: 471 AEMDQAALDIAAHFAPERAEMLVQLVTLSREMGPQANFAILAELLRSSGSDFEPLIAEIA 530
Query: 419 DNFEYSIEIAKKTLLDAIYK 438
E + +A+ L AI +
Sbjct: 531 AEPESDVALARLELAGAIRQ 550
>gi|398836333|ref|ZP_10593670.1| DNA primase, catalytic core [Herbaspirillum sp. YR522]
gi|398211967|gb|EJM98578.1| DNA primase, catalytic core [Herbaspirillum sp. YR522]
Length = 599
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/441 (41%), Positives = 286/441 (64%), Gaps = 13/441 (2%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF--LDYNNINTLA 61
A+DFY+ QL+ ++ AI++LK RGL E+ RF LGY+P+EW+ L +VF DY+N L
Sbjct: 123 ANDFYRQQLRTAQPAIDYLKGRGLTGEVAARFGLGYSPDEWDGLRQVFKDRDYDN-EALV 181
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
SGL++DK KRYDRFRGR+MFPI+NT GQ+IGFGGR++ D E KY+
Sbjct: 182 ESGLLIDKSEEGGAHR------KRYDRFRGRVMFPIRNTKGQVIGFGGRVM-DGGEPKYL 234
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETPLF K +ELYGLFEA+ AI ++GY L+TEGYMDV+ L+Q GF Q VA LGTACT
Sbjct: 235 NSPETPLFSKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACTP 294
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H++K+L T+ +IFSFDGD AGRRAARRALE CL +A+D+K I+FLFLP ++DPDSY+R
Sbjct: 295 VHVQKLLRQTDQVIFSFDGDGAGRRAARRALEACLPHASDNKTIRFLFLPAEHDPDSYVR 354
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
+ G + F +++ EA+ L QF L EII +L T + +++ + + + +P +S+LR +
Sbjct: 355 EMGAEAFEQQIREALPLSQFLLREIIGENDLATPEGRAHAQFAAKPMLQALP-ASALRLQ 413
Query: 302 IISSLSKIIKVSFNEINNLFKIN--TSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLIN 359
I+ S++++ + + EI LF++ + ++ K K P+ +E QI++ L+++P L
Sbjct: 414 IVRSVAQVTQSTAAEIETLFELEKPVARVQAKAPRSKRTAPVGLERQIVRWLVAHPRLAG 473
Query: 360 EINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQD 419
+++ E + + + + +M L+ + + +++L++ F+S+I +I
Sbjct: 474 DLDDEALQAVASIAPDRAEMLGHLVGLVRSMGEQASFASLVEHLRESGPEFDSLIAEIAA 533
Query: 420 NFEYSIEIAKKTLLDAIYKDR 440
E + + L A+ + +
Sbjct: 534 ESESEFDAVRAELAGAVRQSK 554
>gi|134093712|ref|YP_001098787.1| DNA primase [Herminiimonas arsenicoxydans]
gi|133737615|emb|CAL60658.1| DNA primase [Herminiimonas arsenicoxydans]
Length = 602
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/437 (43%), Positives = 281/437 (64%), Gaps = 8/437 (1%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A DFY+ QL++++ A N+L RGL E+ R+ +GYAP+ W+ L VF DY ++ L
Sbjct: 123 ACDFYRQQLRHAEGAKNYLIGRGLTGEVAARYGMGYAPDGWDGLRAVFPDYE-LDALVEC 181
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+DK + + KRYDRFR RIMFPI+N+ GQ+IGFGGR++ D E KY+NS
Sbjct: 182 GLVIDKAEEEGADH---RQRKRYDRFRDRIMFPIRNSKGQVIGFGGRVMGD-GEPKYLNS 237
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETPLF K +ELYGLFEA+ AI ++GY L+TEGYMDV+ L+Q GF Q VA LGTACTS H
Sbjct: 238 PETPLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACTSIH 297
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+L T+ +IFSFDGD+AGRRAARRALE L YA D+K+IKFLFLP ++DPDSYIR
Sbjct: 298 VQKLLRQTDQVIFSFDGDKAGRRAARRALEASLPYAGDNKVIKFLFLPSEHDPDSYIRAM 357
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F K+V +AM L QF L+E + + +L T + +++++ + L + +P SSLR +I+
Sbjct: 358 GAESFEKQVQDAMPLSQFLLKEAVGDNDLGTPEGRARTQFDAKPLLQALP-PSSLRLQIV 416
Query: 304 SSLSKIIKVSFNEINNLFKI--NTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEI 361
L++I + + EI LF++ S ++ + K P+ +E QIM+LL+ +P L E+
Sbjct: 417 RGLAQITESTPAEIEALFELVQPISRVRAAPPKGKRTAPVGLERQIMRLLVEHPVLAAEL 476
Query: 362 NSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQDNF 421
+ + + + + M QL+ + + + L+ +F++++ +I
Sbjct: 477 DQAALDVAAHFAPERADMLVQLVTMSREMGVHANFATLAELLRSSGSDFDTLVAEIAAES 536
Query: 422 EYSIEIAKKTLLDAIYK 438
E ++ A+ L AI +
Sbjct: 537 ESDVDAARLELAGAIRQ 553
>gi|445499115|ref|ZP_21465970.1| DNA primase DnaG [Janthinobacterium sp. HH01]
gi|444789110|gb|ELX10658.1| DNA primase DnaG [Janthinobacterium sp. HH01]
Length = 589
Score = 363 bits (932), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 183/434 (42%), Positives = 278/434 (64%), Gaps = 11/434 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M AS+FY+ QL+ + +AI +LK RGL EI RF LGYAP W+ L +F DY + L
Sbjct: 111 MTRASEFYRSQLRGATDAIAYLKNRGLTGEIAARFGLGYAPPGWDNLRSIFPDYEAV-AL 169
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
A +GLV+DK+ KRYDRFR R+MFPIKNT GQ+I FGGR++ D E KY
Sbjct: 170 AEAGLVIDKVDEDGGNR------KRYDRFRERVMFPIKNTKGQVIAFGGRVL-DHGEPKY 222
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K ELYGLFEA+ AI +GYVL+TEGYMDV+ L+Q GF Q VA LGTACT
Sbjct: 223 LNSPETPLFSKGFELYGLFEARQAIRDAGYVLVTEGYMDVVALAQMGFPQAVATLGTACT 282
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ H++K+L T+++IFSFDGD+AGRRAARRALE CL + TD+K IKFLFLP ++DPDSY+
Sbjct: 283 THHVQKLLRQTDTVIFSFDGDKAGRRAARRALEACLPHVTDNKTIKFLFLPTEHDPDSYV 342
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R +G + F +++ EAM L QF ++E + ++L++ + +++++ + + + + +SLR
Sbjct: 343 RTYGNEAFEQEIHEAMPLSQFLVKEAVGEHDLQSPEGRARAQFDAKPMLQAM-TPTSLRL 401
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICI--EYQIMKLLISYPSLI 358
+I+ L+++ + + +EI LF++ + + +P+ + E QI+++L+++P L
Sbjct: 402 QIVRGLAQLTQSTPSEIEVLFELAKPVAVARQAPPRTGRPVPVGLELQIVRMLVAHPPLA 461
Query: 359 NEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQ 418
I+ M F+ + QL+ + + + F ++LK ++++I +I
Sbjct: 462 LHIDEAAMAAFNYFGAAPAERLVQLVASAQSMGPNGGFAAFAQHLKSQGDEYDALIGEIA 521
Query: 419 DNFEYSIEIAKKTL 432
E I+ + L
Sbjct: 522 KEPEADIDAVRMEL 535
>gi|427400731|ref|ZP_18891969.1| DNA primase [Massilia timonae CCUG 45783]
gi|425720244|gb|EKU83167.1| DNA primase [Massilia timonae CCUG 45783]
Length = 598
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 176/437 (40%), Positives = 281/437 (64%), Gaps = 11/437 (2%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A +FY+ QL+++ AI +LK RGL E+ RF +GYAP+ W++L +F DY+ + L S
Sbjct: 123 ACNFYRAQLRDAPNAIAYLKNRGLTGEVAARFGMGYAPSGWDSLRAIFPDYD-AHVLVES 181
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+DK+ + N +RYDRFR R+MFPI+NT GQ+IGFGGR++ D E KY+NS
Sbjct: 182 GLVIDKVDEQGNHQ------RRYDRFRERVMFPIRNTKGQVIGFGGRVL-DGGEPKYLNS 234
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETPLF K ELYGLFEA+ AI +GYVL+TEGYMDV+ L+Q GF Q VA LGTACT+TH
Sbjct: 235 PETPLFQKGLELYGLFEARQAIRDAGYVLVTEGYMDVVALAQLGFPQAVATLGTACTTTH 294
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+L T+ +IFSFDGD+AGRRAARRALE CL +DDK IKFLFLP ++DPDS++R+
Sbjct: 295 VQKLLRQTDDVIFSFDGDKAGRRAARRALEACLPQVSDDKTIKFLFLPQEHDPDSFVRER 354
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F +++ +AM L QF L E+ ++L T + +++ + L + + SSLR +I+
Sbjct: 355 GAEAFEQEIADAMPLSQFLLREVTQEHDLDTPEGRAHAQFEAKPLLQAM-TPSSLRLQIV 413
Query: 304 SSLSKIIKVSFNEINNLFKIN--TSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEI 361
L+ + + + EI +LF+++ ++ + + +P+ +E +++++L+++P L +
Sbjct: 414 RGLASMTQSTPAEIESLFELSKPVATARRAPPRQGRPEPVGLELKMLRILVAHPHLALLL 473
Query: 362 NSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQDNF 421
+ + + F + L++T + + L+++ ++++I +I
Sbjct: 474 DEQALQAFDYFGEESSDRLRHLVETAQALGEHGTFAALSQQLREVTNEYDAMIAEIAAEP 533
Query: 422 EYSIEIAKKTLLDAIYK 438
E ++ + LL ++ +
Sbjct: 534 ENEVDGDRIVLLSSVRQ 550
>gi|395763825|ref|ZP_10444494.1| DNA primase [Janthinobacterium lividum PAMC 25724]
Length = 589
Score = 360 bits (925), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 185/424 (43%), Positives = 269/424 (63%), Gaps = 11/424 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+++ EAI +LK RGL E+ RF +G+AP W+ L VF DY+ + L
Sbjct: 111 MTQACDYYRGQLRHAPEAIAYLKNRGLTGEVAARFGMGFAPGGWDNLRSVFPDYDVV-AL 169
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+DK+ N KRYDRFR RIMFPI+NT GQ+I FGGR++ D E KY
Sbjct: 170 VEAGLVIDKVDEDGNNR------KRYDRFRERIMFPIRNTKGQVIAFGGRVL-DHGEPKY 222
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K ELYGLFEA+ AI +GYVL+TEGYMDV+ L+Q GF Q VA LGTACT
Sbjct: 223 LNSPETPLFSKGFELYGLFEARQAIRDAGYVLVTEGYMDVVALAQMGFPQAVATLGTACT 282
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
TH++K+L T+S+IFSFDGD+AGRRAARRALE L + +D+K IKFLFLP ++DPDSYI
Sbjct: 283 PTHVQKLLRQTDSVIFSFDGDKAGRRAARRALEASLAHVSDNKTIKFLFLPSEHDPDSYI 342
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + F ++V EAM L QF L+E+ ++L + + +++ + L +++ SSLR
Sbjct: 343 REFGAEGFEQQVHEAMPLSQFLLKEVSGEHDLSEPEGRARVQFDAKPLLQLM-APSSLRL 401
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICI--EYQIMKLLISYPSLI 358
+I+ L+++ + + EI LF++ + K+ +P+ + E +IM++L+++P L
Sbjct: 402 QIVRGLAQLTQSTPAEIEALFELAKPVAVARRAPPKSGRPVPVGLELKIMRMLVAHPPLT 461
Query: 359 NEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQ 418
I+ + F + QL+ + + LK++ ++ II +I
Sbjct: 462 MRIDEAALTAFQHLGPDAAHSLGQLVAVGQALGEHGSFAALAQQLKELGSEYDEIIGEIA 521
Query: 419 DNFE 422
E
Sbjct: 522 AGTE 525
>gi|329906287|ref|ZP_08274383.1| DNA primase [Oxalobacteraceae bacterium IMCC9480]
gi|327547307|gb|EGF32146.1| DNA primase [Oxalobacteraceae bacterium IMCC9480]
Length = 598
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 185/446 (41%), Positives = 277/446 (62%), Gaps = 11/446 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D Y++QL+ ++ A +L RGL EI RF +GYAP W++L VF DY + L
Sbjct: 120 MTQACDHYRLQLRTAERAKGYLIGRGLTGEIAARFGIGYAPEGWDSLRSVFPDYE-LTAL 178
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+D+ + KRYDRFR RIMFPI+NT GQ+IGFGGR++ DS E KY
Sbjct: 179 VEAGLVIDRTDEEGGNR------KRYDRFRDRIMFPIRNTKGQVIGFGGRIL-DSGEPKY 231
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K +ELYGLFEA+ AI +GYVL+TEGYMDV+ L+Q GF Q VA LGTACT
Sbjct: 232 LNSPETPLFQKGSELYGLFEARQAIRDAGYVLVTEGYMDVVALAQLGFPQVVATLGTACT 291
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ H++K+ T+ +IFSFDGD AGRRAARRALE L YA D+K IKFLFLP ++DPDSY+
Sbjct: 292 AVHVQKLSRQTDHVIFSFDGDGAGRRAARRALEASLPYAADNKTIKFLFLPSEHDPDSYV 351
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+ G F ++V +AM L QF L+ + + +L T + K +++ + L + +P +SSLR
Sbjct: 352 REHGTAGFEQQVRDAMPLSQFLLKVVTDDNDLTTSEGRAKVQFDAKPLLQAMP-ASSLRL 410
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSS--IKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+I+ L+++ + + EI LF++ + + ++ K P+ +E Q+M+LL+++P L
Sbjct: 411 QIVRELAQLTRTTPTEIETLFELASPAARVRAAPPRGKRTAPVGLELQVMRLLVAHPVLA 470
Query: 359 NEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQ 418
+E++ + + + M QL+ + ++L+ F+ +I ++
Sbjct: 471 SELDQDALDAMLHFVPDSAVMLMQLVVAGQEMGAQASFAMLSEHLRAGGPEFDGMIAEVA 530
Query: 419 DNFEYSIEIAKKTLLDAIYKDRKSVV 444
E + A+ L A+ + + V+
Sbjct: 531 AEPESDRDAARLELAGAVRQTKMKVL 556
>gi|237746701|ref|ZP_04577181.1| DNA primase [Oxalobacter formigenes HOxBLS]
gi|229378052|gb|EEO28143.1| DNA primase [Oxalobacter formigenes HOxBLS]
Length = 603
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 173/446 (38%), Positives = 273/446 (61%), Gaps = 9/446 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M AS +Y+ QLK S+ AI +LKKRG++ E+ RF LGYAP ++L F +Y + L
Sbjct: 120 MTQASRYYRQQLKQSEAAIAYLKKRGVSGEMAFRFGLGYAPATRDSLKNGFENYR-ADEL 178
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV++K + V+ +RYDRFR RIMFPI+NT GQ+I FGGR++ + E KY
Sbjct: 179 VEAGLVIEK---HEDDRAVVSGERRYDRFRDRIMFPIRNTRGQVIAFGGRIL-EKGEPKY 234
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K +ELYGLFEA+ AI ++GYVL+ EGYMDV+ L+Q GF Q+VA LGTACT
Sbjct: 235 LNSPETPLFQKGSELYGLFEARQAIREAGYVLVVEGYMDVVALAQLGFPQSVATLGTACT 294
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
S ++K++ T+ I+FSFDGD AG+ AARRALE L +D K + FLFLP ++DPDSY+
Sbjct: 295 SAQVQKLMRQTDRIVFSFDGDNAGKGAARRALEASLPLVSDTKSVAFLFLPPEHDPDSYV 354
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R++G F K+V AM L +F L+E++ ++ T++ ++++ + + + S+LR
Sbjct: 355 REYGAGAFEKQVEGAMPLSEFMLQELVAGNDMNTLEGRARAQHKAKPWCQAM-APSALRL 413
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQP--ICIEYQIMKLLISYPSLI 358
+I+ L +I + +E+ ++ + + E + +P + +E Q+M+LL+ YP
Sbjct: 414 QIMRKLGQITQTPDDELEAFLEVARPVARSRRREARLPRPPVVGLERQVMRLLLMYPQFA 473
Query: 359 NEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQ 418
++ D+ S + + ++ I ++ ++YL+ + E ++ +
Sbjct: 474 ARLSEADIGAIVDFSPDKGDLLKTVLSAIRELGEQGSYATLVEYLRSGKVDCEQLVHETL 533
Query: 419 DNFEYSIEIAKKTLLDAIYKDRKSVV 444
D EY E+A L+ A+ + R V+
Sbjct: 534 DR-EYEQELALMELVGAVRQIRSRVL 558
>gi|194290319|ref|YP_002006226.1| DNA primase [Cupriavidus taiwanensis LMG 19424]
gi|193224154|emb|CAQ70163.1| DNA PRIMASE [Cupriavidus taiwanensis LMG 19424]
Length = 603
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 162/413 (39%), Positives = 251/413 (60%), Gaps = 15/413 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+DFY+ QL+ + +AI +LK RGL EI +F LGYAP++W L VF Y + N
Sbjct: 120 MTRATDFYRRQLRGAPQAIQYLKGRGLTGEIAGQFGLGYAPDDWQGLETVFGSYRDDNVA 179
Query: 61 AS---SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
A +GL+++ + P +RYDRFR RIMFPI+NT G +IGFGGR++ E
Sbjct: 180 APLVEAGLLIESDKRDADGKP-----RRYDRFRDRIMFPIRNTKGAVIGFGGRVMG-QGE 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA++AI ++GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 234 PKYLNSPETPLFSKGTELYGLFEARHAIRETGYVLVVEGYMDVVALAQLGFANAVATLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT H++K+L T++++FSFDGD AGRRAARRALE CL + D+K I+FLFLP ++DPD
Sbjct: 294 ACTPVHVQKLLRQTDAVVFSFDGDSAGRRAARRALEACLPHVADNKTIRFLFLPAEHDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SY+R+ G + F+ +V AM L +F L+ + +L+ + +++Y + L + +P +
Sbjct: 354 SYVREEGREAFAAQVRNAMPLSRFLLQSVTEELDLRQPEGRARAQYEAKPLLQAMP-AGG 412
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIK-----HKTIEKKNIQPICIEYQIMKLLI 352
LR +I+ L+ + EI + + + + + P +E ++++LL+
Sbjct: 413 LRLQIVRELADATGTTPAEIEAICGLRSDPARVGRFAQPRPRARRQAPTGLEQRVIQLLM 472
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKK 405
YP+L ++ + + ++ L+ + +++ + F ++L +
Sbjct: 473 CYPALSARLDEDARALLLDGEGGDSEVLAHLVSACDGVQGEVNFAAFSEHLAQ 525
>gi|113868684|ref|YP_727173.1| DNA primase [Ralstonia eutropha H16]
gi|113527460|emb|CAJ93805.1| DNA primase [Ralstonia eutropha H16]
Length = 603
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 162/413 (39%), Positives = 253/413 (61%), Gaps = 15/413 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN-- 58
M A+DFY+ QL+++ +AI +LK RGL EI F LGYAP++W L VF Y + N
Sbjct: 120 MTRATDFYRRQLRSAPQAIQYLKGRGLTGEIAANFGLGYAPDDWQGLEAVFGSYRDDNVS 179
Query: 59 -TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L GL+++ + P +RYDRFR RIMFPI+NT G +IGFGGR++ E
Sbjct: 180 APLVECGLLIESDKRDADGKP-----RRYDRFRDRIMFPIRNTKGAVIGFGGRVMG-QGE 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA++AI ++GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 234 PKYLNSPETPLFSKGTELYGLFEARHAIRETGYVLVVEGYMDVVALAQLGFANAVATLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT H++K+L T++++FSFDGD AGRRAARRALE CL + D+K I+FLFLP ++DPD
Sbjct: 294 ACTPVHVQKLLRQTDAVVFSFDGDSAGRRAARRALEACLPHVADNKTIRFLFLPAEHDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SY+R+ G + F+ +V AM L +F L+ + + +L+ + +++Y + L + +P +
Sbjct: 354 SYVREEGTEAFATQVRNAMPLSRFLLQSVTEDLDLRQPEGRARAQYEAKPLLQAMP-AGG 412
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIK-----HKTIEKKNIQPICIEYQIMKLLI 352
LR +I+ L+ + EI + + + + + P +E ++++LL+
Sbjct: 413 LRLQIVRELADATGTTPAEIEAICGLRSDPARVGRFAQPRPRTRRQAPTGLEQRVIQLLM 472
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKK 405
YP+L ++ + + + ++ L++ + +++ + F ++L +
Sbjct: 473 CYPALSARLDEDARALLLGGESSDSEVLAHLVEACDSVQGEVNFAAFSEHLAQ 525
>gi|339326726|ref|YP_004686419.1| DNA primase DnaG [Cupriavidus necator N-1]
gi|338166883|gb|AEI77938.1| DNA primase DnaG [Cupriavidus necator N-1]
Length = 603
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 162/413 (39%), Positives = 250/413 (60%), Gaps = 15/413 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN-- 58
M A+DFY+ QL+ + +AI +LK RGL EI F LGYAP++W L VF Y + N
Sbjct: 120 MTRATDFYRRQLRGAPQAIQYLKGRGLTGEIAANFGLGYAPDDWQGLEAVFGSYRDDNVS 179
Query: 59 -TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L GL+++ + P +RYDRFR RIMFPI+NT G +IGFGGR++ E
Sbjct: 180 APLVECGLLIESEKRDADGKP-----RRYDRFRDRIMFPIRNTKGAVIGFGGRVMG-QGE 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA++AI ++GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 234 PKYLNSPETPLFSKGTELYGLFEARHAIRETGYVLVVEGYMDVVALAQLGFANAVATLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT H++K+L T++++FSFDGD AGRRAARRALE CL + D+K I+FLFLP ++DPD
Sbjct: 294 ACTPVHVQKLLRQTDAVVFSFDGDSAGRRAARRALEACLPHVADNKTIRFLFLPSEHDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SY+R+ G + F+ +V AM L +F L+ + +L+ + +++Y + L + +P +
Sbjct: 354 SYVREEGTEAFANQVRNAMPLSRFLLQSVTEELDLRQPEGRARAQYEAKPLLQAMP-AGG 412
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIK-----HKTIEKKNIQPICIEYQIMKLLI 352
LR +I+ L+ + EI + + + + + P +E ++++LL+
Sbjct: 413 LRLQIVRELADATGTTPAEIEAICGLRSDPARVGRFAQPRPRTRRQAPTGLEQRVIQLLM 472
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKK 405
YP+L ++ + + ++ L++ + +++ + F ++L +
Sbjct: 473 CYPALSARLDEDARALLLGGESGDSEVLAHLVEACDSVQGEVNFAAFSEHLAQ 525
>gi|237748837|ref|ZP_04579317.1| DNA primase [Oxalobacter formigenes OXCC13]
gi|229380199|gb|EEO30290.1| DNA primase [Oxalobacter formigenes OXCC13]
Length = 599
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 174/416 (41%), Positives = 265/416 (63%), Gaps = 9/416 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M AS FY+ QLK + EAI++LKKRG+ EI LRF LGYAP ++L F DY + L
Sbjct: 120 MTQASRFYRQQLKKAPEAIDYLKKRGVTGEIALRFGLGYAPEARDSLKNGFEDYR-ASEL 178
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV++K ++ + KRYDRFR RIMFPI+NT GQ+IGFGGR++ + E KY
Sbjct: 179 EEAGLVIEKQGDEAFHT----SSKRYDRFRDRIMFPIRNTRGQVIGFGGRIL-EKGEPKY 233
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K NELYGLFEA+ AI +SGYVL+ EGYMDV+ L+Q GF Q VA LGTACT
Sbjct: 234 LNSPETPLFQKGNELYGLFEARQAIRESGYVLVVEGYMDVVALAQLGFPQAVATLGTACT 293
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
++K++ T+S+IFSFDGD AGR AARRALE L +D K + FLFLP ++DPDSY+
Sbjct: 294 PVQVQKLMRQTDSVIFSFDGDAAGRGAARRALEASLPLVSDTKGVGFLFLPPEHDPDSYV 353
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + F V +AM L +F LEEI+ + NL T++ ++++ + L + S+LR
Sbjct: 354 REFGPEAFDALVKKAMPLSEFLLEEIVGDNNLNTLEGRARAQHTAKSLCASL-TPSALRL 412
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQP--ICIEYQIMKLLISYPSLI 358
+I+ L++I + E+ + ++ + I+ + +P + +E Q+++LL+ +P
Sbjct: 413 QILRRLAQITQTPDGELETFLGFSKPVVQTRRIQARAPRPPVVGLERQVLRLLMMFPRFG 472
Query: 359 NEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESII 414
E++ +D+ S + ++ +++ + + + +++L+ + E ++
Sbjct: 473 EELSPDDIDTIKGFSPDQGELLMAILNAYGVMGEQANLAALVEHLRLDGVDCEQLV 528
>gi|241663619|ref|YP_002981979.1| DNA primase [Ralstonia pickettii 12D]
gi|240865646|gb|ACS63307.1| DNA primase [Ralstonia pickettii 12D]
Length = 603
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 171/440 (38%), Positives = 263/440 (59%), Gaps = 18/440 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D Y+ QL+++ AI +LK RGL EI F LGYAP++W +L VF Y T
Sbjct: 120 MARACDHYRKQLRSAPNAIQYLKGRGLTGEIAAHFGLGYAPDDWQSLEAVFGPYREDATA 179
Query: 61 AS---SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
A +GLV++ + S ++RYDRFR RIMFPI+NT G +IGFGGR++ E
Sbjct: 180 APLIEAGLVIESEKTGADGS-----HRRYDRFRDRIMFPIRNTKGVVIGFGGRVL-GQGE 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA+NAI + YVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 234 PKYLNSPETPLFSKGTELYGLFEARNAIREFDYVLVVEGYMDVVALAQLGFANAVATLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT H++K+L +++IFSFDGD AGRRAARRALE CL +ATD+K IKFLFLP ++DPD
Sbjct: 294 ACTPVHVQKLLRQVDTVIFSFDGDSAGRRAARRALEACLPHATDNKTIKFLFLPSEHDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
S++R+ G + F+++V AM L +F L+ + + +L+ + +++Y + L +P +
Sbjct: 354 SFVREEGTEAFAREVRNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKPLLSAMP-AGG 412
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ-----PICIEYQIMKLLI 352
LR +I+ L+++ + +I L + + + + +K + P +E ++++LL+
Sbjct: 413 LRLQIVRGLAEMTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTALEQKVLRLLM 472
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKIN--KNF 410
YP+L ++++ + ++ L+ ++ FI+ L + + F
Sbjct: 473 RYPALAARLDTDARAQLTAPQLPQGEVLAGLLAECDAAGPEVHFGAFIERLGQTPYAEAF 532
Query: 411 ESIIVKI-QDNFEYSIEIAK 429
+ + QD+ E I++
Sbjct: 533 AGLRTAVLQDDIELEPAISE 552
>gi|73540590|ref|YP_295110.1| DNA primase [Ralstonia eutropha JMP134]
gi|72118003|gb|AAZ60266.1| DNA primase [Ralstonia eutropha JMP134]
Length = 604
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 164/410 (40%), Positives = 251/410 (61%), Gaps = 8/410 (1%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A++FY+ QL+ + +AI +LK RGL EI +F LGYAP++W L VF Y + +T+
Sbjct: 120 MSRATEFYRRQLRGAPQAIQYLKGRGLTGEIAAQFGLGYAPDDWQGLEAVFGSYRD-DTI 178
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
A+ + +I + K +RYDRFR RIMFPI+NT G +IGFGGR+I E KY
Sbjct: 179 AAPLVEAGLLIESSEKRDADGKPRRYDRFRDRIMFPIRNTKGAVIGFGGRVI-GQGEPKY 237
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K ELYGLFEA++AI ++GYVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 238 LNSPETPLFSKGTELYGLFEARHAIRETGYVLVVEGYMDVVALAQLGFANAVATLGTACT 297
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+S++FSFDGD AGRRAARRALE CL + D+K I+FLFLP ++DPDSY+
Sbjct: 298 PVHVQKLLRQTDSVVFSFDGDAAGRRAARRALEACLPHVADNKAIRFLFLPAEHDPDSYV 357
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+ G + F+ +V +AM L +F L+ + +++ + +++Y + L + +P + LR
Sbjct: 358 REEGTEAFAAQVRDAMPLSRFLLQAVTEEQDMRQPEGRARAQYEAKPLLQAMP-ACGLRL 416
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIK-----HKTIEKKNIQPICIEYQIMKLLISYP 355
+II L+ + EI + + + + K P +E ++++LL+ YP
Sbjct: 417 QIIRELADATGTTPAEIEAICGLRSDPARAGRFAQPRPRAKRQAPTGLEQRVLQLLMCYP 476
Query: 356 SLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKK 405
SL ++ + + ++ L+ + ++ + F ++L +
Sbjct: 477 SLAARLDEDSRALLLDPEGADAEVLAHLVAACDEVEGQVNFAAFSEHLAQ 526
>gi|393778031|ref|ZP_10366314.1| DNA primase [Ralstonia sp. PBA]
gi|392714917|gb|EIZ02508.1| DNA primase [Ralstonia sp. PBA]
Length = 622
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 162/413 (39%), Positives = 253/413 (61%), Gaps = 15/413 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M AS+FYK L+ ++ AI +LK+RGL E+ RF LGYAP++W +L VF Y +
Sbjct: 139 MTRASEFYKRALRGAQPAIQYLKRRGLTGEVAARFALGYAPDDWQSLESVFGSYRDDAVA 198
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L GLV++ + +++RYDRFR RIMFPI+NT GQ+IGFGGR++ D E
Sbjct: 199 GPLIEGGLVIESEKTDTDG-----RHRRYDRFRDRIMFPIRNTKGQVIGFGGRVL-DGGE 252
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K NELYGLFEA++AI ++GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 253 PKYLNSPETPLFSKGNELYGLFEARHAIRETGYVLVVEGYMDVVALAQLGFANAVATLGT 312
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT H++K+L +++IFSFDGD AGRRAARRALE L + D+K I+FLFLP ++DPD
Sbjct: 313 ACTPMHVQKLLRQADTVIFSFDGDSAGRRAARRALEAALPHVADNKSIQFLFLPSEHDPD 372
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
S++R+ G + F+ ++ AM L +F L+ + +L+ + +++Y + L + +P +S
Sbjct: 373 SFVREQGQEAFASEIRNAMPLSRFLLQAVSDGQDLRQPEGRARTQYEAKPLLQAMP-ASG 431
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ-----PICIEYQIMKLLI 352
LR +I+ L+++ + +I L + + + + + + P +E ++++LL+
Sbjct: 432 LRLQIVRGLAELTDTTPADIEALCGLKSDPAQAGRMTRPRPRTSRQAPTALEQRVLQLLM 491
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKK 405
YP + ++ Q ++ L+ +++ + F + L +
Sbjct: 492 RYPHFVQHVDEATRNGLCDDGQPQSEVLAHLLGECAAIGENVNFAGFSEALAQ 544
>gi|420256204|ref|ZP_14759060.1| DNA primase, catalytic core [Burkholderia sp. BT03]
gi|398043663|gb|EJL36549.1| DNA primase, catalytic core [Burkholderia sp. BT03]
Length = 628
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 162/368 (44%), Positives = 248/368 (67%), Gaps = 11/368 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M ASDFYK QL+ + AI +LKKRGL EI RF LGYAP+ W L F +Y + + L
Sbjct: 132 MTTASDFYKTQLRGAPNAIQYLKKRGLTGEIAKRFGLGYAPDGWQNLETAFPNYRD-DAL 190
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV I+++ +S + +RYDRFR R+MFPI+N GQ+IGFGGR++ D E KY
Sbjct: 191 VEAGLV---IVSE--KSDAQGQNRRYDRFRERVMFPIRNVKGQVIGFGGRVL-DGGEPKY 244
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 245 LNSPETPLFNKGSELYGLFEARLAIREQRYVLVVEGYMDVVALAQLGFENAVATLGTACT 304
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K++ T++++FSFDGD AGRRAARRAL+ CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 305 PIHVQKLMRQTDTVVFSFDGDSAGRRAARRALDACLPHAADNRTIRFLFLPAEHDPDSYV 364
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + F+++V AM L QF L E++ L + ++ ++ + L +++P +++LR
Sbjct: 365 REFGTEAFAEQVRRAMPLSQFLLNEVLAGKELDQPEGRARALFDAKPLLQMLP-ANALRA 423
Query: 301 KIISSLSKIIKVSFNEINNLFKINT--SSIKHKTIEKKNIQPIC-IEYQIMKLLISYPSL 357
+I+ + + V F E+ L +++ +++ +K+ + + IE + ++ L+ +P +
Sbjct: 424 QIMHMFADRLDVPFEEVAALCEVDARIAAVARSAPARKDRRSVTGIEQRALRNLVMHPRI 483
Query: 358 INEINSED 365
+ + E+
Sbjct: 484 VAVLGEEE 491
>gi|187929500|ref|YP_001899987.1| DNA primase [Ralstonia pickettii 12J]
gi|309781723|ref|ZP_07676456.1| DNA primase [Ralstonia sp. 5_7_47FAA]
gi|404396615|ref|ZP_10988409.1| DNA primase [Ralstonia sp. 5_2_56FAA]
gi|187726390|gb|ACD27555.1| DNA primase [Ralstonia pickettii 12J]
gi|308919364|gb|EFP65028.1| DNA primase [Ralstonia sp. 5_7_47FAA]
gi|348613705|gb|EGY63284.1| DNA primase [Ralstonia sp. 5_2_56FAA]
Length = 603
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 162/363 (44%), Positives = 234/363 (64%), Gaps = 15/363 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D Y+ QL+++ AI +LK RGL EI F LGYAP++W +L VF Y T
Sbjct: 120 MARACDHYRKQLRSAPNAIQYLKGRGLTGEIAAHFGLGYAPDDWQSLEAVFGPYREDATA 179
Query: 61 AS---SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
A +GLV++ + S ++RYDRFR RIMFPI+NT G +IGFGGR++ E
Sbjct: 180 APLIEAGLVIESEKTGADGS-----HRRYDRFRDRIMFPIRNTKGVVIGFGGRVLG-QGE 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA+NAI + YVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 234 PKYLNSPETPLFSKGTELYGLFEARNAIREFDYVLVVEGYMDVVALAQLGFANAVATLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT TH++K+L +++IFSFDGD AGRRAARRALE CL +ATD+K IKFLFLP ++DPD
Sbjct: 294 ACTPTHVQKLLRQVDTVIFSFDGDSAGRRAARRALEACLPHATDNKTIKFLFLPAEHDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
S++R+ G + F+++V AM L +F L+ + + +L+ + +++Y + L +P +
Sbjct: 354 SFVREEGTEAFAREVHNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKPLLSAMP-AGG 412
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ-----PICIEYQIMKLLI 352
LR +I+ L+ + + +I L + + + + +K + P +E ++++LL+
Sbjct: 413 LRLQIVRGLADMTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTALEQKVLRLLM 472
Query: 353 SYP 355
YP
Sbjct: 473 RYP 475
>gi|374367601|ref|ZP_09625662.1| DNA primase [Cupriavidus basilensis OR16]
gi|373100904|gb|EHP41964.1| DNA primase [Cupriavidus basilensis OR16]
Length = 604
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 163/413 (39%), Positives = 255/413 (61%), Gaps = 14/413 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M A++FY+ QL+++ +AI +LK RGL EI +F LGYAP++W L VF +Y +
Sbjct: 120 MTRATEFYRKQLRSAPQAIQYLKGRGLTGEIAAQFGLGYAPDDWQGLESVFGNYRDDAIA 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +GL+++ + K +RYDRFR RIMFPI++T GQ+IGFGGR++ E
Sbjct: 180 GPLVEAGLMIESAEKRDADG----KPRRYDRFRDRIMFPIRSTKGQVIGFGGRVM-GQGE 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA++AI ++GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 235 PKYLNSPETPLFSKGTELYGLFEARHAIRETGYVLVVEGYMDVVALAQLGFANAVATLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT+ H++K+L T++++FSFDGD AGRRAARRALE CL Y D+K I+FLFLP ++DPD
Sbjct: 295 ACTAVHVQKLLRQTDAVVFSFDGDAAGRRAARRALEACLPYVADNKTIRFLFLPAEHDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SY+R+ G F+ +V +AM L +F L+ + L+ + +++Y + L + +P +
Sbjct: 355 SYVREQGTDAFAAQVRDAMPLSRFLLQVVSEGQELRQAEGRARAQYEAKPLLQSMP-AGG 413
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIK-----HKTIEKKNIQPICIEYQIMKLLI 352
LR +I+ L+ + EI + + + + K P +E ++++LL+
Sbjct: 414 LRLQIVRELADATGTTPAEIEAVCGLASDPARVGRFAQPRPRTKRQAPAGLEQRVLQLLM 473
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKK 405
YP L + ++ + + + Q ++ L+ + +++ + F ++L +
Sbjct: 474 RYPQLSSRLDVDSRALLLEDEQADAEVLAHLVSACDELQGEVNFAAFSEHLAQ 526
>gi|390577039|ref|ZP_10257079.1| DNA primase [Burkholderia terrae BS001]
gi|389931017|gb|EIM93105.1| DNA primase [Burkholderia terrae BS001]
Length = 628
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 162/368 (44%), Positives = 247/368 (67%), Gaps = 11/368 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M ASDFYK QL+ + AI +LKKRGL EI RF LGYAP+ W L F +Y + + L
Sbjct: 132 MTTASDFYKTQLRGAPNAIQYLKKRGLTGEIAKRFGLGYAPDGWQNLETAFPNYRD-DAL 190
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV I+++ +S + +RYDRFR R+MFPI+N GQ+IGFGGR++ D E KY
Sbjct: 191 VEAGLV---IVSE--KSDAQGQNRRYDRFRERVMFPIRNVKGQVIGFGGRVL-DGGEPKY 244
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 245 LNSPETPLFNKGSELYGLFEARLAIREQRYVLVVEGYMDVVALAQLGFENAVATLGTACT 304
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K++ T++++FSFDGD AGRRAARRAL+ CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 305 PIHVQKLMRQTDTVVFSFDGDSAGRRAARRALDACLPHAADNRTIRFLFLPAEHDPDSYV 364
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG F+++V AM L QF L E++ L + ++ ++ + L +++P +++LR
Sbjct: 365 REFGTDAFAEQVRRAMPLSQFLLNEVLAGKELDQPEGRARALFDAKPLLQMLP-ANALRA 423
Query: 301 KIISSLSKIIKVSFNEINNLFKINT--SSIKHKTIEKKNIQPIC-IEYQIMKLLISYPSL 357
+I+ + + V F E+ L +++ +++ +K+ + + IE + ++ L+ +P +
Sbjct: 424 QIMHMFADRLDVPFEEVAALCEVDARIAAVARSAPARKDRRSVTGIEQRALRNLVMHPRI 483
Query: 358 INEINSED 365
+ + E+
Sbjct: 484 VAVLGEEE 491
>gi|107026825|ref|YP_624336.1| DNA primase [Burkholderia cenocepacia AU 1054]
gi|105896199|gb|ABF79363.1| DNA primase [Burkholderia cenocepacia AU 1054]
Length = 800
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 166/388 (42%), Positives = 247/388 (63%), Gaps = 12/388 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + +L
Sbjct: 304 MTAACDYYRKQLRGATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAAFPDYRD-ESL 362
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + V +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 363 VEAGLVI--VSEKTDAQGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 416
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 417 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 476
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 477 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDNRTIRFLFLPTEHDPDSYV 536
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 537 REFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 595
Query: 301 KIISSLSKIIKVSFNEINNLFKINT---SSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + + F E+ L ++T + + + + E + ++ L+ +P +
Sbjct: 596 QIMHMFADRLDIPFEEVAALSDVDTRIATPPRQAPARSERRRVTDSEKRALRTLVMHPRI 655
Query: 358 INEINSEDMIIFSKCSQNYVKMFFQLID 385
++++ E + + ++F +++D
Sbjct: 656 ASQLDDEQIATL-RALPRIGELFAEVVD 682
>gi|186472769|ref|YP_001860111.1| DNA primase [Burkholderia phymatum STM815]
gi|184195101|gb|ACC73065.1| DNA primase [Burkholderia phymatum STM815]
Length = 630
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/368 (43%), Positives = 249/368 (67%), Gaps = 11/368 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M AS+FYK QL+ + AI +LKKRGL EI RF LGYAP+ W L F +Y + + L
Sbjct: 134 MQTASEFYKAQLRGAPNAIQYLKKRGLTGEIAKRFGLGYAPDGWQNLEAAFPNYRD-DAL 192
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV I+++ +S + +RYDRFR R+MFPI+N GQ+IGFGGR++ D E KY
Sbjct: 193 VESGLV---IVSE--KSDAQGQNRRYDRFRERVMFPIRNVKGQVIGFGGRVL-DGGEPKY 246
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 247 LNSPETPLFNKGSELYGLFEARLAIREQKYVLVVEGYMDVVALAQLGFENAVATLGTACT 306
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K++ T++++FSFDGD AGRRAARRAL+ CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 307 PIHVQKLMRQTDTVVFSFDGDSAGRRAARRALDACLPHAADNRTIRFLFLPAEHDPDSYV 366
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + F+++V AM L QF L E++ L + ++ ++ + L +++P +++LR
Sbjct: 367 REFGTQAFAEQVRRAMPLSQFLLNEVLAGKELDQPEGRARALFDAKPLLQMLP-ANALRA 425
Query: 301 KIISSLSKIIKVSFNEINNLFKINT--SSIKHKTIEKKNIQPIC-IEYQIMKLLISYPSL 357
+I+ + + V F E+ L +++ +++ +K+ + + +E + ++ L+ +P +
Sbjct: 426 QIMHMFADRLDVPFEEVAALCEVDARIAAVARSAPARKDRRSVTGLEQRALRNLVMHPRI 485
Query: 358 INEINSED 365
+ ++ E+
Sbjct: 486 VAVLDEEE 493
>gi|312795732|ref|YP_004028654.1| DNA primase [Burkholderia rhizoxinica HKI 454]
gi|312167507|emb|CBW74510.1| DNA primase (EC 2.7.7.-) [Burkholderia rhizoxinica HKI 454]
Length = 635
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 158/368 (42%), Positives = 241/368 (65%), Gaps = 10/368 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+D+Y+ QL+ + +AI +LK+RGL EI LRF LGYAP+ W L F DY + + L
Sbjct: 132 MQVAADYYRKQLRGAPDAIQYLKRRGLTGEIALRFGLGYAPDGWQNLESAFADYRD-DAL 190
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + +K + + + +RYDRFR RIMFPI+N GQ+IGFG R++ D E KY
Sbjct: 191 LEAGLVI--VSDKASSN---GEARRYDRFRQRIMFPIRNVRGQVIGFGARVLDDGGEPKY 245
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K ELYGLFEA+ AI + G+VL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 246 LNSPETPLFNKGTELYGLFEARLAIREKGFVLVVEGYMDVVALAQLGFPNAVATLGTACT 305
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K++ T+++IFSFDGD AGRRAARRAL+ CL +A D++ I+FLFLP ++DPDSYI
Sbjct: 306 PVHVQKLMRQTDTVIFSFDGDVAGRRAARRALDACLPHAADNRTIRFLFLPAEHDPDSYI 365
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+ G + F+ ++ AM L QF L E++ + + + K+ Y+ + L + +P ++LR
Sbjct: 366 REHGMQAFADQIGRAMPLSQFLLNEVLADKEIDQPEGRAKALYDAKPLLQALP-PNALRA 424
Query: 301 KIISSLSKIIKVSFNEINNLFKINT---SSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ L+ + E+ +I + +++ + E++ ++ +I YP +
Sbjct: 425 QILHMLADRLATPVEEVAQFCEIGSRTAPAVRGAPARADRRRVTGHEHRALRNVIMYPRI 484
Query: 358 INEINSED 365
+ ++ +D
Sbjct: 485 VAMLDVQD 492
>gi|172062814|ref|YP_001810465.1| DNA primase [Burkholderia ambifaria MC40-6]
gi|171995331|gb|ACB66249.1| DNA primase [Burkholderia ambifaria MC40-6]
Length = 622
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 165/369 (44%), Positives = 239/369 (64%), Gaps = 11/369 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + +L
Sbjct: 126 MSVACDYYRKQLRGATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLETAFPDYRD-ESL 184
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+ + K + V +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 185 VESGLVI--VSEKTDAQGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 238
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 239 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 298
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 299 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIRFLFLPSEHDPDSYV 358
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 359 REFGAQAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 417
Query: 301 KIISSLSKIIKVSFNEINNLFKIN---TSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + + F E+ L ++ + +H + + E + ++ L+ +P +
Sbjct: 418 QIMHMFADRLDIPFEEVAALSDVDARIAAPARHAPPRSERRRVTDSEKRALRTLVMHPRI 477
Query: 358 INEINSEDM 366
++++ E +
Sbjct: 478 ASQLDDEQL 486
>gi|115358007|ref|YP_775145.1| DNA primase [Burkholderia ambifaria AMMD]
gi|115283295|gb|ABI88811.1| DNA primase [Burkholderia ambifaria AMMD]
Length = 622
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 165/369 (44%), Positives = 239/369 (64%), Gaps = 11/369 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + +L
Sbjct: 126 MSVACDYYRKQLRGATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLETAFPDYRD-ESL 184
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+ + K + V +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 185 VESGLVI--VSEKTDAQGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 238
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 239 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 298
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 299 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIRFLFLPSEHDPDSYV 358
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 359 REFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 417
Query: 301 KIISSLSKIIKVSFNEINNLFKIN---TSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + + F E+ L ++ + +H + + E + ++ L+ +P +
Sbjct: 418 QIMHMFADRLDIPFEEVAALSDVDARIAAPARHAPPRSERRRVTDSEKRALRTLVMHPRI 477
Query: 358 INEINSEDM 366
++++ E +
Sbjct: 478 ASQLDDEQL 486
>gi|206562772|ref|YP_002233535.1| DNA primase [Burkholderia cenocepacia J2315]
gi|198038812|emb|CAR54774.1| putative DNA primase [Burkholderia cenocepacia J2315]
Length = 625
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 166/388 (42%), Positives = 247/388 (63%), Gaps = 12/388 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + +L
Sbjct: 129 MTAACDYYRKQLRGATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAAFPDYRD-ESL 187
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + V +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 188 VEAGLVI--VSEKTDAQGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 241
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 242 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 301
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 302 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDNRTIRFLFLPTEHDPDSYV 361
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 362 REFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 420
Query: 301 KIISSLSKIIKVSFNEINNLFKINT---SSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + + F E+ L ++T + + + + E + ++ L+ +P +
Sbjct: 421 QIMHMFADRLDIPFEEVAGLSDVDTRIATPPRQAPARSERRRVTDSEKRALRTLVMHPRV 480
Query: 358 INEINSEDMIIFSKCSQNYVKMFFQLID 385
++++ E + + ++F +++D
Sbjct: 481 ASQLDDEQIATL-RALPRIGELFAEVVD 507
>gi|254253608|ref|ZP_04946925.1| DNA primase [Burkholderia dolosa AUO158]
gi|124898253|gb|EAY70096.1| DNA primase [Burkholderia dolosa AUO158]
Length = 624
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 167/388 (43%), Positives = 247/388 (63%), Gaps = 12/388 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + +L
Sbjct: 128 MSVACDYYRKQLRGATVAIQYLKSRGLTGEIAARFGLGYAPDGWQNLEAAFPDYRD-ESL 186
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+ + K + V +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 187 VESGLVI--VSEKTDAQGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 240
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 241 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 300
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRAL+ CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 301 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTIRFLFLPPEHDPDSYV 360
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 361 REFGADAFSEQVERAMPLSQFLLNEAISGKALDQPEGRAKALFDAKPLLQALP-ANALRA 419
Query: 301 KIISSLSKIIKVSFNEINNLFKINT---SSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + + F E+ L +++ + ++H + + E + ++ L+ YP +
Sbjct: 420 QIMHMFADRLDIPFEEVAALCDVDSRIAAPLRHAPARSERRRVTDSEKRALRTLVMYPRI 479
Query: 358 INEINSEDMIIFSKCSQNYVKMFFQLID 385
+++ E + + ++F +++D
Sbjct: 480 ALQLDDEQIATL-RVLPRIGELFAEVVD 506
>gi|421866279|ref|ZP_16297951.1| DNA primase [Burkholderia cenocepacia H111]
gi|358073862|emb|CCE48829.1| DNA primase [Burkholderia cenocepacia H111]
Length = 639
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 166/388 (42%), Positives = 247/388 (63%), Gaps = 12/388 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + +L
Sbjct: 143 MTAACDYYRKQLRGATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAAFPDYRD-ESL 201
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + V +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 202 VEAGLVI--VSEKTDAQGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 255
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 256 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 315
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 316 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDNRTIRFLFLPAEHDPDSYV 375
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 376 REFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 434
Query: 301 KIISSLSKIIKVSFNEINNLFKINT---SSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + + F E+ L ++T + + + + E + ++ L+ +P +
Sbjct: 435 QIMHMFADRLDIPFEEVAGLSDVDTRIATPPRQAPARSERRRVTDSEKRALRTLVMHPRV 494
Query: 358 INEINSEDMIIFSKCSQNYVKMFFQLID 385
++++ E + + ++F +++D
Sbjct: 495 ASQLDDEQIATL-RALPRIGELFAEVVD 521
>gi|444363473|ref|ZP_21163899.1| DNA primase [Burkholderia cenocepacia BC7]
gi|444369201|ref|ZP_21168970.1| DNA primase [Burkholderia cenocepacia K56-2Valvano]
gi|443594947|gb|ELT63561.1| DNA primase [Burkholderia cenocepacia BC7]
gi|443599497|gb|ELT67770.1| DNA primase [Burkholderia cenocepacia K56-2Valvano]
Length = 639
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 166/388 (42%), Positives = 247/388 (63%), Gaps = 12/388 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + +L
Sbjct: 143 MTAACDYYRKQLRGATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAAFPDYRD-ESL 201
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + V +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 202 VEAGLVI--VSEKTDAQGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 255
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 256 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 315
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 316 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDNRTIRFLFLPTEHDPDSYV 375
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 376 REFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 434
Query: 301 KIISSLSKIIKVSFNEINNLFKINT---SSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + + F E+ L ++T + + + + E + ++ L+ +P +
Sbjct: 435 QIMHMFADRLDIPFEEVAGLSDVDTRIATPPRQAPARSERRRVTDSEKRALRTLVMHPRV 494
Query: 358 INEINSEDMIIFSKCSQNYVKMFFQLID 385
++++ E + + ++F +++D
Sbjct: 495 ASQLDDEQIATL-RALPRIGELFAEVVD 521
>gi|116691982|ref|YP_837515.1| DNA primase [Burkholderia cenocepacia HI2424]
gi|170736024|ref|YP_001777284.1| DNA primase [Burkholderia cenocepacia MC0-3]
gi|116649982|gb|ABK10622.1| DNA primase [Burkholderia cenocepacia HI2424]
gi|169818212|gb|ACA92794.1| DNA primase [Burkholderia cenocepacia MC0-3]
Length = 625
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 166/388 (42%), Positives = 247/388 (63%), Gaps = 12/388 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + +L
Sbjct: 129 MTAACDYYRKQLRGATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAAFPDYRD-ESL 187
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + V +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 188 VEAGLVI--VSEKTDAQGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 241
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 242 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 301
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 302 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDNRTIRFLFLPTEHDPDSYV 361
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 362 REFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 420
Query: 301 KIISSLSKIIKVSFNEINNLFKINT---SSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + + F E+ L ++T + + + + E + ++ L+ +P +
Sbjct: 421 QIMHMFADRLDIPFEEVAALSDVDTRIATPPRQAPARSERRRVTDSEKRALRTLVMHPRI 480
Query: 358 INEINSEDMIIFSKCSQNYVKMFFQLID 385
++++ E + + ++F +++D
Sbjct: 481 ASQLDDEQIATL-RALPRIGELFAEVVD 507
>gi|402569602|ref|YP_006618946.1| DNA primase [Burkholderia cepacia GG4]
gi|402250799|gb|AFQ51252.1| DNA primase [Burkholderia cepacia GG4]
Length = 624
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 166/388 (42%), Positives = 246/388 (63%), Gaps = 12/388 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + +L
Sbjct: 128 MSAACDYYRKQLRGATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLETAFPDYRD-ESL 186
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+ + K + V +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 187 VESGLVI--VSEKTDAQGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 240
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 241 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 300
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDS++
Sbjct: 301 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIRFLFLPSEHDPDSFV 360
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 361 REFGADAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 419
Query: 301 KIISSLSKIIKVSFNEINNLFKINT---SSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + + F E+ L ++T + + + + E + ++ L+ +P +
Sbjct: 420 QIMHMFADRLDIPFEEVAGLSDVDTRIAAPPRQAPARSERRRVTDSEKRALRTLVMHPRI 479
Query: 358 INEINSEDMIIFSKCSQNYVKMFFQLID 385
++++ E + + ++F +++D
Sbjct: 480 ASQLDDEQLATL-RALPRIGELFAEVVD 506
>gi|78063052|ref|YP_372960.1| DNA primase [Burkholderia sp. 383]
gi|77970937|gb|ABB12316.1| DNA primase [Burkholderia sp. 383]
Length = 638
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 166/388 (42%), Positives = 246/388 (63%), Gaps = 12/388 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + +L
Sbjct: 142 MTAACDYYRKQLRGATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAAFPDYRD-ESL 200
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+ + K + +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 201 VESGLVI--VSEKTDAQGAA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 254
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 255 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 314
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 315 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDNRTIRFLFLPAEHDPDSYV 374
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 375 REFGEEAFSQQVERAMPLSQFLLNEAISGKALDQPEGRAKALFDAKPLLQALP-ANALRA 433
Query: 301 KIISSLSKIIKVSFNEINNLFKINT---SSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + + F E+ L ++T + + + + E + ++ L+ +P +
Sbjct: 434 QIMHMFADRLDIPFEEVAGLSDVDTRIAAPPRQAPPRSERRRVTDSEKRALRTLVMHPRI 493
Query: 358 INEINSEDMIIFSKCSQNYVKMFFQLID 385
++++ E + + ++F +++D
Sbjct: 494 ASQLDDEQLATL-RALPRIGELFAEVVD 520
>gi|94311543|ref|YP_584753.1| DNA primase [Cupriavidus metallidurans CH34]
gi|93355395|gb|ABF09484.1| DNA primase [Cupriavidus metallidurans CH34]
Length = 613
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/413 (39%), Positives = 250/413 (60%), Gaps = 14/413 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M A+DFYK QL+ + +AI +LK RGL EI F LGYAP++W L VF Y +
Sbjct: 120 MTRATDFYKKQLRGAPQAIQYLKGRGLTGEIAAHFGLGYAPDDWQGLETVFGSYRDDAIA 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +GL+++ + K +RYDRFR RIMFPI+NT G +IGFGGR++ E
Sbjct: 180 GPLVEAGLLIESQEKRDADG----KPRRYDRFRDRIMFPIRNTKGNVIGFGGRVM-GQGE 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA++AI ++GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 235 PKYLNSPETPLFSKGTELYGLFEARHAIRENGYVLVVEGYMDVVALAQLGFANAVATLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT H++K++ T++++FSFDGD AGRRAARRALE CL + D+K I+FLFLP ++DPD
Sbjct: 295 ACTPVHVQKLMRQTDAVVFSFDGDAAGRRAARRALEACLPHVADNKTIRFLFLPAEHDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SY+R+ G F+++V AM L +F L+ + + +L+ + +++Y + L + +P +
Sbjct: 355 SYVREEGTDAFARQVQNAMPLSRFLLQIVTEDQDLRQPEGRARAQYEAKPLLQAMP-AGG 413
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIK-----HKTIEKKNIQPICIEYQIMKLLI 352
LR +I+ L+ + EI + + + S + + P +E ++++LL+
Sbjct: 414 LRLQIVRELADTTSTTPAEIEAICGLGSDSSRVGRFAQPRPRARRQAPTGLEQRVIQLLM 473
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKK 405
YPSL ++ + + + + L+ + +++ + F + L +
Sbjct: 474 CYPSLAARLDGDARALLLDPQHSGSEALGYLVSACDGIQGEVNFAAFSEQLAQ 526
>gi|430809194|ref|ZP_19436309.1| DNA primase [Cupriavidus sp. HMR-1]
gi|429498338|gb|EKZ96848.1| DNA primase [Cupriavidus sp. HMR-1]
Length = 613
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 250/413 (60%), Gaps = 14/413 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M A+DFYK QL+ + +AI +LK RGL EI F LGYAP++W L VF Y +
Sbjct: 120 MTRATDFYKKQLRGAPQAIQYLKGRGLTGEIAAHFGLGYAPDDWQGLETVFGSYRDDAIA 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +GL +I ++ K +RYDRFR RIMFPI+NT G +IGFGGR++ E
Sbjct: 180 GPLVEAGL----LIESQDKRDADGKPRRYDRFRDRIMFPIRNTKGNVIGFGGRVM-GRGE 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA++AI ++GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 235 PKYLNSPETPLFSKGTELYGLFEARHAIRENGYVLVVEGYMDVVALAQLGFANAVATLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT H++K++ T++++FSFDGD AGRRAARRALE CL + D+K I+FLFLP ++DPD
Sbjct: 295 ACTPVHVQKLMRQTDAVVFSFDGDAAGRRAARRALEACLPHVADNKTIRFLFLPAEHDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SY+R+ G F+++V AM L +F L+ + + +L+ + +++Y + L + +P +
Sbjct: 355 SYVREEGTDAFARQVQNAMPLSRFLLQIVTEDQDLRQPEGRARAQYEAKPLLQAMP-AGG 413
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIK-----HKTIEKKNIQPICIEYQIMKLLI 352
LR +I+ L+ + EI + + + S + + P +E ++++LL+
Sbjct: 414 LRLQIVRELADTTSTTPAEIEAICGLGSDSSRVGRFAQPRPRARRQAPTGLEQRVIQLLM 473
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKK 405
YPSL ++ + + + + L+ + +++ + F + L +
Sbjct: 474 CYPSLAARLDGDARALLLDPQHSGSEALGYLVSACDGIQGEVNFAAFSEQLAQ 526
>gi|254248773|ref|ZP_04942093.1| DNA primase [Burkholderia cenocepacia PC184]
gi|124875274|gb|EAY65264.1| DNA primase [Burkholderia cenocepacia PC184]
Length = 637
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 166/388 (42%), Positives = 245/388 (63%), Gaps = 12/388 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + +L
Sbjct: 141 MTAACDYYRKQLRGATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAAFPDYRD-ESL 199
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + V +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 200 VEAGLVI--VSEKTDAQGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 253
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 254 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 313
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 314 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDNRTIRFLFLPTEHDPDSYV 373
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 374 REFGADAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 432
Query: 301 KIISSLSKIIKVSFNEINNLFKINTS---SIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + + F E+ L ++T + + + E + ++ L+ +P +
Sbjct: 433 QIMHMFADRLDIPFEEVATLSDVDTRIAMPPRQAPARSERRRVTDSEKRALRTLVMHPRI 492
Query: 358 INEINSEDMIIFSKCSQNYVKMFFQLID 385
++++ E + + ++F +++D
Sbjct: 493 ASQLDDEQIATL-RALPRIGELFAEVVD 519
>gi|323529250|ref|YP_004231402.1| DNA primase [Burkholderia sp. CCGE1001]
gi|323386252|gb|ADX58342.1| DNA primase [Burkholderia sp. CCGE1001]
Length = 622
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 163/367 (44%), Positives = 242/367 (65%), Gaps = 11/367 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LKKRGL EI RF LGYAP+ W L F +Y + ++L
Sbjct: 126 MQTACDYYRKQLRGAPGAIQYLKKRGLTGEIAARFGLGYAPDGWQNLEAAFPNYRD-DSL 184
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+ + K + + +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 185 VESGLVI--VSEKADGQ---GQNRRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 238
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + GYVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 239 LNSPETPLFNKGSELYGLFEARLAIREQGYVLVVEGYMDVVALAQLGFQNAVATLGTACT 298
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K++ T+++IFSFDGD AGRRAARRAL+ CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 299 PVHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTIRFLFLPAEHDPDSYV 358
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + F+++V AM L QF L E++ L + ++ ++ + L + +P +++LR
Sbjct: 359 REFGTEAFAEQVERAMPLSQFMLNEVLAGKELDQPEGKARALFDAKPLLQALP-ANALRA 417
Query: 301 KIISSLSKIIKVSFNEINNLFKIN---TSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + V F+E+ L +++ ++ + K IE + ++ L+ YP
Sbjct: 418 QIMHMFADRLDVPFDEVAALCEVDARIAAAARSAPARKDRRSVTGIEEKTLRNLVMYPRT 477
Query: 358 INEINSE 364
+ ++ E
Sbjct: 478 VAVLDEE 484
>gi|170691125|ref|ZP_02882291.1| DNA primase [Burkholderia graminis C4D1M]
gi|170144374|gb|EDT12536.1| DNA primase [Burkholderia graminis C4D1M]
Length = 636
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 164/367 (44%), Positives = 244/367 (66%), Gaps = 11/367 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LKKRGL EI RF LGYAP+ W L F +Y + ++L
Sbjct: 140 MQTACDYYRKQLRGAPVAIQYLKKRGLTGEIAARFGLGYAPDGWQNLEAAFPNYRD-DSL 198
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV I+++ +S + +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 199 VESGLV---IVSE--KSDAQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 252
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + GYVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 253 LNSPETPLFNKGSELYGLFEARLAIREQGYVLVVEGYMDVVALAQLGFQNAVATLGTACT 312
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K++ T+++IFSFDGD AGRRAARRAL+ CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 313 PVHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTIRFLFLPTEHDPDSYV 372
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + F ++V AM L QF L E++ L + ++ ++ + L + +P +++LR
Sbjct: 373 REFGTEGFGEQVERAMPLSQFMLNEVLAGKELDQPEGRARALFDAKPLLQALP-ANALRA 431
Query: 301 KIISSLSKIIKVSFNEINNLFKINT---SSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + V F+E+ L ++++ ++ + K IE + ++ L+ YP
Sbjct: 432 QIMHMFADRLDVPFDEVAALCEVDSRIAAAARLAPARKDRRSVTGIEEKTLRNLVMYPRT 491
Query: 358 INEINSE 364
+ ++ E
Sbjct: 492 VAVLDEE 498
>gi|299066182|emb|CBJ37366.1| DNA primase [Ralstonia solanacearum CMR15]
Length = 603
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 251/413 (60%), Gaps = 15/413 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M ASD Y+ QL+ + A+ +LK RGL EI F LGYAP++W +L VF Y +
Sbjct: 120 MARASDHYRKQLRGAPGAVQYLKGRGLTGEIAGHFGLGYAPDDWQSLESVFGAYRDDAIA 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +GLV++ + +++RYDRFR RIMFPI+NT G +IGFGGR++ E
Sbjct: 180 TPLIEAGLVIESEKTDADG-----RHRRYDRFRDRIMFPIRNTKGVVIGFGGRVL-GQGE 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA+NAI + GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 234 PKYLNSPETPLFSKGTELYGLFEARNAIREFGYVLVVEGYMDVVALAQLGFANAVATLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT H++K+L +++IFSFDGD AGRRAARRALE CL + TD+KI+KFLFLP ++DPD
Sbjct: 294 ACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKIVKFLFLPHEHDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
++IR+ G + F+ +V AM L +F L+ + + +L+ + +++Y + L +P
Sbjct: 354 TFIREEGTEAFAAEVRNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKPLLSAMP-PGG 412
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ-----PICIEYQIMKLLI 352
LR +I+ L+++ + +I L + + + + +K + P +E ++++LL+
Sbjct: 413 LRLQIVRGLAEVTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTALEQKVLRLLM 472
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKK 405
YP+L ++++ + +M L+ ++ F++ L +
Sbjct: 473 RYPALAARLDADTRTQLTAPELPQGEMLSGLLAECDTAGPEMHFGAFVERLGQ 525
>gi|170699446|ref|ZP_02890490.1| DNA primase [Burkholderia ambifaria IOP40-10]
gi|170135646|gb|EDT03930.1| DNA primase [Burkholderia ambifaria IOP40-10]
Length = 622
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 164/369 (44%), Positives = 237/369 (64%), Gaps = 11/369 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + +L
Sbjct: 126 MSVACDYYRKQLRGATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLETAFPDYRD-ESL 184
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+ + K + V +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 185 VESGLVI--VSEKTDAQGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 238
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 239 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 298
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 299 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIRFLFLPSEHDPDSYV 358
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 359 REFGADAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 417
Query: 301 KIISSLSKIIKVSFNEINNLFKIN---TSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + + F E+ L ++ + + + + E + ++ L+ +P +
Sbjct: 418 QIMHMFADRLDIPFEEVAALSDVDARIAAPARQAPPRSERRRVTDSEKRALRTLVMHPRI 477
Query: 358 INEINSEDM 366
++++ E +
Sbjct: 478 ASQLDDEQL 486
>gi|171320195|ref|ZP_02909255.1| DNA primase [Burkholderia ambifaria MEX-5]
gi|171094547|gb|EDT39601.1| DNA primase [Burkholderia ambifaria MEX-5]
Length = 623
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/369 (44%), Positives = 236/369 (63%), Gaps = 11/369 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + +L
Sbjct: 127 MSVACDYYRKQLRGATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLETAFPDYRD-ESL 185
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + V +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 186 VEAGLVI--VSEKTDAQGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 239
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 240 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 299
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 300 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIRFLFLPSEHDPDSYV 359
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 360 REFGAHAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 418
Query: 301 KIISSLSKIIKVSFNEINNLFKIN---TSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + + F E+ L ++ + + + + E + ++ L+ +P +
Sbjct: 419 QIMHMFADRLDIPFEEVAALSDVDARIAAPARQAPPRSERRRVTDSEKRALRTLVMHPRI 478
Query: 358 INEINSEDM 366
+++ E +
Sbjct: 479 ATQLDDEQL 487
>gi|167566504|ref|ZP_02359420.1| DNA primase [Burkholderia oklahomensis EO147]
Length = 625
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/380 (42%), Positives = 243/380 (63%), Gaps = 15/380 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK+RGL EI LRF LGYAP+ W L F DY + ++L
Sbjct: 129 MQTACDYYRKQLRGAPNAIQYLKRRGLTGEIALRFGLGYAPDGWQNLEAAFDDYRH-DSL 187
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + + V +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 188 VDAGLVI--VSEKTDANGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 241
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI Y L+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 242 LNSPETPLFNKGSELYGLFEARLAIRDHKYALVVEGYMDVVALAQLGFPNAVATLGTACT 301
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T++++FSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 302 PIHVQKLLRQTDTVVFSFDGDSAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 361
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E L + K+ ++ + + + +P +++LR
Sbjct: 362 REFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALFDAKPMLQALP-ANALRA 420
Query: 301 KIISSLSKIIKVSFNEINNLFKINT-----SSIKHKTIEKKNIQPICIEYQIMKLLISYP 355
+I+ ++ +++ F+E+ L +++ + E++ + E + ++ L+ +P
Sbjct: 421 QIMHMFAERLQIPFDEVAALVEVDARIAAPARQAPARSERRRV--TDNEKRALRNLVMHP 478
Query: 356 SLINEINSEDMIIFSKCSQN 375
+ ++ E + +N
Sbjct: 479 RIAATLDDESLATLRALPRN 498
>gi|407710090|ref|YP_006793954.1| DNA primase [Burkholderia phenoliruptrix BR3459a]
gi|407238773|gb|AFT88971.1| DNA primase [Burkholderia phenoliruptrix BR3459a]
Length = 622
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/367 (44%), Positives = 242/367 (65%), Gaps = 11/367 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LKKRGL EI RF LGYAP+ W L F +Y + ++L
Sbjct: 126 MQTACDYYRKQLRGAPGAIQYLKKRGLTGEIAARFGLGYAPDGWQNLEAAFPNYRD-DSL 184
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+ + K + + +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 185 VESGLVI--VSEKADGQ---GQNRRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 238
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + GYVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 239 LNSPETPLFNKGSELYGLFEARLAIREQGYVLVVEGYMDVVALAQLGFQNAVATLGTACT 298
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K++ T+++IFSFDGD AGRRAARRAL+ CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 299 PVHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTIRFLFLPAEHDPDSYV 358
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + F+++V A+ L QF L E++ L + ++ ++ + L + +P +++LR
Sbjct: 359 REFGTEAFAEQVERAIPLSQFMLNEVLAGKELDQPEGKARALFDAKPLLQALP-ANALRA 417
Query: 301 KIISSLSKIIKVSFNEINNLFKIN---TSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + V F+E+ L +++ ++ + K IE + ++ L+ YP
Sbjct: 418 QIMHMFADRLDVPFDEVAALCEVDARIAAAARSAPARKDRRSVTGIEEKTLRNLVMYPRT 477
Query: 358 INEINSE 364
+ ++ E
Sbjct: 478 VAVLDEE 484
>gi|17546935|ref|NP_520337.1| DNA primase [Ralstonia solanacearum GMI1000]
gi|17429235|emb|CAD15923.1| probable dna primase protein [Ralstonia solanacearum GMI1000]
Length = 603
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 160/372 (43%), Positives = 239/372 (64%), Gaps = 15/372 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M ASD Y+ QL+ + A+ +LK RGL EI F LGYAP++W +L VF Y +
Sbjct: 120 MARASDHYRKQLRGAPGAVQYLKGRGLTGEIAGHFGLGYAPDDWQSLESVFGAYRDDAIA 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +GLV++ + +++RYDRFR RIMFPI+NT G +IGFGGR++ E
Sbjct: 180 TPLIEAGLVIESEKTDADG-----RHRRYDRFRDRIMFPIRNTKGVVIGFGGRVL-GQGE 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA+NAI + GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 234 PKYLNSPETPLFSKGTELYGLFEARNAIREFGYVLVVEGYMDVVALAQLGFANAVATLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT H++K+L +++IFSFDGD AGRRAARRALE CL + TD+KI+KFLFLP ++DPD
Sbjct: 294 ACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKIVKFLFLPPEHDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
++IR+ G + F+ +V AM L +F L+ + + +L+ + +++Y + L +P
Sbjct: 354 TFIREEGTEAFAAEVRNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKPLLSAMP-PGG 412
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ-----PICIEYQIMKLLI 352
LR +I+ L+++ + +I L + + + + +K + P +E ++++LL+
Sbjct: 413 LRLQIVRGLAEMTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTALEQKVLRLLM 472
Query: 353 SYPSLINEINSE 364
YP+L ++++
Sbjct: 473 RYPALAARLDAD 484
>gi|167573585|ref|ZP_02366459.1| DNA primase [Burkholderia oklahomensis C6786]
Length = 625
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/380 (42%), Positives = 243/380 (63%), Gaps = 15/380 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK+RGL EI LRF LGYAP+ W L F DY + ++L
Sbjct: 129 MQTACDYYRKQLRGAPNAIQYLKRRGLTGEIALRFGLGYAPDGWQNLEAAFDDYRH-DSL 187
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + + V +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 188 VDAGLVI--VSEKTDANGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 241
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI Y L+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 242 LNSPETPLFNKGSELYGLFEARLAIRDHKYALVVEGYMDVVALAQLGFPNAVATLGTACT 301
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T++++FSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 302 PIHVQKLLRQTDTVVFSFDGDSAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 361
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E L + K+ ++ + + + +P +++LR
Sbjct: 362 REFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALFDAKPMLQALP-ANALRA 420
Query: 301 KIISSLSKIIKVSFNEINNLFKINT-----SSIKHKTIEKKNIQPICIEYQIMKLLISYP 355
+I+ ++ +++ F+E+ L +++ + E++ + E + ++ L+ +P
Sbjct: 421 QIMHMFAERLQIPFDEVAALVEVDARIAAPARQAPARSERRRV--TDNEKRALRNLVMHP 478
Query: 356 SLINEINSEDMIIFSKCSQN 375
+ ++ E + +N
Sbjct: 479 RIAATLDDESLATLRALPRN 498
>gi|145589879|ref|YP_001156476.1| DNA primase [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145048285|gb|ABP34912.1| DNA primase [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 645
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/349 (44%), Positives = 214/349 (61%), Gaps = 14/349 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M A+D+Y+ QLK + A+ +LK RGL EI R++LGYAP+ W L VF Y+N
Sbjct: 119 MSSAADWYRQQLKGNTRAVEYLKGRGLTGEIAKRYSLGYAPDGWQGLEAVFGPYSNDEVA 178
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
TL GL++ + +PV KRYDRFR R+MFPI+N GQ IGFGGR++ D E
Sbjct: 179 KTLVEGGLIIQG--EQAEGAPV----KRYDRFRDRVMFPIRNPKGQTIGFGGRIL-DQGE 231
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K N LYGLFEA+ AI YVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 232 PKYLNSPETPLFSKGNTLYGLFEARQAIRAQEYVLVCEGYMDVVALAQLGFPNAVATLGT 291
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT+ H++ +L T+ I+FSFDGD AG+RAA+RALE CL +DDK I+FLFLP ++DPD
Sbjct: 292 ACTANHVRMLLRQTDRIVFSFDGDSAGQRAAQRALEACLPLMSDDKEIRFLFLPTEHDPD 351
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SY+R +G F K + EAMS+ FF + + L T + + + + L +P +
Sbjct: 352 SYVRAYGAPAFEKVIKEAMSISSFFFKIASEGHELTTPEGRAHTHHAAKPLLLSMP-PIA 410
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQ 346
LR +I+ L+ + E+ + ++ ++K+ QP Q
Sbjct: 411 LRTQILRELAIRTNTTPAELEAFCGL---TVVPAPVQKQAYQPTQARSQ 456
>gi|421891292|ref|ZP_16322101.1| DNA primase [Ralstonia solanacearum K60-1]
gi|378963335|emb|CCF98849.1| DNA primase [Ralstonia solanacearum K60-1]
Length = 603
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/442 (38%), Positives = 263/442 (59%), Gaps = 20/442 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M A D Y+ QL+++ AI +LK RGL EI F LGYAP++W +L VF Y +
Sbjct: 120 MARAGDHYRKQLRSAANAIQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYRDDAIA 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +GLV++ + +++RYDRFR RIMFPI+NT G +IGFGGR++ E
Sbjct: 180 VPLIEAGLVIESEKTDADG-----RHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLG-QGE 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA+NAI + GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 234 PKYLNSPETPLFSKGTELYGLFEARNAIREFGYVLVVEGYMDVVALAQLGFANAVATLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT H++K+L +++IFSFDGD AGRRAARRALE CL + TD+KI+KFLFLP ++DPD
Sbjct: 294 ACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKIVKFLFLPPEHDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
++IR+ G + F+ +V AM L +F L+ + + +L+ + +++Y + L +P
Sbjct: 354 TFIREEGTEAFAAEVRNAMPLSRFLLQAVSEDLDLRQPEGRARAQYEAKPLLSAMP-PGG 412
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ-----PICIEYQIMKLLI 352
LR +I+ L+++ + +I L + + + + +K + P +E ++++LL+
Sbjct: 413 LRLQIVRGLAELTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTALEQKVLRLLM 472
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKIN--KNF 410
YP+L ++++ + ++ L+ ++ F++ L + + F
Sbjct: 473 RYPALAARLDADTRAQLTAPELPQGEVLSGLLTECDAVSPEMHFGAFVERLGQTPHAEAF 532
Query: 411 ESIIVKIQDNFEYSIEIAKKTL 432
+ V + D+ IE+ TL
Sbjct: 533 AGLRVAVLDD---DIELEPATL 551
>gi|238024933|ref|YP_002909165.1| DNA primase [Burkholderia glumae BGR1]
gi|237879598|gb|ACR31930.1| DNA primase [Burkholderia glumae BGR1]
Length = 628
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 163/378 (43%), Positives = 240/378 (63%), Gaps = 11/378 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LKKRGL EI LRF LGYAP+ W L + F DY L
Sbjct: 132 MQTACDYYRKQLRGAPNAIQYLKKRGLTGEIALRFGLGYAPDGWQNLEEAFEDYRR-EEL 190
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + +RYDRFR RIMFPI+N G +IGFGGR++ DS E KY
Sbjct: 191 VEAGLVI--VSEKTDAQGAA---RRYDRFRERIMFPIRNVKGAVIGFGGRVL-DSGEPKY 244
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + Y L+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 245 LNSPETPLFNKGSELYGLFEARLAIREHKYALVVEGYMDVVALAQLGFPNAVATLGTACT 304
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T++++FSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 305 PIHVQKLLRQTDTVVFSFDGDSAGRRAARRALEACLPHAADNRTIRFLFLPAEHDPDSYV 364
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E I + L + K+ ++ + L + +P +++LR
Sbjct: 365 REFGADAFSEQVRRAMPLSQFLLNEAIRDKELDQPEGRAKALFDAKPLLQALP-ANALRA 423
Query: 301 KIISSLSKIIKVSFNEINNLFKINT---SSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ + + + F E+ +L +++ + ++ + E + ++ LI +P +
Sbjct: 424 QIMHMFADRLDIPFEEVASLSEVDARIPAPLRQAPARNDRRRVTDQEKRALRNLIMHPRI 483
Query: 358 INEINSEDMIIFSKCSQN 375
++ +++ +N
Sbjct: 484 AMLLDDDEIATLRGLPRN 501
>gi|344167292|emb|CCA79500.1| DNA primase [blood disease bacterium R229]
Length = 603
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 163/414 (39%), Positives = 252/414 (60%), Gaps = 15/414 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M ASD Y+ QL+++ A+ +LK RGL EI F LGYAP++W +L VF Y +
Sbjct: 120 MARASDHYRKQLRSAPNAVQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYRDDAIA 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +GLV++ + +++RYDRFR RIMFPI+NT G +IGFGGR++ E
Sbjct: 180 VPLIEAGLVIESEKTDADG-----RHRRYDRFRDRIMFPIRNTKGVVIGFGGRVL-GQGE 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA+NAI + GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 234 PKYLNSPETPLFSKGTELYGLFEARNAIREFGYVLVVEGYMDVVALAQLGFANAVATLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT H++K+L +++IFSFDGD AGRRAARRALE CL + TD+K +KFLFLP ++DPD
Sbjct: 294 ACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKTVKFLFLPPEHDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
++IR+ G + F+ +V AM L +F L+ + + +L+ + +++Y + L +P
Sbjct: 354 TFIREEGTEAFAAEVRNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKPLLSAMP-PGG 412
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ-----PICIEYQIMKLLI 352
LR +I+ L+++ + +I L + + + + +K + P +E ++++LL+
Sbjct: 413 LRLQIVRGLAEMTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTALEQKVLRLLM 472
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKI 406
YP+L ++ + + +M L+ + ++ F++ L ++
Sbjct: 473 RYPALAARLDVDTRTQLTAPELPQGEMLSGLLAECDVAGPEMHFGAFVERLGQM 526
>gi|134292972|ref|YP_001116708.1| DNA primase [Burkholderia vietnamiensis G4]
gi|134136129|gb|ABO57243.1| DNA primase [Burkholderia vietnamiensis G4]
Length = 623
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 165/371 (44%), Positives = 236/371 (63%), Gaps = 15/371 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + ++L
Sbjct: 127 MSVACDYYRKQLRGATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLESAFPDYRD-DSL 185
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+ + K + +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 186 VESGLVI--VSEKTDAQGAA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 239
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 240 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 299
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 300 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 359
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 360 REFGADAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 418
Query: 301 KIISSLSKIIKVSFNEINNLFKINT-----SSIKHKTIEKKNIQPICIEYQIMKLLISYP 355
+I+ + + + F E+ L +++ E++ + E + ++ L+ YP
Sbjct: 419 QIMHMFADRLHIPFEEVAALSEVDARIAAAPRQAPARSERRRV--TDSEKRALRTLVMYP 476
Query: 356 SLINEINSEDM 366
+ ++ E +
Sbjct: 477 RIATALDDEQL 487
>gi|387904764|ref|YP_006335102.1| DNA primase [Burkholderia sp. KJ006]
gi|387579656|gb|AFJ88371.1| DNA primase [Burkholderia sp. KJ006]
Length = 623
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 165/371 (44%), Positives = 236/371 (63%), Gaps = 15/371 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + ++L
Sbjct: 127 MSVACDYYRKQLRGATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLESAFPDYRD-DSL 185
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+ + K + +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 186 VESGLVI--VSEKTDAQGAA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 239
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 240 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 299
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 300 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 359
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 360 REFGADAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 418
Query: 301 KIISSLSKIIKVSFNEINNLFKINT-----SSIKHKTIEKKNIQPICIEYQIMKLLISYP 355
+I+ + + + F E+ L +++ E++ + E + ++ L+ YP
Sbjct: 419 QIMHMFADRLHIPFEEVAALSEVDARIAAAPRQAPARSERRRV--TDSEKRALRTLVMYP 476
Query: 356 SLINEINSEDM 366
+ ++ E +
Sbjct: 477 RIATALDDEQL 487
>gi|300703498|ref|YP_003745100.1| DNA primase [Ralstonia solanacearum CFBP2957]
gi|299071161|emb|CBJ42475.1| DNA primase [Ralstonia solanacearum CFBP2957]
Length = 603
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 169/441 (38%), Positives = 262/441 (59%), Gaps = 20/441 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M A D Y+ QL+++ AI +LK RGL EI F LGYAP++W +L VF Y +
Sbjct: 120 MARAGDHYRKQLRSAANAIQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYRDDAIA 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +GLV++ + +++RYDRFR RIMFPI+NT G +IGFGGR++ E
Sbjct: 180 VPLIEAGLVIESEKTDADG-----RHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLG-QGE 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA+NAI + GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 234 PKYLNSPETPLFSKGTELYGLFEARNAIREFGYVLVVEGYMDVVALAQLGFANAVATLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT H++K+L +++IFSFDGD AGRRAARRALE CL + TD+KI+KFLFLP ++DPD
Sbjct: 294 ACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKIVKFLFLPPEHDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
++IR+ G + F+ +V AM L +F L+ + + +L+ + +++Y + L +P
Sbjct: 354 TFIREEGTEAFAAEVRNAMPLSRFLLQAVSEDLDLRQPEGRARAQYEAKPLLSAMP-PGG 412
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ-----PICIEYQIMKLLI 352
LR +I+ L+++ + +I L + + + + +K + P +E ++++LL+
Sbjct: 413 LRLQIVRGLAEMTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTALEQKVLRLLM 472
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKIN--KNF 410
YP+L ++++ + ++ L+ ++ F++ L + + F
Sbjct: 473 RYPALAARLDADTRAQLTAPELPQGEVLSGLLTECDAVGPEVHFGAFVERLGQTPYAEAF 532
Query: 411 ESIIVKIQDNFEYSIEIAKKT 431
+ V + D+ IE+ T
Sbjct: 533 AGLRVAVLDD---DIELEPAT 550
>gi|83746508|ref|ZP_00943559.1| DNA primase [Ralstonia solanacearum UW551]
gi|83726839|gb|EAP73966.1| DNA primase [Ralstonia solanacearum UW551]
Length = 603
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 169/448 (37%), Positives = 266/448 (59%), Gaps = 18/448 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M A D Y+ QL+++ AI +LK RGL EI F LGYAP++W +L VF Y +
Sbjct: 120 MARAGDHYRKQLRSAANAIQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYRDDAIA 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +GLV++ + +++RYDRFR RIMFPI+NT G +IGFGGR++ E
Sbjct: 180 VPLIEAGLVIESEKTDADG-----RHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLG-QGE 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA+NAI + GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 234 PKYLNSPETPLFSKGTELYGLFEARNAIREFGYVLVVEGYMDVVALAQLGFANAVATLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT H++K+L +++IFSFDGD AGRRAARRALE CL + TD+K++KFLFLP ++DPD
Sbjct: 294 ACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKVVKFLFLPPEHDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
++IR+ G + F+ +V AM L +F L+ + + +L+ + +++Y + L +P
Sbjct: 354 TFIREEGTEAFAAEVRNAMPLSRFLLQAVSEDLDLRQPEGRARAQYEAKPLLSAMP-PGG 412
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ-----PICIEYQIMKLLI 352
LR +I+ L+++ + +I L + + + + +K + P +E ++++LL+
Sbjct: 413 LRLQIVRGLAEMTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTALEQKVLRLLM 472
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKIN--KNF 410
YP+L ++++ + ++ L+ ++ F++ L + + F
Sbjct: 473 RYPALAARLDADTRAQLTAPELPQGEVLSGLLTECDAVGPEMHFGAFVERLGQTPYAEAF 532
Query: 411 ESIIVKIQDNFEYSIEIAKKTLLDAIYK 438
+ V + D+ + +E A + A+ K
Sbjct: 533 AGLRVAVLDD-DIELEPATQEFDAAVQK 559
>gi|300690866|ref|YP_003751861.1| DNA primase [Ralstonia solanacearum PSI07]
gi|299077926|emb|CBJ50565.1| DNA primase [Ralstonia solanacearum PSI07]
gi|344171947|emb|CCA84573.1| DNA primase [Ralstonia syzygii R24]
Length = 603
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 163/413 (39%), Positives = 251/413 (60%), Gaps = 15/413 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M ASD Y+ QL+++ A+ +LK RGL EI F LGYAP++W +L VF Y +
Sbjct: 120 MARASDHYRKQLRSAPNAVQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYRDDAIA 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +GLV++ + +++RYDRFR RIMFPI+NT G +IGFGGR++ E
Sbjct: 180 VPLIEAGLVIESEKTDADG-----RHRRYDRFRDRIMFPIRNTKGVVIGFGGRVL-GQGE 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA+NAI + GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 234 PKYLNSPETPLFSKGTELYGLFEARNAIREFGYVLVVEGYMDVVALAQLGFANAVATLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT H++K+L +++IFSFDGD AGRRAARRALE CL + TD+K +KFLFLP ++DPD
Sbjct: 294 ACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKTVKFLFLPPEHDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
++IR+ G + F+ +V AM L +F L+ + + +L+ + +++Y + L +P
Sbjct: 354 TFIREEGTEAFAAEVRNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKPLLSAMP-PGG 412
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ-----PICIEYQIMKLLI 352
LR +I+ L+++ + +I L + + + + +K + P +E ++++LL+
Sbjct: 413 LRLQIVRGLAEMTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTALEQKVLRLLM 472
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKK 405
YP+L ++ + + +M L+ + ++ F++ L +
Sbjct: 473 RYPALAARLDVDTRTQLTAPELPQGEMLSGLLAECDVAGPEMHFGAFVERLGQ 525
>gi|221197052|ref|ZP_03570099.1| DNA primase [Burkholderia multivorans CGD2M]
gi|221203724|ref|ZP_03576742.1| DNA primase [Burkholderia multivorans CGD2]
gi|421468337|ref|ZP_15916889.1| DNA primase [Burkholderia multivorans ATCC BAA-247]
gi|221175890|gb|EEE08319.1| DNA primase [Burkholderia multivorans CGD2]
gi|221183606|gb|EEE16006.1| DNA primase [Burkholderia multivorans CGD2M]
gi|400232192|gb|EJO61828.1| DNA primase [Burkholderia multivorans ATCC BAA-247]
Length = 621
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 159/325 (48%), Positives = 218/325 (67%), Gaps = 8/325 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + + L
Sbjct: 125 MATACDYYRKQLRGAPAAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAAFPDYRD-DAL 183
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+ + K + +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 184 VESGLVI--VSEKTDAQGAA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 237
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 238 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 297
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 298 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 357
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS +V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 358 REFGADAFSDQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 416
Query: 301 KIISSLSKIIKVSFNEINNLFKINT 325
+I+ ++ + + F E+ L +++
Sbjct: 417 QIMHMIADRLDIPFEEVAALSEVDA 441
>gi|187921408|ref|YP_001890440.1| DNA primase [Burkholderia phytofirmans PsJN]
gi|187719846|gb|ACD21069.1| DNA primase [Burkholderia phytofirmans PsJN]
Length = 623
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 162/367 (44%), Positives = 240/367 (65%), Gaps = 11/367 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A DFY+ QL+++ AI +LKKRGL EI RF LGYAP+ W L F +Y + + L
Sbjct: 127 MQTACDFYRKQLRSAPVAIQYLKKRGLTGEIAARFGLGYAPDGWQNLEPAFPNYRD-DAL 185
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV I+++ +S + +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 186 VESGLV---IVSE--KSDAQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 239
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 240 LNSPETPLFNKGSELYGLFEARLAIREQHYVLVVEGYMDVVALAQLGFQNAVATLGTACT 299
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K++ T+++IFSFDGD AGRRAARRAL+ CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 300 PIHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTIRFLFLPSEHDPDSYV 359
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R++G + F+++V AM L QF L E++ L + ++ ++ + L + +P +++LR
Sbjct: 360 REYGTEAFAEQVERAMPLSQFMLNEVLTGKELDQPEGRARALFDAKPLLQALP-ANALRA 418
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPIC---IEYQIMKLLISYPSL 357
+I+ + + V F+E+ L ++++ IE + ++ L+ YP
Sbjct: 419 QIMHMFADRLDVPFDEVAALCEVDSRIAAAARAAPARKDRRSVTGIEEKTLRNLVMYPRT 478
Query: 358 INEINSE 364
+ ++ E
Sbjct: 479 VGVLDEE 485
>gi|332528541|ref|ZP_08404529.1| DNA primase [Hylemonella gracilis ATCC 19624]
gi|332042052|gb|EGI78390.1| DNA primase [Hylemonella gracilis ATCC 19624]
Length = 659
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 149/331 (45%), Positives = 215/331 (64%), Gaps = 9/331 (2%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A Y+ LK S AI +LK RGL+ EI LRF LGYAP W +L VF Y++ L S
Sbjct: 125 AGAAYRKHLKGSPRAIGYLKGRGLSGEIALRFGLGYAPEGWRSLASVFPSYDD-PLLVES 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+ + + KRYDRFR RIMFPI+N G+ IGFGGR++ D + KY+NS
Sbjct: 184 GLVISS--EGEGGATAKGEAKRYDRFRDRIMFPIRNVKGECIGFGGRVLGD-EKPKYLNS 240
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+F K ELYGL+EA+NAI +GYVL+TEGYMDV+ L+Q GF VA LGTACT H
Sbjct: 241 PETPVFSKGLELYGLYEARNAIRDAGYVLVTEGYMDVVALAQLGFPNAVATLGTACTPDH 300
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPD---KYDPDSYI 240
++K+ +T+S++FSFDGD+AGRRA+RRALE L YA+D + ++FLFLP K+DPDSYI
Sbjct: 301 LQKLFRFTDSVVFSFDGDEAGRRASRRALEAALPYASDTRTVRFLFLPTQPKKHDPDSYI 360
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+ G + F+ V EA L +F ++ +L + + + + + L++ +P +L+
Sbjct: 361 REHGREAFAHCVSEATPLSRFLIDSAREGCDLSSAEGRARLGVHAQPLWEALP-DGALKR 419
Query: 301 KIISSLSKIIKVSFNEINNLFK-INTSSIKH 330
+++ ++ ++++ E+ +L+ S +H
Sbjct: 420 QLLGEIASLVQLDAQELGSLWADARARSQRH 450
>gi|307726544|ref|YP_003909757.1| DNA primase [Burkholderia sp. CCGE1003]
gi|307587069|gb|ADN60466.1| DNA primase [Burkholderia sp. CCGE1003]
Length = 622
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 162/369 (43%), Positives = 243/369 (65%), Gaps = 15/369 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LKKRGL EI RF LGYAP+ W L F +Y + + L
Sbjct: 126 MQTACDYYRKQLRGAPAAIQYLKKRGLTGEIAARFGLGYAPDGWQNLEAAFPNYRD-DAL 184
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV I+++ +S + +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 185 VESGLV---IVSE--KSDGQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 238
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 239 LNSPETPLFNKGSELYGLFEARLAIREQHYVLVVEGYMDVVALAQLGFQNAVATLGTACT 298
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K++ T+++IFSFDGD AGRRAARRAL+ CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 299 PVHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTIRFLFLPAEHDPDSYV 358
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG F+++V AM L QF L E++ L + ++ ++ + L + +P +++LR
Sbjct: 359 REFGTAAFAEQVERAMPLSQFMLNEVLAGKELDQPEGKARALFDAKPLLQALP-ANALRA 417
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTI-----EKKNIQPICIEYQIMKLLISYP 355
+I+ + + V F+E+ L ++++ +++++ IE + ++ L+ YP
Sbjct: 418 QIMHMFADRLDVPFDEVAALCEVDSRIAAAARSAPARKDRRSV--TGIEEKTLRNLVMYP 475
Query: 356 SLINEINSE 364
+ ++ E
Sbjct: 476 RTVAVLDEE 484
>gi|386332882|ref|YP_006029051.1| DNA primase [Ralstonia solanacearum Po82]
gi|334195330|gb|AEG68515.1| DNA primase [Ralstonia solanacearum Po82]
Length = 603
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 168/442 (38%), Positives = 263/442 (59%), Gaps = 20/442 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M A D Y+ QL+++ AI +LK RGL EI F LGYAP++W +L VF Y +
Sbjct: 120 MARAGDHYRKQLRSAANAIQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYRDDAIA 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +GLV++ + +++RYDRFR RIMFPI+NT G +IGFGGR++ E
Sbjct: 180 VPLIEAGLVIESEKTDADG-----RHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLG-QGE 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA+NAI + GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 234 PKYLNSPETPLFSKGTELYGLFEARNAIREFGYVLVVEGYMDVVALAQLGFANAVATLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT H++K+L +++IFSFDGD AGRRAARRALE CL + TD+K++KFLFLP ++DPD
Sbjct: 294 ACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKVVKFLFLPPEHDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
++IR+ G + F+ +V AM L +F L+ + + +L+ + +++Y + L +P
Sbjct: 354 TFIREEGTEAFAAEVRNAMPLSRFLLQAVSEDLDLRQPEGRARAQYEAKPLLSAMP-PGG 412
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ-----PICIEYQIMKLLI 352
LR +I+ L+++ + +I L + + + + +K + P +E ++++LL+
Sbjct: 413 LRLQIVRGLAEMTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTALEQKVLRLLM 472
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKIN--KNF 410
YP+L ++++ + ++ L+ ++ F++ L + + F
Sbjct: 473 RYPALAARLDADTRAQLTAPELPQGEVLSGLLTECDAVGPEMHFGAFVERLGQTPYAEAF 532
Query: 411 ESIIVKIQDNFEYSIEIAKKTL 432
+ + + D+ IE+ TL
Sbjct: 533 AGLRMAVLDD---DIELEPATL 551
>gi|416995856|ref|ZP_11939115.1| DNA primase [Burkholderia sp. TJI49]
gi|325518127|gb|EGC97913.1| DNA primase [Burkholderia sp. TJI49]
Length = 625
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 162/369 (43%), Positives = 236/369 (63%), Gaps = 15/369 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F DY + + L
Sbjct: 129 MSTACDYYRKQLRGATAAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAAFPDYRD-DAL 187
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + V +RYDRFR RIMFPI+N GQ+IGFGGR++ + E KY
Sbjct: 188 VEAGLVI--VSEKTDAQGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-AGEPKY 241
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + Y L+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 242 LNSPETPLFNKGSELYGLFEARLAIRERKYALVVEGYMDVVALAQLGFPNAVATLGTACT 301
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 302 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 361
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 362 REFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 420
Query: 301 KIISSLSKIIKVSFNEINNLFKINT-----SSIKHKTIEKKNIQPICIEYQIMKLLISYP 355
+I+ + + + F E+ L ++ +++ + E + ++ L+ +P
Sbjct: 421 QIMHMFADRLDIPFEEVAGLSDVDARIAAAPRQAPARSDRRRV--TDSEKRALRTLVMHP 478
Query: 356 SLINEINSE 364
L ++++ E
Sbjct: 479 RLASQLDDE 487
>gi|398804563|ref|ZP_10563556.1| DNA primase, catalytic core [Polaromonas sp. CF318]
gi|398093560|gb|EJL83938.1| DNA primase, catalytic core [Polaromonas sp. CF318]
Length = 665
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/363 (41%), Positives = 223/363 (61%), Gaps = 17/363 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A Y L+NS+ AI++ K RG++ EI F LGYAP W +L VF DYN+ L S
Sbjct: 125 AGTAYIKALRNSERAIDYFKGRGVSGEIAKTFGLGYAPEGWRSLASVFPDYND-PLLVES 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+ + NQ+ + KRYDRFR R+MFPI+N G+ IGFGGR++ D + KY+NS
Sbjct: 184 GLVITGEPGEENQA---GEAKRYDRFRDRVMFPIRNVKGECIGFGGRVLGD-EKPKYLNS 239
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+F K ELYGLFEA+ A+ + GY L+TEGYMDV+ L+Q GF VA LGTACT+ H
Sbjct: 240 PETPVFSKGRELYGLFEARTALREHGYALVTEGYMDVVALAQLGFANAVATLGTACTADH 299
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+ +T+S++FSFDGD AGRRAAR+AL+ L +ATD + +KFLFLP ++DPDSYIR+
Sbjct: 300 VQKLFRFTDSVVFSFDGDSAGRRAARKALDAALPFATDVRTVKFLFLPAEHDPDSYIREH 359
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F+ V +A+ L +F LE +L T + N L+ ++P +L+ +++
Sbjct: 360 GKEGFAAYVSKAVPLSRFLLEAAAEGCDLDTAEGRAHMASNARPLWGLMP-DGALKRQLL 418
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIK-----------HKTIEKKNIQPICIEYQIMKLLI 352
+ ++ + + E+ L++ +S K +++ P + + M
Sbjct: 419 AEIADKVLIDSRELLQLWQPASSGYKSGNKNSGGPRGQSKGHRQDAAPAPVHHADMPDPG 478
Query: 353 SYP 355
YP
Sbjct: 479 GYP 481
>gi|421476973|ref|ZP_15924826.1| DNA primase [Burkholderia multivorans CF2]
gi|400227288|gb|EJO57295.1| DNA primase [Burkholderia multivorans CF2]
Length = 623
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/325 (48%), Positives = 218/325 (67%), Gaps = 8/325 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F +Y + + L
Sbjct: 127 MAAACDYYRKQLRGAPAAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAAFPNYRD-DAL 185
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+ + K + +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 186 VESGLVI--VSEKTDAQGAA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 239
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 240 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 299
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 300 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 359
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS +V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 360 REFGADAFSDQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 418
Query: 301 KIISSLSKIIKVSFNEINNLFKINT 325
+I+ ++ + + F E+ L +++
Sbjct: 419 QIMHMIADRLDIPFEEVAALSEVDA 443
>gi|171464017|ref|YP_001798130.1| DNA primase [Polynucleobacter necessarius subsp. necessarius STIR1]
gi|171193555|gb|ACB44516.1| DNA primase [Polynucleobacter necessarius subsp. necessarius STIR1]
Length = 652
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/344 (44%), Positives = 211/344 (61%), Gaps = 13/344 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M A+D+Y+ QLK + A+ +LK RGL EI R+ LGYAP+ W L VF Y+N
Sbjct: 119 MSSAADWYRQQLKGNTRAVEYLKGRGLTGEIAKRYALGYAPDGWQGLETVFGAYSNDEVA 178
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
TL SGL++ + +QS KRYDRFR RIMFPI+N GQ IGFGGR++ D E
Sbjct: 179 KTLLESGLLIQSEQAEGSQS-----MKRYDRFRDRIMFPIRNPKGQTIGFGGRIL-DQGE 232
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K N LYGLFEA+ AI YVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 233 PKYLNSPETPLFSKGNTLYGLFEARQAIRAQEYVLVCEGYMDVVALAQLGFPNAVATLGT 292
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT+ H++ +L T+ ++FSFDGD AG+RAA+RALE CL +DDK I FLFLP ++DPD
Sbjct: 293 ACTANHVRMLLRQTDKVVFSFDGDSAGQRAAQRALEACLPLMSDDKEIHFLFLPTEHDPD 352
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SY+R +G F K + EA S+ FF + + + L T + + + + L +P +
Sbjct: 353 SYVRAYGAPAFEKVIKEATSISSFFFKVVSEGHELTTPEGRAHTHHAAKPLLLSMP-PIA 411
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPI 341
LR +I+ L+ + E+ + ++ + + QP+
Sbjct: 412 LRTQILRELAIRTNTTPAELEAFCGL---TVAPAPVRQTTYQPM 452
>gi|456064019|ref|YP_007502989.1| DNA primase [beta proteobacterium CB]
gi|455441316|gb|AGG34254.1| DNA primase [beta proteobacterium CB]
Length = 649
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/310 (48%), Positives = 201/310 (64%), Gaps = 10/310 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M A+D+Y+ QLK + A+ +LK RGL EI R+ LGYAP+ W L VF Y N
Sbjct: 119 MSAAADWYRQQLKVAPRAVEYLKGRGLTGEIAKRYALGYAPDGWQGLEAVFGTYANDEVA 178
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
TL GL++ + NQ+ +RYDRFR RIMFPI+N GQ IGFGGR++ D E
Sbjct: 179 KTLLEGGLLIQSEQAENNQT-----ARRYDRFRDRIMFPIRNPKGQTIGFGGRIL-DQGE 232
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K N LYGLFEA+ AI YVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 233 PKYLNSPETPLFSKGNTLYGLFEARQAIRSQEYVLVCEGYMDVVALAQLGFPNAVATLGT 292
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT+ H++ +L T+ ++FSFDGD AG+RAA+RALE CL +DDK I+FLFLP ++DPD
Sbjct: 293 ACTANHVRMLLRQTDRVVFSFDGDSAGQRAAQRALEACLPLMSDDKEIRFLFLPTEHDPD 352
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SY+R +G F K + EAMS+ FF + ++ L T + ++ + + L +P +
Sbjct: 353 SYVRAYGAPAFEKVIKEAMSISSFFFKIASQDHELTTPEGRAQTHHAAKPLLLSMP-PIA 411
Query: 298 LRFKIISSLS 307
LR +I+ L+
Sbjct: 412 LRTQILRELA 421
>gi|348617641|ref|ZP_08884178.1| DNA primase [Candidatus Glomeribacter gigasporarum BEG34]
gi|347817118|emb|CCD28797.1| DNA primase [Candidatus Glomeribacter gigasporarum BEG34]
Length = 621
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 246/378 (65%), Gaps = 11/378 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M ASD+Y+ QL+ + AI +LK RGL+ EI RF LGYAP+ W L ++F D + L
Sbjct: 121 MQRASDYYREQLRAAPAAIAYLKHRGLSGEIAKRFGLGYAPHGWQHLAQIFPD-QPYDAL 179
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GL++++ N+ N P +RYDRFR RIMFPI+N Q++GFG R+I + E KY
Sbjct: 180 VEAGLMIEREPNEANGPP-----RRYDRFRDRIMFPIRNLRAQVMGFGARVI-ERGEPKY 233
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+KS ELYGLFEA+ AI + GY L+ EGY+D + L+Q GF TVA LGTACT
Sbjct: 234 LNSPETPLFNKSRELYGLFEARAAIREHGYALVVEGYLDALALAQMGFPNTVATLGTACT 293
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
S H++K+L +T+ I+F FDGD+AGRRAARRALE CL +A D + ++FLFLP ++DPDSYI
Sbjct: 294 SLHVQKLLRHTDHIVFGFDGDEAGRRAARRALEACLPHAGDHRTVRFLFLPSEHDPDSYI 353
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R G F++ V A+ L QF L EI+ + + K+ ++ + L +++P ++ LR
Sbjct: 354 RARGAAAFAQAVKAALPLSQFLLNEILDSQTPDHPEGRAKALFHAKPLLQVLP-ANVLRA 412
Query: 301 KIISSLSKIIKVSFNEINNLF---KINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+I+ L++ +++ EI L +++ H + + E + ++ LI++P +
Sbjct: 413 QIVRQLAQRLELPVAEITALLDDTRLSARRATHIPVSGARRRVTANEQRALRTLIAWPRI 472
Query: 358 INEINSEDMIIFSKCSQN 375
+N++++ I ++ ++N
Sbjct: 473 AARLNADEIQILTRATRN 490
>gi|91777316|ref|YP_552524.1| DNA primase [Burkholderia xenovorans LB400]
gi|91689976|gb|ABE33174.1| DNA primase [Burkholderia xenovorans LB400]
Length = 622
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/325 (48%), Positives = 228/325 (70%), Gaps = 8/325 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A DFY+ QL+++ AI +LKKRGL EI RF LGYAP+ W L F +Y + ++L
Sbjct: 126 MQTACDFYRKQLRSAPVAIQYLKKRGLTGEIAARFGLGYAPDGWQNLEAAFPNYRD-DSL 184
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV I+++ +S + +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 185 VESGLV---IVSE--KSDAQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 238
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 239 LNSPETPLFNKGSELYGLFEARLAIREQHYVLVVEGYMDVVALAQLGFQNAVATLGTACT 298
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K++ T+++IFSFDGD AGRRAARRAL+ CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 299 PIHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTIRFLFLPAEHDPDSYV 358
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R++G + F+++V AM L QF L E++ L + ++ ++ + L + +P +++LR
Sbjct: 359 REYGTEAFAEQVERAMPLSQFMLNEVLTGKELDQPEGKARALFDAKPLLQALP-ANALRA 417
Query: 301 KIISSLSKIIKVSFNEINNLFKINT 325
+I+ + + V F+E+ L ++++
Sbjct: 418 QIMHMFADRLDVPFDEVAALCEVDS 442
>gi|161521350|ref|YP_001584777.1| DNA primase [Burkholderia multivorans ATCC 17616]
gi|160345400|gb|ABX18485.1| DNA primase [Burkholderia multivorans ATCC 17616]
Length = 636
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/325 (48%), Positives = 218/325 (67%), Gaps = 8/325 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F +Y + + L
Sbjct: 140 MATACDYYRKQLRGAPAAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAAFPNYRD-DAL 198
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+ + K + +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 199 VESGLVI--VSEKTDAQGAA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 252
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 253 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 312
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 313 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 372
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS +V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 373 REFGADAFSDQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 431
Query: 301 KIISSLSKIIKVSFNEINNLFKINT 325
+I+ ++ + + F E+ L +++
Sbjct: 432 QIMHMIADRLDIPFEEVAALSEVDA 456
>gi|189352483|ref|YP_001948110.1| DNA primase [Burkholderia multivorans ATCC 17616]
gi|189336505|dbj|BAG45574.1| DNA primase [Burkholderia multivorans ATCC 17616]
Length = 622
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/325 (48%), Positives = 218/325 (67%), Gaps = 8/325 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F +Y + + L
Sbjct: 126 MATACDYYRKQLRGAPAAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAAFPNYRD-DAL 184
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+ + K + +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 185 VESGLVI--VSEKTDAQGAA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 238
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 239 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 298
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 299 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 358
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS +V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 359 REFGADAFSDQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 417
Query: 301 KIISSLSKIIKVSFNEINNLFKINT 325
+I+ ++ + + F E+ L +++
Sbjct: 418 QIMHMIADRLDIPFEEVAALSEVDA 442
>gi|385206465|ref|ZP_10033335.1| DNA primase, catalytic core [Burkholderia sp. Ch1-1]
gi|385186356|gb|EIF35630.1| DNA primase, catalytic core [Burkholderia sp. Ch1-1]
Length = 622
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 155/325 (47%), Positives = 228/325 (70%), Gaps = 8/325 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A DFY+ QL+++ AI +LKKRGL EI RF LGYAP+ W L F +Y + ++L
Sbjct: 126 MQTACDFYRKQLRSAPVAIQYLKKRGLTGEIAARFGLGYAPDGWQNLEAAFPNYRD-DSL 184
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV I+++ +S + +RYDRFR R+MFPI+N GQ+IGFGGR++ D E KY
Sbjct: 185 VESGLV---IVSE--KSDAQGQNRRYDRFRERVMFPIRNVKGQVIGFGGRVL-DGGEPKY 238
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 239 LNSPETPLFNKGSELYGLFEARLAIREQHYVLVVEGYMDVVALAQLGFQNAVATLGTACT 298
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K++ T+++IFSFDGD AGRRAARRAL+ CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 299 PIHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTIRFLFLPAEHDPDSYV 358
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R++G + F+++V AM L QF L E++ L + ++ ++ + L + +P +++LR
Sbjct: 359 REYGTEAFAEQVERAMPLSQFMLNEVLTGKELDQPEGKARALFDAKPLLQALP-ANALRA 417
Query: 301 KIISSLSKIIKVSFNEINNLFKINT 325
+I+ + + V F+E+ L ++++
Sbjct: 418 QIMHMFADRLDVPFDEVAALCEVDS 442
>gi|221212354|ref|ZP_03585331.1| DNA primase [Burkholderia multivorans CGD1]
gi|221167453|gb|EED99922.1| DNA primase [Burkholderia multivorans CGD1]
Length = 621
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 158/325 (48%), Positives = 218/325 (67%), Gaps = 8/325 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK RGL EI RF LGYAP+ W L F +Y + + L
Sbjct: 125 MATACDYYRKQLRGAPAAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAAFPNYRD-DAL 183
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+ + K + +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 184 VESGLVI--VSEKTDAQGAA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 237
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 238 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 297
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 298 PIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 357
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS +V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 358 REFGADAFSDQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 416
Query: 301 KIISSLSKIIKVSFNEINNLFKINT 325
+I+ ++ + + F E+ L +++
Sbjct: 417 QIMHMIADRLDIPFEEVAALSEVDA 441
>gi|407938355|ref|YP_006853996.1| DNA primase [Acidovorax sp. KKS102]
gi|407896149|gb|AFU45358.1| DNA primase [Acidovorax sp. KKS102]
Length = 690
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 144/344 (41%), Positives = 219/344 (63%), Gaps = 17/344 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+D Y+ L+ S+ AI + K RG++ + R+ LGYAP W +L VF Y++ L S
Sbjct: 125 AADAYRRHLRESQRAIGYFKGRGVSGAVAKRYGLGYAPEGWRSLASVFPSYDD-PLLEES 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I+N + KRYDRFR R+MFPI+N G+ IGFGGR++ D ++ KY+NS
Sbjct: 184 GLV---IVNDEDGG------KRYDRFRDRVMFPIRNVKGEYIGFGGRVLGD-DKPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGLFEA+ I ++GY L+TEGYMDV+ L+Q GF VA LGTACT H
Sbjct: 234 PETPVFHKGRELYGLFEARTPIREAGYALVTEGYMDVVALAQLGFPNAVATLGTACTPEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+L +T++++FSFDGD AGRRAAR+AL+ L +ATD + IKFLFLP ++DPDS+IR+
Sbjct: 294 VQKLLRFTDAVVFSFDGDSAGRRAARKALDGALPHATDTRSIKFLFLPAEHDPDSFIREH 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F++ V +A L +F +E +L T + N L+ +P L+ +++
Sbjct: 354 GTDAFARHVEQATPLSRFLVEAASEGCDLATAEGRAHMASNARPLWTALP-DGVLKRQLL 412
Query: 304 SSLSKIIKVSFNEINNLFKINTS-----SIKHKTIEKKNIQPIC 342
L+++ +++ ++++L+ + + H +++ +P
Sbjct: 413 GELAELTQLNARDLSDLWGQAAARDGLRAAHHAPPQRQQPRPTA 456
>gi|167583911|ref|ZP_02376299.1| DNA primase [Burkholderia ubonensis Bu]
Length = 624
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 166/388 (42%), Positives = 249/388 (64%), Gaps = 12/388 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LKKRGL E+ RF LGYAP+ W L F DY + + L
Sbjct: 128 MAAACDYYRKQLRGAPAAIQYLKKRGLTGEVAARFGLGYAPDGWQNLEAAFPDYRD-DAL 186
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+ + K + V +RYDRFR RIMFPI+N GQ+IGFGGR++ S E KY
Sbjct: 187 VESGLVI--VSEKTDAQGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVLG-SGEPKY 240
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 241 LNSPETPLFNKGSELYGLFEARLAIRERKYVLVVEGYMDVVALAQLGFPNAVATLGTACT 300
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K++ T+++IFSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 301 PIHVQKLMRQTDTVIFSFDGDAAGRRAARRALEACLPHAADNRTIRFLFLPTEHDPDSYV 360
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E I L + K+ ++ + L + +P +++LR
Sbjct: 361 REFGADAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAKPLLQALP-ANALRA 419
Query: 301 KIISSLSKIIKVSFNEINNLFKINT--SSIKHKTIEKKNIQPICI-EYQIMKLLISYPSL 357
+I+ + + + F E+ L ++T ++ + + + + + E + ++ L+ +P +
Sbjct: 420 QIMHMFADRLDIPFEEVAGLSDVDTRLAAPPRQAPARSDRRRVTDNEKRALRNLVMHPRV 479
Query: 358 INEINSEDMIIFSKCSQNYVKMFFQLID 385
+++ E + + ++F +++D
Sbjct: 480 AVQLDDEQVATL-RALPRIGELFGEVVD 506
>gi|221068480|ref|ZP_03544585.1| DNA primase [Comamonas testosteroni KF-1]
gi|220713503|gb|EED68871.1| DNA primase [Comamonas testosteroni KF-1]
Length = 664
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 146/345 (42%), Positives = 217/345 (62%), Gaps = 16/345 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A + Y+ QLK + +AI +LKKRG++ E+ RF LGYAP W+ L VF +Y+N L
Sbjct: 125 AGESYRKQLKAAPKAIEYLKKRGVSGEVSKRFGLGYAPAGWHGLASVFAEYDNPQ-LEEC 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+ V + + +RYDRFR R+MFPI+N G+ IGFGGR+ D + KY+NS
Sbjct: 184 GLVI------VGE----DDSRRYDRFRDRLMFPIRNVKGECIGFGGRVFGD-EKPKYLNS 232
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGL+EA+ A+ GY L+TEGYMDV+ L+Q GF VA LGTACT H
Sbjct: 233 PETPVFHKGRELYGLYEARQALRDMGYALVTEGYMDVVALAQLGFANAVATLGTACTPEH 292
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+ +T++++FSFDGD AGRRAAR+AL+ L ATD + IKFLFLP ++DPDS+IR+F
Sbjct: 293 VQKLFRFTDAVVFSFDGDGAGRRAARKALDAALPLATDTRSIKFLFLPSEHDPDSFIREF 352
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + FS+ V +A L +F +E +L + N L+ ++P +L+ +++
Sbjct: 353 GPEAFSRYVGDATPLSRFLIESASEGCDLGQTEGRAHMASNARPLWSLLP-DGALKRQLL 411
Query: 304 SSLSKIIKVSFNEINNLF---KINTSSIKHKTIEKKNIQPICIEY 345
S ++ + ++ ++ +++ T+ I + P E+
Sbjct: 412 SEIAALAQLDSRDLTDIWAQEAARTAPISRRAPAAAPSGPQAPEW 456
>gi|377813352|ref|YP_005042601.1| DNA primase [Burkholderia sp. YI23]
gi|357938156|gb|AET91714.1| DNA primase [Burkholderia sp. YI23]
Length = 627
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 164/403 (40%), Positives = 245/403 (60%), Gaps = 26/403 (6%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A DFY+ QL+ + AI +LKKRGL E+ RF LGYAP+ W L F DY + N +
Sbjct: 125 MQTACDFYRKQLRGAPNAIAYLKKRGLTGEVAARFGLGYAPDGWQNLEAAFPDYRDENLV 184
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
S ++V + + Q+ +RYDRFR R+MFPI+N G +IGFGGR++ D E KY
Sbjct: 185 ESGLVIVSEKTDSQGQA------RRYDRFRERVMFPIRNVKGNVIGFGGRVL-DGGEPKY 237
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K +ELYGLFEA+ AI + GYVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 238 LNSPETPLFSKGSELYGLFEARLAIRELGYVLVVEGYMDVVALAQLGFANAVATLGTACT 297
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+ T++++FSFDGD AGRRAARRALE L +A D++ +KFLFLP ++DPDSY+
Sbjct: 298 PVHVQKLFRQTDTVVFSFDGDSAGRRAARRALEAALPHAADNRTVKFLFLPKEHDPDSYV 357
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG F ++V AM L QF L E++ + L+ + K+ ++ + L + +P +++LR
Sbjct: 358 REFGTDGFGEQVDRAMPLSQFLLNEVLNDKELEQPEGRAKALFDAKPLLQALP-ANALRV 416
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTI-----EKKNIQPICIEYQIMKLLISYP 355
+I+ L+ + F EI L I++ + E++ + E + ++ L+ YP
Sbjct: 417 QILHMLADRLDTPFTEIAALCDIDSRAAAVARANVPKSERRRV--TGQEQRALRNLVMYP 474
Query: 356 SLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSK 398
+ ++ Q+ + + + +F I H++
Sbjct: 475 GIAGSLD-----------QDSERTLVTMTEHGELFSEVIGHAR 506
>gi|418530412|ref|ZP_13096335.1| DNA primase [Comamonas testosteroni ATCC 11996]
gi|371452131|gb|EHN65160.1| DNA primase [Comamonas testosteroni ATCC 11996]
Length = 661
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 145/332 (43%), Positives = 216/332 (65%), Gaps = 16/332 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A + Y+ QLK + +AI +LKKRG++ E+ RF LGYAP W+ L VF +Y+N L
Sbjct: 125 AGESYRKQLKAAPKAIEYLKKRGVSGEVSKRFGLGYAPAGWHGLASVFAEYDNPQ-LEEC 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+ V + + +RYDRFR R+MFPI+N G+ IGFGGR+ D + KY+NS
Sbjct: 184 GLVI------VGE----DDSRRYDRFRDRLMFPIRNVKGECIGFGGRVFGD-EKPKYLNS 232
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGL+EA+ A+ GY L+TEGYMDV+ L+Q GF VA LGTACT H
Sbjct: 233 PETPVFHKGRELYGLYEARQALRDMGYALVTEGYMDVVALAQLGFANAVATLGTACTPEH 292
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+ +T++++FSFDGD AGRRAAR+AL+ L ATD + IKFLFLP ++DPDS+IR+F
Sbjct: 293 VQKLFRFTDAVVFSFDGDGAGRRAARKALDAALPLATDTRSIKFLFLPSEHDPDSFIREF 352
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + FS+ V +A L +F +E +L + N L+ ++P +L+ +++
Sbjct: 353 GPEAFSRYVGDATPLSRFLIESASEGCDLGQTEGRAHMASNARPLWSLLP-DGALKRQLL 411
Query: 304 SSLSKIIKVSFNEINNLF---KINTSSIKHKT 332
S ++ + ++ ++++++ T+ I +T
Sbjct: 412 SEIAALAQLDSRDLSDIWAQEAARTAPIARRT 443
>gi|395009045|ref|ZP_10392618.1| DNA primase, catalytic core [Acidovorax sp. CF316]
gi|394312911|gb|EJE50014.1| DNA primase, catalytic core [Acidovorax sp. CF316]
Length = 698
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 208/318 (65%), Gaps = 12/318 (3%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A D Y+ QL+ S+ AI + K RG++ + R+ LGYAP W +L VF Y++ L S
Sbjct: 131 AGDAYRRQLRESQRAIAYFKGRGVSGAVAKRYGLGYAPEGWRSLASVFPHYDD-PLLEES 189
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I+ + Q KRYDRFR R+MFPI+N G+ IGFGGR++ D ++ KY+NS
Sbjct: 190 GLV---IVGEDGQD------KRYDRFRDRVMFPIRNVKGECIGFGGRVLGD-DKPKYLNS 239
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGLFEA+ I + GY L+TEGYMDV+ L+Q GF VA LGTACT H
Sbjct: 240 PETPVFHKGRELYGLFEARTPIREHGYALVTEGYMDVVALAQLGFPNAVATLGTACTPEH 299
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+L +T +++FSFDGD AGRRAAR+AL+ L +ATD + IKFLFLP ++DPDS+IR
Sbjct: 300 VQKLLRFTEAVVFSFDGDNAGRRAARKALDGALPHATDTRSIKFLFLPAEHDPDSFIRAH 359
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F++ V EA+ L +F +E +L T + N L+ +P L+ +++
Sbjct: 360 GTDAFARHVSEAVPLSRFLVESASDGCDLTTAEGRAHMASNARPLWTALP-DGVLKRQLL 418
Query: 304 SSLSKIIKVSFNEINNLF 321
L+++ +++ +++ L+
Sbjct: 419 GELAELTQLNARDLSELW 436
>gi|91788956|ref|YP_549908.1| DNA primase [Polaromonas sp. JS666]
gi|91698181|gb|ABE45010.1| DNA primase [Polaromonas sp. JS666]
Length = 660
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 208/319 (65%), Gaps = 6/319 (1%)
Query: 11 QLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLVVDKI 70
L+ S+ AI + K RGL+ EI F LGYAP W +L VF DYN+ L SGLV I
Sbjct: 132 HLRGSERAIEYFKGRGLSGEIARTFGLGYAPEGWRSLASVFPDYND-PLLVESGLV---I 187
Query: 71 INKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFH 130
+ + + KRYDRFR R+MFPI+N G+ IGFGGR++ D + KY+NSPETP+F
Sbjct: 188 TGEAGEENAGGEAKRYDRFRDRVMFPIRNVKGECIGFGGRVLGD-EKPKYLNSPETPVFS 246
Query: 131 KSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFY 190
K ELYGLFEA+ A+ + GY L+TEGYMDV+ L+Q GF VA LGTACT+ H++K+ +
Sbjct: 247 KGRELYGLFEARTALREHGYALVTEGYMDVVALAQLGFANAVATLGTACTADHVQKLFRF 306
Query: 191 TNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSK 250
T+S++FSFDGD AGRRAAR+AL+ L +ATD + +KFLFLP ++DPDSYIR+ G + F+
Sbjct: 307 TDSVVFSFDGDGAGRRAARKALDAALPFATDVRTVKFLFLPSEHDPDSYIREHGKEGFAA 366
Query: 251 KVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIISSLSKII 310
V +A+ L +F LE +L T + N L+ ++P +L+ ++++ ++ +
Sbjct: 367 YVSKAVPLSRFLLEAAAEGCDLDTAEGRAHMASNARPLWSLLP-DGALKRQLLAEIADQV 425
Query: 311 KVSFNEINNLFKINTSSIK 329
+ E+ L++ ++ K
Sbjct: 426 MIDSRELLQLWQPASAGYK 444
>gi|330821205|ref|YP_004350067.1| DNA primase [Burkholderia gladioli BSR3]
gi|327373200|gb|AEA64555.1| DNA primase [Burkholderia gladioli BSR3]
Length = 626
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 169/414 (40%), Positives = 251/414 (60%), Gaps = 20/414 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M ASD+Y+ QL+ + AI +LKKRGL EI +RF LGYAP W L F DY +TL
Sbjct: 130 MQTASDYYRKQLRGATNAIQYLKKRGLTGEIAMRFGLGYAPEGWQNLETAFEDYR-ADTL 188
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + +RYDRFR RIMFPI+N G +IGFGGR++ DS E KY
Sbjct: 189 VDAGLVI--VSEKTDAQGTA---RRYDRFRERIMFPIRNVKGNVIGFGGRVL-DSGEPKY 242
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI Y L+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 243 LNSPETPLFNKGSELYGLFEARLAIRDQKYALVVEGYMDVVALAQLGFPNAVATLGTACT 302
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T++++FSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 303 PIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNRTIRFLFLPTEHDPDSYV 362
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + FS +V AM L QF L E I L + K+ + + L + +P +++LR
Sbjct: 363 REFGAEAFSDQVRRAMPLSQFLLNEAIAGKELDQPEGRAKALFEAKPLLQALP-ANALRA 421
Query: 301 KIISSLSKIIKVSFNEINNLFKINT-----SSIKHKTIEKKNIQPICIEYQIMKLLISYP 355
+I+ + + + F E+ L ++ + +++ + E + ++ L+ YP
Sbjct: 422 QIMHMFADRLNIPFEEVAGLSDVDARIAAPARQAPARADRRRV--TDHEKRTLRNLVMYP 479
Query: 356 SLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKN 409
++ ++ +D+ +N +L D + ++ ++ + L + +N
Sbjct: 480 RIVALLDEDDVATLRGLPRNG-----ELFDEVLAISRELGNAAEFRLLSDVLRN 528
>gi|121604511|ref|YP_981840.1| DNA primase [Polaromonas naphthalenivorans CJ2]
gi|120593480|gb|ABM36919.1| DNA primase [Polaromonas naphthalenivorans CJ2]
Length = 676
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 148/337 (43%), Positives = 214/337 (63%), Gaps = 8/337 (2%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A Y L+ S+ AI + K+RG++ EI F LGYAP W +L VF DYNN L S
Sbjct: 125 AGRAYIRSLRTSERAIQYFKRRGVSGEIAKTFGLGYAPEGWRSLASVFPDYNN-PLLVES 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I + + + KRYDRFR R+MFPI+N G+ IGFGGR++ D + KY+NS
Sbjct: 184 GLV---ITGEPGEDNAAGEAKRYDRFRDRVMFPIRNVKGECIGFGGRVLGD-EKPKYLNS 239
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+F K ELYGLFEA+ A+ + GY L+TEGYMDV+ L+Q GF VA LGTACT+ H
Sbjct: 240 PETPVFSKGRELYGLFEARTALREHGYALVTEGYMDVVALAQLGFANAVATLGTACTAEH 299
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+ +T S++FSFDGD AGRRAAR+AL+ L +A+D + +KFLFLP ++DPDS+IR+
Sbjct: 300 VQKLFRFTESVVFSFDGDSAGRRAARKALDAALPFASDVRTVKFLFLPAEHDPDSFIREH 359
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F+ V +A+ L +F +E +L T + N L+ +P +L+ +++
Sbjct: 360 GQEGFAACVAKAVPLSRFLIEAAAEGCDLDTAEGRAHMASNARPLWSALP-EGALKPQLL 418
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQP 340
+ +++ + + E+ L++ +S K KKN P
Sbjct: 419 AEIAEQVMIDSRELLQLWQ--PASGGRKPYYKKNSGP 453
>gi|421746042|ref|ZP_16183865.1| DNA primase, partial [Cupriavidus necator HPC(L)]
gi|409775436|gb|EKN56921.1| DNA primase, partial [Cupriavidus necator HPC(L)]
Length = 443
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 154/330 (46%), Positives = 219/330 (66%), Gaps = 10/330 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M AS+FY+ QL+ + AI +LK RGL EI +F LGYAP++W L VF Y +
Sbjct: 120 MTRASEFYRRQLRGAPGAIQYLKGRGLTGEIAAQFGLGYAPDDWQGLESVFGSYRDDAIA 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +GL+++ + P +RYDRFR RIMFPI+NT GQ+IGFGGR++ E
Sbjct: 180 GPLIEAGLLIESEKRDADGKP-----RRYDRFRDRIMFPIRNTKGQVIGFGGRVM-GQGE 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA++AI ++GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 234 PKYLNSPETPLFSKGTELYGLFEARHAIRETGYVLVVEGYMDVVALAQLGFANAVATLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
ACT H++K+L T++++FSFDGD AGRRAARRALE CL Y D+K I+FLFLP ++DPD
Sbjct: 294 ACTPVHVQKLLRQTDAVVFSFDGDAAGRRAARRALEACLPYVADNKTIRFLFLPAEHDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SY+R+ G + F+ +V +AM L +F L+ + +L+ + +++Y + L K +P +
Sbjct: 354 SYVREEGTEAFAAQVRDAMPLSRFLLQCVTEEQDLRQPEGRARAQYEAKPLLKAMP-AGG 412
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSS 327
LR +I+ L++ + EI + + + +
Sbjct: 413 LRLQIVRELAEATGTTPAEIEAVCGLGSDA 442
>gi|413965118|ref|ZP_11404344.1| DNA primase [Burkholderia sp. SJ98]
gi|413927792|gb|EKS67081.1| DNA primase [Burkholderia sp. SJ98]
Length = 625
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 165/403 (40%), Positives = 245/403 (60%), Gaps = 26/403 (6%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A DFY+ QL+ + AI +LKKRGL E+ RF LGYAP+ W L F DY + N +
Sbjct: 123 MQTACDFYRKQLRGAPNAIEYLKKRGLTGEVAARFGLGYAPDGWQNLEAAFPDYRDENLV 182
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
S ++V + + Q+ +RYDRFR R+MFPI+N G +IGFGGR++ D E KY
Sbjct: 183 ESGLVIVSEKTDSQGQA------RRYDRFRERVMFPIRNVKGNVIGFGGRVL-DGGEPKY 235
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K +ELYGLFEA+ AI + GYVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 236 LNSPETPLFSKGSELYGLFEARLAIRELGYVLVVEGYMDVVALAQLGFANAVATLGTACT 295
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+ T++++FSFDGD AGRRAARRALE L +A D++ IKFLFLP ++DPDSY+
Sbjct: 296 PIHVQKLFRQTDTVVFSFDGDSAGRRAARRALEAALPHAADNRTIKFLFLPKEHDPDSYV 355
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG F ++V AM L QF L E++ + L+ + K+ ++ + L + +P +++LR
Sbjct: 356 REFGTDGFGEQVDRAMPLSQFLLNEVLNDKELEQPEGRAKALFDAKPLLQALP-ANALRV 414
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTI-----EKKNIQPICIEYQIMKLLISYP 355
+I+ L+ + F EI L I++ + E++ + E + ++ L+ YP
Sbjct: 415 QILHMLADRLDTPFTEIAALCDIDSRAAAVARANVPKSERRRV--TGQEQRALRNLVMYP 472
Query: 356 SLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSK 398
+ ++ Q+ + + + +F I H++
Sbjct: 473 GIAVSLD-----------QDSERTLVTMTEHGELFSEVISHAR 504
>gi|167842196|ref|ZP_02468880.1| DNA primase [Burkholderia thailandensis MSMB43]
gi|424905499|ref|ZP_18329002.1| DNA primase [Burkholderia thailandensis MSMB43]
gi|390928392|gb|EIP85796.1| DNA primase [Burkholderia thailandensis MSMB43]
Length = 625
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 157/325 (48%), Positives = 223/325 (68%), Gaps = 8/325 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK+RGL EI LRF LGYAP+ W L F DY + ++L
Sbjct: 129 MQTACDYYRKQLRGAPNAIQYLKRRGLTGEIALRFGLGYAPDGWQNLESAFGDYRH-DSL 187
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + + V +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 188 VDAGLVI--VSEKTDANGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 241
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + Y L+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 242 LNSPETPLFNKGSELYGLFEARLAIREHKYALVVEGYMDVVALAQLGFPNAVATLGTACT 301
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T++++FSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 302 PIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 361
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E L + K+ ++ + L + +P +++LR
Sbjct: 362 REFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALFDAKPLLQALP-ANALRA 420
Query: 301 KIISSLSKIIKVSFNEINNLFKINT 325
+I+ + +++ F+E+ L +++
Sbjct: 421 QIMHMFADRLQIPFDEVAALAEVDA 445
>gi|418397008|ref|ZP_12970758.1| DNA primase [Burkholderia pseudomallei 354a]
gi|418556605|ref|ZP_13121229.1| DNA primase [Burkholderia pseudomallei 354e]
gi|385366770|gb|EIF72372.1| DNA primase [Burkholderia pseudomallei 354e]
gi|385369572|gb|EIF74887.1| DNA primase [Burkholderia pseudomallei 354a]
Length = 624
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 157/325 (48%), Positives = 223/325 (68%), Gaps = 8/325 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK+RGL EI LRF LGYAP+ W L F DY + ++L
Sbjct: 128 MQTACDYYRKQLRGAPNAIQYLKRRGLTGEIALRFGLGYAPDGWQNLEAAFDDYRH-DSL 186
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + + V +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 187 VGAGLVI--VSEKTDANGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 240
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + Y L+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 241 LNSPETPLFNKGSELYGLFEARLAIREHKYALVVEGYMDVVALAQLGFPNAVATLGTACT 300
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T++++FSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 301 PIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 360
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E L + K+ ++ + L + +P +++LR
Sbjct: 361 REFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALFDAKPLLQALP-ANALRA 419
Query: 301 KIISSLSKIIKVSFNEINNLFKINT 325
+I+ + +++ F+E+ L +++
Sbjct: 420 QIMHMFADRLQIPFDEVTALAEVDA 444
>gi|167743534|ref|ZP_02416308.1| DNA primase [Burkholderia pseudomallei 14]
gi|254186159|ref|ZP_04892677.1| DNA primase [Burkholderia pseudomallei Pasteur 52237]
gi|157933845|gb|EDO89515.1| DNA primase [Burkholderia pseudomallei Pasteur 52237]
Length = 624
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 157/325 (48%), Positives = 223/325 (68%), Gaps = 8/325 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK+RGL EI LRF LGYAP+ W L F DY + ++L
Sbjct: 128 MQTACDYYRKQLRGAPNAIQYLKRRGLTGEIALRFGLGYAPDGWQNLEAAFDDYRH-DSL 186
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + + V +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 187 VGAGLVI--VSEKTDANGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 240
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + Y L+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 241 LNSPETPLFNKGSELYGLFEARLAIREHKYALVVEGYMDVVALAQLGFPNAVATLGTACT 300
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T++++FSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 301 PIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 360
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E L + K+ ++ + L + +P +++LR
Sbjct: 361 REFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALFDAKPLLQALP-ANALRA 419
Query: 301 KIISSLSKIIKVSFNEINNLFKINT 325
+I+ + +++ F+E+ L +++
Sbjct: 420 QIMHMFADRLQIPFDEVAALAEVDA 444
>gi|76819088|ref|YP_335992.1| DNA primase [Burkholderia pseudomallei 1710b]
gi|167899152|ref|ZP_02486553.1| DNA primase [Burkholderia pseudomallei 7894]
gi|167915834|ref|ZP_02502925.1| DNA primase [Burkholderia pseudomallei 112]
gi|167923673|ref|ZP_02510764.1| DNA primase [Burkholderia pseudomallei BCC215]
gi|217422647|ref|ZP_03454150.1| DNA primase [Burkholderia pseudomallei 576]
gi|254194020|ref|ZP_04900452.1| DNA primase [Burkholderia pseudomallei S13]
gi|254263841|ref|ZP_04954706.1| DNA primase [Burkholderia pseudomallei 1710a]
gi|254301212|ref|ZP_04968656.1| DNA primase [Burkholderia pseudomallei 406e]
gi|386865565|ref|YP_006278513.1| DNA primase [Burkholderia pseudomallei 1026b]
gi|418536786|ref|ZP_13102455.1| DNA primase [Burkholderia pseudomallei 1026a]
gi|76583561|gb|ABA53035.1| DNA primase [Burkholderia pseudomallei 1710b]
gi|157811303|gb|EDO88473.1| DNA primase [Burkholderia pseudomallei 406e]
gi|169650771|gb|EDS83464.1| DNA primase [Burkholderia pseudomallei S13]
gi|217394878|gb|EEC34897.1| DNA primase [Burkholderia pseudomallei 576]
gi|254214843|gb|EET04228.1| DNA primase [Burkholderia pseudomallei 1710a]
gi|385351678|gb|EIF58144.1| DNA primase [Burkholderia pseudomallei 1026a]
gi|385662693|gb|AFI70115.1| DNA primase [Burkholderia pseudomallei 1026b]
Length = 624
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 157/325 (48%), Positives = 223/325 (68%), Gaps = 8/325 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK+RGL EI LRF LGYAP+ W L F DY + ++L
Sbjct: 128 MQTACDYYRKQLRGAPNAIQYLKRRGLTGEIALRFGLGYAPDGWQNLEAAFDDYRH-DSL 186
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + + V +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 187 VDAGLVI--VSEKTDANGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 240
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + Y L+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 241 LNSPETPLFNKGSELYGLFEARLAIREHKYALVVEGYMDVVALAQLGFPNAVATLGTACT 300
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T++++FSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 301 PIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 360
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E L + K+ ++ + L + +P +++LR
Sbjct: 361 REFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALFDAKPLLQALP-ANALRA 419
Query: 301 KIISSLSKIIKVSFNEINNLFKINT 325
+I+ + +++ F+E+ L +++
Sbjct: 420 QIMHMFADRLQIPFDEVTALAEVDA 444
>gi|83717428|ref|YP_438820.1| DNA primase [Burkholderia thailandensis E264]
gi|167615341|ref|ZP_02383976.1| DNA primase [Burkholderia thailandensis Bt4]
gi|257141904|ref|ZP_05590166.1| DNA primase [Burkholderia thailandensis E264]
gi|83651253|gb|ABC35317.1| DNA primase [Burkholderia thailandensis E264]
Length = 625
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 156/325 (48%), Positives = 220/325 (67%), Gaps = 8/325 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK+RGL EI LRF LGYAP+ W L F DY + ++L
Sbjct: 129 MQTACDYYRKQLRGAPNAIQYLKRRGLTGEIALRFGLGYAPDGWQNLEAAFDDYRH-DSL 187
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ N + +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 188 VDAGLVIVSDKTDANGA-----ARRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 241
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + Y L+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 242 LNSPETPLFNKGSELYGLFEARLAIREHKYALVVEGYMDVVALAQLGFPNAVATLGTACT 301
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T++++FSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 302 PVHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 361
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E L + K+ ++ + L + +P +++LR
Sbjct: 362 REFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALFDAKPLLQALP-ANALRA 420
Query: 301 KIISSLSKIIKVSFNEINNLFKINT 325
+I+ + +++ F+E+ L +++
Sbjct: 421 QIMHMFADRLRIPFDEVAALAEVDA 445
>gi|299533870|ref|ZP_07047237.1| DNA primase [Comamonas testosteroni S44]
gi|298718154|gb|EFI59144.1| DNA primase [Comamonas testosteroni S44]
Length = 688
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 211/318 (66%), Gaps = 13/318 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A + Y+ QLK + +AI +LKKRG++ E+ RF LGYAP W+ L VF +Y+N L
Sbjct: 152 AGESYRKQLKAAPKAIEYLKKRGVSGEVSKRFGLGYAPAGWHGLASVFAEYDNPQ-LEEC 210
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+ V + + +RYDRFR R+MFPI+N G+ IGFGGR+ D + KY+NS
Sbjct: 211 GLVI------VGE----DDSRRYDRFRDRLMFPIRNVKGECIGFGGRVFGD-EKPKYLNS 259
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGL+EA+ A+ GY L+TEGYMDV+ L+Q GF VA LGTACT H
Sbjct: 260 PETPVFHKGRELYGLYEARQALRDMGYALVTEGYMDVVALAQLGFANAVATLGTACTPEH 319
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+ +T++++FSFDGD AGRRAAR+AL+ L ATD + IKFLFLP ++DPDS+IR+F
Sbjct: 320 VQKLFRFTDAVVFSFDGDGAGRRAARKALDAALPLATDTRSIKFLFLPSEHDPDSFIREF 379
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + FS+ V +A L +F +E +L + N L+ ++P +L+ +++
Sbjct: 380 GPEAFSRYVGDATPLSRFLIESASEGCDLGQTEGRAHMASNARPLWSLLP-DGALKRQLL 438
Query: 304 SSLSKIIKVSFNEINNLF 321
S ++ + ++ ++++++
Sbjct: 439 SEIAALAQLDSRDLSDIW 456
>gi|53716430|ref|YP_105145.1| DNA primase [Burkholderia mallei ATCC 23344]
gi|67643220|ref|ZP_00441968.1| DNA primase [Burkholderia mallei GB8 horse 4]
gi|121596975|ref|YP_991114.1| DNA primase [Burkholderia mallei SAVP1]
gi|126443568|ref|YP_001063519.1| DNA primase [Burkholderia pseudomallei 668]
gi|126456458|ref|YP_001076417.1| DNA primase [Burkholderia pseudomallei 1106a]
gi|134278097|ref|ZP_01764811.1| DNA primase [Burkholderia pseudomallei 305]
gi|167000272|ref|ZP_02266091.1| DNA primase [Burkholderia mallei PRL-20]
gi|167829082|ref|ZP_02460553.1| DNA primase [Burkholderia pseudomallei 9]
gi|167850559|ref|ZP_02476067.1| DNA primase [Burkholderia pseudomallei B7210]
gi|167907495|ref|ZP_02494700.1| DNA primase [Burkholderia pseudomallei NCTC 13177]
gi|226195730|ref|ZP_03791317.1| DNA primase [Burkholderia pseudomallei Pakistan 9]
gi|237510220|ref|ZP_04522935.1| DNA primase [Burkholderia pseudomallei MSHR346]
gi|242312000|ref|ZP_04811017.1| DNA primase [Burkholderia pseudomallei 1106b]
gi|254177320|ref|ZP_04883976.1| DNA primase [Burkholderia mallei ATCC 10399]
gi|254184930|ref|ZP_04891519.1| DNA primase [Burkholderia pseudomallei 1655]
gi|254203083|ref|ZP_04909445.1| DNA primase [Burkholderia mallei FMH]
gi|254208416|ref|ZP_04914765.1| DNA primase [Burkholderia mallei JHU]
gi|403523632|ref|YP_006659201.1| DNA primase [Burkholderia pseudomallei BPC006]
gi|418544097|ref|ZP_13109409.1| DNA primase [Burkholderia pseudomallei 1258a]
gi|418550938|ref|ZP_13115885.1| DNA primase [Burkholderia pseudomallei 1258b]
gi|52422400|gb|AAU45970.1| DNA primase [Burkholderia mallei ATCC 23344]
gi|121224773|gb|ABM48304.1| DNA primase [Burkholderia mallei SAVP1]
gi|126223059|gb|ABN86564.1| DNA primase [Burkholderia pseudomallei 668]
gi|126230226|gb|ABN93639.1| DNA primase [Burkholderia pseudomallei 1106a]
gi|134249881|gb|EBA49961.1| DNA primase [Burkholderia pseudomallei 305]
gi|147746128|gb|EDK53206.1| DNA primase [Burkholderia mallei FMH]
gi|147751103|gb|EDK58171.1| DNA primase [Burkholderia mallei JHU]
gi|160698360|gb|EDP88330.1| DNA primase [Burkholderia mallei ATCC 10399]
gi|184215522|gb|EDU12503.1| DNA primase [Burkholderia pseudomallei 1655]
gi|225932215|gb|EEH28215.1| DNA primase [Burkholderia pseudomallei Pakistan 9]
gi|235002425|gb|EEP51849.1| DNA primase [Burkholderia pseudomallei MSHR346]
gi|238524505|gb|EEP87938.1| DNA primase [Burkholderia mallei GB8 horse 4]
gi|242135239|gb|EES21642.1| DNA primase [Burkholderia pseudomallei 1106b]
gi|243063760|gb|EES45946.1| DNA primase [Burkholderia mallei PRL-20]
gi|385350369|gb|EIF56913.1| DNA primase [Burkholderia pseudomallei 1258b]
gi|385350766|gb|EIF57288.1| DNA primase [Burkholderia pseudomallei 1258a]
gi|403078699|gb|AFR20278.1| DNA primase [Burkholderia pseudomallei BPC006]
Length = 624
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 157/325 (48%), Positives = 223/325 (68%), Gaps = 8/325 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK+RGL EI LRF LGYAP+ W L F DY + ++L
Sbjct: 128 MQTACDYYRKQLRGAPNAIQYLKRRGLTGEIALRFGLGYAPDGWQNLEAAFDDYRH-DSL 186
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + + V +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 187 VDAGLVI--VSEKTDANGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 240
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + Y L+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 241 LNSPETPLFNKGSELYGLFEARLAIREHKYALVVEGYMDVVALAQLGFPNAVATLGTACT 300
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T++++FSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 301 PIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 360
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E L + K+ ++ + L + +P +++LR
Sbjct: 361 REFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALFDAKPLLQALP-ANALRA 419
Query: 301 KIISSLSKIIKVSFNEINNLFKINT 325
+I+ + +++ F+E+ L +++
Sbjct: 420 QIMHMFADRLQIPFDEVAALAEVDA 444
>gi|53722777|ref|YP_111762.1| DNA primase [Burkholderia pseudomallei K96243]
gi|167820723|ref|ZP_02452403.1| DNA primase [Burkholderia pseudomallei 91]
gi|52213191|emb|CAH39231.1| DNA primase [Burkholderia pseudomallei K96243]
Length = 624
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 157/325 (48%), Positives = 223/325 (68%), Gaps = 8/325 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK+RGL EI LRF LGYAP+ W L F DY + ++L
Sbjct: 128 MQTACDYYRKQLRGAPNAIQYLKRRGLTGEIALRFGLGYAPDGWQNLEAAFDDYRH-DSL 186
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + + V +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 187 VDAGLVI--VSEKTDANGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 240
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + Y L+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 241 LNSPETPLFNKGSELYGLFEARLAIREHKYALVVEGYMDVVALAQLGFPNAVATLGTACT 300
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T++++FSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 301 PIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 360
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E L + K+ ++ + L + +P +++LR
Sbjct: 361 REFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALFDAKPLLQALP-ANALRA 419
Query: 301 KIISSLSKIIKVSFNEINNLFKINT 325
+I+ + +++ F+E+ L +++
Sbjct: 420 QIMHMFADRLQIPFDEVAALAEVDA 444
>gi|124382161|ref|YP_001025511.1| DNA primase [Burkholderia mallei NCTC 10229]
gi|126446300|ref|YP_001077576.1| DNA primase [Burkholderia mallei NCTC 10247]
gi|254359398|ref|ZP_04975670.1| DNA primase [Burkholderia mallei 2002721280]
gi|126239154|gb|ABO02266.1| DNA primase [Burkholderia mallei NCTC 10247]
gi|148028585|gb|EDK86545.1| DNA primase [Burkholderia mallei 2002721280]
gi|261826679|gb|ABM99705.2| DNA primase [Burkholderia mallei NCTC 10229]
Length = 624
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 157/325 (48%), Positives = 223/325 (68%), Gaps = 8/325 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK+RGL EI LRF LGYAP+ W L F DY + ++L
Sbjct: 128 MQTACDYYRKQLRGAPNAIQYLKRRGLTGEIALRFGLGYAPDGWQNLEAAFDDYRH-DSL 186
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + + V +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 187 VDAGLVI--VSEKTDANGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 240
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + Y L+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 241 LNSPETPLFNKGSELYGLFEARLAIREHKYALVVEGYMDVVALAQLGFPNAVATLGTACT 300
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T++++FSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 301 PIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 360
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E L + K+ ++ + L + +P +++LR
Sbjct: 361 REFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALFDAKPLLQALP-ANALRA 419
Query: 301 KIISSLSKIIKVSFNEINNLFKINT 325
+I+ + +++ F+E+ L +++
Sbjct: 420 QIMHMFADRLQIPFDEVAALAEVDA 444
>gi|167577171|ref|ZP_02370045.1| DNA primase [Burkholderia thailandensis TXDOH]
Length = 625
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 156/325 (48%), Positives = 220/325 (67%), Gaps = 8/325 (2%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK+RGL EI LRF LGYAP+ W L F DY + ++L
Sbjct: 129 MQTACDYYRKQLRGAPNAIQYLKRRGLTGEIALRFGLGYAPDGWQNLEAAFDDYRH-DSL 187
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ N + +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 188 VDAGLVIVSEKTDANGA-----ARRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 241
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + Y L+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 242 LNSPETPLFNKGSELYGLFEARLAIREHKYALVVEGYMDVVALAQLGFPNAVATLGTACT 301
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T++++FSFDGD AGRRAARRALE CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 302 PVHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNRTIRFLFLPPEHDPDSYV 361
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG FS++V AM L QF L E L + K+ ++ + L + +P +++LR
Sbjct: 362 REFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALFDAKPLLQALP-ANALRA 420
Query: 301 KIISSLSKIIKVSFNEINNLFKINT 325
+I+ + +++ F+E+ L +++
Sbjct: 421 QIMHMFADRLQIPFDEVAALAEVDA 445
>gi|350545713|ref|ZP_08915173.1| DNA primase [Candidatus Burkholderia kirkii UZHbot1]
gi|350526503|emb|CCD40297.1| DNA primase [Candidatus Burkholderia kirkii UZHbot1]
Length = 590
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 167/389 (42%), Positives = 245/389 (62%), Gaps = 16/389 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A DFY+ QL+ + AI +LKKRGL EI RF LGYAP+ W L F DY + L
Sbjct: 93 MQVAWDFYRKQLRGAPNAIAYLKKRGLTGEIAARFGLGYAPDGWQNLEAAFPDYRD-EKL 151
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + + +RYDRFR R+MFPI+N G +IGFGGR++ D E KY
Sbjct: 152 VETGLVI--VSEKTDSQGQV---RRYDRFRERVMFPIRNVKGNVIGFGGRVL-DGGEPKY 205
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K +ELYGLFEA+ AI + GYVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 206 LNSPETPLFSKGSELYGLFEARLAIRELGYVLVVEGYMDVVALAQLGFANAVATLGTACT 265
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+++K+ T++++FSFDGD AGRRAARRALE L +A D + IKFLFLP +YDPDSY+
Sbjct: 266 PIYVQKLFRQTDTVVFSFDGDSAGRRAARRALEAALPHAADSRTIKFLFLPKEYDPDSYV 325
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG F ++V AM L QF L E++ + L+ + K+ ++ + L + +P +++LR
Sbjct: 326 REFGTDGFGEQVDRAMPLSQFLLNEVLNDKELEQPEGRAKALFDAKPLLQALP-ANALRV 384
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTI-----EKKNIQPICIEYQIMKLLISYP 355
+I+ L+ + F EI L I++ + E++ + I E + ++ L+ YP
Sbjct: 385 QILHMLADRLDTPFTEIAALCDIDSRAAAVARASVPKSERRRV--IGQEQRALRNLVMYP 442
Query: 356 SLINEINSEDMIIFSKCSQNYVKMFFQLI 384
+ ++ E + ++ + ++F ++I
Sbjct: 443 GIAGSLDQESERTLATMTE-HGELFSEVI 470
>gi|264677332|ref|YP_003277238.1| DNA primase [Comamonas testosteroni CNB-2]
gi|262207844|gb|ACY31942.1| DNA primase [Comamonas testosteroni CNB-2]
Length = 688
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 141/318 (44%), Positives = 211/318 (66%), Gaps = 13/318 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A + Y+ QLK + +AI +LKKRG++ E+ RF LGYAP W+ L VF +Y+N L
Sbjct: 152 AGESYRKQLKAAPKAIEYLKKRGVSGEVSKRFGLGYAPAGWHGLASVFAEYDNPQ-LEEC 210
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+ V + + +RYDRFR R+MFPI+N G+ IGFGGR+ D + KY+NS
Sbjct: 211 GLVI------VGE----DDSRRYDRFRDRLMFPIRNVKGEYIGFGGRVFGD-EKPKYLNS 259
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGL+EA+ A+ GY L+TEGYMDV+ L+Q GF +A LGTACT H
Sbjct: 260 PETPVFHKGRELYGLYEARQALRDMGYALVTEGYMDVVALAQLGFANALATLGTACTPEH 319
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+ +T++++FSFDGD AGRRAAR+AL+ L ATD + IKFLFLP ++DPDS+IR+F
Sbjct: 320 VQKLFRFTDAVVFSFDGDGAGRRAARKALDAALPLATDTRSIKFLFLPSEHDPDSFIREF 379
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + FS+ V +A L +F +E +L + N L+ ++P +L+ +++
Sbjct: 380 GPEAFSRYVGDATPLSRFLIESASEGCDLGQTEGRAHMASNARPLWSLLP-DGALKRQLL 438
Query: 304 SSLSKIIKVSFNEINNLF 321
S ++ + ++ ++++++
Sbjct: 439 SEIAALAQLDSRDLSDIW 456
>gi|209517799|ref|ZP_03266634.1| DNA primase [Burkholderia sp. H160]
gi|209501745|gb|EEA01766.1| DNA primase [Burkholderia sp. H160]
Length = 623
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 172/438 (39%), Positives = 274/438 (62%), Gaps = 34/438 (7%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LKKRGL EI RF LGYAP+ W L F DY + + L
Sbjct: 127 MQTACDYYRKQLRGAPGAIQYLKKRGLTGEIAARFGLGYAPDGWQNLEAAFPDYRD-DAL 185
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV I+++ +S + +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 186 VEAGLV---IVSE--KSDAQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 239
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 240 LNSPETPLFNKGSELYGLFEARLAIREQHYVLVVEGYMDVVALAQLGFQNAVATLGTACT 299
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K++ T+++IFSFDGD AGRRAARRAL+ CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 300 PIHVQKLMRQTDTVIFSFDGDAAGRRAARRALDACLPHAADNRTIRFLFLPTEHDPDSYV 359
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + F+++V AM L QF L E++ L + ++ ++ + L + +P +++LR
Sbjct: 360 REFGTEAFAEQVERAMPLSQFMLNEVLTGKELDQPEGKARALFDAKPLLQALP-ANALRA 418
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTI-----EKKNIQPICIEYQIMKLLISYP 355
+I+ + + V F+E+ L +++ +++++ IE + ++ L+ YP
Sbjct: 419 QIMHMFADRLDVPFSEVAALCEVDARIAAAAREAPARKDRRSV--TGIEEKTLRNLVMYP 476
Query: 356 ---SLINEINSEDMIIFSKCSQNYVKM-----------FFQLIDTIHIFKNDIDHSKFIK 401
++++E E ++ ++ ++ + ++ FQL+ + +N + F +
Sbjct: 477 RTVAMLDEEAEEALLTVTRHAELFAEVATHARALGDSAAFQLLSD--LLRNGANAPTFEE 534
Query: 402 YLKKI---NKNFESIIVK 416
+KI ++N +++K
Sbjct: 535 IFRKILDYDENVRDLLLK 552
>gi|171059242|ref|YP_001791591.1| DNA primase [Leptothrix cholodnii SP-6]
gi|170776687|gb|ACB34826.1| DNA primase [Leptothrix cholodnii SP-6]
Length = 598
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 145/342 (42%), Positives = 220/342 (64%), Gaps = 16/342 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+ Y+ QLK S +AI++LK+RGL EI RF LGYAP + L F Y++ L S
Sbjct: 124 AAAHYRKQLKASPKAIDYLKRRGLTGEIAARFGLGYAPPGHHGLASAFARYDD-PLLVES 182
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I+++ + +R+DRFR RIMFPI+N G+IIGFGGR++ DS + KY+NS
Sbjct: 183 GLV---ILDEG------QDQRRHDRFRDRIMFPIRNVKGEIIGFGGRVLDDS-KPKYLNS 232
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+F K +ELYGL+EA+ AI + G+VL+TEGYMDV+ L+Q GF Q VA LGTACT+ H
Sbjct: 233 PETPVFVKGHELYGLYEARQAIRQRGHVLVTEGYMDVVALAQLGFDQAVATLGTACTADH 292
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K++ +T+ ++FSFDGD AGRRAA RA+E L +ATD + +FLFLP ++DPDSY+R
Sbjct: 293 VQKLVRHTDQVVFSFDGDNAGRRAAMRAMEAVLPFATDTRSFRFLFLPAEHDPDSYVRAE 352
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F +++ EA+ L L+ + +L T + + E L++ +P + LR +++
Sbjct: 353 GAEAFERRIAEALPLSSQMLQVAGADCDLVTPEGRARLVAQAEPLWRALP-AGVLRMQMV 411
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEY 345
+ +++ +++ ++ + ++ E QP Y
Sbjct: 412 NEFAQVAQLNAADLAARWGAGPPRAPAQSQE----QPYAPSY 449
>gi|295700834|ref|YP_003608727.1| DNA primase [Burkholderia sp. CCGE1002]
gi|295440047|gb|ADG19216.1| DNA primase [Burkholderia sp. CCGE1002]
Length = 624
Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 171/438 (39%), Positives = 272/438 (62%), Gaps = 34/438 (7%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LKKRGL EI RF LGYAP W L F +Y + + L
Sbjct: 128 MQTACDYYRKQLRGAPGAIQYLKKRGLTGEIAARFGLGYAPEGWQNLEAAFPNYRD-DAL 186
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV I+++ +S + +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 187 VEAGLV---IVSE--KSDAQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 240
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + YVL+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 241 LNSPETPLFNKGSELYGLFEARLAIREQHYVLVVEGYMDVVALAQLGFQNAVATLGTACT 300
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K++ T+++IFSFDGD AGRRAARRAL+ CL +A D++ I+FLFLP ++DPDSY+
Sbjct: 301 PIHVQKLMRQTDTVIFSFDGDAAGRRAARRALDACLPHAADNRTIRFLFLPSEHDPDSYV 360
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+FG + F+++V AM L QF L E++ L + ++ ++ + L + +P +++LR
Sbjct: 361 REFGTEAFAEQVERAMPLSQFMLNEVLTGKELDQPEGKARALFDAKPLLQALP-ANALRA 419
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTI-----EKKNIQPICIEYQIMKLLISYP 355
+I+ + + V F+E+ L +++ +++++ IE + ++ L+ YP
Sbjct: 420 QIMHMFADRLDVPFSEVAALCEVDARIAAAAREAPARKDRRSV--TGIEEKTLRNLVMYP 477
Query: 356 ---SLINEINSEDMIIFSKCSQNYVKM-----------FFQLIDTIHIFKNDIDHSKFIK 401
++++E E ++ ++ + + ++ FQL+ + +N + F +
Sbjct: 478 RTVAMLDEEAEEALLTVTRHGELFAEVTTHARALGDSAAFQLLSD--LLRNGANAPTFEE 535
Query: 402 YLKKI---NKNFESIIVK 416
+KI ++N +++K
Sbjct: 536 IFRKILDYDENVRDLLLK 553
>gi|302877608|ref|YP_003846172.1| DNA primase [Gallionella capsiferriformans ES-2]
gi|302580397|gb|ADL54408.1| DNA primase [Gallionella capsiferriformans ES-2]
Length = 585
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/360 (42%), Positives = 221/360 (61%), Gaps = 19/360 (5%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+ +Y+ QLK S AI++LK RGL+ EI RF +G+AP W L+ F DY + TL
Sbjct: 116 MQVATRYYREQLKLSTRAIDYLKNRGLSGEIAARFGIGFAPEGWQNLSAAFPDYQSA-TL 174
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + KRYDRFR R+MFPI N Q+IGFGGR++ D E KY
Sbjct: 175 VETGLVITG-----------DGDKRYDRFRDRVMFPIVNVRSQVIGFGGRVL-DKGEPKY 222
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K ELYGL++A+ AI G VL+ EGYMDV+ L+Q G VA LGTA T
Sbjct: 223 LNSPETPLFEKGRELYGLYQAQKAIRAHGRVLVVEGYMDVVALAQHGVDYAVATLGTATT 282
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
HI+K+L + I+F FDGD+AGR+AA RALE L + D K++ FLFLP ++DPDS+I
Sbjct: 283 PYHIQKLLRLADQIVFCFDGDKAGRKAAWRALENALPHLQDGKLLSFLFLPAEHDPDSFI 342
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKII--PLSSSL 298
R+FG F +++ EAM L + L E+ +L+T + + + + L +I P++S L
Sbjct: 343 REFGQAEFEQRIAEAMPLSGYLLRELTSELDLQTQEGRNQLLHRAKPLLSVIVSPVTSLL 402
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINT-SSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
K +++LS VS E+ L++I + +++K P ++ +++ LI+ P L
Sbjct: 403 LRKEVAALS---GVSQAELEALYEIKPIAHAPRPSLKKAARTPFPVQRLMLQCLIAQPGL 459
>gi|422321718|ref|ZP_16402763.1| DNA primase [Achromobacter xylosoxidans C54]
gi|317403352|gb|EFV83865.1| DNA primase [Achromobacter xylosoxidans C54]
Length = 687
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 142/319 (44%), Positives = 202/319 (63%), Gaps = 14/319 (4%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A Y QL+ S AI +LK+RGL EI F LG++ + + L++VF +Y + TL
Sbjct: 123 AAQAHYLKQLRASPAAIRYLKQRGLTGEIAAHFGLGWSGTDRHGLSQVFPNYED-PTLVE 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SGLV++ E+ +RYDRFR RIMFPI+N G +IGFGGR+I E KY+N
Sbjct: 182 SGLVIES-----------EEGRRYDRFRERIMFPIRNARGSLIGFGGRIIG-KGEPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETPLF K ELYGL+EA+ AI + G V++ EGYMDV+GL+Q G VA LGTA T
Sbjct: 230 SPETPLFSKGQELYGLWEARQAIRQEGQVIVVEGYMDVVGLAQQGIANAVATLGTATTPD 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+KK+L ++ +IFSFDGD AGRRAA RAL+ CL DD I+FLFLP ++DPDSY+R+
Sbjct: 290 HVKKLLRTSDKVIFSFDGDGAGRRAAWRALQACLPVLRDDIAIRFLFLPSEHDPDSYVRE 349
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F + EA++L +F L+E+ +N+ + + + L IP +LR +I
Sbjct: 350 LGAEAFRACLGEAVALSRFLLDELASRHNMDEAEGRASCLHEAKPLLASIP-ECALRVQI 408
Query: 303 ISSLSKIIKVSFNEINNLF 321
++K+++++ E+ +
Sbjct: 409 EREMAKLVQLTPEEMAQVL 427
>gi|423016765|ref|ZP_17007486.1| DNA primase [Achromobacter xylosoxidans AXX-A]
gi|338780193|gb|EGP44608.1| DNA primase [Achromobacter xylosoxidans AXX-A]
Length = 599
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 141/319 (44%), Positives = 201/319 (63%), Gaps = 14/319 (4%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A Y QL+ S AI +LK+RGL EI F LG++ + + L++VF +Y + TL
Sbjct: 32 AAQAHYLKQLRASPAAIRYLKQRGLTGEIAAHFGLGWSGTDRHGLSQVFPNYED-PTLVE 90
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SGLV++ E +RYDRFR R+MFPI+N G +IGFGGR+I E KY+N
Sbjct: 91 SGLVIES-----------EDGRRYDRFRERVMFPIRNARGSLIGFGGRIIG-KGEPKYLN 138
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETPLF K ELYGL+EA+ AI + G V++ EGYMDV+GL+Q G VA LGTA T
Sbjct: 139 SPETPLFSKGQELYGLWEARQAIRQEGQVIVVEGYMDVVGLAQQGIANAVATLGTATTPD 198
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+KK+L ++ +IFSFDGD AGRRAA RAL+ CL DD I+FLFLP ++DPDSY+R+
Sbjct: 199 HVKKLLRTSDKVIFSFDGDGAGRRAAWRALQACLPVLRDDIAIRFLFLPTEHDPDSYVRE 258
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F + EA++L +F L+E+ +N+ + + + L IP +LR +I
Sbjct: 259 LGAEAFRACLGEAVALSRFLLDELASRHNMDEAEGRASCLHEAKPLLASIP-ECALRVQI 317
Query: 303 ISSLSKIIKVSFNEINNLF 321
++K+++++ E+ +
Sbjct: 318 EREMAKLVQLTPEEMAQVL 336
>gi|89900987|ref|YP_523458.1| DNA primase [Rhodoferax ferrireducens T118]
gi|89345724|gb|ABD69927.1| DNA primase [Rhodoferax ferrireducens T118]
Length = 625
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 150/340 (44%), Positives = 226/340 (66%), Gaps = 12/340 (3%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+D Y+ QLK S A+++LK RG++ EI +F LGYAP W +L VF Y++ L S
Sbjct: 125 ANDAYRKQLKESPRAVDYLKGRGVSGEIAKQFGLGYAPEGWRSLASVFPSYDD-PLLVES 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+ + + KRYDRFR R+MFPI+N G+ IGFGGR++ D ++ KY+NS
Sbjct: 184 GLVILNVDENSGEE------KRYDRFRDRVMFPIRNVKGECIGFGGRVLGD-DKPKYLNS 236
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+F K ELYGLFEA+NA+ + GY L+TEGYMDV+ L+Q GF VA LGTACT+ H
Sbjct: 237 PETPVFSKGRELYGLFEARNALHEQGYALVTEGYMDVVALAQLGFSNAVATLGTACTAEH 296
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
+ K+ +T++++FSFDGD AGRRAAR+AL+ L +ATD + +KFLFLP ++DPDS+IR+F
Sbjct: 297 LHKLFRFTDAVVFSFDGDAAGRRAARKALDGALPFATDVRSVKFLFLPPEHDPDSFIREF 356
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F++ V EA+ L +F ++ +L T + N + L+ ++P +L+ +++
Sbjct: 357 GKEAFARYVSEAVPLSRFLIDAAREGCDLNTAEGRAHFASNAKPLWLLLP-DGALKLQLL 415
Query: 304 SSLSKIIKVSFNEINNLFKINTSS---IKHKTIEKKNIQP 340
S ++ ++++S E+ ++ + + K KT EK + P
Sbjct: 416 SEIADLVQLSSRELTEVWNPSAAGKGNAKSKTYEKHSASP 455
>gi|394988324|ref|ZP_10381162.1| hypothetical protein SCD_00727 [Sulfuricella denitrificans skB26]
gi|393792782|dbj|GAB70801.1| hypothetical protein SCD_00727 [Sulfuricella denitrificans skB26]
Length = 587
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/331 (44%), Positives = 202/331 (61%), Gaps = 25/331 (7%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+ +Y+ +LK S+ AI +LKKRGL+ EI RF +GYAP W L VF DY L
Sbjct: 117 MQHATHYYRDELKRSEGAIAYLKKRGLSGEIAARFGIGYAPGGWQNLATVFSDYQ-AKAL 175
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV++ + KRYDRFR RIMFPI N G +IGFGGR++ ++ E KY
Sbjct: 176 VQAGLVIEG------------EGKRYDRFRDRIMFPIINQKGTVIGFGGRVL-ETGEPKY 222
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K ELYGLF+A+ AI +G V++ EGYMDV+ L+Q G VA LGTA T
Sbjct: 223 LNSPETPLFEKGRELYGLFQARQAIRAAGKVIVVEGYMDVVALAQHGVEYAVATLGTATT 282
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T++++F FDGD AGR+AA RALE L D+K I+FLFLP DPDSYI
Sbjct: 283 PVHVQKLLRQTDNVVFCFDGDTAGRKAAWRALENSLALVGDEKSIRFLFLPQGEDPDSYI 342
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL-----S 295
RK G F ++ AM + +F L E+ +++T++ +L PL +
Sbjct: 343 RKEGKAAFEAQLESAMPMSEFLLRELAAGVDMQTMEG------RAHFLKLAQPLVQQVAA 396
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKINTS 326
+LR + LS++ V+ NE+ L + ++
Sbjct: 397 PALRMMLQQRLSELAGVTRNELEGLIPVKST 427
>gi|359798953|ref|ZP_09301522.1| DNA primase [Achromobacter arsenitoxydans SY8]
gi|359363091|gb|EHK64819.1| DNA primase [Achromobacter arsenitoxydans SY8]
Length = 622
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 139/315 (44%), Positives = 200/315 (63%), Gaps = 14/315 (4%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A Y QL+ S A+ +LK+RGL EI F LG++ + + L++VF +Y++ TL
Sbjct: 52 AAQAHYLKQLRASPAAVRYLKQRGLTGEIAAHFGLGWSGTDRHGLSQVFPNYDD-PTLVE 110
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SGLV++ E +RYDRFR RIMFPI+N G +IGFGGR+I E KY+N
Sbjct: 111 SGLVIES-----------EDGRRYDRFRERIMFPIRNVRGSLIGFGGRIIG-KGEPKYLN 158
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETPLF K ELYGL+E + AI + G V++ EGYMDV+GL+Q G VA LGTA T
Sbjct: 159 SPETPLFSKGQELYGLWEGRQAIRQEGQVIVVEGYMDVVGLAQQGIANAVATLGTATTPD 218
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+KK+L ++ +IFSFDGD AGRRAA RAL+ CL DD I+FLFLP ++DPDSY+R+
Sbjct: 219 HVKKLLRTSDKVIFSFDGDGAGRRAAWRALQACLPVLRDDIAIRFLFLPSEHDPDSYVRE 278
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F + +A++L +F L+E+ +N+ + + + L IP +LR +I
Sbjct: 279 LGAEAFRACLGDAVALSRFLLDELASRHNMTEAEGRASCLHEAKPLLAAIP-ECALRVQI 337
Query: 303 ISSLSKIIKVSFNEI 317
++K+++++ E+
Sbjct: 338 EREMAKLVQLTPEEM 352
>gi|421482972|ref|ZP_15930551.1| DNA primase [Achromobacter piechaudii HLE]
gi|400198776|gb|EJO31733.1| DNA primase [Achromobacter piechaudii HLE]
Length = 686
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 139/319 (43%), Positives = 203/319 (63%), Gaps = 14/319 (4%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A Y QL+ S AI +LK+RGL EI F LG++ + + L++VF +Y++ TL
Sbjct: 123 AAQAHYLKQLRASPAAIRYLKQRGLTGEIAAHFGLGWSGTDRHGLSQVFPNYDD-PTLVE 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SGLV++ E +RYDRFR R+MFPI+N G +IGFGGR+I E KY+N
Sbjct: 182 SGLVIES-----------EDGRRYDRFRERVMFPIRNVRGSLIGFGGRIIG-KGEPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETPLF K +ELYGL+EA+ +I + G V++ EGYMDV+GL+Q G VA LGTA T
Sbjct: 230 SPETPLFSKGHELYGLWEARQSIRQEGQVIVVEGYMDVVGLAQQGIANAVATLGTATTPD 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+KK+L ++ +IFSFDGD AGRRAA RAL+ CL DD I+FLFLP ++DPDSY+R+
Sbjct: 290 HVKKLLRTSDKVIFSFDGDGAGRRAAWRALQACLPVLRDDIAIRFLFLPSEHDPDSYVRE 349
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F + +A++L +F L+E+ +N+ + + + L IP +LR +I
Sbjct: 350 LGAEAFRACLADAVALSRFLLDELASRHNMNEAEGRASCLHEAKPLLASIP-ECALRVQI 408
Query: 303 ISSLSKIIKVSFNEINNLF 321
++K+++++ E+ +
Sbjct: 409 EREMAKLVQLTPEEMAQIL 427
>gi|293604555|ref|ZP_06686960.1| DNA primase [Achromobacter piechaudii ATCC 43553]
gi|292817136|gb|EFF76212.1| DNA primase [Achromobacter piechaudii ATCC 43553]
Length = 688
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 140/319 (43%), Positives = 203/319 (63%), Gaps = 14/319 (4%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A Y QL+ S AI +LK+RGL EI F LG++ + + L++VF +Y + TL
Sbjct: 123 AAQAHYLKQLRASPAAIRYLKQRGLTGEIAAHFGLGWSGTDRHGLSQVFPNYED-PTLVE 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SGLV++ E +RYDRFR R+MFPI+N G +IGFGGR+I E KY+N
Sbjct: 182 SGLVIES-----------EDGRRYDRFRERVMFPIRNARGSLIGFGGRIIG-KGEPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETPLF K +ELYGL+EA+ AI + G V++ EGYMDV+GL+Q G VA LGTA T
Sbjct: 230 SPETPLFSKGHELYGLWEARLAIRQEGQVIVVEGYMDVVGLAQQGIANAVATLGTATTPD 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+KK+L ++ +IFSFDGD AGRRAA RAL+ CL DD I+FLFLP ++DPDSY+R+
Sbjct: 290 HVKKLLRASDKVIFSFDGDGAGRRAAWRALQACLPVLRDDIAIRFLFLPTEHDPDSYVRE 349
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F + +A++L +F L+E+ +N+ + + + L IP +LR +I
Sbjct: 350 LGAEAFRACLSDAVALSRFLLDELASRHNMNEAEGRASCLHEAKPLLAAIP-ECALRVQI 408
Query: 303 ISSLSKIIKVSFNEINNLF 321
++K+++++ E++ +
Sbjct: 409 EREMAKLVQLTPEEMSQIL 427
>gi|332284640|ref|YP_004416551.1| DNA primase [Pusillimonas sp. T7-7]
gi|330428593|gb|AEC19927.1| DNA primase [Pusillimonas sp. T7-7]
Length = 622
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 139/318 (43%), Positives = 196/318 (61%), Gaps = 13/318 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A Y +LK S+ AI +LK+RGL+ EI RF LG++ + L VF Y + L S
Sbjct: 99 AQAHYLRELKGSQSAIRYLKQRGLSGEIAARFGLGWSGTDRRGLAAVFPQYEDA-LLVES 157
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV++ + +RYDRFR RIMFPI+N G +IGFGGR+I E KY+NS
Sbjct: 158 GLVIE-----------ADDGRRYDRFRERIMFPIRNARGNLIGFGGRII-GKGEPKYLNS 205
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET LF K +ELYG++E + I GYVL+ EGYMDV+GL+Q G VA LGTA T H
Sbjct: 206 PETGLFSKGHELYGMWEGRAGIRSEGYVLVVEGYMDVVGLAQHGLANAVATLGTATTPFH 265
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+K+L +N I+FSFDGD+AGRRAA RAL CL DD ++FLFLP ++DPDSYI+++
Sbjct: 266 IQKLLRSSNKIVFSFDGDKAGRRAAWRALNTCLPLVRDDVSMRFLFLPAEHDPDSYIKEY 325
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F EA+ L +F L+E+ + L + + + L ++P ++LR +I
Sbjct: 326 GAEAFKATAAEAIPLSRFMLDELASRHALNEAEGRAACAHEAKPLLALLPEGTTLRIQIE 385
Query: 304 SSLSKIIKVSFNEINNLF 321
+K+++++ E+ L
Sbjct: 386 REFAKLVQLTPEELAELM 403
>gi|311105373|ref|YP_003978226.1| DNA primase 1 [Achromobacter xylosoxidans A8]
gi|310760062|gb|ADP15511.1| DNA primase 1 [Achromobacter xylosoxidans A8]
Length = 684
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 139/319 (43%), Positives = 201/319 (63%), Gaps = 14/319 (4%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A Y QL+ S AI +LK+RGL EI F LG++ + + L++VF +Y + L
Sbjct: 123 AAQAHYLKQLRASPAAIRYLKQRGLTGEIAAHFGLGWSGTDRHGLSQVFPNYED-PVLVE 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SGLV++ E +RYDRFR R+MFPI+N G +IGFGGR+I E KY+N
Sbjct: 182 SGLVIES-----------EDGRRYDRFRERVMFPIRNARGSLIGFGGRIIG-KGEPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETPLF K +ELYGL+EA+ AI + G V++ EGYMDV+GL+Q G VA LGTA T
Sbjct: 230 SPETPLFSKGHELYGLWEARLAIRQEGQVIVVEGYMDVVGLAQQGIANAVATLGTATTPD 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+KK+L ++ +IFSFDGD AGRRAA RAL+ CL DD I+FLFLP ++DPDSY+R+
Sbjct: 290 HVKKLLRASDKVIFSFDGDGAGRRAAWRALQACLPVLRDDIAIRFLFLPSEHDPDSYVRE 349
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F + +A++L +F L+E+ +N+ + + + L IP +LR +I
Sbjct: 350 LGAEAFRACLGDAVALSRFLLDELASRHNMNEAEGRASCLHEAKPLLAAIP-ECALRVQI 408
Query: 303 ISSLSKIIKVSFNEINNLF 321
++K+++++ E+ +
Sbjct: 409 EREMAKLVQLTPEEMAQVL 427
>gi|351731434|ref|ZP_08949125.1| DNA primase [Acidovorax radicis N35]
Length = 681
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 146/323 (45%), Positives = 209/323 (64%), Gaps = 12/323 (3%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A D Y+ QL+ S+ AI + K RG++ + R+ LGYAP W +L VF Y++ L S
Sbjct: 125 AGDAYRRQLRESQRAIAYFKARGVSGAVAKRYGLGYAPEGWRSLASVFPHYDD-PLLEES 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I+ + Q KRYDRFR R+MFPI+N G+ IGFGGR++ D ++ KY+NS
Sbjct: 184 GLV---IVGEDGQD------KRYDRFRDRVMFPIRNVKGECIGFGGRVLGD-DKPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGLFEA+ I + GY L+TEGYMDV+ L+Q GF VA LGTACT H
Sbjct: 234 PETPVFHKGRELYGLFEARTPIREHGYALVTEGYMDVVALAQLGFPNAVATLGTACTPEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+L +T S++FSFDGD AGRRAAR+AL+ L +ATD + IKFLFLP ++DPDS+IR+
Sbjct: 294 VQKLLRFTESVVFSFDGDAAGRRAARKALDGALPHATDTRSIKFLFLPAEHDPDSFIREH 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F++ V EA+ L +F +E +L T + N L+ +P L+ +++
Sbjct: 354 GTDAFARHVSEAVPLSRFLVESASDGCDLATAEGRAHMASNARPLWSALP-DGVLKRQVL 412
Query: 304 SSLSKIIKVSFNEINNLFKINTS 326
L+ + ++ ++ +L+ T+
Sbjct: 413 GELADLTQLKAQDLADLWGQATA 435
>gi|319792618|ref|YP_004154258.1| DNA primase [Variovorax paradoxus EPS]
gi|315595081|gb|ADU36147.1| DNA primase [Variovorax paradoxus EPS]
Length = 663
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 212/326 (65%), Gaps = 6/326 (1%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A D Y+ L+ + AI +LK RG++ E+ +F +GYAP W AL VF DY++ LA S
Sbjct: 125 AGDAYRKSLRQAPGAIEYLKGRGVSGEVAKQFGIGYAPAGWRALASVFPDYDD-PLLAES 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I+N + + KRYDRFR R+MFPI+N G+ IGFGGR++ D + KY+NS
Sbjct: 184 GLV---IVNTEDGQLEASEAKRYDRFRDRVMFPIRNVKGECIGFGGRVLGD-EKPKYLNS 239
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+F K ELYGL+EA+ A GY L+TEGYMDV+ L+Q GF VA LGTACT+ H
Sbjct: 240 PETPVFSKGRELYGLYEARAAFRDRGYALVTEGYMDVVALAQLGFPNAVATLGTACTTEH 299
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+ +T S++FSFDGD AGRRAAR+AL+ L YATD + IKFLFLP ++DPDS+IR+
Sbjct: 300 VQKLFRFTESVVFSFDGDAAGRRAARKALDGALPYATDVRSIKFLFLPAEHDPDSFIREH 359
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F++ V EA L +F LE +L T + N+ L+ +P +L+ +++
Sbjct: 360 GAEAFARFVAEATPLSRFMLEAAREGCDLTTAEGRAHMTSNVRPLWSAMP-DGALKRQLL 418
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIK 329
S ++ ++++ +++L+ K
Sbjct: 419 SEIATLVQLDAAALSDLWASTPGPRK 444
>gi|365093303|ref|ZP_09330369.1| DNA primase [Acidovorax sp. NO-1]
gi|363414477|gb|EHL21626.1| DNA primase [Acidovorax sp. NO-1]
Length = 671
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 145/318 (45%), Positives = 211/318 (66%), Gaps = 12/318 (3%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+D Y+ L+ S+ AI + K RG++ + R+ LGYAP W +L VF Y++ L S
Sbjct: 125 AADAYRRHLRESQRAIGYFKGRGVSGTLAKRYGLGYAPEGWRSLASVFASYDD-PLLEES 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I+N + KRYDRFR R+MFPI+N G+ IGFGGR++ D ++ KY+NS
Sbjct: 184 GLV---IVNDEDGG------KRYDRFRDRVMFPIRNVKGECIGFGGRVLGD-DKPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGLFEA+ AI ++GY L+TEGYMDV+ L+Q GF VA LGTACT H
Sbjct: 234 PETPVFHKGRELYGLFEARTAIREAGYALVTEGYMDVVALAQLGFPNAVATLGTACTPEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+L +T S++FSFDGD AGRRAAR+AL+ L +ATD + IKFLFLP ++DPDS+IR
Sbjct: 294 VQKLLRFTESVVFSFDGDAAGRRAARKALDGALHHATDTRSIKFLFLPAEHDPDSFIRAH 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F++ V +AM L +F +E + +L T + N L+ +P L+ +++
Sbjct: 354 GTEAFARLVGDAMPLSRFLVEAASEHCDLGTAEGRAHMASNARPLWTALP-DGVLKRQVL 412
Query: 304 SSLSKIIKVSFNEINNLF 321
L+++ ++ ++ +L+
Sbjct: 413 GELAELTQLKAQDLADLW 430
>gi|120610094|ref|YP_969772.1| DNA primase [Acidovorax citrulli AAC00-1]
gi|120588558|gb|ABM31998.1| DNA primase [Acidovorax citrulli AAC00-1]
Length = 674
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 211/318 (66%), Gaps = 13/318 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A + Y+ L+ S+ AI + K RG++ + R+ LGYAP W +L VF +Y+N L S
Sbjct: 125 AGEAYRRHLRESQRAIAYFKGRGVSGAVAKRYGLGYAPEGWRSLASVFPEYDN-PLLHES 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I+N+ E KRYDRFR R+MFPI+N G+ IGFGGR++ D ++ KY+NS
Sbjct: 184 GLV---IVNE-------EDGKRYDRFRDRVMFPIRNVKGECIGFGGRVLGD-DKPKYLNS 232
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGLFEA+ AI + GY L+TEGYMDV+ L+Q GF VA LGTACT H
Sbjct: 233 PETPVFHKGRELYGLFEARAAIREHGYALVTEGYMDVVALAQLGFPNAVATLGTACTPDH 292
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
+ K+ +T++++FSFDGD AGRRAAR+AL+ L YATD + +KFLFLP ++DPDS++R
Sbjct: 293 VHKLFRFTDTVVFSFDGDAAGRRAARKALDGALPYATDTRSVKFLFLPAEHDPDSFVRAH 352
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F++ V AM L +F +E + +L + + N L+ +P +L+ +++
Sbjct: 353 GTDAFARHVQGAMPLSRFLVEVVGEGCDLGLAEGRARMAANARPLWTALP-DGALKRQLL 411
Query: 304 SSLSKIIKVSFNEINNLF 321
L+++ +++ ++++ L+
Sbjct: 412 GELAELAQLAASDLSELW 429
>gi|239814769|ref|YP_002943679.1| DNA primase [Variovorax paradoxus S110]
gi|239801346|gb|ACS18413.1| DNA primase [Variovorax paradoxus S110]
Length = 659
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 209/318 (65%), Gaps = 9/318 (2%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A + Y+ L+ + AI +LK RG++ E+ +F +GYAP W L VF DY++ LA S
Sbjct: 125 AGEAYRKALRQAPGAIEYLKGRGVSGEVARQFGIGYAPAGWRTLASVFPDYDD-PLLAES 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+ VN E KRYDRFR R+MFPI+N G+ IGFGGR++ D + KY+NS
Sbjct: 184 GLVI------VNAEDGAEDAKRYDRFRDRVMFPIRNVKGECIGFGGRVLGD-EKPKYLNS 236
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+F K ELYGL+EA+ A + G+ L+TEGYMDV+ L+Q GF VA LGTACT+ H
Sbjct: 237 PETPVFSKGRELYGLYEARAAFRERGFALVTEGYMDVVALAQLGFPNAVATLGTACTTEH 296
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+ +T S++FSFDGD AGRRAAR+AL+ L YATD + IKFLFLP ++DPDS+IR+F
Sbjct: 297 VQKLFRFTESVVFSFDGDAAGRRAARKALDGALPYATDVRSIKFLFLPAEHDPDSFIREF 356
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F++ + EA L +F LE +L T + N+ L+ +P +L+ +++
Sbjct: 357 GADAFARFIQEATPLSRFMLEAAREGCDLTTAEGRAHMTSNVRPLWSAMP-DGALKRQLL 415
Query: 304 SSLSKIIKVSFNEINNLF 321
S ++ ++++ ++ L+
Sbjct: 416 SEIAALVQLDAAALSELW 433
>gi|333913226|ref|YP_004486958.1| DNA primase [Delftia sp. Cs1-4]
gi|333743426|gb|AEF88603.1| DNA primase [Delftia sp. Cs1-4]
Length = 677
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 210/318 (66%), Gaps = 13/318 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A D Y+ LK S +AI++LK+RG++ E RF LGYAP W +L VF Y++ L S
Sbjct: 134 AGDAYRRHLKASPQAIDYLKRRGVSGETAKRFGLGYAPAGWRSLASVFPQYDDPQ-LEES 192
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I+ + + KRYDRFR R+MFPI+N G+ IGFGGR+ D + KY+NS
Sbjct: 193 GLV---IVGEGDD-------KRYDRFRDRLMFPIRNVKGECIGFGGRVFGD-EKPKYLNS 241
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGLFEA+ A+ GY L+TEGYMDV+ L+Q GF VA LGTACT H
Sbjct: 242 PETPVFHKGRELYGLFEARTALRDMGYALVTEGYMDVVALAQLGFANAVATLGTACTPDH 301
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I K+ +T +++FSFDGD AGRRAAR+AL+ L YA+D + +KFLFLP ++DPDS+IR++
Sbjct: 302 IHKLFRFTEAVVFSFDGDAAGRRAARKALDAALPYASDTRSVKFLFLPAEHDPDSFIREY 361
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F++ V +A+ L +F +E +L + N L+ +P +L+ +++
Sbjct: 362 GSEAFARYVGDALPLSRFLIEAASEGCDLGQAEGRAHMASNARPLWTALP-DGALKRQLL 420
Query: 304 SSLSKIIKVSFNEINNLF 321
+++++++ ++++L+
Sbjct: 421 GEIAELVQLDARDLSDLW 438
>gi|160900476|ref|YP_001566058.1| DNA primase [Delftia acidovorans SPH-1]
gi|160366060|gb|ABX37673.1| DNA primase [Delftia acidovorans SPH-1]
Length = 677
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 210/318 (66%), Gaps = 13/318 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A D Y+ LK S +AI++LK+RG++ E RF LGYAP W +L VF Y++ L S
Sbjct: 134 AGDAYRKHLKASPQAIDYLKRRGVSGETAKRFGLGYAPAGWRSLASVFPQYDDPQ-LEES 192
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I+ + + KRYDRFR R+MFPI+N G+ IGFGGR+ D + KY+NS
Sbjct: 193 GLV---IVGEGDD-------KRYDRFRDRLMFPIRNVKGECIGFGGRVFGD-EKPKYLNS 241
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGLFEA+ A+ GY L+TEGYMDV+ L+Q GF VA LGTACT H
Sbjct: 242 PETPVFHKGRELYGLFEARTALRDMGYALVTEGYMDVVALAQLGFANAVATLGTACTPDH 301
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I K+ +T +++FSFDGD AGRRAAR+AL+ L YA+D + +KFLFLP ++DPDS+IR++
Sbjct: 302 IHKLFRFTEAVVFSFDGDAAGRRAARKALDAALPYASDTRSVKFLFLPAEHDPDSFIREY 361
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F++ V +A+ L +F +E +L + N L+ +P +L+ +++
Sbjct: 362 GSEAFARYVGDALPLSRFLIEAASEGCDLGQAEGRAHMASNARPLWTALP-DGALKRQLL 420
Query: 304 SSLSKIIKVSFNEINNLF 321
+++++++ ++++L+
Sbjct: 421 GEIAELVQLDARDLSDLW 438
>gi|325983603|ref|YP_004296005.1| DNA primase [Nitrosomonas sp. AL212]
gi|325533122|gb|ADZ27843.1| DNA primase [Nitrosomonas sp. AL212]
Length = 599
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 170/440 (38%), Positives = 253/440 (57%), Gaps = 30/440 (6%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINT- 59
M A+ FY+ QLKNS++AI +LKKRG + E RF +GYAP W L VF DY + T
Sbjct: 134 MQIATRFYREQLKNSEKAIAYLKKRGFSGESAARFAIGYAPAGWQNLQTVFSDYKSEKTR 193
Query: 60 --LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +GLV+ V ++ K+YDRFR RIMFPI N GQIIGFGGR++ D E
Sbjct: 194 NLLVQAGLVI-----------VGDEDKQYDRFRNRIMFPILNQKGQIIGFGGRVL-DDEE 241
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET LF K ELY LF A+ AI + L+ EGYMDVI L+Q+G TVA LGT
Sbjct: 242 PKYLNSPETILFEKGRELYNLFSARRAIREVNCALVVEGYMDVISLAQYGIDYTVASLGT 301
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ TS H++K+L T+ IIF FDGD+AGR+AA RALE L +D K++ FLFLP+ DPD
Sbjct: 302 STTSFHLQKLLRQTDQIIFCFDGDKAGRKAAWRALENSLALLSDGKLLSFLFLPEGTDPD 361
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SYI+K G K F + + +++ L +F +E+ +++T + K + + L + + +++
Sbjct: 362 SYIKKNGRKSFEQLLKQSIPLSEFLFKELCSRIDIQTSEGRAKLINDAKPLLQQV-TAAA 420
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
L ++ L+++ + +E+ +I SS K+ T + Q +++ +L+ P+
Sbjct: 421 LSLMLLKRLAELSNIDQSELEEKLQIKPSSKKYVTRKAPPKQLATPYRRLIMMLLHNPNY 480
Query: 358 INEINSEDMIIFSKCSQN-----YVKMFFQLID-TIHIFKNDIDHSKFIKYL-----KKI 406
IN +N FS+ +N +K +L D H+ +++ S YL + +
Sbjct: 481 INRLNRN---WFSEEKENSKEITALKSLIELFDKNPHLINSELPTSTIFAYLQDSAHRTL 537
Query: 407 NKNFESIIVKIQDNFEYSIE 426
+N ES +K D + E
Sbjct: 538 LENIESETLKWDDAIDLEAE 557
>gi|326316263|ref|YP_004233935.1| DNA primase [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323373099|gb|ADX45368.1| DNA primase [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 679
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 209/318 (65%), Gaps = 13/318 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A + Y+ L+ S+ AI + K RG++ + R+ LGYAP W L VF +Y+N L S
Sbjct: 125 AGEAYRRHLRESQRAIAYFKGRGVSGAVAKRYGLGYAPEGWRTLASVFPEYDN-PLLHES 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I+N+ E KRYDRFR R+MFPI+N G+ IGFGGR++ D ++ KY+NS
Sbjct: 184 GLV---IVNE-------EDGKRYDRFRDRVMFPIRNVKGECIGFGGRVLGD-DKPKYLNS 232
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGLFEA+ AI + GY L+TEGYMDV+ L+Q GF VA LGTACT H
Sbjct: 233 PETPVFHKGRELYGLFEARTAIREHGYALVTEGYMDVVALAQLGFPNAVATLGTACTPEH 292
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
+ K+ +T++++FSFDGD AGRRAAR+AL+ L YATD + +KFLFLP ++DPDS++R
Sbjct: 293 VHKLFRFTDTVVFSFDGDAAGRRAARKALDGALPYATDTRSVKFLFLPAEHDPDSFVRAH 352
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F++ V AM L +F +E +L + + N L+ +P +L+ +++
Sbjct: 353 GTDAFARHVQGAMPLSRFLVEAASEGCDLGLAEGRARMAANARPLWTALP-DGALKRQLL 411
Query: 304 SSLSKIIKVSFNEINNLF 321
L+++ +++ ++++L+
Sbjct: 412 GELAELAQLTSADLSDLW 429
>gi|388565441|ref|ZP_10151932.1| DNA primase [Hydrogenophaga sp. PBC]
gi|388267330|gb|EIK92829.1| DNA primase [Hydrogenophaga sp. PBC]
Length = 653
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 145/319 (45%), Positives = 207/319 (64%), Gaps = 8/319 (2%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A DF K QLK S AI++LK RGL+ +I F LGYAP W L VF DY + L
Sbjct: 125 AARDFQK-QLKASPRAIDYLKGRGLSGQIAKVFGLGYAPEGWRHLAGVFPDYQS-PLLTE 182
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SGLV++ K + KRYDRFR R+MFPI+N G+ IGFGGR++ D E KY+N
Sbjct: 183 SGLVIEHADEKGQDG----QAKRYDRFRDRVMFPIRNVKGECIGFGGRVL-DKGEPKYLN 237
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETP+F K ELYGLFEA+ AI + GY L+TEGYMDV+ L+Q GF VA LGTACT+
Sbjct: 238 SPETPVFSKGRELYGLFEARTAIRQHGYALVTEGYMDVVALAQLGFGNAVATLGTACTAD 297
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H++K+ +T++++FSFDGD AGRRAAR+AL+ L +A+D + +KFLFLP ++DPDS+IR+
Sbjct: 298 HVQKLFRFTDAVVFSFDGDAAGRRAARKALDAALPWASDTRSVKFLFLPTEHDPDSFIRE 357
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G F+ +V E++ L +F LE + L T + + L+ +P +L+ ++
Sbjct: 358 HGTDAFAARVKESVPLSRFLLEAASADCELDTAEGRARMASQARPLWSALP-EGALKSQL 416
Query: 303 ISSLSKIIKVSFNEINNLF 321
++ +++ + ++ L+
Sbjct: 417 LADIAQTAALDAQDLLRLW 435
>gi|339481776|ref|YP_004693562.1| DNA primase [Nitrosomonas sp. Is79A3]
gi|338803921|gb|AEJ00163.1| DNA primase [Nitrosomonas sp. Is79A3]
Length = 599
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 166/424 (39%), Positives = 247/424 (58%), Gaps = 28/424 (6%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINT---L 60
A+ FY+ QLK S++AI +LKKRGL+ + RF +GYAP W L VF DY + T L
Sbjct: 138 ATRFYREQLKISEKAIAYLKKRGLSGKTAARFAIGYAPAGWQNLETVFSDYKSERTRKIL 197
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLVV IN ++ K+YDRFR RIMFPI N GQIIGFGGR++ E KY
Sbjct: 198 LLAGLVV---IN--------DEAKQYDRFRDRIMFPILNQKGQIIGFGGRVLA-QEEPKY 245
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPET LF K ELY F A+ AI ++ V++ EGYMDVI LSQ+G VA LGTA T
Sbjct: 246 LNSPETALFEKGRELYNFFSARRAIREANCVIVVEGYMDVIALSQYGIDYAVAALGTATT 305
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
S HI+K+L T++IIF FDGD+AGR+AA RALE L +D K + FLFLP+ DPDSY+
Sbjct: 306 SFHIQKLLRQTDNIIFCFDGDKAGRKAAWRALENSLALLSDGKYLSFLFLPEGADPDSYV 365
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
++G + F +++ +A+ L +F E+ NL+T + K + + L + + + +L
Sbjct: 366 NQYGKESFEQQLKQAIPLSEFLFRELCSGANLQTSEGRAKLVSDAKPLLQQV-AAPALSV 424
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
++ L ++ ++ E+ L +I + H QPI +++++L+ PS I +
Sbjct: 425 MLVRRLGELSGINQGELEGLLQIKRAPRTHSVKNTSRKQPITPYRRLVRMLLYSPSHIAK 484
Query: 361 INSEDMIIFSKCSQN--YVKMFFQLIDTI----HIFKNDIDHSKFIKYLKKINKNFESII 414
+ D + + S+N V L+D + H+ + HS + YL+ N + +++
Sbjct: 485 L---DRYLLVQSSENNEEVAALNALVDFLDTHPHLIVSKSAHS-ILTYLQ--NSPYRALL 538
Query: 415 VKIQ 418
I+
Sbjct: 539 EDIE 542
>gi|398808667|ref|ZP_10567527.1| DNA primase, catalytic core [Variovorax sp. CF313]
gi|398087019|gb|EJL77617.1| DNA primase, catalytic core [Variovorax sp. CF313]
Length = 674
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 213/326 (65%), Gaps = 6/326 (1%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A D Y+ L+ + AI +LK RG++ E+ +F +GYAP W AL VF DY++ LA S
Sbjct: 125 AGDAYRKHLRQAPGAIEYLKGRGVSGEVAKQFGIGYAPAGWRALASVFPDYDD-PLLAES 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+ + N+ Q E KRYDRFR R+MFPI+N G+ IGFGGR++ D + KY+NS
Sbjct: 184 GLVI--VNNEEGQLSEAEA-KRYDRFRDRVMFPIRNVKGECIGFGGRVLGD-EKPKYLNS 239
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+F K ELYGL+EA+ A GY L+TEGYMDV+ L+Q GF VA LGTACT+ H
Sbjct: 240 PETPVFSKGRELYGLYEARAAFRDRGYALVTEGYMDVVALAQLGFPNAVATLGTACTTEH 299
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+ +T S++FSFDGD AGRRAAR+AL+ L YATD + IKFLFLP ++DPDS+IR+
Sbjct: 300 VQKLFRFTESVVFSFDGDAAGRRAARKALDGALPYATDVRSIKFLFLPAEHDPDSFIREH 359
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F++ V EA L +F LE +L + + N+ L+ +P +L+ +++
Sbjct: 360 GAEAFARFVNEATPLSRFMLEAAREGCDLTSAEGRAHMTSNVRPLWSAMP-DGALKRQLL 418
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIK 329
S ++ ++++ +++L+ K
Sbjct: 419 SEIATLVQLDAAALSDLWASTPGPRK 444
>gi|121595442|ref|YP_987338.1| DNA primase [Acidovorax sp. JS42]
gi|120607522|gb|ABM43262.1| DNA primase [Acidovorax sp. JS42]
Length = 653
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 140/318 (44%), Positives = 210/318 (66%), Gaps = 13/318 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A D ++ L+ S A+ + K RG++ ++ R+ LGYAP W L VF +Y++ L S
Sbjct: 131 AGDAWRRHLRESPRAVQYFKGRGVSGQVAKRYGLGYAPEGWRGLASVFPEYDS-PLLEES 189
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I+N+ E KRYDRFR R+MFPI+N G+ IGFGGR++ D ++ KY+NS
Sbjct: 190 GLV---IVNE-------EDGKRYDRFRDRVMFPIRNVKGECIGFGGRVLGD-DKPKYLNS 238
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGL+EA+NAI + GY L+TEGYMDV+ L+Q GF VA LGTACT H
Sbjct: 239 PETPVFHKGRELYGLYEARNAIREHGYALVTEGYMDVVALAQLGFPNAVATLGTACTPEH 298
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
+ K+ +T++++FSFDGD AGRRAAR+AL+ L YA+D + +KFLFLP ++DPDS++R +
Sbjct: 299 VHKLFRFTDTVVFSFDGDAAGRRAARKALDGALPYASDTRSVKFLFLPAEHDPDSFVRAY 358
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F++ V +A+ L +F LE +L T + N L+ +P +L+ +++
Sbjct: 359 GPEAFARHVGDAVPLSRFLLEAAREGCDLGTAEGRAHMLSNARPLWAALP-DGALKRQLL 417
Query: 304 SSLSKIIKVSFNEINNLF 321
+ L ++ ++ ++ L+
Sbjct: 418 TELGELGQLPAPDLAQLW 435
>gi|222111656|ref|YP_002553920.1| DNA primase [Acidovorax ebreus TPSY]
gi|221731100|gb|ACM33920.1| DNA primase [Acidovorax ebreus TPSY]
Length = 658
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 211/323 (65%), Gaps = 13/323 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A D ++ L+ S A+ + K RG++ ++ R+ LGYAP W L VF +Y++ L S
Sbjct: 131 AGDAWRRHLRESPRAVQYFKGRGVSGQVAKRYGLGYAPEGWRGLASVFPEYDS-PLLEES 189
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I+N E KRYDRFR R+MFPI+N G+ IGFGGR++ D ++ KY+NS
Sbjct: 190 GLV---IVND-------EDGKRYDRFRDRVMFPIRNVKGECIGFGGRVLGD-DKPKYLNS 238
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGL+EA+NAI + GY L+TEGYMDV+ L+Q GF VA LGTACT H
Sbjct: 239 PETPVFHKGRELYGLYEARNAIREHGYALVTEGYMDVVALAQLGFPNAVATLGTACTPEH 298
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
+ K+ +T++++FSFDGD AGRRAAR+AL+ L YA+D + +KFLFLP ++DPDS++R +
Sbjct: 299 VHKLFRFTDTVVFSFDGDAAGRRAARKALDGALPYASDTRSVKFLFLPAEHDPDSFVRAY 358
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F++ V +A+ L +F LE +L T + N L+ +P +L+ +++
Sbjct: 359 GPEAFARHVGDAVPLSRFLLEAAREGCDLGTAEGRAHMLSNARPLWAALP-DGALKRQLL 417
Query: 304 SSLSKIIKVSFNEINNLFKINTS 326
+ L ++ ++ ++ L+ ++
Sbjct: 418 TELGELGQLPAPDLAQLWAQDSP 440
>gi|187478820|ref|YP_786844.1| DNA primase [Bordetella avium 197N]
gi|115423406|emb|CAJ49940.1| DNA primase [Bordetella avium 197N]
Length = 674
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 134/306 (43%), Positives = 199/306 (65%), Gaps = 14/306 (4%)
Query: 12 LKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLVVDKII 71
L++S EAI +LK+RGL + F LG++ + + L KVF +Y++ TL +GLV++
Sbjct: 132 LRSSPEAIAYLKQRGLTGAVAKTFGLGWSGTDRHGLAKVFDNYDD-PTLVEAGLVIES-- 188
Query: 72 NKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHK 131
E +RYDRFR RIMFPI+N G +IGFGGR+I E KY+NSPETP+F K
Sbjct: 189 ---------EDGRRYDRFRERIMFPIRNARGSLIGFGGRIIG-KGEPKYLNSPETPIFSK 238
Query: 132 SNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYT 191
+ELYGL+E + AI ++G V++ EGYMDV+GL+Q G VA LGT+ T H+KK+L +
Sbjct: 239 GHELYGLWEGRLAIRQAGVVIVVEGYMDVVGLAQLGIGNAVATLGTSTTPDHVKKLLRAS 298
Query: 192 NSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKK 251
+ ++FSFDGD AGRRAA RAL+ CL DD I+FLFLP ++DPDSY+R+FG + F +
Sbjct: 299 DKVVFSFDGDSAGRRAAWRALQACLPVLRDDISIRFLFLPSEHDPDSYVREFGAEAFRDQ 358
Query: 252 VLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIISSLSKIIK 311
+ +A +L +F L+E+ +NL + + + L IP L+ +I ++K+++
Sbjct: 359 MAQASALSRFLLDELASRHNLGEAEGRASCLHEAKPLLAEIP-ECGLKTQIEREMAKLVQ 417
Query: 312 VSFNEI 317
++ E+
Sbjct: 418 LTPEEM 423
>gi|291614900|ref|YP_003525057.1| DNA primase [Sideroxydans lithotrophicus ES-1]
gi|291585012|gb|ADE12670.1| DNA primase [Sideroxydans lithotrophicus ES-1]
Length = 578
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 153/448 (34%), Positives = 246/448 (54%), Gaps = 31/448 (6%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+ +Y+ QLK + AI++LK+RGL+ E+ RF +GYAP++W L V +Y + +L
Sbjct: 114 MQSATRYYREQLKQTPRAIDYLKRRGLSGEVAARFGIGYAPDDWQNLKAVVPNYQDA-SL 172
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV++ E KRYDRFR RIMFPI N GQ+IGFGGR++ D E KY
Sbjct: 173 VETGLVIEG-----------EGGKRYDRFRDRIMFPIVNVRGQVIGFGGRVL-DKGEPKY 220
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPET LF K +ELYGLF+A+ AI V++ EGYMD + L+Q G VA LGTA T
Sbjct: 221 LNSPETTLFEKGHELYGLFQAQKAIRAHQRVIVVEGYMDAVALAQHGVEYAVATLGTATT 280
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L + ++F FDGD+AG++AA RALE L D K + FLFLP+++DPD+YI
Sbjct: 281 PYHVQKLLRLCDQVVFCFDGDRAGQKAAWRALENALPQLQDGKRLGFLFLPEEHDPDTYI 340
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKII--PLSSSL 298
R+FG++ F ++ ++ L + L E+ +L+T + N + L I P ++ L
Sbjct: 341 REFGHEAFELELENSLPLSGYLLRELTAQVDLRTQEGKSTLLKNAQPLLTAITAPTTALL 400
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKK--NIQPICIEYQIMKLLISYPS 356
K +++L+ + + E+ L+ I + + K P + +++ L+ P
Sbjct: 401 LRKEVAALAGVTQA---ELEALWSIKPVAAPQRAAPPKARRTTPSGLR-SLLRCLVMKPE 456
Query: 357 LINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK-----KINKNFE 411
L ++ + + N L D +H +++ + + + + +
Sbjct: 457 LARQLPGD--WLHGHAEGNEAAAIAALADWLHEGADEVSTAALTQQFQGTMHGPVFATAQ 514
Query: 412 SIIVKIQDNFEYSIEIA---KKTLLDAI 436
I+ + D+F+ E + +K LDA+
Sbjct: 515 GDIMHLGDDFDIGAEFSGLLRKMQLDAV 542
>gi|253997428|ref|YP_003049492.1| DNA primase [Methylotenera mobilis JLW8]
gi|253984107|gb|ACT48965.1| DNA primase [Methylotenera mobilis JLW8]
Length = 595
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 160/450 (35%), Positives = 250/450 (55%), Gaps = 31/450 (6%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A++FYK +LK S AI +LK RGL+ ++ +F +GYAP W L VF Y N L +
Sbjct: 135 AANFYKAELKKSPRAIEYLKARGLSGQVAAKFQVGYAPAGWQNLQSVFPQYEN-EALTVA 193
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLVV+ E+ +RYDRFR RIMFPI + GQ+IGFGGR+I + KY NS
Sbjct: 194 GLVVEN-----------EQGRRYDRFRDRIMFPIHDQKGQVIGFGGRVINPEDTPKYYNS 242
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETPLF K +ELYGLF A+ AI +G L+ EGYMDV+ L+Q+G VA LGTA T H
Sbjct: 243 PETPLFQKGHELYGLFLARRAIRDAGRALVVEGYMDVVALAQYGIEYAVAALGTATTPYH 302
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I K+ + I+F FDGD AGR AA RA L TD + FLFLP ++DPDSY+R+F
Sbjct: 303 ITKLTRQADEIVFCFDGDNAGRTAAWRAAMNALPALTDGLKLSFLFLPKEHDPDSYVREF 362
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F ++ AM L Q+ L+ + + L++ +D + E + + I S + +
Sbjct: 363 GKEKFEAEIKSAMPLSQYILQHLSEDNPLQSQEDRVRFLNEAEPIMQQISAPRSAMY-LR 421
Query: 304 SSLSKIIKVSFNEINNLFKI-NTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEIN 362
++++ ++S +E+ L K+ N + K K + ++ + +L+ +P L E
Sbjct: 422 KKVAELAQLSADEMQALLKLPNLNKAPMKAKPKLTRTTMSLQKRFGLMLLMHPELAQE-- 479
Query: 363 SEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFES-IIVKIQ--- 418
+D+ + S+ + + Q+I+ + HSK L+++ ++ ++ ++Q
Sbjct: 480 -DDLELLSE-RDDADALLRQVIEICLLHP----HSKPAVLLRELESKIDANVLPELQREL 533
Query: 419 ----DNFEYSIEIA-KKTLLDAIYKDRKSV 443
D +++ E+A + L A++ R+S
Sbjct: 534 TLLDDTLDHAQELAGARQQLQAVHTQRQSA 563
>gi|334131317|ref|ZP_08505082.1| Putative DNA primase [Methyloversatilis universalis FAM5]
gi|333443666|gb|EGK71628.1| Putative DNA primase [Methyloversatilis universalis FAM5]
Length = 590
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/416 (37%), Positives = 228/416 (54%), Gaps = 29/416 (6%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+ FYK QLK + AI++LK RGL EI RF +GYAP +W +L F DY+ L
Sbjct: 117 MARAAQFYKQQLKKNPRAIDYLKGRGLTGEIAARFGIGYAPGDWQSLRDAFDDYD-APAL 175
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
A GLV+D ++ K +RYDRFR RIMFPI + +IGFGGR++ D E KY
Sbjct: 176 AECGLVIDAEASEGQT-----KGRRYDRFRDRIMFPILDGRNNVIGFGGRVL-DRGEPKY 229
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K ELYGL +A+ +I G+VL+ EGYMDV+ L+QFG VA LGTA T
Sbjct: 230 LNSPETPLFSKGRELYGLSQARTSIRDDGFVLVVEGYMDVVALAQFGVGSAVATLGTATT 289
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
HI K+ T+ I+F FDGD+AGR+AA R LE L D + + FLFLP ++DPDS++
Sbjct: 290 PDHIHKLFRQTDRIVFCFDGDRAGRKAAWRGLESALPELGDGRAVSFLFLPPEHDPDSFV 349
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL-----S 295
R+ G + F + L A L ++ L E L+T D ++ +++ + PL +
Sbjct: 350 REQGAERFRQLALSAQPLSEYLLHE------LQTRCDTRSAEGRAQFVSEARPLVTQVPA 403
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKI----NTSSIKHK--TIEKKNIQPICIEYQIMK 349
+LR +++ L+ + +S E + S HK + P +++
Sbjct: 404 GALRTQLLHLLAPAVGLSAEEFAEACGLRLPRRNSRFGHKAPPPAAPRVPPTTPARKLLC 463
Query: 350 LLISYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDH-SKFIKYLK 404
+L+ PSL +I + I +++ + D I D +H + ++Y +
Sbjct: 464 MLMQRPSLGGKIGHLENIEHDP----WLQAVQAVADCIEHGDADSEHPAALVEYFR 515
>gi|296136131|ref|YP_003643373.1| DNA primase [Thiomonas intermedia K12]
gi|295796253|gb|ADG31043.1| DNA primase [Thiomonas intermedia K12]
Length = 624
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 211/331 (63%), Gaps = 7/331 (2%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A FY+ +L++S+ A N+L RGL ++ +F LGYAP++W L F +YN + L
Sbjct: 126 TADGFYQHRLRHSERAKNYLIARGLQGQVAKKFGLGYAPDDWQPLAGAFANYN-ADALVQ 184
Query: 63 SGLVVDKIINKVNQSPVIEKY----KRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
SGLVV + P E + +RYDR R RI FPI+N G++IGFGGR+I D E
Sbjct: 185 SGLVVARDAAGDTLDPQAESFASAQRRYDRLRDRITFPIRNLRGEVIGFGGRII-DQGEP 243
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPET +FHK ELYGLFEA++AI ++GY L+ EGYMDV+ L+QFG Q VA LGTA
Sbjct: 244 KYLNSPETAVFHKGEELYGLFEARSAISRAGYALVVEGYMDVVALAQFGVEQAVATLGTA 303
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
CT+ ++K+ +T ++FSFDGD AGRRAARRA+E L +D +++KFLFLP ++DPDS
Sbjct: 304 CTAQQLQKLFRHTGQVVFSFDGDTAGRRAARRAMEQALPLLSDTRVVKFLFLPAEHDPDS 363
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSL 298
Y+R+ G + F +++ A L +F + + T + ++ + L I + +L
Sbjct: 364 YVREKGAEAFEREIGRAQPLSEFLFSSLFDGVAMTTAEGRAQAIHEAGPLLSQI-TAPAL 422
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSSIK 329
++++ L++ +++ E+ + ++++ S K
Sbjct: 423 LGQLVADLARRLEMPATELREVLRLSSPSRK 453
>gi|410693941|ref|YP_003624563.1| putative DNA primase [Thiomonas sp. 3As]
gi|294340366|emb|CAZ88747.1| putative DNA primase [Thiomonas sp. 3As]
Length = 626
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 212/331 (64%), Gaps = 7/331 (2%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A FY+ +L++S+ A N+L RGL ++ +F LGYAP++W L F +YN + L
Sbjct: 126 TADGFYQHRLRHSERAKNYLIARGLQGQVAKKFGLGYAPDDWQPLAGAFANYN-ADALVQ 184
Query: 63 SGLVVDKIINKVNQSPVIEKY----KRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
SGLVV + P E + +RYDR R RI FPI+N G++IGFGGR+I D +E
Sbjct: 185 SGLVVARDAAGDTLDPQAESFASAQRRYDRLRDRITFPIRNLRGEVIGFGGRII-DQSEP 243
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPET +FHK ELYGLFEA++AI ++GY L+ EGYMDV+ L+QFG Q VA LGTA
Sbjct: 244 KYLNSPETAVFHKGEELYGLFEARSAISRAGYALVVEGYMDVVALAQFGVEQAVATLGTA 303
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
CT+ ++K+ +T ++FSFDGD AGRRAARRA+E L +D +++KFLFLP ++DPDS
Sbjct: 304 CTAQQLQKLFRHTGQVVFSFDGDTAGRRAARRAMEQALPLLSDTRVVKFLFLPAEHDPDS 363
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSL 298
Y+R+ G + F +++ A L +F + + T + ++ + L I + +L
Sbjct: 364 YVREKGAEAFEREIGRAQPLSEFLFSSLFDGVAMTTAEGRAQAIHEAGPLLSQI-TAPAL 422
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSSIK 329
++++ L++ +++ E+ + ++++ S K
Sbjct: 423 LGQLVADLARRLEMPATELREVLRLSSPSRK 453
>gi|121607097|ref|YP_994904.1| DNA primase [Verminephrobacter eiseniae EF01-2]
gi|121551737|gb|ABM55886.1| DNA primase [Verminephrobacter eiseniae EF01-2]
Length = 653
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 143/323 (44%), Positives = 214/323 (66%), Gaps = 12/323 (3%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+ Y+ L ++ AI + K RG++ I R+ LGYAP+ W +L F Y++ LA S
Sbjct: 125 AAAAYRQHLHDTPHAIAYFKSRGVSGAIAERYGLGYAPDGWRSLASCFARYDD-PLLAES 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I+N + KRYDRFR R+MFPI+N G+ IGFGGR++ ++ KY+NS
Sbjct: 184 GLV---IVNAEDGG------KRYDRFRNRVMFPIRNVKGECIGFGGRVLG-QDKPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK +ELYGLFEA++AI + GY L+TEGYMDV+ L+Q GF TVA LGTACT H
Sbjct: 234 PETPVFHKGHELYGLFEARSAIHEQGYALVTEGYMDVVALAQRGFPNTVATLGTACTPEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+L +T S++FSFDGD AGRRAAR+AL+ L +A+D + IKFLFLP ++DPDS+IR
Sbjct: 294 VQKLLRFTASVVFSFDGDAAGRRAARKALDGALPHASDTRSIKFLFLPAEHDPDSFIRSH 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F++ V +A+ L +F LE +L + + N L+ +P L+ +++
Sbjct: 354 GPEAFARHVGDAVPLSRFLLETASEGCDLGSAEGRAHMASNARPLWTALP-DGVLKRQLL 412
Query: 304 SSLSKIIKVSFNEINNLFKINTS 326
+ L+++ ++ ++++L+ + S
Sbjct: 413 AELAQLTQLDARDLSDLWSPDHS 435
>gi|417956970|ref|ZP_12599901.1| DNA primase [Neisseria weaveri ATCC 51223]
gi|343969402|gb|EGV37616.1| DNA primase [Neisseria weaveri ATCC 51223]
Length = 518
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 154/362 (42%), Positives = 215/362 (59%), Gaps = 30/362 (8%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+ FY QLK S+ A +L +RGL+ E+I + LGYAP+ W L ++F Y + L
Sbjct: 52 TAASFYIQQLKQSQRAQTYLNQRGLSPEVIEHYGLGYAPDGWQPLAQIFTPYPS-TPLVE 110
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SG+V++K K YDRFR RIMFPI+N GQ+IGFGGR++ D E KY+N
Sbjct: 111 SGMVIEK------------DGKHYDRFRDRIMFPIRNQRGQVIGFGGRIL-DKGEPKYLN 157
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETPLF K LYGL E + AI+++G +L+ EGYMDV+ L+QFG +VA LGTA T+
Sbjct: 158 SPETPLFDKGRNLYGLHEGRAAIKEAGRILVVEGYMDVVALAQFGISYSVASLGTATTAD 217
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
HIK ++ T+SI F FDGD+AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 218 HIKLLMRQTDSIYFCFDGDRAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 277
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F EEI NL T + E K + L +I + +L F
Sbjct: 278 YGKNQFEDALLNQSKPLSEYFWEEISDGLNLNTQEGKAELIKTSAPLLAQIT--APALSF 335
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEK----------KNIQPICIEYQIMKL 350
+ LS+I+ + + L I + K++ +K + P ++ QI L
Sbjct: 336 LLKQKLSEIVGIDPTNLAGL--IGQEAPKYQAKQKSYKLPAQTARQPPMPTLLQRQIRSL 393
Query: 351 LI 352
LI
Sbjct: 394 LI 395
>gi|345876371|ref|ZP_08828143.1| hypothetical protein l11_22330 [Neisseria weaveri LMG 5135]
gi|343966618|gb|EGV34873.1| hypothetical protein l11_22330 [Neisseria weaveri LMG 5135]
Length = 589
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 154/361 (42%), Positives = 215/361 (59%), Gaps = 30/361 (8%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+ FY QLK S+ A +L +RGL+ E+I + LGYAP+ W L ++F Y + L S
Sbjct: 124 AASFYIQQLKQSQRAQTYLNQRGLSPEVIEHYGLGYAPDGWQPLAQIFTPYPS-TPLVES 182
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G+V++K K YDRFR RIMFPI+N GQ+IGFGGR++ D E KY+NS
Sbjct: 183 GMVIEK------------DGKHYDRFRDRIMFPIRNQRGQVIGFGGRIL-DKGEPKYLNS 229
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETPLF K LYGL E + AI+++G +L+ EGYMDV+ L+QFG +VA LGTA T+ H
Sbjct: 230 PETPLFDKGRNLYGLHEGRAAIKEAGRILVVEGYMDVVALAQFGISYSVASLGTATTADH 289
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
IK ++ T+SI F FDGD+AGR+AA RALE L DDK + FLFLP+++DPDSYIR +
Sbjct: 290 IKLLMRQTDSIYFCFDGDRAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAY 349
Query: 244 GYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRFK 301
G F +L ++ L ++F EEI NL T + E K + L +I + +L F
Sbjct: 350 GKNQFEDALLNQSKPLSEYFWEEISDGLNLNTQEGKAELIKTSAPLLAQIT--APALSFL 407
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEK----------KNIQPICIEYQIMKLL 351
+ LS+I+ + + L I + K++ +K + P ++ QI LL
Sbjct: 408 LKQKLSEIVGIDPTNLAGL--IGQEAPKYQAKQKSYKLPAQTARQPPMPTLLQRQIRSLL 465
Query: 352 I 352
I
Sbjct: 466 I 466
>gi|296314330|ref|ZP_06864271.1| DNA primase [Neisseria polysaccharea ATCC 43768]
gi|296838969|gb|EFH22907.1| DNA primase [Neisseria polysaccharea ATCC 43768]
Length = 590
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 160/428 (37%), Positives = 242/428 (56%), Gaps = 37/428 (8%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QL+ + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLRFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + + NL T + E K + L +I + +L +
Sbjct: 349 YGKTQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLVQIT--APALGY 406
Query: 301 KIISSLSKIIKVSFNEINNLF--KINTSSIKHKTIE------KKNIQPICIEYQIMKLLI 352
+ LS+++ + + + L + +K K+ + K+ + P ++ QI LLI
Sbjct: 407 LLKQRLSELVGIDPDNLAQLLGQEAPKQHVKQKSYKLPPISVKQPVMPTLVQRQIRSLLI 466
Query: 353 SYPSLINEINSEDMIIFS---KCSQNY---VKMFFQLIDTIHIFKNDIDHSKFIKYLKKI 406
+ P I+ D + C N +K + T I ++H + Y + I
Sbjct: 467 N-PDWAAYIDLPDYLALDGDFACLANLAETIKSHPSVPATAQI----LEHMRGSPYEETI 521
Query: 407 NKNFESII 414
N+ F S++
Sbjct: 522 NRIFRSVL 529
>gi|422110507|ref|ZP_16380504.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378740|emb|CBX22690.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 590
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 162/428 (37%), Positives = 240/428 (56%), Gaps = 37/428 (8%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AATDFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + + NL T + E K + L +I + +L +
Sbjct: 349 YGKTQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLVQIT--APALGY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTS--SIKHKTIE------KKNIQPICIEYQIMKLLI 352
+ LS+++ + + + L T +K K + K+ + P ++ QI LLI
Sbjct: 407 LLKQRLSELVGIDPDNLAQLLGQETPKRHVKQKNYKLPPISVKQPVMPTLVQRQIRSLLI 466
Query: 353 SYPSLINEINSEDMIIFS---KCSQNY---VKMFFQLIDTIHIFKNDIDHSKFIKYLKKI 406
+ P I+ D + C N +K + T I ++H + Y + I
Sbjct: 467 N-PDWAAYIDLPDYLALDGDFACLANLAETIKNHPSVPATAQI----LEHMRGSPYEETI 521
Query: 407 NKNFESII 414
N+ F S +
Sbjct: 522 NRIFRSAL 529
>gi|124267676|ref|YP_001021680.1| DNA primase [Methylibium petroleiphilum PM1]
gi|124260451|gb|ABM95445.1| putative DNA primase protein [Methylibium petroleiphilum PM1]
Length = 606
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 205/318 (64%), Gaps = 10/318 (3%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A + ++ QL+ S A+N+LK RGL EI RF +GYAP W L VF Y++ LA S
Sbjct: 124 AGEHWRKQLRGSPRAVNYLKGRGLTGEIAARFGMGYAPEGWRGLASVFPRYDD-PLLAES 182
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I + ++ P + KRYDRFR RIMFPI++ G++IGFGGR++ D+ E KY+NS
Sbjct: 183 GLV----IVQGDEGP---EQKRYDRFRDRIMFPIRSVQGEVIGFGGRVL-DAGEPKYLNS 234
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+F K ELYGL EA+ A+ + GY L+ EGYMDV+ L+Q GF VA LGTACT+ H
Sbjct: 235 PETPVFVKGRELYGLHEARQALRERGYALVVEGYMDVVALAQLGFPNAVATLGTACTAEH 294
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
+ K+L +T+ I+FSFDGD AGRRAA RALE L +A+D + +KFLFLP ++DPDS++R
Sbjct: 295 VHKLLRFTDRIVFSFDGDAAGRRAAGRALEAALPHASDTRSMKFLFLPAEHDPDSFVRAH 354
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F V +A+ L + LE +L + + + N + L+ +P +LR +++
Sbjct: 355 GTAAFEACVEQAVPLSRQLLEVAREGCDLDSAEGRARMLANAKPLWSALP-DGALRRQLL 413
Query: 304 SSLSKIIKVSFNEINNLF 321
L++ + E+ L+
Sbjct: 414 GELARAGALESAELQALW 431
>gi|313668078|ref|YP_004048362.1| DNA primase [Neisseria lactamica 020-06]
gi|313005540|emb|CBN86976.1| DNA primase [Neisseria lactamica 020-06]
Length = 590
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 145/354 (40%), Positives = 217/354 (61%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + + NL T + E K + L +I + +L +
Sbjct: 349 YGKTQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLAQIT--APALGY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKQHVKQKNYKLPPISVKQPVMPTLV 457
>gi|260222949|emb|CBA33027.1| DNA primase [Curvibacter putative symbiont of Hydra magnipapillata]
Length = 669
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 143/324 (44%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A D YK LK S AI + K RGL+ E+ +F LGYAP W L +F +Y + L S
Sbjct: 123 ACDAYKRGLKESPRAIEYFKGRGLSGEVAKQFGLGYAPEGWRNLASIFPEYTD-PLLVES 181
Query: 64 GLVV-DKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
GLV+ + N ++ KRYDRFR R+MFPI+N G+ IGFGGR++ D + KY+N
Sbjct: 182 GLVILHEAENGADE-------KRYDRFRDRVMFPIRNIKGECIGFGGRVLGD-EKPKYLN 233
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETP+F K ELYGLFEA++++ + GYVL+TEGYMDV+ L+Q GF VA LGTACT+
Sbjct: 234 SPETPVFSKGRELYGLFEARSSLREHGYVLVTEGYMDVVALAQLGFPNAVATLGTACTND 293
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H++K+ +T++++FSFDGD AGRRAAR+AL+ L +A+D + IKFLFLP ++DPDS+IR
Sbjct: 294 HVQKLFRFTDAVVFSFDGDAAGRRAARKALDGALPFASDVRSIKFLFLPAEHDPDSFIRA 353
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
+G + F+ V +A L +F +E +L T + + N + L+ +P +L+ ++
Sbjct: 354 YGKEAFADYVAKATPLSRFLVESAQDACDLSTAEGRARMASNAKPLWNQLP-DGALKLQL 412
Query: 303 ISSLSKIIKVSFNEINNLFKINTS 326
+S +++++++ E+ L+ T+
Sbjct: 413 LSEIAQLVQLGSTELGTLWAHGTA 436
>gi|114330326|ref|YP_746548.1| DNA primase [Nitrosomonas eutropha C91]
gi|114307340|gb|ABI58583.1| DNA primase [Nitrosomonas eutropha C91]
Length = 597
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 224/373 (60%), Gaps = 27/373 (7%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDY---NNI 57
M A+ FY++QLK S+ AI +LK RG++ + L F +GYAP+ W L ++F DY ++
Sbjct: 131 MEQAAKFYRVQLKQSELAIAYLKDRGVSGQTALHFGIGYAPSGWQNLAEIFTDYPSGDSS 190
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L SGL+V E K YDRFR RIMFPI + +IIGFGGR + D +E
Sbjct: 191 HALVRSGLIVAH-----------ESKKNYDRFRHRIMFPILDLKKRIIGFGGRAL-DGSE 238
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELY L A AI KSG V++ EGYMDV+ L Q G VA LGT
Sbjct: 239 PKYLNSPETPLFIKGRELYNLVSAGPAIRKSGRVVVVEGYMDVVMLVQHGIENVVATLGT 298
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A TSTHI+K+L YT+ ++F FDGD+AG +AA RALE L D K IKFLFLPDK DPD
Sbjct: 299 ATTSTHIQKLLRYTDEVVFCFDGDEAGTKAAWRALETSLPQLKDGKDIKFLFLPDKEDPD 358
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQ-FFLEEIILNYNLKTIKDIEKSKYNIEYLFKII--PL 294
SYIRK+G F K +LE LL FF +E+ NL T + + E L I P+
Sbjct: 359 SYIRKYGKDAF-KNLLEKAQLLSVFFCKELSSRVNLSTSEGRARLVQQAEPLLVQINAPI 417
Query: 295 SSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIE--YQIMKLL 351
F ++ +S++ V N++ K + +I + N+ +P+ + +++++L
Sbjct: 418 ---FGFMLMKRISELAGVDQNQLIAFLKPGKKN--QPSISRSNVSRPLSVTPYRRLIQIL 472
Query: 352 ISYPSLINEINSE 364
+ P+ +++++++
Sbjct: 473 LHTPAYVDKLDTD 485
>gi|218768517|ref|YP_002343029.1| DNA primase [Neisseria meningitidis Z2491]
gi|433480066|ref|ZP_20437353.1| DNA primase [Neisseria meningitidis 63041]
gi|433513845|ref|ZP_20470633.1| DNA primase [Neisseria meningitidis 63049]
gi|433519237|ref|ZP_20475960.1| DNA primase [Neisseria meningitidis 65014]
gi|9910820|sp|P57028.1|PRIM_NEIMA RecName: Full=DNA primase
gi|121052525|emb|CAM08864.1| DNA primase [Neisseria meningitidis Z2491]
gi|432215026|gb|ELK70917.1| DNA primase [Neisseria meningitidis 63041]
gi|432246492|gb|ELL01939.1| DNA primase [Neisseria meningitidis 63049]
gi|432256165|gb|ELL11489.1| DNA primase [Neisseria meningitidis 65014]
Length = 590
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 216/354 (61%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLTQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|393757578|ref|ZP_10346402.1| DNA primase [Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|393165270|gb|EJC65319.1| DNA primase [Alcaligenes faecalis subsp. faecalis NCIB 8687]
Length = 665
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 131/269 (48%), Positives = 175/269 (65%), Gaps = 13/269 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A Y QLK S AI++LK+RGL+ E RF LG+ E L+ VF Y + L S
Sbjct: 124 AQGHYLRQLKQSPIAIDYLKRRGLDGETAARFGLGWTGTERRGLSAVFPQYED-KQLVES 182
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV++ E +RYDRFR RIMFPI++T G IIGFGGRLI + E KY+NS
Sbjct: 183 GLVIES-----------EDGRRYDRFRSRIMFPIRSTKGHIIGFGGRLI-EKGEPKYLNS 230
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET LF K +ELYGL+E + I K G+VLI EGYMDV+ LSQ G VA LGTA T H
Sbjct: 231 PETTLFSKGHELYGLWEGRQGIRKEGFVLIVEGYMDVVALSQHGLHNAVATLGTATTEHH 290
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I K++ ++ ++F FDGD+AGR+AA RAL CL DD I+F+FL D +DPDS++R+F
Sbjct: 291 ITKLMRASDRLVFCFDGDRAGRKAAWRALTTCLPLVRDDVSIRFMFLADNHDPDSFVREF 350
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
G + F ++ +A +L +FFL+E+ ++ +
Sbjct: 351 GAEAFREQAQQAAALSRFFLDELAAHHRM 379
>gi|241765987|ref|ZP_04763910.1| DNA primase [Acidovorax delafieldii 2AN]
gi|241364036|gb|EER59280.1| DNA primase [Acidovorax delafieldii 2AN]
Length = 443
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 139/318 (43%), Positives = 210/318 (66%), Gaps = 12/318 (3%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+ Y+ L+ S A+ + K RG++ + R+ LGYAP W +L VF Y++ L S
Sbjct: 125 AAHAYRQHLRASTRAVAYFKGRGVSGAVAKRYGLGYAPEGWRSLASVFAHYDD-PLLEES 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I+++ + KRYDRFR R+MFPI+N G+ IGFGGR++ D ++ KY+NS
Sbjct: 184 GLV---IVSEEDGG------KRYDRFRDRVMFPIRNVKGECIGFGGRVLGD-DKPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGLFEA+ AI + GY L+TEGYMDV+ L+Q GF VA LGTACT H
Sbjct: 234 PETPVFHKGRELYGLFEARTAIREQGYALVTEGYMDVVALAQLGFPNAVATLGTACTPEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+L +T++++FSFDGD AGRRAAR+AL+ L +A+D + IKFLFLP ++DPDS++R
Sbjct: 294 VQKLLRFTDAVVFSFDGDAAGRRAARKALDGALPHASDTRSIKFLFLPPEHDPDSFVRAQ 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F++ + +A+ L +F +E +L T + N L+ +P LR +++
Sbjct: 354 GTDAFARCIGDAVPLSRFLVEAASEGCDLGTAEGRAHMASNARPLWSALP-EGVLRRQVL 412
Query: 304 SSLSKIIKVSFNEINNLF 321
S L+++ ++ +++ +L+
Sbjct: 413 SDLAQLAQLDAHDLADLW 430
>gi|385338352|ref|YP_005892225.1| DNA primase [Neisseria meningitidis WUE 2594]
gi|433475944|ref|ZP_20433281.1| DNA primase [Neisseria meningitidis 88050]
gi|433516087|ref|ZP_20472853.1| DNA primase [Neisseria meningitidis 2004090]
gi|433517918|ref|ZP_20474661.1| DNA primase [Neisseria meningitidis 96023]
gi|433524579|ref|ZP_20481237.1| DNA primase [Neisseria meningitidis 97020]
gi|433528595|ref|ZP_20485203.1| DNA primase [Neisseria meningitidis NM3652]
gi|433530802|ref|ZP_20487386.1| DNA primase [Neisseria meningitidis NM3642]
gi|433533068|ref|ZP_20489628.1| DNA primase [Neisseria meningitidis 2007056]
gi|433534833|ref|ZP_20491369.1| DNA primase [Neisseria meningitidis 2001212]
gi|319410766|emb|CBY91150.1| DNA primase [Neisseria meningitidis WUE 2594]
gi|432209053|gb|ELK65024.1| DNA primase [Neisseria meningitidis 88050]
gi|432252413|gb|ELL07769.1| DNA primase [Neisseria meningitidis 2004090]
gi|432252662|gb|ELL08014.1| DNA primase [Neisseria meningitidis 96023]
gi|432258806|gb|ELL14087.1| DNA primase [Neisseria meningitidis 97020]
gi|432264274|gb|ELL19478.1| DNA primase [Neisseria meningitidis NM3652]
gi|432265612|gb|ELL20804.1| DNA primase [Neisseria meningitidis NM3642]
gi|432265811|gb|ELL21002.1| DNA primase [Neisseria meningitidis 2007056]
gi|432270583|gb|ELL25719.1| DNA primase [Neisseria meningitidis 2001212]
Length = 590
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/354 (40%), Positives = 216/354 (61%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQIIGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQIIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLTDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|349610019|ref|ZP_08889381.1| DNA primase [Neisseria sp. GT4A_CT1]
gi|348610789|gb|EGY60471.1| DNA primase [Neisseria sp. GT4A_CT1]
Length = 590
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 217/354 (61%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + + NL T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++K+ + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKSYKLPPISVKQPVMLTLV 457
>gi|261363709|ref|ZP_05976592.1| DNA primase [Neisseria mucosa ATCC 25996]
gi|288568269|gb|EFC89829.1| DNA primase [Neisseria mucosa ATCC 25996]
Length = 590
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/354 (40%), Positives = 217/354 (61%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + + NL T + E K + L +I + +L +
Sbjct: 349 YGKTQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++K+ + PI ++ IM L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKSYKLPPISVKQPIMLTLV 457
>gi|340363133|ref|ZP_08685483.1| DNA primase [Neisseria macacae ATCC 33926]
gi|339886618|gb|EGQ76260.1| DNA primase [Neisseria macacae ATCC 33926]
Length = 590
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 217/354 (61%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + + NL T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++K+ + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKSYKLPPISVKQPVMLTLV 457
>gi|15677389|ref|NP_274544.1| DNA primase [Neisseria meningitidis MC58]
gi|385852858|ref|YP_005899372.1| DNA primase [Neisseria meningitidis H44/76]
gi|416195945|ref|ZP_11617951.1| DNA primase [Neisseria meningitidis CU385]
gi|427826099|ref|ZP_18993160.1| DNA primase [Neisseria meningitidis H44/76]
gi|433465519|ref|ZP_20422998.1| DNA primase [Neisseria meningitidis NM422]
gi|433487870|ref|ZP_20445039.1| DNA primase [Neisseria meningitidis M13255]
gi|433490906|ref|ZP_20448025.1| DNA primase [Neisseria meningitidis NM418]
gi|433505300|ref|ZP_20462238.1| DNA primase [Neisseria meningitidis 9506]
gi|433507531|ref|ZP_20464436.1| DNA primase [Neisseria meningitidis 9757]
gi|9910821|sp|P57029.1|PRIM_NEIMB RecName: Full=DNA primase
gi|7226782|gb|AAF41892.1| DNA primase [Neisseria meningitidis MC58]
gi|316985996|gb|EFV64933.1| DNA primase [Neisseria meningitidis H44/76]
gi|325140675|gb|EGC63191.1| DNA primase [Neisseria meningitidis CU385]
gi|325199862|gb|ADY95317.1| DNA primase [Neisseria meningitidis H44/76]
gi|432202174|gb|ELK58239.1| DNA primase [Neisseria meningitidis NM422]
gi|432224901|gb|ELK80663.1| DNA primase [Neisseria meningitidis M13255]
gi|432226672|gb|ELK82398.1| DNA primase [Neisseria meningitidis NM418]
gi|432240548|gb|ELK96083.1| DNA primase [Neisseria meningitidis 9757]
gi|432240592|gb|ELK96126.1| DNA primase [Neisseria meningitidis 9506]
Length = 590
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 216/354 (61%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLTQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMLTLV 457
>gi|421563729|ref|ZP_16009545.1| DNA primase [Neisseria meningitidis NM2795]
gi|421907286|ref|ZP_16337168.1| DNA primase [Neisseria meningitidis alpha704]
gi|433541382|ref|ZP_20497830.1| DNA primase [Neisseria meningitidis 63006]
gi|393291625|emb|CCI73156.1| DNA primase [Neisseria meningitidis alpha704]
gi|402340214|gb|EJU75417.1| DNA primase [Neisseria meningitidis NM2795]
gi|432276923|gb|ELL31977.1| DNA primase [Neisseria meningitidis 63006]
Length = 590
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 216/354 (61%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L +RGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDRRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|163856345|ref|YP_001630643.1| DNA primase [Bordetella petrii DSM 12804]
gi|163260073|emb|CAP42374.1| DNA primase [Bordetella petrii]
Length = 682
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 142/319 (44%), Positives = 200/319 (62%), Gaps = 14/319 (4%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A Y QL+ S AI +LK+RGL EI F LG++ + + L KVF +Y++ TL
Sbjct: 123 AAQAHYLRQLRASPAAIQYLKQRGLTGEIAAHFGLGWSGTDRHGLAKVFDNYDD-PTLVE 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GLV++ E +RYDRFR R+MFPI+N G +IGFGGR+I E KY+N
Sbjct: 182 AGLVIES-----------EDGRRYDRFRERVMFPIRNARGSLIGFGGRIIG-KGEPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETPLF K ELYGL+EA+ AI + G V++ EGYMDV+GL+Q G VA LGTA T
Sbjct: 230 SPETPLFSKGQELYGLWEARQAIRQEGQVIVVEGYMDVVGLAQQGIANAVATLGTATTPD 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+KK+L ++ ++FSFDGD AGRRAA RAL+ CL DD I+FLFLP ++DPDSY+R+
Sbjct: 290 HVKKLLRSSDRVVFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAEHDPDSYVRE 349
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F + EAM+L +F LEE+ +NL + + + L IP +LR +I
Sbjct: 350 LGAEAFRACLGEAMALSRFLLEELASRHNLAEAEGRASCLHEAKPLLAAIP-ECALRLQI 408
Query: 303 ISSLSKIIKVSFNEINNLF 321
+++ ++++ E+ +
Sbjct: 409 EREMARQVQLTPEEMAQIL 427
>gi|433537477|ref|ZP_20493972.1| DNA primase [Neisseria meningitidis 77221]
gi|432271242|gb|ELL26368.1| DNA primase [Neisseria meningitidis 77221]
Length = 590
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLHEGRAAVKEAGRILVVEGYMDVVALAQFGIGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|261377613|ref|ZP_05982186.1| DNA primase [Neisseria cinerea ATCC 14685]
gi|269146366|gb|EEZ72784.1| DNA primase [Neisseria cinerea ATCC 14685]
Length = 584
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 217/354 (61%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I+ + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPTAKAYLDKRGLSAEVIVHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + NL T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGINLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++K+ + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLARLLGQEAPKRHVKQKSYKLPPISVKQPVMLTLV 457
>gi|241760553|ref|ZP_04758646.1| DNA primase [Neisseria flavescens SK114]
gi|241319057|gb|EER55559.1| DNA primase [Neisseria flavescens SK114]
Length = 590
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 168/452 (37%), Positives = 253/452 (55%), Gaps = 36/452 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + K YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGKHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDS+IR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSHIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + NL T + E K + L +I + +L +
Sbjct: 349 YGKTQFEDALLNQSKPLSEYFWEHLSDGLNLNTQEGKAELVKTSSPLLAQIT--APALGY 406
Query: 301 KIISSLSKIIKVSFNEINNLF--KINTSSIKHKTIEKKNI---QPIC---IEYQIMKLLI 352
+ LS+++ + + + L + +K K+ + I QP ++ QI LLI
Sbjct: 407 LLKQKLSELVGIDPDNLAQLLGQEAPKRHVKQKSYKLPPISVKQPTMLTLVQRQIRSLLI 466
Query: 353 SYPSLINEINSEDMIIFS---KCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKN 409
+ P+ + I+ D + S C N + + DT +++ + Y + +N+
Sbjct: 467 N-PAWASYIDLPDYLALSGDFACLANLAET-IKHHDTTPATAQVLEYMRGSPYEETVNQI 524
Query: 410 FESIIVKIQ---DNFE--YSIEIAKKTLLDAI 436
F S + + DN E S +I K LL+ +
Sbjct: 525 FLSTLHSEEMEGDNEEDCESFQIGMKKLLNEL 556
>gi|254805302|ref|YP_003083523.1| DNA primase [Neisseria meningitidis alpha14]
gi|304387053|ref|ZP_07369305.1| DNA primase [Neisseria meningitidis ATCC 13091]
gi|254668844|emb|CBA06897.1| DNA primase [Neisseria meningitidis alpha14]
gi|304338852|gb|EFM04954.1| DNA primase [Neisseria meningitidis ATCC 13091]
Length = 590
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 216/354 (61%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|433501252|ref|ZP_20458236.1| DNA primase [Neisseria meningitidis NM174]
gi|432235058|gb|ELK90677.1| DNA primase [Neisseria meningitidis NM174]
Length = 590
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPTAKAYLDKRGLGAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMLTLV 457
>gi|217969611|ref|YP_002354845.1| DNA primase [Thauera sp. MZ1T]
gi|217506938|gb|ACK53949.1| DNA primase [Thauera sp. MZ1T]
Length = 631
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 144/336 (42%), Positives = 205/336 (61%), Gaps = 24/336 (7%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+ FY+ QLK S++AI++LK+RGL+ E+ RF LGYAP+EW AL K F DY TL
Sbjct: 116 MAVAARFYRDQLKPSRQAIDYLKRRGLSGEVAARFGLGYAPDEWQALEKAFPDYQ-AKTL 174
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
A +GLV+D E+ +RYDRFR RI+FPI + G+II FGGR++ D E KY
Sbjct: 175 ADAGLVIDN-----------EQGRRYDRFRNRIIFPIHDRRGRIIAFGGRVL-DKGEPKY 222
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K ELYGLF A+ AI +G+ ++ EGYMDV+ L+QF VA LGTA T
Sbjct: 223 LNSPETPLFEKGRELYGLFLAQKAIRDAGFAVVVEGYMDVVALAQFAIENAVATLGTATT 282
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
HI +L T+ I+F FDGD AGRRAA RALE L DD + FLFLP ++DPDS++
Sbjct: 283 PQHIHTLLRQTDRIVFCFDGDAAGRRAAWRALENALESLRDDATLAFLFLPAEHDPDSFV 342
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL-----S 295
R G + F K L A L F ++E+ + L + ++ ++ + PL +
Sbjct: 343 RAEGTEAFRKAALAATPLGSFLIQELSGRHPL------DSAEGRAAFVHEAAPLVTRIAA 396
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHK 331
L+ +++ ++++ ++ E+ F+ +S +
Sbjct: 397 PLLKLQVVKAVAESAGMTQGEVEYAFEQLAASAPRR 432
>gi|319638162|ref|ZP_07992925.1| DNA primase [Neisseria mucosa C102]
gi|317400435|gb|EFV81093.1| DNA primase [Neisseria mucosa C102]
Length = 590
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 153/378 (40%), Positives = 223/378 (58%), Gaps = 27/378 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + K YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGKHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGIGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDGAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRT 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + NL T + E K + L +I + +L +
Sbjct: 349 YGKTQFEDALLNQSKPLSEYFWEHLSDGLNLNTQEGKAELVKTSSPLLAQIT--APALGY 406
Query: 301 KIISSLSKIIKVSFNEINNLF--KINTSSIKHKTIEKKNI---QPIC---IEYQIMKLLI 352
+ LS+++ + + + L + +K K+ + I QP ++ QI LLI
Sbjct: 407 LLKQKLSELVGIDPDNLAQLLGQEAPKRHVKQKSYKLPPISVKQPTMLTLVQRQIRSLLI 466
Query: 353 SYPSLINEINSEDMIIFS 370
+ P+ + I+ D + S
Sbjct: 467 N-PAWASYIDLPDYLALS 483
>gi|421555181|ref|ZP_16001118.1| DNA primase [Neisseria meningitidis 98008]
gi|402331460|gb|EJU66797.1| DNA primase [Neisseria meningitidis 98008]
Length = 590
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 216/354 (61%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLTQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMLTLV 457
>gi|254000082|ref|YP_003052145.1| DNA primase [Methylovorus glucosetrophus SIP3-4]
gi|253986761|gb|ACT51618.1| DNA primase [Methylovorus glucosetrophus SIP3-4]
Length = 584
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 251/454 (55%), Gaps = 45/454 (9%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLV 66
+Y+ +LK S+ AI +LK RGL+ +I RF +GYAP+ W L +VF DY + + L S GLV
Sbjct: 124 YYRGELKKSQRAIEYLKGRGLSGQIAARFQMGYAPSGWQNLQEVFSDYQD-DVLKSIGLV 182
Query: 67 VDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIK---DSNEAKYINS 123
++ E+ +RYDRFR R+MFPI + GQ+IGFGGR++ + + KY+NS
Sbjct: 183 IEN-----------EQGRRYDRFRDRVMFPIHDQKGQVIGFGGRVLGTEGNDDGPKYLNS 231
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETPLF K ELYGLF A+ AI +G VL+ EGYMDV+ L+Q+G VA LGTA T H
Sbjct: 232 PETPLFQKGQELYGLFLARRAIRDAGRVLVVEGYMDVVALAQYGIEYAVAALGTATTPVH 291
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I K++ T+ I+F FDGD AGR+AA RA L TD + FLFLP ++DPDSY+R++
Sbjct: 292 ITKLMRQTDEIVFCFDGDAAGRKAAWRAAMNALPALTDGLRLSFLFLPAEHDPDSYVREY 351
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F + A+ L Q+ ++ + + L++ +D + +L + P+ + ++ +
Sbjct: 352 GKEAFEAAMQTALPLSQYLIQHLSEDNGLQSQED------KVRFLNEAEPILAQIQAPRL 405
Query: 304 SSL-----SKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+ L +++ +S E+ ++ ++ ++ ++ + ++ + + +++ P+L+
Sbjct: 406 ALLLRKRVAELAGLSDEEMRSMIRLPEVQRPRRSQPRQTRSTLSLQRRFVLMVLMQPALV 465
Query: 359 NEIN--------SEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNF 410
+ + ED ++ + + +N +D ++ +
Sbjct: 466 SPDDLAWVLHESEEDALVKHALEAAVAYPSAKPAGLLLQLQNRVD--------ARLMREL 517
Query: 411 ESIIVKIQDNFEYSIEI--AKKTLLDAIYKDRKS 442
E I + + +YS+E A+K L D +Y +R+
Sbjct: 518 EREIHLLDEQVDYSLEFEGARKQLRD-MYAERQG 550
>gi|313202041|ref|YP_004040699.1| DNA primase [Methylovorus sp. MP688]
gi|312441357|gb|ADQ85463.1| DNA primase [Methylovorus sp. MP688]
Length = 584
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 251/454 (55%), Gaps = 45/454 (9%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLV 66
+Y+ +LK S+ AI +LK RGL+ +I RF +GYAP+ W L +VF DY + + L S GLV
Sbjct: 124 YYRGELKKSQRAIEYLKGRGLSGQIAARFQMGYAPSGWQNLQEVFSDYQD-DVLKSIGLV 182
Query: 67 VDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIK---DSNEAKYINS 123
++ E+ +RYDRFR R+MFPI + GQ+IGFGGR++ + + KY+NS
Sbjct: 183 IEN-----------EQGRRYDRFRDRVMFPIHDQKGQVIGFGGRVLGTEGNDDGPKYLNS 231
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETPLF K ELYGLF A+ AI +G VL+ EGYMDV+ L+Q+G VA LGTA T H
Sbjct: 232 PETPLFQKGQELYGLFLARRAIRDAGRVLVVEGYMDVVALAQYGIEYAVAALGTATTPVH 291
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I K++ T+ I+F FDGD AGR+AA RA L TD + FLFLP ++DPDSY+R++
Sbjct: 292 ITKLMRQTDEIVFCFDGDAAGRKAAWRAAMNALPALTDGLRLSFLFLPAEHDPDSYVREY 351
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F + A+ L Q+ ++ + + L++ +D + +L + P+ + ++ +
Sbjct: 352 GKEAFEAAMQTALPLSQYLIQHLSEDNGLQSQED------KVRFLNEAEPILAQIQAPRL 405
Query: 304 SSL-----SKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+ L +++ +S E+ ++ ++ ++ ++ + ++ + + +++ P+L+
Sbjct: 406 ALLLRKRVAELAGLSDEEMRSMIRLPEVQRPRRSQPRQTRSTLSLQRRFVLMVLMQPALV 465
Query: 359 NEIN--------SEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNF 410
+ + ED ++ + + +N +D ++ +
Sbjct: 466 SPDDLAWVLHESEEDALVKHALEAAVAYPSAKPAGLLLQLQNRVD--------ARLMREL 517
Query: 411 ESIIVKIQDNFEYSIEI--AKKTLLDAIYKDRKS 442
E I + + +YS+E A+K L D +Y +R+
Sbjct: 518 EREIHLLDEQVDYSLEFEGARKQLRD-MYAERQG 550
>gi|254672480|emb|CBA05944.1| DNA primase [Neisseria meningitidis alpha275]
Length = 590
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 144/351 (41%), Positives = 215/351 (61%), Gaps = 23/351 (6%)
Query: 6 DFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGL 65
DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L +G+
Sbjct: 126 DFYAQQLKFNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVDTGM 184
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPE 125
V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+NSP+
Sbjct: 185 VIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLNSPD 231
Query: 126 TPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIK 185
TPLF+K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+ H+K
Sbjct: 232 TPLFNKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAEHVK 291
Query: 186 KILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGY 245
++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR +G
Sbjct: 292 ILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAYGK 351
Query: 246 KIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRFKII 303
F +L ++ L ++F E + NL T + E K + L +I + +L + +
Sbjct: 352 AQFEDALLNQSKPLSEYFWEHLSDGINLNTQEGKAELVKTSSPLLAQIT--APALAYLLK 409
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 410 QRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|419796873|ref|ZP_14322389.1| DNA primase [Neisseria sicca VK64]
gi|385699064|gb|EIG29385.1| DNA primase [Neisseria sicca VK64]
Length = 557
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 217/354 (61%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 90 AAADFYAQQLKFNLAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 148
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 149 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 195
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 196 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 255
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 256 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 315
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + + NL T + E K + L +I + +L +
Sbjct: 316 YGKAQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLAQIT--APALAY 373
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++K+ + PI ++ +M L+
Sbjct: 374 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKSYKLPPISVKQPVMLTLV 424
>gi|375106202|ref|ZP_09752463.1| DNA primase, catalytic core [Burkholderiales bacterium JOSHI_001]
gi|374666933|gb|EHR71718.1| DNA primase, catalytic core [Burkholderiales bacterium JOSHI_001]
Length = 631
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 204/318 (64%), Gaps = 7/318 (2%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A D ++ QLK + A+ +LKKRGL EI RF +GYAP W L VF Y++ LA +
Sbjct: 124 AGDHWRAQLKATPRAVAYLKKRGLTGEIAARFGMGYAPEGWRGLASVFPKYDD-PLLAEA 182
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I K + + KRYDRFR RIMFPI++ G +IGFGGR++ D+ E KY+NS
Sbjct: 183 GLV----IVKDEEGDEGAEQKRYDRFRDRIMFPIRSVKGDVIGFGGRVL-DAGEPKYLNS 237
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+F K ELYGL+EA+ A+ GY L+ EGYMDV+ L+Q GF VA LGTACT+ H
Sbjct: 238 PETPVFVKGRELYGLYEARQALRTKGYALVVEGYMDVVALAQSGFANAVATLGTACTADH 297
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
+ K+ +T++++FSFDGD AGRRAA RALE L +A D + I+FLFLP ++DPDS++R+
Sbjct: 298 VAKLFRFTDAVVFSFDGDAAGRRAAGRALEASLPHAGDTRSIRFLFLPPEHDPDSFVREN 357
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F + V A+ L + L+ +L T + + LF ++P + LR +I+
Sbjct: 358 GPEAFDQAVAGALPLSRMLLQTAGEGADLATPEGRARLLAQAGPLFALLP-AGLLREQIL 416
Query: 304 SSLSKIIKVSFNEINNLF 321
+ L++ + +++ L+
Sbjct: 417 AELAQAGGLGAEQLSRLW 434
>gi|433473916|ref|ZP_20431275.1| DNA primase [Neisseria meningitidis 97021]
gi|433482426|ref|ZP_20439684.1| DNA primase [Neisseria meningitidis 2006087]
gi|433484939|ref|ZP_20442153.1| DNA primase [Neisseria meningitidis 2002038]
gi|433486734|ref|ZP_20443926.1| DNA primase [Neisseria meningitidis 97014]
gi|432208845|gb|ELK64817.1| DNA primase [Neisseria meningitidis 97021]
gi|432215146|gb|ELK71036.1| DNA primase [Neisseria meningitidis 2006087]
gi|432219176|gb|ELK75024.1| DNA primase [Neisseria meningitidis 2002038]
gi|432221253|gb|ELK77066.1| DNA primase [Neisseria meningitidis 97014]
Length = 590
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLTQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A+++ G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEVGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|240014314|ref|ZP_04721227.1| DNA primase [Neisseria gonorrhoeae DGI18]
gi|240016749|ref|ZP_04723289.1| DNA primase [Neisseria gonorrhoeae FA6140]
gi|240121877|ref|ZP_04734839.1| DNA primase [Neisseria gonorrhoeae PID24-1]
Length = 620
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 153 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 211
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 212 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 258
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++ +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 259 SPDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVGYGVAALGTATTAE 318
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 319 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 378
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 379 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQIT--APALAY 436
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 437 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 487
>gi|385335518|ref|YP_005889465.1| DNA primase [Neisseria gonorrhoeae TCDC-NG08107]
gi|317164061|gb|ADV07602.1| DNA primase [Neisseria gonorrhoeae TCDC-NG08107]
Length = 620
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 153 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 211
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 212 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 258
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++ +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 259 SPDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVGYGVAALGTATTAE 318
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 319 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 378
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 379 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQIT--APALAY 436
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 437 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 487
>gi|421544852|ref|ZP_15990924.1| DNA primase [Neisseria meningitidis NM140]
gi|421546937|ref|ZP_15992978.1| DNA primase [Neisseria meningitidis NM183]
gi|421549187|ref|ZP_15995205.1| DNA primase [Neisseria meningitidis NM2781]
gi|421553117|ref|ZP_15999085.1| DNA primase [Neisseria meningitidis NM576]
gi|402322413|gb|EJU57875.1| DNA primase [Neisseria meningitidis NM183]
gi|402322645|gb|EJU58097.1| DNA primase [Neisseria meningitidis NM140]
gi|402324577|gb|EJU60009.1| DNA primase [Neisseria meningitidis NM2781]
gi|402329027|gb|EJU64390.1| DNA primase [Neisseria meningitidis NM576]
Length = 590
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 144/351 (41%), Positives = 214/351 (60%), Gaps = 23/351 (6%)
Query: 6 DFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGL 65
DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L +G+
Sbjct: 126 DFYAQQLKFNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVDTGM 184
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPE 125
V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+NSP+
Sbjct: 185 VIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLNSPD 231
Query: 126 TPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIK 185
TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+ H+K
Sbjct: 232 TPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAEHVK 291
Query: 186 KILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGY 245
++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR +G
Sbjct: 292 ILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAYGK 351
Query: 246 KIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRFKII 303
F +L ++ L ++F E + NL T + E K + L +I + +L + +
Sbjct: 352 AQFEDALLNQSKPLSEYFWEHLSDGINLNTQEGKAELVKTSSPLLAQIT--APALAYLLK 409
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 410 QRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|225076459|ref|ZP_03719658.1| hypothetical protein NEIFLAOT_01505 [Neisseria flavescens
NRL30031/H210]
gi|224952138|gb|EEG33347.1| hypothetical protein NEIFLAOT_01505 [Neisseria flavescens
NRL30031/H210]
Length = 590
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 168/452 (37%), Positives = 252/452 (55%), Gaps = 36/452 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLHEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + NL T + E K + L +I + +L +
Sbjct: 349 YGKTQFEDALLNQSKPLSEYFWEHLSDGLNLNTQEGKAELIKTSSPLLAQIT--APALGY 406
Query: 301 KIISSLSKIIKVSFNEINNLF--KINTSSIKHKTIEKKNI---QPIC---IEYQIMKLLI 352
+ LS+++ + + + L + +K K+ + I QP ++ QI LLI
Sbjct: 407 LLKQKLSELVGIDPDNLAQLLGQEAPKRHVKQKSYKLPPISVKQPTMLTLVQRQIRSLLI 466
Query: 353 SYPSLINEINSEDMIIFS---KCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKN 409
+ P+ + I+ D + S C N + + DT +++ + Y + +N+
Sbjct: 467 N-PAWASYIDLPDYLALSGDFACLANLAET-IKHHDTTPATAQVLEYMRGSPYEETVNQI 524
Query: 410 FESIIVKIQ---DNFE--YSIEIAKKTLLDAI 436
F S + + DN E S +I K LL+ +
Sbjct: 525 FLSTLHSEEMEGDNEEDCESFQIGMKKLLNEL 556
>gi|421538488|ref|ZP_15984664.1| DNA primase [Neisseria meningitidis 93003]
gi|402316515|gb|EJU52060.1| DNA primase [Neisseria meningitidis 93003]
Length = 590
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A+++ G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEVGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMLTLV 457
>gi|385328828|ref|YP_005883131.1| DNA primase [Neisseria meningitidis alpha710]
gi|433469719|ref|ZP_20427134.1| DNA primase [Neisseria meningitidis 98080]
gi|308389680|gb|ADO32000.1| DNA primase [Neisseria meningitidis alpha710]
gi|432202486|gb|ELK58549.1| DNA primase [Neisseria meningitidis 98080]
Length = 590
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A+++ G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEVGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|194098358|ref|YP_002001416.1| DNA primase [Neisseria gonorrhoeae NCCP11945]
gi|193933648|gb|ACF29472.1| DNA primase [Neisseria gonorrhoeae NCCP11945]
Length = 620
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 143/353 (40%), Positives = 215/353 (60%), Gaps = 23/353 (6%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L +
Sbjct: 154 AADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVDT 212
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+NS
Sbjct: 213 GMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLNS 259
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
P+TPLF K LYGL+E + A++++ +L+ EGYMDV+ L+QFG VA LGTA T+ H
Sbjct: 260 PDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVGYGVAALGTATTAEH 319
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR +
Sbjct: 320 VKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAY 379
Query: 244 GYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRFK 301
G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 380 GKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQIT--APALAYL 437
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 438 LKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 487
>gi|385341568|ref|YP_005895439.1| DNA primase [Neisseria meningitidis M01-240149]
gi|385857585|ref|YP_005904097.1| DNA primase [Neisseria meningitidis NZ-05/33]
gi|325201774|gb|ADY97228.1| DNA primase [Neisseria meningitidis M01-240149]
gi|325208474|gb|ADZ03926.1| DNA primase [Neisseria meningitidis NZ-05/33]
Length = 590
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 144/353 (40%), Positives = 215/353 (60%), Gaps = 23/353 (6%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L +
Sbjct: 124 AADFYAQQLKFNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVDT 182
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+NS
Sbjct: 183 GMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLNS 229
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
P+TPLF K LYGL+E + A+++ G +L+ EGYMDV+ L+QFG VA LGTA T+ H
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEVGRILVVEGYMDVVALAQFGVGYGVAALGTATTAEH 289
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR +
Sbjct: 290 VKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAY 349
Query: 244 GYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRFK 301
G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 350 GKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAYL 407
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 408 LKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|161870398|ref|YP_001599570.1| DNA primase [Neisseria meningitidis 053442]
gi|161595951|gb|ABX73611.1| DNA primase [Neisseria meningitidis 053442]
Length = 557
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QL+ + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 90 AAADFYAQQLRFNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 148
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 149 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 195
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A+++ G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 196 SPDTPLFDKGKNLYGLYEGRAAVKEVGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 255
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 256 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 315
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 316 YGKAQFEDALLNQSKPLSEYFWEHLTDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 373
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 374 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 424
>gi|297539658|ref|YP_003675427.1| DNA primase [Methylotenera versatilis 301]
gi|297259005|gb|ADI30850.1| DNA primase [Methylotenera versatilis 301]
Length = 578
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 148/413 (35%), Positives = 236/413 (57%), Gaps = 22/413 (5%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+ +YK +LK S AI +LK RGL+ ++ +F +GYAP W L VF +Y+N L+ +
Sbjct: 119 AAQYYKAELKKSPRAIEYLKARGLSGQVAAKFQVGYAPAGWQNLQSVFPNYDN-EALSVA 177
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLVV+ ++ +RYDRFR RIMFPI + GQ+IGFGGR+I + KY NS
Sbjct: 178 GLVVEN-----------DQGRRYDRFRDRIMFPIHDQKGQVIGFGGRVINPEDTPKYYNS 226
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETPLF K +ELYGLF A+ AI +G L+ EGYMDV+ L+Q+G VA LGTA T H
Sbjct: 227 PETPLFQKGHELYGLFLARRAIRDAGRALVVEGYMDVVALAQYGIEYAVAALGTATTPFH 286
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I K++ T+ ++F FDGD AG AA RA L TD + FLFLP +DPDSY+R+F
Sbjct: 287 ITKLMRQTDEVVFCFDGDNAGLTAAWRAAMNALPALTDGLKLSFLFLPKAHDPDSYVREF 346
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F ++ AM L Q+ L+ + + L++ +D + E + + I S + +
Sbjct: 347 GKEQFEAEIKTAMPLSQYILKHLSEDNPLQSQEDKVRFLNEAEPIMQQINAPRSAMY-LR 405
Query: 304 SSLSKIIKVSFNEINNLFKI-NTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEIN 362
++++ ++S +E+ +L K+ N + + K + + +I P+L+++
Sbjct: 406 KKVAELAQLSIDEMQSLLKLPNLNKAPAQARPKLTRTTNSLHHHFCLTMIMQPALVDK-- 463
Query: 363 SEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIV 415
+D++ + S + + + Q I+T + HSK + ++++ ++ I+
Sbjct: 464 -DDLLWIAGSSDDEL-LLRQTIETCLMHP----HSKPVVIMRELESKVDANII 510
>gi|333374866|ref|ZP_08466699.1| DNA primase [Kingella kingae ATCC 23330]
gi|332974450|gb|EGK11374.1| DNA primase [Kingella kingae ATCC 23330]
Length = 587
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 138/336 (41%), Positives = 206/336 (61%), Gaps = 18/336 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A +FY+ QL +++AI+++KKRGL+ EI + +GYAP+ W L ++F Y + L
Sbjct: 124 AACEFYRQQLPQNQQAIDYVKKRGLSREIAEHYGIGYAPDGWQPLAQIFQPYPSA-PLVD 182
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SG+V+D + K YDRFR R+MFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 183 SGMVLDN------------EGKHYDRFRHRLMFPIRNVSGQVIGFGGRVLDDS-KPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+EA+ AI+ G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 230 SPDTPLFDKGKNLYGLYEARQAIKDVGRILVVEGYMDVVALAQFGVGYAVAALGTATTAD 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
HIK + T+S+ F FDGD AGR+AA RALE L DDK + FLFLP+++DPDS++R+
Sbjct: 290 HIKMLFRQTDSVYFCFDGDAAGRKAAWRALENALPQLKDDKSLNFLFLPEEHDPDSFVRE 349
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
FG F + +L E+ L +F + + N ++ T + + + L I +S+L +
Sbjct: 350 FGKARFEEALLHESKPLSAYFWDALTANLDMHTQEGKAELVNHATPLLNQITQASALAYL 409
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN 337
+ LS + + +NL + + + +E K+
Sbjct: 410 LKQELSAKTGI---DPSNLAYLMGQAAPRRHVEAKS 442
>gi|319762044|ref|YP_004125981.1| DNA primase [Alicycliphilus denitrificans BC]
gi|330826138|ref|YP_004389441.1| DNA primase [Alicycliphilus denitrificans K601]
gi|317116605|gb|ADU99093.1| DNA primase [Alicycliphilus denitrificans BC]
gi|329311510|gb|AEB85925.1| DNA primase [Alicycliphilus denitrificans K601]
Length = 641
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 139/318 (43%), Positives = 206/318 (64%), Gaps = 13/318 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A + ++ L+ S AI + K RG++ ++ R+ LGYAP W L VF +Y++ L S
Sbjct: 126 AGESWRRHLRESPRAIQYFKGRGVSGQVAKRYGLGYAPEGWRNLASVFPEYDS-PLLEES 184
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I+ + + KRYDRFR R+MFPI+N G+ IG+GGR++ D ++ KY+NS
Sbjct: 185 GLV---IVGE-------DDGKRYDRFRDRVMFPIRNVKGECIGYGGRVLGD-DKPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGL+EA+ AI + GYVL+ EGYMDV+ L+Q GF VA LGTACT H
Sbjct: 234 PETPVFHKGRELYGLYEARGAIREMGYVLVAEGYMDVVALAQLGFPNAVATLGTACTPDH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
+ K+ +T+ ++FSFDGD AGRRAAR+AL+ L YA+D + IKFLFLP ++DPDS+IR
Sbjct: 294 VHKLFRFTDVVVFSFDGDAAGRRAARKALDGALPYASDTRSIKFLFLPPEHDPDSFIRAH 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F++ V +AM L +F LE +L T + N L+ +P +L+ +++
Sbjct: 354 GPEAFARHVGDAMPLSRFLLESAREGCDLGTAEGRAHMLANARPLWSQLP-DGALKRQML 412
Query: 304 SSLSKIIKVSFNEINNLF 321
+ L ++ ++ ++ L+
Sbjct: 413 AELGELGQLPAKDLAELW 430
>gi|381400535|ref|ZP_09925485.1| DNA primase [Kingella kingae PYKK081]
gi|380834454|gb|EIC14296.1| DNA primase [Kingella kingae PYKK081]
Length = 587
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 138/336 (41%), Positives = 206/336 (61%), Gaps = 18/336 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A +FY+ QL +++AI+++KKRGL+ EI + +GYAP+ W L ++F Y + L
Sbjct: 124 AACEFYRQQLPQNQQAIDYVKKRGLSREIAEHYGIGYAPDGWQPLAQIFQPYPSA-PLVD 182
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SG+V+D + K YDRFR R+MFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 183 SGMVLDN------------EGKHYDRFRHRLMFPIRNVSGQVIGFGGRVLDDS-KPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+EA+ AI+ G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 230 SPDTPLFDKGKNLYGLYEARQAIKDVGRILVVEGYMDVVALAQFGVGYAVAALGTATTAD 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
HIK + T+S+ F FDGD AGR+AA RALE L DDK + FLFLP+++DPDS++R+
Sbjct: 290 HIKMLFRQTDSVYFCFDGDAAGRKAAWRALENALPQLKDDKSLNFLFLPEEHDPDSFVRE 349
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
FG F + +L E+ L +F + + N ++ T + + + L I +S+L +
Sbjct: 350 FGKARFEEALLHESKPLSAYFWDALTANLDMHTQEGKAELVNHATPLLNQITQASALAYL 409
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN 337
+ LS + + +NL + + + +E K+
Sbjct: 410 LKQELSAKTGI---DPSNLAYLMGQAAPRRHVEAKS 442
>gi|421565837|ref|ZP_16011604.1| DNA primase [Neisseria meningitidis NM3081]
gi|402342575|gb|EJU77734.1| DNA primase [Neisseria meningitidis NM3081]
Length = 590
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 216/354 (61%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++ +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I +S+L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--ASALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|424776088|ref|ZP_18203073.1| DNA primase [Alcaligenes sp. HPC1271]
gi|422888548|gb|EKU30934.1| DNA primase [Alcaligenes sp. HPC1271]
Length = 667
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 131/269 (48%), Positives = 171/269 (63%), Gaps = 13/269 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A Y QLK S AI++LK+RGL+ E RF LG+ E L+ VF Y + L S
Sbjct: 124 AQGHYLRQLKQSPIAIDYLKRRGLDGETAARFGLGWTGTERRGLSAVFPQYED-KQLVES 182
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV++ E +RYDRFR RIMFPI++T G IIGFGGRLI + E KY+NS
Sbjct: 183 GLVIES-----------EDGRRYDRFRSRIMFPIRSTKGHIIGFGGRLI-EKGEPKYLNS 230
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET LF K +ELYGL+E + I K G+VLI EGYMDV+ LSQ G VA LGTA T H
Sbjct: 231 PETTLFSKGHELYGLWEGRQGIRKEGFVLIVEGYMDVVALSQHGLHNAVATLGTATTEYH 290
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I K++ ++ ++F FDGD AGR+AA RAL CL DD I+F+FL D +DPDS++R+
Sbjct: 291 ITKLMRASDRLVFCFDGDGAGRKAAWRALNTCLPLVRDDVSIRFMFLADNHDPDSFVREH 350
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
G F ++ EA +L +FFL+E+ + +
Sbjct: 351 GAAAFREQAQEAAALSRFFLDELAARHRM 379
>gi|59801381|ref|YP_208093.1| DNA primase [Neisseria gonorrhoeae FA 1090]
gi|268603437|ref|ZP_06137604.1| DNA primase [Neisseria gonorrhoeae PID1]
gi|268686385|ref|ZP_06153247.1| DNA primase [Neisseria gonorrhoeae SK-93-1035]
gi|293399242|ref|ZP_06643407.1| DNA primase [Neisseria gonorrhoeae F62]
gi|59718276|gb|AAW89681.1| putative DNA primase [Neisseria gonorrhoeae FA 1090]
gi|268587568|gb|EEZ52244.1| DNA primase [Neisseria gonorrhoeae PID1]
gi|268626669|gb|EEZ59069.1| DNA primase [Neisseria gonorrhoeae SK-93-1035]
gi|291610656|gb|EFF39766.1| DNA primase [Neisseria gonorrhoeae F62]
Length = 590
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++ +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|254493554|ref|ZP_05106725.1| DNA primase [Neisseria gonorrhoeae 1291]
gi|268594614|ref|ZP_06128781.1| DNA primase [Neisseria gonorrhoeae 35/02]
gi|268597060|ref|ZP_06131227.1| DNA primase [Neisseria gonorrhoeae FA19]
gi|268598760|ref|ZP_06132927.1| DNA primase [Neisseria gonorrhoeae MS11]
gi|268601119|ref|ZP_06135286.1| DNA primase [Neisseria gonorrhoeae PID18]
gi|268681917|ref|ZP_06148779.1| DNA primase [Neisseria gonorrhoeae PID332]
gi|268684131|ref|ZP_06150993.1| DNA primase [Neisseria gonorrhoeae SK-92-679]
gi|291044059|ref|ZP_06569775.1| DNA primase [Neisseria gonorrhoeae DGI2]
gi|226512594|gb|EEH61939.1| DNA primase [Neisseria gonorrhoeae 1291]
gi|268548003|gb|EEZ43421.1| DNA primase [Neisseria gonorrhoeae 35/02]
gi|268550848|gb|EEZ45867.1| DNA primase [Neisseria gonorrhoeae FA19]
gi|268582891|gb|EEZ47567.1| DNA primase [Neisseria gonorrhoeae MS11]
gi|268585250|gb|EEZ49926.1| DNA primase [Neisseria gonorrhoeae PID18]
gi|268622201|gb|EEZ54601.1| DNA primase [Neisseria gonorrhoeae PID332]
gi|268624415|gb|EEZ56815.1| DNA primase [Neisseria gonorrhoeae SK-92-679]
gi|291012522|gb|EFE04511.1| DNA primase [Neisseria gonorrhoeae DGI2]
Length = 590
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++ +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|337280115|ref|YP_004619587.1| DNA primase protein DnaG [Ramlibacter tataouinensis TTB310]
gi|334731192|gb|AEG93568.1| Candidate DNA primase protein DnaG [Ramlibacter tataouinensis
TTB310]
Length = 595
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 213/318 (66%), Gaps = 12/318 (3%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A + Y+ LKNS A+ +LK RGL+ + +F LGYAP W +L VF Y++ L +
Sbjct: 125 AGEAYRKHLKNSPRAVAYLKGRGLSGAVAKQFGLGYAPEGWRSLASVFAQYDD-PLLVEA 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV I + + KRYDRFR RIMFPI+N G+ IGFGGR++ D + KY+NS
Sbjct: 184 GLV---ITGEDGED------KRYDRFRDRIMFPIRNVKGECIGFGGRVLGD-EKPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+F K ELYGL+EA+ A+ + GYVL+TEGYMDV+ L+Q GF VA LGTACT+ H
Sbjct: 234 PETPVFSKGRELYGLYEARQALREQGYVLVTEGYMDVVALAQLGFPNAVATLGTACTTDH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+ +T+S++FSFDGD AGRRAARRALE L YATD + ++FLFLP ++DPDSYIR+F
Sbjct: 294 VQKLFRFTDSVVFSFDGDAAGRRAARRALEAALPYATDVRTVRFLFLPPEHDPDSYIREF 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F++ V EA L +F ++ + T + + N + L+ +P +L+ +++
Sbjct: 354 GREAFARCVGEAAPLSRFLVDSAGEGCDQATAEGRARLAANAKPLWSGLP-DGALKRQLL 412
Query: 304 SSLSKIIKVSFNEINNLF 321
+ +++ +++ E+++L+
Sbjct: 413 AEIAEQVQLDAQELSSLW 430
>gi|416169329|ref|ZP_11608162.1| DNA primase [Neisseria meningitidis OX99.30304]
gi|325130609|gb|EGC53354.1| DNA primase [Neisseria meningitidis OX99.30304]
Length = 590
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A+++ G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEVGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMLTLV 457
>gi|421540784|ref|ZP_15986923.1| DNA primase [Neisseria meningitidis 93004]
gi|402317822|gb|EJU53351.1| DNA primase [Neisseria meningitidis 93004]
Length = 590
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A+++ G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEVGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMLTLV 457
>gi|416212637|ref|ZP_11621970.1| DNA primase [Neisseria meningitidis M01-240013]
gi|421542827|ref|ZP_15988932.1| DNA primase [Neisseria meningitidis NM255]
gi|421551144|ref|ZP_15997144.1| DNA primase [Neisseria meningitidis 69166]
gi|433471734|ref|ZP_20429117.1| DNA primase [Neisseria meningitidis 68094]
gi|433477988|ref|ZP_20435305.1| DNA primase [Neisseria meningitidis 70012]
gi|433522253|ref|ZP_20478939.1| DNA primase [Neisseria meningitidis 61103]
gi|433526460|ref|ZP_20483089.1| DNA primase [Neisseria meningitidis 69096]
gi|433539306|ref|ZP_20495780.1| DNA primase [Neisseria meningitidis 70030]
gi|325144807|gb|EGC67097.1| DNA primase [Neisseria meningitidis M01-240013]
gi|402316624|gb|EJU52167.1| DNA primase [Neisseria meningitidis NM255]
gi|402328678|gb|EJU64045.1| DNA primase [Neisseria meningitidis 69166]
gi|432207691|gb|ELK63679.1| DNA primase [Neisseria meningitidis 68094]
gi|432214393|gb|ELK70294.1| DNA primase [Neisseria meningitidis 70012]
gi|432258443|gb|ELL13727.1| DNA primase [Neisseria meningitidis 61103]
gi|432260220|gb|ELL15480.1| DNA primase [Neisseria meningitidis 69096]
gi|432272798|gb|ELL27904.1| DNA primase [Neisseria meningitidis 70030]
Length = 590
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A+++ G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEVGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMLTLV 457
>gi|255066478|ref|ZP_05318333.1| DNA primase [Neisseria sicca ATCC 29256]
gi|255049358|gb|EET44822.1| DNA primase [Neisseria sicca ATCC 29256]
Length = 590
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LG AP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGSAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++ +G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKDAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + + NL T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++K+ + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKSYKLPPISVKQPVMLTLV 457
>gi|416187010|ref|ZP_11614066.1| DNA primase [Neisseria meningitidis M0579]
gi|325136571|gb|EGC59172.1| DNA primase [Neisseria meningitidis M0579]
Length = 590
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++ +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|385850893|ref|YP_005897408.1| DNA primase [Neisseria meningitidis M04-240196]
gi|325205716|gb|ADZ01169.1| DNA primase [Neisseria meningitidis M04-240196]
gi|389605301|emb|CCA44221.1| DNA primase [Neisseria meningitidis alpha522]
Length = 590
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 216/354 (61%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQLYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++ +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I +S+L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--ASALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|416182420|ref|ZP_11612046.1| DNA primase [Neisseria meningitidis M13399]
gi|416191464|ref|ZP_11616090.1| DNA primase [Neisseria meningitidis ES14902]
gi|418288702|ref|ZP_12901152.1| DNA primase [Neisseria meningitidis NM233]
gi|421561579|ref|ZP_16007420.1| DNA primase [Neisseria meningitidis NM2657]
gi|254669784|emb|CBA04067.1| DNA primase [Neisseria meningitidis alpha153]
gi|325134648|gb|EGC57288.1| DNA primase [Neisseria meningitidis M13399]
gi|325138536|gb|EGC61099.1| DNA primase [Neisseria meningitidis ES14902]
gi|372201314|gb|EHP15256.1| DNA primase [Neisseria meningitidis NM233]
gi|402337279|gb|EJU72528.1| DNA primase [Neisseria meningitidis NM2657]
Length = 590
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++ +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|385323832|ref|YP_005878271.1| DNA primase [Neisseria meningitidis 8013]
gi|261392219|emb|CAX49734.1| DNA primase [Neisseria meningitidis 8013]
Length = 590
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++ +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>gi|298369313|ref|ZP_06980631.1| DNA primase [Neisseria sp. oral taxon 014 str. F0314]
gi|298283316|gb|EFI24803.1| DNA primase [Neisseria sp. oral taxon 014 str. F0314]
Length = 591
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 161/431 (37%), Positives = 246/431 (57%), Gaps = 39/431 (9%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
+ A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 121 VAAAADFYAQQLKFNPAAKEYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TAL 179
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SG+V+ N+ K YDRFR RIMFPI++ GQ+IGFGGR++ D+++ KY
Sbjct: 180 VDSGMVI------ANEG------KHYDRFRHRIMFPIRDPRGQVIGFGGRVL-DNSKPKY 226
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSP+TPLF K LYGL+E + AI+ +G +L+ EGYMDV+ LSQFG +VA LGTA T
Sbjct: 227 LNSPDTPLFDKGKNLYGLYEGRAAIKDAGRILVVEGYMDVVALSQFGIGYSVAALGTATT 286
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ H+K ++ T+ I F FDGD AGR+AA RALE L D K + FLFLP+++DPDSY+
Sbjct: 287 AEHVKILMRQTDDIYFCFDGDSAGRKAAWRALENALPQLKDGKSLHFLFLPEEHDPDSYV 346
Query: 241 RKFGYKIFSKKVL-EAMSLLQFFLEEII--LNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
R +G F +L ++ L ++F + + LN N++ K E K + L +I + +
Sbjct: 347 RAYGKAQFEDALLHQSKPLSEYFWDALSDGLNLNMQEGK-AELVKTSSPLLAQIT--APA 403
Query: 298 LRFKIISSLSKIIKVSFNEINNLF--KINTSSIKHKTIEKKNI---QPIC---IEYQIMK 349
L F + LS+++ + + + L + +K K+ + I QP+ ++ QI
Sbjct: 404 LGFLLKQRLSELVGIDPDNLAQLLGQEAPKRHVKQKSYKLPAISVKQPVMLTLVQRQIRS 463
Query: 350 LLISYPSLINEINSEDMIIFS---KCSQNYVKM---FFQLIDTIHIFKNDIDHSKFIKYL 403
LLI+ P+ + I+ + + + C N +M Q + I ++H + Y
Sbjct: 464 LLIN-PAWASYIDLPEYLPLTGDFACLANLAEMIKSHPQPPSSAQI----LEHMRGSPYE 518
Query: 404 KKINKNFESII 414
+N+ F+S +
Sbjct: 519 TALNQIFQSAL 529
>gi|385855572|ref|YP_005902085.1| DNA primase [Neisseria meningitidis M01-240355]
gi|325204513|gb|ADY99966.1| DNA primase [Neisseria meningitidis M01-240355]
Length = 590
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++ +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMLTLV 457
>gi|119899515|ref|YP_934728.1| DNA primase [Azoarcus sp. BH72]
gi|119671928|emb|CAL95842.1| DNA primase [Azoarcus sp. BH72]
Length = 606
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 148/383 (38%), Positives = 227/383 (59%), Gaps = 33/383 (8%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
+ A+ FY+ LK + AI++LK+RGL+ E+ RF +GYAP++W AL KVF DY TL
Sbjct: 116 VAAAARFYRDALKAAPIAIDYLKRRGLSGEVAARFGIGYAPDDWQALQKVFPDYQ-AKTL 174
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
A +GLV+D ++ +RYDRFRGR+MFPI + G+II FGGR++ D E KY
Sbjct: 175 ADAGLVIDN-----------DQGRRYDRFRGRVMFPIHDRRGRIIAFGGRVL-DQGEPKY 222
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K ELYGLF A+ AI +G+ L+ EGYMDV+ L+QFG VA LGTA T
Sbjct: 223 LNSPETPLFEKGRELYGLFLAQKAIRDAGFALVVEGYMDVVALAQFGIENAVATLGTATT 282
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ HI+ +L +T+ ++F FDGD AGRRAARRALE L DD + FLFLP ++DPDS++
Sbjct: 283 THHIQALLRHTDRVVFCFDGDNAGRRAARRALENALDALRDDVTLAFLFLPTEHDPDSFV 342
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R G F + EA L + L+++ + +L T + + ++ L IP + L+
Sbjct: 343 RSEGAAAFRQAAAEATPLARTLLDQLQEDLDLATAEGRARLVHDARPLVTRIP-APLLKL 401
Query: 301 KIISSLSKIIKVSFNEINNLFKI-----NTSSIKHKTIEKKNIQP--------------I 341
++I ++++ +++ E+ + F + TS + + +P
Sbjct: 402 QLIKAVAEASQLTQAEVEHAFGLAGPQAGTSPPRADSPRPGPRRPSGFSRPARGPGRRAP 461
Query: 342 CIEYQIMKLLISYPSLINEINSE 364
+++L++ +P+L + ++
Sbjct: 462 STTATLLRLVVHHPALAARLPAD 484
>gi|350571069|ref|ZP_08939407.1| DNA primase [Neisseria wadsworthii 9715]
gi|349793436|gb|EGZ47270.1| DNA primase [Neisseria wadsworthii 9715]
Length = 592
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 160/440 (36%), Positives = 243/440 (55%), Gaps = 46/440 (10%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
CA DFY+ QLK A ++L++RGLN EII ++LGYAP W L +VF Y N L
Sbjct: 124 CA-DFYRAQLKLYPTAQSYLQQRGLNPEIIEHYSLGYAPEGWQPLAQVFQPYPN-TALID 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SG+V++ + K YDRFR RIMFPI++T QIIGFGGR++ DS + KY+N
Sbjct: 182 SGMVIEN------------EGKHYDRFRHRIMFPIRDTRSQIIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + AI+ +G +L+ EGYMDV+ L+QFG +VA LGT+ TS
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAIKDAGRILVVEGYMDVVALAQFGIGYSVASLGTSTTSE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ T+SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSY+R+
Sbjct: 289 HVKLLMRQTDSIYFCFDGDAAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYVRQ 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
FG F +L ++ L ++ + + +L+T + E K + L +I + +L F
Sbjct: 349 FGKAQFEDALLHQSKPLSEYIWDALTETLDLRTQEGKAELVKTSAPLLAQIN--APALSF 406
Query: 301 KIISSLSKIIKVSFNEINNLF-------KINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
+ LS ++ + + L ++ S K + Q + + ++ L++
Sbjct: 407 LLKQKLSDLVGIDPANLAQLLGQEAPKRQVKQKSYKLPAGTARQPQMATLAQKQIRALLA 466
Query: 354 YPSLINEIN-------SEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKI 406
P I+ + D+ + ++ +K + ++ HIF +H + Y
Sbjct: 467 NPEWAEHIHLPEYLPLTGDLACLANVAET-IKNNPHITNSAHIF----EHMRGGPY---- 517
Query: 407 NKNFESIIVKIQDNFEYSIE 426
E+++ I N EY E
Sbjct: 518 ----ETVLFNIFRNSEYDAE 533
>gi|121635206|ref|YP_975451.1| DNA primase [Neisseria meningitidis FAM18]
gi|416177217|ref|ZP_11609991.1| DNA primase [Neisseria meningitidis M6190]
gi|433492926|ref|ZP_20450015.1| DNA primase [Neisseria meningitidis NM586]
gi|433495051|ref|ZP_20452117.1| DNA primase [Neisseria meningitidis NM762]
gi|433497220|ref|ZP_20454254.1| DNA primase [Neisseria meningitidis M7089]
gi|433499287|ref|ZP_20456294.1| DNA primase [Neisseria meningitidis M7124]
gi|433502275|ref|ZP_20459245.1| DNA primase [Neisseria meningitidis NM126]
gi|120866912|emb|CAM10671.1| DNA primase [Neisseria meningitidis FAM18]
gi|325132680|gb|EGC55364.1| DNA primase [Neisseria meningitidis M6190]
gi|432227221|gb|ELK82932.1| DNA primase [Neisseria meningitidis NM586]
gi|432229439|gb|ELK85127.1| DNA primase [Neisseria meningitidis NM762]
gi|432232933|gb|ELK88568.1| DNA primase [Neisseria meningitidis M7089]
gi|432233714|gb|ELK89340.1| DNA primase [Neisseria meningitidis M7124]
gi|432242949|gb|ELK98464.1| DNA primase [Neisseria meningitidis NM126]
Length = 590
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++ +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMLTLV 457
>gi|421556906|ref|ZP_16002816.1| DNA primase [Neisseria meningitidis 80179]
gi|421559502|ref|ZP_16005375.1| DNA primase [Neisseria meningitidis 92045]
gi|421566892|ref|ZP_16012633.1| DNA primase [Neisseria meningitidis NM3001]
gi|402335301|gb|EJU70567.1| DNA primase [Neisseria meningitidis 92045]
gi|402336160|gb|EJU71422.1| DNA primase [Neisseria meningitidis 80179]
gi|402344835|gb|EJU79968.1| DNA primase [Neisseria meningitidis NM3001]
Length = 590
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++ +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMLTLV 457
>gi|418290973|ref|ZP_12903053.1| DNA primase [Neisseria meningitidis NM220]
gi|372200703|gb|EHP14738.1| DNA primase [Neisseria meningitidis NM220]
Length = 590
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++ +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMLTLV 457
>gi|385340413|ref|YP_005894285.1| DNA primase [Neisseria meningitidis G2136]
gi|416202476|ref|ZP_11619976.1| DNA primase [Neisseria meningitidis 961-5945]
gi|433466576|ref|ZP_20424037.1| DNA primase [Neisseria meningitidis 87255]
gi|433509167|ref|ZP_20466039.1| DNA primase [Neisseria meningitidis 12888]
gi|433511738|ref|ZP_20468558.1| DNA primase [Neisseria meningitidis 4119]
gi|325142723|gb|EGC65101.1| DNA primase [Neisseria meningitidis 961-5945]
gi|325198657|gb|ADY94113.1| DNA primase [Neisseria meningitidis G2136]
gi|432204686|gb|ELK60725.1| DNA primase [Neisseria meningitidis 87255]
gi|432246385|gb|ELL01836.1| DNA primase [Neisseria meningitidis 4119]
gi|432247340|gb|ELL02778.1| DNA primase [Neisseria meningitidis 12888]
Length = 590
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 215/354 (60%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++ +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVDYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMLTLV 457
>gi|349573683|ref|ZP_08885657.1| DNA primase [Neisseria shayeganii 871]
gi|348014737|gb|EGY53607.1| DNA primase [Neisseria shayeganii 871]
Length = 593
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 139/328 (42%), Positives = 199/328 (60%), Gaps = 27/328 (8%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+ FY +L +S A +LK RGL++EII + LGYAP W L + Y ++ L S
Sbjct: 123 AAGFYARELADSSAAQGYLKGRGLSDEIIAHYGLGYAPEGWQPLARQIQPYPSVE-LVES 181
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G+V++K K YDRFR RIMFPI+NT GQ+IGFGGR++ DS + KY+NS
Sbjct: 182 GMVLEK------------DGKHYDRFRHRIMFPIRNTGGQVIGFGGRVLDDS-KPKYLNS 228
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
P+TPLF K LYGL+EA+ AI+ +G +L+ EGYMDV+ L+QFG VA LGTA T+ H
Sbjct: 229 PDTPLFDKGKNLYGLYEARAAIKDAGRILVVEGYMDVVALAQFGIGYCVAALGTATTAEH 288
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
IK ++ T+SI F FDGD+AGR+AA RALE L D K + FLFLP+ +DPDSY+R+F
Sbjct: 289 IKILMRQTDSIYFCFDGDRAGRQAAWRALENALPQLKDGKSLHFLFLPETHDPDSYVREF 348
Query: 244 GYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F +L ++ L +F E + +L T + E + + PL + +
Sbjct: 349 GKQRFEDALLNQSKPLSAYFWEALTEPLDLHT------QEGKAELVKRAAPLLNQITAPA 402
Query: 303 ISSLSKIIKVSFNEINNLFKINTSSIKH 330
++ L K E++ + I+ +++ H
Sbjct: 403 LAFLLK------QELSGMVGIDPANLAH 424
>gi|33602138|ref|NP_889698.1| DNA primase [Bordetella bronchiseptica RB50]
gi|33576576|emb|CAE33654.1| DNA primase [Bordetella bronchiseptica RB50]
Length = 676
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 137/319 (42%), Positives = 201/319 (63%), Gaps = 14/319 (4%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A Y QL+ S +AI +LK+RGL EI F LG++ + + L+ VF +Y + L
Sbjct: 123 AAQAHYLRQLRGSPQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVFDNYED-PVLVE 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GLV++ E +RYDRFR R+MFPI+N G +IGFGGR+I E KY+N
Sbjct: 182 AGLVIES-----------EDGRRYDRFRERVMFPIRNARGSLIGFGGRIIG-KGEPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETPLF K +ELYGL+EA+ AI + G V++ EGYMDV+GL+Q G VA LGT+ T
Sbjct: 230 SPETPLFSKGHELYGLWEARLAIRQEGQVVVVEGYMDVVGLAQQGIANAVATLGTSTTPD 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+KK+L ++ +IFSFDGD AGRRAA RAL+ CL DD I+FLFLP ++DPDSY+R+
Sbjct: 290 HVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAEHDPDSYVRE 349
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F ++ EA++L +F L+E+ + + + + + L IP +LR +I
Sbjct: 350 LGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIP-ECALRVQI 408
Query: 303 ISSLSKIIKVSFNEINNLF 321
L+++++++ E+ +
Sbjct: 409 ERELARLVQLTPEEMAQVL 427
>gi|33597398|ref|NP_885041.1| DNA primase [Bordetella parapertussis 12822]
gi|33573825|emb|CAE38133.1| DNA primase [Bordetella parapertussis]
Length = 683
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 137/319 (42%), Positives = 201/319 (63%), Gaps = 14/319 (4%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A Y QL+ S +AI +LK+RGL EI F LG++ + + L+ VF +Y + L
Sbjct: 123 AAQAHYLRQLRGSPQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVFDNYED-PVLVE 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GLV++ E +RYDRFR R+MFPI+N G +IGFGGR+I E KY+N
Sbjct: 182 AGLVIES-----------EDGRRYDRFRERVMFPIRNARGSLIGFGGRIIG-KGEPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETPLF K +ELYGL+EA+ AI + G V++ EGYMDV+GL+Q G VA LGT+ T
Sbjct: 230 SPETPLFSKGHELYGLWEARLAIRQEGQVVVVEGYMDVVGLAQQGIANAVATLGTSTTPD 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+KK+L ++ +IFSFDGD AGRRAA RAL+ CL DD I+FLFLP ++DPDSY+R+
Sbjct: 290 HVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAEHDPDSYVRE 349
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F ++ EA++L +F L+E+ + + + + + L IP +LR +I
Sbjct: 350 LGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIP-ECALRVQI 408
Query: 303 ISSLSKIIKVSFNEINNLF 321
L+++++++ E+ +
Sbjct: 409 ERELARLVQLTPEEMAQVL 427
>gi|427814237|ref|ZP_18981301.1| DNA primase [Bordetella bronchiseptica 1289]
gi|410565237|emb|CCN22790.1| DNA primase [Bordetella bronchiseptica 1289]
Length = 676
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 137/319 (42%), Positives = 201/319 (63%), Gaps = 14/319 (4%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A Y QL+ S +AI +LK+RGL EI F LG++ + + L+ VF +Y + L
Sbjct: 123 AAQAHYLRQLRGSPQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVFDNYED-PVLVE 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GLV++ E +RYDRFR R+MFPI+N G +IGFGGR+I E KY+N
Sbjct: 182 AGLVIES-----------EDGRRYDRFRERVMFPIRNARGSLIGFGGRIIG-KGEPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETPLF K +ELYGL+EA+ AI + G V++ EGYMDV+GL+Q G VA LGT+ T
Sbjct: 230 SPETPLFSKGHELYGLWEARLAIRQEGQVVVVEGYMDVVGLAQQGIANAVATLGTSTTPD 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+KK+L ++ +IFSFDGD AGRRAA RAL+ CL DD I+FLFLP ++DPDSY+R+
Sbjct: 290 HVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAEHDPDSYVRE 349
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F ++ EA++L +F L+E+ + + + + + L IP +LR +I
Sbjct: 350 LGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIP-ECALRVQI 408
Query: 303 ISSLSKIIKVSFNEINNLF 321
L+++++++ E+ +
Sbjct: 409 ERELARLVQLTPEEMAQVL 427
>gi|410419778|ref|YP_006900227.1| DNA primase [Bordetella bronchiseptica MO149]
gi|427821822|ref|ZP_18988884.1| DNA primase [Bordetella bronchiseptica Bbr77]
gi|408447073|emb|CCJ58745.1| DNA primase [Bordetella bronchiseptica MO149]
gi|410587087|emb|CCN02117.1| DNA primase [Bordetella bronchiseptica Bbr77]
Length = 676
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 137/319 (42%), Positives = 200/319 (62%), Gaps = 14/319 (4%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A Y QL+ S +AI +LK+RGL EI F LG++ + + L+ VF Y + L
Sbjct: 123 AAQAHYLRQLRGSPQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVFDSYED-PVLVE 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GLV++ E +RYDRFR R+MFPI+N G +IGFGGR+I E KY+N
Sbjct: 182 AGLVIES-----------EDGRRYDRFRERVMFPIRNARGSLIGFGGRIIG-KGEPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETPLF K +ELYGL+EA+ AI + G V++ EGYMDV+GL+Q G VA LGT+ T
Sbjct: 230 SPETPLFSKGHELYGLWEARLAIRQEGQVVVVEGYMDVVGLAQQGIANAVATLGTSTTPD 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+KK+L ++ +IFSFDGD AGRRAA RAL+ CL DD I+FLFLP ++DPDSY+R+
Sbjct: 290 HVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAEHDPDSYVRE 349
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F ++ EA++L +F L+E+ + + + + + L IP +LR +I
Sbjct: 350 LGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIP-ECALRVQI 408
Query: 303 ISSLSKIIKVSFNEINNLF 321
L+++++++ E+ +
Sbjct: 409 ERELARLVQLTPEEMAQVL 427
>gi|412338289|ref|YP_006967044.1| DNA primase [Bordetella bronchiseptica 253]
gi|408768123|emb|CCJ52882.1| DNA primase [Bordetella bronchiseptica 253]
Length = 669
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 137/319 (42%), Positives = 202/319 (63%), Gaps = 14/319 (4%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A Y QL+ S +AI +LK+RGL EI F LG++ + + L+ VF +Y++ L
Sbjct: 123 AAQAHYLRQLRASPQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVFDNYDD-PVLVE 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GLV++ E +RYDRFR R+MFPI+N G +IGFGGR+I E KY+N
Sbjct: 182 AGLVIES-----------EDGRRYDRFRERVMFPIRNARGSLIGFGGRIIG-KGEPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETPLF K +ELYGL+EA+ AI + G V++ EGYMDV+GL+Q G VA LGT+ T
Sbjct: 230 SPETPLFSKGHELYGLWEARLAIRQEGQVVVVEGYMDVVGLAQQGIANAVATLGTSTTPD 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+KK+L ++ +IFSFDGD AGRRAA RAL+ CL DD I+FLFLP ++DPDSY+R+
Sbjct: 290 HVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPSEHDPDSYVRE 349
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F ++ EA++L +F L+E+ + + + + + L IP +LR +I
Sbjct: 350 LGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIP-ECALRVQI 408
Query: 303 ISSLSKIIKVSFNEINNLF 321
L+++++++ E+ +
Sbjct: 409 ERELARLVQLTPEEMAQVL 427
>gi|82703178|ref|YP_412744.1| DNA primase [Nitrosospira multiformis ATCC 25196]
gi|82411243|gb|ABB75352.1| DNA primase [Nitrosospira multiformis ATCC 25196]
Length = 592
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 151/398 (37%), Positives = 222/398 (55%), Gaps = 23/398 (5%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFL---DYNNI 57
M A+ FY+ QLK SK AI++LK+RGL RF +GYAP W L+ F D
Sbjct: 128 MKIAARFYREQLKLSKNAIDYLKQRGLTGATAARFGIGYAPAGWQNLHTSFPGQPDNAQK 187
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +GL+V+ K YDRFR RIMFPI N G I+GFGGR++ + E
Sbjct: 188 RLLVQAGLMVEGDGGKC-----------YDRFRDRIMFPIVNLKGMIVGFGGRVL-EKGE 235
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELY LF A+ AI ++G V++ EGYMDV+ LSQ G VA LGT
Sbjct: 236 PKYLNSPETPLFQKGRELYNLFGARRAIREAGKVIVVEGYMDVVALSQHGIEYAVATLGT 295
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T HI+K+L T++I+F FD D AG++AA RALE L D K I FLFLP+ DPD
Sbjct: 296 ATTPYHIQKLLRQTDNIVFCFDADSAGKKAAWRALEDSLAQLADGKSIGFLFLPEGEDPD 355
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SYIR G F K + + + L F E+ +LK+ + K + + L + +
Sbjct: 356 SYIRNHGRSAFEKLLEQTLPLSVFLFRELSARTDLKSSEGRAKLVQDAKPLLARV-AAPG 414
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSS---IKHKTIEKKNIQPICIEYQIMKLLISY 354
L ++ L++I +S E+ + KI + ++ K K + P E+ ++++L+ +
Sbjct: 415 LALMLVKRLAEISGLSERELEGILKIRRVTAFPVREKPSRPKPVSP--YEW-LLQILLYH 471
Query: 355 PSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKN 392
P+ I +++ E ++ + + + V L++ I + +
Sbjct: 472 PAYIQKLDRE-LLAYDQEYEKEVAALAALVEFIDVHPH 508
>gi|91776675|ref|YP_546431.1| DNA primase [Methylobacillus flagellatus KT]
gi|91710662|gb|ABE50590.1| DNA primase [Methylobacillus flagellatus KT]
Length = 576
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/368 (39%), Positives = 219/368 (59%), Gaps = 15/368 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+D+Y+ +LK S AI +LK RGL+ ++ RF +GYAP W L VF DY + L
Sbjct: 116 MQQAADYYRAELKKSPRAIEYLKGRGLSGQVAGRFQIGYAPAGWQNLQAVFADYRH-EVL 174
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE-AK 119
++GLV++ E+ + YDRFR RIMFPI GQ+IGFGGR+++ ++ AK
Sbjct: 175 QTAGLVIEN-----------EQGRCYDRFRDRIMFPIHGQKGQVIGFGGRVLESADAGAK 223
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETPLF K ELYGLF A+ AI ++G L+ EGYMDV+ L+Q+G VA LGTA
Sbjct: 224 YLNSPETPLFQKGQELYGLFLARRAIREAGRALVVEGYMDVVALAQYGIDYAVAALGTAT 283
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T HI K++ T+ I+F FDGD AGR AA RA L D + FLFLP ++DPDSY
Sbjct: 284 TPAHIAKLMRQTDEIVFCFDGDSAGRGAAWRAAMNALPVLKDGLRLSFLFLPAQHDPDSY 343
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
+R+FG + F + +AM L Q+ ++E+ N L++ +D + E + K I + L
Sbjct: 344 VREFGKQAFEDLMAQAMPLSQYLIQELSANNRLQSQEDKVQFLNEAEPILKQI-QAPRLA 402
Query: 300 FKIISSLSKIIKVSFNEINNLFKI-NTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+ ++++ +S +E+ + K+ T+ + ++ K+ + ++ + + I P L+
Sbjct: 403 LLLRKRIAELADISSDEMRRMVKLPETNRQQTRSAPKQARVTMSLQRRFTLMAIMRPHLV 462
Query: 359 NEINSEDM 366
E + + M
Sbjct: 463 QEGDQQWM 470
>gi|404378233|ref|ZP_10983329.1| DNA primase [Simonsiella muelleri ATCC 29453]
gi|294484103|gb|EFG31786.1| DNA primase [Simonsiella muelleri ATCC 29453]
Length = 586
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 140/344 (40%), Positives = 203/344 (59%), Gaps = 30/344 (8%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A +FY QL + +AI++ KRGL +II + +GYAP+ W L ++F Y ++ +L
Sbjct: 124 AACEFYHQQLPLNSQAIDYTNKRGLTSDIITHYGIGYAPDGWQPLAQIFQPYPSV-SLVE 182
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SG+V+D + K YDRFR R+MFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 183 SGMVLDN------------EGKHYDRFRHRLMFPIRNVSGQVIGFGGRVLDDS-KPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+EA+ AI+ +G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 230 SPDTPLFDKGKNLYGLYEARQAIKDAGRILVVEGYMDVVALAQFGVGYAVAALGTATTAE 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
HIK + T+S+ F FDGD AGR+AA RALE L DDK + FLFLP+ +DPDS++R
Sbjct: 290 HIKILFRQTDSVYFCFDGDGAGRKAAWRALENALPQLKDDKSLNFLFLPENHDPDSFVRA 349
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL------S 295
FG K F + +L E+ L +F + + N DI + E + PL +
Sbjct: 350 FGRKRFEEALLHESKPLSVYFWDALTENV------DISHQEGKAELVKSAAPLLNQMTQA 403
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ 339
+L + + LS + + +NL + + + +E K+ Q
Sbjct: 404 PALAYLLKQELSTKTGI---DPSNLAYLMGQAAPRRHVEAKSYQ 444
>gi|269214558|ref|ZP_06158649.1| DNA primase [Neisseria lactamica ATCC 23970]
gi|269209457|gb|EEZ75912.1| DNA primase [Neisseria lactamica ATCC 23970]
Length = 431
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 152/412 (36%), Positives = 232/412 (56%), Gaps = 43/412 (10%)
Query: 22 LKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLVVDKIINKVNQSPVIE 81
+ KRGL+ E+I + LGYAP+ W L +VF Y N L +G+V+D
Sbjct: 1 MDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVDTGMVIDN------------ 47
Query: 82 KYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSNELYGLFEA 141
+ + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+NSP+TPLF K LYGL+E
Sbjct: 48 EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLNSPDTPLFDKGKNLYGLYEG 106
Query: 142 KNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNSIIFSFDGD 201
+ A++++G +L+ EGYMDV+ L+QFG VA LGTA T+ H+K ++ +SI F FDGD
Sbjct: 107 RAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAEHVKILMRQADSIYFCFDGD 166
Query: 202 QAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKVL-EAMSLLQ 260
AGR+AA RALE L DDK + FLFLP+++DPDSYIR +G F +L ++ L +
Sbjct: 167 SAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAYGKTQFEDALLNQSKPLSE 226
Query: 261 FFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRFKIISSLSKIIKVSFNEINN 319
+F E + + NL T + E K + L +I + +L + + LS+++ + + +N
Sbjct: 227 YFWEHLSDDLNLNTQEGKAELVKTSSPLLVQIT--APALGYLLKQRLSELVGI---DPDN 281
Query: 320 LFKINTSSIKHKTIEKKN-----------IQPICIEYQIMKLLISYPSLINEINSEDMII 368
L ++ + + +++KN + P ++ QI LLI+ P I+ D +
Sbjct: 282 LAQLLGQEVPKRHVKQKNYKLPPISVKQPVMPTLVQRQIRSLLIN-PDWAAYIDLPDYLA 340
Query: 369 FS---KCSQNY---VKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESII 414
C N +K + T I ++H + Y + IN+ F S +
Sbjct: 341 LDGDFACLANLAETIKNHPSVPATAQI----LEHMRGSPYEETINRIFRSAL 388
>gi|325267619|ref|ZP_08134271.1| DNA primase [Kingella denitrificans ATCC 33394]
gi|324980969|gb|EGC16629.1| DNA primase [Kingella denitrificans ATCC 33394]
Length = 585
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/338 (39%), Positives = 200/338 (59%), Gaps = 18/338 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A FY+ QL S +A ++ RGL+ EII + +GYAP W+ L +VF Y + L
Sbjct: 124 AACTFYEQQLPRSPQAWQYVTGRGLSPEIIAHYGIGYAPEGWSPLAQVFQPYPSA-ALID 182
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SG+V+D + ++YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 183 SGMVLDN------------EGRQYDRFRHRIMFPIRNISGQVIGFGGRVLDDS-KPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL EA+ A++ +G +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 230 SPDTPLFDKGKNLYGLHEARQAVKDAGRILVVEGYMDVVALAQFGVGYAVAALGTSTTAE 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
HIK + T+ + F FDGD AGR+AA RALE L DDK + FLFLP ++DPDS+IR+
Sbjct: 290 HIKLLFRQTDHVYFCFDGDAAGRKAAWRALENALPQLKDDKTLSFLFLPPEHDPDSFIRQ 349
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
+G + F + +L E+ L +F E + T + + + L + I + +L +
Sbjct: 350 YGRQRFEEALLHESKPLSHYFWETLTAGTEPNTQEAKAELVKHAAPLLRQITQAPTLSYL 409
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ 339
+ LS+ + + NNL ++ + + + K+ Q
Sbjct: 410 LRQELSEKTGI---DPNNLAQLMGQAAPQRHVAAKSYQ 444
>gi|452124046|ref|ZP_21936630.1| DNA primase [Bordetella holmesii F627]
gi|452127432|ref|ZP_21940013.1| DNA primase [Bordetella holmesii H558]
gi|451923276|gb|EMD73417.1| DNA primase [Bordetella holmesii F627]
gi|451926712|gb|EMD76842.1| DNA primase [Bordetella holmesii H558]
Length = 682
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/316 (43%), Positives = 204/316 (64%), Gaps = 14/316 (4%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A Y L++S +AI +LK+RGL + F LG+A + + L KVF +Y++ TL
Sbjct: 123 AAQAHYLRLLRSSPDAIAYLKQRGLTGSVAKAFGLGWAGTDRHGLAKVFDNYDD-PTLVE 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GLV++ E +RYDRFR R+MFPI+NT G +IGFGGR+I E KY+N
Sbjct: 182 AGLVIES-----------EDGRRYDRFRERVMFPIRNTRGSLIGFGGRIIG-KGEPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETP+F K +ELYGL+EA+ AI + G V++ EGYMDV+GL+Q G VA LGT+ T
Sbjct: 230 SPETPVFSKGHELYGLWEARLAIRQEGVVIVVEGYMDVVGLAQLGIGNAVATLGTSTTPD 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+KK+L ++ ++FSFDGD AGRRAA RAL+ CL DD I+FLFLP ++DPDSY+R+
Sbjct: 290 HVKKLLRTSDKVVFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAEHDPDSYVRE 349
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
FG + F +++ +A +L +F L+E+ +NL + + + L IP L+ +I
Sbjct: 350 FGAEAFREQMGQASALSRFLLDELASRHNLGEAEGRASCLHEAKPLLAGIP-ECGLKTQI 408
Query: 303 ISSLSKIIKVSFNEIN 318
L+++++++ E++
Sbjct: 409 ERELARLVQLTPEEMS 424
>gi|429743225|ref|ZP_19276802.1| DNA primase [Neisseria sp. oral taxon 020 str. F0370]
gi|429166214|gb|EKY08216.1| DNA primase [Neisseria sp. oral taxon 020 str. F0370]
Length = 589
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 142/371 (38%), Positives = 216/371 (58%), Gaps = 26/371 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK A +L RGL+ EI R+ LGYAP+ W L++VF Y N + L
Sbjct: 123 AAADFYAQQLKLYPAAQQYLDTRGLSAEITARYGLGYAPDGWTPLSQVFQPYPN-SPLVE 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SG+V+ N+ E+ + YDRFR R+MFPI++ GQ+IGFGGR++ DS + KY+N
Sbjct: 182 SGMVIH------NE----EQGRHYDRFRHRVMFPIRDARGQVIGFGGRVLDDS-KPKYLN 230
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 231 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGIGYGVAALGTATTAE 290
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L D K + FLFLP+++DPDSYIR
Sbjct: 291 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDGKSLHFLFLPEEHDPDSYIRA 350
Query: 243 FGYKIFSKK-VLEAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F V ++ L ++F + NL T + E K L +I + +L F
Sbjct: 351 YGKAQFEDALVHQSKPLSEYFWHALSDGLNLSTQEGKAELVKTASPLLAQIT--APALAF 408
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQP---------ICIEYQIMKLL 351
+ +LS+++ + + +L + +H + + P + + Q+++ L
Sbjct: 409 LLKQTLSELVGIDPANLAHLLG-QEAPKRHVKAKSYKLPPPAMSGRPQILTLTQQLIRSL 467
Query: 352 ISYPSLINEIN 362
++ P+ + +
Sbjct: 468 MANPAWVVHVR 478
>gi|408415637|ref|YP_006626344.1| DNA primase [Bordetella pertussis 18323]
gi|401777807|emb|CCJ63148.1| DNA primase (EC 2.7.7.-) [Bordetella pertussis 18323]
Length = 683
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 136/319 (42%), Positives = 200/319 (62%), Gaps = 14/319 (4%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A Y QL+ S +AI +LK+RGL EI F LG++ + + L+ VF +Y + L
Sbjct: 123 AAQAHYLRQLRGSPQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVFDNYED-PVLVE 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GLV++ E +RYDRFR R+MFPI+N G +IGFGGR+I E KY+N
Sbjct: 182 AGLVIES-----------EDGRRYDRFRERVMFPIRNARGSLIGFGGRIIG-KGEPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETPLF K +ELYGL+EA+ AI + G V++ EGYMDV+GL+ G VA LGT+ T
Sbjct: 230 SPETPLFSKGHELYGLWEARLAIRQEGQVVVVEGYMDVVGLALQGIANAVATLGTSTTPD 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+KK+L ++ +IFSFDGD AGRRAA RAL+ CL DD I+FLFLP ++DPDSY+R+
Sbjct: 290 HVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAEHDPDSYVRE 349
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F ++ EA++L +F L+E+ + + + + + L IP +LR +I
Sbjct: 350 LGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIP-ECALRVQI 408
Query: 303 ISSLSKIIKVSFNEINNLF 321
L+++++++ E+ +
Sbjct: 409 ERELARLVQLTPEEMAQVL 427
>gi|33593189|ref|NP_880833.1| DNA primase [Bordetella pertussis Tohama I]
gi|384204486|ref|YP_005590225.1| DNA primase [Bordetella pertussis CS]
gi|33563564|emb|CAE42463.1| DNA primase [Bordetella pertussis Tohama I]
gi|332382600|gb|AEE67447.1| DNA primase [Bordetella pertussis CS]
Length = 676
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 136/319 (42%), Positives = 200/319 (62%), Gaps = 14/319 (4%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A Y QL+ S +AI +LK+RGL EI F LG++ + + L+ VF +Y + L
Sbjct: 123 AAQAHYLRQLRGSPQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVFDNYED-PVLVE 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GLV++ E +RYDRFR R+MFPI+N G +IGFGGR+I E KY+N
Sbjct: 182 AGLVIES-----------EDGRRYDRFRERVMFPIRNARGSLIGFGGRIIG-KGEPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETPLF K +ELYGL+EA+ AI + G V++ EGYMDV+GL+ G VA LGT+ T
Sbjct: 230 SPETPLFSKGHELYGLWEARLAIRQEGQVVVVEGYMDVVGLALQGIANAVATLGTSTTPD 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+KK+L ++ +IFSFDGD AGRRAA RAL+ CL DD I+FLFLP ++DPDSY+R+
Sbjct: 290 HVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAEHDPDSYVRE 349
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F ++ EA++L +F L+E+ + + + + + L IP +LR +I
Sbjct: 350 LGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIP-ECALRVQI 408
Query: 303 ISSLSKIIKVSFNEINNLF 321
L+++++++ E+ +
Sbjct: 409 ERELARLVQLTPEEMAQVL 427
>gi|257092100|ref|YP_003165741.1| DNA primase [Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
gi|257044624|gb|ACV33812.1| DNA primase [Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
Length = 581
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/324 (41%), Positives = 192/324 (59%), Gaps = 14/324 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+ FY QLK S+ A+++LK RG++ EI RF LGYAP W +L F DY + L
Sbjct: 115 MTRAAKFYYEQLKASERAVSYLKTRGVSGEIARRFGLGYAPEGWQSLAGAFDDYESAE-L 173
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ E+ + YDRFR R+MFPI N G++I FGGR++ E KY
Sbjct: 174 QVAGLVIRN-----------EQGRLYDRFRDRVMFPIINQKGEVIAFGGRVL-GQGEPKY 221
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K E++GL +A+ I ++G ++ EGYMDV+ L+Q G TVA LGTA T
Sbjct: 222 LNSPETPLFEKGREVFGLPQARAVIRETGTAIVVEGYMDVVALAQHGVGNTVATLGTATT 281
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
TH+ K+L ++F FDGD AGR+AA RALE L + K I F FLPD DPDS++
Sbjct: 282 PTHVHKLLRQAERLVFCFDGDAAGRKAAWRALENSLETLPEQKSIGFAFLPDGEDPDSFV 341
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+ G + F + ++EAM L F L E+ + +L + + + + L + S LR
Sbjct: 342 RQGGAEAFRRLIVEAMPLSDFLLRELAGHCDLSSAEGRARLVAVAKPLIGRL-QSPLLRL 400
Query: 301 KIISSLSKIIKVSFNEINNLFKIN 324
+++ L+++ S E+ L ++
Sbjct: 401 QVVKRLAQLSDFSQAEVERLCELR 424
>gi|284799937|ref|ZP_06390437.1| DNA primase [Neisseria subflava NJ9703]
gi|284796405|gb|EFC51752.1| DNA primase [Neisseria subflava NJ9703]
Length = 459
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 161/437 (36%), Positives = 243/437 (55%), Gaps = 36/437 (8%)
Query: 18 AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLVVDKIINKVNQS 77
A +L KRGL+ E+I + LGYAP+ W L +VF Y N L +G+V+D
Sbjct: 7 AKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPN-TALVDTGMVIDN-------- 57
Query: 78 PVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSNELYG 137
+ K YDRFR R+MFPI+N GQ+IGFGGR++ DS + KY+NSP+TPLF K LYG
Sbjct: 58 ----EGKHYDRFRHRVMFPIRNPRGQVIGFGGRVLDDS-KPKYLNSPDTPLFDKGKNLYG 112
Query: 138 LFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNSIIFS 197
L+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+ H+K ++ +SI F
Sbjct: 113 LYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAEHVKILMRQADSIYFC 172
Query: 198 FDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKVL-EAM 256
FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR +G F +L ++
Sbjct: 173 FDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAYGKAQFEDALLNQSK 232
Query: 257 SLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRFKIISSLSKIIKVSFN 315
L ++F E + NL T + E K + L +I + +L + + LS+++ + +
Sbjct: 233 PLSEYFWEHLSDGLNLNTQEGKAELVKTSSPLLAQIT--APALGYLLKQKLSELVGIDPD 290
Query: 316 EINNLF--KINTSSIKHKTIEKKNI---QPIC---IEYQIMKLLISYPSLINEINSEDMI 367
+ L + +K K+ + I QP ++ QI LLI+ P+ + I+ D +
Sbjct: 291 NLAQLLGQEAPKRHVKQKSYKLPPISVKQPTMLTLVQRQIRSLLIN-PAWASYIDLPDYL 349
Query: 368 IFS---KCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQ---DNF 421
S C N + + DT ++ + Y + +N+ F S + + DN
Sbjct: 350 ALSGDFACLANLAET-IKHHDTTPATAQVFEYMRGSPYEETVNQIFLSTLHSEEMEGDNE 408
Query: 422 E--YSIEIAKKTLLDAI 436
E S +I K LL+ +
Sbjct: 409 EDCESFQIGMKKLLNEL 425
>gi|329119714|ref|ZP_08248394.1| DNA primase [Neisseria bacilliformis ATCC BAA-1200]
gi|327464163|gb|EGF10468.1| DNA primase [Neisseria bacilliformis ATCC BAA-1200]
Length = 589
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 143/378 (37%), Positives = 215/378 (56%), Gaps = 31/378 (8%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+ FY QLK+S A +L RGL+ EII + LGYAP W L +VF Y + + L
Sbjct: 123 AAASFYAQQLKSSPAAQQYLNTRGLSAEIIAHYGLGYAPEGWQPLAQVFRPYPS-SPLID 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SG+V+ N+ E+ + YDRFR RIMFPI++ GQ+IGFGGR++ DS + KY+N
Sbjct: 182 SGMVIH------NE----EQNRHYDRFRHRIMFPIRDIRGQVIGFGGRVLDDS-KPKYLN 230
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+EA+ AI+ +G +L+ EGYMDV+ LSQFG VA LGTA T+
Sbjct: 231 SPDTPLFDKGKNLYGLYEARAAIKDAGRILVVEGYMDVVALSQFGIGYGVAALGTATTAE 290
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ T+ I F FDGD AGR+AA RALE L D K + FLFLP+++DPDSY+R
Sbjct: 291 HVKILMRQTDDIYFCFDGDAAGRKAAWRALENALPQLKDGKSLHFLFLPEEHDPDSYVRA 350
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL-----SS 296
FG F ++ ++ L ++F + NL T + E + K PL +
Sbjct: 351 FGKAQFEDALIHQSKPLSEYFWYALSDGLNLNT------QEGKAELVKKASPLLAQITAP 404
Query: 297 SLRFKIISSLSKIIKVSFNEINNLF-------KINTSSIKHKTIEKKNIQPICIEYQIMK 349
+L F + L +++ + ++ L ++ S K + ++ + ++++
Sbjct: 405 ALGFLLKQRLGEMVGIDPADLAVLLGQEMPQRRVQAKSYKLPAYTARQMRMPTLAQRLIR 464
Query: 350 LLISYPSLINEINSEDMI 367
L++ P+ + D +
Sbjct: 465 SLMANPAWAAHVELPDYL 482
>gi|56477912|ref|YP_159501.1| DNA primase [Aromatoleum aromaticum EbN1]
gi|56313955|emb|CAI08600.1| DNA primase [Aromatoleum aromaticum EbN1]
Length = 609
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 135/324 (41%), Positives = 200/324 (61%), Gaps = 14/324 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+ Y+ QL+ + AI++LK+RG++ EI RF +GYAP++W L +F DY+ L
Sbjct: 117 MTVAARHYRDQLRQASAAIDYLKRRGVSGEIAARFGIGYAPDDWQGLRSIFPDYD-AKAL 175
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV++ E +RYDRFR RI+FPI++ G++I FGGR++ DS E KY
Sbjct: 176 LEAGLVIEN-----------EAGRRYDRFRNRIVFPIQDRRGRVIAFGGRVL-DSGEPKY 223
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K ELYGL +A+ +I +G+ ++ EGYMDV+ L+Q G +VA LGTA T
Sbjct: 224 LNSPETPLFEKGRELYGLLQAQKSIRDAGHAIVVEGYMDVVALAQHGIGNSVATLGTATT 283
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ HI +L + I+F FDGD AGR+AARRALE L DD + FLFLP+++DPDS++
Sbjct: 284 THHINVLLRQSQRIVFCFDGDAAGRKAARRALESSLEALRDDVTLAFLFLPEQHDPDSFV 343
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R G F + A +L F L E+ N L T + + + + L I + LR
Sbjct: 344 RAHGADAFRQAAGAATTLTNFLLRELQSNCALDTAEGRARLVHEAKPLVTRI-TAPMLRL 402
Query: 301 KIISSLSKIIKVSFNEINNLFKIN 324
+I+ S+++ + S +EI + ++
Sbjct: 403 QIVKSIAEACQFSQSEIERAYGLS 426
>gi|34499218|ref|NP_903433.1| DNA primase [Chromobacterium violaceum ATCC 12472]
gi|34105069|gb|AAQ61425.1| DNA primase [Chromobacterium violaceum ATCC 12472]
Length = 598
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 193/327 (59%), Gaps = 26/327 (7%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M ASDFY+ +LK + A+ + K RGL+ EI RF LGYAP+ W L +Y + + L
Sbjct: 119 MQLASDFYRRELKGAANAVAYCKGRGLSGEIAARFGLGYAPDGWQNLEAAVDNYQD-DKL 177
Query: 61 ASSGLVVDKIINKVNQSPVIE-KYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
+GLV+ V E +RYDRFR R+MFPI+N G I+GFGGR++ E K
Sbjct: 178 VEAGLVI-----------VAEDSGRRYDRFRDRLMFPIRNQRGAIVGFGGRVLG-KGEPK 225
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETPLF K ELYGL+E + AI + VL+ EGYMDV+ L+Q+G VA LGTA
Sbjct: 226 YLNSPETPLFEKGRELYGLYEGRQAIREKNRVLVVEGYMDVVALAQYGIGYAVATLGTAT 285
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T H++K+L + + F FDGD AG++AA RALE L D K + FLFLP ++DPDSY
Sbjct: 286 TGEHVRKLLKHAEQVYFCFDGDAAGQKAAWRALENSLPQLVDGKALNFLFLPTEHDPDSY 345
Query: 240 IRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL---- 294
+R+FG F + + +++ L +F E+ NL T + + + + PL
Sbjct: 346 VREFGADAFEELLTQQSLPLSVYFTRELCRGINLGT------PEGKADLIRQATPLLAQI 399
Query: 295 -SSSLRFKIISSLSKIIKVSFNEINNL 320
+ +L + I L+++ V +E++ L
Sbjct: 400 AAPALGYMIRKRLAEMAGVDVDELDML 426
>gi|225025102|ref|ZP_03714294.1| hypothetical protein EIKCOROL_01994 [Eikenella corrodens ATCC
23834]
gi|224942063|gb|EEG23272.1| hypothetical protein EIKCOROL_01994 [Eikenella corrodens ATCC
23834]
Length = 596
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 133/339 (39%), Positives = 206/339 (60%), Gaps = 30/339 (8%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+ FY +L ++ A +LKKRGL++E+ + LGYAP+ W L + F Y + L +S
Sbjct: 124 AAAFYTRELAANETAKGYLKKRGLSDEVAAHYGLGYAPDSWRPLAQSFAPYPS-EALVNS 182
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G+V++K YDRFR RIMFPI+N+ GQ+IGFGGR++ DS + KY+NS
Sbjct: 183 GMVIEK------------DGSHYDRFRHRIMFPIRNSSGQVIGFGGRVLDDS-KPKYLNS 229
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
P+TPLF K LYGL+EA+ A++++G +L+ EGYMDV+ L+QFG VA LGT+ T+ H
Sbjct: 230 PDTPLFDKGKNLYGLYEARAAVKEAGRILVVEGYMDVVALAQFGIGYCVAALGTSTTAEH 289
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
+K ++ T+SI F FDGD AGR+AA RALE L D K + FLFLP+ +DPDSY+R+
Sbjct: 290 VKILMRQTDSIYFCFDGDAAGRKAAWRALENALPQLKDGKSLHFLFLPEGHDPDSYVREH 349
Query: 244 GYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F +L ++ L +F + + +L++ + E + PL + +
Sbjct: 350 GRERFEDMLLHQSKPLSAYFWDALTAKLDLRS------QEGKAELVKTATPLLTQITAPA 403
Query: 303 ISSLSKIIKVSFNEINNLFKINTSSIKH---KTIEKKNI 338
++ L K E++NL I+ +++ H + + K+++
Sbjct: 404 LAFLLK------QELSNLVGIDPANLAHLMGQEVPKRHV 436
>gi|441505118|ref|ZP_20987108.1| DNA primase [Photobacterium sp. AK15]
gi|441427219|gb|ELR64691.1| DNA primase [Photobacterium sp. AK15]
Length = 584
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 136/391 (34%), Positives = 225/391 (57%), Gaps = 20/391 (5%)
Query: 5 SDFYKIQLKNSKE--AINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
S FYK QL+ + A+++LK RGL+ EI+ ++ +G+ P++W+ + N+ D L
Sbjct: 126 SQFYKSQLRTPEGQVAVDYLKGRGLSGEIVQKYGIGFVPDQWDQVRNRFGRDMEAQQALV 185
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
++G++++ + +RYDRFRGR+MFPI + G++IGFGGR++ D KY+
Sbjct: 186 TAGMLIEN-----------DNGRRYDRFRGRVMFPIHDRRGRVIGFGGRVLGDGT-PKYL 233
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+QFG VA LGT+ T
Sbjct: 234 NSPETPIFHKGRELYGLYEVLQAHREPEKLLVVEGYMDVVALAQFGVDYAVASLGTSTTG 293
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T +++ +DGD+AGR AA RA+E L Y TD + +KF+FLPD DPD+YIR
Sbjct: 294 DHIQTLFRQTGTVVCCYDGDRAGRDAAWRAMEQALPYLTDGRQLKFMFLPDGEDPDTYIR 353
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
++G + F ++V EAM L +F ++ ++ + + K K + L + + +LR
Sbjct: 354 QYGQEGFEQQVNEAMPLSEFMFNTLVAQVDMSSREGKAKLKTLAKPLLEKV-AGETLREY 412
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEI 361
++++L + + ++I K + S + +KNI+ + ++ LL+ PS + +
Sbjct: 413 LLNTLGYNLGLPPDQIRLELKRDDS--QRPVQPQKNIKRTPMR-DVIALLVQNPSFVESL 469
Query: 362 NSEDMIIFSKCSQNYVKMFFQLIDTIHIFKN 392
DM F + + ++D I N
Sbjct: 470 EF-DMAAFEGIDVPGLNLLISVVDKCRINPN 499
>gi|383758557|ref|YP_005437542.1| DNA primase DnaG [Rubrivivax gelatinosus IL144]
gi|381379226|dbj|BAL96043.1| DNA primase DnaG [Rubrivivax gelatinosus IL144]
Length = 587
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 207/340 (60%), Gaps = 5/340 (1%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
++ A+DFY+ QLK S A+ +LK RGL I RF LGYAP W L VF Y++ L
Sbjct: 121 LVRANDFYRGQLKTSPRAVGYLKGRGLTGVIAARFGLGYAPPGWRTLAGVFPRYDD-PLL 179
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV + + + RYD FR R+MFPI+N G++IGFGGR++ DS KY
Sbjct: 180 EEAGLVRHR--EAADGEAEDSERGRYDWFRDRVMFPIRNVAGEVIGFGGRVLDDSK-PKY 236
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
INSPETPLF K ELYGLFEA+ A+ + G ++ EGYMDV+ L+Q G VA LGTACT
Sbjct: 237 INSPETPLFSKGRELYGLFEARQALRERGCAIVVEGYMDVVALAQHGVNNAVATLGTACT 296
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ H++K+ +T++I+FSFDGD AGRRAA RALE L +ATD + +KFLFLP ++DPDSY+
Sbjct: 297 AEHVQKLFRFTDAIVFSFDGDAAGRRAAARALEAALPHATDLRSVKFLFLPPEHDPDSYV 356
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+ G + F + + A+ L + +E+ + +L + + K L+ +P SL+
Sbjct: 357 RELGVEAFEQALAAAVPLSRQLVEQAAEDADLGSAEGRAKLAAQARPLWSALP-EGSLKD 415
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQP 340
+++ +++ ++ ++ + + + E +P
Sbjct: 416 QLLGEIAERARLPREDLARRWGLRSGDAPRAAPEPSEERP 455
>gi|226939394|ref|YP_002794467.1| DnaG [Laribacter hongkongensis HLHK9]
gi|226714320|gb|ACO73458.1| DnaG [Laribacter hongkongensis HLHK9]
Length = 584
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 197/329 (59%), Gaps = 23/329 (6%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M+ A+ FYK +LK S AI++LK+RGL EI RF LG+AP AL VF DY + + L
Sbjct: 119 MLEAARFYKRELKRSTLAIDYLKRRGLTGEIAARFGLGWAPAGRTALQGVFPDYLD-DRL 177
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + + RYDRFR R+MFPI++ G++I FGGR++ D E KY
Sbjct: 178 LEAGLVIRR-----------DDGSRYDRFRERVMFPIRDVRGRVIAFGGRIL-DKGEPKY 225
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K ELYGLFE + AI + VL+ EGYMDV+ L+Q G VA LGT+ T
Sbjct: 226 LNSPETPLFEKGRELYGLFEGREAIRERNRVLVVEGYMDVVALAQHGVPYAVATLGTSTT 285
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
STH+ K+ + + ++F FDGD+AG+RAA RALE L D K + FLFLP ++DPDS++
Sbjct: 286 STHVHKLFRHADRVVFCFDGDKAGQRAAWRALENVLPELRDGKRVDFLFLPVEHDPDSFV 345
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL-----S 295
R++G + + + L +L + L D++ + E L PL +
Sbjct: 346 REYGAEALEDWIQQRSLPLSVYLTQ-----ELAARVDLDSDEGRAELLNLAKPLVMQVKT 400
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKIN 324
+L + L+++ ++S ++++ L+ +
Sbjct: 401 PALAVLLRKKLAELARLSLDDLDRLWGLR 429
>gi|74318405|ref|YP_316145.1| DNA primase [Thiobacillus denitrificans ATCC 25259]
gi|74057900|gb|AAZ98340.1| DNA primase [Thiobacillus denitrificans ATCC 25259]
Length = 565
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 149/410 (36%), Positives = 232/410 (56%), Gaps = 48/410 (11%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+ FYK QLK + AI++LK+RGL+ I R+ +GYAP+ + L +VF DY+ LA+S
Sbjct: 117 AARFYKQQLKQAPHAIDYLKQRGLSGAIAARYGIGYAPDG-SPLKRVFADYD-AEALAAS 174
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLVVD + +RYDRFR RIMFPI+N GQI+GFGGR++ E KY+NS
Sbjct: 175 GLVVDN------------EGRRYDRFRDRIMFPIRNVKGQIVGFGGRVLG-QGEPKYLNS 221
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETPLFHK +E+YGLFEA+ AI+++ V++ EGYMDV+ L+Q G VA LGTA T H
Sbjct: 222 PETPLFHKGSEIYGLFEARAAIKRAARVVVVEGYMDVVALAQHGVEFAVATLGTATTPVH 281
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
+ +L +++ ++++FDGD AGR+AA RALE L D K + FLFLP+ DPDSYIR
Sbjct: 282 ARTLLRHSDRLVYAFDGDAAGRKAAWRALENSLEALQDGKEVSFLFLPEGEDPDSYIRDH 341
Query: 244 GYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKII--PLSSSLRF 300
G F + + E + L F + E+ L T + + + L + I PL + L
Sbjct: 342 GCDAFLRLLDNETLPLSAFLMRELARGRRLDTQEGQATLLKDAKPLLEKIGAPLLARLIQ 401
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTI---EKKNIQPICIEYQIMKLLISYPSL 357
+ I+ L+++ ++ +L + + + + +++ I P + + ++L+ P
Sbjct: 402 RQIAELTQL------QVGDLSAMGLRPVASRPLPPRQQRRIAPSRLR-GLARILLMNPQR 454
Query: 358 INEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKIN 407
+E+ ++F D +H ++ I +L+++
Sbjct: 455 ASEVEP---------------LWFDARDPLHATAGEL-----IAWLREVG 484
>gi|224823887|ref|ZP_03696996.1| DNA primase [Pseudogulbenkiania ferrooxidans 2002]
gi|224604342|gb|EEG10516.1| DNA primase [Pseudogulbenkiania ferrooxidans 2002]
Length = 587
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 161/450 (35%), Positives = 241/450 (53%), Gaps = 43/450 (9%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+ +YK QLK+S AI + K RGL EI RF LGYAP EW L +F DY + L S
Sbjct: 122 AAAYYKQQLKSSPAAIGYFKGRGLTGEIAARFGLGYAPGEWQNLQAIFTDYQD-EKLVES 180
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+ ++ KRYDRFR R+MFPI+N G IIGFGGR++ E KY+NS
Sbjct: 181 GLVI-----------AGDEGKRYDRFRDRVMFPIRNQRGGIIGFGGRVL-GKGEPKYLNS 228
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETPLF K ELYGL+EA+ AI + VL+ EGYMDV+ L+Q+G VA LGTA T H
Sbjct: 229 PETPLFEKGRELYGLYEARQAIREKNRVLVVEGYMDVVALAQYGVEYAVATLGTATTGEH 288
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+L + + + F FDGD+AG++AA RALE L D K + FLFLP ++DPDSYIR+F
Sbjct: 289 VRKLLRHADQVYFCFDGDKAGQKAAWRALENSLPQLVDGKALNFLFLPQEHDPDSYIREF 348
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL-----SSSL 298
G + F ++ LE SL + L L D+ + + + + +PL + +L
Sbjct: 349 GREAF-EECLEQQSLPL----SVYLTRELTGRADMNTPEGKADLIRQAMPLLNQIAAPAL 403
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEK------KNIQPICIEYQIMKLLI 352
I L+++ V +E + L + K + + + I + QI LL+
Sbjct: 404 ALIIKKRLAELAGVDVDEFDMLMGLKKPERKGRREYRLPNESNRYINTPIVRKQIKWLLM 463
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFES 412
+ P ++ D + S + + F L + +H + + ++ ++ ++ FE
Sbjct: 464 N-PRWAEDVTLSDSVALS----DELACFAMLAERVHEMPQEPNTARLVESIR--GTPFEG 516
Query: 413 II-------VKIQDNFEYSIEIAKKTLLDA 435
++ ++ D F + E A++ D
Sbjct: 517 LVDSVLQQAMQDPDEFADTGEEARQQFQDG 546
>gi|347541210|ref|YP_004848636.1| DNA primase [Pseudogulbenkiania sp. NH8B]
gi|345644389|dbj|BAK78222.1| DNA primase [Pseudogulbenkiania sp. NH8B]
Length = 587
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 161/450 (35%), Positives = 241/450 (53%), Gaps = 43/450 (9%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+ +YK QLK+S AI + K RGL EI RF LGYAP EW L +F DY + L S
Sbjct: 122 AAAYYKQQLKSSPAAIGYFKGRGLTGEIAARFGLGYAPGEWQNLQAIFTDYQD-EKLVES 180
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+ ++ KRYDRFR R+MFPI+N G IIGFGGR++ E KY+NS
Sbjct: 181 GLVI-----------AGDEGKRYDRFRDRVMFPIRNQRGGIIGFGGRVL-GKGEPKYLNS 228
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETPLF K ELYGL+EA+ AI + VL+ EGYMDV+ L+Q+G VA LGTA T H
Sbjct: 229 PETPLFEKGRELYGLYEARQAIREKNRVLVVEGYMDVVALAQYGVEYAVATLGTATTGEH 288
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+L + + + F FDGD+AG++AA RALE L D K + FLFLP ++DPDSYIR+F
Sbjct: 289 VRKLLRHADQVYFCFDGDKAGQKAAWRALENSLPQLVDGKALNFLFLPQEHDPDSYIREF 348
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL-----SSSL 298
G + F ++ LE SL + L L D+ + + + + +PL + +L
Sbjct: 349 GREAF-EECLEQQSLPL----SVYLTRELTGRADMNTPEGKADLIRQAMPLLNQIAAPAL 403
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEK------KNIQPICIEYQIMKLLI 352
I L+++ V +E + L + K + + + I + QI LL+
Sbjct: 404 ALIIKKRLAELAGVDVDEFDMLMGLKKPERKGRREYRLPNESNRYINTPIVRKQIKWLLM 463
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFES 412
+ P ++ D + S + + F L + +H + + ++ ++ ++ FE
Sbjct: 464 N-PRWAEDVTLSDSVALS----DELACFAMLAERVHEMPQEPNTARLVESIR--GTPFEG 516
Query: 413 II-------VKIQDNFEYSIEIAKKTLLDA 435
++ ++ D F + E A++ D
Sbjct: 517 LVDSVLQQAMQDPDEFADTGEEARQQFQDG 546
>gi|238022115|ref|ZP_04602541.1| hypothetical protein GCWU000324_02021 [Kingella oralis ATCC 51147]
gi|237866729|gb|EEP67771.1| hypothetical protein GCWU000324_02021 [Kingella oralis ATCC 51147]
Length = 594
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 125/273 (45%), Positives = 175/273 (64%), Gaps = 15/273 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+ FY QL S A + RGL+ EII R+ +GYAP+ W L +VF Y N L +
Sbjct: 124 AAATFYAQQLPLSAAAQAYATGRGLSPEIIARYGIGYAPDGWTPLAQVFQPYPN-GELIA 182
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SG+V+D + K+YDRFR R+MFPI+N G IIGFGGR++ DS + KY+N
Sbjct: 183 SGMVID------------QDGKQYDRFRHRLMFPIRNISGSIIGFGGRVLDDS-KPKYLN 229
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+EA+ AI+ +G +L+ EGYMD + L+Q+G VA LGTA T+
Sbjct: 230 SPDTPLFDKGKNLYGLYEARQAIKDAGRILVVEGYMDTVALAQYGIGYAVAALGTATTAE 289
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
HIK + T++I F FDGD AG++AA RALE L D K + FLFLP ++DPDS++R+
Sbjct: 290 HIKILFRQTDNIYFCFDGDAAGQKAAWRALENALPQLKDGKSLHFLFLPAEHDPDSFVRQ 349
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKT 274
FG + F + +L ++ L Q+F + + +L +
Sbjct: 350 FGKERFEEALLHQSRPLSQYFWDALTAGLDLTS 382
>gi|397661890|ref|YP_006502590.1| DNA primase [Taylorella equigenitalis ATCC 35865]
gi|394350069|gb|AFN35983.1| DNA primase [Taylorella equigenitalis ATCC 35865]
Length = 594
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 147/384 (38%), Positives = 224/384 (58%), Gaps = 29/384 (7%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
++ A ++Y L++SKEA ++ KR LNE+ I +F+LG++ +E+ L F DY++ L
Sbjct: 121 LLQAQEYYVFNLQDSKEAKTYIAKRELNEDSIKKFSLGWSGSEYKNLAHKFPDYDD-KLL 179
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
GLV+ E+ ++ DRFR R+MFPI N +G+ IGFGGR + ++++ KY
Sbjct: 180 MDVGLVLQN-----------EELRKRDRFRNRLMFPILNENGKTIGFGGRTL-NNDQPKY 227
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPET +FHK ELYGLFE K I K L+ EGYMDVI LSQ GF VA LGTA +
Sbjct: 228 LNSPETEVFHKGKELYGLFENKKGIIKEKKALVVEGYMDVIALSQHGFDYAVATLGTATS 287
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
THI+K+ YT++IIF FDGD AGR AA +AL CL + I+FLFLP ++DPDSY+
Sbjct: 288 QTHIQKLYRYTSTIIFCFDGDTAGREAAWKALNECLPILKEGHSIRFLFLPPEHDPDSYV 347
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R +G F ++ + L + L+E+ +NL + ++ L IP S+++
Sbjct: 348 RAYGGTQFKNQIKSSKPLSIYLLDELKTRFNLNEAEGRAGCYSFVKPLIATIP-KSAIKT 406
Query: 301 KIISSLSKIIKVSFNEI-------NNLFKINTSSIKHKTIEKK------NIQPICIEYQI 347
++ +SK++ ++ E + FK S K I+K +++P +EY+
Sbjct: 407 QMEKEVSKLLNLTHEEFLADLGLSDTDFKKADRSYKKTKIKKSTRTSKVSVEP--LEYKF 464
Query: 348 MKLLISYPSLINEINSEDMIIFSK 371
+KLL YP L ++++ + I K
Sbjct: 465 IKLLAMYPYLTQKLSARHIEILKK 488
>gi|54307644|ref|YP_128664.1| DNA primase [Photobacterium profundum SS9]
gi|46912067|emb|CAG18862.1| putative DNA primase [Photobacterium profundum SS9]
Length = 608
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 219/395 (55%), Gaps = 27/395 (6%)
Query: 5 SDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLA 61
S FY+ QL+ + K AI++LK RGL+ E++ +F +GY P++W+ + F D + L
Sbjct: 149 SQFYQSQLRTPDGKTAIDYLKNRGLSGEVVQKFGIGYIPDQWDMVRSRFGRDPESQKALV 208
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
++G++++ + +RYDRFRGR+MFPI + G++IGFGGR++ D KY+
Sbjct: 209 TTGMLIEN-----------DSGRRYDRFRGRVMFPIHDRRGRVIGFGGRVLGDGT-PKYL 256
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+QFG VA LGTA TS
Sbjct: 257 NSPETPIFHKGRELYGLYEVLQAHREPAKLLVVEGYMDVVALAQFGVDYAVASLGTATTS 316
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H++ + T++++ +DGD+AGR AA RA+E L + TD + +KF+FLPD DPDS IR
Sbjct: 317 DHLQTLFRQTSTVVCCYDGDRAGREAAWRAMEQALPFLTDGRQLKFMFLPDGEDPDSCIR 376
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
G F ++ +AM L +F ++L + + + + K L +P +LR
Sbjct: 377 AEGKDAFEERTTQAMPLTEFLFNTLMLQVDTSSKEGMAKLSILAVPLIDKVP-GGTLRLY 435
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMK----LLISYPSL 357
+ L K K+ + L ++ I + IE K I I+ M+ LLI P+
Sbjct: 436 LRELLGK--KLGLPDEAQLQQL----ISKQGIETKKIATPEIKRTPMREAIALLIQKPNF 489
Query: 358 INEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKN 392
+N + E M F + + ++D N
Sbjct: 490 VNSLEFE-MTDFEGIDVPGLNLLLSIVDKCRTNPN 523
>gi|118594359|ref|ZP_01551706.1| DNA primase [Methylophilales bacterium HTCC2181]
gi|118440137|gb|EAV46764.1| DNA primase [Methylophilales bacterium HTCC2181]
Length = 574
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 172/274 (62%), Gaps = 12/274 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+ FY+ L++S +AI +LK RGL + F++G+AP+ W L F Y++ +L
Sbjct: 115 MKIATQFYQKALRSSPKAIEYLKSRGLTGAVAKEFSIGFAPDGWQNLENAFKQYDDA-SL 173
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GL+ EK K YDRFR RIMFPI N GQ+IGFGGR+I + KY
Sbjct: 174 EKAGLIQKN-----------EKGKYYDRFRNRIMFPIINEKGQVIGFGGRVINPDDTPKY 222
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
NSPETPLF KS ELYGL A+ I + GYV++ EGYMDV+ L+Q F VA LGTA T
Sbjct: 223 YNSPETPLFQKSYELYGLIHARKPIREKGYVVVVEGYMDVVALTQHDFRNVVATLGTATT 282
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
HIKK++ YT I+F FDGD+AG+ AA RA+ L TD+ +KFLFLPD +DPDS+I
Sbjct: 283 IYHIKKLMRYTQDIVFCFDGDKAGQTAAWRAMMNALSAVTDNVRLKFLFLPDNHDPDSFI 342
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
R++ + F + +A+ L ++ + + L +L +
Sbjct: 343 REYSKEAFDRLAEDALPLSEYIVRRLTLTNDLSS 376
>gi|30248252|ref|NP_840322.1| CHC2 zinc finger [Nitrosomonas europaea ATCC 19718]
gi|30180137|emb|CAD84139.1| CHC2 zinc finger [Nitrosomonas europaea ATCC 19718]
Length = 600
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 146/373 (39%), Positives = 209/373 (56%), Gaps = 29/373 (7%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDY---NNI 57
M A+ FY+ QLK S +AI +LK+RG++ L F +GYAP W L+ +F DY ++
Sbjct: 134 MEQAAKFYRGQLKQSDQAIAYLKERGISGRTALCFGIGYAPPGWQNLSGIFTDYPADDSS 193
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L +GLVV + K YDRFR RIMFPI + +I+GFGGR + D E
Sbjct: 194 HPLVQAGLVVAH-----------DGKKNYDRFRHRIMFPILDRKKKIVGFGGRAL-DGGE 241
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET LF K ELY L A AI KS V++ EGYMDV+ L Q G VA LGT
Sbjct: 242 PKYLNSPETSLFVKGRELYNLASASPAIRKSARVIVVEGYMDVVMLVQSGVENVVATLGT 301
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ +L +T+ ++F FDGD AG +AA RALE L D K IKFLFLPDK DPD
Sbjct: 302 ATTAMHIQNLLRHTDEVVFCFDGDAAGTKAAWRALETSLPQLKDGKDIKFLFLPDKEDPD 361
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SYIRK+G F + +A L FF E+ NL T S+ + + PL +
Sbjct: 362 SYIRKYGRVAFEGLLEKAQPLSVFFCNELSGRVNLGT------SEGRARLVQRAGPLLAQ 415
Query: 298 LR-----FKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIE--YQIMKL 350
+ F + +S++ V N++ K + + T+ + +P+ + +++++
Sbjct: 416 INAPVFGFMLTKRISELTGVGQNQLAAFLKTGKKN-RSSTLRPEASRPLSVTPYRRLIQI 474
Query: 351 LISYPSLINEINS 363
L+ P N++++
Sbjct: 475 LLHAPDYANKLDT 487
>gi|319779663|ref|YP_004130576.1| DNA primase [Taylorella equigenitalis MCE9]
gi|317109687|gb|ADU92433.1| DNA primase [Taylorella equigenitalis MCE9]
gi|399114900|emb|CCG17696.1| DNA primase [Taylorella equigenitalis 14/56]
Length = 594
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/384 (38%), Positives = 223/384 (58%), Gaps = 29/384 (7%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
++ A ++Y L++SKEA ++ KR LNE+ I +F+LG++ +E+ L F DY++ L
Sbjct: 121 LLQAQEYYVFNLQDSKEAKTYIAKRELNEDSIKKFSLGWSGSEYKNLAHKFPDYDD-KLL 179
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
GLV+ E+ ++ DRFR R+MFPI N +G+ IGFGGR + ++++ KY
Sbjct: 180 MDVGLVLQN-----------EELRKRDRFRNRLMFPILNENGKTIGFGGRTL-NNDQPKY 227
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPET +FHK ELYGLFE K I K L+ EGYMDVI LSQ GF VA LGTA +
Sbjct: 228 LNSPETEVFHKGKELYGLFENKKGIIKEKKALVVEGYMDVIALSQHGFDYAVATLGTATS 287
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
THI+K+ YT++IIF FDGD AGR AA +AL CL + I+FLFLP ++DPDSY+
Sbjct: 288 QTHIQKLYRYTSTIIFCFDGDTAGREAAWKALNECLPILKEGHSIRFLFLPPEHDPDSYV 347
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R +G F ++ + L + L+E+ +NL + ++ L IP S+++
Sbjct: 348 RAYGGTQFKNQIKSSKPLSIYLLDELKTRFNLNEAEGRAGCYSFVKPLIATIP-KSAIKT 406
Query: 301 KIISSLSKIIKVSFNEI-------NNLFKINTSSIKHKTIEKK------NIQPICIEYQI 347
++ +SK++ ++ E + FK K I+K +++P +EY+
Sbjct: 407 QMEKEVSKLLNLTHEEFLADLGLSDTDFKKADRPYKKTKIKKSTRTSKVSVEP--LEYKF 464
Query: 348 MKLLISYPSLINEINSEDMIIFSK 371
+KLL YP L ++++ + I K
Sbjct: 465 IKLLAMYPYLTQKLSARHIEILKK 488
>gi|343506738|ref|ZP_08744208.1| DNA primase [Vibrio ichthyoenteri ATCC 700023]
gi|342801841|gb|EGU37297.1| DNA primase [Vibrio ichthyoenteri ATCC 700023]
Length = 587
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 215/368 (58%), Gaps = 30/368 (8%)
Query: 7 FYKIQLKNSKE--AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDY-NNINTLASS 63
FY+ QLK SK AI++LK RGL+ EI+ +F +GY P+EW+ + K F N+ + L S
Sbjct: 132 FYRDQLKQSKSKIAIDYLKDRGLSGEIVQKFGIGYIPDEWDLVRKNFGQQKNSQDMLVSG 191
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++++ +K RYDRFRGR+MFPI++ G++IGFGGR+I + KY+NS
Sbjct: 192 GMLIEN-----------DKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVIGEGT-PKYLNS 239
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT+ T H
Sbjct: 240 PETPVFHKGKELYGLYEVLQAYREPPRILVVEGYMDVVALAQYGVDYSVASLGTSTTGDH 299
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++ + T+ ++ +DGD+AGR AA RA+E L Y TD + +KF+FLPD DPDSYIR+
Sbjct: 300 LQVLFRQTSLVVCCYDGDRAGREAAWRAMENALPYLTDGRQLKFMFLPDGEDPDSYIRQH 359
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F +++ A SL +F ++ ++ T + + K L +P +LR +
Sbjct: 360 GKQAFEQQLDSATSLSEFMFSSLMQQVDMSTREGMAKLTSLAIPLIDKVP-GGTLRLYLR 418
Query: 304 SSLSKIIKVSFNE-----INNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPS-- 356
L K + + I+ + HK I++ ++ +++ LLI PS
Sbjct: 419 DLLGKRLGLMDERQLQQLISKEGQKEERPQPHKEIKRTPMR------EVIALLIQNPSYA 472
Query: 357 -LINEINS 363
++ E++S
Sbjct: 473 EMVPELSS 480
>gi|386818271|ref|ZP_10105489.1| DNA primase [Thiothrix nivea DSM 5205]
gi|386422847|gb|EIJ36682.1| DNA primase [Thiothrix nivea DSM 5205]
Length = 585
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 144/370 (38%), Positives = 203/370 (54%), Gaps = 20/370 (5%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+ +++ QLK + EA +L++RGL E+I F LGYAP W+AL Y + LAS
Sbjct: 124 AAVWFQSQLKQNPEASKYLQQRGLTAEVIAGFGLGYAPVGWDALGNQLSSYGSEKLLAS- 182
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G+ + K YDRFR RIMFPI++ G++IGFGGR++ D KY+NS
Sbjct: 183 GMSIRNDAGKF-----------YDRFRERIMFPIRDRRGRVIGFGGRVLGDGT-PKYLNS 230
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +ELYGLFEA+ K +L+ EGYMDVI L+QFG VA LGTA T H
Sbjct: 231 PETDIFHKGSELYGLFEARQNTRKLERLLVVEGYMDVIALAQFGVTYAVATLGTATTPEH 290
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+++L ++F FDGD+AGR AA RALE L DDK I+FLFLP DPD+ +RK
Sbjct: 291 IRQLLRLVPEVVFCFDGDRAGRDAAWRALENALPELRDDKEIRFLFLPQGEDPDTQVRKA 350
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F V+ A++L + L + +NL T + + + L +P + LR +I
Sbjct: 351 GRDAFEVAVVSALTLSDYLLAGLKERFNLSTREGKSRLLNDSLKLLANMP-TILLREQIF 409
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKT-----IEKKNIQPICIEYQIMKLLISYPSLI 358
LS + + K NTS T ++++ + + I LL+ P+L
Sbjct: 410 QELSTLTDTPLEVVRRYAKGNTSGAAELTYNVARPADQDMRRTPVRHAIA-LLLHNPALA 468
Query: 359 NEINSEDMII 368
S + I+
Sbjct: 469 ELAGSPEQIL 478
>gi|320157474|ref|YP_004189853.1| DNA primase [Vibrio vulnificus MO6-24/O]
gi|319932786|gb|ADV87650.1| DNA primase [Vibrio vulnificus MO6-24/O]
Length = 587
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/364 (36%), Positives = 209/364 (57%), Gaps = 27/364 (7%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN 58
M S FY+ QLK + K AI++LK RGL+ EI+ +F +GY +EW+ + K F +
Sbjct: 126 MASISQFYRNQLKLSSGKNAIDYLKNRGLSGEIVQKFGIGYIADEWDLVRKNFGQHPEAQ 185
Query: 59 T-LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L + G++++ EK RYDRFRGR+MFPI++ G++IGFGGR++ D
Sbjct: 186 EMLVAGGMLIEN-----------EKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVLGDGT- 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 234 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + T++++ +DGD+AGR AA RA+E L Y D + +KF+FLPD DPD
Sbjct: 294 STTGDHLQVLFRQTSTVVCCYDGDRAGREAAWRAMENALPYLNDGRQLKFMFLPDGEDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SYIR+FG F ++V AM L +F + ++ + + + K L +P +
Sbjct: 354 SYIRQFGKAQFEQQVANAMPLSEFMFSSLAQQVDMSSKEGMAKLTTLAVPLIDKVP-GGT 412
Query: 298 LRFKIISSLSKIIK-VSFNEINNLFKINTSSIK----HKTIEKKNIQPICIEYQIMKLLI 352
LR + L + + V ++ L + K H+ +++ ++ +++ LLI
Sbjct: 413 LRLYLRELLGRRLGLVDERQLQQLIDRQGQTDKKPQPHRELKRTPMR------EVVALLI 466
Query: 353 SYPS 356
PS
Sbjct: 467 QRPS 470
>gi|91227145|ref|ZP_01261629.1| DNA primase [Vibrio alginolyticus 12G01]
gi|269968566|ref|ZP_06182569.1| DNA primase [Vibrio alginolyticus 40B]
gi|451974346|ref|ZP_21926538.1| DNA primase [Vibrio alginolyticus E0666]
gi|91188797|gb|EAS75084.1| DNA primase [Vibrio alginolyticus 12G01]
gi|269826824|gb|EEZ81155.1| DNA primase [Vibrio alginolyticus 40B]
gi|451930742|gb|EMD78444.1| DNA primase [Vibrio alginolyticus E0666]
Length = 588
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 213/369 (57%), Gaps = 27/369 (7%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK SK AI +LK RGL+ EI+ +F +GY +EW+ + K F + N
Sbjct: 127 MGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQNKENQ 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ +K RYDRFRGR+MFPI++ G++IGFGGR++ D
Sbjct: 187 DMLVTGGMLIEN-----------DKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVLGDGT- 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + T++++ +DGD+AGR AA RA+E L Y TD + +KF+FLPD DPD
Sbjct: 295 STTGDHLQVLFRQTSTVVCCYDGDRAGREAAWRAMENALPYLTDGRQLKFMFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SYIR+ G + F ++V AM L +F + ++ T + + K L +P +
Sbjct: 355 SYIRQNGKQAFEQQVSNAMPLSEFMFSSLTQQVDMSTKEGMAKLSTLAVPLIDKVP-GGT 413
Query: 298 LRFKIISSLSKIIK-VSFNEINNLF----KINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
LR + L + + V ++ L K + HK I++ ++ +++ LLI
Sbjct: 414 LRLYLRELLGRRLGLVDERQLQQLISKQGKEDKRPQPHKEIKRTPMR------EVIALLI 467
Query: 353 SYPSLINEI 361
P ++ +
Sbjct: 468 QNPQYVSMV 476
>gi|71906167|ref|YP_283754.1| DNA primase [Dechloromonas aromatica RCB]
gi|71845788|gb|AAZ45284.1| DNA primase [Dechloromonas aromatica RCB]
Length = 578
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/274 (48%), Positives = 178/274 (64%), Gaps = 13/274 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+ +YK QLK S AI + KKRGL EI R+ +GYAP+ W L +VF DYN + L
Sbjct: 117 MARAAAYYKDQLKKSPHAIEYCKKRGLTGEIAARYGIGYAPDGWQNLQEVFPDYN-ADEL 175
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV++ E +RYDRFR R+M PI N G+II FGGR+I D E KY
Sbjct: 176 KIAGLVIEN-----------EAGRRYDRFRDRLMIPIINPKGEIIAFGGRII-DQGEPKY 223
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K EL+GL +A+ A+ ++ ++TEGYMDVI L+Q G VA LGTA T
Sbjct: 224 LNSPETPLFEKGRELFGLPQARQALRETDTAIVTEGYMDVIALAQNGVGNAVATLGTATT 283
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+TH+ K+L + I+F FDGD AGR+AA RALE L D+K + F+FLP ++DPDSYI
Sbjct: 284 ATHVTKLLRQVDRIVFCFDGDNAGRKAAWRALENSLEALADNKRLGFIFLPQEHDPDSYI 343
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
R+FG + F ++V +AM L F L E+ +L +
Sbjct: 344 REFGKEQFDRQVTQAMPLSDFLLRELAQRCDLTS 377
>gi|358636290|dbj|BAL23587.1| DNA primase [Azoarcus sp. KH32C]
Length = 611
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 136/329 (41%), Positives = 204/329 (62%), Gaps = 14/329 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+ FY+ QLK++ AI++LK+RGL EI +RF +G+AP++W+ L ++F +Y L
Sbjct: 117 MTAAARFYRDQLKHAPVAIDYLKRRGLTGEICVRFGIGFAPDDWHGLRRIFPEYER-KAL 175
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV++ + +RYDRFR RIMFPI++ G+II FGGR++ D E KY
Sbjct: 176 LDAGLVIEN-----------DAGRRYDRFRNRIMFPIQDRRGRIIAFGGRVL-DGGEPKY 223
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K ELYGL +A+ AI ++G+ ++ EGYMDV+ L+QFG VA LGTA T
Sbjct: 224 LNSPETPLFEKGRELYGLPQAQKAIREAGHTVVVEGYMDVVALAQFGVGNAVATLGTATT 283
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
HI +L + ++F FDGD AGR+AARRALE L DD + FLFLP+++DPDS++
Sbjct: 284 PHHINTLLRHAQRVVFCFDGDAAGRKAARRALESSLEALRDDVTLAFLFLPEEHDPDSFV 343
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R FG FS+ A L F L E+ + L T + + + + L + + LR
Sbjct: 344 RAFGAAAFSQAAASATPLTTFLLNELRTDCPLDTAEGRARLVHEAKPLVTRV-AAPMLRL 402
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIK 329
++I ++++ + S E+ F + + + +
Sbjct: 403 QLIKAIAEASEFSQAEVETAFGLKSETPR 431
>gi|90411914|ref|ZP_01219922.1| DNA primase [Photobacterium profundum 3TCK]
gi|90327172|gb|EAS43544.1| DNA primase [Photobacterium profundum 3TCK]
Length = 518
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 144/420 (34%), Positives = 232/420 (55%), Gaps = 30/420 (7%)
Query: 5 SDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLA 61
S FY+ QL+ + K AI++LK RGL+ E++ +F +GY P++W+ + F D + L
Sbjct: 59 SQFYQSQLRTPDGKTAIDYLKNRGLSGEVVQKFGIGYIPDQWDMVRSRFGRDPESQKALV 118
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
++G++++ + +RYDRFRGR+MFPI + G++IGFGGR++ D KY+
Sbjct: 119 TTGMLIEN-----------DSGRRYDRFRGRVMFPIHDRRGRVIGFGGRVLGDGT-PKYL 166
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+QFG VA LGTA TS
Sbjct: 167 NSPETPIFHKGRELYGLYEVLQAHREPEKLLVVEGYMDVVALAQFGVDYAVASLGTATTS 226
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H++ + T++++ +DGD+AGR AA RA+E L + TD + +KF+FLPD DPDS IR
Sbjct: 227 DHLQTLFRQTSTVVCCYDGDRAGREAAWRAMEQALPFLTDGRQLKFMFLPDGEDPDSCIR 286
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
G F ++ +AM L +F ++ + + + + K L +P +LR
Sbjct: 287 AEGKDAFEERTNQAMPLTEFIFNTLMRQVDTSSKEGMAKLSILAVPLIDKVP-GGTLRLY 345
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMK----LLISYPSL 357
+ L K K+ + L ++ I + IE K I I+ M+ LLI P+
Sbjct: 346 LRELLGK--KLGLPDEAQLQQL----ISKQGIETKKIAAPEIKRTPMREAIALLIQKPNF 399
Query: 358 INEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKI 417
+N + E M F + + ++D N I + +++ + NK E+++ ++
Sbjct: 400 VNSLEFE-MTDFEGIDVPGLNLLLSIVDKCRTNPN-ITTGQLLEHWRG-NKQ-EAMMARL 455
>gi|172087762|ref|YP_205635.2| DNA primase [Vibrio fischeri ES114]
gi|171902350|gb|AAW86747.2| DNA primase [Vibrio fischeri ES114]
Length = 587
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 220/386 (56%), Gaps = 21/386 (5%)
Query: 5 SDFYKIQLKNSK--EAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
S FY+ QLK++ AIN+LK RGL+ EI+ +F +GY +EW + N D + + L
Sbjct: 130 SQFYRSQLKSAANIHAINYLKDRGLSGEIVQKFGIGYIADEWELVKNNFGRDKASQDALV 189
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
S G++++ + +RYDRFRGR+MFPI++ G++IGFGGR+I + KY+
Sbjct: 190 SGGMLIES-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGRVIGEGT-PKYL 237
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETP+FHK ELYGL+EA A + L+ EGYMDV+ L+Q+G VA LGTA T
Sbjct: 238 NSPETPIFHKGKELYGLYEALQAYKDLPQALVVEGYMDVVALAQYGVDYAVASLGTATTG 297
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H++ + T++++ +DGD+AGR AA RA+E L Y D + +KF+FLPD DPD+YIR
Sbjct: 298 DHMQLLFRPTSTVVCCYDGDRAGREAAWRAMEQALPYLNDGRQLKFMFLPDGEDPDTYIR 357
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
++G + F ++V A SL+ F ++ + T + K L +P +LR
Sbjct: 358 QYGKEAFEQEVANAESLINFMFRTLVDQIDTSTREGKAKLTTLAVPLIDKVP-GGTLRLY 416
Query: 302 IISSLSKIIKV-SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
+ L K + + +++ L +++ K I + I+ + +++ LL+ P L
Sbjct: 417 LREQLGKTLGILDESQLQQLIS-KQGAVEPKRIAQPEIKRTAMR-EVITLLLQNPELAQL 474
Query: 361 INSEDMIIFSKCSQNYVKMFFQLIDT 386
+ D+ + + +F QL+++
Sbjct: 475 V--PDLESVKEIPLPGLSLFLQLLES 498
>gi|27364090|ref|NP_759618.1| DNA primase [Vibrio vulnificus CMCP6]
gi|27360208|gb|AAO09145.1| DNA primase [Vibrio vulnificus CMCP6]
Length = 587
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 134/364 (36%), Positives = 209/364 (57%), Gaps = 27/364 (7%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN 58
M S FY+ QLK + K AI++LK RGL+ EI+ +F +GY +EW+ + K F +
Sbjct: 126 MASISQFYRNQLKLSSGKIAIDYLKNRGLSGEIVQKFGIGYIADEWDLVRKNFGQHPEAQ 185
Query: 59 T-LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L + G++++ EK RYDRFRGR+MFPI++ G++IGFGGR++ D
Sbjct: 186 EMLVAGGMLIEN-----------EKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVLGDGT- 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 234 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + T++++ +DGD+AGR AA RA+E L Y D + +KF+FLPD DPD
Sbjct: 294 STTGDHLQVLFRQTSTVVCCYDGDRAGREAAWRAMENALPYLNDGRQLKFMFLPDGEDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SYIR+FG F ++V AM L +F + ++ + + + K L +P +
Sbjct: 354 SYIRQFGKAQFEQQVANAMPLSEFMFSSLAQQVDMSSKEGMAKLTTLAVPLIDKVP-GGT 412
Query: 298 LRFKIISSLSKIIK-VSFNEINNLFKINTSSIK----HKTIEKKNIQPICIEYQIMKLLI 352
LR + L + + V ++ L + K H+ +++ ++ +++ LLI
Sbjct: 413 LRLYLRELLGRRLGLVDERQLQQLIDRQGQTDKKPQPHRELKRTPMR------EVVALLI 466
Query: 353 SYPS 356
PS
Sbjct: 467 QRPS 470
>gi|319944404|ref|ZP_08018678.1| DNA primase [Lautropia mirabilis ATCC 51599]
gi|319742365|gb|EFV94778.1| DNA primase [Lautropia mirabilis ATCC 51599]
Length = 687
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 136/314 (43%), Positives = 192/314 (61%), Gaps = 14/314 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+ +Y+ +LK + AI++LK+RG+ EI F LGYAP W L V DY + + +
Sbjct: 122 AARYYRSRLKETPAAISYLKERGVTGEIARHFGLGYAPAGWRNLEGVLPDYAAEDAV-RA 180
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+ E KRYDRFR RIMFPI+N GQ+IGFGGR++ E KY+NS
Sbjct: 181 GLVI-----------AGEDGKRYDRFRERIMFPIRNPRGQVIGFGGRVLG-QGEPKYLNS 228
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE PLF K +ELYGLFEA+ I SG VL+ EGYMDV+ L Q G VA LGTA T+ H
Sbjct: 229 PEGPLFSKGHELYGLFEAREGIRTSGRVLVVEGYMDVVMLHQHGCHYAVATLGTATTAMH 288
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
+ K+L + ++FSFDGD AGRRAA RALE L +D K + FLFLP ++DPDS++R
Sbjct: 289 LGKLLRLADRVVFSFDGDAAGRRAAWRALENALPLLSDTKQLDFLFLPPEHDPDSFVRAE 348
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F V +A+ L F L+E+ ++ T + + + ++ L + +P +LR +I+
Sbjct: 349 GLEAFEACVRDALPLSSFLLKELAQRADITTPEGRARMQAELKPLVQQMP-DIALRTQIL 407
Query: 304 SSLSKIIKVSFNEI 317
++ + + E+
Sbjct: 408 VDMAGRLGLPTEEL 421
>gi|323495835|ref|ZP_08100903.1| DNA primase [Vibrio sinaloensis DSM 21326]
gi|323319051|gb|EGA71994.1| DNA primase [Vibrio sinaloensis DSM 21326]
Length = 585
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 147/431 (34%), Positives = 239/431 (55%), Gaps = 29/431 (6%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN 58
M + FY+ QLK +SK AI +LK+RGL+ EI+ +F +GY +EW+ + K F
Sbjct: 126 MGSIAQFYRDQLKQSSSKVAIEYLKERGLSGEIVQKFGIGYVADEWDLVRKNFGQQQQTQ 185
Query: 59 T-LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L S G++++ +K RYDRFRGR+MFPI++ G++IGFGGR+I D
Sbjct: 186 EMLVSGGMLIEN-----------DKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVIGDGT- 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 234 PKYLNSPETPIFHKGKELYGLYEVMQAYREPAKILVVEGYMDVVALAQYGVDYSVASLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 294 STTGDHIQLLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLPDGEDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKS--KYNIEYLFKIIPLS 295
SY+RK+G F +++ +A L + + +I + L + KS + + L IP
Sbjct: 354 SYVRKYGKAAFEEQIEKATPLSSYLFDNLIEIHQLNLGSNEGKSALRAHASALINKIP-- 411
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYP 355
F+ + L K++ N L + S + + K I+ + +++ LLI P
Sbjct: 412 -DPYFQEL--LEKLLDERTGFDNRLRQTRKKSAETRPQPHKEIKRTPMR-EVIALLIQNP 467
Query: 356 SLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIV 415
S + D+ + + + +F ++++ H+ N + + I++ + N + E+++
Sbjct: 468 SYAQMV--PDLSSVRELTVPGLSLFVEVLEYCHMHPN-VTTGQLIEHWR--NSSHEALLS 522
Query: 416 KIQDNFEYSIE 426
++ +E +E
Sbjct: 523 RLA-GWEIPVE 532
>gi|332524403|ref|ZP_08400617.1| DNA primase [Rubrivivax benzoatilyticus JA2]
gi|332107726|gb|EGJ08950.1| DNA primase [Rubrivivax benzoatilyticus JA2]
Length = 451
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 136/334 (40%), Positives = 203/334 (60%), Gaps = 5/334 (1%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
++ A+DFY+ QLK S A+ +LK RGL + RF LGYAP W L VF Y++ L
Sbjct: 121 LVRANDFYRGQLKTSPRAVGYLKARGLTGVVAARFGLGYAPPGWRTLAGVFPRYDD-PLL 179
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV + + + RYD FR R+MFPI+N G++IGFGGR++ DS KY
Sbjct: 180 EEAGLVRHR--EAADGESEDSERGRYDWFRDRVMFPIRNVAGEVIGFGGRVLDDSK-PKY 236
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
INSPETPLF K ELYGLFEA+ A+ + G ++ EGYMDV+ L+Q G VA LGTACT
Sbjct: 237 INSPETPLFSKGRELYGLFEARQALRERGCAIVVEGYMDVVALAQHGVNNAVATLGTACT 296
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ H++K+ +T++I+FSFDGD AGRRAA RALE L +ATD + +KFLFLP ++DPDSY+
Sbjct: 297 AEHVQKLFRFTDAIVFSFDGDAAGRRAAARALEAALPHATDLRSVKFLFLPPEHDPDSYV 356
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+ G + F + + A+ L + +E + +L + + + L+ +P SL+
Sbjct: 357 RELGVEAFEQALAAAVPLSRQLVELAAEDADLSSAEGRARLAAQARPLWSALP-EGSLKD 415
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIE 334
+++ +++ ++ ++ + + E
Sbjct: 416 QLLGEIAERARLPREDLARRWGLRAGEATRPAPE 449
>gi|262392397|ref|YP_003284251.1| DNA primase [Vibrio sp. Ex25]
gi|262335991|gb|ACY49786.1| DNA primase [Vibrio sp. Ex25]
Length = 588
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 213/369 (57%), Gaps = 27/369 (7%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK SK AI +LK RGL+ EI+ +F +GY +EW+ + K F + N
Sbjct: 127 MGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQNKENQ 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ +K RYDRFRGR+MFPI++ G++IGFGGR++ D
Sbjct: 187 DMLVTGGMLIEN-----------DKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVLGDGT- 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + T++++ +DGD+AGR AA RA+E L Y TD + +KF+FLPD DPD
Sbjct: 295 STTGDHLQVLFRQTSTVVCCYDGDRAGREAAWRAMENALPYLTDGRQLKFMFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SYIR+ G + F ++V AM L +F + ++ T + + K L +P +
Sbjct: 355 SYIRQNGKQAFEQQVSNAMPLSEFMFSLLTQQVDMSTKEGMAKLSTLAVPLIDKVP-GGT 413
Query: 298 LRFKIISSLSKIIK-VSFNEINNLF----KINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
LR + L + + V ++ L K + HK I++ ++ +++ LLI
Sbjct: 414 LRLYLRELLGRRLGLVDERQLQQLISKQGKEDKRPQPHKEIKRTPMR------EVIALLI 467
Query: 353 SYPSLINEI 361
P ++ +
Sbjct: 468 QNPQYVSMV 476
>gi|37678746|ref|NP_933355.1| DNA primase [Vibrio vulnificus YJ016]
gi|37197487|dbj|BAC93326.1| DNA primase [Vibrio vulnificus YJ016]
Length = 598
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 134/364 (36%), Positives = 209/364 (57%), Gaps = 27/364 (7%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN 58
M S FY+ QLK + K AI++LK RGL+ EI+ +F +GY +EW+ + K F +
Sbjct: 137 MASISQFYRNQLKLSSGKIAIDYLKNRGLSGEIVQKFGIGYIADEWDLVRKNFGQHPEAQ 196
Query: 59 -TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L + G++++ EK RYDRFRGR+MFPI++ G++IGFGGR++ D
Sbjct: 197 EMLVAGGMLIEN-----------EKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVLGDGT- 244
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 245 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 304
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + T++++ +DGD+AGR AA RA+E L Y D + +KF+FLPD DPD
Sbjct: 305 STTGDHLQVLFRQTSTVVCCYDGDRAGREAAWRAMENALPYLNDGRQLKFMFLPDGEDPD 364
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SYIR+FG F ++V AM L +F + ++ + + + K L +P +
Sbjct: 365 SYIRQFGKAQFEQQVTNAMPLSEFMFSSLAQQVDMSSKEGMAKLTTLAVPLIDKVP-GGT 423
Query: 298 LRFKIISSLSKIIK-VSFNEINNLFKINTSSIK----HKTIEKKNIQPICIEYQIMKLLI 352
LR + L + + V ++ L + K H+ +++ ++ +++ LLI
Sbjct: 424 LRLYLRELLGRRLGLVDERQLQQLIDRQGQTDKKPQPHRELKRTPMR------EVVALLI 477
Query: 353 SYPS 356
PS
Sbjct: 478 QRPS 481
>gi|451823092|ref|YP_007459366.1| DNA primase [Candidatus Kinetoplastibacterium desouzaii TCC079E]
gi|451775892|gb|AGF46933.1| DNA primase [Candidatus Kinetoplastibacterium desouzaii TCC079E]
Length = 608
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 134/266 (50%), Positives = 168/266 (63%), Gaps = 11/266 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A FY L + +A+++LKKRGLN I F +G++ + N L+K F +YN+ N L
Sbjct: 118 MSQAQKFYNGYLFKNLQAVSYLKKRGLNSNYINIFGIGWSGKDNNFLSKCFSNYNDDNLL 177
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
GLVVD E +RYDRFR RIMFPI+N G+I+GFG R I D+ KY
Sbjct: 178 VEIGLVVDA-----------ENGRRYDRFRERIMFPIRNFYGKIVGFGARTIDDNKSPKY 226
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPET LF K ELYGL+EAKN+I K GYV++ EGYMDVI L + G VA LGT+ T
Sbjct: 227 LNSPETILFSKRRELYGLWEAKNSIRKYGYVIVVEGYMDVISLFKSGITNVVATLGTSVT 286
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
S HIK +L TN IIFSFDGD+AG AA RAL CL D I+FL L D YDPDSYI
Sbjct: 287 SDHIKSLLSITNKIIFSFDGDKAGYVAAWRALTTCLNELKDTSEIRFLILDDAYDPDSYI 346
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEI 266
G F +K+ ++ L +FF+ E+
Sbjct: 347 SSKGVDAFKEKINNSIPLSKFFINEL 372
>gi|119944096|ref|YP_941776.1| DNA primase [Psychromonas ingrahamii 37]
gi|119862700|gb|ABM02177.1| DNA primase [Psychromonas ingrahamii 37]
Length = 583
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/358 (38%), Positives = 212/358 (59%), Gaps = 28/358 (7%)
Query: 7 FYKIQL---KNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN-TLAS 62
FY+ QL KNS++ IN+LK RGL+ + + F +GYAP+ WN + K F ++ L
Sbjct: 129 FYQQQLRTHKNSQQVINYLKGRGLSGQTVKHFKIGYAPDGWNEVRKRFAVSADLEKQLIE 188
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+++ K EK YDRFR R+MFPI + G++IGFGGR++ D NE KY+N
Sbjct: 189 AGMLISK-----------EKSGSYDRFRDRLMFPIHDRRGRVIGFGGRVLGD-NEPKYLN 236
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETPLFHK ELYGL++ K A ++ VL+ EGYMDV+ L QFG VA LGT+ T
Sbjct: 237 SPETPLFHKGKELYGLYQVKQAYKEIKRVLVVEGYMDVVALGQFGIDYAVASLGTSTTPE 296
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
HI+++ +T+ +I FDGD+AG+ AA RALE L Y D + ++F+FL D DPDSY++K
Sbjct: 297 HIQQLFRHTSEVICCFDGDKAGKAAAWRALENALPYIQDGRTLRFMFLADGEDPDSYVQK 356
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F K + +A+ L F + ++ ++ T SK + L IPL S L +
Sbjct: 357 EGKEAFEKLIEQALPLSDFLFQHLLNQVDMSTA----DSKAKLAQL--AIPLMSKLPDTV 410
Query: 303 ISSL--SKIIKVSFNEINNLFKINTSSIKHKTIEKKN-IQPICIEYQIMKLLISYPSL 357
+ ++I + E L K+ ++ + I+K+ + P+ + + +L+ +P++
Sbjct: 411 FRQMMEGRLIALLGIEKEGLNKLLPAAASNSRIDKRQKVTPMRL---AISVLLQHPNI 465
>gi|78486148|ref|YP_392073.1| DNA primase [Thiomicrospira crunogena XCL-2]
gi|78364434|gb|ABB42399.1| DNA primase [Thiomicrospira crunogena XCL-2]
Length = 576
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/348 (37%), Positives = 199/348 (57%), Gaps = 17/348 (4%)
Query: 1 MICASDFYKIQLKN---SKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNN 56
M + FY+ QLKN S+EA +LK+RGL EI F +G+AP W++L + + D
Sbjct: 124 MHSVAKFYRQQLKNHPTSEEAKTYLKQRGLTSEIAKEFVIGFAPPGWDSLVSNLKADATL 183
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
L +G+++ K E K YDRFR RIMFPI++ G++I FGGR++
Sbjct: 184 KQQLVETGMLIQK-----------EDGKTYDRFRHRIMFPIRDGRGRVIAFGGRVLSSEE 232
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK+ LYGL+E + A ++ ++L+ EGYMDV+ L+QFG VA LG
Sbjct: 233 QPKYLNSPETPIFHKTVTLYGLYEMRQARQQVNHILVVEGYMDVVALAQFGIRNAVATLG 292
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T+ H+ + N ++F FDGD+AG++AA +ALE+ L D + IKFLFL DP
Sbjct: 293 TAITTEHLDIMFRQVNEVVFCFDGDEAGQKAAWKALELALPKMQDTRSIKFLFLDQGEDP 352
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS 296
DS +R+ G + F K++ +AM+L F + +I + +E + I I +
Sbjct: 353 DSTVRQEGVEGFQKRIQQAMTLSGFLFKGLIGRLG-SPVSTVEGQQQLIALATPYITSAP 411
Query: 297 SLRFKIISS-LSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICI 343
+++ LS + V + + I SS K + +KKN QP+ I
Sbjct: 412 GAMPDLLTKVLSDYVDVPVWRLGQIMGIRVSSTKQPSAKKKNEQPVRI 459
>gi|197335161|ref|YP_002157047.1| DNA primase [Vibrio fischeri MJ11]
gi|197316651|gb|ACH66098.1| DNA primase [Vibrio fischeri MJ11]
Length = 587
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 135/386 (34%), Positives = 220/386 (56%), Gaps = 21/386 (5%)
Query: 5 SDFYKIQLKNSK--EAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
S FY+ QLK++ AIN+LK RGL+ EI+ +F +GY +EW + N D + + L
Sbjct: 130 SQFYRSQLKSAANIHAINYLKDRGLSGEIVQKFGIGYIADEWELVKNNFGRDKASQDALV 189
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
S G++++ + +RYDRFRGR+MFPI++ G++IGFGGR+I + KY+
Sbjct: 190 SGGMLIES-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGRVIGEGT-PKYL 237
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETP+FHK ELYGL+EA A + L+ EGYMDV+ L+Q+G VA LGTA T
Sbjct: 238 NSPETPIFHKGKELYGLYEALQAYKDLPQALVVEGYMDVVALAQYGVDYAVASLGTATTG 297
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H++ + T++++ +DGD+AGR AA RA+E L Y D + +KF+FLPD DPD+YIR
Sbjct: 298 DHMQLLFRQTSTVVCCYDGDRAGREAAWRAMEQALPYLNDGRQLKFMFLPDGEDPDTYIR 357
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
++G + F +++ A SL+ F ++ + T + K L +P +LR
Sbjct: 358 QYGKEAFEQEIANAESLINFMFRTLVDQIDTSTREGKAKLTTLAVPLIDKVP-GGTLRLY 416
Query: 302 IISSLSKIIKV-SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
+ L K + + +++ L +++ K + + I+ + +++ LL+ P L
Sbjct: 417 LREQLGKTLGILDESQLQQLIS-KQGAVEPKRLAQPEIKRTAMR-EVITLLLQNPELAQL 474
Query: 361 INSEDMIIFSKCSQNYVKMFFQLIDT 386
+ D+ + + +F QL+++
Sbjct: 475 V--PDLESVKEIPLPGLSLFLQLLES 498
>gi|343512083|ref|ZP_08749228.1| DNA primase [Vibrio scophthalmi LMG 19158]
gi|342796434|gb|EGU32117.1| DNA primase [Vibrio scophthalmi LMG 19158]
Length = 587
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/277 (43%), Positives = 179/277 (64%), Gaps = 15/277 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDY-NNINTLASS 63
FY+ QLK SK AI++LK RGL+ EI+ +F +GY P+EW+ + K F N+ + L S
Sbjct: 132 FYRDQLKQPKSKIAIDYLKDRGLSGEIVQKFGIGYIPDEWDLVRKNFGQQKNSQDMLVSG 191
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++++ +K RYDRFRGR+MFPI++ G++IGFGGR+I + KY+NS
Sbjct: 192 GMLIEN-----------DKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVIGEGT-PKYLNS 239
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT+ T H
Sbjct: 240 PETPVFHKGKELYGLYEVLQAYREPPRILVVEGYMDVVALAQYGVDYSVASLGTSTTGDH 299
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++ + T+ ++ +DGD+AGR AA RA+E L Y TD + +KF+FLPD DPDSYIR+
Sbjct: 300 LQVLFRQTSLVVCCYDGDRAGREAAWRAMENALPYLTDGRQLKFMFLPDGEDPDSYIRQH 359
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK 280
G + F +++ A SL +F ++ + T + + K
Sbjct: 360 GKQAFEQQLDSATSLSEFMFSSLMQQVDTSTREGMAK 396
>gi|343515429|ref|ZP_08752486.1| DNA primase [Vibrio sp. N418]
gi|342798467|gb|EGU34080.1| DNA primase [Vibrio sp. N418]
Length = 587
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/277 (43%), Positives = 179/277 (64%), Gaps = 15/277 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDY-NNINTLASS 63
FY+ QLK SK AI++LK RGL+ EI+ +F +GY P+EW+ + K F N+ + L S
Sbjct: 132 FYRDQLKQPKSKIAIDYLKDRGLSGEIVQKFGIGYIPDEWDLVRKNFGQQKNSQDMLVSG 191
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++++ +K RYDRFRGR+MFPI++ G++IGFGGR+I + KY+NS
Sbjct: 192 GMLIEN-----------DKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVIGEGT-PKYLNS 239
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT+ T H
Sbjct: 240 PETPVFHKGKELYGLYEVLQAYREPPRILVVEGYMDVVALAQYGVDYSVASLGTSTTGDH 299
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++ + T+ ++ +DGD+AGR AA RA+E L Y TD + +KF+FLPD DPDSYIR+
Sbjct: 300 LQVLFRQTSLVVCCYDGDRAGREAAWRAMENALPYLTDGRQLKFMFLPDGEDPDSYIRQH 359
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK 280
G + F +++ A SL +F ++ + T + + K
Sbjct: 360 GKQAFEQQLDSATSLSEFMFSSLMQQVDTSTREGMAK 396
>gi|260775519|ref|ZP_05884416.1| DNA primase [Vibrio coralliilyticus ATCC BAA-450]
gi|260608700|gb|EEX34865.1| DNA primase [Vibrio coralliilyticus ATCC BAA-450]
Length = 585
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/270 (44%), Positives = 174/270 (64%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI- 57
M + FY+ QLK SK AI++LK+RGL+ EI+ +F +GY +EW+ + K F
Sbjct: 126 MTGIAQFYRDQLKLSTSKVAIDYLKERGLSGEIVQKFGIGYVADEWDLVRKNFGQQKQAQ 185
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L S G++++ +K RYDRFRGR+MFPI++ G++IGFGGR+I D
Sbjct: 186 DMLVSGGMLIEN-----------DKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVIGDGT- 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 234 PKYLNSPETPIFHKGKELYGLYEVTQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 294 STTGDHIQLLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLPDGEDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SYIRK+G F +++ +A+ L ++ E +I
Sbjct: 354 SYIRKYGKDAFEQQMHQAIPLSRYLFENLI 383
>gi|309783308|ref|ZP_07678019.1| DNA primase [Ralstonia sp. 5_7_47FAA]
gi|404397881|ref|ZP_10989664.1| DNA primase [Ralstonia sp. 5_2_56FAA]
gi|308917940|gb|EFP63626.1| DNA primase [Ralstonia sp. 5_7_47FAA]
gi|348611478|gb|EGY61126.1| DNA primase [Ralstonia sp. 5_2_56FAA]
Length = 328
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 190/333 (57%), Gaps = 16/333 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+ FY+ QL+ + A+ +LK RGL +I R+ LGYAP + AL + F +YN
Sbjct: 12 AASFYRGQLRAAHRAVAYLKARGLRGDIAARYGLGYAPAGFQALREAFPNYN-------- 63
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
D+ + K V + +RYDRFR RIMFPI + G +IGFGGR++ + + KY+NS
Sbjct: 64 ----DRALEKAGLVAVNDGGRRYDRFRDRIMFPILDDAGSVIGFGGRVL-EGDGPKYLNS 118
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +F K L+GL +A AI +G + EGY+DV+ L+Q G VA LGTA T H
Sbjct: 119 PETEVFQKGRVLFGLTQAAEAIAATGTAYVVEGYLDVVSLAQHGVQNAVATLGTATTGQH 178
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++++L +IF FDGD AGRRAA RAL+VCL + TD + FLFLP +DPDSY+R
Sbjct: 179 VERLLGLAKRVIFCFDGDDAGRRAAVRALDVCLPHVTDAADVSFLFLPRDHDPDSYVRAK 238
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F+ LEA SL FFL + L+ + + + I + L +I+
Sbjct: 239 GGDAFNDLALEASSLEGFFLASAMQGCQLEYAEGRARLVATAAPRLQQINAPAML-CRIL 297
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKK 336
++++ K S E+ +L + + + TI+++
Sbjct: 298 TAIAGPSKFSVGELIDLCGLEKNML--STIDRQ 328
>gi|209696104|ref|YP_002264034.1| DNA primase [Aliivibrio salmonicida LFI1238]
gi|208010057|emb|CAQ80380.1| DNA primase [Aliivibrio salmonicida LFI1238]
Length = 586
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 221/387 (57%), Gaps = 25/387 (6%)
Query: 5 SDFYKIQLKNSKE--AINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
S FY+ QLK++ AIN+LK+RGL+ EI +F +GY +EW + N D + + L
Sbjct: 129 SQFYRSQLKSANNIVAINYLKERGLSSEIAQKFGVGYIADEWELVKNNFGRDKASQDALV 188
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
S G++++ +K +RYDRFRGR+MFPI++ G++IGFGGR+I + KY+
Sbjct: 189 SGGMLIEN-----------DKGRRYDRFRGRVMFPIRDRRGRVIGFGGRVIGEGT-PKYL 236
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETP+FHK ELYGL+EA A + L+ EGYMDV+ L+QFG VA LGTA T
Sbjct: 237 NSPETPIFHKGKELYGLYEALQAYKDLPQALVVEGYMDVVALAQFGVDYAVASLGTATTG 296
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H++ + T++++ +DGD+AGR AA RA+E L Y D + +KF+FLPD DPD+YIR
Sbjct: 297 DHMQLLFRQTSTVVCCYDGDRAGREAAWRAMEQALPYLNDGRQLKFMFLPDGEDPDTYIR 356
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
++G + F +++ ++ SL+ F +I + + + K L +P +LR
Sbjct: 357 QYGKEAFEREIAQSESLINFMFRSLIDQVDTSSREGKAKLTTLAVPLIDKVP-GGTLRLY 415
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQP---ICIEYQIMKLLISYPSLI 358
+ L K + + + + L ++ + +T K+ +QP +++ LL+ P+L
Sbjct: 416 LREQLGKTLGIM--DESQLQQLISKQGAPET--KRQVQPDIKRTAMREVITLLLQNPNLA 471
Query: 359 NEINSEDMIIFSKCSQNYVKMFFQLID 385
+ D+ + +F QL++
Sbjct: 472 QLV--PDLSSVQDIPLPGLSLFLQLLE 496
>gi|149191851|ref|ZP_01870087.1| DNA primase [Vibrio shilonii AK1]
gi|148834327|gb|EDL51328.1| DNA primase [Vibrio shilonii AK1]
Length = 588
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 139/393 (35%), Positives = 221/393 (56%), Gaps = 29/393 (7%)
Query: 1 MICASDFYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI- 57
M +Y+ QLK S K AI +LK RGL+ EI+ +F +GY P+EW+++ K F
Sbjct: 127 MGTIGQYYRDQLKVSSNKAAIEYLKGRGLSGEIVQKFGIGYVPDEWDSVRKNFGQQKATQ 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L S G++++ +K RYDRFRGRIMFPI++ G++IGFGGR++ + +
Sbjct: 187 DMLVSGGMLIEN-----------DKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVLGN-DT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + VL+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQVLVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + T++++ +DGD+AGR AA RA+E L Y D + +KF+FLPD DPD
Sbjct: 295 STTGDHLQVLFRQTSTVVCCYDGDRAGRDAAWRAMENALPYLNDGRQLKFMFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
S+IR+ G + F +V AM L F ++ + +T + + K L +P +
Sbjct: 355 SFIRQNGKEAFETEVQNAMPLSDFMFSSLMQQVDSRTKEGMAKLSTLAVPLIDKVP-GGT 413
Query: 298 LRFKIISSLSKIIK-VSFNEINNLF----KINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
LR + L + + V ++ L + T + HK I++ ++ +++ LL+
Sbjct: 414 LRLYLRELLGRKLGLVDERQLQQLIDRQGQQETRAQPHKEIKRTPMR------EVIALLL 467
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLID 385
PS + D+ S + +F +++D
Sbjct: 468 QNPSYAEMV--PDLSTVRDLSLPGLNLFVEVVD 498
>gi|254237207|ref|ZP_04930530.1| DNA primase [Pseudomonas aeruginosa C3719]
gi|392981990|ref|YP_006480577.1| DNA primase [Pseudomonas aeruginosa DK2]
gi|419756059|ref|ZP_14282411.1| DNA primase [Pseudomonas aeruginosa PADK2_CF510]
gi|126169138|gb|EAZ54649.1| DNA primase [Pseudomonas aeruginosa C3719]
gi|384397721|gb|EIE44132.1| DNA primase [Pseudomonas aeruginosa PADK2_CF510]
gi|392317495|gb|AFM62875.1| DNA primase [Pseudomonas aeruginosa DK2]
Length = 664
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 195/337 (57%), Gaps = 19/337 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ A++FYK LK+ K A+N+LK RGL EI F LG+AP W N L + D
Sbjct: 121 LSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDTLQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ + +GL+V+ + KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 181 LKAMLDAGLLVENS----------DTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPETPVFHKGQELYGLYEARQKNRDLDEIMVVEGYMDVIALAQQGIRNAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + HIK++ SI+F FDGDQAGR+AA RALE L D K ++FLFLP+ DP
Sbjct: 290 TATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGEDP 349
Query: 237 DSYIRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +R G F ++ +A L ++F ++++L + T++ L + IP
Sbjct: 350 DSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIP-G 408
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL--FKINTSSIKH 330
++LR + LS+I +S I L SS+ H
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDH 445
>gi|423686990|ref|ZP_17661798.1| DNA primase [Vibrio fischeri SR5]
gi|371493749|gb|EHN69349.1| DNA primase [Vibrio fischeri SR5]
Length = 587
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 134/386 (34%), Positives = 220/386 (56%), Gaps = 21/386 (5%)
Query: 5 SDFYKIQLKNSK--EAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
S FY+ QLK++ AIN+LK RGL+ EI+ +F +GY +EW + N D + + L
Sbjct: 130 SQFYRSQLKSAANIHAINYLKDRGLSGEIVQKFGIGYIADEWELVKNNFGRDKASQDALV 189
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
S G++++ + +RYDRFRGR++FPI++ G++IGFGGR+I + KY+
Sbjct: 190 SGGMLIES-----------DNGRRYDRFRGRVIFPIRDRRGRVIGFGGRVIGEGT-PKYL 237
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETP+FHK ELYGL+EA A + L+ EGYMDV+ L+Q+G VA LGTA T
Sbjct: 238 NSPETPIFHKGKELYGLYEALQAYKDLPQALVVEGYMDVVALAQYGVDYAVASLGTATTG 297
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H++ + T++++ +DGD+AGR AA RA+E L Y D + +KF+FLPD DPD+YIR
Sbjct: 298 DHMQLLFRQTSTVVCCYDGDRAGREAAWRAMEQALPYLNDGRQLKFMFLPDGEDPDTYIR 357
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
++G + F +++ A SL+ F ++ + T + K L +P +LR
Sbjct: 358 QYGKEAFEQEIANAESLINFMFRTLVDQIDTSTREGKAKLTTLAVPLIDKVP-GGTLRLY 416
Query: 302 IISSLSKIIKV-SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
+ L K + + +++ L +++ K + + I+ + +++ LL+ P L
Sbjct: 417 LREQLGKTLGILDESQLQQLIS-KQGAVEPKRLAQPEIKRTAMR-EVITLLLQNPELAQL 474
Query: 361 INSEDMIIFSKCSQNYVKMFFQLIDT 386
+ D+ + + +F QL+++
Sbjct: 475 V--PDLESVKEIPLPGLSLFLQLLES 498
>gi|312883926|ref|ZP_07743643.1| DNA primase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368384|gb|EFP95919.1| DNA primase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 583
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 175/268 (65%), Gaps = 13/268 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI-NT 59
M S +Y+ QLK SK AI++LK+RGL+ I+ +F +GY +EW+++ K F + +
Sbjct: 126 MASISHYYRDQLKQSKAAIDYLKERGLSGPIVQKFGIGYIADEWDSIRKNFGQTPQLQDM 185
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L S G++++ EK RYDRFRGRIMFPI++ G++IGFGGR++ + K
Sbjct: 186 LVSGGMLIEN-----------EKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVLGEGT-PK 233
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT+
Sbjct: 234 YLNSPETPIFHKGKELYGLYEVMQAHREPSNILVVEGYMDVVALAQYGIDYSVASLGTST 293
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T HI+ + TN+++ +DGD+AG+ AA RALE L + +KFLFLPD DPDS+
Sbjct: 294 TGDHIQLLFRQTNTVVCCYDGDRAGKDAAWRALENALQFLKTGNTLKFLFLPDGEDPDSF 353
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEII 267
IR+ G + F +K+ E++ L ++ + +I
Sbjct: 354 IRQHGKEAFERKIAESIPLSRYLFDNLI 381
>gi|451983565|ref|ZP_21931844.1| DNA primase [Pseudomonas aeruginosa 18A]
gi|451758804|emb|CCQ84367.1| DNA primase [Pseudomonas aeruginosa 18A]
Length = 664
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 195/337 (57%), Gaps = 19/337 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ A++FYK LK+ K A+N+LK RGL EI F LG+AP W N L + D
Sbjct: 121 LSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNLQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ + +GL+V+ + KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 181 LKAMLDAGLLVENS----------DTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPETPVFHKGQELYGLYEARQKNRDLDEIMVVEGYMDVIALAQQGIRNAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + HIK++ SI+F FDGDQAGR+AA RALE L D K ++FLFLP+ DP
Sbjct: 290 TATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGEDP 349
Query: 237 DSYIRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +R G F ++ +A L ++F ++++L + T++ L + IP
Sbjct: 350 DSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIP-G 408
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL--FKINTSSIKH 330
++LR + LS+I +S I L SS+ H
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDH 445
>gi|15595774|ref|NP_249268.1| DNA primase [Pseudomonas aeruginosa PAO1]
gi|386056647|ref|YP_005973169.1| DNA primase [Pseudomonas aeruginosa M18]
gi|416855771|ref|ZP_11911692.1| DNA primase [Pseudomonas aeruginosa 138244]
gi|418584851|ref|ZP_13148908.1| DNA primase [Pseudomonas aeruginosa MPAO1/P1]
gi|418590804|ref|ZP_13154709.1| DNA primase [Pseudomonas aeruginosa MPAO1/P2]
gi|421515197|ref|ZP_15961883.1| DNA primase [Pseudomonas aeruginosa PAO579]
gi|18203017|sp|Q9I5W0.1|PRIM_PSEAE RecName: Full=DNA primase
gi|9946448|gb|AAG03966.1|AE004494_2 DNA primase [Pseudomonas aeruginosa PAO1]
gi|334842669|gb|EGM21272.1| DNA primase [Pseudomonas aeruginosa 138244]
gi|347302953|gb|AEO73067.1| DNA primase [Pseudomonas aeruginosa M18]
gi|375045183|gb|EHS37769.1| DNA primase [Pseudomonas aeruginosa MPAO1/P1]
gi|375050350|gb|EHS42832.1| DNA primase [Pseudomonas aeruginosa MPAO1/P2]
gi|404348925|gb|EJZ75262.1| DNA primase [Pseudomonas aeruginosa PAO579]
gi|453045959|gb|EME93677.1| DNA primase [Pseudomonas aeruginosa PA21_ST175]
Length = 664
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 195/337 (57%), Gaps = 19/337 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ A++FYK LK+ K A+N+LK RGL EI F LG+AP W N L + D
Sbjct: 121 LSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNLQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ + +GL+V+ + KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 181 LKAMLDAGLLVENS----------DTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPETPVFHKGQELYGLYEARQKNRDLDEIMVVEGYMDVIALAQQGIRNAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + HIK++ SI+F FDGDQAGR+AA RALE L D K ++FLFLP+ DP
Sbjct: 290 TATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGEDP 349
Query: 237 DSYIRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +R G F ++ +A L ++F ++++L + T++ L + IP
Sbjct: 350 DSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIP-G 408
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL--FKINTSSIKH 330
++LR + LS+I +S I L SS+ H
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDH 445
>gi|421178489|ref|ZP_15636102.1| DNA primase [Pseudomonas aeruginosa E2]
gi|404548338|gb|EKA57293.1| DNA primase [Pseudomonas aeruginosa E2]
Length = 664
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 195/337 (57%), Gaps = 19/337 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ A++FYK LK+ K A+N+LK RGL EI F LG+AP W N L + D
Sbjct: 121 LSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNLQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ + +GL+V+ + KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 181 LKAMLDAGLLVENS----------DTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPETPVFHKGQELYGLYEARQKNRDLDEIMVVEGYMDVIALAQQGIRNAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + HIK++ SI+F FDGDQAGR+AA RALE L D K ++FLFLP+ DP
Sbjct: 290 TATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGEDP 349
Query: 237 DSYIRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +R G F ++ +A L ++F ++++L + T++ L + IP
Sbjct: 350 DSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIP-G 408
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL--FKINTSSIKH 330
++LR + LS+I +S I L SS+ H
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDH 445
>gi|355646994|ref|ZP_09054747.1| DNA primase [Pseudomonas sp. 2_1_26]
gi|354828136|gb|EHF12263.1| DNA primase [Pseudomonas sp. 2_1_26]
Length = 664
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 195/337 (57%), Gaps = 19/337 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ A++FYK LK+ K A+N+LK RGL EI F LG+AP W N L + D
Sbjct: 121 LSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNLQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ + +GL+V+ + KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 181 LKAMLDAGLLVENS----------DTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPETPVFHKGQELYGLYEARQKNRDLDEIMVVEGYMDVIALAQQGIRNAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + HIK++ SI+F FDGDQAGR+AA RALE L D K ++FLFLP+ DP
Sbjct: 290 TATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGEDP 349
Query: 237 DSYIRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +R G F ++ +A L ++F ++++L + T++ L + IP
Sbjct: 350 DSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIP-G 408
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL--FKINTSSIKH 330
++LR + LS+I +S I L SS+ H
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDH 445
>gi|218889318|ref|YP_002438182.1| DNA primase [Pseudomonas aeruginosa LESB58]
gi|218769541|emb|CAW25301.1| DNA primase [Pseudomonas aeruginosa LESB58]
Length = 664
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 195/337 (57%), Gaps = 19/337 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ A++FYK LK+ K A+N+LK RGL EI F LG+AP W N L + D
Sbjct: 121 LSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNLQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ + +GL+V+ + KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 181 LKAMLDAGLLVENS----------DTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPETPVFHKGQELYGLYEARQKNRDLDEIMVVEGYMDVIALAQQGIRNAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + HIK++ SI+F FDGDQAGR+AA RALE L D K ++FLFLP+ DP
Sbjct: 290 TATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGEDP 349
Query: 237 DSYIRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +R G F ++ +A L ++F ++++L + T++ L + IP
Sbjct: 350 DSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIP-G 408
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL--FKINTSSIKH 330
++LR + LS+I +S I L SS+ H
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDH 445
>gi|107099563|ref|ZP_01363481.1| hypothetical protein PaerPA_01000576 [Pseudomonas aeruginosa PACS2]
gi|116054305|ref|YP_788750.1| DNA primase [Pseudomonas aeruginosa UCBPP-PA14]
gi|421151663|ref|ZP_15611271.1| DNA primase [Pseudomonas aeruginosa ATCC 14886]
gi|421165455|ref|ZP_15623783.1| DNA primase [Pseudomonas aeruginosa ATCC 700888]
gi|421172342|ref|ZP_15630117.1| DNA primase [Pseudomonas aeruginosa CI27]
gi|115589526|gb|ABJ15541.1| putative DNA primase [Pseudomonas aeruginosa UCBPP-PA14]
gi|404526863|gb|EKA37050.1| DNA primase [Pseudomonas aeruginosa ATCC 14886]
gi|404537938|gb|EKA47501.1| DNA primase [Pseudomonas aeruginosa CI27]
gi|404541668|gb|EKA51019.1| DNA primase [Pseudomonas aeruginosa ATCC 700888]
Length = 664
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 195/337 (57%), Gaps = 19/337 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ A++FYK LK+ K A+N+LK RGL EI F LG+AP W N L + D
Sbjct: 121 LSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNLQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ + +GL+V+ + KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 181 LKAMLDAGLLVENS----------DTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPETPVFHKGQELYGLYEARQKNRDLDEIMVVEGYMDVIALAQQGIRNAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + HIK++ SI+F FDGDQAGR+AA RALE L D K ++FLFLP+ DP
Sbjct: 290 TATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGEDP 349
Query: 237 DSYIRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +R G F ++ +A L ++F ++++L + T++ L + IP
Sbjct: 350 DSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIP-G 408
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL--FKINTSSIKH 330
++LR + LS+I +S I L SS+ H
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDH 445
>gi|424942998|ref|ZP_18358761.1| DNA primase [Pseudomonas aeruginosa NCMG1179]
gi|346059444|dbj|GAA19327.1| DNA primase [Pseudomonas aeruginosa NCMG1179]
Length = 664
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 195/337 (57%), Gaps = 19/337 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ A++FYK LK+ K A+N+LK RGL EI F LG+AP W N L + D
Sbjct: 121 LSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNLQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ + +GL+V+ + KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 181 LKAMLDAGLLVENS----------DTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPETPVFHKGQELYGLYEARQKNRDLDEIMVVEGYMDVIALAQQGIHNAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + HIK++ SI+F FDGDQAGR+AA RALE L D K ++FLFLP+ DP
Sbjct: 290 TATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGEDP 349
Query: 237 DSYIRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +R G F ++ +A L ++F ++++L + T++ L + IP
Sbjct: 350 DSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIP-G 408
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL--FKINTSSIKH 330
++LR + LS+I +S I L SS+ H
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDH 445
>gi|313111778|ref|ZP_07797571.1| putative DNA primase [Pseudomonas aeruginosa 39016]
gi|386068503|ref|YP_005983807.1| DNA primase [Pseudomonas aeruginosa NCGM2.S1]
gi|416873045|ref|ZP_11917172.1| DNA primase [Pseudomonas aeruginosa 152504]
gi|310884073|gb|EFQ42667.1| putative DNA primase [Pseudomonas aeruginosa 39016]
gi|334845343|gb|EGM23906.1| DNA primase [Pseudomonas aeruginosa 152504]
gi|348037062|dbj|BAK92422.1| DNA primase [Pseudomonas aeruginosa NCGM2.S1]
Length = 664
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 195/337 (57%), Gaps = 19/337 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ A++FYK LK+ K A+N+LK RGL EI F LG+AP W N L + D
Sbjct: 121 LSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNLQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ + +GL+V+ + KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 181 LKAMLDAGLLVENS----------DTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPETPVFHKGQELYGLYEARQKNRDLDEIMVVEGYMDVIALAQQGIRNAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + HIK++ SI+F FDGDQAGR+AA RALE L D K ++FLFLP+ DP
Sbjct: 290 TATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGEDP 349
Query: 237 DSYIRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +R G F ++ +A L ++F ++++L + T++ L + IP
Sbjct: 350 DSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIP-G 408
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL--FKINTSSIKH 330
++LR + LS+I +S I L SS+ H
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDH 445
>gi|254243671|ref|ZP_04936993.1| DNA primase [Pseudomonas aeruginosa 2192]
gi|420137172|ref|ZP_14645167.1| DNA primase [Pseudomonas aeruginosa CIG1]
gi|421157617|ref|ZP_15616974.1| DNA primase [Pseudomonas aeruginosa ATCC 25324]
gi|126197049|gb|EAZ61112.1| DNA primase [Pseudomonas aeruginosa 2192]
gi|403250013|gb|EJY63474.1| DNA primase [Pseudomonas aeruginosa CIG1]
gi|404550424|gb|EKA59173.1| DNA primase [Pseudomonas aeruginosa ATCC 25324]
Length = 664
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 195/337 (57%), Gaps = 19/337 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ A++FYK LK+ K A+N+LK RGL EI F LG+AP W N L + D
Sbjct: 121 LSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNLQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ + +GL+V+ + KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 181 LKAMLDAGLLVENS----------DTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPETPVFHKGQELYGLYEARQKNRDLDEIMVVEGYMDVIALAQQGIRNAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + HIK++ SI+F FDGDQAGR+AA RALE L D K ++FLFLP+ DP
Sbjct: 290 TATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGEDP 349
Query: 237 DSYIRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +R G F ++ +A L ++F ++++L + T++ L + IP
Sbjct: 350 DSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIP-G 408
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL--FKINTSSIKH 330
++LR + LS+I +S I L SS+ H
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDH 445
>gi|375132020|ref|YP_004994120.1| DNA primase [Vibrio furnissii NCTC 11218]
gi|315181194|gb|ADT88108.1| DNA primase [Vibrio furnissii NCTC 11218]
Length = 581
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 118/275 (42%), Positives = 177/275 (64%), Gaps = 15/275 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK ++++AI +LK RGL+ EI+ +F +GY +EW+ + K F +N
Sbjct: 126 MGSIAQFYRQQLKVSSNRDAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRKNFGQSRHNQ 185
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L S G++++ + RYDRFRGR+MFPI++ G++IGFGGR++ D
Sbjct: 186 DMLVSGGMLIEN-----------DNGNRYDRFRGRVMFPIRDRRGRVIGFGGRVLGDGT- 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 234 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGIDYSVASLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN+++ +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 294 STTGDHLQLLFRQTNTVVCCYDGDRAGREAAWRALENALSYLKSGNILKFLFLPDGEDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
SY+RK+G + F +++ EA L ++ ++ N+
Sbjct: 354 SYVRKYGKEAFEQQMHEAEPLSKYLFSNLLSQVNV 388
>gi|260767411|ref|ZP_05876348.1| DNA primase [Vibrio furnissii CIP 102972]
gi|260617523|gb|EEX42705.1| DNA primase [Vibrio furnissii CIP 102972]
Length = 581
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 118/275 (42%), Positives = 177/275 (64%), Gaps = 15/275 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK ++++AI +LK RGL+ EI+ +F +GY +EW+ + K F +N
Sbjct: 126 MGSIAQFYRQQLKVSSNRDAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRKNFGQSRHNQ 185
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L S G++++ + RYDRFRGR+MFPI++ G++IGFGGR++ D
Sbjct: 186 DMLVSGGMLIEN-----------DNGNRYDRFRGRVMFPIRDRRGRVIGFGGRVLGDGT- 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 234 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGIDYSVASLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN+++ +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 294 STTGDHLQLLFRQTNTVVCCYDGDRAGREAAWRALENALSYLKSGNILKFLFLPDGEDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
SY+RK+G + F +++ EA L ++ ++ N+
Sbjct: 354 SYVRKYGKEAFEQQMHEAEPLSKYLFSNLLSQVNV 388
>gi|406943205|gb|EKD75261.1| hypothetical protein ACD_44C00190G0002 [uncultured bacterium]
Length = 571
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 129/269 (47%), Positives = 168/269 (62%), Gaps = 13/269 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDY-NNINTLASS 63
+ FY+ QLK S AI +LK+RGL+ EI +F +G+AP W+ + + F ++ L+
Sbjct: 121 TQFYQQQLKISPPAIAYLKERGLSGEIAKQFAIGFAPPGWDHILQTFGKTPDDKQKLSEL 180
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G+++ K E+ YDRFR RIMFPI + G+I+GFGGR+I D E KY+NS
Sbjct: 181 GMLIKK-----------EEGGHYDRFRERIMFPIHDRRGRIVGFGGRII-DKGEPKYLNS 228
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+F K ELYGL+EA+ ++ VLI EGYMDVI L Q G VA LGTA TS H
Sbjct: 229 PETPIFQKGRELYGLYEAQQTHQELSRVLIVEGYMDVIALFQHGITYAVATLGTATTSHH 288
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+++ YT+ +IF FDGD AGR AA RAL V L D I F+FLPD DPDS IRK
Sbjct: 289 IQRLARYTSHLIFCFDGDTAGRTAAWRALLVILPLMQDGLQIHFMFLPDNEDPDSLIRKI 348
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
G + F KK+ EA L FF + + L +L
Sbjct: 349 GKENFEKKMEEAHPLSHFFFQSLALETDL 377
>gi|350530165|ref|ZP_08909106.1| DNA primase [Vibrio rotiferianus DAT722]
Length = 586
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 120/270 (44%), Positives = 174/270 (64%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK SK AI +LK RGL+ EI+ +F +GY +EW+ + K F + +N
Sbjct: 127 MGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQNKDNQ 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ +K RYDRFRGRIMFPI++ G++IGFGGR++ D
Sbjct: 187 DMLVTGGMLIEN-----------DKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVLGDGT- 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + VL+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPRVLVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 295 STTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G + F +++ +A L + + +I
Sbjct: 355 SYVRKYGKQAFEQQIEQATPLSSYLFDNLI 384
>gi|388600385|ref|ZP_10158781.1| DNA primase [Vibrio campbellii DS40M4]
Length = 586
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/270 (44%), Positives = 174/270 (64%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK SK AI +LK RGL+ EI+ +F +GY +EW+ + K F + +N
Sbjct: 127 MGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQNKDNQ 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ +K RYDRFRGRIMFPI++ G++IGFGGR++ D
Sbjct: 187 DMLVTGGMLIEN-----------DKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVLGDGT- 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + VL+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPRVLVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 295 STTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G + F +++ +A L + + +I
Sbjct: 355 SYVRKYGKQAFEQQIEQATPLSSYLFDNLI 384
>gi|372270822|ref|ZP_09506870.1| DNA primase [Marinobacterium stanieri S30]
Length = 616
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 203/347 (58%), Gaps = 24/347 (6%)
Query: 4 ASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
A+ F++ QL+ S E A+N+LK+RGL+ +I F +GYAP W+ L F +N L
Sbjct: 123 ANTFFQQQLRQSPERERAVNYLKQRGLSGQIAAAFGIGYAPPGWDNLMNHFSAVDNATEL 182
Query: 61 -ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
SG+V I N+ EK YDRFR RIMFPI++ G+++GFGGR++ D ++ K
Sbjct: 183 LEQSGMV---IHNE-------EKASHYDRFRDRIMFPIRDVRGRVLGFGGRVLGD-DKPK 231
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP FHK ELYGL+EA+ +LI EGYMDV+ L+Q G +VA LGTA
Sbjct: 232 YLNSPETPTFHKGRELYGLYEARQHSNHLDRLLIVEGYMDVVSLAQHGIHWSVATLGTAT 291
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T+ H++++ +IF FDGDQAGR AA RAL L D + +FLFLPD DPD+
Sbjct: 292 TAQHLERLFKLVPEVIFCFDGDQAGRTAALRALHTTLPVIKDGQEARFLFLPDGEDPDTL 351
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS-L 298
+R+ G FS++V +A+ L +FF + + + +L ++ +++++ L I + L
Sbjct: 352 VRQEGEAAFSERVTQALPLSEFFFKSLTEDADLSSMDG--RARFSNTALPLIQSMQPGLL 409
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEY 345
+ ++ + +I +S ++ ++ + H+ + QP +Y
Sbjct: 410 KQMMMDRICEITGLSLEQLGSVIDL------HQVTQPSQEQPPPEQY 450
>gi|153834243|ref|ZP_01986910.1| DNA primase [Vibrio harveyi HY01]
gi|148869431|gb|EDL68437.1| DNA primase [Vibrio harveyi HY01]
Length = 586
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/270 (44%), Positives = 174/270 (64%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK SK AI +LK RGL+ EI+ +F +GY +EW+ + K F + +N
Sbjct: 127 MGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQNKDNQ 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ +K RYDRFRGRIMFPI++ G++IGFGGR++ D
Sbjct: 187 DMLVTGGMLIEN-----------DKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVLGDGT- 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + VL+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPRVLVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 295 STTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G + F +++ +A L + + +I
Sbjct: 355 SYVRKYGKQAFEQQIEQATPLSSYLFDNLI 384
>gi|156973169|ref|YP_001444076.1| DNA primase [Vibrio harveyi ATCC BAA-1116]
gi|156524763|gb|ABU69849.1| hypothetical protein VIBHAR_00849 [Vibrio harveyi ATCC BAA-1116]
Length = 586
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/270 (44%), Positives = 174/270 (64%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK SK AI +LK RGL+ EI+ +F +GY +EW+ + K F + +N
Sbjct: 127 MGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQNKDNQ 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ +K RYDRFRGRIMFPI++ G++IGFGGR++ D
Sbjct: 187 DMLVTGGMLIEN-----------DKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVLGDGT- 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + VL+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPRVLVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 295 STTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G + F +++ +A L + + +I
Sbjct: 355 SYVRKYGKQAFEQQIEQATPLSSYLFDNLI 384
>gi|343498225|ref|ZP_08736264.1| DNA primase [Vibrio tubiashii ATCC 19109]
gi|418477567|ref|ZP_13046695.1| DNA primase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342824666|gb|EGU59201.1| DNA primase [Vibrio tubiashii ATCC 19109]
gi|384574832|gb|EIF05291.1| DNA primase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 585
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/402 (35%), Positives = 225/402 (55%), Gaps = 35/402 (8%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN 58
M FY+ QLK SK AI++LK+RGL+ +I+ +F +GY +EW+ + K F
Sbjct: 126 MGSIGQFYRDQLKQPKSKVAIDYLKERGLSGQIVQKFGIGYVADEWDLVRKNFGQTPQTQ 185
Query: 59 T-LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L S G++++ +K RYDRFRGR+MFPI++ G++IGFGGR+I D
Sbjct: 186 EMLVSGGMLIEN-----------DKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVIGDGT- 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 234 PKYLNSPETPIFHKGKELYGLYEVMQAYREPTQILVVEGYMDVVALAQYGVDYSVASLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 294 STTGDHIQLLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLPDGEDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKS--KYNIEYLFKIIPLS 295
SY+RK+G + F +++ +A L + + +I ++L + KS + + L IP
Sbjct: 354 SYVRKYGKEAFEQQIEQATPLSSYLFDNLIEIHSLNLGSNEGKSALRAHASALIDKIP-- 411
Query: 296 SSLRFKIISSLSKII--KVSFNEINNLFKINTSSIK---HKTIEKKNIQPICIEYQIMKL 350
F+ + L K++ + F+ + TS + HK I++ ++ +++ L
Sbjct: 412 -DPYFQEL--LEKLLDERTGFDNRLRQTRKKTSETRPQPHKEIKRTPMR------EVIAL 462
Query: 351 LISYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKN 392
LI PS + D+ + + + +F +++D H N
Sbjct: 463 LIQNPSYAEMV--PDLSTVRELTVPGLSLFAEVLDYCHQHPN 502
>gi|424047982|ref|ZP_17785538.1| DNA primase [Vibrio cholerae HENC-03]
gi|408883292|gb|EKM22079.1| DNA primase [Vibrio cholerae HENC-03]
Length = 587
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/364 (37%), Positives = 210/364 (57%), Gaps = 29/364 (7%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK SK AI +LK RGL+ EI+ +F +GY +EW+ + K F + +N
Sbjct: 127 MGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQNKDNQ 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ +K RYDRFRGRIMFPI++ G++IGFGGR++ D
Sbjct: 187 DMLVTGGMLIEN-----------DKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVLGDGT- 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPRILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 295 STTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
SY+RK+G + F +++ +A L + + +I + + + KS Y +I
Sbjct: 355 SYVRKYGKQAFEQQIEQATPLSSYLFDNLIELHQINLGNNEGKSALRA-YASALIDKIPD 413
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK-----INTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
F+ + L K++ NNL + +T HK I++ ++ +++ LLI
Sbjct: 414 PYFQEL--LEKLLDERTGFDNNLRQTRRKNTDTRPQPHKEIKRTPMR------EVIALLI 465
Query: 353 SYPS 356
PS
Sbjct: 466 QNPS 469
>gi|163802688|ref|ZP_02196579.1| DNA primase [Vibrio sp. AND4]
gi|159173576|gb|EDP58396.1| DNA primase [Vibrio sp. AND4]
Length = 586
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/270 (45%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK SK AI +LK RGL+ EI+ +F +GY +EW+ + K F + +N
Sbjct: 127 MGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQNKDNQ 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ EK RYDRFRGRIMFPI + G++IGFGGR++ D
Sbjct: 187 DMLVTGGMLIEN-----------EKGNRYDRFRGRIMFPIHDRRGRVIGFGGRVLGDGT- 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPRILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 295 STTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SYIRK G + F ++V +A L + + +I
Sbjct: 355 SYIRKHGKQAFEQQVEQATPLSSYLFDNLI 384
>gi|424031952|ref|ZP_17771374.1| DNA primase [Vibrio cholerae HENC-01]
gi|408876514|gb|EKM15628.1| DNA primase [Vibrio cholerae HENC-01]
Length = 585
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 174/270 (64%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK SK AI +LK RGL+ EI+ +F +GY +EW+ + K F + +N
Sbjct: 126 MGSIAQFYRNQLKQPTSKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQNKDNQ 185
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ +K RYDRFRGRIMFPI++ G++IGFGGR++ D
Sbjct: 186 DMLVTGGMLIEN-----------DKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVLGDGT- 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 234 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPRILVVEGYMDVVALAQYGVDYSVASLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 294 STTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLPDGEDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G + F +++ +A L + + +I
Sbjct: 354 SYVRKYGKQAFEQQIEQATPLSSYLFDNLI 383
>gi|444424658|ref|ZP_21220113.1| DNA primase [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444242150|gb|ELU53666.1| DNA primase [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 586
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/270 (44%), Positives = 174/270 (64%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK SK AI +LK RGL+ EI+ +F +GY +EW+ + K F + +N
Sbjct: 127 MGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQNKDNQ 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ +K RYDRFRGRIMFPI++ G++IGFGGR++ D
Sbjct: 187 DMLVTGGMLIEN-----------DKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVLGDGT- 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + VL+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPRVLVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 295 STTGDHIQMLFRQTNTVVCCYDGDRAGKDAAWRALENALQYLKTGNTLKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G + F +++ +A L + + +I
Sbjct: 355 SYVRKYGKQAFEQQIEQATPLSSYLFDNLI 384
>gi|422921748|ref|ZP_16954955.1| DNA primase [Vibrio cholerae BJG-01]
gi|341647963|gb|EGS72031.1| DNA primase [Vibrio cholerae BJG-01]
Length = 587
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/270 (44%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 127 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNFGQQRSSE 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I D
Sbjct: 187 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITDQGT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 295 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 355 SYVRKYGKADFEQQVANATPLSQYLFENLI 384
>gi|269960188|ref|ZP_06174563.1| DNA primase [Vibrio harveyi 1DA3]
gi|269834995|gb|EEZ89079.1| DNA primase [Vibrio harveyi 1DA3]
Length = 586
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 174/270 (64%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK SK AI +LK RGL+ EI+ +F +GY +EW+ + K F + +N
Sbjct: 127 MGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQNKDNQ 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ +K RYDRFRGRIMFPI++ G++IGFGGR++ D
Sbjct: 187 DMLVTGGMLIEN-----------DKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVLGDGT- 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPRILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 295 STTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G + F +++ +A L + + +I
Sbjct: 355 SYVRKYGKQAFEQQIEQATPLSSYLFDNLI 384
>gi|345871734|ref|ZP_08823677.1| DNA primase [Thiorhodococcus drewsii AZ1]
gi|343920120|gb|EGV30859.1| DNA primase [Thiorhodococcus drewsii AZ1]
Length = 584
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/393 (35%), Positives = 213/393 (54%), Gaps = 34/393 (8%)
Query: 4 ASDFYKIQLKN---SKEAINFLKKRGLNEEIILRFNLGYAPNEWN-ALNKVFLDYNNINT 59
A+ Y+ QL++ + A+ +LK RGL+ EI FNLGYAP + L+++
Sbjct: 120 AATLYREQLRDVQHAGRAVEYLKSRGLSGEIAGAFNLGYAPPGHDFLLSRLGATAEQRER 179
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L S GL+ + +RYDRFR R+MFPI++ G++IGFGGRL+ D + K
Sbjct: 180 LMSVGLLAES------------DGRRYDRFRDRVMFPIRDRRGRVIGFGGRLLGD-GKPK 226
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETPLFHK ELYGLFEA+ A K G +LI EGY+DVI L+QFG VA LGTA
Sbjct: 227 YLNSPETPLFHKGRELYGLFEAQKADRKLGSLLIVEGYLDVIALAQFGITNAVATLGTAT 286
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T+ H++++L ++F FDGD+AGR AA +ALE L T + I+FLFLP+ DPD+
Sbjct: 287 TADHLQQLLRTVPEVVFCFDGDRAGRSAAWKALETALPLVTGHQSIRFLFLPEGEDPDTL 346
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
+R G + S+ V A L +F + + ++ +I + + L +P+ L
Sbjct: 347 VRAQGAEGMSRLVNGATPLSEFLFDHLTDQVDMTSIDGRARLGNLAKPLLDRMPV--GLY 404
Query: 300 FKIISSLSKIIKVSFNEINNLFKINT-----SSIKHKTIEKKNIQPICIEYQIMKLLISY 354
++S N I NL + T S+ + + + + + Q + LL+ +
Sbjct: 405 RDLVS----------NRIANLTGLTTTPKSRSAGRRGPVVSQRPMRLSLVAQAIALLLDH 454
Query: 355 PSLINEINSEDMIIFSKCSQNYVKMFFQLIDTI 387
P L+ + + + + S + + +L+D +
Sbjct: 455 PELVTRVVEQADDRWRRSSNPGIDVLAELLDML 487
>gi|296387083|ref|ZP_06876582.1| DNA primase [Pseudomonas aeruginosa PAb1]
Length = 443
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 191/325 (58%), Gaps = 17/325 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ A++FYK LK+ K A+N+LK RGL EI F LG+AP W N L + D
Sbjct: 121 LSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNLQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ + +GL+V+ + KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 181 LKAMLDAGLLVENS----------DTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPETPVFHKGQELYGLYEARQKNRDLDEIMVVEGYMDVIALAQQGIRNAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + HIK++ SI+F FDGDQAGR+AA RALE L D K ++FLFLP+ DP
Sbjct: 290 TATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGEDP 349
Query: 237 DSYIRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +R G F ++ +A L ++F ++++L + T++ L + IP
Sbjct: 350 DSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIP-G 408
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL 320
++LR + LS+I +S I L
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQL 433
>gi|429887705|ref|ZP_19369215.1| DNA primase [Vibrio cholerae PS15]
gi|429225274|gb|EKY31541.1| DNA primase [Vibrio cholerae PS15]
Length = 587
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/270 (44%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 127 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I D
Sbjct: 187 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITDQGT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 295 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 355 SYVRKYGKADFEQQVANATPLSQYLFENLI 384
>gi|422909040|ref|ZP_16943692.1| DNA primase [Vibrio cholerae HE-09]
gi|341636122|gb|EGS60825.1| DNA primase [Vibrio cholerae HE-09]
Length = 587
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/270 (44%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 127 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I D
Sbjct: 187 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITDQGT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 295 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 355 SYVRKYGKADFEQQVANATPLSQYLFENLI 384
>gi|152984629|ref|YP_001346115.1| DNA primase [Pseudomonas aeruginosa PA7]
gi|150959787|gb|ABR81812.1| DNA primase [Pseudomonas aeruginosa PA7]
Length = 663
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 134/339 (39%), Positives = 196/339 (57%), Gaps = 18/339 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ A++FYK LK+ K A+N+LK RGL EI F LG+AP W N L + D
Sbjct: 121 LAAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNLQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ + +GL+V+ + KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 181 LKAMLDAGLLVENS----------DSGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPETPVFHKGQELYGLYEARQKNRDLDEIMVVEGYMDVIALAQQGIRNAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + HIK++ SI+F FDGDQAGR+AA RALE L D K ++FLFLP+ DP
Sbjct: 290 TATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGEDP 349
Query: 237 DSYIRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +R G F ++ +A L ++F ++++ + T++ L + IP
Sbjct: 350 DSLVRAEGEDAFRARITQQAQPLAEYFFQQLMAEADPATLEGKAHLATLAAPLLEKIP-G 408
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKIN-TSSIKHKTI 333
++LR + LS+I +S I L + + ++ H T
Sbjct: 409 NNLRQLMRQKLSEITGLSGENIGQLAQQSPPPAMDHGTT 447
>gi|417819378|ref|ZP_12465995.1| DNA primase [Vibrio cholerae HE39]
gi|423946535|ref|ZP_17733443.1| DNA primase [Vibrio cholerae HE-40]
gi|423975973|ref|ZP_17736990.1| DNA primase [Vibrio cholerae HE-46]
gi|340041234|gb|EGR02201.1| DNA primase [Vibrio cholerae HE39]
gi|408662014|gb|EKL32991.1| DNA primase [Vibrio cholerae HE-40]
gi|408666147|gb|EKL36946.1| DNA primase [Vibrio cholerae HE-46]
Length = 587
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/270 (44%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 127 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I D
Sbjct: 187 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITDQGT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 295 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 355 SYVRKYGKADFEQQVANATPLSQYLFENLI 384
>gi|422305927|ref|ZP_16393114.1| DNA primase [Vibrio cholerae CP1035(8)]
gi|408627828|gb|EKL00621.1| DNA primase [Vibrio cholerae CP1035(8)]
Length = 587
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/270 (44%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 127 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I D
Sbjct: 187 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITDQGT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 295 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 355 SYVRKYGKADFEQQVANATPLSQYLFENLI 384
>gi|254509364|ref|ZP_05121451.1| DNA primase [Vibrio parahaemolyticus 16]
gi|219547706|gb|EED24744.1| DNA primase [Vibrio parahaemolyticus 16]
Length = 389
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/270 (44%), Positives = 171/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN 58
M + FY+ QLK +SK AI +LK RGL+ EI+ +F +GY +EW+ + K F
Sbjct: 126 MGSIAQFYRDQLKQSSSKIAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQQQQTQ 185
Query: 59 T-LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L S G++++ +K RYDRFRGR+MFPI++ G++IGFGGR+I D
Sbjct: 186 EMLVSGGMLIEN-----------DKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVIGDGT- 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 234 PKYLNSPETPIFHKGKELYGLYEVMQAHREPSQILVVEGYMDVVALAQYGVDYSVASLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 294 STTGDHIQLLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLPDGEDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RKFG + F +++ +A L + + +I
Sbjct: 354 SYVRKFGKQAFEQQIEQATPLSSYLFDNLI 383
>gi|449146529|ref|ZP_21777302.1| DNA primase [Vibrio mimicus CAIM 602]
gi|449077761|gb|EMB48722.1| DNA primase [Vibrio mimicus CAIM 602]
Length = 587
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/275 (42%), Positives = 175/275 (63%), Gaps = 15/275 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK N++ AI +LK RGL+ EI+ +F +GY +EW+ + + F N+
Sbjct: 127 MGSIAQFYRQQLKQPNNRHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNFGQQRNSE 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 187 DMLVTAGMLIES-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN ++ +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 295 STTGDHLQLLFRQTNQVVCCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
SY+RK+G F +++ A L Q+ + +I + L
Sbjct: 355 SYVRKYGKADFEQQLANATPLSQYLFDNLIELHQL 389
>gi|421353332|ref|ZP_15803665.1| DNA primase [Vibrio cholerae HE-45]
gi|395954679|gb|EJH65288.1| DNA primase [Vibrio cholerae HE-45]
Length = 587
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/270 (44%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 127 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I D
Sbjct: 187 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITDQGT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 295 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 355 SYVRKYGKADFEQQVANATPLSQYLFENLI 384
>gi|343494356|ref|ZP_08732618.1| DNA primase [Vibrio nigripulchritudo ATCC 27043]
gi|342825261|gb|EGU59760.1| DNA primase [Vibrio nigripulchritudo ATCC 27043]
Length = 584
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/270 (44%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN 58
M + FY+ QLK +SK AI++LK RGL++E++ +F +G+ +EW+ + K F N
Sbjct: 125 MGSIAQFYRSQLKLSSSKHAIDYLKDRGLSKEVVQKFGIGFVADEWDLVRKNFGQSPNAQ 184
Query: 59 T-LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L S G++++ +K RYDRFRGR+MFPI++ G++IGFGGR+I D
Sbjct: 185 EMLVSGGMLIEN-----------DKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVIGDGT- 232
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + VL+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 233 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQVLVVEGYMDVVALAQYGVDYSVASLGT 292
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 293 STTGDHLQVLFRQTNTVVCCYDGDRAGKEAAWRALENSLSYLKTGNTLKFLFLPDGEDPD 352
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SYIR+ G + F ++V A L + E +I
Sbjct: 353 SYIRQHGKEAFEEQVKNATPLSSYLFENLI 382
>gi|258623777|ref|ZP_05718734.1| DNA primase [Vibrio mimicus VM603]
gi|258583900|gb|EEW08692.1| DNA primase [Vibrio mimicus VM603]
Length = 591
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 118/275 (42%), Positives = 175/275 (63%), Gaps = 15/275 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK N++ AI +LK RGL+ EI+ +F +GY +EW+ + + F N+
Sbjct: 131 MGSIAQFYRQQLKQPNNRHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNFGQQRNSE 190
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 191 DMLVTAGMLIES-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 238
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 239 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 298
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN ++ +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 299 STTGDHLQLLFRQTNQVVCCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 358
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
SY+RK+G F +++ A L Q+ + +I + L
Sbjct: 359 SYVRKYGKADFEQQLANATPLSQYLFDNLIELHQL 393
>gi|269103528|ref|ZP_06156225.1| DNA primase [Photobacterium damselae subsp. damselae CIP 102761]
gi|268163426|gb|EEZ41922.1| DNA primase [Photobacterium damselae subsp. damselae CIP 102761]
Length = 584
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 235/431 (54%), Gaps = 33/431 (7%)
Query: 1 MICASDFYKIQLKNSKE--AINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNI 57
M + FY+ QL+ + AI++LK RGL+ EI+ +F +GY P++W+ + N+ D +
Sbjct: 122 MAHIAQFYQSQLRTDEGQLAIDYLKGRGLSGEIVKKFAIGYVPDQWDLVRNRYGRDEASQ 181
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L G++++ + +RYDRFRGR+MFPI + G++IGFGGR++ D
Sbjct: 182 QALVDMGMLIEN-----------DNGRRYDRFRGRVMFPILDRRGRVIGFGGRVLGDGT- 229
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL + + +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 230 PKYLNSPETPIFHKGRELYGLHQVLETHREPERILVVEGYMDVVALAQFGVDYAVASLGT 289
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ TS HI+ + T++++ +DGD+AGR AA RA+E L Y D + +KF+FLPD DPD
Sbjct: 290 STTSEHIQTLFRQTSTVVCCYDGDRAGREAAWRAMEQALPYLLDGRELKFMFLPDGEDPD 349
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+YIR++G + F +V AMSL+ F + N++T + K + L + + +
Sbjct: 350 TYIRQYGKEEFEHQVSSAMSLIDFMFNSLTEQANMETKEGRSKLMTLAKPLIEKV-AGEA 408
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
LR +I+ L + + ++I + + + ++N++ + ++ LLI P
Sbjct: 409 LREYLINKLGYSLGLPPDQIR--LESKRPQQEKPRLVQQNLKRTPMR-DVVALLIQNPIF 465
Query: 358 INEINSED--------------MIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYL 403
+N++ + + I KC N QL+++ KN+ ++ +
Sbjct: 466 VNQLEFDTQAFEGIEVAGLNLLLTIVEKCRTNPNITTGQLLESWRGSKNEALLARLASWE 525
Query: 404 KKINKNFESII 414
++K+ +S +
Sbjct: 526 LPLSKDEDSTL 536
>gi|260773556|ref|ZP_05882472.1| DNA primase [Vibrio metschnikovii CIP 69.14]
gi|260612695|gb|EEX37898.1| DNA primase [Vibrio metschnikovii CIP 69.14]
Length = 587
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 122/277 (44%), Positives = 170/277 (61%), Gaps = 17/277 (6%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINT-LA 61
+ FY+ QLK + AI +LK RGL+ +I +F +GY P+EW+ + + F + L
Sbjct: 132 AQFYRQQLKTPAGRGAIEYLKDRGLSGDIAQQFGIGYVPDEWDLIRRNFGQHPQAQEMLV 191
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+ G++++ E KRYDRFRGR+MFPI++ G++IGFGGR+I + KY+
Sbjct: 192 TGGMLIEN-----------ESGKRYDRFRGRVMFPIRDRRGRVIGFGGRVIGNGT-PKYL 239
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETP+FHK ELYGL+E A +L+ EGYMDV+ L+Q+G VA LGTA T
Sbjct: 240 NSPETPIFHKGKELYGLYEVMQAHRDPVQILVVEGYMDVVALAQYGVDYAVASLGTATTG 299
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H++ + TN+++ +DGD+AGR AA RALE L Y I+KFLFLPD DPDSYIR
Sbjct: 300 DHLQLLFRQTNTVVCCYDGDRAGREAAWRALENALSYLKSGNILKFLFLPDGEDPDSYIR 359
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNY--NLKTIK 276
K G + F V A L + E +I + NL T++
Sbjct: 360 KHGKENFEHAVQHAKPLSSYLFENLIETHKLNLGTVE 396
>gi|297580651|ref|ZP_06942577.1| DNA primase [Vibrio cholerae RC385]
gi|297535067|gb|EFH73902.1| DNA primase [Vibrio cholerae RC385]
Length = 609
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 120/270 (44%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 149 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 208
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I D
Sbjct: 209 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITDQGT 256
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 257 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 316
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 317 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 376
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 377 SYVRKYGKADFEQQVANATPLSQYLFENLI 406
>gi|261250213|ref|ZP_05942789.1| DNA primase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|417953297|ref|ZP_12596344.1| DNA primase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260939329|gb|EEX95315.1| DNA primase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342817472|gb|EGU52353.1| DNA primase [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 585
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 147/427 (34%), Positives = 238/427 (55%), Gaps = 38/427 (8%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN 58
M + FY+ QLK SK AI++LK RGL+ +I+ +F +GY +EW+ + K F
Sbjct: 126 MGSIAQFYRDQLKQPKSKVAIDYLKDRGLSGQIVQKFGIGYVADEWDLVRKNFGQAPQTQ 185
Query: 59 T-LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L S G++++ +K RYDRFRGR+MFPI++ G++IGFGGR++ D
Sbjct: 186 EMLVSGGMLIEN-----------DKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVLGDGT- 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + VL+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 234 PKYLNSPETPIFHKGKELYGLYEVMQAYREPPKVLVVEGYMDVVALAQYGVDYSVASLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 294 STTGDHIQLLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLPDGEDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKS--KYNIEYLFKIIPLS 295
SY+RK G + F +++ +A L + + +I + L + KS + + L IP
Sbjct: 354 SYVRKHGKEAFEQQIEQATPLSSYLFDNLIEIHQLNLGGNEGKSALRAHASVLIDKIP-- 411
Query: 296 SSLRFKIISSLSKII--KVSF-NEINNLFKINTSS--IKHKTIEKKNIQPICIEYQIMKL 350
F+ + L K++ + F N++ K + S HK I++ ++ +++ L
Sbjct: 412 -DPYFQEL--LEKLLDERTGFDNQLRQPRKKQSESRPQPHKEIKRTPMR------EVIAL 462
Query: 351 LISYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNF 410
LI PS + D+ + + + +F ++++ H N I + I++ + N +
Sbjct: 463 LIQNPSYAQMV--PDLSSVRELTVPGLSLFVEVLEYCHQHPN-ITTGQLIEHWR--NSSH 517
Query: 411 ESIIVKI 417
E+++ ++
Sbjct: 518 EALLSRL 524
>gi|433656702|ref|YP_007274081.1| DNA primase [Vibrio parahaemolyticus BB22OP]
gi|432507390|gb|AGB08907.1| DNA primase [Vibrio parahaemolyticus BB22OP]
Length = 586
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 118/270 (43%), Positives = 174/270 (64%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +SK AI +LK RGL+ EI+ +F +GY +EWN + K F + +N
Sbjct: 127 MGSIAQFYRNQLKQPSSKVAIEYLKDRGLSGEIVQKFGIGYVADEWNLVRKNFGQNKDNQ 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ +K RYDRFRGRIMFPI++ G++IGFGGR++ +
Sbjct: 187 DMLVTGGMLIEN-----------DKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVLGEGT- 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAHREPAQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L + +KFLFLPD DPD
Sbjct: 295 STTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQFLKTGNTLKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F +++ +A L + + +I
Sbjct: 355 SYVRKYGKAAFEQQIEQATPLSSYLFDNLI 384
>gi|153827662|ref|ZP_01980329.1| DNA primase [Vibrio cholerae MZO-2]
gi|149737862|gb|EDM52767.1| DNA primase [Vibrio cholerae MZO-2]
Length = 609
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 149 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNFGQQRSSE 208
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 209 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 256
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 257 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGIDYSVASLGT 316
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 317 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 376
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 377 SYVRKYGKADFEQQVANATPLSQYLFENLI 406
>gi|421498804|ref|ZP_15945885.1| DNA primase [Aeromonas media WS]
gi|407182191|gb|EKE56167.1| DNA primase [Aeromonas media WS]
Length = 595
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 210/389 (53%), Gaps = 29/389 (7%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLASSGL 65
FY+ LKN+ +A+ +LK RGL E++ RFN+GYAP +W+ + + F ++ L S G+
Sbjct: 127 FYESNLKNAPQAVEYLKGRGLTGEVVKRFNIGYAPGDWDQVRRRFGASRDHEQLLISGGM 186
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPE 125
++ + + P YDRFR RIMFPI++ G++IGFGGR++ D KY+NSPE
Sbjct: 187 LIPR-----DSGP-----GSYDRFRDRIMFPIRDKRGRVIGFGGRVLGDGT-PKYLNSPE 235
Query: 126 TPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIK 185
TP+FHK EL+GL+E K A + +L+ EGYMDV+ L Q+ VA LGTA TS HI
Sbjct: 236 TPIFHKGRELFGLYEVKQAHKDPRRILVVEGYMDVVALGQYDIDYAVAALGTATTSDHIH 295
Query: 186 KILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGY 245
+ T ++ +DGD AGR AA RAL+ L + D + +KF+FLPD DPDS +R+ G
Sbjct: 296 TLFRTTAEVVCCYDGDNAGREAAWRALDNALSHLQDGRELKFVFLPDGEDPDSLVRQIGK 355
Query: 246 KIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNI----EYLFKIIPLSSSLRFK 301
+ F + EA F E + + L E K+ + L + +P R
Sbjct: 356 EGFEALLDEAQPFADFMFERLGRDAALSG----EAGKFEVANKAAELIRRVP-EGFTREG 410
Query: 302 IISSLSKIIKVSFNE--INNLFKINTSSIKHKTIEK-KNIQPICIEYQIMKLLISYPSLI 358
+I+ LS +++ N+ I LF N+ + K + PI + + L++ YP++
Sbjct: 411 LITRLSSMMRWGENKQRIAELFARNSQPKGEVSKPKAAKLTPI---RRALALMVQYPAVT 467
Query: 359 NEINSEDMIIFSKCSQNYVKMFFQLIDTI 387
E+ + M + +K QL I
Sbjct: 468 AELPA--MPELAGLRVQGIKFLLQLHQQI 494
>gi|229525181|ref|ZP_04414586.1| DNA primase [Vibrio cholerae bv. albensis VL426]
gi|229338762|gb|EEO03779.1| DNA primase [Vibrio cholerae bv. albensis VL426]
Length = 601
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 141 MGSIAQFYRQQLKIPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 200
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 201 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 248
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 249 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 308
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 309 STTGDHLQLLFRQTNHVICCYDGDRAGREAAWRALENALSYLKSGNILKFLFLPDGEDPD 368
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 369 SYVRKYGKADFEQQVANATPLSQYLFENLI 398
>gi|424658393|ref|ZP_18095650.1| DNA primase [Vibrio cholerae HE-16]
gi|408055115|gb|EKG90058.1| DNA primase [Vibrio cholerae HE-16]
Length = 587
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/270 (43%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K A+ +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 127 MGSIAQFYRQQLKVPANKHAVEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 187 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 295 STTGDHLQLLFRQTNHVICCYDGDRAGREAAWRALENALSYLKSGNILKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 355 SYVRKYGKADFEQQVANATPLSQYLFENLI 384
>gi|227080701|ref|YP_002809252.1| DNA primase [Vibrio cholerae M66-2]
gi|227116894|ref|YP_002818790.1| DNA primase [Vibrio cholerae O395]
gi|255744254|ref|ZP_05418207.1| DNA primase [Vibrio cholera CIRS 101]
gi|379740390|ref|YP_005332359.1| DNA primase [Vibrio cholerae IEC224]
gi|417812488|ref|ZP_12459148.1| DNA primase [Vibrio cholerae HC-49A2]
gi|417815350|ref|ZP_12461984.1| DNA primase [Vibrio cholerae HCUF01]
gi|418331493|ref|ZP_12942435.1| DNA primase [Vibrio cholerae HC-06A1]
gi|418336368|ref|ZP_12945267.1| DNA primase [Vibrio cholerae HC-23A1]
gi|418342749|ref|ZP_12949547.1| DNA primase [Vibrio cholerae HC-28A1]
gi|418347912|ref|ZP_12952648.1| DNA primase [Vibrio cholerae HC-43A1]
gi|418354309|ref|ZP_12957033.1| DNA primase [Vibrio cholerae HC-61A1]
gi|419824994|ref|ZP_14348500.1| DNA primase [Vibrio cholerae CP1033(6)]
gi|421315915|ref|ZP_15766487.1| DNA primase [Vibrio cholerae CP1032(5)]
gi|421319291|ref|ZP_15769850.1| DNA primase [Vibrio cholerae CP1038(11)]
gi|421323339|ref|ZP_15773868.1| DNA primase [Vibrio cholerae CP1041(14)]
gi|421327744|ref|ZP_15778260.1| DNA primase [Vibrio cholerae CP1042(15)]
gi|421330751|ref|ZP_15781233.1| DNA primase [Vibrio cholerae CP1046(19)]
gi|421334333|ref|ZP_15784802.1| DNA primase [Vibrio cholerae CP1048(21)]
gi|421338230|ref|ZP_15788668.1| DNA primase [Vibrio cholerae HC-20A2]
gi|421346615|ref|ZP_15796998.1| DNA primase [Vibrio cholerae HC-46A1]
gi|422890563|ref|ZP_16932979.1| DNA primase [Vibrio cholerae HC-40A1]
gi|422901430|ref|ZP_16936798.1| DNA primase [Vibrio cholerae HC-48A1]
gi|422905646|ref|ZP_16940497.1| DNA primase [Vibrio cholerae HC-70A1]
gi|422912250|ref|ZP_16946777.1| DNA primase [Vibrio cholerae HFU-02]
gi|422924729|ref|ZP_16957763.1| DNA primase [Vibrio cholerae HC-38A1]
gi|423144053|ref|ZP_17131668.1| DNA primase [Vibrio cholerae HC-19A1]
gi|423148757|ref|ZP_17136117.1| DNA primase [Vibrio cholerae HC-21A1]
gi|423152548|ref|ZP_17139747.1| DNA primase [Vibrio cholerae HC-22A1]
gi|423155330|ref|ZP_17142467.1| DNA primase [Vibrio cholerae HC-32A1]
gi|423159190|ref|ZP_17146163.1| DNA primase [Vibrio cholerae HC-33A2]
gi|423163876|ref|ZP_17150665.1| DNA primase [Vibrio cholerae HC-48B2]
gi|423730003|ref|ZP_17703322.1| DNA primase [Vibrio cholerae HC-17A1]
gi|423747371|ref|ZP_17711398.1| DNA primase [Vibrio cholerae HC-50A2]
gi|423891722|ref|ZP_17725413.1| DNA primase [Vibrio cholerae HC-62A1]
gi|423926499|ref|ZP_17730028.1| DNA primase [Vibrio cholerae HC-77A1]
gi|424001054|ref|ZP_17744144.1| DNA primase [Vibrio cholerae HC-17A2]
gi|424005214|ref|ZP_17748199.1| DNA primase [Vibrio cholerae HC-37A1]
gi|424023223|ref|ZP_17762888.1| DNA primase [Vibrio cholerae HC-62B1]
gi|424026025|ref|ZP_17765642.1| DNA primase [Vibrio cholerae HC-69A1]
gi|424585429|ref|ZP_18025023.1| DNA primase [Vibrio cholerae CP1030(3)]
gi|424589768|ref|ZP_18029215.1| DNA primase [Vibrio cholerae CP1037(10)]
gi|424594048|ref|ZP_18033387.1| DNA primase [Vibrio cholerae CP1040(13)]
gi|424597985|ref|ZP_18037185.1| DNA primase [Vibrio Cholerae CP1044(17)]
gi|424600746|ref|ZP_18039903.1| DNA primase [Vibrio cholerae CP1047(20)]
gi|424605640|ref|ZP_18044606.1| DNA primase [Vibrio cholerae CP1050(23)]
gi|424609478|ref|ZP_18048337.1| DNA primase [Vibrio cholerae HC-39A1]
gi|424612279|ref|ZP_18051087.1| DNA primase [Vibrio cholerae HC-41A1]
gi|424616155|ref|ZP_18054847.1| DNA primase [Vibrio cholerae HC-42A1]
gi|424620915|ref|ZP_18059445.1| DNA primase [Vibrio cholerae HC-47A1]
gi|424644013|ref|ZP_18081768.1| DNA primase [Vibrio cholerae HC-56A2]
gi|424651658|ref|ZP_18089183.1| DNA primase [Vibrio cholerae HC-57A2]
gi|424655605|ref|ZP_18092908.1| DNA primase [Vibrio cholerae HC-81A2]
gi|440708728|ref|ZP_20889389.1| DNA primase [Vibrio cholerae 4260B]
gi|443502554|ref|ZP_21069544.1| DNA primase [Vibrio cholerae HC-64A1]
gi|443506464|ref|ZP_21073257.1| DNA primase [Vibrio cholerae HC-65A1]
gi|443510573|ref|ZP_21077239.1| DNA primase [Vibrio cholerae HC-67A1]
gi|443514132|ref|ZP_21080674.1| DNA primase [Vibrio cholerae HC-68A1]
gi|443517946|ref|ZP_21084365.1| DNA primase [Vibrio cholerae HC-71A1]
gi|443522814|ref|ZP_21089056.1| DNA primase [Vibrio cholerae HC-72A2]
gi|443530431|ref|ZP_21096447.1| DNA primase [Vibrio cholerae HC-7A1]
gi|443534207|ref|ZP_21100121.1| DNA primase [Vibrio cholerae HC-80A1]
gi|443537785|ref|ZP_21103642.1| DNA primase [Vibrio cholerae HC-81A1]
gi|449054252|ref|ZP_21732920.1| DNA primase [Vibrio cholerae O1 str. Inaba G4222]
gi|227008589|gb|ACP04801.1| DNA primase [Vibrio cholerae M66-2]
gi|227012344|gb|ACP08554.1| DNA primase [Vibrio cholerae O395]
gi|255738194|gb|EET93586.1| DNA primase [Vibrio cholera CIRS 101]
gi|340043336|gb|EGR04295.1| DNA primase [Vibrio cholerae HCUF01]
gi|340043868|gb|EGR04825.1| DNA primase [Vibrio cholerae HC-49A2]
gi|341625432|gb|EGS50885.1| DNA primase [Vibrio cholerae HC-70A1]
gi|341626575|gb|EGS51946.1| DNA primase [Vibrio cholerae HC-48A1]
gi|341627083|gb|EGS52411.1| DNA primase [Vibrio cholerae HC-40A1]
gi|341641030|gb|EGS65602.1| DNA primase [Vibrio cholerae HFU-02]
gi|341648557|gb|EGS72609.1| DNA primase [Vibrio cholerae HC-38A1]
gi|356420520|gb|EHH74039.1| DNA primase [Vibrio cholerae HC-06A1]
gi|356421695|gb|EHH75187.1| DNA primase [Vibrio cholerae HC-21A1]
gi|356426186|gb|EHH79510.1| DNA primase [Vibrio cholerae HC-19A1]
gi|356433149|gb|EHH86342.1| DNA primase [Vibrio cholerae HC-23A1]
gi|356434714|gb|EHH87888.1| DNA primase [Vibrio cholerae HC-22A1]
gi|356437967|gb|EHH91032.1| DNA primase [Vibrio cholerae HC-28A1]
gi|356443148|gb|EHH95977.1| DNA primase [Vibrio cholerae HC-32A1]
gi|356448023|gb|EHI00808.1| DNA primase [Vibrio cholerae HC-43A1]
gi|356450317|gb|EHI03046.1| DNA primase [Vibrio cholerae HC-33A2]
gi|356454085|gb|EHI06740.1| DNA primase [Vibrio cholerae HC-61A1]
gi|356456395|gb|EHI09001.1| DNA primase [Vibrio cholerae HC-48B2]
gi|378793900|gb|AFC57371.1| DNA primase [Vibrio cholerae IEC224]
gi|395922656|gb|EJH33472.1| DNA primase [Vibrio cholerae CP1032(5)]
gi|395923184|gb|EJH33996.1| DNA primase [Vibrio cholerae CP1041(14)]
gi|395925616|gb|EJH36413.1| DNA primase [Vibrio cholerae CP1038(11)]
gi|395931478|gb|EJH42223.1| DNA primase [Vibrio cholerae CP1042(15)]
gi|395934604|gb|EJH45342.1| DNA primase [Vibrio cholerae CP1046(19)]
gi|395937442|gb|EJH48156.1| DNA primase [Vibrio cholerae CP1048(21)]
gi|395945350|gb|EJH56016.1| DNA primase [Vibrio cholerae HC-20A2]
gi|395946763|gb|EJH57423.1| DNA primase [Vibrio cholerae HC-46A1]
gi|395962929|gb|EJH73217.1| DNA primase [Vibrio cholerae HC-56A2]
gi|395963817|gb|EJH74069.1| DNA primase [Vibrio cholerae HC-57A2]
gi|395966646|gb|EJH76761.1| DNA primase [Vibrio cholerae HC-42A1]
gi|395975538|gb|EJH85027.1| DNA primase [Vibrio cholerae HC-47A1]
gi|395977572|gb|EJH86977.1| DNA primase [Vibrio cholerae CP1030(3)]
gi|395978966|gb|EJH88330.1| DNA primase [Vibrio cholerae CP1047(20)]
gi|408009740|gb|EKG47635.1| DNA primase [Vibrio cholerae HC-39A1]
gi|408016620|gb|EKG54154.1| DNA primase [Vibrio cholerae HC-41A1]
gi|408036477|gb|EKG72907.1| DNA primase [Vibrio cholerae CP1037(10)]
gi|408037186|gb|EKG73586.1| DNA primase [Vibrio cholerae CP1040(13)]
gi|408044858|gb|EKG80744.1| DNA primase [Vibrio Cholerae CP1044(17)]
gi|408046753|gb|EKG82422.1| DNA primase [Vibrio cholerae CP1050(23)]
gi|408057381|gb|EKG92232.1| DNA primase [Vibrio cholerae HC-81A2]
gi|408611265|gb|EKK84626.1| DNA primase [Vibrio cholerae CP1033(6)]
gi|408627379|gb|EKL00191.1| DNA primase [Vibrio cholerae HC-17A1]
gi|408641964|gb|EKL13727.1| DNA primase [Vibrio cholerae HC-50A2]
gi|408658568|gb|EKL29634.1| DNA primase [Vibrio cholerae HC-77A1]
gi|408659575|gb|EKL30614.1| DNA primase [Vibrio cholerae HC-62A1]
gi|408848809|gb|EKL88846.1| DNA primase [Vibrio cholerae HC-37A1]
gi|408849370|gb|EKL89391.1| DNA primase [Vibrio cholerae HC-17A2]
gi|408873567|gb|EKM12764.1| DNA primase [Vibrio cholerae HC-62B1]
gi|408881346|gb|EKM20242.1| DNA primase [Vibrio cholerae HC-69A1]
gi|439975824|gb|ELP51931.1| DNA primase [Vibrio cholerae 4260B]
gi|443432945|gb|ELS75465.1| DNA primase [Vibrio cholerae HC-64A1]
gi|443436880|gb|ELS82994.1| DNA primase [Vibrio cholerae HC-65A1]
gi|443440444|gb|ELS90131.1| DNA primase [Vibrio cholerae HC-67A1]
gi|443444541|gb|ELS97812.1| DNA primase [Vibrio cholerae HC-68A1]
gi|443448376|gb|ELT05009.1| DNA primase [Vibrio cholerae HC-71A1]
gi|443451150|gb|ELT11412.1| DNA primase [Vibrio cholerae HC-72A2]
gi|443458632|gb|ELT26027.1| DNA primase [Vibrio cholerae HC-7A1]
gi|443462514|gb|ELT33551.1| DNA primase [Vibrio cholerae HC-80A1]
gi|443466610|gb|ELT41267.1| DNA primase [Vibrio cholerae HC-81A1]
gi|448266249|gb|EMB03478.1| DNA primase [Vibrio cholerae O1 str. Inaba G4222]
Length = 587
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 127 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 187 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 295 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 355 SYVRKYGKADFEQQVANATPLSQYLFENLI 384
>gi|419829067|ref|ZP_14352556.1| DNA primase [Vibrio cholerae HC-1A2]
gi|419831847|ref|ZP_14355314.1| DNA primase [Vibrio cholerae HC-61A2]
gi|422916233|ref|ZP_16950574.1| DNA primase [Vibrio cholerae HC-02A1]
gi|423816191|ref|ZP_17715177.1| DNA primase [Vibrio cholerae HC-55C2]
gi|423848254|ref|ZP_17718963.1| DNA primase [Vibrio cholerae HC-59A1]
gi|423878833|ref|ZP_17722571.1| DNA primase [Vibrio cholerae HC-60A1]
gi|423996653|ref|ZP_17739919.1| DNA primase [Vibrio cholerae HC-02C1]
gi|424015354|ref|ZP_17755204.1| DNA primase [Vibrio cholerae HC-55B2]
gi|424018465|ref|ZP_17758267.1| DNA primase [Vibrio cholerae HC-59B1]
gi|424623835|ref|ZP_18062315.1| DNA primase [Vibrio cholerae HC-50A1]
gi|424628411|ref|ZP_18066720.1| DNA primase [Vibrio cholerae HC-51A1]
gi|424632370|ref|ZP_18070489.1| DNA primase [Vibrio cholerae HC-52A1]
gi|424635455|ref|ZP_18073479.1| DNA primase [Vibrio cholerae HC-55A1]
gi|424639369|ref|ZP_18077268.1| DNA primase [Vibrio cholerae HC-56A1]
gi|424647529|ref|ZP_18085209.1| DNA primase [Vibrio cholerae HC-57A1]
gi|443526388|ref|ZP_21092471.1| DNA primase [Vibrio cholerae HC-78A1]
gi|341640753|gb|EGS65332.1| DNA primase [Vibrio cholerae HC-02A1]
gi|408016120|gb|EKG53676.1| DNA primase [Vibrio cholerae HC-50A1]
gi|408021208|gb|EKG58473.1| DNA primase [Vibrio cholerae HC-52A1]
gi|408027076|gb|EKG64059.1| DNA primase [Vibrio cholerae HC-56A1]
gi|408027625|gb|EKG64587.1| DNA primase [Vibrio cholerae HC-55A1]
gi|408037004|gb|EKG73412.1| DNA primase [Vibrio cholerae HC-57A1]
gi|408058912|gb|EKG93688.1| DNA primase [Vibrio cholerae HC-51A1]
gi|408622256|gb|EKK95244.1| DNA primase [Vibrio cholerae HC-1A2]
gi|408636862|gb|EKL08984.1| DNA primase [Vibrio cholerae HC-55C2]
gi|408644127|gb|EKL15833.1| DNA primase [Vibrio cholerae HC-60A1]
gi|408645239|gb|EKL16900.1| DNA primase [Vibrio cholerae HC-59A1]
gi|408652254|gb|EKL23479.1| DNA primase [Vibrio cholerae HC-61A2]
gi|408854558|gb|EKL94311.1| DNA primase [Vibrio cholerae HC-02C1]
gi|408862067|gb|EKM01619.1| DNA primase [Vibrio cholerae HC-55B2]
gi|408870011|gb|EKM09293.1| DNA primase [Vibrio cholerae HC-59B1]
gi|443455237|gb|ELT19021.1| DNA primase [Vibrio cholerae HC-78A1]
Length = 587
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 127 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 187 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 295 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 355 SYVRKYGKADFEQQVANATPLSQYLFENLI 384
>gi|262172394|ref|ZP_06040072.1| DNA primase [Vibrio mimicus MB-451]
gi|424809497|ref|ZP_18234874.1| DNA primase [Vibrio mimicus SX-4]
gi|261893470|gb|EEY39456.1| DNA primase [Vibrio mimicus MB-451]
gi|342322985|gb|EGU18771.1| DNA primase [Vibrio mimicus SX-4]
Length = 587
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/275 (42%), Positives = 175/275 (63%), Gaps = 15/275 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK N++ AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 127 MGSIAQFYRQQLKQPNNRHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNFGQQRSSE 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 187 DMLVTAGMLIES-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN ++ +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 295 STTGDHLQLLFRQTNQVVCCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
SY+RK+G F +++ A L Q+ + +I + L
Sbjct: 355 SYVRKYGKADFEQQLANATPLSQYLFDNLIELHQL 389
>gi|229507129|ref|ZP_04396635.1| DNA primase [Vibrio cholerae BX 330286]
gi|229509008|ref|ZP_04398496.1| DNA primase [Vibrio cholerae B33]
gi|229519676|ref|ZP_04409119.1| DNA primase [Vibrio cholerae RC9]
gi|229606192|ref|YP_002876840.1| DNA primase [Vibrio cholerae MJ-1236]
gi|229344365|gb|EEO09340.1| DNA primase [Vibrio cholerae RC9]
gi|229353933|gb|EEO18867.1| DNA primase [Vibrio cholerae B33]
gi|229355874|gb|EEO20794.1| DNA primase [Vibrio cholerae BX 330286]
gi|229368847|gb|ACQ59270.1| DNA primase [Vibrio cholerae MJ-1236]
Length = 601
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 141 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 200
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 201 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 248
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 249 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 308
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 309 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 368
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 369 SYVRKYGKADFEQQVANATPLSQYLFENLI 398
>gi|258623541|ref|ZP_05718542.1| DNA primase [Vibrio mimicus VM573]
gi|258584203|gb|EEW08951.1| DNA primase [Vibrio mimicus VM573]
Length = 591
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/275 (42%), Positives = 175/275 (63%), Gaps = 15/275 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK N++ AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 131 MGSIAQFYRQQLKQPNNRHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNFGQQRSSE 190
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 191 DMLVTAGMLIES-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 238
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 239 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 298
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN ++ +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 299 STTGDHLQLLFRQTNQVVCCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 358
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
SY+RK+G F +++ A L Q+ + +I + L
Sbjct: 359 SYVRKYGKADFEQQLANATPLSQYLFDNLIELHQL 393
>gi|229512572|ref|ZP_04402043.1| DNA primase [Vibrio cholerae TMA 21]
gi|229530332|ref|ZP_04419720.1| DNA primase [Vibrio cholerae 12129(1)]
gi|229332105|gb|EEN97593.1| DNA primase [Vibrio cholerae 12129(1)]
gi|229350465|gb|EEO15414.1| DNA primase [Vibrio cholerae TMA 21]
Length = 601
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 141 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 200
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 201 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 248
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 249 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 308
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 309 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 368
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 369 SYVRKYGKADFEQQVANATPLSQYLFENLI 398
>gi|209363782|ref|YP_001423815.2| DNA primase [Coxiella burnetii Dugway 5J108-111]
gi|207081715|gb|ABS78269.2| DNA primase [Coxiella burnetii Dugway 5J108-111]
Length = 572
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 203/365 (55%), Gaps = 24/365 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
S FY+ +LK S AI++LK RGL E RF +GYAPN W L + + L + G
Sbjct: 140 SRFYQRELKRSPTAIHYLKSRGLTGETAKRFAIGYAPNAWENLRPFAKNSKTQSQLVTHG 199
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+V K + + +DRFR RIMFPI++ G++I FGGR + + + KY+NSP
Sbjct: 200 LLVKK------------ENRCFDRFRHRIMFPIRDVRGRVIAFGGRSVGE-DLPKYMNSP 246
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ETPLF K NELYGL EA LI EGYMDV+ L Q G VA LGTA + H+
Sbjct: 247 ETPLFQKGNELYGLHEACKTHRPLPRALIVEGYMDVVSLHQHGITYAVATLGTATSVRHL 306
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+K+L YT+ II+ FDGD AGR+AA RAL L + I+FLFLP DPDS I+K G
Sbjct: 307 QKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDSLIQKIG 366
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK-II 303
+ F K+ +A L + F + +++I D K+ + + L + P+ + ++ ++
Sbjct: 367 REAFENKIDQAPPLSEVFFSHLQKEIPIRSIDD--KAAFAKQALEHLRPMPRGIFYQLLL 424
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEINS 363
L++ + + +E+++L ++ + + + + Y + +L PSL++ I
Sbjct: 425 EELAQRLTLDLSELDSL------TVAPPPMPAASTRVPSLAYHALSILAQAPSLVSVI-- 476
Query: 364 EDMII 368
+DM I
Sbjct: 477 QDMTI 481
>gi|419835444|ref|ZP_14358889.1| DNA primase [Vibrio cholerae HC-46B1]
gi|421342206|ref|ZP_15792613.1| DNA primase [Vibrio cholerae HC-43B1]
gi|423733807|ref|ZP_17707023.1| DNA primase [Vibrio cholerae HC-41B1]
gi|424008091|ref|ZP_17751041.1| DNA primase [Vibrio cholerae HC-44C1]
gi|395945709|gb|EJH56374.1| DNA primase [Vibrio cholerae HC-43B1]
gi|408631810|gb|EKL04333.1| DNA primase [Vibrio cholerae HC-41B1]
gi|408858857|gb|EKL98527.1| DNA primase [Vibrio cholerae HC-46B1]
gi|408866378|gb|EKM05761.1| DNA primase [Vibrio cholerae HC-44C1]
Length = 587
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 171/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 127 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I D
Sbjct: 187 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITDQGT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQVYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 295 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 355 SYVRKYGKADFEQQVANATPLSQYLFENLI 384
>gi|260902498|ref|ZP_05910893.1| DNA primase [Vibrio parahaemolyticus AQ4037]
gi|308109801|gb|EFO47341.1| DNA primase [Vibrio parahaemolyticus AQ4037]
Length = 586
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 174/270 (64%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +SK AI +LK RGL+ EI+ +F +GY +EW+ + K F + +N
Sbjct: 127 MGSIAQFYRNQLKQPSSKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQNKDNQ 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ +K RYDRFRGRIMFPI++ G++IGFGGR++ +
Sbjct: 187 DMLVTGGMLIEN-----------DKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVLGEGT- 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAHREPAQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L + +KFLFLPD DPD
Sbjct: 295 STTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQFLKTGNTLKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F +++ +A L + + +I
Sbjct: 355 SYVRKYGKAAFEQQIEQATPLSSYLFDNLI 384
>gi|262164052|ref|ZP_06031791.1| DNA primase [Vibrio mimicus VM223]
gi|262027580|gb|EEY46246.1| DNA primase [Vibrio mimicus VM223]
Length = 587
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/275 (42%), Positives = 174/275 (63%), Gaps = 15/275 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK N++ AI +LK RGL+ EI+ +F +GY +EW+ + + F N+
Sbjct: 127 MGSIAQFYRQQLKQPNNRHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNFGQQRNSE 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 187 DMLVTAGMLIES-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN ++ +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 295 STTGDHLQLLFRQTNQVVCCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
SY+RK+G +++ A L Q+ + +I + L
Sbjct: 355 SYVRKYGKADLEQQLANATPLSQYLFDNLIELHQL 389
>gi|153214932|ref|ZP_01949715.1| DNA primase [Vibrio cholerae 1587]
gi|124115005|gb|EAY33825.1| DNA primase [Vibrio cholerae 1587]
Length = 609
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 149 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 208
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 209 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 256
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 257 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 316
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 317 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 376
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 377 SYVRKYGKADFEQQVANATPLSQYLFENLI 406
>gi|121591709|ref|ZP_01678934.1| DNA primase [Vibrio cholerae 2740-80]
gi|121728935|ref|ZP_01681941.1| DNA primase [Vibrio cholerae V52]
gi|147674914|ref|YP_001216018.1| DNA primase [Vibrio cholerae O395]
gi|254850757|ref|ZP_05240107.1| DNA primase [Vibrio cholerae MO10]
gi|298500979|ref|ZP_07010780.1| DNA primase [Vibrio cholerae MAK 757]
gi|360037142|ref|YP_004938905.1| DNA primase [Vibrio cholerae O1 str. 2010EL-1786]
gi|121546431|gb|EAX56666.1| DNA primase [Vibrio cholerae 2740-80]
gi|121628783|gb|EAX61247.1| DNA primase [Vibrio cholerae V52]
gi|146316797|gb|ABQ21336.1| DNA primase [Vibrio cholerae O395]
gi|254846462|gb|EET24876.1| DNA primase [Vibrio cholerae MO10]
gi|297540227|gb|EFH76287.1| DNA primase [Vibrio cholerae MAK 757]
gi|356648296|gb|AET28351.1| DNA primase [Vibrio cholerae O1 str. 2010EL-1786]
Length = 609
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 149 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 208
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 209 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 256
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 257 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 316
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 317 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 376
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F ++V A L Q+ E +I
Sbjct: 377 SYVRKYGKADFEQQVANATPLSQYLFENLI 406
>gi|256823390|ref|YP_003147353.1| DNA primase [Kangiella koreensis DSM 16069]
gi|256796929|gb|ACV27585.1| DNA primase [Kangiella koreensis DSM 16069]
Length = 592
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 213/389 (54%), Gaps = 19/389 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+++Y+ QLKN+K AI++LK RGL+ EI +F +GY P EW L VF L
Sbjct: 120 ANYYQKQLKNNKAAIDYLKSRGLSGEIAKQFAIGYVPGEWRNLETVFPKLQQDKKLQQQL 179
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
+ +I K YDRFR RIMFPIK+ G++I FGGR++ E KY+NSP
Sbjct: 180 VDCGMLIRK--------DKSLYDRFRDRIMFPIKDKRGRVIAFGGRVM-GQGEPKYLNSP 230
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ETP+FHKSNELYGL++A+ A K +LI EGYMDV+ L+QF VA LGTA TS+H+
Sbjct: 231 ETPIFHKSNELYGLYQARQANRKLSRLLIVEGYMDVVALAQFDINYAVATLGTATTSSHL 290
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+++ ++ FDGD+AGR AA RALE L + + I+ +FLPD DPDS +RK G
Sbjct: 291 QQLFRAARELVLCFDGDRAGRDAALRALEHGLSQMREGREIRLMFLPDGEDPDSMVRKVG 350
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIE-YLFKII-PLSSSLRFKI 302
+ F + + EA L +F LE + +L ++ + + + YL KI P+
Sbjct: 351 KEQFEQMIGEATPLFEFILEHLSSQVDLGSVSGRGQLVHLAKPYLDKITDPIYHEF---F 407
Query: 303 ISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQI---MKLLISYPSLIN 359
S+L++ +S +++ + + T + EK Q + + LL+ PSL
Sbjct: 408 SSALAEKANLSESKLAAIIEAPTQPQHPRKPEKSTPQSPKANKTLQLAITLLLQQPSLAL 467
Query: 360 EINSEDMIIFSKCSQNYVKMFFQLIDTIH 388
IN+ + K+ QL++ IH
Sbjct: 468 AINNYGWL--QTLPDKGSKLLHQLLEIIH 494
>gi|28897179|ref|NP_796784.1| DNA primase [Vibrio parahaemolyticus RIMD 2210633]
gi|153839253|ref|ZP_01991920.1| DNA primase [Vibrio parahaemolyticus AQ3810]
gi|260361471|ref|ZP_05774530.1| DNA primase [Vibrio parahaemolyticus K5030]
gi|260878084|ref|ZP_05890439.1| DNA primase [Vibrio parahaemolyticus AN-5034]
gi|260896979|ref|ZP_05905475.1| DNA primase [Vibrio parahaemolyticus Peru-466]
gi|28805388|dbj|BAC58668.1| DNA primase [Vibrio parahaemolyticus RIMD 2210633]
gi|149747218|gb|EDM58206.1| DNA primase [Vibrio parahaemolyticus AQ3810]
gi|308088718|gb|EFO38413.1| DNA primase [Vibrio parahaemolyticus Peru-466]
gi|308090022|gb|EFO39717.1| DNA primase [Vibrio parahaemolyticus AN-5034]
gi|308110979|gb|EFO48519.1| DNA primase [Vibrio parahaemolyticus K5030]
Length = 586
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 174/270 (64%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +SK AI +LK RGL+ EI+ +F +GY +EW+ + K F + +N
Sbjct: 127 MGSIAQFYRNQLKQPSSKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQNKDNQ 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ +K RYDRFRGRIMFPI++ G++IGFGGR++ +
Sbjct: 187 DMLVTGGMLIEN-----------DKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVLGEGT- 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAHREPAQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L + +KFLFLPD DPD
Sbjct: 295 STTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQFLKTGNTLKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F +++ +A L + + +I
Sbjct: 355 SYVRKYGKAAFEQQIEQATPLSSYLFDNLI 384
>gi|399116769|emb|CCG19578.1| DNA primase [Taylorella asinigenitalis 14/45]
Length = 593
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 229/396 (57%), Gaps = 30/396 (7%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A FY S EA ++++KRGL++E I +F +G++ +E+ L F +Y++ L
Sbjct: 124 AQSFYIDMFAKSHEAKSYIEKRGLSDETIKKFGIGWSGSEYRNLAHKFPNYDD-KILVDV 182
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+ K E +YDRFR R+MFPI N GQIIGFGGR + D + KY+NS
Sbjct: 183 GLVIQK-----------EDSSKYDRFRNRVMFPILNDRGQIIGFGGRTLGDE-KPKYLNS 230
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHKS+ELYGLFE K I S L+ EGYMDVI L+Q G VA LGTA + +H
Sbjct: 231 PETEVFHKSDELYGLFENKKGINTSKKALVVEGYMDVISLNQHGIEFAVATLGTATSQSH 290
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+ YT+ IIF FDGD+AG+ AA +AL LL + ++FLFLP +DPDSYIR+F
Sbjct: 291 LRKLYRYTSKIIFCFDGDEAGKNAAWKALNESLLVLDERHELRFLFLPSDHDPDSYIREF 350
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP--LSSSLRFK 301
G F+K + ++SL +F+L E+ + L + E I ++ ++ S+++ +
Sbjct: 351 GRAKFTKFIESSLSLTKFWLNELKSRFRL---DEAEGRASCINFVRPMLRNVRKSAMKTQ 407
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKH---KTIEKKNI-QPI------CIEYQIMKLL 351
I ++ +++++ E I+ K I K++ QP +E + +KL+
Sbjct: 408 IEREIASLLQLTHEEFLKDLGIDFQGAKKTFPAQISKRSFSQPKVRKQVESLERKFIKLV 467
Query: 352 ISYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTI 387
PS+ N+I+S ++++F Y ++ ++LI I
Sbjct: 468 AMKPSITNKISS-NVLVFLNLLPKY-RLVYELITLI 501
>gi|417321268|ref|ZP_12107808.1| DNA primase [Vibrio parahaemolyticus 10329]
gi|328471948|gb|EGF42825.1| DNA primase [Vibrio parahaemolyticus 10329]
Length = 586
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 174/270 (64%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +SK AI +LK RGL+ EI+ +F +GY +EW+ + K F + +N
Sbjct: 127 MGSIAQFYRNQLKQPSSKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQNKDNQ 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ +K RYDRFRGRIMFPI++ G++IGFGGR++ +
Sbjct: 187 DMLVTGGMLIEN-----------DKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVLGEGT- 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAHREPAQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L + +KFLFLPD DPD
Sbjct: 295 STTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQFLKTGNTLKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SY+RK+G F +++ +A L + + +I
Sbjct: 355 SYVRKYGKAAFEQQIEQATPLSSYLFDNLI 384
>gi|348590103|ref|YP_004874565.1| DNA primase [Taylorella asinigenitalis MCE3]
gi|347974007|gb|AEP36542.1| DNA primase [Taylorella asinigenitalis MCE3]
Length = 593
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 229/396 (57%), Gaps = 30/396 (7%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A FY S EA ++++KRGL++E I +F +G++ +E+ L F +Y++ L
Sbjct: 124 AQSFYIDMFAKSHEAKSYIEKRGLSDETIKKFGIGWSGSEYRNLAHKFPNYDD-KILVDV 182
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+ K E +YDRFR R+MFPI N GQIIGFGGR + D + KY+NS
Sbjct: 183 GLVIQK-----------EDSSKYDRFRNRVMFPILNDRGQIIGFGGRTLGD-EKPKYLNS 230
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHKS+ELYGLFE K I S L+ EGYMDVI L+Q G VA LGTA + +H
Sbjct: 231 PETEVFHKSDELYGLFENKKGINTSKKALVVEGYMDVISLNQHGIDFAVATLGTATSQSH 290
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++K+ YT+ IIF FDGD+AG+ AA +AL LL + ++FLFLP +DPDSYIR+F
Sbjct: 291 LRKLYRYTSKIIFCFDGDEAGKNAAWKALNESLLVLDERHELRFLFLPSDHDPDSYIREF 350
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP--LSSSLRFK 301
G F+K + ++SL +F+L E+ + L + E I ++ ++ S+++ +
Sbjct: 351 GRAKFTKFIESSLSLTKFWLNELKSRFRL---DEAEGRASCINFVRPMLRNVRKSAMKTQ 407
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKH---KTIEKKNI-QPI------CIEYQIMKLL 351
I ++ +++++ E I+ K I K++ QP +E + +KL+
Sbjct: 408 IEREIASLLQLTHEEFLKDLGIDFEGAKKTFPAQISKRSFSQPKVRKQVESLERKFIKLV 467
Query: 352 ISYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTI 387
PS+ N+I+S ++++F Y ++ ++LI I
Sbjct: 468 AMKPSITNKISS-NVLVFLNLLPKY-RLVYELITLI 501
>gi|331006376|ref|ZP_08329685.1| DNA primase [gamma proteobacterium IMCC1989]
gi|330419800|gb|EGG94157.1| DNA primase [gamma proteobacterium IMCC1989]
Length = 676
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/279 (42%), Positives = 176/279 (63%), Gaps = 13/279 (4%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M +D+Y++QL+ + +N+LK RGL+ +I F +GYAP W+ L K N
Sbjct: 125 MEQTNDYYQLQLREHPQKNTPVNYLKNRGLSGQIAKDFGVGYAPPGWDNLIKTLATSNEK 184
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L G + +IN + K + YDRFR RIMFPI+++ G++IGFGGR++ D +
Sbjct: 185 QDLLLEGGM---LINNED------KGRLYDRFRERIMFPIRDSRGRVIGFGGRVLNDE-K 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+F K ELYGL+EA+ A + VL+ EGYMDV+ L+Q+G VA LGT
Sbjct: 235 PKYLNSPETPIFFKGKELYGLYEARQAYRQLPRVLVVEGYMDVVALAQYGIRYGVATLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
AC+ H++ YTN ++F FDGD AGR+AARRA+E + D + IKFL+LP+ DPD
Sbjct: 295 ACSEEHLRIAFKYTNEVVFCFDGDDAGRKAARRAMENSITSMEDGRQIKFLYLPEGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIK 276
+ +R+ G + F+K + A L F EE+ +++ +T++
Sbjct: 355 TLVRQIGDEKFTKLIEGASPLENFLFEELGQSFDTQTME 393
>gi|381395832|ref|ZP_09921526.1| DNA primase [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379328397|dbj|GAB56659.1| DNA primase [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 589
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 136/367 (37%), Positives = 216/367 (58%), Gaps = 28/367 (7%)
Query: 7 FYKIQLKNSKEA---INFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
+++ QLK+ K A I++LK RGL+ +++ + +GYAP EW+AL F + + A
Sbjct: 128 YFEYQLKHHKNAPQIIDYLKNRGLSGKVVKHWGIGYAPQEWDALLSKFGN----DAPAVE 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
L+ K++N+ + +RYD FR R+MFPI + G+++ FGGR+I D KY+NS
Sbjct: 184 RLLALKVVNQNDNK------RRYDFFRHRVMFPIHDKRGRVVAFGGRIIDDEG-PKYLNS 236
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHKS ELYGL++++ A K +++ EGYMDV+ LSQFG +VA LGTA T H
Sbjct: 237 PETRIFHKSYELYGLYQSRQANRKLERLMVVEGYMDVVALSQFGIDYSVAALGTATTPDH 296
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+ ++ +DGD+AGR AA RALE L + D KI+KFLFLPD DPDS +RK
Sbjct: 297 IQTLFKSTSEVVCCYDGDRAGREAAWRALENALPFLQDGKIMKFLFLPDGEDPDSMVRKI 356
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F + EA L FF + +I +++ +I+ + K L K I L + R ++
Sbjct: 357 GKEAFETLISEAKPLSGFFFDALIKKHSIASIEGMAALKAEAMPLIKQI-LGENQRTMMM 415
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--------IQPICIEYQIMKLLISYP 355
+ L K+ K + ++ + KH+ I++ + + P+ + I++LL+ P
Sbjct: 416 AQLKKVCKE--GDGHDYDADTKHANKHRKIKRTDYKSPANIVLSPLRM---IIRLLLESP 470
Query: 356 SLINEIN 362
L + ++
Sbjct: 471 RLASSVD 477
>gi|424042513|ref|ZP_17780217.1| DNA primase, partial [Vibrio cholerae HENC-02]
gi|408889496|gb|EKM27909.1| DNA primase, partial [Vibrio cholerae HENC-02]
Length = 381
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/267 (44%), Positives = 172/267 (64%), Gaps = 15/267 (5%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK SK AI +LK RGL+ EI+ +F +GY +EW+ + K F + +N
Sbjct: 127 MGSIAQFYRNQLKQPTSKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQNKDNQ 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ +K RYDRFRGRIMFPI++ G++IGFGGR++ D
Sbjct: 187 DMLVTGGMLIEN-----------DKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVLGDGT- 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPRILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 295 STTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLE 264
SY+RK+G + F +++ +A L + +
Sbjct: 355 SYVRKYGKQAFEQQIEQATPLSSYLFD 381
>gi|334705855|ref|ZP_08521721.1| DNA primase [Aeromonas caviae Ae398]
Length = 595
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/364 (35%), Positives = 202/364 (55%), Gaps = 25/364 (6%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLASSGL 65
FY+ LKN+ +A+ +LK RGL E++ RFN+GYAP +W+ + + F ++ L S G+
Sbjct: 127 FYESNLKNAPQAVEYLKGRGLTGEVVKRFNIGYAPGDWDQVRRRFGASRDHEQLLISGGM 186
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPE 125
++ + + P YDRFR RIMFPI++ G++IGFGGR++ D KY+NSPE
Sbjct: 187 LIPR-----DSGP-----GSYDRFRDRIMFPIRDKRGRVIGFGGRVLGDGT-PKYLNSPE 235
Query: 126 TPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIK 185
TP+FHK EL+GL+E K A + +L+ EGYMDV+ L Q+ VA LGTA TS HI
Sbjct: 236 TPIFHKGRELFGLYEVKQAHKDPRRILVVEGYMDVVALGQYDIDYAVAALGTATTSDHIH 295
Query: 186 KILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGY 245
+ T ++ +DGD AGR AA RAL+ L + D + +KF+FLPD DPDS +R+ G
Sbjct: 296 TLFRTTAEVVCCYDGDNAGREAAWRALDNALSHLQDGRELKFVFLPDGEDPDSLVRQIGK 355
Query: 246 KIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNI----EYLFKIIPLSSSLRFK 301
+ F + +A S F E + + L E K+ + L + +P R
Sbjct: 356 EGFEALLDKAQSFADFMFERLGRDAALSG----EAGKFEVANKAAELIRRVP-EGFTREG 410
Query: 302 IISSLSKIIKVSFNE--INNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLIN 359
+I+ LS +++ N+ I LF N+ + K + + + L++ YP++
Sbjct: 411 LITRLSSMMRWGENKQRIAELFARNSQP--KAEVNKPKATKLTPIRRALALMVQYPAITA 468
Query: 360 EINS 363
E+ +
Sbjct: 469 ELPA 472
>gi|444379031|ref|ZP_21178216.1| DNA primase [Enterovibrio sp. AK16]
gi|443676868|gb|ELT83564.1| DNA primase [Enterovibrio sp. AK16]
Length = 584
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 208/367 (56%), Gaps = 20/367 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLA 61
+ FY+ L+N K AI++LK RGL+ EI+ +F +GY +EW+ + F D + L
Sbjct: 128 AQFYQGGLRNEAGKIAIDYLKGRGLSGEIVQKFGIGYVADEWDQVRSRFGRDNTSQQALV 187
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
S+G++++ + +RYDRFRGR+MFPI++ G++IGFGGR+I D KY+
Sbjct: 188 STGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGRVIGDGT-PKYL 235
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L QFG VA LGTA T+
Sbjct: 236 NSPETPIFHKGRELYGLYEVLQAHREPKQLLVVEGYMDVVALGQFGIDYAVASLGTATTA 295
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H++ + T+++I +DGD+AGR AA RA+E L + D + +KF+FLPD DPDS +R
Sbjct: 296 EHMQTMFRQTSNVICCYDGDRAGRDAAWRAMEQALPHLVDGRQLKFMFLPDGEDPDSMVR 355
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
+ G + F +++ AMSL +F ++ + + + K L +P +LR
Sbjct: 356 QEGKEGFEQRLAGAMSLSEFLFNTLMEQVDTSSQEGKAKLTTLAVPLIDKVP-GGTLRLY 414
Query: 302 IISSLSKIIKVS-FNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
+ + L + + + ++ L + K + + + P+ +++ LL+ P +
Sbjct: 415 LRNILGQKLGLPDEQQLEKLISRQGQTQKRQPLPEMKRTPM---REVITLLLQNPGFVEN 471
Query: 361 INSEDMI 367
+ D +
Sbjct: 472 VPPLDGV 478
>gi|148979374|ref|ZP_01815480.1| DNA primase [Vibrionales bacterium SWAT-3]
gi|145961810|gb|EDK27103.1| DNA primase [Vibrionales bacterium SWAT-3]
Length = 583
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/414 (34%), Positives = 225/414 (54%), Gaps = 36/414 (8%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI- 57
M S FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + K F
Sbjct: 124 MGAISQFYRSQLKIAANKPAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRKNFGQQKEAQ 183
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L + G++++ +K RYDRFRGR+MFPI++ G++IGFGGR+++D
Sbjct: 184 DMLVTGGMLIEN-----------DKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVLEDGT- 231
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + VL+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 232 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQVLVVEGYMDVVALAQYGVDYSVASLGT 291
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + T+++I +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 292 STTGDHIQMLFRQTSTVICCYDGDRAGKEAAWRALENALEYLKTGNTLKFLFLPDGEDPD 351
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEI--ILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
SYIR+ G F + V A L + + + I NL T + + + L IP S
Sbjct: 352 SYIREHGKAAFEQLVQNATPLSTYLFDNLIEIHKLNLGTTEGKSALRAHASALINKIPDS 411
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKI-----NTSSIKHKTIEKKNIQPICIEYQIMKL 350
F+ + L K++ N L + N + HK +++ ++ +++ L
Sbjct: 412 Y---FQEL--LEKLLDERTGFDNQLRRARVHTQNPTPQPHKELKRTPMR------EVIAL 460
Query: 351 LISYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK 404
LI PS + + D+ + +F +++D H + I+ + +++ +
Sbjct: 461 LIQNPSYADMV--PDLSSVKGLPLPGLSLFVEVLDKCHAHPH-INTGQLLEHWR 511
>gi|218708435|ref|YP_002416056.1| DNA primase [Vibrio splendidus LGP32]
gi|218321454|emb|CAV17406.1| DNA primase [Vibrio splendidus LGP32]
Length = 583
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/410 (34%), Positives = 226/410 (55%), Gaps = 36/410 (8%)
Query: 5 SDFYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI-NTLA 61
S+FY+ QLK S K AI++LK RGL+ EI+ +F +GY +EW+ + K F + L
Sbjct: 128 SNFYRSQLKISANKPAIDYLKNRGLSGEIVQKFGIGYVADEWDLVRKNFGQQKEAQDMLV 187
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+ G++++ +K RYDRFRGR+MFPI++ G++IGFGGR+++D KY+
Sbjct: 188 TGGMLIEN-----------DKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVLEDGT-PKYL 235
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT+ T
Sbjct: 236 NSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGTSTTG 295
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H++ + T++++ +DGD+AG+ AA RALE L Y +KFLFLPD DPDSYIR
Sbjct: 296 DHVQMLFRQTSTVVCCYDGDRAGKEAAWRALENALEYLKTGNTLKFLFLPDGEDPDSYIR 355
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEI--ILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
+ G F + V A L + + + I NL T + + + L IP S
Sbjct: 356 EHGQAAFEQLVHNATPLSTYLFDNLIEIHKLNLGTTEGKSALRAHASALINKIPDSY--- 412
Query: 300 FKIISSLSKIIKVSFNEINNLFKI-----NTSSIKHKTIEKKNIQPICIEYQIMKLLISY 354
F+ + L K++ N L + N + HK +++ ++ +++ LLI
Sbjct: 413 FQEL--LEKLLDERTGFDNQLRRARVHTKNPTPQPHKELKRTPMR------EVIALLIQN 464
Query: 355 PSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK 404
PS + + D+ + +F +++D H + I+ + +++ +
Sbjct: 465 PSYADMV--PDLSSVKGLQLPGLSLFVEVLDKCHAHPH-INTGQLLEHWR 511
>gi|423199784|ref|ZP_17186366.1| DNA primase [Aeromonas hydrophila SSU]
gi|404628862|gb|EKB25633.1| DNA primase [Aeromonas hydrophila SSU]
Length = 595
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 200/364 (54%), Gaps = 25/364 (6%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA-SSGL 65
FY+ LKN+ +A+ +LK RGL E++ RFN+GYAP +W+ + + F L S G+
Sbjct: 127 FYESNLKNAPQAVEYLKGRGLTGEVVKRFNIGYAPGDWDQVRRRFGSAREHEQLLISGGM 186
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPE 125
++ + + P YDRFR RIMFPI++ G++IGFGGR++ D KY+NSPE
Sbjct: 187 LIPR-----DSGP-----GSYDRFRDRIMFPIRDKRGRVIGFGGRVLGDGT-PKYLNSPE 235
Query: 126 TPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIK 185
TP+FHK EL+GL+E K A ++ +L+ EGYMDV+ L Q+ VA LGTA TS HI
Sbjct: 236 TPIFHKGRELFGLYEVKQAHKEPRRILVVEGYMDVVALGQYDIDYAVAALGTATTSDHIH 295
Query: 186 KILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGY 245
+ T ++ +DGD AGR AA RAL+ L + D + +KF+FLPD DPDS +R+ G
Sbjct: 296 TLFRTTAEVVCCYDGDNAGREAAWRALDNALSHLQDGRELKFVFLPDGEDPDSLVRQIGK 355
Query: 246 KIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNI----EYLFKIIPLSSSLRFK 301
+ F + +A F E + + L E K+ + L + +P R
Sbjct: 356 EGFEALLDQAQPFADFMFERLGRDAALSG----EAGKFEVANKAAELIRRVP-EGFTREG 410
Query: 302 IISSLSKIIKVSFNE--INNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLIN 359
+I+ LS +++ N+ I LF N+ + K + + + L++ YP++
Sbjct: 411 LITRLSSMMRWGENKQRIAELFARNSQP--KAEVSKPKAAKLTPLRRALALMVQYPAITA 468
Query: 360 EINS 363
E+ +
Sbjct: 469 ELPA 472
>gi|89075586|ref|ZP_01161991.1| DNA primase [Photobacterium sp. SKA34]
gi|89048726|gb|EAR54298.1| DNA primase [Photobacterium sp. SKA34]
Length = 585
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/388 (34%), Positives = 217/388 (55%), Gaps = 19/388 (4%)
Query: 1 MICASDFYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M S FY+ QL K + A+++LK RGL+ EI+ +F++G+ P++W+ + F D +
Sbjct: 122 MGQVSQFYQSQLRTKEGEIAVDYLKGRGLSGEIVKKFSIGFIPDQWDMVRSRFGRDNESQ 181
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L ++GL+++ + +RYDRFRGR+MFPI + G++IGFGGR++ D
Sbjct: 182 KALVNTGLLIEN-----------DNGRRYDRFRGRVMFPIHDRRGRVIGFGGRVLGDGT- 229
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYG +E + +++ EGYMDV+ L+QFG VA LGT
Sbjct: 230 PKYLNSPETDIFHKGRELYGFYEVLQTHREPKRIMVVEGYMDVVALAQFGVDYAVASLGT 289
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + T++++ +DGD+AGR AA RA+E L Y TD + +KF+FLPD DPD
Sbjct: 290 STTGDHIQSLFRQTSTVVCCYDGDRAGRDAAWRAMEQALPYLTDGRQLKFMFLPDGEDPD 349
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
S IR G +F ++V EAM L +F ++ + + + K L +P +
Sbjct: 350 SCIRAEGKNVFEQRVDEAMPLSEFLFNSLMRQVDTTSREGKAKLSTLAVPLIDKVP-GGT 408
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
LR + L K + + +E I+ KT+ + I+ + +++ LLI +P+
Sbjct: 409 LRLYLRELLGKNLGLP-DEAQLQQLISMHGKTSKTVGQVQIKRTPMR-EVIALLIQHPNF 466
Query: 358 INEINSEDMIIFSKCSQNYVKMFFQLID 385
+ ++ DM F + + + ++D
Sbjct: 467 VTQLEF-DMSAFENIELSGLNLLLSIVD 493
>gi|161829861|ref|YP_001597430.1| DNA primase [Coxiella burnetii RSA 331]
gi|161761728|gb|ABX77370.1| DNA primase [Coxiella burnetii RSA 331]
Length = 553
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 203/365 (55%), Gaps = 24/365 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
S FY+ +LK S AI++LK RGL E +F +GYAPN W L + + L + G
Sbjct: 121 SRFYQRELKRSPTAIHYLKSRGLTGETAKQFAIGYAPNAWENLRPFAKNSKTQSQLVTHG 180
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+V K + + +DRFR RIMFPI++ G++I FGGR + + + KY+NSP
Sbjct: 181 LLVKK------------ENRCFDRFRHRIMFPIRDVRGRVIAFGGRSVGE-DLPKYMNSP 227
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ETPLF K NELYGL EA LI EGYMDV+ L Q G VA LGTA + H+
Sbjct: 228 ETPLFQKGNELYGLHEACKTHRPLPRALIVEGYMDVVSLHQHGITYAVATLGTATSVRHL 287
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+K+L YT+ II+ FDGD AGR+AA RAL L + I+FLFLP DPDS I+K G
Sbjct: 288 QKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDSLIQKIG 347
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK-II 303
+ F K+ +A L + F + +++I D K+ + + L + P+ + ++ ++
Sbjct: 348 REAFENKIDQAPPLSEVFFSHLQKEIPIRSIDD--KAAFAKQALEHLRPMPRGIFYQLLL 405
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEINS 363
L++ + + +E+++L ++ + + + + Y + +L PSL++ I
Sbjct: 406 EELAQRLTLDLSELDSL------TVAPPPMPAASTRVPSLAYHALSILAQAPSLVSVI-- 457
Query: 364 EDMII 368
+DM I
Sbjct: 458 QDMTI 462
>gi|153208759|ref|ZP_01946997.1| DNA primase [Coxiella burnetii 'MSU Goat Q177']
gi|165918785|ref|ZP_02218871.1| DNA primase [Coxiella burnetii Q321]
gi|120575791|gb|EAX32415.1| DNA primase [Coxiella burnetii 'MSU Goat Q177']
gi|165917509|gb|EDR36113.1| DNA primase [Coxiella burnetii Q321]
Length = 553
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 203/365 (55%), Gaps = 24/365 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
S FY+ +LK S AI++LK RGL E +F +GYAPN W L + + L + G
Sbjct: 121 SRFYQRELKRSPTAIHYLKSRGLTGETAKQFAIGYAPNAWENLRPFAKNSKTQSQLVTHG 180
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+V K + + +DRFR RIMFPI++ G++I FGGR + + + KY+NSP
Sbjct: 181 LLVKK------------ENRCFDRFRHRIMFPIRDVRGRVIAFGGRSVGE-DLPKYMNSP 227
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ETPLF K NELYGL EA LI EGYMDV+ L Q G VA LGTA + H+
Sbjct: 228 ETPLFQKGNELYGLHEACKTHRPLPRALIVEGYMDVVSLHQHGITYAVATLGTATSVRHL 287
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+K+L YT+ II+ FDGD AGR+AA RAL L + I+FLFLP DPDS I+K G
Sbjct: 288 QKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDSLIQKIG 347
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK-II 303
+ F K+ +A L + F + +++I D K+ + + L + P+ + ++ ++
Sbjct: 348 REAFENKIDQAPPLSEVFFSHLQKEIPIRSIDD--KAAFAKQALEHLRPMPRGIFYQLLL 405
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEINS 363
L++ + + +E+++L ++ + + + + Y + +L PSL++ I
Sbjct: 406 EELAQRLTLDLSELDSL------TVAPPPMPAASTRVPSLAYHALSILAQAPSLVSVI-- 457
Query: 364 EDMII 368
+DM I
Sbjct: 458 QDMTI 462
>gi|212212054|ref|YP_002302990.1| DNA primase [Coxiella burnetii CbuG_Q212]
gi|212010464|gb|ACJ17845.1| DNA primase [Coxiella burnetii CbuG_Q212]
Length = 572
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 203/365 (55%), Gaps = 24/365 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
S FY+ +LK S AI++LK RGL E +F +GYAPN W L + + L + G
Sbjct: 140 SRFYQRELKRSPTAIHYLKSRGLTGETAKQFAIGYAPNAWENLRPFAKNSKTQSQLVTHG 199
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+V K + + +DRFR RIMFPI++ G++I FGGR + + + KY+NSP
Sbjct: 200 LLVKK------------ENRCFDRFRHRIMFPIRDVRGRVIAFGGRSVGE-DLPKYMNSP 246
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ETPLF K NELYGL EA LI EGYMDV+ L Q G VA LGTA + H+
Sbjct: 247 ETPLFQKGNELYGLHEACKTHRPLPRALIVEGYMDVVSLHQHGITYAVATLGTATSVRHL 306
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+K+L YT+ II+ FDGD AGR+AA RAL L + I+FLFLP DPDS I+K G
Sbjct: 307 QKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDSLIQKIG 366
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK-II 303
+ F K+ +A L + F + +++I D K+ + + L + P+ + ++ ++
Sbjct: 367 REAFENKIDQAPPLSEVFFSHLQKEIPIRSIDD--KAAFAKQALEHLRPMPRGIFYQLLL 424
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEINS 363
L++ + + +E+++L ++ + + + + Y + +L PSL++ I
Sbjct: 425 EELAQRLTLDLSELDSL------TVAPPPMPAASTRVPSLAYHALSILAQAPSLVSVI-- 476
Query: 364 EDMII 368
+DM I
Sbjct: 477 QDMTI 481
>gi|411010640|ref|ZP_11386969.1| DNA primase [Aeromonas aquariorum AAK1]
Length = 595
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 199/364 (54%), Gaps = 25/364 (6%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA-SSGL 65
FY+ LKN+ +A+ +LK RGL E++ RFN+GYAP +W+ + + F L S G+
Sbjct: 127 FYESNLKNAPQAVEYLKGRGLTGEVVKRFNIGYAPGDWDQVRRRFGSRREHEQLLISGGM 186
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPE 125
++ + + P YDRFR RIMFPI++ G++IGFGGR++ D KY+NSPE
Sbjct: 187 LIPR-----DSGP-----GSYDRFRDRIMFPIRDKRGRVIGFGGRVLGDGT-PKYLNSPE 235
Query: 126 TPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIK 185
TP+FHK EL+GL+E K A + +L+ EGYMDV+ L Q+ VA LGTA TS HI
Sbjct: 236 TPIFHKGRELFGLYEVKQAHKDPRRILVVEGYMDVVALGQYDIDYAVAALGTATTSDHIH 295
Query: 186 KILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGY 245
+ T ++ +DGD AGR AA RAL+ L + D + +KF+FLPD DPDS +R+ G
Sbjct: 296 TLFRTTAEVVCCYDGDNAGREAAWRALDNALSHLQDGRELKFVFLPDGEDPDSLVRQIGK 355
Query: 246 KIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNI----EYLFKIIPLSSSLRFK 301
+ F + +A F E + + L E K+ + L + +P R
Sbjct: 356 EGFEALLDQAQPFADFMFERLGRDAALSG----EAGKFEVANKAAELIRRVP-EGFTREG 410
Query: 302 IISSLSKIIKVSFNE--INNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLIN 359
+I+ LS +++ N+ I LF N+ + K + + + L++ YP++
Sbjct: 411 LITRLSSMMRWGENKQRIAELFARNSQP--KAEVSKPKTAKLTPLRRALALMVQYPAITA 468
Query: 360 EINS 363
E+ +
Sbjct: 469 ELPA 472
>gi|215919213|ref|NP_820578.2| DNA primase [Coxiella burnetii RSA 493]
gi|206584097|gb|AAO91092.2| DNA primase [Coxiella burnetii RSA 493]
Length = 572
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 203/365 (55%), Gaps = 24/365 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
S FY+ +LK S AI++LK RGL E +F +GYAPN W L + + L + G
Sbjct: 140 SRFYQRELKRSPTAIHYLKSRGLTGETAKQFAIGYAPNAWENLRPFAKNSKTQSQLVTHG 199
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+V K + + +DRFR RIMFPI++ G++I FGGR + + + KY+NSP
Sbjct: 200 LLVKK------------ENRCFDRFRHRIMFPIRDVRGRVIAFGGRSVGE-DLPKYMNSP 246
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ETPLF K NELYGL EA LI EGYMDV+ L Q G VA LGTA + H+
Sbjct: 247 ETPLFQKGNELYGLHEACKTHRPLPRALIVEGYMDVVSLHQHGITYAVATLGTATSVRHL 306
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+K+L YT+ II+ FDGD AGR+AA RAL L + I+FLFLP DPDS I+K G
Sbjct: 307 QKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDSLIQKIG 366
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK-II 303
+ F K+ +A L + F + +++I D K+ + + L + P+ + ++ ++
Sbjct: 367 REAFENKIDQAPPLSEVFFSHLQKEIPIRSIDD--KAAFAKQALEHLRPMPRGIFYQLLL 424
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEINS 363
L++ + + +E+++L ++ + + + + Y + +L PSL++ I
Sbjct: 425 EELAQRLTLDLSELDSL------TVAPPPMPAASTRVPSLAYHALSILAQAPSLVSVI-- 476
Query: 364 EDMII 368
+DM I
Sbjct: 477 QDMTI 481
>gi|212219306|ref|YP_002306093.1| DNA primase [Coxiella burnetii CbuK_Q154]
gi|212013568|gb|ACJ20948.1| DNA primase [Coxiella burnetii CbuK_Q154]
Length = 572
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 203/365 (55%), Gaps = 24/365 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
S FY+ +LK S AI++LK RGL E +F +GYAPN W L + + L + G
Sbjct: 140 SRFYQRELKRSPTAIHYLKSRGLTGETAKQFAIGYAPNAWENLRPFAKNSKTQSQLVTHG 199
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+V K + + +DRFR RIMFPI++ G++I FGGR + + + KY+NSP
Sbjct: 200 LLVKK------------ENRCFDRFRHRIMFPIRDVRGRVIAFGGRSVGE-DLPKYMNSP 246
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ETPLF K NELYGL EA LI EGYMDV+ L Q G VA LGTA + H+
Sbjct: 247 ETPLFQKGNELYGLHEACKTHRPLPRALIVEGYMDVVSLHQHGITYAVATLGTATSVRHL 306
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+K+L YT+ II+ FDGD AGR+AA RAL L + I+FLFLP DPDS I+K G
Sbjct: 307 QKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDSLIQKIG 366
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK-II 303
+ F K+ +A L + F + +++I D K+ + + L + P+ + ++ ++
Sbjct: 367 REAFENKIDQAPPLSEVFFSHLQKEIPIRSIDD--KAAFAKQALEHLRPMPRGIFYQLLL 424
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEINS 363
L++ + + +E+++L ++ + + + + Y + +L PSL++ I
Sbjct: 425 EELAQRLTLDLSELDSL------TVAPPPMPAASTRVPSLAYHALSILAQAPSLVSVI-- 476
Query: 364 EDMII 368
+DM I
Sbjct: 477 QDMTI 481
>gi|262401782|ref|ZP_06078348.1| DNA primase [Vibrio sp. RC586]
gi|262352199|gb|EEZ01329.1| DNA primase [Vibrio sp. RC586]
Length = 587
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 117/275 (42%), Positives = 175/275 (63%), Gaps = 15/275 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI++LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 127 MGSIAQFYRQQLKITANKHAIDYLKNRGLSGEIVQKFGIGYVADEWDLVRRNFGQQRSSE 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 187 DMLVTAGVLIES-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN ++ +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 295 STTGDHLQLLFRQTNQVVCCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
SY+RK+G F +++ A L Q+ + +I + L
Sbjct: 355 SYVRKYGKADFEQQLANATPLSQYLFDNLIELHQL 389
>gi|345863312|ref|ZP_08815524.1| DNA primase [endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345125773|gb|EGW55641.1| DNA primase [endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 588
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 134/404 (33%), Positives = 215/404 (53%), Gaps = 34/404 (8%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
M + +Y+ QL++ + AI++LK+RGL EI F +G+AP W N L
Sbjct: 116 MERTASYYRHQLRDHPQGQTAIDYLKQRGLTGEIAATFGIGFAPPGWDNLLQHTGQQSET 175
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ L +G++ + + K YDRFR RIMFPI++ G+ IGFGGR+++DS
Sbjct: 176 LRQLRETGMITEG------------EGKHYDRFRNRIMFPIRDRRGRTIGFGGRILEDSA 223
Query: 117 E---------AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFG 167
KY+NSPETPLFHK ELYGLFEA A+ K +L+ EGYMDV+ L+QFG
Sbjct: 224 ATDKAPKAAGPKYLNSPETPLFHKGRELYGLFEASQALRKIDSLLVVEGYMDVVALAQFG 283
Query: 168 FLQTVAILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKF 227
VA LGTA T H++ I +IF FDGD+AGR AA +AL+ L + + ++F
Sbjct: 284 IRNVVATLGTATTKEHLELIFRICPEVIFCFDGDRAGRDAAWKALQTSLPVMREGREVRF 343
Query: 228 LFLPDKYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEY 287
LFLPD DPD+ +RK G + FS + AM L +F +++ ++++I + +
Sbjct: 344 LFLPDGEDPDTLVRKEGVEQFSDRAKAAMPLSRFLFDQLSSQIDMQSIDGRARLAQLAKP 403
Query: 288 LFKIIPLSSSLRFKIISSLSKIIKVSFNEINNLFKIN----TSSIKHKTIEKKNIQPICI 343
L + +P + R + L ++ + ++++ N S K +++ + P+
Sbjct: 404 LLEQLP-AGLFRQMMFQELEGLVGIKPGQLDSSTPQNQQGKPGSTSRKKYQQQRLTPL-- 460
Query: 344 EYQIMKLLISYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTI 387
+ LL+ P+L ++ ++ + + V + QL++ I
Sbjct: 461 -RSAIALLLDTPTLA-QLAADTDDDWQQWQAPGVPLLRQLLELI 502
>gi|417950657|ref|ZP_12593775.1| DNA primase [Vibrio splendidus ATCC 33789]
gi|342806119|gb|EGU41357.1| DNA primase [Vibrio splendidus ATCC 33789]
Length = 583
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 142/410 (34%), Positives = 224/410 (54%), Gaps = 36/410 (8%)
Query: 5 SDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI-NTLA 61
S FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + K F + L
Sbjct: 128 SQFYRSQLKIAANKPAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRKNFGQQKEAQDMLV 187
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+ G++++ +K RYDRFRGR+MFPI++ G++IGFGGR+++D KY+
Sbjct: 188 TGGMLIEN-----------DKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVLEDGT-PKYL 235
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETP+FHK ELYGL+E A + VL+ EGYMDV+ L+Q+G +VA LGT+ T
Sbjct: 236 NSPETPIFHKGKELYGLYEVLQAYREPPQVLVVEGYMDVVALAQYGVDYSVASLGTSTTG 295
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T++++ +DGD+AG+ AA RALE L Y +KFLFLPD DPDSYIR
Sbjct: 296 DHIQMLFRQTSTVVCCYDGDRAGKEAAWRALENALEYLKTGNTLKFLFLPDGEDPDSYIR 355
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEI--ILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
+ G F + V A L + + + I NL T + + + L IP S
Sbjct: 356 EHGKAAFEQLVQNATPLSTYLFDNLIEIHKLNLGTTEGKSALRAHASALINKIPDSY--- 412
Query: 300 FKIISSLSKIIKVSFNEINNLFKI-----NTSSIKHKTIEKKNIQPICIEYQIMKLLISY 354
F+ + L K++ N L + N + HK +++ ++ +++ LLI
Sbjct: 413 FQEL--LEKLLDERTGFDNQLRRARVHTQNPTPQPHKELKRTPMR------EVIALLIQN 464
Query: 355 PSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK 404
PS + + D+ + +F +++D H + I+ + +++ +
Sbjct: 465 PSYADMV--PDLSSVKGLPLPGLSLFVEVLDKCHAHPH-INTGQLLEHWR 511
>gi|350552400|ref|ZP_08921602.1| DNA primase [Thiorhodospira sibirica ATCC 700588]
gi|349794342|gb|EGZ48159.1| DNA primase [Thiorhodospira sibirica ATCC 700588]
Length = 589
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 185/316 (58%), Gaps = 13/316 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+++Y QL++S EAI +LK+RGL +I F +GYAP W+AL K +++ L ++
Sbjct: 123 AAEYYYAQLRHSPEAIEYLKQRGLTGQIARTFQIGYAPKGWDALYKALGSAFDVHILLTA 182
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GL+ ++ YDRF RIMFPI++ G++IGFGGR + N KY+NS
Sbjct: 183 GLLGERPQGGY-----------YDRFVDRIMFPIRDGRGRVIGFGGRSL-GQNSPKYLNS 230
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK LYGLFEA+ A + +++ EGY+DVI L+QFG VA GTA T+
Sbjct: 231 PETPVFHKGRALYGLFEARQAQGRLSQLVVVEGYLDVIALAQFGLPYAVATQGTATTAEQ 290
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
+ + ++ I+F FDGD AG++AA RALE L D + FLFLP DPDS+IR+
Sbjct: 291 LTLLFRHSPRIVFCFDGDAAGKKAAWRALEHTLPVMQDHREAAFLFLPPGDDPDSWIRRE 350
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F + +AM L +F + E+ + L + + + L ++P L+ +++
Sbjct: 351 GLAAFEHLLQQAMLLSEFLIRELSQRHALNSAEGRAQLVREAARLMALMP-EGLLKAQLL 409
Query: 304 SSLSKIIKVSFNEINN 319
+ LS++ ++ + + +
Sbjct: 410 TELSRLTAIARDTVAH 425
>gi|374703430|ref|ZP_09710300.1| DNA primase [Pseudomonas sp. S9]
Length = 657
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 196/331 (59%), Gaps = 19/331 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ A++FY+ LK+ K A+++LK RGL EI F LG+AP W+ L+K +L +N+
Sbjct: 120 LTAAAEFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLHK-YLASDNL 178
Query: 58 NTLA--SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDS 115
A +GL+V+ E KRYDRFR R++FPI+++ G++I FGGR++ D
Sbjct: 179 QQKAMIDAGLLVENA----------ESGKRYDRFRDRVIFPIRDSRGRVIAFGGRVLGD- 227
Query: 116 NEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAIL 175
++ KY+NSPETP+FHK ELYGL+EA+ + +++ EGYMDVI L+Q G VA L
Sbjct: 228 DKPKYLNSPETPVFHKGQELYGLYEARKSNRDLDEIMVVEGYMDVIALAQQGLRNAVATL 287
Query: 176 GTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYD 235
GTA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLPD D
Sbjct: 288 GTATSEEHLKRLFRIVPSVLFCFDGDQAGRNAAWRALEATLPNLQDGRRARFLFLPDGED 347
Query: 236 PDSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL 294
PD+ +R G + F ++ +A L +F E + + ++++ + + +P
Sbjct: 348 PDTLVRSEGTEAFRARINQQAQPLADYFFEHLSEEADPRSLEGKAHLVTLAAPMIEKVP- 406
Query: 295 SSSLRFKIISSLSKIIKVSFNEINNLFKINT 325
++LR + LS+I +S +N + +++
Sbjct: 407 GNNLRILMRQRLSEITGLSGETVNQMAPVHS 437
>gi|375264394|ref|YP_005021837.1| DNA primase [Vibrio sp. EJY3]
gi|369839718|gb|AEX20862.1| DNA primase [Vibrio sp. EJY3]
Length = 585
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 170/270 (62%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI- 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + K F +
Sbjct: 126 MGSIAQFYRNQLKQPANKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQQKDAQ 185
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L S G++++ +K RYDRFRGR+MFPI + G++IGFGGR++ D
Sbjct: 186 DMLVSGGMLIEN-----------DKGNRYDRFRGRVMFPIHDRRGRVIGFGGRVLGDGT- 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + VL+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 234 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQVLVVEGYMDVVALAQYGVDYSVASLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 294 STTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALRYLKTGNTLKFLFLPDGEDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
S++RK+G F +++ +A L + + +I
Sbjct: 354 SFVRKYGKAAFEQQIEQATPLSSYLFDNLI 383
>gi|407069935|ref|ZP_11100773.1| DNA primase [Vibrio cyclitrophicus ZF14]
Length = 583
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 227/410 (55%), Gaps = 36/410 (8%)
Query: 5 SDFYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI-NTLA 61
S+FY+ QLK S K AI++LK RGL+ EI+ +F +GY +EW+ + K F + L
Sbjct: 128 SNFYRSQLKISANKPAIDYLKNRGLSGEIVQKFGIGYVADEWDLVRKNFGQQKEAQDMLV 187
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+ G++++ +K RYDRFRGR+MFPI++ G++IGFGGR+++D KY+
Sbjct: 188 TGGMLIEN-----------DKGNRYDRFRGRVMFPIRDRRGRVIGFGGRVLEDGT-PKYL 235
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT+ T
Sbjct: 236 NSPETPIFHKGKELYGLYEVMQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGTSTTG 295
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H++ + T++++ +DGD+AG+ AA RALE L + +KFLFLPD DPDSYIR
Sbjct: 296 DHVQMLFRQTSTVVCCYDGDRAGKEAAWRALENALEFLKTGNTLKFLFLPDGEDPDSYIR 355
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNY--NLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
+ G F + V A L + + +I + NL T + + + L IP S
Sbjct: 356 EHGKDAFEQLVQNATPLSTYLFDNLIELHKLNLGTTEGKSALRAHASALINKIPDSY--- 412
Query: 300 FKIISSLSKIIKVSFNEINNLFKI-----NTSSIKHKTIEKKNIQPICIEYQIMKLLISY 354
F+ + L K++ N L + N + HK +++ ++ +++ LLI
Sbjct: 413 FQEL--LEKLLDERTGFDNQLRRARVHTKNPTPQPHKELKRTPMR------EVIALLIQN 464
Query: 355 PSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK 404
PS + + D+ + +F +++D H + I+ + +++ +
Sbjct: 465 PSYADMV--PDLSSVKGLQLPGLSLFVEVLDKCHAHPH-INTGQLLEHWR 511
>gi|406675680|ref|ZP_11082867.1| DNA primase [Aeromonas veronii AMC35]
gi|404627070|gb|EKB23876.1| DNA primase [Aeromonas veronii AMC35]
Length = 595
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 200/362 (55%), Gaps = 25/362 (6%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLASSGL 65
FY+ LK++ A+ +LK RGL E++ RFN+GYAP++W+ + + F ++ L S G+
Sbjct: 127 FYESNLKSAPHAVEYLKGRGLTGEVVKRFNIGYAPSDWDQVRRRFGTSRDHEQLLISGGM 186
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPE 125
++ + + P YDRFR RIMFPI++ G++IGFGGR++ D KY+NSPE
Sbjct: 187 LITR-----DNGP-----GSYDRFRDRIMFPIRDKRGRVIGFGGRVLGDGT-PKYLNSPE 235
Query: 126 TPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIK 185
TP+FHK EL+GL+E K A + +L+ EGYMDV+ L Q+ VA LGTA TS HI
Sbjct: 236 TPIFHKGRELFGLYEVKQAHKDPRRILVVEGYMDVVALGQYDIDYAVAALGTATTSDHIH 295
Query: 186 KILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGY 245
+ T ++ +DGD AGR AA RAL+ L + D + +KF+FLPD DPDS +R+ G
Sbjct: 296 TLFRTTAEVVCCYDGDNAGREAAWRALDNALPHLQDGRELKFVFLPDGEDPDSLVRQIGK 355
Query: 246 KIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNI----EYLFKIIPLSSSLRFK 301
+ F + EA F E + + L E K+ + L + +P R
Sbjct: 356 EGFEALLDEAQPFADFMFERLGRDAALSG----EAGKFEVANKAAELIRRVP-EGFTREG 410
Query: 302 IISSLSKIIKVSFNE--INNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLIN 359
+I+ LS +++ N+ I LF N+ + K + + + L++ YP++
Sbjct: 411 LITRLSSMMRWGENKQRIAELFARNSQP--KAEVNKPKAAKLTPLRRALALMVQYPTVTA 468
Query: 360 EI 361
E+
Sbjct: 469 EL 470
>gi|423203624|ref|ZP_17190202.1| DNA primase [Aeromonas veronii AER39]
gi|404612919|gb|EKB09976.1| DNA primase [Aeromonas veronii AER39]
Length = 595
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 200/362 (55%), Gaps = 25/362 (6%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLASSGL 65
FY+ LK++ A+ +LK RGL E++ RFN+GYAP++W+ + + F ++ L S G+
Sbjct: 127 FYESNLKSAPHAVEYLKGRGLTGEVVKRFNIGYAPSDWDQVRRRFGTSRDHEQLLISGGM 186
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPE 125
++ + + P YDRFR RIMFPI++ G++IGFGGR++ D KY+NSPE
Sbjct: 187 LITR-----DNGP-----GSYDRFRDRIMFPIRDKRGRVIGFGGRVLGDGT-PKYLNSPE 235
Query: 126 TPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIK 185
TP+FHK EL+GL+E K A + +L+ EGYMDV+ L Q+ VA LGTA TS HI
Sbjct: 236 TPIFHKGRELFGLYEVKQAHKDPRRILVVEGYMDVVALGQYDIDYAVAALGTATTSDHIH 295
Query: 186 KILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGY 245
+ T ++ +DGD AGR AA RAL+ L + D + +KF+FLPD DPDS +R+ G
Sbjct: 296 TLFRTTAEVVCCYDGDNAGREAAWRALDNALPHLQDGRELKFVFLPDGEDPDSLVRQIGK 355
Query: 246 KIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNI----EYLFKIIPLSSSLRFK 301
+ F + EA F E + + L E K+ + L + +P R
Sbjct: 356 EGFEALLDEAQPFADFMFERLGRDAALSG----EAGKFEVANKAAELIRRVP-EGFTREG 410
Query: 302 IISSLSKIIKVSFNE--INNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLIN 359
+I+ LS +++ N+ I LF N+ + K + + + L++ YP++
Sbjct: 411 LITRLSSMMRWGENKQRIAELFARNSQP--KAEVNKPKAAKLTPLRRALALMVQYPAVTA 468
Query: 360 EI 361
E+
Sbjct: 469 EL 470
>gi|330831099|ref|YP_004394051.1| DNA primase [Aeromonas veronii B565]
gi|423208256|ref|ZP_17194810.1| DNA primase [Aeromonas veronii AER397]
gi|328806235|gb|AEB51434.1| DNA primase [Aeromonas veronii B565]
gi|404619303|gb|EKB16219.1| DNA primase [Aeromonas veronii AER397]
Length = 595
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 200/362 (55%), Gaps = 25/362 (6%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLASSGL 65
FY+ LK++ A+ +LK RGL E++ RFN+GYAP++W+ + + F ++ L S G+
Sbjct: 127 FYESNLKSAPHAVEYLKGRGLTGEVVKRFNIGYAPSDWDQVRRRFGASRDHEQLLISGGM 186
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPE 125
++ + + P YDRFR RIMFPI++ G++IGFGGR++ D KY+NSPE
Sbjct: 187 LITR-----DNGP-----GSYDRFRDRIMFPIRDKRGRVIGFGGRVLGDGT-PKYLNSPE 235
Query: 126 TPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIK 185
TP+FHK EL+GL+E K A + +L+ EGYMDV+ L Q+ VA LGTA TS HI
Sbjct: 236 TPIFHKGRELFGLYEVKQAHKDPRRILVVEGYMDVVALGQYDIDYAVAALGTATTSDHIH 295
Query: 186 KILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGY 245
+ T ++ +DGD AGR AA RAL+ L + D + +KF+FLPD DPDS +R+ G
Sbjct: 296 TLFRTTAEVVCCYDGDNAGREAAWRALDNALPHLQDGRELKFVFLPDGEDPDSLVRQIGK 355
Query: 246 KIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNI----EYLFKIIPLSSSLRFK 301
+ F + EA F E + + L E K+ + L + +P R
Sbjct: 356 EGFEALLDEAQPFADFMFERLGRDAALSG----EAGKFEVANKAAELIRRVP-EGFTREG 410
Query: 302 IISSLSKIIKVSFNE--INNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLIN 359
+I+ LS +++ N+ I LF N+ + K + + + L++ YP++
Sbjct: 411 LITRLSSMMRWGENKQRIAELFARNSQP--KAEVNKPKAAKLTPLRRALALMVQYPTVTA 468
Query: 360 EI 361
E+
Sbjct: 469 EL 470
>gi|254291202|ref|ZP_04961998.1| DNA primase [Vibrio cholerae AM-19226]
gi|150422896|gb|EDN14847.1| DNA primase [Vibrio cholerae AM-19226]
Length = 609
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/275 (42%), Positives = 174/275 (63%), Gaps = 15/275 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 149 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 208
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 209 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 256
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 257 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 316
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 317 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPD 376
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
SY+RK+G F +++ A L Q+ + +I + L
Sbjct: 377 SYVRKYGKADFEQQLANATPLSQYLFDNLIELHQL 411
>gi|15642769|ref|NP_230169.1| DNA primase [Vibrio cholerae O1 biovar El Tor str. N16961]
Length = 587
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/269 (44%), Positives = 169/269 (62%), Gaps = 13/269 (4%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN 58
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F
Sbjct: 127 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF-----GQ 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+S ++V ++ N + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 182 QRSSEDMLVTAVMLIEN-----DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTP 235
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT+
Sbjct: 236 KYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGTS 295
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
T H++ + TN +I +DGD+AGR AA RALE L Y I+KFLFLPD DPDS
Sbjct: 296 TTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPDS 355
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
Y+RK+G F ++V A L Q+ E +I
Sbjct: 356 YVRKYGKADFEQQVANATPLSQYLFENLI 384
>gi|335424682|ref|ZP_08553686.1| DNA primase [Salinisphaera shabanensis E1L3A]
gi|334888113|gb|EGM26419.1| DNA primase [Salinisphaera shabanensis E1L3A]
Length = 587
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/372 (34%), Positives = 212/372 (56%), Gaps = 33/372 (8%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A FY+ QL+ + + I++LK RG++ + ++ LG+AP+ W+AL + D +
Sbjct: 117 MNLADRFYQTQLRRNPDVIDYLKTRGVSGAMAKQYGLGFAPDSWDALTRQLRDSASG--- 173
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
A +GL++++ +DRFR R+MFPI++T G+ I FGGR + D ++AKY
Sbjct: 174 ARAGLLIERDGGGF-----------FDRFRNRLMFPIRDTRGRTIAFGGRTLGD-DKAKY 221
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLFHKS+ +YGLFEA+ A+ +L+ EGYMDVI L+Q GF VA LGTA T
Sbjct: 222 LNSPETPLFHKSDHMYGLFEARQAMRDLPRLLVVEGYMDVIALAQHGFANAVATLGTATT 281
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
++H+ + +T ++F FDGD AG RAAR+AL+ L + ++FLF+P+ DPDS +
Sbjct: 282 ASHLTTLFRHTEEVVFCFDGDAAGVRAARKALDQSLPVMRGARRVRFLFVPEGEDPDSMV 341
Query: 241 R-KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKD----IEKSKYNIEYLFKIIPLS 295
R + G + F + A +E + +L + IEK++ Y+ + P
Sbjct: 342 RGEDGTQRFQAAIDAARPASAVLMEALTDGLSLDSPDGRATLIEKAR---PYVNALPP-- 396
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK--INTSSI---KHKTIEKKNIQPICIEYQIMKL 350
+ R ++I L+++ ++ +++ ++ +TSS K T +K + P+ + + L
Sbjct: 397 EAFRAELIGELAQLARLPADDLRTMYARTPSTSSAAVDKGSTQQKTRVTPVS---RALSL 453
Query: 351 LISYPSLINEIN 362
L + +L +
Sbjct: 454 LFADSALAERVR 465
>gi|429211563|ref|ZP_19202728.1| DNA primase [Pseudomonas sp. M1]
gi|428156045|gb|EKX02593.1| DNA primase [Pseudomonas sp. M1]
Length = 680
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 191/330 (57%), Gaps = 17/330 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
A+D+Y+ LK+ K A+ +LK RGL EI F LG+AP W N L + D +
Sbjct: 132 AAADYYRQALKSHPARKAAVEYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNLQLK 191
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+V+ + KRYDRFR R++FPI+++ G++I FGGR++ D ++
Sbjct: 192 AMLDAGLLVENP----------DSGKRYDRFRDRVIFPIRDSRGRVIAFGGRVLGD-DKP 240
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 241 KYLNSPETPVFHKGQELYGLFEARKNNRDLDEIMVVEGYMDVIALAQQGIRNAVATLGTA 300
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ HIK++ +I+F FDGDQAGR+AA RALE L D + I+FLFLP+ DPDS
Sbjct: 301 TSEEHIKRLFRLVPNILFCFDGDQAGRKAAWRALESALPNLQDGRKIRFLFLPEGEDPDS 360
Query: 239 YIRKFGYKIFSKK-VLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F + V +A L +F ++++ + T++ L + IP ++
Sbjct: 361 LVRAEGPDAFRARLVQQAQPLADYFFQQLMQEADPSTLEGKAHLATLAGPLLEKIP-GNT 419
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSS 327
LR + L ++ +S +N+L +SS
Sbjct: 420 LRLLMRQRLGQLTGLSGEALNHLNAPRSSS 449
>gi|344342689|ref|ZP_08773560.1| DNA primase [Marichromatium purpuratum 984]
gi|343806025|gb|EGV23920.1| DNA primase [Marichromatium purpuratum 984]
Length = 576
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/418 (33%), Positives = 227/418 (54%), Gaps = 34/418 (8%)
Query: 4 ASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWN-ALNKVFLDYNNINT 59
A ++ QL+ + AI++LK RGL+ EI R+ +G+AP + L+++
Sbjct: 120 ADGLFRRQLREHPQAARAIDYLKSRGLSGEIAARYGIGFAPGGGDFLLSRLGRTPERCRQ 179
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L GL+ + + +RYDRFR RI+FPI++ G++IGFGGR++ D K
Sbjct: 180 LVDCGLIGE------------QDGRRYDRFRDRIIFPIRDRRGRVIGFGGRILGDGR-PK 226
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKS-GYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
Y+NSPETPLFHK ELYGLFEA+ + + VL+ EGY+DVI L+Q G VA LGTA
Sbjct: 227 YLNSPETPLFHKGRELYGLFEAQRGVRRGLERVLVVEGYLDVIALAQHGIDCAVATLGTA 286
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
T+ H++++ ++F FDGD+AGR AA +ALE L A+ + +FLFLP+ DPD+
Sbjct: 287 TTADHLQRLSRTAPELVFCFDGDRAGRDAAWKALETTLPLASGSQPQRFLFLPEGEDPDT 346
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSL 298
+RK G + F +V A L QF +++ ++ TI + L + +P +
Sbjct: 347 LVRKEGAEGFLARVERATPLSQFLFDQLTAQVDMTTIDGRARLAPLARPLIERVP-AGVF 405
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
R + LS+++ + ++ + TS H+ ++ +P + I LL+++PSL+
Sbjct: 406 RDLLEQRLSELVGLERRAPSS--RRRTSRAPHQGALEQQ-RPSRTAWAIA-LLLNHPSLV 461
Query: 359 NEINSEDMIIFSKCSQNYVKMFFQLIDTIH---------IFKNDIDHSKFIKYLKKIN 407
++ E + + S V + +L++TI + + DH F YL++++
Sbjct: 462 TRVD-ELPTDWRRASNQGVGILVELLETIRQHPTLTKAALIERWRDHPHF-DYLQRLS 517
>gi|262275020|ref|ZP_06052831.1| DNA primase [Grimontia hollisae CIP 101886]
gi|262221583|gb|EEY72897.1| DNA primase [Grimontia hollisae CIP 101886]
Length = 583
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 171/266 (64%), Gaps = 15/266 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLA 61
+ FY+ L++ K AI++LK RGL+ EI+ +F +GY +EW+ + F D + L
Sbjct: 127 AQFYQSGLRSDAGKTAIDYLKGRGLSGEIVKKFGIGYVADEWDQVRSRFGRDNTSQQALV 186
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
S+G++++ + +RYDRFRGR+MFPI++ G++IGFGGR++ D KY+
Sbjct: 187 STGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGRVLGDGT-PKYL 234
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 235 NSPETPIFHKGRELYGLYEVLQAHREPKQLLVVEGYMDVVALAQFGIDYAVASLGTSTTA 294
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+++I +DGD+AGR AA RA+E L + D + +KF+FLPD DPDS +R
Sbjct: 295 EHIQTLFRQTSNVICCYDGDRAGRDAAWRAMEQALPHLVDGRQLKFMFLPDGEDPDSMVR 354
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEII 267
K G F +++ AMSL +F ++
Sbjct: 355 KEGKDGFEQRLASAMSLSEFLFNTLM 380
>gi|374623715|ref|ZP_09696218.1| DNA primase [Ectothiorhodospira sp. PHS-1]
gi|373942819|gb|EHQ53364.1| DNA primase [Ectothiorhodospira sp. PHS-1]
Length = 585
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/393 (32%), Positives = 204/393 (51%), Gaps = 23/393 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+ + L+ EA+++LK+RGL EI F LG+APN + L + L
Sbjct: 119 AAATHFTDNLRRHPEAVDYLKQRGLTGEIARDFRLGFAPNLRDDLLRTLGKTFKEQELLD 178
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GL + + P YDRFRGRIMFPI+++ G+++GFG RL+ E KY+N
Sbjct: 179 AGLATQR-----DGGPP------YDRFRGRIMFPIRDSRGRVVGFGARLLG-PGEPKYLN 226
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
+PETP+FHK +LYGL+EA+ A + +L+ EGYMDVI L+QFG VA LGTA T
Sbjct: 227 TPETPVFHKGQQLYGLYEARKASPRLEELLVVEGYMDVIALAQFGLRNAVATLGTATTRD 286
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H++++ ++F FDGD+AGR AA RALE L D + ++FLFLP+ DPD+ +R+
Sbjct: 287 HLERLFRVVPHLVFCFDGDRAGREAAWRALEQTLPVMRDGRQVRFLFLPEGEDPDTLVRR 346
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + ++ +A L ++E+ ++ T + L + +P LR +I
Sbjct: 347 EGLEGLRARMGQARPLSDVLIDELRQRHDAGTREGRAALGTQATRLIRDMP-DGLLRAQI 405
Query: 303 ISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQI--------MKLLISY 354
I+ L+++ VS ++ + P ++ + +L+
Sbjct: 406 INELAQLASVSTDQFERGLAPREADPPPAPSPSHRPTPANRRQRLEITPVRLALSILLDQ 465
Query: 355 PSLINEINSEDMIIFSKCSQNYVKMFFQLIDTI 387
P+L E+ DM VK+ Q+++T+
Sbjct: 466 PTLARELG--DMDWLQDLQAPGVKILVQVLETL 496
>gi|345877750|ref|ZP_08829488.1| 30S ribosomal protein S10 [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344225201|gb|EGV51566.1| 30S ribosomal protein S10 [endosymbiont of Riftia pachyptila (vent
Ph05)]
Length = 588
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/404 (32%), Positives = 215/404 (53%), Gaps = 34/404 (8%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
M + +Y+ QL++ + AI++LK+RGL EI F +G+AP W N L
Sbjct: 116 MERTASYYRHQLRDHPQGQTAIDYLKQRGLTGEIAATFGIGFAPPGWDNLLQHTGQQSET 175
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ L +G++ + + K YDRFR RIMFPI++ G+ IGFGGR+++DS
Sbjct: 176 LRQLRETGMITEG------------EGKHYDRFRNRIMFPIRDRRGRTIGFGGRILEDSA 223
Query: 117 E---------AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFG 167
KY+NSPETPLFHK ELYGLFEA A+ K +L+ EGYMDV+ L+QFG
Sbjct: 224 TTDRAPKAAGPKYLNSPETPLFHKGRELYGLFEASQALRKIDSLLVVEGYMDVVALAQFG 283
Query: 168 FLQTVAILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKF 227
VA LGTA T H++ I +IF FDGD+AGR AA +AL+ L + + ++F
Sbjct: 284 IRNVVATLGTATTKEHLELIFRICPEVIFCFDGDRAGRDAAWKALQTSLPVMREGREVRF 343
Query: 228 LFLPDKYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEY 287
LFLPD DPD+ +RK G + FS + AM L +F +++ ++++I + +
Sbjct: 344 LFLPDGEDPDTLVRKEGVEQFSDRAKAAMPLSRFLFDQLSSQIDMQSIDGRARLAQLAKP 403
Query: 288 LFKIIPLSSSLRFKIISSLSKIIKVSFNEINNLFKIN----TSSIKHKTIEKKNIQPICI 343
L + +P + R + + ++ + ++++ N S K +++ + P+
Sbjct: 404 LLEQLP-AGLFRQMMFQEIEGLVGIKPGQLDSSTPQNQQGKPGSTSRKKYQQQRLTPL-- 460
Query: 344 EYQIMKLLISYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTI 387
+ LL+ P+L ++ ++ + + V + QL++ I
Sbjct: 461 -RSAIALLLDTPTLA-QLAADTDDDWQQWQAPGVPLLRQLLELI 502
>gi|415904459|ref|ZP_11552341.1| DnaG, partial [Herbaspirillum frisingense GSF30]
gi|407763555|gb|EKF72205.1| DnaG, partial [Herbaspirillum frisingense GSF30]
Length = 300
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 109/188 (57%), Positives = 138/188 (73%), Gaps = 8/188 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+DFY+ QL+ ++ AI++LK RGL EI RF LGY+P+EW++L +VF DY N L
Sbjct: 120 MTRANDFYRHQLRGAQIAIDYLKGRGLTGEIAARFGLGYSPDEWDSLRQVFPDYEN-EAL 178
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV+DK KRYDRFRGR+MFPI+NT GQ+IGFGGR++ D E KY
Sbjct: 179 VESGLVIDKSEEGGAHR------KRYDRFRGRVMFPIRNTKGQVIGFGGRVM-DGGEPKY 231
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K +ELYGLFEA+ AI ++GY L+TEGYMDV+ L+Q GF Q VA LGTACT
Sbjct: 232 LNSPETPLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACT 291
Query: 181 STHIKKIL 188
H++K+L
Sbjct: 292 PIHVQKLL 299
>gi|89094382|ref|ZP_01167322.1| DNA primase [Neptuniibacter caesariensis]
gi|89081274|gb|EAR60506.1| DNA primase [Oceanospirillum sp. MED92]
Length = 656
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/344 (38%), Positives = 201/344 (58%), Gaps = 20/344 (5%)
Query: 3 CASDFYKIQLKNSK---EAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
AS +Y+ QL++ + A+N+LK RGL+ + F++G+AP+ W N LN + I
Sbjct: 122 AASSYYEDQLRSHQTRESAVNYLKSRGLSGQAAKAFSIGFAPSGWDNILNHLGKSEEEIQ 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
L SGL++ E+ RYDRFR RIMFPI++ G++IGFGGR++ D ++
Sbjct: 182 LLEESGLLIHNE----------ERDSRYDRFRNRIMFPIRDQRGRVIGFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP FHKS ELYGL+EA+ +K ++I EGYMDV+GL+QF VA LGTA
Sbjct: 231 KYLNSPETPTFHKSRELYGLYEARKHNQKLERLIIVEGYMDVVGLAQFDIHYAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
TS H++++ +IF FDGD AGR AA RAL+ L D K +FLFLPD DPDS
Sbjct: 291 TTSQHLERLFKIVPEVIFCFDGDNAGREAAMRALKTTLPVIEDGKEARFLFLPDGEDPDS 350
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS- 297
+R+ G + F ++ A L +FF + +L ++ +++++ E L I + +S
Sbjct: 351 LVRQEGKENFENRISTAQPLSEFFFKCHSEGADLDSMDG--RARFSTEVLPAINSMKTSL 408
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPI 341
L+ ++ + ++ +S +I IN + + +N P+
Sbjct: 409 LQQMMLDKICELTHLSLEQIQT--AINFRESVQEPAQAQNNNPV 450
>gi|197286217|ref|YP_002152089.1| DNA primase [Proteus mirabilis HI4320]
gi|227357333|ref|ZP_03841690.1| DNA primase [Proteus mirabilis ATCC 29906]
gi|194683704|emb|CAR44683.1| DNA primase [Proteus mirabilis HI4320]
gi|227162596|gb|EEI47585.1| DNA primase [Proteus mirabilis ATCC 29906]
Length = 582
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/351 (37%), Positives = 207/351 (58%), Gaps = 23/351 (6%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
+YK L +++EA N+L RGL+EE+I RF++G+ P W N L + + +N L +
Sbjct: 126 YYKSTLNTPDAQEARNYLAHRGLSEEVITRFSIGFVPTGWDNILKRFGQNPDNQALLLEA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G+V+ +K + YDRFR R+MFPI++ G++I FGGR++ D + KY+NS
Sbjct: 186 GMVITN-----------DKGRTYDRFRQRVMFPIRDRRGRVIAFGGRVLGD-DLPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA++ +L+ EGYMDV+ L+QFG VA LGT+ T+ H
Sbjct: 234 PETEIFHKGRQLYGLYEAQHTHPNPAKLLVVEGYMDVVALAQFGIDYAVASLGTSTTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+++I +DGD+AGR AA RALE L + D + ++F+FLP+ DPDS +R+
Sbjct: 294 IQLLFRTTDNVICCYDGDRAGRDAAWRALETALPFLNDGRSLRFMFLPEGDDPDSLVRRE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F K++ +A SL +F + ++ +L T + K L IP S +LR ++
Sbjct: 354 GKEAFEKRMEQAHSLSEFLFDSLVPQVDLSTQEGNGKLYSLARPLIDQIP-SETLRLYLL 412
Query: 304 SSLSKII-KVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
L + +++ LF N S+ H+T + QP + M++LI+
Sbjct: 413 RELGNLTGNPDIEQMDRLFGRN--SLHHET----SYQPTKLRTTPMRILIA 457
>gi|330448777|ref|ZP_08312424.1| DNA primase [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328492968|dbj|GAA06921.1| DNA primase [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 586
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/388 (34%), Positives = 217/388 (55%), Gaps = 19/388 (4%)
Query: 1 MICASDFYKIQLKNSKE--AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M S FY+ QL+ + A+++LK RGL+ EI+ +F++G+ P++W+ + F D +
Sbjct: 122 MGQVSQFYQSQLRTKEGEIAVDYLKGRGLSGEIVKKFSIGFIPDQWDMVRSRFGRDNESQ 181
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L ++G++++ + +RYDRFRGR+MFPI + G++IGFGGR+I D
Sbjct: 182 KALVNTGMLIEN-----------DNGRRYDRFRGRVMFPIHDRRGRVIGFGGRVIGDGT- 229
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+E + +++ EGYMDV+ L+QFG VA LGT
Sbjct: 230 PKYLNSPETDIFHKGRELYGLYEVLQTYREPEKIMVVEGYMDVVALAQFGVDYAVASLGT 289
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + T++++ +DGD+AGR AA RA+E L Y TD + +KF+FLPD DPD
Sbjct: 290 STTGDHIQSLFRQTSTVVCCYDGDRAGRDAAWRAMEQALPYLTDGRQLKFMFLPDGEDPD 349
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
S IR G F +V +AM L +F ++L + + + K L +P +
Sbjct: 350 SCIRAEGKDAFELRVNQAMPLSEFLFNSLMLQVDTTSREGKAKLSTLAVPLIDKVP-GGT 408
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
LR + L K + + +E I+ + K + + I+ + +++ LLI +P+
Sbjct: 409 LRLYLRELLGKNLGLP-DEAQLQQLISMHGKESKPVGQVQIKRTPMR-EVIALLIQHPNF 466
Query: 358 INEINSEDMIIFSKCSQNYVKMFFQLID 385
+ ++ DM F + + + ++D
Sbjct: 467 VTQLEF-DMSAFDNIELSGLNLLLSIVD 493
>gi|425069985|ref|ZP_18473100.1| DNA primase [Proteus mirabilis WGLW6]
gi|425071355|ref|ZP_18474461.1| DNA primase [Proteus mirabilis WGLW4]
gi|404596172|gb|EKA96697.1| DNA primase [Proteus mirabilis WGLW6]
gi|404599162|gb|EKA99622.1| DNA primase [Proteus mirabilis WGLW4]
Length = 582
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/351 (37%), Positives = 206/351 (58%), Gaps = 23/351 (6%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
+YK L +++EA N+L RGL+EE+I RF++G+ P W N L + + +N L +
Sbjct: 126 YYKSTLNTPDAQEARNYLAHRGLSEEVITRFSIGFVPTGWDNILKRFGQNPDNQALLLEA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G+V+ +K + YDRFR R+MFPI++ G++I FGGR++ D + KY+NS
Sbjct: 186 GMVITN-----------DKGRTYDRFRQRVMFPIRDRRGRVIAFGGRVLGD-DLPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT+ T+ H
Sbjct: 234 PETEIFHKGRQLYGLYEAQQTHPNPAKLLVVEGYMDVVALAQFGIDYAVASLGTSTTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+++I +DGD+AGR AA RALE L + D + ++F+FLP+ DPDS +R+
Sbjct: 294 IQLLFRTTDNVICCYDGDRAGRDAAWRALETALPFLNDGRSLRFMFLPEGDDPDSLVRRE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F K++ +A SL +F + ++ +L T + K L IP S +LR ++
Sbjct: 354 GKEAFEKRMEQAHSLSEFLFDSLVPQVDLSTQEGNGKLYSLARPLIDQIP-SETLRLYLL 412
Query: 304 SSLSKII-KVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
L + +++ LF N S+ H+T + QP + M++LI+
Sbjct: 413 RELGNLTGNPDIEQMDRLFGRN--SLHHET----SYQPTKLRTTPMRILIA 457
>gi|359780767|ref|ZP_09283992.1| DNA primase [Pseudomonas psychrotolerans L19]
gi|359370827|gb|EHK71393.1| DNA primase [Pseudomonas psychrotolerans L19]
Length = 635
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 194/326 (59%), Gaps = 19/326 (5%)
Query: 1 MICASDFYKIQLKN---SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ A+++Y++ L+N + A+++LKKRGL EI F LG+AP W+ L K L +++
Sbjct: 120 LAAAAEYYRLALRNHPKRQAAVDYLKKRGLTGEIARDFGLGFAPPGWDNLGK-HLGGDDL 178
Query: 58 NTLA--SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDS 115
A +GL+V+ E KRYDRFR R++FPI+++ G++I FGGR++ D
Sbjct: 179 QQKAMLDAGLLVENA----------ESGKRYDRFRDRVIFPIRDSRGRVIAFGGRVLGD- 227
Query: 116 NEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAIL 175
++ KY+NSPETP+FHK ELYGLFEA+ +L+ EGYMDVI L+Q G VA L
Sbjct: 228 DKPKYLNSPETPVFHKGQELYGLFEARKHNRDLDEILVVEGYMDVIALAQQGIRNAVATL 287
Query: 176 GTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYD 235
GTA + HIK++ SI+F FDGDQAGR AA RALE L D ++FLFLP+ D
Sbjct: 288 GTATSEEHIKRLFRIVPSILFCFDGDQAGRSAAWRALESALPVLKDGFRVRFLFLPEGED 347
Query: 236 PDSYIRKFGYKIFSKK-VLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL 294
PD+ +R G F + V +A L ++F +++++ + T++ L + IP
Sbjct: 348 PDTLVRAEGADAFQARFVQQAQPLAEYFFQQLMIEADPATLEGKAHLATLAAPLIEKIP- 406
Query: 295 SSSLRFKIISSLSKIIKVSFNEINNL 320
++LR + LS++ + + ++ L
Sbjct: 407 GNNLRLLMRQRLSELTGLGNDALSQL 432
>gi|444920300|ref|ZP_21240143.1| DNA primase [Wohlfahrtiimonas chitiniclastica SH04]
gi|444508619|gb|ELV08788.1| DNA primase [Wohlfahrtiimonas chitiniclastica SH04]
Length = 578
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/305 (41%), Positives = 182/305 (59%), Gaps = 16/305 (5%)
Query: 4 ASDFYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTL 60
A+ F++ +L N + A ++L R LN E I RFN+G+AP+ WNAL + TL
Sbjct: 124 ANQFFQRELAKPNHQHARDYLANRDLNSEDIARFNIGFAPDSWNALLMTLKSKGASEKTL 183
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GL++ NKVN YDRFR R+MFPI+N GQ I FGGR+I + E KY
Sbjct: 184 EEAGLII-PAQNKVNHF--------YDRFRDRVMFPIRNRKGQTIAFGGRII-GAGEPKY 233
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETP+FHK ELYGL+E + + +L+ EGYMDV+ +S FG VA LGTA +
Sbjct: 234 LNSPETPVFHKGKELYGLYELRRDVRNYNEILVVEGYMDVVMMSHFGIQNVVATLGTAMS 293
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+T + + YT+SI+F FDGD+AG++AA +A+E L DK IKFLFLPD++DPDSY+
Sbjct: 294 NTQVANLFRYTHSIVFCFDGDEAGQKAAYKAMENALPVMNVDKEIKFLFLPDRHDPDSYL 353
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYL---FKIIPLSSS 297
+ G F V A+ L ++ Y+L++I+ + ++ L IPL
Sbjct: 354 KAHGQAAFLDLVNNALPLSEYLFAHFEQRYSLESIEGRSQLLTDMGALINSMPDIPLRDL 413
Query: 298 LRFKI 302
LR ++
Sbjct: 414 LRVEL 418
>gi|117619022|ref|YP_855377.1| DNA primase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
gi|117560429|gb|ABK37377.1| DNA primase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
Length = 595
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 201/364 (55%), Gaps = 25/364 (6%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLASSGL 65
FY+ LKN+ +A+ +LK RGL E++ RFN+GYAP +W+ + + F + L S G+
Sbjct: 127 FYESNLKNAPQAVEYLKGRGLTGEVVKRFNIGYAPADWDQVRRRFGASREHEQLLISGGM 186
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPE 125
++ + + P YDRFR RIMFPI++ G++IGFGGR++ + KY+NSPE
Sbjct: 187 LITR-----DSGP-----GSYDRFRDRIMFPIRDKRGRVIGFGGRVLGEGT-PKYLNSPE 235
Query: 126 TPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIK 185
TP+FHK EL+GL+E K A + +L+ EGYMDV+ L Q+ VA LGTA TS HI
Sbjct: 236 TPIFHKGRELFGLYEVKQAHKDPRRILVVEGYMDVVALGQYEIDYAVAALGTATTSDHIH 295
Query: 186 KILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGY 245
+ T ++ +DGD AGR AA RAL+ L + D + +KF+FLPD DPDS +R+ G
Sbjct: 296 TLFRTTAEVVCCYDGDNAGREAAWRALDNALSHLQDGRELKFVFLPDGEDPDSLVRQIGK 355
Query: 246 KIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNI----EYLFKIIPLSSSLRFK 301
+ F + +A F E + + L E K+ + L + +P R
Sbjct: 356 EGFEALLDKAQPFADFMFERLGRDAALSG----EAGKFEVANKAAELIRRVP-EGFTREG 410
Query: 302 IISSLSKIIKVSFNE--INNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLIN 359
+I+ LS +++ N+ I+ LF N+ + K + + + L++ YP++
Sbjct: 411 LITRLSSMMRWGENKQRIDELFARNSQP--KAEVNKPKAAKLTPLRRALALMVQYPAITA 468
Query: 360 EINS 363
E+ +
Sbjct: 469 ELPA 472
>gi|438000032|ref|YP_007183765.1| DNA primase [Candidatus Kinetoplastibacterium blastocrithidii (ex
Strigomonas culicis)]
gi|451812961|ref|YP_007449414.1| DNA primase dnaG [Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
gi|429339266|gb|AFZ83688.1| DNA primase [Candidatus Kinetoplastibacterium blastocrithidii (ex
Strigomonas culicis)]
gi|451778930|gb|AGF49810.1| DNA primase dnaG [Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
Length = 595
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 147/386 (38%), Positives = 221/386 (57%), Gaps = 26/386 (6%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M +Y L +S AI++LKKRG++ + I FNLG++ +N+L+K+F DY N L
Sbjct: 116 MFKTQSYYSHLLYSSVAAISYLKKRGISNDFIKFFNLGWSDTRYNSLSKIFSDYYNNIYL 175
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
GLV I K N++ RYDRFR RI+FPIKN G ++GFG R I ++ + KY
Sbjct: 176 IDVGLV----IKKSNEN-------RYDRFRERIIFPIKNQYGSVVGFGARTISNT-QPKY 223
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPET +F K ELYGL+E++ I+ G VL+ EGYMDVI L+Q G VA LGT+ T
Sbjct: 224 LNSPETVIFSKGRELYGLWESRINIKSKGVVLVVEGYMDVISLTQHGVNNVVATLGTSIT 283
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
IKK+L ++ I+FSFDGD AG+ AA +AL +C+ D I+FLFL D YDPD YI
Sbjct: 284 KEQIKKLLNISDKIVFSFDGDAAGKNAAWKALLLCISEINDSNEIRFLFLKDGYDPDLYI 343
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
++ G IF + +++ L + +E I Y++ + +I K + S+LR
Sbjct: 344 KENGKDIFENCLKKSVPLSKMLIENYINKYSINEAEGRAACWTDISKTLKQMQHCSALRI 403
Query: 301 KIISSLSKIIKVSFNEI-------NNLFK------INTSSIKHKTIEKKNIQPICIEYQI 347
+I +++I+ + N++ NNLF S+I+++ + K P + ++
Sbjct: 404 QIEKEIAEILNFNKNDLTHFLLENNNLFSNKKWPTARHSNIQNRYLSNKKSVPSLMR-RL 462
Query: 348 MKLLISYPSLINEINSEDMIIFSKCS 373
LL+S +L+N I + + I K S
Sbjct: 463 FNLLLSNLTLVNHIGDQQLEILDKDS 488
>gi|323493626|ref|ZP_08098747.1| DNA primase [Vibrio brasiliensis LMG 20546]
gi|323312149|gb|EGA65292.1| DNA primase [Vibrio brasiliensis LMG 20546]
Length = 585
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 119/275 (43%), Positives = 171/275 (62%), Gaps = 15/275 (5%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI- 57
M + FY+ QLK SK AI++LK RGL+ +I+ +F +GY +EW+ + K F
Sbjct: 126 MGSIAQFYRDQLKQPKSKVAIDYLKDRGLSGQIVQKFGIGYVADEWDLVRKNFGQTPQTQ 185
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L S G++++ + RYDRFRGR+MFPI++ G++IGFGGR+I D
Sbjct: 186 DMLISGGMLIEN-----------DNGNRYDRFRGRVMFPIRDRRGRVIGFGGRVIGDGT- 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 234 PKYLNSPETPIFHKGKELYGLYEVMQAHREPSKILVVEGYMDVVALAQYGVDYSVASLGT 293
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + TN+++ +DGD+AG+ AA RALE L Y +KFLFLPD DPD
Sbjct: 294 STTGDHIQLLFRQTNTVVCCYDGDRAGKDAAWRALENALQYLKTGNTLKFLFLPDGEDPD 353
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
S+IRK G F ++V +A L + + +I + L
Sbjct: 354 SFIRKHGKDAFEQEVEQATPLSSYLFDNLIELHQL 388
>gi|145300337|ref|YP_001143178.1| DNA primase [Aeromonas salmonicida subsp. salmonicida A449]
gi|418362284|ref|ZP_12962923.1| DNA primase [Aeromonas salmonicida subsp. salmonicida 01-B526]
gi|142853109|gb|ABO91430.1| DNA primase [Aeromonas salmonicida subsp. salmonicida A449]
gi|356686546|gb|EHI51144.1| DNA primase [Aeromonas salmonicida subsp. salmonicida 01-B526]
Length = 595
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 134/389 (34%), Positives = 209/389 (53%), Gaps = 29/389 (7%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLASSGL 65
FY+ LK++ +A+ +LK RGL E++ RFN+GYAP +W+ + + F ++ L S G+
Sbjct: 127 FYESNLKSAPQAVEYLKGRGLTGEVVKRFNIGYAPADWDQVRRRFGASRDHEQLLISGGM 186
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPE 125
++ + + YDRFR RIMFPI++ G++IGFGGR++ D KY+NSPE
Sbjct: 187 LITRDSGAGS----------YDRFRDRIMFPIRDKRGRVIGFGGRVLGDGT-PKYLNSPE 235
Query: 126 TPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIK 185
TP+FHK EL+GL+E K A + +L+ EGYMDV+ L Q+ VA LGT+ T+ HI
Sbjct: 236 TPIFHKGRELFGLYEVKQAHKDPRRILVVEGYMDVVALGQYDIDYAVAALGTSTTTDHIH 295
Query: 186 KILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGY 245
+ T ++ +DGD AGR AA RAL+ L + D + +KF+FLPD DPDS +R+ G
Sbjct: 296 TLFRTTAEVVCCYDGDNAGREAAWRALDNALSHLQDGRELKFVFLPDGEDPDSLVRQIGK 355
Query: 246 KIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNI----EYLFKIIPLSSSLRFK 301
+ F + +A F E + + L E K+ + L + +P R
Sbjct: 356 EGFEALLDQAQPFADFMFERLGRDAALSG----EAGKFEVANKAAELIRRVP-EGFTREG 410
Query: 302 IISSLSKIIKVSFNE--INNLFKINTSSIKHKTIEK-KNIQPICIEYQIMKLLISYPSLI 358
+I+ LS +++ N+ I LF N+ T K + P+ + + L++ YPS+
Sbjct: 411 LITRLSSMMRWGENKQRIAELFARNSQPKAELTKPKAAKLTPL---RRALALMVQYPSVT 467
Query: 359 NEINSEDMIIFSKCSQNYVKMFFQLIDTI 387
E+ + M + +K QL I
Sbjct: 468 AELPA--MPELAGLRVQGIKFLLQLHQQI 494
>gi|406941434|gb|EKD73927.1| hypothetical protein ACD_45C00142G0008 [uncultured bacterium]
Length = 572
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 119/272 (43%), Positives = 169/272 (62%), Gaps = 13/272 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI-NTLASS 63
+ FY+ QLK S+ I++LK+RGL+ EI F +G+AP+ W+ + + F + L
Sbjct: 122 TQFYQQQLKQSQVVIDYLKQRGLSGEIAKEFGVGFAPSGWDHVLQTFGKTAQLKQQLYDI 181
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G+++ K E YDRFR R+MFPI + G+I+GFGGR+I E KY+NS
Sbjct: 182 GMLIKK-----------EDGGYYDRFRERVMFPIHDRRGRIVGFGGRII-GKGEPKYLNS 229
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+F K +ELYGL +A+ A + +VLI EGYMDVI L Q G VA LGTA T+ H
Sbjct: 230 PETPIFQKGHELYGLCQAQQANQHLKHVLIVEGYMDVIALFQHGITYAVATLGTATTTHH 289
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++++ YT I+F FDGDQAGR AA RAL V L D+ ++F+FLPD DPDS +R
Sbjct: 290 LQRLFRYTPEIVFCFDGDQAGRLAAWRALLVTLPLMRDEIQVRFMFLPDGEDPDSLVRTE 349
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTI 275
G F K++ +A++L FF + + +L ++
Sbjct: 350 GSDHFIKRIQQAVTLSHFFFQSLAAQTDLSSM 381
>gi|420260053|ref|ZP_14762742.1| DNA primase [Yersinia enterocolitica subsp. enterocolitica WA-314]
gi|404512462|gb|EKA26308.1| DNA primase [Yersinia enterocolitica subsp. enterocolitica WA-314]
Length = 582
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 150/458 (32%), Positives = 239/458 (52%), Gaps = 37/458 (8%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ LK N+ +A +LK RGL+EEII F +G+AP W NAL + D +
Sbjct: 120 MESLSAFYQQSLKGQNANQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +G++V +V YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 180 TALNDAGMLVTNDTGRV-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDGV- 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETEIFHKGRQLYGLYEAQVSHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 ATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G + F +++ EA L F E ++ +L + K L +P +
Sbjct: 348 TLVRKEGKEAFEQRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVP-GET 406
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMK----LLI 352
LR + L N++ L + K E N QP ++ M+ LL+
Sbjct: 407 LRLYLRQQLG-------NKLGLLDDSQLDKLMPKQAENANTYQPPQLKRTTMRILIGLLV 459
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNF 410
P L I S + +K + + +F +L++T + + + + ++ + K ++
Sbjct: 460 QNPQLATLIPSLKGVEQAKLAG--LPLFIELVETC-LAQPGLTTGQLLELYRDNKFSQQL 516
Query: 411 ESIIVK----IQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
E++ ++D E + +L D+I + R+ +
Sbjct: 517 ETLATWNHMIVEDMVEQTFVDTLTSLYDSILEQRQETL 554
>gi|443469985|ref|ZP_21060123.1| DNA primase [Pseudomonas pseudoalcaligenes KF707]
gi|442899504|gb|ELS25952.1| DNA primase [Pseudomonas pseudoalcaligenes KF707]
Length = 665
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 189/332 (56%), Gaps = 17/332 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ ASD+Y+ LK K A+ +LK RGL EI F LG+AP W N L + D
Sbjct: 121 LTAASDYYRHALKQHPTRKAAVEYLKGRGLTGEIARDFALGFAPPGWDNLLKHMGGDSLQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ + KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 181 QKHMIDAGLLIENA----------DTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPETPVFHKGQELYGLFEARKHNRNLDEIMVVEGYMDVIALAQQGLRNAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H++++ SI+F FDGDQAGR+AA RALE L D + +FLFLP+ DP
Sbjct: 290 TATSEEHVRRLFRLVPSILFCFDGDQAGRKAAWRALEATLPSLEDGRRARFLFLPEGEDP 349
Query: 237 DSYIRKFGYKIFSKKVLE-AMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +RK G F ++ + A L +F +++ L + +++ L + IP
Sbjct: 350 DSLVRKEGTDAFRARITQHAQPLADYFFQQLTLEADPASLEGKAHLATLAAPLIERIP-G 408
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKINTSS 327
++L+ + L++I ++ + + L + S
Sbjct: 409 ANLKVLMRQRLAEITGLNGDALGQLARSMPSG 440
>gi|423203987|ref|ZP_17190543.1| DNA primase [Aeromonas veronii AMC34]
gi|404627981|gb|EKB24769.1| DNA primase [Aeromonas veronii AMC34]
Length = 595
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 129/357 (36%), Positives = 194/357 (54%), Gaps = 15/357 (4%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLV 66
FY+ LK++ A+ +LK RGL E++ RFN+GYAP++W+ + + F + L SG +
Sbjct: 127 FYESNLKSAPHAVEYLKGRGLTGEVVKRFNIGYAPSDWDQVRRRFGSSRDHEQLLISGGM 186
Query: 67 VDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPET 126
+I + N YDRFR RIMFPI++ G++IGFGGR++ D KY+NSPET
Sbjct: 187 ---LITRDNGP------GSYDRFRDRIMFPIRDKRGRVIGFGGRVLGDGT-PKYLNSPET 236
Query: 127 PLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKK 186
P+FHK EL+GL+E K A + +L+ EGYMDV+ L Q+ VA LGTA TS HI
Sbjct: 237 PIFHKGRELFGLYEVKQAHKDPRRILVVEGYMDVVALGQYDIDYAVAALGTATTSDHIHT 296
Query: 187 ILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYK 246
+ T ++ +DGD AGR AA RAL+ L + D + +KF+FLPD DPDS +R+ G +
Sbjct: 297 LFRTTAEVVCCYDGDNAGREAAWRALDNALSHLQDGRELKFVFLPDGEDPDSLVRQIGKE 356
Query: 247 IFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIISSL 306
F + EA F E + + L + L + +P R +I+ L
Sbjct: 357 GFEALLDEAQPFADFMFERLGRDAALSGEAGKLEVANKAAELIRRVP-EGFTREGLITRL 415
Query: 307 SKIIKVSFNE--INNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEI 361
S +++ E I LF N+ + K + + + L++ YP++ E+
Sbjct: 416 SYMMRWGEKEKRIAELFARNSQP--KAEVNKPKAAKLTPLRRALALMVQYPAVTAEL 470
>gi|300724880|ref|YP_003714205.1| DNA primase [Xenorhabdus nematophila ATCC 19061]
gi|297631422|emb|CBJ92119.1| DNA biosynthesis; DNA primase [Xenorhabdus nematophila ATCC 19061]
Length = 582
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 141/441 (31%), Positives = 240/441 (54%), Gaps = 41/441 (9%)
Query: 8 YKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASSGLV 66
+ + ++ A +L +RGL+EEI RF +G+AP W N L + + + L +G++
Sbjct: 129 HSLSTPTAQSAQQYLTQRGLSEEITQRFAIGFAPAGWDNVLKRFAHNVEDRKQLNDAGML 188
Query: 67 VDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPET 126
V + + YDRFR R+MFPI++ G++I FGGR++ D+ KY+NSPET
Sbjct: 189 VTN-----------DNGRTYDRFRERVMFPIRDRRGRVIAFGGRVLGDA-LPKYLNSPET 236
Query: 127 PLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKK 186
+FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+ HI+
Sbjct: 237 EIFHKGRQLYGLYEAQQNHDTLSRLLVVEGYMDVVALAQFGIDYAVASLGTSTTAEHIQL 296
Query: 187 ILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYK 246
+ T+S+I +DGD+AGR AA R+LE L Y D + ++F+FLPD DPDS +RK G +
Sbjct: 297 LFRTTDSVICCYDGDRAGRDAAWRSLETALPYLNDGRQLRFMFLPDGEDPDSLVRKEGQE 356
Query: 247 IFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIISSL 306
F +++ +A++L +F E ++ +L T + K L IP +LRF ++ +
Sbjct: 357 AFEQRMEKALTLSEFLFESLLPQIDLSTPEGATKLSSLAMPLISQIP-GEALRFYLLQEI 415
Query: 307 SKIIKVSFN-----EINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEI 361
+++ + + L K +TS T + ++P + ++ LL+ P L +
Sbjct: 416 GRLLGIPDTTQLERSLAKLVKKDTS-----TYQALKLKPTTMRI-LIALLVQNPHLATLV 469
Query: 362 NSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFI------KYLKKINKNFESIIV 415
S + ++ + + +F +L+DT + + + + + KY K++ K +
Sbjct: 470 PSLQGMFSAQIAG--LPLFIELVDTC-LAQPGLTTGQLLEQYRDNKYAKQLEKLAAWNDI 526
Query: 416 KIQDNFEYSIEIAKKTLLDAI 436
+I+ EIA+KT DA+
Sbjct: 527 QIE-------EIAEKTFSDAL 540
>gi|442608716|ref|ZP_21023463.1| DNA primase [Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441750112|emb|CCQ09525.1| DNA primase [Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 585
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 146/403 (36%), Positives = 222/403 (55%), Gaps = 29/403 (7%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M A+ +Y+ QLK NS + I ++K RGL+ E RF +GYAP+EW+AL + ++
Sbjct: 120 MQQAALYYQHQLKQHPNSNQVIEYIKGRGLSGETAKRFQIGYAPSEWDALYRYLGKTKDL 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+VD + NQ + +RYD FR R+MFPI++ G++I FGGR++
Sbjct: 180 QQQ-----LVDLKLASENQ-----QQRRYDFFRDRLMFPIRDKRGRVIAFGGRVMSSEQG 229
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+EAK A +K VLI EGYMDV+ L++ G VA LGT
Sbjct: 230 PKYLNSPETRIFHKGFELYGLYEAKQAHQKLTQVLIVEGYMDVVALAEKGIDYAVAALGT 289
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A TS H++ + T+ +I +DGD+AGR AA RALE L Y T K ++F+FLPD DPD
Sbjct: 290 ATTSEHMQTLFRTTDLVICCYDGDRAGRDAAWRALENALQYLTHGKSLRFVFLPDGEDPD 349
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
S ++K G F +++ A ++ L ++ D K+K E L I + S
Sbjct: 350 SLVQKEGKMAFEQRLANAQDYSAVLFQK--LTQDIDITNDAGKAKLMSEALPLIEKVPSD 407
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKK-NIQPICIEYQIMKLLISYPS 356
+++ + K+ + L K T+ + + IE+K + P+ Q + LLI +PS
Sbjct: 408 FYQELL--IEKLARFIGKTTEQLTKKLTTPRQQQNIERKFKVTPM---RQAIGLLIQHPS 462
Query: 357 LINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKF 399
L E++ + ++ +++F +L K IDH K+
Sbjct: 463 LAKEVDH--LPELAEMGIPGIELFLRLQ------KRCIDHPKY 497
>gi|90580772|ref|ZP_01236575.1| DNA primase [Photobacterium angustum S14]
gi|90438040|gb|EAS63228.1| DNA primase [Vibrio angustum S14]
Length = 585
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 128/392 (32%), Positives = 216/392 (55%), Gaps = 27/392 (6%)
Query: 1 MICASDFYKIQLKNSKE--AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M S FY+ QL+ + AI++LK RGL+ EI+ +F++G+ P++W+ + F D +
Sbjct: 122 MGQVSQFYQSQLRTKEGEIAIDYLKSRGLSGEIVKKFSIGFIPDQWDMVRSRFGRDNESQ 181
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L ++G++++ + +RYDRFRGR+MFPI + G++IGFGGR++ D
Sbjct: 182 KALVNTGMLIEN-----------DNGRRYDRFRGRVMFPIHDRRGRVIGFGGRVLGDGT- 229
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+E + +++ EGYMDV+ L+QFG VA LGT
Sbjct: 230 PKYLNSPETDIFHKGRELYGLYEVLQTHREPNKIMVVEGYMDVVALAQFGVDYAVASLGT 289
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ + T++++ +DGD+AGR AA RA+E L Y TD + +KF+FLPD DPD
Sbjct: 290 STTGDHIQSLFRQTSTVVCCYDGDRAGRDAAWRAMEQALPYLTDGRQLKFMFLPDGEDPD 349
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
S IR G F ++V EA L +F ++ + + + K L +P +
Sbjct: 350 SCIRAEGKDAFEQRVDEATPLSEFLFNSLMRQVDTTSREGKAKLSTLAVPLIDKVP-GGT 408
Query: 298 LRFKIISSLSKII----KVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
LR + L K + + ++ ++ + + I++ ++ +++ LLI
Sbjct: 409 LRLYLRELLGKNLGLPDEAQLQQLISMHGKTSKPVGQVQIKRTPMR------EVIALLIQ 462
Query: 354 YPSLINEINSEDMIIFSKCSQNYVKMFFQLID 385
+P+ + ++ DM F + + + ++D
Sbjct: 463 HPNFVTQLEF-DMSAFENIELSGLNLLLSIVD 493
>gi|70732950|ref|YP_262721.1| DNA primase [Pseudomonas protegens Pf-5]
gi|68347249|gb|AAY94855.1| DNA primase [Pseudomonas protegens Pf-5]
Length = 657
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 189/325 (58%), Gaps = 17/325 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+D+Y+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 121 LTAAADYYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI++T G+II FGGR++ D +
Sbjct: 181 QKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPETPVFHKGQELYGLFEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR+AA RALE L D + +FLFLP+ DP
Sbjct: 290 TATSEEHLKRLFRIVPNVLFCFDGDQAGRKAAWRALEATLTCLQDGRRARFLFLPEGEDP 349
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++I + ++++ L + IP
Sbjct: 350 DTLVRSEGTDAFRARINQHAQPLADYFFQQLIDEADPRSLEGKAHLATLAAPLIEKIP-G 408
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL 320
++LR + LS+I ++ +N L
Sbjct: 409 ANLRTLMRQRLSEITGLTNETVNQL 433
>gi|167031435|ref|YP_001666666.1| DNA primase [Pseudomonas putida GB-1]
gi|166857923|gb|ABY96330.1| DNA primase [Pseudomonas putida GB-1]
Length = 660
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 188/325 (57%), Gaps = 17/325 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
AS+FY+ L+N K A+++LK RGL+ EI F LG+AP W N L + D
Sbjct: 122 AASEFYRQALRNHPTRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DPDS
Sbjct: 291 TSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESALPNLQDGRRARFLFLPEGEDPDS 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F E++ + + ++++ L + IP ++
Sbjct: 351 LVRAEGTDAFMARINQHAQPLADYFFEQLSVEADPRSLEGKAHMATLAAPLIEKIP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK 322
LR + + L +I + ++ L +
Sbjct: 410 LRQLMRNRLKEITGLDPQQVEQLAQ 434
>gi|338994481|ref|ZP_08635197.1| DNA primase [Halomonas sp. TD01]
gi|338766765|gb|EGP21681.1| DNA primase [Halomonas sp. TD01]
Length = 634
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 193/338 (57%), Gaps = 13/338 (3%)
Query: 4 ASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA 61
A+ FY+ +LK + A +L+ RGL+++++ + +GYAP W AL K L I
Sbjct: 124 AASFYRERLKMQEGQGAQRYLQGRGLSQDVVSAYGIGYAPGGWEAL-KQHLSARGIGE-- 180
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
S + +I++ + + YDRFR R+MFPI++ G+ I FGGR++ D + KY+
Sbjct: 181 SVQIEYGLLIHREDTG------RTYDRFRDRVMFPIRDLRGRTIAFGGRVMGD-EQPKYL 233
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETP+FHK ELYGL+EA+ A K ++I EGYMDV+ L+Q+G VA LGTA T
Sbjct: 234 NSPETPVFHKGRELYGLYEARQASSKLEQLVIVEGYMDVVALAQYGINNAVATLGTATTE 293
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ ++ + ++F FDGD+AGR+AA RALE L D + +FLFLP+ DPD+ +R
Sbjct: 294 DHLSRLFRLVSRVVFCFDGDRAGRQAATRALETALPQMIDGREARFLFLPEGDDPDTLVR 353
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
+ G F +V AM L +F E+ +L T++ E+ + +P L+
Sbjct: 354 REGSDAFQDRVTCAMPLSEFLFEQAAQGRDLNTVEGRERFASQVLEALNKVP-EGMLKSL 412
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ 339
++ +L+K ++ +++ L ++ K +K + Q
Sbjct: 413 LLEALAKRSGLAQSQLKALLDKRATASAQKEAQKASSQ 450
>gi|254784702|ref|YP_003072130.1| DNA primase [Teredinibacter turnerae T7901]
gi|237684641|gb|ACR11905.1| DNA primase [Teredinibacter turnerae T7901]
Length = 640
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/276 (43%), Positives = 169/276 (61%), Gaps = 15/276 (5%)
Query: 4 ASDFYKIQLKNSK---EAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINT 59
AS +Y++QLK ++ +A+ +L+ RGL+ I F LG+AP W N L K L +I+
Sbjct: 121 ASSYYQLQLKENRGRDKAVRYLQNRGLSGHIARDFGLGFAPGGWDNLLTKYGLSEQDIDL 180
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L SGLV+ + E K YDRFR RIMFPI + G++IGFGGR++ DS + K
Sbjct: 181 LVGSGLVIRRA----------EDDKLYDRFRNRIMFPILDNRGRVIGFGGRVLDDS-KPK 229
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPET +FHK ELYGL++A+ A +L+ EGYMDVI L+Q+G VA LGTAC
Sbjct: 230 YLNSPETDVFHKGEELYGLYQARMANRNLEQILVVEGYMDVIALAQYGLTNAVATLGTAC 289
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
H+K +T I+F FDGD AGR AA+RAL L D + IKFLFLP+ DPD+
Sbjct: 290 GEEHLKLAFKHTQEIVFCFDGDAAGRTAAKRALMNSLTSMEDGRQIKFLFLPEGQDPDTL 349
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTI 275
+R+ G + F++++ L F + N++++
Sbjct: 350 VRQIGAERFAQQIKNGTPLEDFLFDVAAEGLNIQSM 385
>gi|148545674|ref|YP_001265776.1| DNA primase [Pseudomonas putida F1]
gi|148509732|gb|ABQ76592.1| DNA primase [Pseudomonas putida F1]
Length = 660
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 193/333 (57%), Gaps = 19/333 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
AS+FY+ L++ K A+++LK RGL+ EI F LG+AP W N L + D N
Sbjct: 122 AASEFYRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQQN 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DPDS
Sbjct: 291 TSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDPDS 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F E++ + + ++++ L + IP ++
Sbjct: 351 LVRAEGTDAFMARINQHAQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK--INTSSI 328
LR + + L +I + ++ L + TSS+
Sbjct: 410 LRQLMRNRLKEITGLDPQQVEQLAQQAPATSSM 442
>gi|408479351|ref|ZP_11185570.1| DNA primase [Pseudomonas sp. R81]
Length = 657
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 188/338 (55%), Gaps = 27/338 (7%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+V+ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLVENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHMKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ E ++E + L+
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLT----------EEADPRSLEGKAHMATLA 398
Query: 296 SSLRFKIISS-LSKIIKVSFNEINNLFKINTSSIKHKT 332
+ L K+ + L ++++ EI L S + H T
Sbjct: 399 APLIDKVPGANLKSLMRMRLQEITGLSGEAVSQLVHNT 436
>gi|365538640|ref|ZP_09363815.1| DNA primase [Vibrio ordalii ATCC 33509]
Length = 580
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 167/270 (61%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK ++ AI +LK RGL+ EI+ +F +GY +EW+ + K F +
Sbjct: 125 MGSIAQFYRNQLKVPGNRHAIEYLKDRGLSGEIVQKFGIGYIADEWDLVRKNFGQQQESQ 184
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L + G++++ +K RYDRFRGRIMFPI++ G++IGFGGR+ D
Sbjct: 185 EMLVTGGMLIEN-----------DKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVTGDGT- 232
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL++ A + VL+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 233 PKYLNSPETPIFHKGKELYGLYDVMQAYREPPQVLVVEGYMDVVALAQYGVDYSVASLGT 292
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN+++ +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 293 STTGDHLQLLFRQTNTVVCCYDGDRAGREAAWRALENALSYLKSGNILKFLFLPDGEDPD 352
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SYIR G F + V +A L ++ ++
Sbjct: 353 SYIRTHGKAAFEQLVQDAEPLSKYLFTNLL 382
>gi|123443867|ref|YP_001007838.1| DNA primase [Yersinia enterocolitica subsp. enterocolitica 8081]
gi|122090828|emb|CAL13710.1| DNA primase [Yersinia enterocolitica subsp. enterocolitica 8081]
Length = 582
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 150/458 (32%), Positives = 238/458 (51%), Gaps = 37/458 (8%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ LK N+ +A +LK RGL+EEII F +G+AP W NAL + D +
Sbjct: 120 MESLSAFYQQSLKGQNANQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +G++V +V YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 180 TALNDAGMLVTNDTGRV-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDGV- 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETEIFHKGRQLYGLYEAQVSHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 ATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G F +++ EA L F E ++ +L + K L +P +
Sbjct: 348 TLVRKEGKDAFEQRMDEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVP-GET 406
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMK----LLI 352
LR + L N++ L + K E N QP ++ M+ LL+
Sbjct: 407 LRLYLRQQLG-------NKLGLLDDSQLDKLMPKQAENANTYQPPQLKRTTMRILIGLLV 459
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNF 410
P L I S + +K + + +F +L++T + + + + ++ + K ++
Sbjct: 460 QNPQLATLIPSLKGVEQAKLAG--LPLFIELVETC-LAQPGLTTGQLLELYRDNKFSQQL 516
Query: 411 ESIIVK----IQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
E++ ++D E + +L D+I + R+ +
Sbjct: 517 ETLATWNHMIVEDMVEQTFVDTLTSLYDSILEQRQETL 554
>gi|402700980|ref|ZP_10848959.1| DNA primase [Pseudomonas fragi A22]
Length = 654
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 192/357 (53%), Gaps = 30/357 (8%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKGHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+V+ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLVENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKFNRSLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHMKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ E ++E + L+
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFQQLT----------EESDPRSLEGKAHMATLA 398
Query: 296 SSLRFKIISS-LSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPI---CIEYQIM 348
+ L K+ + L +++ +EI L S + K QP I+Y M
Sbjct: 399 APLIDKVPGANLRTLMRQRLSEITGLTSETVSQLAQNAPAKVQAQPAYDPGIDYDGM 455
>gi|90020364|ref|YP_526191.1| DNA primase [Saccharophagus degradans 2-40]
gi|89949964|gb|ABD79979.1| histidine kinase [Saccharophagus degradans 2-40]
Length = 656
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 121/277 (43%), Positives = 175/277 (63%), Gaps = 15/277 (5%)
Query: 4 ASDFYKIQLK--NSKE-AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINT 59
AS +Y+ QLK +S+E A+++LK RGL+ I F +GYAP W N L K+ + + +
Sbjct: 121 ASTYYQKQLKEHSSRERAVSYLKGRGLSGAIARDFGMGYAPPGWDNLLVKLGTNEEDRHL 180
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L SGLV+ K + K YDRFR RIMFPIK+T G++IGFGGR++ D ++ K
Sbjct: 181 LVESGLVIRKE----------GEGKLYDRFRHRIMFPIKDTRGRVIGFGGRVLGD-DKPK 229
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+F K ELYGL+EA+ + K +L+ EGYMDVI L+Q+G VA LGTAC
Sbjct: 230 YLNSPETPVFSKGRELYGLYEARQSNRKLERLLVVEGYMDVIALAQYGMRNAVATLGTAC 289
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
H+K Y N ++F FDGD AGR AA+RAL L D + I+FLFLP+ DPD+
Sbjct: 290 GEDHLKLAFRYVNEVVFCFDGDNAGRTAAKRALVNALPAMEDGRQIRFLFLPEGQDPDTL 349
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIK 276
+R+ G + F+ ++ + L +F + + ++ +++
Sbjct: 350 VRQIGAERFTAQIENGVPLEEFLFDAVAEGIDVNSME 386
>gi|381160982|ref|ZP_09870214.1| DNA primase, catalytic core [Thiorhodovibrio sp. 970]
gi|380879046|gb|EIC21138.1| DNA primase, catalytic core [Thiorhodovibrio sp. 970]
Length = 621
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 187/315 (59%), Gaps = 11/315 (3%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWN-ALNKVFLDYNNINTLAS 62
A+D Y+ QL++ A+ +LK RGL E+ F LG+AP W+ L+++ D + L
Sbjct: 123 AADLYRHQLRDDARAVAYLKGRGLTGEVAAEFGLGFAPAGWDFLLSRLGTDASREQALID 182
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GLV+++ + K +RYDRFR RIMFPI++ G+II FGGR++ D +E KY+N
Sbjct: 183 AGLVIEREKDS--------KTRRYDRFRNRIMFPIRDHRGRIIAFGGRVL-DQSEPKYLN 233
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETP+FHK LYGLFEA+ + VLI EGYMDVI L+QFG VA LGTA T
Sbjct: 234 SPETPVFHKGRGLYGLFEARQRQRQLRRVLIVEGYMDVIALTQFGLPYAVATLGTATTPE 293
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
++++ + ++F FDGD+AGR AA +AL V L YA + ++FL LP +DPDS +R
Sbjct: 294 QLQRLKRQSEELVFCFDGDKAGRAAAGKALRVSLPYAAERLTVRFLLLPAGHDPDSLLRA 353
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G F +++ A L F +E+ ++L++ + + + L + P + R +
Sbjct: 354 EGLAAFERRLERARLLSDFLFDELRERFDLRSAEGLAQCDAQARELIGLAP-EGTYRQLL 412
Query: 303 ISSLSKIIKVSFNEI 317
+ L ++I V EI
Sbjct: 413 LRQLGELIGVQQPEI 427
>gi|398866832|ref|ZP_10622306.1| DNA primase, catalytic core [Pseudomonas sp. GM78]
gi|398238845|gb|EJN24566.1| DNA primase, catalytic core [Pseudomonas sp. GM78]
Length = 655
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHMKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + LS+I +S ++ L +
Sbjct: 408 ANLRILMRQRLSEITGLSGEAVSQLVQ 434
>gi|104779688|ref|YP_606186.1| DNA primase [Pseudomonas entomophila L48]
gi|95108675|emb|CAK13369.1| DNA primase [Pseudomonas entomophila L48]
Length = 660
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/362 (35%), Positives = 197/362 (54%), Gaps = 31/362 (8%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
A++FY+ L+N K A+ +LK RGL+ EI F LG+AP W N L + D
Sbjct: 122 AAAEFYRQALRNHPTRKAAVEYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DPDS
Sbjct: 291 TSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSSLQDGRRARFLFLPEGEDPDS 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A SL +F E++ + ++++ L + +P
Sbjct: 351 LVRAEGTDAFQARINQHAQSLADYFFEQLSNEADPRSLEGKAHMAALATPLIEQVP---- 406
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++L ++++ EI L T + +K+ P + + +YPS
Sbjct: 407 -----GANLRQLMRNRLKEITGLDAQQTERL------RKDTPPPSLPSHNLAPDYNYPSE 455
Query: 358 IN 359
I+
Sbjct: 456 ID 457
>gi|392952343|ref|ZP_10317898.1| hypothetical protein WQQ_19700 [Hydrocarboniphaga effusa AP103]
gi|391861305|gb|EIT71833.1| hypothetical protein WQQ_19700 [Hydrocarboniphaga effusa AP103]
Length = 585
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/397 (31%), Positives = 210/397 (52%), Gaps = 28/397 (7%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A F++ QL+ + A+++LK+RG++ + F +GYAP W+AL + F D +
Sbjct: 117 MAAAERFFREQLRKYQPAVDYLKQRGVSGDTAKVFGIGYAPESWDALTRFFTDPKHA--- 173
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GL++ K YDRFR R+MFPI++T G++I FGGR + + AKY
Sbjct: 174 IEAGLLIQKDGGGC-----------YDRFRNRVMFPIRDTRGRVIAFGGRTL-GGDPAKY 221
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKS-GYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
+NSPETPLFHK L+GL+EAK + + +L+ EGYMDV+ L+Q G + VA LGTA
Sbjct: 222 LNSPETPLFHKGRNLFGLYEAKQSTKAELPQLLVVEGYMDVVMLAQHGIREVVATLGTAT 281
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T H+ + T ++F FDGD+AGR AA RALE L D+ F+FLPD +DPD+
Sbjct: 282 TRDHLALLYKSTRKVVFCFDGDRAGRSAAWRALEQALPEVHGDRECVFMFLPDGHDPDTL 341
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK-SKYNIEYLFKIIPLSSSL 298
+++ G + F +++ +A +L F L E+ NL T+ K + +L K+ P L
Sbjct: 342 VQEIGAEAFRERIGQAQTLSAFLLGELSKQTNLGTLDGRAKLASLAKPHLDKLRP--GPL 399
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIE-------YQIMKLL 351
+ +I L+++ ++ ++ + P IE + ++LL
Sbjct: 400 QTLMIDELARLTRLRREDLQAAAPAAAEEAPAAYSAPRKSAPPRIEPGGSRPVRRALQLL 459
Query: 352 ISYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIH 388
+ P + + ++ + + + + + + +D H
Sbjct: 460 LERPDMADSVDQ--LELLASADVHGIAALVEALDFFH 494
>gi|336125139|ref|YP_004567187.1| DNA primase [Vibrio anguillarum 775]
gi|335342862|gb|AEH34145.1| DNA primase [Vibrio anguillarum 775]
Length = 580
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/270 (42%), Positives = 167/270 (61%), Gaps = 15/270 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK ++ AI +LK RGL+ EI+ +F +GY +EW+ + K F +
Sbjct: 125 MGSIAQFYRNQLKVPGNRHAIEYLKDRGLSGEIVQKFGIGYIADEWDLVRKNFGQQQESQ 184
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L + G++++ +K RYDRFRGRIMFPI++ G++IGFGGR+ D
Sbjct: 185 EMLVTGGMLIEN-----------DKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVTGDGT- 232
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL++ A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 233 PKYLNSPETPIFHKGKELYGLYDVMQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 292
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN+++ +DGD+AGR AA RALE L Y I+KFLFLPD DPD
Sbjct: 293 STTGDHLQLLFRQTNTVVCCYDGDRAGREAAWRALENALSYLKSGNILKFLFLPDGEDPD 352
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEII 267
SYIR G F + V +A L ++ ++
Sbjct: 353 SYIRTHGKAAFEQLVQDAEPLSKYLFTNLL 382
>gi|404398428|ref|ZP_10990012.1| DNA primase [Pseudomonas fuscovaginae UPB0736]
Length = 661
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 122 LTAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 181
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI++T G+II FGGR++ D +
Sbjct: 182 QKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGD-D 230
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 231 KPKYLNSPETPVFHKGQELYGLFEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 290
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 291 TATSEEHMKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 350
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ IR G F ++ A L +F +++ + ++++ L +P
Sbjct: 351 DTLIRAEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 409
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I +S +N L +
Sbjct: 410 ANLRTLMRQRLTEITGLSNETVNQLAQ 436
>gi|399007378|ref|ZP_10709888.1| DNA primase, catalytic core [Pseudomonas sp. GM17]
gi|398120350|gb|EJM10014.1| DNA primase, catalytic core [Pseudomonas sp. GM17]
Length = 654
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 188/325 (57%), Gaps = 17/325 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+I A+D+Y+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LIAAADYYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDQAGRKAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTDEADPRSLEGKAHLATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL 320
++LR + LS+I ++ +N L
Sbjct: 408 ANLRTLMRQRLSEITGLNNETVNQL 432
>gi|386309952|ref|YP_006006008.1| DNA primase [Yersinia enterocolitica subsp. palearctica Y11]
gi|433550960|ref|ZP_20507003.1| DNA primase [Yersinia enterocolitica IP 10393]
gi|318604174|emb|CBY25672.1| DNA primase [Yersinia enterocolitica subsp. palearctica Y11]
gi|431788059|emb|CCO70043.1| DNA primase [Yersinia enterocolitica IP 10393]
Length = 508
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 149/458 (32%), Positives = 238/458 (51%), Gaps = 37/458 (8%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ LK N+ +A +LK RGL++EII F +G+AP W NAL + D +
Sbjct: 46 MESLSAFYQQSLKGQNANQAREYLKHRGLSDEIIQHFAIGFAPPGWDNALKRFGRDGESR 105
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +G++V +V YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 106 TALNDAGMLVTNDTGRV-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDGV- 153
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 154 PKYLNSPETEIFHKGRQLYGLYEAQVSHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGT 213
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 214 ATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPD 273
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G F +++ EA L F E ++ +L + K L +P +
Sbjct: 274 TLVRKEGKDAFEQRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVP-GET 332
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMK----LLI 352
LR + L N++ L + K E N QP ++ M+ LL+
Sbjct: 333 LRLYLRQQLG-------NKLGLLDDSQLDKLMPKQAENVNTYQPPQLKRTTMRILIGLLV 385
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNF 410
P L I S + +K + + +F +L++T + + + + ++ + K ++
Sbjct: 386 QNPQLATLIPSLQGVEQAKLAG--LPLFIELVETC-LAQPGLTTGQLLELYRDNKFSQQL 442
Query: 411 ESIIVK----IQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
E++ ++D E + +L D+I + R+ +
Sbjct: 443 ETLATWNHMIVEDMVEQTFVDTLTSLYDSILEQRQETL 480
>gi|237809410|ref|YP_002893850.1| DNA primase [Tolumonas auensis DSM 9187]
gi|237501671|gb|ACQ94264.1| DNA primase [Tolumonas auensis DSM 9187]
Length = 582
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 145/458 (31%), Positives = 234/458 (51%), Gaps = 41/458 (8%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINT- 59
M A+ +++ QLK + +AI++LK RGL EI+ +F +GYAP W+ L + +
Sbjct: 118 MEWATRYFQNQLKTAPQAIDYLKGRGLTGEIVKQFAIGYAPGGWDGLRQTLVRSAATEAQ 177
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L G+++ + + YDRFR RIMFPI++ G++IGFGGR++ D K
Sbjct: 178 LIELGMLIGR-----------DGGGSYDRFRDRIMFPIRDRRGRVIGFGGRVLGDGT-PK 225
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK EL+GL++ K +LI EGYMDV+ L+QFG VA LGT+
Sbjct: 226 YLNSPETPIFHKGKELFGLYQVKERHRTPARILIVEGYMDVVALAQFGVDYAVASLGTST 285
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T+ H+ + T+ ++ +DGD AGR AA RALE L D K ++F+FLP ++DPDS+
Sbjct: 286 TADHMHLLFRTTSEVVCCYDGDNAGREAAWRALENALPGLQDGKDLRFVFLPQEHDPDSF 345
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
IR++G F +K+ +A S F E + + NL + L + +P + R
Sbjct: 346 IREYGRGAFEQKLDDAQSYADFLFERLTRDLNLSGEAGQNELANKAIALIRRVPEGFN-R 404
Query: 300 FKIISSLSKIIKVSFNE--INNLF-----KINTSSIKHK-------TIEKKNIQPICIEY 345
+++ LS ++ NE + +F + ++ HK T+ ++ I I
Sbjct: 405 ESLLTKLSVQLRWGENEKRLREIFHRQEQEAQQTATTHKNSGKIKLTLIRRAIALIVQHP 464
Query: 346 QIMKLLISYPSLINEINSEDM-IIFSKCSQ--NYVKMFFQLIDTIHIFKNDIDHSKFIKY 402
Q LL S P ++ + + ++ S +Q N QL++ D + +
Sbjct: 465 QQAALLPSLPDVLKSLKEPGIEVLLSLLTQLHNNPMSTGQLLEHW----RDTREGRALAQ 520
Query: 403 LKKINKNFESIIVKIQDNFEYSIEIAKKTLLDAIYKDR 440
L +++ V + DN + +E LLD + R
Sbjct: 521 LAMLDE------VAVGDNIQQELEDVCDRLLDLYLQQR 552
>gi|448747049|ref|ZP_21728711.1| DNA primase, DnaG [Halomonas titanicae BH1]
gi|445565209|gb|ELY21320.1| DNA primase, DnaG [Halomonas titanicae BH1]
Length = 622
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 193/339 (56%), Gaps = 18/339 (5%)
Query: 4 ASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA 61
A+ FY+ +LK + A +L RGL++E+I + +GYAP W AL K L I
Sbjct: 124 AASFYRERLKMQEGQPAQRYLSGRGLSDEVIKTYGIGYAPAGWEAL-KQHLSERGIGEPV 182
Query: 62 SS--GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
GL++ + + + YDRFR R+MFPI++ G+ I FGGR++ D ++ K
Sbjct: 183 QVEYGLLIHRE----------DTGRTYDRFRDRVMFPIRDLRGRTIAFGGRVMGD-DQPK 231
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGL+EA+ A K +++ EGYMDV+ L+Q+G VA LGTA
Sbjct: 232 YLNSPETPVFHKGRELYGLYEARQASNKLEQLIMVEGYMDVVALAQYGIHNAVATLGTAT 291
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T H+ ++ + ++F FDGD+AGR+AA RALE L D + +FLFLP+ DPD+
Sbjct: 292 TEDHLTRLFRLVSRVVFCFDGDRAGRQAASRALETALPQMIDGREARFLFLPEGDDPDTL 351
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
+R+ G + F +V AM L +F E+ +L T++ E+ + +P L+
Sbjct: 352 VRREGTQAFQDRVTCAMPLSEFLFEQAAQGRDLNTVEGRERFASQVLEALNKVP-EGMLK 410
Query: 300 FKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI 338
++ SL+K ++ ++ L + S +++ + ++
Sbjct: 411 SLLLESLAKRSGLAQEQLKVLLE-KRSQASQRSVTQGDV 448
>gi|451811510|ref|YP_007447965.1| DNA primase [Candidatus Kinetoplastibacterium crithidii TCC036E]
gi|451776668|gb|AGF47667.1| DNA primase [Candidatus Kinetoplastibacterium crithidii TCC036E]
Length = 605
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/269 (46%), Positives = 174/269 (64%), Gaps = 15/269 (5%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A ++Y L S A+N+L KR +++E I F +G++ E N L+K F +YN+ +L
Sbjct: 121 AQEYYHSYLLKSSNALNYLSKRKIHKETIELFGIGWSGFETNFLSKCFDNYNDA-SLKEV 179
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+D+ +RYDRFR RIMFPI+N G +IGFGGR I D KY+NS
Sbjct: 180 GLVIDET-------------RRYDRFRQRIMFPIRNYYGNVIGFGGRTI-DRRLPKYLNS 225
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET LF K ELYGL+E++ I+K G+VL+ EGY+DVI L+Q+G VA LGT+ +S H
Sbjct: 226 PETILFSKRKELYGLWESRKNIKKQGFVLVVEGYIDVIILTQYGITNVVATLGTSISSDH 285
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I K+ T+ IIFSFDGD AG RAA RAL +CL D++ I+FL L + YDPDSYI ++
Sbjct: 286 IIKLFSITDKIIFSFDGDDAGHRAAWRALLICLKELKDNREIRFLILKENYDPDSYILEY 345
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
G F + + ++SL +FF+ E+ +N+
Sbjct: 346 GVHKFKEIIDNSISLSKFFINEMQKKHNI 374
>gi|398901146|ref|ZP_10650097.1| DNA primase, catalytic core [Pseudomonas sp. GM50]
gi|398180265|gb|EJM67851.1| DNA primase, catalytic core [Pseudomonas sp. GM50]
Length = 657
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPSRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + LS+I +S ++ L +
Sbjct: 408 ANLRILMRQRLSEITGLSGEAVSQLVQ 434
>gi|431929986|ref|YP_007243032.1| DNA primase, catalytic core [Thioflavicoccus mobilis 8321]
gi|431828289|gb|AGA89402.1| DNA primase, catalytic core [Thioflavicoccus mobilis 8321]
Length = 576
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 173/294 (58%), Gaps = 16/294 (5%)
Query: 4 ASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWN-ALNKVFLDYNNINT 59
A+D Y+ QL+ +S+ A ++L RGL+EEII RF LGYAP+ W L ++ ++
Sbjct: 119 AADLYRRQLRKHPDSRAARDYLSGRGLSEEIIERFGLGYAPDGWGFLLERLGSGRDDQER 178
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
LA +GL+ ++ +RYDRFR RIMFPI++ G+IIGFGGR++ D + K
Sbjct: 179 LAQAGLLAQN-----------DQGRRYDRFRSRIMFPIRDHRGRIIGFGGRVL-DDQKPK 226
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPET +FHK LYGL+EA +LI EGYMDVI L+QF VA LGTA
Sbjct: 227 YLNSPETAVFHKGQALYGLYEAHQRHRALDRLLIVEGYMDVIALAQFDIPYAVATLGTAT 286
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T H++++L +IF FDGD+AGR AA +AL+ L AT + I+FLFLP+ DPD+
Sbjct: 287 TPEHLRRLLRSAPELIFCFDGDRAGREAAWKALQTALPQATGQQQIRFLFLPEGEDPDTL 346
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
+R+ G + ++ A L E + +L + + + E L K +P
Sbjct: 347 VRREGRDGLAGRLAAAPLLSDVLFEHLTNQVDLASTEGRTRLTALAEPLLKDLP 400
>gi|398856704|ref|ZP_10612422.1| DNA primase, catalytic core [Pseudomonas sp. GM79]
gi|398242676|gb|EJN28283.1| DNA primase, catalytic core [Pseudomonas sp. GM79]
Length = 657
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPSRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHMKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + LS+I +S ++ L +
Sbjct: 408 ANLRILMRQRLSEITGLSGEAVSQLVQ 434
>gi|406940002|gb|EKD72896.1| DNA primase [uncultured bacterium]
Length = 529
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 196/365 (53%), Gaps = 23/365 (6%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFL-DYNNINT 59
++ A Y+ QL+ SK I +LK RG++ I +F LGYA EW +L +F +
Sbjct: 66 LMAAGGVYQRQLRQSKRVIAYLKNRGISGIIAKQFGLGYATAEWGSLLNLFGKTAEDKRK 125
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L GL++ K E K YDRFR R+MFPI + G++IGFGGR+I D E K
Sbjct: 126 LLQVGLIISK-----------EDGKCYDRFRDRVMFPIHDKRGRVIGFGGRII-DQGEPK 173
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+F K + LYGL + VL+ EGYMDVI L Q VA LGTA
Sbjct: 174 YLNSPETPIFQKGHTLYGLHQVLAVNHHVPRVLVVEGYMDVIALFQHEITYAVATLGTAT 233
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T+ H + + Y + I+F FDGD AGRRAA RALEV DD I+F+FLPD DPDS
Sbjct: 234 TAFHAQMLFRYASEIVFCFDGDDAGRRAAWRALEVLFPLMRDDLQIRFMFLPDGEDPDSL 293
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSL 298
+R+ G +F ++V+ AM QFF + +L T++ + + Y+ ++ P
Sbjct: 294 VRREGKVLFEERVIAAMPFSQFFFHALCAQADLSTMEGRAHLAARGLTYIKQLSP--CVF 351
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMK----LLISY 354
R ++ L++ ++ + + L + SS I + + P M+ LLI +
Sbjct: 352 RNVLLEELARRTRI---QADQLLQQVGSSAAAGAIPVEALLPKKSMSAPMRLAITLLIQH 408
Query: 355 PSLIN 359
P+L+
Sbjct: 409 PTLVQ 413
>gi|352100251|ref|ZP_08958058.1| DNA primase [Halomonas sp. HAL1]
gi|350601276|gb|EHA17325.1| DNA primase [Halomonas sp. HAL1]
Length = 616
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 187/323 (57%), Gaps = 17/323 (5%)
Query: 4 ASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA 61
A+ FY+ +LK + A +L RGL++E+I + +GYAP+ W AL K L I
Sbjct: 124 AASFYRERLKMQEGQSAQRYLTGRGLSDEVIKTYGIGYAPSGWEAL-KQHLSERGIGEPV 182
Query: 62 SS--GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
GL++ + + + YDRFR R+MFPI++ G+ I FGGR++ D ++ K
Sbjct: 183 QVEYGLLIHRE----------DTGRTYDRFRDRVMFPIRDLRGRTIAFGGRVMGD-DQPK 231
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGL+EA+ A K +++ EGYMDV+ L+QFG VA LGTA
Sbjct: 232 YLNSPETPVFHKGRELYGLYEARQASSKLEQLVMVEGYMDVVALAQFGIHNAVATLGTAT 291
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T H+ ++ + ++F FDGD+AGR+AA RALE L D + +FLFLP+ DPD+
Sbjct: 292 TEDHLTRLFRLVSRVVFCFDGDRAGRQAASRALETALPQMIDGREARFLFLPEGDDPDTL 351
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
+R+ G + F +V AM L +F E+ +L T++ E+ + +P L+
Sbjct: 352 VRREGTQAFQDRVTCAMPLSEFLFEQAAQGRDLNTVEGRERFASQVLEALNKVP-DGMLK 410
Query: 300 FKIISSLSKIIKVSFNEINNLFK 322
++ SL++ ++ ++ L +
Sbjct: 411 SLLLESLAQRSGLAQEQLKVLLE 433
>gi|77461369|ref|YP_350876.1| DNA primase [Pseudomonas fluorescens Pf0-1]
gi|77385372|gb|ABA76885.1| DNA primase [Pseudomonas fluorescens Pf0-1]
Length = 655
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 186/327 (56%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W N L + D
Sbjct: 120 LTAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI++T G+II FGGR++ D +
Sbjct: 180 QKAMIEAGLLIENA----------ETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ IR G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLIRAEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I +S ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLSSESVSQLAQ 434
>gi|398959153|ref|ZP_10677969.1| DNA primase, catalytic core [Pseudomonas sp. GM33]
gi|426411847|ref|YP_007031946.1| DNA primase [Pseudomonas sp. UW4]
gi|398145528|gb|EJM34309.1| DNA primase, catalytic core [Pseudomonas sp. GM33]
gi|426270064|gb|AFY22141.1| DNA primase [Pseudomonas sp. UW4]
Length = 655
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LSAAADFYRQALKSHPSRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKTNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + LS+I +S ++ L +
Sbjct: 408 ANLRTLMRQRLSEITGLSGEAVSQLAQ 434
>gi|339485321|ref|YP_004699849.1| DNA primase [Pseudomonas putida S16]
gi|431800440|ref|YP_007227343.1| DNA primase [Pseudomonas putida HB3267]
gi|338836164|gb|AEJ10969.1| DNA primase [Pseudomonas putida S16]
gi|430791205|gb|AGA71400.1| DNA primase [Pseudomonas putida HB3267]
Length = 660
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 192/333 (57%), Gaps = 19/333 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
AS+FY+ L++ K A+++LK RGL+ EI F LG+AP W N L + D
Sbjct: 122 AASEFYRQALRSHPTRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DPDS
Sbjct: 291 TSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDPDS 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F E++ + + ++++ L + IP ++
Sbjct: 351 LVRAEGTDAFMARINQHAQPLADYFFEQLSVEADPRSLEGKAHMATLAAPLIEKIP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK--INTSSI 328
LR + + L +I + ++ L + TSS+
Sbjct: 410 LRQLMRNRLKEITGLDPQQVEQLAQHAPATSSV 442
>gi|332163000|ref|YP_004299577.1| DNA primase [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
gi|418241496|ref|ZP_12868024.1| DNA primase [Yersinia enterocolitica subsp. palearctica PhRBD_Ye1]
gi|325667230|gb|ADZ43874.1| DNA primase [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
gi|330862245|emb|CBX72406.1| DNA primase [Yersinia enterocolitica W22703]
gi|351779169|gb|EHB21290.1| DNA primase [Yersinia enterocolitica subsp. palearctica PhRBD_Ye1]
Length = 582
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 149/458 (32%), Positives = 238/458 (51%), Gaps = 37/458 (8%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ LK N+ +A +LK RGL++EII F +G+AP W NAL + D +
Sbjct: 120 MESLSAFYQQSLKGQNANQAREYLKHRGLSDEIIQHFAIGFAPPGWDNALKRFGRDGESR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +G++V +V YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 180 TALNDAGMLVTNDTGRV-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDGV- 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETEIFHKGRQLYGLYEAQVSHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 ATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G F +++ EA L F E ++ +L + K L +P +
Sbjct: 348 TLVRKEGKDAFEQRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVP-GET 406
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMK----LLI 352
LR + L N++ L + K E N QP ++ M+ LL+
Sbjct: 407 LRLYLRQQLG-------NKLGLLDDSQLDKLMPKQAENVNTYQPPQLKRTTMRILIGLLV 459
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNF 410
P L I S + +K + + +F +L++T + + + + ++ + K ++
Sbjct: 460 QNPQLATLIPSLQGVEQAKLAG--LPLFIELVETC-LAQPGLTTGQLLELYRDNKFSQQL 516
Query: 411 ESIIVK----IQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
E++ ++D E + +L D+I + R+ +
Sbjct: 517 ETLATWNHMIVEDMVEQTFVDTLTSLYDSILEQRQETL 554
>gi|170723971|ref|YP_001751659.1| DNA primase [Pseudomonas putida W619]
gi|169761974|gb|ACA75290.1| DNA primase [Pseudomonas putida W619]
Length = 660
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 188/325 (57%), Gaps = 17/325 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
AS+FY+ L++ K A+++LK RGL+ EI F LG+AP W N L + D
Sbjct: 122 AASEFYRQALRSHPTRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DPDS
Sbjct: 291 TSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSALQDGRRARFLFLPEGEDPDS 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F E++ + + ++++ L + IP ++
Sbjct: 351 LVRAEGTDAFMARINQHAQPLADYFFEQLSVEADPRSLEGKAHMATLAAPLIEKIP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK 322
LR + + L +I + ++ L +
Sbjct: 410 LRQLMRNRLKEITGLDPQQVEQLAQ 434
>gi|238796947|ref|ZP_04640451.1| DNA primase [Yersinia mollaretii ATCC 43969]
gi|238719207|gb|EEQ11019.1| DNA primase [Yersinia mollaretii ATCC 43969]
Length = 582
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 149/458 (32%), Positives = 236/458 (51%), Gaps = 37/458 (8%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ LK N+ A +LK+RGL+EEII F +G+AP W NAL + D +
Sbjct: 120 MESLSAFYQQSLKGQNANPAREYLKRRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +G++V + YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 180 TALNDAGMLVTNDTGRT-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDGV- 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETEIFHKGRQLYGLYEAQVNPPNPTRLLVVEGYMDVVALAQFGIDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 ATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G F +++ EA L F E ++ +L + K L +P +
Sbjct: 348 TLVRKEGKDAFEQRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVP-GET 406
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMK----LLI 352
LR + L N++ L + K E N QP ++ M+ LL+
Sbjct: 407 LRLYLRQQLG-------NKLGLLDDSQLDKLMPKQAENTNTYQPPQLKRTTMRILIGLLV 459
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNF 410
P L I S + +K + + +F +L++T + + + + ++ + K ++
Sbjct: 460 QNPQLATLIPSLQGVEQAKLAG--LPLFIELVETC-LAQPGLTTGQLLELYRDNKFSQQL 516
Query: 411 ESIIVK----IQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
E++ ++D E + +L D+I + R+ +
Sbjct: 517 ETLATWNHMIVEDMVEPTFVDTLASLYDSILEQRQETL 554
>gi|420700450|ref|ZP_15182586.1| DNA primase [Yersinia pestis PY-54]
gi|420717237|ref|ZP_15197013.1| DNA primase [Yersinia pestis PY-58]
gi|391590604|gb|EIS35304.1| DNA primase [Yersinia pestis PY-54]
gi|391606485|gb|EIS49212.1| DNA primase [Yersinia pestis PY-58]
Length = 491
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 149/458 (32%), Positives = 237/458 (51%), Gaps = 37/458 (8%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ LK N+K+A +LK RGL+EEII F +G+AP W NAL + D +
Sbjct: 29 MESLSAFYQQSLKGQNAKQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESR 88
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +G++V + YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 89 TALNDAGMLVTNDTGRT-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDGV- 136
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 137 PKYLNSPETEIFHKGRQLYGLYEAQVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGT 196
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 197 ATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPD 256
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G F +++ A L F E ++ +L + K L +P +
Sbjct: 257 TLVRKEGKDAFEQRMEAAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVP-GEA 315
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMK----LLI 352
LR + L N++ L + K I+ N QP ++ M+ LL+
Sbjct: 316 LRLYLRQQLG-------NKLGLLDDSQLDKLMPKQIDNANTYQPPQLKRTTMRILIGLLV 368
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNF 410
P L I S + +K + + +F +L++T + + + + ++ + K ++
Sbjct: 369 QNPQLATLIPSLQGLEQAKLAG--LPLFIELVETC-LAQPGLTTGQLLELYRDNKFSQQL 425
Query: 411 ESIIVK----IQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
E++ ++D E + +L D+I + R+ +
Sbjct: 426 ETLATWNHMIVEDMVEPTFVDTLASLYDSILEQRQETL 463
>gi|398890176|ref|ZP_10643863.1| DNA primase, catalytic core [Pseudomonas sp. GM55]
gi|398188479|gb|EJM75781.1| DNA primase, catalytic core [Pseudomonas sp. GM55]
Length = 655
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LSAAADFYRQALKSHPSRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKTNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + LS+I +S ++ L +
Sbjct: 408 ANLRTLMRQRLSEITGLSGEAVSQLAQ 434
>gi|407801338|ref|ZP_11148182.1| DNA primase [Alcanivorax sp. W11-5]
gi|407024775|gb|EKE36518.1| DNA primase [Alcanivorax sp. W11-5]
Length = 637
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/276 (42%), Positives = 167/276 (60%), Gaps = 15/276 (5%)
Query: 4 ASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINT 59
A FY+ QLK++ E A+++LK RGL+ E+ RF LG+AP + N ++ + LD + +
Sbjct: 123 ADRFYRQQLKSAPERQRAVHYLKGRGLSGEVAARFGLGFAPPGFDNLISNLSLDNHGLEQ 182
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
+GL+V + + + YD+FR RIMFPI+++ G+ IGFGGRL+ D + K
Sbjct: 183 ALEAGLLVRRD----------DTGRTYDKFRDRIMFPIRDSRGRTIGFGGRLLGD-GKPK 231
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGL+E + + +KS + + EGYMDVI ++Q G VA LGTA
Sbjct: 232 YLNSPETPVFHKGRELYGLWEWRQSRDKSPQLFVVEGYMDVIAMAQHGMPNVVATLGTAT 291
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T H K+ + ++F FDGD AGRRAA RALE L D K +FLFLPD DPD+
Sbjct: 292 TEDHAHKLFRQVDEVVFCFDGDDAGRRAAWRALESALSVLEDGKQARFLFLPDGDDPDTL 351
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTI 275
IR+ G + + EA +L F + N ++
Sbjct: 352 IRREGRESLLARAEEAPTLSHFLFSHLAEGLNTDSV 387
>gi|388259246|ref|ZP_10136420.1| DNA primase [Cellvibrio sp. BR]
gi|387937204|gb|EIK43761.1| DNA primase [Cellvibrio sp. BR]
Length = 686
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 113/277 (40%), Positives = 173/277 (62%), Gaps = 15/277 (5%)
Query: 4 ASDFYKIQLKNSK---EAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINT 59
A +FY+ QL++ +A+N+LK RGL+ + + +G+AP W N L + + + +
Sbjct: 123 ADEFYQQQLRHHPSKLQAVNYLKNRGLDGKTAKAYGVGFAPPGWDNLLKALGQNDEDKHL 182
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L G+++ + K K YDRFR RIMFPI++T G++IGFGGR++ D ++ K
Sbjct: 183 LIEGGMLIHQEQEK----------KLYDRFRHRIMFPIRDTRGRVIGFGGRVLGD-DKPK 231
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGL+EA+ A + +L+ EGYMDV+ L+QFG VA LGTAC
Sbjct: 232 YLNSPETPVFHKGQELYGLYEARLAYRELPRLLVVEGYMDVVSLAQFGIGYGVATLGTAC 291
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
H+ + YTN ++F FDGD+AGR AA RALE + D + +KFLFLP+ DPD+
Sbjct: 292 GPDHLDRAFKYTNEVVFCFDGDKAGRSAAHRALEASIDTMIDGRTVKFLFLPEGEDPDTL 351
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIK 276
+R+ G + F + + A+ + + + N++T++
Sbjct: 352 VRQIGPEKFERMIELAVPFEDYLFDAVAEGINIRTME 388
>gi|398908983|ref|ZP_10654317.1| DNA primase, catalytic core [Pseudomonas sp. GM49]
gi|398188922|gb|EJM76210.1| DNA primase, catalytic core [Pseudomonas sp. GM49]
Length = 655
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LSAAADFYRQALKSHPSRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKTNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + LS+I +S ++ L +
Sbjct: 408 ANLRTLMRQRLSEITGLSGEAVSQLAQ 434
>gi|398853791|ref|ZP_10610383.1| DNA primase, catalytic core [Pseudomonas sp. GM80]
gi|398238408|gb|EJN24137.1| DNA primase, catalytic core [Pseudomonas sp. GM80]
Length = 654
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFYK LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYKQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI++T G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLKNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRAEGTDAFKARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + LS+I +S ++ L +
Sbjct: 408 ANLRILMRQRLSEITGLSSETVSQLVQ 434
>gi|398924271|ref|ZP_10661088.1| DNA primase, catalytic core [Pseudomonas sp. GM48]
gi|398173602|gb|EJM61432.1| DNA primase, catalytic core [Pseudomonas sp. GM48]
Length = 655
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LSAAADFYRQALKSHPSRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKTNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + LS+I +S ++ L +
Sbjct: 408 ANLRTLMRQRLSEITGLSGEAVSQLAQ 434
>gi|399155118|ref|ZP_10755185.1| DNA primase [gamma proteobacterium SCGC AAA007-O20]
Length = 608
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 145/396 (36%), Positives = 216/396 (54%), Gaps = 45/396 (11%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNN 56
M+ S+FY+ QLK S K+AI++ KKRG++ I RF LGYAP W L + + + +
Sbjct: 116 MMELSNFYQSQLKQSTTKKKAIDYAKKRGISGSIAKRFELGYAPPGWINLYESYKSNEES 175
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
I L + G++V K K + YDRFR R+MFPI N G +I FGGR++ +
Sbjct: 176 IADLVTMGMLVAKEDKKNDY---------YDRFRDRLMFPIHNAKGNVIAFGGRVLSSKD 226
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPETPLF KS ELYGL+ + + Y+L+ EGYMDVI L Q G VA LG
Sbjct: 227 NPKYLNSPETPLFSKSKELYGLYHCRKYSRRIDYILVVEGYMDVIALHQQGITSAVATLG 286
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H++ + T++I+F FDGD+AGR AA +AL+ L T +IKFL LP+ DP
Sbjct: 287 TATTPAHLQTLSRSTDTIVFCFDGDKAGRAAAWKALQTSLPVITAGLVIKFLILPEGEDP 346
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKD----IEKS----------- 281
D+ I+ + F+K++ A +L F + I + +TI+ +EKS
Sbjct: 347 DTLIKHESSQSFTKRIETAQTLSSFLFDHIKSEVSFETIEGKTLFLEKSASIIHQVSYPI 406
Query: 282 --KYNIEYLFKIIPLSSSLRFKIISSLSKIIKVSF----NEINNLFKINTSSIKHKTIEK 335
+ IE + + I S K ++ ++I + +F NEIN+ ++ + +
Sbjct: 407 YRQQLIEGVAQTIGQDVSYVEKALAQSAQIKRPAFDRQVNEINDFTDLSFNKV------- 459
Query: 336 KNIQPICIEYQIMKLLIS----YPSLINEINSEDMI 367
+N+ P +M +IS YPSL+N+ S +I
Sbjct: 460 RNVSPGSKMTNLMAKMISCIINYPSLVNDPESSGVI 495
>gi|294502715|ref|YP_003566777.1| DNA primase [Yersinia pestis Z176003]
gi|420545148|ref|ZP_15043309.1| DNA primase [Yersinia pestis PY-01]
gi|420550461|ref|ZP_15048055.1| DNA primase [Yersinia pestis PY-02]
gi|420555909|ref|ZP_15052905.1| DNA primase [Yersinia pestis PY-03]
gi|420561594|ref|ZP_15057858.1| DNA primase [Yersinia pestis PY-04]
gi|420566583|ref|ZP_15062365.1| DNA primase [Yersinia pestis PY-05]
gi|420572265|ref|ZP_15067524.1| DNA primase [Yersinia pestis PY-06]
gi|420577522|ref|ZP_15072272.1| DNA primase [Yersinia pestis PY-07]
gi|420588044|ref|ZP_15081813.1| DNA primase [Yersinia pestis PY-09]
gi|420593362|ref|ZP_15086602.1| DNA primase [Yersinia pestis PY-10]
gi|420599080|ref|ZP_15091726.1| DNA primase [Yersinia pestis PY-11]
gi|420604607|ref|ZP_15096658.1| DNA primase [Yersinia pestis PY-12]
gi|420609908|ref|ZP_15101467.1| DNA primase [Yersinia pestis PY-13]
gi|420615169|ref|ZP_15106143.1| DNA primase [Yersinia pestis PY-14]
gi|420620641|ref|ZP_15110931.1| DNA primase [Yersinia pestis PY-15]
gi|420625646|ref|ZP_15115465.1| DNA primase [Yersinia pestis PY-16]
gi|420630806|ref|ZP_15120149.1| DNA primase [Yersinia pestis PY-19]
gi|420641585|ref|ZP_15129831.1| DNA primase [Yersinia pestis PY-29]
gi|420652352|ref|ZP_15139585.1| DNA primase [Yersinia pestis PY-34]
gi|420657806|ref|ZP_15144502.1| DNA primase [Yersinia pestis PY-36]
gi|420663144|ref|ZP_15149269.1| DNA primase [Yersinia pestis PY-42]
gi|420673427|ref|ZP_15158599.1| DNA primase [Yersinia pestis PY-46]
gi|420684163|ref|ZP_15168308.1| DNA primase [Yersinia pestis PY-48]
gi|420689352|ref|ZP_15172911.1| DNA primase [Yersinia pestis PY-52]
gi|420706591|ref|ZP_15187486.1| DNA primase [Yersinia pestis PY-55]
gi|420711873|ref|ZP_15192268.1| DNA primase [Yersinia pestis PY-56]
gi|420722876|ref|ZP_15201827.1| DNA primase [Yersinia pestis PY-59]
gi|420728516|ref|ZP_15206844.1| DNA primase [Yersinia pestis PY-60]
gi|420733624|ref|ZP_15211444.1| DNA primase [Yersinia pestis PY-61]
gi|420742812|ref|ZP_15219721.1| DNA primase [Yersinia pestis PY-63]
gi|420750221|ref|ZP_15226024.1| DNA primase [Yersinia pestis PY-65]
gi|420761376|ref|ZP_15235395.1| DNA primase [Yersinia pestis PY-71]
gi|420771567|ref|ZP_15244568.1| DNA primase [Yersinia pestis PY-76]
gi|420776890|ref|ZP_15249361.1| DNA primase [Yersinia pestis PY-88]
gi|420782398|ref|ZP_15254190.1| DNA primase [Yersinia pestis PY-89]
gi|420787812|ref|ZP_15258946.1| DNA primase [Yersinia pestis PY-90]
gi|420793286|ref|ZP_15263877.1| DNA primase [Yersinia pestis PY-91]
gi|420798440|ref|ZP_15268506.1| DNA primase [Yersinia pestis PY-92]
gi|420808988|ref|ZP_15278029.1| DNA primase [Yersinia pestis PY-94]
gi|420814799|ref|ZP_15283240.1| DNA primase [Yersinia pestis PY-95]
gi|420819939|ref|ZP_15287892.1| DNA primase [Yersinia pestis PY-96]
gi|420825006|ref|ZP_15292429.1| DNA primase [Yersinia pestis PY-98]
gi|420835600|ref|ZP_15301987.1| DNA primase [Yersinia pestis PY-100]
gi|420840771|ref|ZP_15306672.1| DNA primase [Yersinia pestis PY-101]
gi|420846362|ref|ZP_15311730.1| DNA primase [Yersinia pestis PY-102]
gi|420857283|ref|ZP_15321189.1| DNA primase [Yersinia pestis PY-113]
gi|294353174|gb|ADE63515.1| DNA primase [Yersinia pestis Z176003]
gi|391431800|gb|EIQ93313.1| DNA primase [Yersinia pestis PY-01]
gi|391432836|gb|EIQ94239.1| DNA primase [Yersinia pestis PY-02]
gi|391435492|gb|EIQ96544.1| DNA primase [Yersinia pestis PY-03]
gi|391447730|gb|EIR07612.1| DNA primase [Yersinia pestis PY-04]
gi|391448736|gb|EIR08520.1| DNA primase [Yersinia pestis PY-05]
gi|391451408|gb|EIR10906.1| DNA primase [Yersinia pestis PY-06]
gi|391464053|gb|EIR22388.1| DNA primase [Yersinia pestis PY-07]
gi|391467541|gb|EIR25512.1| DNA primase [Yersinia pestis PY-09]
gi|391480802|gb|EIR37404.1| DNA primase [Yersinia pestis PY-10]
gi|391481698|gb|EIR38209.1| DNA primase [Yersinia pestis PY-11]
gi|391481896|gb|EIR38388.1| DNA primase [Yersinia pestis PY-12]
gi|391496212|gb|EIR51189.1| DNA primase [Yersinia pestis PY-13]
gi|391496700|gb|EIR51619.1| DNA primase [Yersinia pestis PY-15]
gi|391500263|gb|EIR54785.1| DNA primase [Yersinia pestis PY-14]
gi|391511817|gb|EIR65188.1| DNA primase [Yersinia pestis PY-16]
gi|391513574|gb|EIR66777.1| DNA primase [Yersinia pestis PY-19]
gi|391527295|gb|EIR79218.1| DNA primase [Yersinia pestis PY-29]
gi|391530165|gb|EIR81774.1| DNA primase [Yersinia pestis PY-34]
gi|391544362|gb|EIR94589.1| DNA primase [Yersinia pestis PY-36]
gi|391545956|gb|EIR95991.1| DNA primase [Yersinia pestis PY-42]
gi|391560554|gb|EIS09168.1| DNA primase [Yersinia pestis PY-46]
gi|391563758|gb|EIS12031.1| DNA primase [Yersinia pestis PY-48]
gi|391575919|gb|EIS22557.1| DNA primase [Yersinia pestis PY-52]
gi|391588187|gb|EIS33259.1| DNA primase [Yersinia pestis PY-55]
gi|391591867|gb|EIS36380.1| DNA primase [Yersinia pestis PY-56]
gi|391605109|gb|EIS48035.1| DNA primase [Yersinia pestis PY-60]
gi|391607352|gb|EIS49960.1| DNA primase [Yersinia pestis PY-59]
gi|391609963|gb|EIS52308.1| DNA primase [Yersinia pestis PY-63]
gi|391619332|gb|EIS60608.1| DNA primase [Yersinia pestis PY-61]
gi|391630915|gb|EIS70608.1| DNA primase [Yersinia pestis PY-65]
gi|391642218|gb|EIS80523.1| DNA primase [Yersinia pestis PY-71]
gi|391654697|gb|EIS91512.1| DNA primase [Yersinia pestis PY-76]
gi|391661381|gb|EIS97430.1| DNA primase [Yersinia pestis PY-88]
gi|391666312|gb|EIT01796.1| DNA primase [Yersinia pestis PY-89]
gi|391668157|gb|EIT03418.1| DNA primase [Yersinia pestis PY-90]
gi|391672555|gb|EIT07358.1| DNA primase [Yersinia pestis PY-91]
gi|391687306|gb|EIT20636.1| DNA primase [Yersinia pestis PY-92]
gi|391688450|gb|EIT21660.1| DNA primase [Yersinia pestis PY-94]
gi|391700066|gb|EIT32198.1| DNA primase [Yersinia pestis PY-95]
gi|391703363|gb|EIT35133.1| DNA primase [Yersinia pestis PY-96]
gi|391704175|gb|EIT35854.1| DNA primase [Yersinia pestis PY-98]
gi|391719821|gb|EIT49893.1| DNA primase [Yersinia pestis PY-100]
gi|391720254|gb|EIT50293.1| DNA primase [Yersinia pestis PY-101]
gi|391730938|gb|EIT59700.1| DNA primase [Yersinia pestis PY-102]
gi|391737022|gb|EIT64948.1| DNA primase [Yersinia pestis PY-113]
Length = 508
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 149/458 (32%), Positives = 237/458 (51%), Gaps = 37/458 (8%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ LK N+K+A +LK RGL+EEII F +G+AP W NAL + D +
Sbjct: 46 MESLSAFYQQSLKGQNAKQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESR 105
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +G++V + YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 106 TALNDAGMLVTNDTGRT-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDGV- 153
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 154 PKYLNSPETEIFHKGRQLYGLYEAQVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGT 213
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 214 ATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPD 273
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G F +++ A L F E ++ +L + K L +P +
Sbjct: 274 TLVRKEGKDAFEQRMEAAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVP-GEA 332
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMK----LLI 352
LR + L N++ L + K I+ N QP ++ M+ LL+
Sbjct: 333 LRLYLRQQLG-------NKLGLLDDSQLDKLMPKQIDNANTYQPPQLKRTTMRILIGLLV 385
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNF 410
P L I S + +K + + +F +L++T + + + + ++ + K ++
Sbjct: 386 QNPQLATLIPSLQGLEQAKLAG--LPLFIELVETC-LAQPGLTTGQLLELYRDNKFSQQL 442
Query: 411 ESIIVK----IQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
E++ ++D E + +L D+I + R+ +
Sbjct: 443 ETLATWNHMIVEDMVEPTFVDTLASLYDSILEQRQETL 480
>gi|429462738|ref|YP_007184201.1| DNA primase 1 [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
gi|429338252|gb|AFZ82675.1| DNA primase 1 [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
Length = 451
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 125/269 (46%), Positives = 174/269 (64%), Gaps = 15/269 (5%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A ++Y L S A+N+L KR +++E I F +G++ E N L+K F +YN+ +L
Sbjct: 121 AQEYYHSYLLKSSNALNYLSKRKIHKETIELFGIGWSGFETNFLSKCFDNYNDA-SLKEV 179
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV+D+ +RYDRFR RIMFPI+N G +IGFGGR I D KY+NS
Sbjct: 180 GLVIDET-------------RRYDRFRQRIMFPIRNYYGNVIGFGGRTI-DRRLPKYLNS 225
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET LF K ELYGL+E++ I+K G+VL+ EGY+DVI L+Q+G VA LGT+ +S H
Sbjct: 226 PETILFSKRKELYGLWESRKNIKKQGFVLVVEGYIDVIILTQYGITNVVATLGTSISSDH 285
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I K+ T+ IIFSFDGD AG RAA RAL +CL D++ I+FL L + YDPDSYI ++
Sbjct: 286 IIKLFSITDKIIFSFDGDDAGHRAAWRALLICLKELKDNREIRFLILKENYDPDSYILEY 345
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
G F + + ++SL +FF+ E+ +N+
Sbjct: 346 GVHKFKEIIDNSISLSKFFINEMQKKHNI 374
>gi|269469020|gb|EEZ80584.1| DNA primase [uncultured SUP05 cluster bacterium]
Length = 611
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 121/280 (43%), Positives = 169/280 (60%), Gaps = 13/280 (4%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNN 56
M S+FY+ QLK S K+ + + K RGL EI RF+LG+AP W++L F +
Sbjct: 116 MQEVSEFYQSQLKKSPAKKKVVTYAKNRGLTGEIAKRFDLGFAPPGWSSLFDHFKHNLEV 175
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ L GL+V K +K + YDRFR R+MFPI N G II FGGR++ + +
Sbjct: 176 VKDLEEMGLLVAK---------KEKKGEYYDRFRDRLMFPIHNAKGDIIAFGGRVLSEED 226
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHKS ELYGL A+ Y+L+ EGYMDV+ L Q G TVA LG
Sbjct: 227 KPKYLNSPETPIFHKSRELYGLHHARKHSRSIDYILVVEGYMDVVALHQSGITCTVATLG 286
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H++ + T++IIF FDGD+AGR AA +AL++ L I+KFLFLPD DP
Sbjct: 287 TATTPEHLQTLSRTTDTIIFCFDGDRAGRAAAWKALQIALPVIKSGLIVKFLFLPDGEDP 346
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIK 276
D+ ++K K F ++ ++ L +F + I + + TI+
Sbjct: 347 DTLVKKESSKAFEARIEKSHPLSKFLFDHIKVEVDFDTIE 386
>gi|398873129|ref|ZP_10628394.1| DNA primase, catalytic core [Pseudomonas sp. GM74]
gi|398200414|gb|EJM87326.1| DNA primase, catalytic core [Pseudomonas sp. GM74]
Length = 655
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 186/327 (56%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+ +LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LSAAADFYRQALKSHPSRKAAVEYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKTNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + LS+I +S ++ L +
Sbjct: 408 ANLRTLMRQRLSEITGLSGEAVSQLAQ 434
>gi|397694924|ref|YP_006532805.1| DNA primase [Pseudomonas putida DOT-T1E]
gi|421524960|ref|ZP_15971581.1| DNA primase [Pseudomonas putida LS46]
gi|397331654|gb|AFO48013.1| DNA primase [Pseudomonas putida DOT-T1E]
gi|402751423|gb|EJX11936.1| DNA primase [Pseudomonas putida LS46]
Length = 660
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 192/333 (57%), Gaps = 19/333 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
AS+FY+ L++ K A+++LK RGL+ EI F LG+AP W N L + D
Sbjct: 122 AASEFYRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DPDS
Sbjct: 291 TSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDPDS 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F E++ + + ++++ L + IP ++
Sbjct: 351 LVRAEGTDAFMARINQHAQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK--INTSSI 328
LR + + L +I + ++ L + TSS+
Sbjct: 410 LRQLMRNRLKEITGLDPQQVEQLAQQAPATSSM 442
>gi|378953249|ref|YP_005210737.1| protein DnaG [Pseudomonas fluorescens F113]
gi|359763263|gb|AEV65342.1| DnaG [Pseudomonas fluorescens F113]
Length = 652
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 187/326 (57%), Gaps = 19/326 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K L + +
Sbjct: 120 LTAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYK-HLSSDTL 178
Query: 58 NTLA--SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDS 115
A +GL+++ E KRYDRFR R+MFPI++T G+II FGGR++ D
Sbjct: 179 QQRAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGD- 227
Query: 116 NEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAIL 175
++ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA L
Sbjct: 228 DKPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATL 287
Query: 176 GTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYD 235
GTA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ D
Sbjct: 288 GTATSEEHMKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGED 347
Query: 236 PDSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL 294
PD+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 348 PDTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP- 406
Query: 295 SSSLRFKIISSLSKIIKVSFNEINNL 320
++LR + L++I ++ +N L
Sbjct: 407 GANLRTLMRQRLTEITGLNSEAVNQL 432
>gi|312963433|ref|ZP_07777915.1| DNA primase [Pseudomonas fluorescens WH6]
gi|311282239|gb|EFQ60838.1| DNA primase [Pseudomonas fluorescens WH6]
Length = 656
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 185/325 (56%), Gaps = 17/325 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+V+ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLVENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHMKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRAEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL 320
++LR + L +I +S ++ L
Sbjct: 408 ANLRTLMRQRLLEITGLSGEAVSQL 432
>gi|387895985|ref|YP_006326282.1| DNA primase [Pseudomonas fluorescens A506]
gi|387163968|gb|AFJ59167.1| DNA primase [Pseudomonas fluorescens A506]
Length = 656
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 185/325 (56%), Gaps = 17/325 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+V+ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLVENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL 320
++LR + L +I +S ++ L
Sbjct: 408 ANLRTLMRQRLLEITGLSGEAVSQL 432
>gi|229592967|ref|YP_002875086.1| DNA primase [Pseudomonas fluorescens SBW25]
gi|229364833|emb|CAY52871.1| DNA primase [Pseudomonas fluorescens SBW25]
Length = 656
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 185/325 (56%), Gaps = 17/325 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+V+ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLVENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL 320
++LR + L +I +S ++ L
Sbjct: 408 ANLRTLMRQRLLEITGLSGEAVSQL 432
>gi|425901947|ref|ZP_18878538.1| DNA primase [Pseudomonas chlororaphis subsp. aureofaciens 30-84]
gi|397892666|gb|EJL09143.1| DNA primase [Pseudomonas chlororaphis subsp. aureofaciens 30-84]
Length = 654
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 187/325 (57%), Gaps = 17/325 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+D+Y+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADYYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDQAGRKAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTDEADPRSLEGKAHLATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL 320
++LR + LS+I ++ +N L
Sbjct: 408 ANLRTLMRQRLSEITGLNNETVNQL 432
>gi|395651015|ref|ZP_10438865.1| DNA primase [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 656
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 185/325 (56%), Gaps = 17/325 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+V+ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLVENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL 320
++LR + L +I +S ++ L
Sbjct: 408 ANLRTLMRQRLLEITGLSGEAVSQL 432
>gi|420803808|ref|ZP_15273342.1| DNA primase [Yersinia pestis PY-93]
gi|391685840|gb|EIT19328.1| DNA primase [Yersinia pestis PY-93]
Length = 508
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 149/458 (32%), Positives = 237/458 (51%), Gaps = 37/458 (8%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ LK N+K+A +LK RGL+EEII F +G+AP W NAL + D +
Sbjct: 46 MESLSAFYQQSLKGQNAKQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESR 105
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +G++V + YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 106 TALNDAGMLVTNDTGRT-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDGV- 153
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 154 PKYLNSPETEIFHKGRQLYGLYEAQVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGT 213
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 214 ATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPD 273
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G F +++ A L F E ++ +L + K L +P +
Sbjct: 274 TLVRKEGKDAFEQRMEAAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVP-GEA 332
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMK----LLI 352
LR + L N++ L + K I+ N QP ++ M+ LL+
Sbjct: 333 LRLYLRQQLG-------NKLGLLDDSQLDKLMPKQIDNANPYQPPQLKRTTMRILIGLLV 385
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNF 410
P L I S + +K + + +F +L++T + + + + ++ + K ++
Sbjct: 386 QNPQLATLIPSLQGLEQAKLAG--LPLFIELVETC-LAQPGLTTGQLLELYRDNKFSQQL 442
Query: 411 ESIIVK----IQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
E++ ++D E + +L D+I + R+ +
Sbjct: 443 ETLATWNHMIVEDMVEPTFVDTLASLYDSILEQRQETL 480
>gi|330812145|ref|YP_004356607.1| DNA primase [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|423699701|ref|ZP_17674191.1| DNA primase [Pseudomonas fluorescens Q8r1-96]
gi|327380253|gb|AEA71603.1| DNA primase [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|387996306|gb|EIK57636.1| DNA primase [Pseudomonas fluorescens Q8r1-96]
Length = 652
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 187/326 (57%), Gaps = 19/326 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K L + +
Sbjct: 120 LTAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYK-HLSSDTL 178
Query: 58 NTLA--SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDS 115
A +GL+++ E KRYDRFR R+MFPI++T G+II FGGR++ D
Sbjct: 179 QQRAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGD- 227
Query: 116 NEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAIL 175
++ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA L
Sbjct: 228 DKPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATL 287
Query: 176 GTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYD 235
GTA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ D
Sbjct: 288 GTATSEEHMKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGED 347
Query: 236 PDSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL 294
PD+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 348 PDTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP- 406
Query: 295 SSSLRFKIISSLSKIIKVSFNEINNL 320
++LR + L++I ++ +N L
Sbjct: 407 GANLRTLMRQRLTEITGLNSEAVNQL 432
>gi|395446768|ref|YP_006387021.1| DNA primase [Pseudomonas putida ND6]
gi|388560765|gb|AFK69906.1| DNA primase [Pseudomonas putida ND6]
Length = 660
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 192/333 (57%), Gaps = 19/333 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
AS+FY+ L++ K A+++LK RGL+ EI F LG+AP W N L + D
Sbjct: 122 AASEFYRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLYEARKHNRNLEEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DPDS
Sbjct: 291 TSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDPDS 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F E++ + + ++++ L + IP ++
Sbjct: 351 LVRAEGTDAFMARINQHAQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK--INTSSI 328
LR + + L +I + ++ L + TSS+
Sbjct: 410 LRQLMRNRLKEITGLDPQQVEQLAQQAPATSSM 442
>gi|389680914|ref|ZP_10172260.1| DNA primase [Pseudomonas chlororaphis O6]
gi|388555203|gb|EIM18450.1| DNA primase [Pseudomonas chlororaphis O6]
Length = 654
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 187/325 (57%), Gaps = 17/325 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+D+Y+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADYYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDQAGRKAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTDEADPRSLEGKAHLATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL 320
++LR + LS+I ++ +N L
Sbjct: 408 ANLRTLMRQRLSEITGLNNETVNQL 432
>gi|440737976|ref|ZP_20917526.1| DNA primase [Pseudomonas fluorescens BRIP34879]
gi|440381551|gb|ELQ18078.1| DNA primase [Pseudomonas fluorescens BRIP34879]
Length = 656
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 126/326 (38%), Positives = 186/326 (57%), Gaps = 19/326 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K L N +
Sbjct: 120 LTAAADFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYK-HLSSNTL 178
Query: 58 NTLA--SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDS 115
A +GL+V+ E KRYDRFR R+MFPI+++ G+II FGGR++ D
Sbjct: 179 QQKAMIDAGLLVENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD- 227
Query: 116 NEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAIL 175
++ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA L
Sbjct: 228 DKPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATL 287
Query: 176 GTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYD 235
GTA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ D
Sbjct: 288 GTATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGED 347
Query: 236 PDSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL 294
PD+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 348 PDTLVRAEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP- 406
Query: 295 SSSLRFKIISSLSKIIKVSFNEINNL 320
++LR + L +I +S ++ L
Sbjct: 407 GANLRTLMRQRLLEITGLSGEAVSQL 432
>gi|398841883|ref|ZP_10599089.1| DNA primase, catalytic core [Pseudomonas sp. GM102]
gi|398107247|gb|EJL97253.1| DNA primase, catalytic core [Pseudomonas sp. GM102]
Length = 657
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPSRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + LS+I +S ++ L +
Sbjct: 408 ANLRILMRQRLSEITGLSGEAVSQLVQ 434
>gi|359786792|ref|ZP_09289880.1| DNA primase [Halomonas sp. GFAJ-1]
gi|359295899|gb|EHK60156.1| DNA primase [Halomonas sp. GFAJ-1]
Length = 625
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 183/318 (57%), Gaps = 18/318 (5%)
Query: 4 ASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI--NT 59
A+ FY+ +LK + A +L+ RGL+ E++ + +GYAP W AL K L I +
Sbjct: 124 AASFYRERLKMQEGQSAQRYLQGRGLSPEVVSTYGIGYAPGGWEAL-KQHLSAKGIGESV 182
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
GL++ + + + YDRFR R+MFPI++ G+ I FGGR++ D + K
Sbjct: 183 QVEYGLLIHRE----------DTGRTYDRFRDRVMFPIRDLRGRTIAFGGRVMGD-EQPK 231
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGL+EA+ + K ++I EGYMDV+ L+Q+G VA LGTA
Sbjct: 232 YLNSPETPVFHKGRELYGLYEARQSSSKLEQLVIVEGYMDVVALAQYGINNAVATLGTAT 291
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T H+ ++ + ++F FDGD+AGR+AA RALE L D + +FLFLP+ DPD+
Sbjct: 292 TEDHLSRLFRVVSRVVFCFDGDRAGRQAASRALETALPLMIDGREARFLFLPEGDDPDTL 351
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP--LSSS 297
+R+ G + F +V AM L +F E+ +L T++ E+ + +P + S
Sbjct: 352 VRREGSEAFQNRVTCAMPLSEFLFEQAAQGRDLNTVEGRERFASQVLEALSKVPEGMLKS 411
Query: 298 LRFKIISSLSKIIKVSFN 315
L F+ ++ S + + +
Sbjct: 412 LLFEALAKRSGLAQAQLH 429
>gi|22127410|ref|NP_670833.1| DNA primase [Yersinia pestis KIM10+]
gi|45442722|ref|NP_994261.1| DNA primase [Yersinia pestis biovar Microtus str. 91001]
gi|51597715|ref|YP_071906.1| DNA primase [Yersinia pseudotuberculosis IP 32953]
gi|108809137|ref|YP_653053.1| DNA primase [Yersinia pestis Antiqua]
gi|108810669|ref|YP_646436.1| DNA primase [Yersinia pestis Nepal516]
gi|145597738|ref|YP_001161814.1| DNA primase [Yersinia pestis Pestoides F]
gi|150260324|ref|ZP_01917052.1| DNA primase [Yersinia pestis CA88-4125]
gi|153949220|ref|YP_001399547.1| DNA primase [Yersinia pseudotuberculosis IP 31758]
gi|162421855|ref|YP_001604919.1| DNA primase [Yersinia pestis Angola]
gi|165925043|ref|ZP_02220875.1| DNA primase [Yersinia pestis biovar Orientalis str. F1991016]
gi|165937795|ref|ZP_02226356.1| DNA primase [Yersinia pestis biovar Orientalis str. IP275]
gi|166008682|ref|ZP_02229580.1| DNA primase [Yersinia pestis biovar Antiqua str. E1979001]
gi|166211888|ref|ZP_02237923.1| DNA primase [Yersinia pestis biovar Antiqua str. B42003004]
gi|167398969|ref|ZP_02304493.1| DNA primase [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167419153|ref|ZP_02310906.1| DNA primase [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167425189|ref|ZP_02316942.1| DNA primase [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|170022886|ref|YP_001719391.1| DNA primase [Yersinia pseudotuberculosis YPIII]
gi|186896859|ref|YP_001873971.1| DNA primase [Yersinia pseudotuberculosis PB1/+]
gi|218927837|ref|YP_002345712.1| DNA primase [Yersinia pestis CO92]
gi|229837322|ref|ZP_04457485.1| DNA primase [Yersinia pestis Pestoides A]
gi|229840534|ref|ZP_04460693.1| DNA primase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229842918|ref|ZP_04463069.1| DNA primase [Yersinia pestis biovar Orientalis str. India 195]
gi|229900862|ref|ZP_04515986.1| DNA primase [Yersinia pestis Nepal516]
gi|270487762|ref|ZP_06204836.1| DNA primase [Yersinia pestis KIM D27]
gi|384137369|ref|YP_005520071.1| DNA primase [Yersinia pestis A1122]
gi|384416293|ref|YP_005625655.1| DNA primase [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|420582940|ref|ZP_15077212.1| DNA primase [Yersinia pestis PY-08]
gi|420635987|ref|ZP_15124777.1| DNA primase [Yersinia pestis PY-25]
gi|420645732|ref|ZP_15133637.1| DNA primase [Yersinia pestis PY-32]
gi|420646673|ref|ZP_15134489.1| DNA primase [Yersinia pestis PY-32]
gi|420668198|ref|ZP_15153845.1| DNA primase [Yersinia pestis PY-45]
gi|420678935|ref|ZP_15163606.1| DNA primase [Yersinia pestis PY-47]
gi|420695156|ref|ZP_15177985.1| DNA primase [Yersinia pestis PY-53]
gi|420755313|ref|ZP_15230539.1| DNA primase [Yersinia pestis PY-66]
gi|420766548|ref|ZP_15240072.1| DNA primase [Yersinia pestis PY-72]
gi|420830800|ref|ZP_15297654.1| DNA primase [Yersinia pestis PY-99]
gi|420851719|ref|ZP_15316488.1| DNA primase [Yersinia pestis PY-103]
gi|421762075|ref|ZP_16198874.1| DNA primase [Yersinia pestis INS]
gi|21960499|gb|AAM87084.1|AE013956_9 DNA primase [Yersinia pestis KIM10+]
gi|45437588|gb|AAS63138.1| DNA primase [Yersinia pestis biovar Microtus str. 91001]
gi|51590997|emb|CAH22655.1| DNA primase [Yersinia pseudotuberculosis IP 32953]
gi|108774317|gb|ABG16836.1| DNA primase [Yersinia pestis Nepal516]
gi|108781050|gb|ABG15108.1| DNA primase [Yersinia pestis Antiqua]
gi|115346448|emb|CAL19321.1| DNA primase [Yersinia pestis CO92]
gi|145209434|gb|ABP38841.1| DNA primase [Yersinia pestis Pestoides F]
gi|149289732|gb|EDM39809.1| DNA primase [Yersinia pestis CA88-4125]
gi|152960715|gb|ABS48176.1| DNA primase [Yersinia pseudotuberculosis IP 31758]
gi|162354670|gb|ABX88618.1| DNA primase [Yersinia pestis Angola]
gi|165914207|gb|EDR32823.1| DNA primase [Yersinia pestis biovar Orientalis str. IP275]
gi|165923243|gb|EDR40394.1| DNA primase [Yersinia pestis biovar Orientalis str. F1991016]
gi|165992021|gb|EDR44322.1| DNA primase [Yersinia pestis biovar Antiqua str. E1979001]
gi|166206634|gb|EDR51114.1| DNA primase [Yersinia pestis biovar Antiqua str. B42003004]
gi|166963147|gb|EDR59168.1| DNA primase [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167051473|gb|EDR62881.1| DNA primase [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167055952|gb|EDR65733.1| DNA primase [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|169749420|gb|ACA66938.1| DNA primase [Yersinia pseudotuberculosis YPIII]
gi|186699885|gb|ACC90514.1| DNA primase [Yersinia pseudotuberculosis PB1/+]
gi|229682201|gb|EEO78293.1| DNA primase [Yersinia pestis Nepal516]
gi|229689984|gb|EEO82042.1| DNA primase [Yersinia pestis biovar Orientalis str. India 195]
gi|229696900|gb|EEO86947.1| DNA primase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229705445|gb|EEO91455.1| DNA primase [Yersinia pestis Pestoides A]
gi|270336266|gb|EFA47043.1| DNA primase [Yersinia pestis KIM D27]
gi|320016797|gb|ADW00369.1| DNA primase [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|342852498|gb|AEL71051.1| DNA primase [Yersinia pestis A1122]
gi|391465470|gb|EIR23664.1| DNA primase [Yersinia pestis PY-08]
gi|391515671|gb|EIR68637.1| DNA primase [Yersinia pestis PY-25]
gi|391531338|gb|EIR82837.1| DNA primase [Yersinia pestis PY-32]
gi|391533907|gb|EIR85145.1| DNA primase [Yersinia pestis PY-32]
gi|391546757|gb|EIR96718.1| DNA primase [Yersinia pestis PY-45]
gi|391561743|gb|EIS10245.1| DNA primase [Yersinia pestis PY-47]
gi|391576624|gb|EIS23153.1| DNA primase [Yersinia pestis PY-53]
gi|391644911|gb|EIS82855.1| DNA primase [Yersinia pestis PY-72]
gi|391647147|gb|EIS84810.1| DNA primase [Yersinia pestis PY-66]
gi|391714226|gb|EIT44903.1| DNA primase [Yersinia pestis PY-99]
gi|391733429|gb|EIT61816.1| DNA primase [Yersinia pestis PY-103]
gi|411177616|gb|EKS47629.1| DNA primase [Yersinia pestis INS]
Length = 582
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 149/458 (32%), Positives = 237/458 (51%), Gaps = 37/458 (8%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ LK N+K+A +LK RGL+EEII F +G+AP W NAL + D +
Sbjct: 120 MESLSAFYQQSLKGQNAKQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +G++V + YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 180 TALNDAGMLVTNDTGRT-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDGV- 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETEIFHKGRQLYGLYEAQVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 ATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G F +++ A L F E ++ +L + K L +P +
Sbjct: 348 TLVRKEGKDAFEQRMEAAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVP-GEA 406
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMK----LLI 352
LR + L N++ L + K I+ N QP ++ M+ LL+
Sbjct: 407 LRLYLRQQLG-------NKLGLLDDSQLDKLMPKQIDNANTYQPPQLKRTTMRILIGLLV 459
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNF 410
P L I S + +K + + +F +L++T + + + + ++ + K ++
Sbjct: 460 QNPQLATLIPSLQGLEQAKLAG--LPLFIELVETC-LAQPGLTTGQLLELYRDNKFSQQL 516
Query: 411 ESIIVK----IQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
E++ ++D E + +L D+I + R+ +
Sbjct: 517 ETLATWNHMIVEDMVEPTFVDTLASLYDSILEQRQETL 554
>gi|423093351|ref|ZP_17081147.1| DNA primase [Pseudomonas fluorescens Q2-87]
gi|397882876|gb|EJK99363.1| DNA primase [Pseudomonas fluorescens Q2-87]
Length = 652
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 187/326 (57%), Gaps = 19/326 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K L + +
Sbjct: 120 LTAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYK-HLSSDTL 178
Query: 58 NTLA--SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDS 115
A +GL+++ E KRYDRFR R+MFPI++T G+II FGGR++ D
Sbjct: 179 QQRAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGD- 227
Query: 116 NEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAIL 175
++ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA L
Sbjct: 228 DKPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATL 287
Query: 176 GTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYD 235
GTA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ D
Sbjct: 288 GTATSEEHMKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGED 347
Query: 236 PDSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL 294
PD+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 348 PDTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP- 406
Query: 295 SSSLRFKIISSLSKIIKVSFNEINNL 320
++LR + L++I ++ +N L
Sbjct: 407 GANLRTLMRQRLTEITGLNSEAVNQL 432
>gi|423693921|ref|ZP_17668441.1| DNA primase [Pseudomonas fluorescens SS101]
gi|388001588|gb|EIK62917.1| DNA primase [Pseudomonas fluorescens SS101]
Length = 656
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 185/325 (56%), Gaps = 17/325 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+V+ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLVENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL 320
++LR + L +I +S ++ L
Sbjct: 408 ANLRTLMRQRLLEITGLSGEAVSQL 432
>gi|407368260|ref|ZP_11114792.1| DNA primase [Pseudomonas mandelii JR-1]
Length = 659
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPSRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMVDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEAALPCLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I +S ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLSGEAVSQLVQ 434
>gi|238760056|ref|ZP_04621207.1| DNA primase [Yersinia aldovae ATCC 35236]
gi|238701743|gb|EEP94309.1| DNA primase [Yersinia aldovae ATCC 35236]
Length = 582
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 148/458 (32%), Positives = 236/458 (51%), Gaps = 37/458 (8%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ LK + +A +LK RGL+EEII F +G+AP+ W NAL + D +
Sbjct: 120 MESLSGFYQQSLKGQTANQAREYLKHRGLSEEIIQHFAIGFAPSGWDNALKRFGRDGESR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +G++V +V YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 180 TALNDAGMLVTNDTGRV-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDGV- 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETEIFHKGRQLYGLYEAQVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 ATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G F +++ A L F E ++ +L + K L +P +
Sbjct: 348 TLVRKEGKDAFEQRMEGAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLITQVP-GET 406
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMK----LLI 352
LR + L N++ L + K E N QP ++ M+ LL+
Sbjct: 407 LRLYLRQQLG-------NKLGLLDDSQLDKLMPKQAENANTYQPPQLKRTTMRILIGLLV 459
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNF 410
P L I S + +K + + +F +L++T + + + + ++ + K ++
Sbjct: 460 QNPQLATLIPSLQGVEQAKLAG--LPLFIELVETC-LAQPGLTTGQLLELYRDNKFSQQL 516
Query: 411 ESIIVK----IQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
E++ ++D E + +L D+I + R+ +
Sbjct: 517 ETLATWNHMIVEDRVEQTFVDTLTSLYDSILEQRQETL 554
>gi|336451151|ref|ZP_08621596.1| DNA primase, catalytic core [Idiomarina sp. A28L]
gi|336281996|gb|EGN75242.1| DNA primase, catalytic core [Idiomarina sp. A28L]
Length = 582
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/378 (36%), Positives = 211/378 (55%), Gaps = 28/378 (7%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M + F+ QLK + + I +LK RGL+ E++ F +GYAP EW+A+ + F + N
Sbjct: 121 MEACAKFFARQLKENPDKDKVIEYLKGRGLSGEVVRDFGIGYAPKEWDAVLRKFGENRN- 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L+ K+I + ++ KR+D FR RIMFPI++ G+++GFGGR+I+ S E
Sbjct: 180 ---QQDQLLALKMITENDRG------KRFDFFRDRIMFPIRDRRGRVVGFGGRVIEKS-E 229
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET LFHK ELYG FE + + V+I EGYMDV+ L+Q G VA LGT
Sbjct: 230 PKYLNSPETRLFHKGRELYGFFEMRRQHKDLERVIIVEGYMDVVALAQHGVTNAVAALGT 289
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ H++ + I+ FDGD+AGR AA RALE L D ++FLFLPD DPD
Sbjct: 290 AATTDHLQLLFRQAKQIVCCFDGDRAGRDAAWRALENALSLLRDGTDLRFLFLPDGEDPD 349
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +R G + F+K+V AMS +F + + + +L+T D KS+ + I ++S
Sbjct: 350 TVVRAEGSEGFNKRVEGAMSFRDYFFDHLTSSIDLRT--DAGKSELIAQARELIGRVASD 407
Query: 298 L-RFKIISSLSKIIKVSFNEINNLFKI--NTSSIKHKTIEKKNIQPICIEYQIMKLLISY 354
R ++ L+K + + E+ + N+ S + + + P+ + + LL+ +
Sbjct: 408 FYRSMLMEELAKRLSRTVQELEKMVPSPNNSGSERKSAAKGPKVTPVT---RAIGLLVQH 464
Query: 355 PSL------INEINSEDM 366
P L NE++S +M
Sbjct: 465 PELGRSIPVHNELDSLNM 482
>gi|398883032|ref|ZP_10637993.1| DNA primase, catalytic core [Pseudomonas sp. GM60]
gi|398197605|gb|EJM84581.1| DNA primase, catalytic core [Pseudomonas sp. GM60]
Length = 659
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 186/327 (56%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPSRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMVDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + LS+I +S + L +
Sbjct: 408 ANLRILMRKRLSEITGLSGEAVTQLVQ 434
>gi|398875236|ref|ZP_10630414.1| DNA primase, catalytic core [Pseudomonas sp. GM67]
gi|398208166|gb|EJM94904.1| DNA primase, catalytic core [Pseudomonas sp. GM67]
Length = 659
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 186/327 (56%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPSRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMVDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + LS+I +S + L +
Sbjct: 408 ANLRILMRKRLSEITGLSGEAVTQLVQ 434
>gi|398981208|ref|ZP_10689392.1| DNA primase, catalytic core [Pseudomonas sp. GM25]
gi|398133926|gb|EJM23107.1| DNA primase, catalytic core [Pseudomonas sp. GM25]
Length = 655
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI++T G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ IR G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLIRAEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I +S ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLSSESVSQLAQ 434
>gi|398997185|ref|ZP_10700015.1| DNA primase, catalytic core [Pseudomonas sp. GM21]
gi|398124678|gb|EJM14184.1| DNA primase, catalytic core [Pseudomonas sp. GM21]
Length = 658
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPSRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMVDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I +S ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLSGEAVSQLVQ 434
>gi|398967710|ref|ZP_10682060.1| DNA primase, catalytic core [Pseudomonas sp. GM30]
gi|398144471|gb|EJM33303.1| DNA primase, catalytic core [Pseudomonas sp. GM30]
Length = 654
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI++T G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRAEGTDAFKARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I +S ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLSSETVSQLAQ 434
>gi|398844526|ref|ZP_10601588.1| DNA primase, catalytic core [Pseudomonas sp. GM84]
gi|398254463|gb|EJN39558.1| DNA primase, catalytic core [Pseudomonas sp. GM84]
Length = 660
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 187/325 (57%), Gaps = 17/325 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
A++FY+ L++ K A+ +LK RGL+ EI F LG+AP W N L + D
Sbjct: 122 AAAEFYRQALRSHPTRKAAVEYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DPDS
Sbjct: 291 TSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSALQDGRRARFLFLPEGEDPDS 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F E++ + + ++++ L + IP ++
Sbjct: 351 LVRAEGTDAFMARINQHAQPLADYFFEQLSVEADPRSLEGKAHMATLAAPLIEKIP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK 322
LR + + L +I + ++ L +
Sbjct: 410 LRQLMRNRLKEITGLDPQQVEQLAQ 434
>gi|325273044|ref|ZP_08139354.1| DNA primase [Pseudomonas sp. TJI-51]
gi|324101817|gb|EGB99353.1| DNA primase [Pseudomonas sp. TJI-51]
Length = 659
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 188/325 (57%), Gaps = 17/325 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
AS+FY+ L++ K A+++LK RGL+ EI F LG+AP W N L + D
Sbjct: 122 AASEFYRQALRSHPTRKAAVDYLKGRGLSGEIARDFCLGFAPPGWDNLLKHLGADALQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DPDS
Sbjct: 291 TSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESALPNLQDGRRARFLFLPEGEDPDS 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F E++ + + ++++ L + IP ++
Sbjct: 351 LVRAEGTDAFMARINQHAQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK 322
LR + + L +I + ++ L +
Sbjct: 410 LRQLMRNRLKEITGLDPQQVEQLAQ 434
>gi|238750948|ref|ZP_04612445.1| DNA primase [Yersinia rohdei ATCC 43380]
gi|238710862|gb|EEQ03083.1| DNA primase [Yersinia rohdei ATCC 43380]
Length = 582
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 147/454 (32%), Positives = 238/454 (52%), Gaps = 37/454 (8%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ LK+ + +A +LK RGL+EEII F +G+AP W NAL + D + L
Sbjct: 124 SGFYQQSLKSQTANQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESRTALN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTNDTGRT-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDGV-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 232 NSPETEIFHKGRQLYGLYEAQVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGTATTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 EHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G F K++ EA L F E ++ +L + K L +P +LR
Sbjct: 352 KEGKDRFEKRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVP-GETLRLY 410
Query: 302 IISSLS-KIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMK----LLISYPS 356
+ L K+ + ++++ L SI + QP ++ M+ LL+ P
Sbjct: 411 LRQQLGNKLGLLDDSQLDKLMPKQAESI-------NSYQPPQLKRTTMRILIGLLVQNPQ 463
Query: 357 LINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNFESII 414
L I S + +K + + +F +L++T + + + + ++ + K ++ E++
Sbjct: 464 LATLIPSLQGVEQAKLAG--LPLFIELVETC-LAQPGLTTGQLLELYRDNKFSQQLETLA 520
Query: 415 VK----IQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
++D E + +L D+I + R+ +
Sbjct: 521 TWNHMIVEDMVEQTFVDTLTSLYDSILEQRQETL 554
>gi|398983257|ref|ZP_10689929.1| DNA primase, catalytic core [Pseudomonas sp. GM24]
gi|399011933|ref|ZP_10714262.1| DNA primase, catalytic core [Pseudomonas sp. GM16]
gi|398116943|gb|EJM06699.1| DNA primase, catalytic core [Pseudomonas sp. GM16]
gi|398157443|gb|EJM45832.1| DNA primase, catalytic core [Pseudomonas sp. GM24]
Length = 654
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LSAAADFYRQALKSHPSRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI++T G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLKNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRAEGTDAFKARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + LS+I +S ++ L +
Sbjct: 408 ANLRILMRQRLSEITGLSSETVSQLAQ 434
>gi|359396019|ref|ZP_09189071.1| DNA primase [Halomonas boliviensis LC1]
gi|357970284|gb|EHJ92731.1| DNA primase [Halomonas boliviensis LC1]
Length = 617
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 193/340 (56%), Gaps = 17/340 (5%)
Query: 4 ASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA 61
A+ FY+ +LK + A +L RGL++++I + +GYAP W AL K L I
Sbjct: 124 AASFYRERLKMQEGQPAQRYLLGRGLSDDVIKTYGIGYAPAGWEAL-KQHLSERGIGEPV 182
Query: 62 SS--GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
GL++ + + + YDRFR R+MFPI++ G+ I FGGR++ D ++ K
Sbjct: 183 QVEYGLLIHRE----------DTGRTYDRFRDRVMFPIRDLRGRTIAFGGRVMGD-DQPK 231
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGL+EA+ K +++ EGYMDV+ L+Q+G VA LGTA
Sbjct: 232 YLNSPETPVFHKGRELYGLYEARQVSNKLEQLVMVEGYMDVVALAQYGIHNAVATLGTAT 291
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T H+ ++ + ++F FDGD+AGR+AA RALE L D + +FLFLP+ DPD+
Sbjct: 292 TEDHLTRLFRLVSRVVFCFDGDRAGRQAASRALETALPQMIDGREARFLFLPEGDDPDTL 351
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
+R+ G + F +V AM L +F E+ +LKT++ E+ + +P L+
Sbjct: 352 VRREGTQAFQDRVTCAMPLSEFLFEQAAQGRDLKTVEGRERFASQVLEALNKVP-EGMLK 410
Query: 300 FKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ 339
++ SL++ ++ ++ L + + + + +++ Q
Sbjct: 411 SLLLESLAQRSGLAQEQLKVLLEKRAQATQRHSSQRQAEQ 450
>gi|424925270|ref|ZP_18348631.1| DNA primase, catalytic core [Pseudomonas fluorescens R124]
gi|404306430|gb|EJZ60392.1| DNA primase, catalytic core [Pseudomonas fluorescens R124]
Length = 654
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI++T G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRAEGTDAFKARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I +S ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLSSETVSQLAQ 434
>gi|334144445|ref|YP_004537601.1| DNA primase [Thioalkalimicrobium cyclicum ALM1]
gi|333965356|gb|AEG32122.1| DNA primase [Thioalkalimicrobium cyclicum ALM1]
Length = 600
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/274 (41%), Positives = 174/274 (63%), Gaps = 15/274 (5%)
Query: 5 SDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTL 60
+ FY+ QL+ +S EA +L++RGL E+ RF +G+AP W+ L + D L
Sbjct: 130 AKFYRQQLREHSSSDEAKAYLRQRGLTPEVAKRFIIGFAPPGWSTLVPGLSADVRLTQQL 189
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
GL+V+K +KV YDRFR RIMFPI+N GQ+I FGGR++ + ++ KY
Sbjct: 190 IELGLLVEKSEDKV-----------YDRFRHRIMFPIRNGKGQVIAFGGRVLSEEDKPKY 238
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPE+P+FHKS+ LYGL+E + + + SGY+++ EGYMDV+ L+QFG VA LGTA T
Sbjct: 239 LNSPESPIFHKSDTLYGLYEWRKSRDASGYLIVVEGYMDVVALAQFGVDNAVATLGTAIT 298
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+H + + ++++F FDGD+AG AA +ALE+ L + + +KFLFL + DPDS +
Sbjct: 299 ESHCQILFNQVDTLMFCFDGDRAGLNAAWKALELVLPFIGGQRSVKFLFLAEGEDPDSTV 358
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
R+ G + F V +A+ L F+++ ++ ++ T
Sbjct: 359 RQLGAQGFFDLVEDALPLSDFWMQSLLTKLSVST 392
>gi|429093627|ref|ZP_19156208.1| DNA primase [Cronobacter dublinensis 1210]
gi|426741455|emb|CCJ82321.1| DNA primase [Cronobacter dublinensis 1210]
Length = 581
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/436 (32%), Positives = 232/436 (53%), Gaps = 28/436 (6%)
Query: 7 FYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ +Q +N++ A +L KRGL+E +I RF +GYAP W NAL + + N +L +
Sbjct: 126 FYRQALQAQNAEPARQYLAKRGLSESVIERFAIGYAPPGWDNALKRFGNNSENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V +K + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DKGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+E + + +L+ EGYMDV+ LSQ+ VA LGTA T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEVQQSDPNPPRLLVVEGYMDVVALSQYDINYAVASLGTATTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +R+
Sbjct: 294 IQMLFRVTNNVICCYDGDRAGRSAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRQE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F ++ +A L F ++ +L T + L +P +LR +
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLLPQVDLSTPDGRAQLSTLALPLISQVP-GETLRIYLR 412
Query: 304 SSLS-KIIKVSFNEINNLF--KINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
L K+ + +++ L + + S + K+ I I LL+ P L
Sbjct: 413 QELGNKLGILDDSQLERLMTRQADNSQTRPAPTLKRTTMRILI-----GLLVQNPELAPL 467
Query: 361 INSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQDN 420
+ S + K +++F +L++T + + + + +++ + + + D+
Sbjct: 468 VPS--LAALDKTKLPGLELFSELVNTC-LSQPGLTTGQLLEHYRGTKEAATLEKLSTWDD 524
Query: 421 FEYSIEIAKKTLLDAI 436
+IA+KT DA+
Sbjct: 525 IA-DKDIAEKTFTDAL 539
>gi|372487886|ref|YP_005027451.1| DNA primase, catalytic core [Dechlorosoma suillum PS]
gi|359354439|gb|AEV25610.1| DNA primase, catalytic core [Dechlorosoma suillum PS]
Length = 584
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 192/320 (60%), Gaps = 14/320 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+ +Y QLK+S +A +LK+RGL EI L+F +GYAP L F +Y+ L
Sbjct: 115 MGKAAQYYFEQLKHSDKAKEYLKRRGLTGEIALKFRIGYAPEGKYGLKGAFPNYD-APEL 173
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV E +RYDRFR R+MFPI N ++I FGGR+I D E KY
Sbjct: 174 EKAGLVKQ-----------TEDGRRYDRFRDRVMFPIINQKNEVIAFGGRVI-DQGEPKY 221
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF K EL+GL +A+ A+ + V++ EGYMDV+ L+Q G VA LGTA T
Sbjct: 222 LNSPETPLFEKGRELFGLPQARQALREKNTVIVVEGYMDVVALAQHGVGNAVATLGTATT 281
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+TH++K+L + I++ FDGD AGR+AA R LE L D+K I F+FLP ++DPDSY+
Sbjct: 282 ATHVQKLLRQVDRIVYCFDGDAAGRKAAWRGLENSLESLADNKSIGFVFLPPEHDPDSYV 341
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+ G + F + + +AM L F L+E+ + +L T + K Y + L + + + LR
Sbjct: 342 RELGKEAFERMIDQAMPLSDFLLKELASHCDLTTSEGKSKLVYEAKPLIQRL-ATPLLRL 400
Query: 301 KIISSLSKIIKVSFNEINNL 320
+++ L++ S E+ L
Sbjct: 401 QLVKRLAEASSFSQQEVERL 420
>gi|414069708|ref|ZP_11405700.1| DNA primase [Pseudoalteromonas sp. Bsw20308]
gi|410807938|gb|EKS13912.1| DNA primase [Pseudoalteromonas sp. Bsw20308]
Length = 583
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/364 (37%), Positives = 207/364 (56%), Gaps = 19/364 (5%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M+ + FY+ QLK NS I+++K RGL+ EI+ +F +GYAP+EW+ L
Sbjct: 121 MLHTARFYQHQLKHHSNSTAVIDYVKGRGLSGEIVKKFMIGYAPSEWDGLCLQL----GR 176
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
N LV K+ ++ ++P +++D FR R+MFPI++ G++I FGGR+++
Sbjct: 177 NKEQKEQLVELKLASE--KTPG----RQFDFFRDRLMFPIRDKRGRVIAFGGRVMQADQG 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+EAK A +K +VLI EGYMDV+ L++ G VA LGT
Sbjct: 231 PKYLNSPETRIFHKGFELYGLYEAKQAHKKLDHVLIVEGYMDVVALAEQGIEYAVAALGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A TS H+ + T+ +I +DGD+AGR AA RALE L Y D K + F+FLPD DPD
Sbjct: 291 ATTSEHMHTLFRTTDKVICCYDGDRAGRDAAWRALENALPYLNDGKALNFVFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
S ++K G ++F +++ EA + ++ L +L K L + IP S
Sbjct: 351 SLVQKEGKELFEQRLSEADDFTKVLFNKLSLEIDLTLDSGKAKLLSAALPLIEKIP-SEF 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+ I+ L ++I + ++NN ++ T +H K I P+ Q + +LI +P L
Sbjct: 410 YQENILEQLGRLIGRTREQLNN--RLKTPKQQHSIERKFKITPM---RQAIGILIQHPQL 464
Query: 358 INEI 361
I
Sbjct: 465 AKSI 468
>gi|238762466|ref|ZP_04623437.1| DNA primase [Yersinia kristensenii ATCC 33638]
gi|238699451|gb|EEP92197.1| DNA primase [Yersinia kristensenii ATCC 33638]
Length = 582
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/456 (31%), Positives = 240/456 (52%), Gaps = 33/456 (7%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ LK + +A +LK+RGL+EEII F +G+AP W NAL + D +
Sbjct: 120 MESLSAFYQQSLKGQTANQAREYLKRRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +G++V + YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 180 TALNDAGMLVTNDTGRT-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDGV- 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETEIFHKGRQLYGLYEAQVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 ATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP---L 294
+ +RK G F +++ EA L F E ++ +L + K L +P L
Sbjct: 348 TLVRKEGKDAFEQRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGETL 407
Query: 295 SSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISY 354
LR ++ + L + +++ NT+S + +++ ++ ++ LL+
Sbjct: 408 RLYLRQQLGNKLGLLDDSQLDKLMPKLAENTNSYQPPQLKRTTMR------ILIGLLVQN 461
Query: 355 PSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNFES 412
P L I S + +K + + +F +L++T + + + + ++ + K ++ E+
Sbjct: 462 PQLATLIPSLQGVEQAKLAG--LPLFIELVETC-LAQPGLTTGQLLELYRDNKFSQQLET 518
Query: 413 IIVK----IQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
+ ++D E + +L D+I + R+ +
Sbjct: 519 LATWNHMIVEDMVEQTFVDTLTSLYDSILEQRQETL 554
>gi|410094093|ref|ZP_11290548.1| DNA primase [Pseudomonas viridiflava UASWS0038]
gi|409758506|gb|EKN43801.1| DNA primase [Pseudomonas viridiflava UASWS0038]
Length = 651
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 189/331 (57%), Gaps = 17/331 (5%)
Query: 1 MICASDFYKIQLKN---SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A++FY+ LKN K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 120 LTAAAEFYRQALKNHPTRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKVMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKYNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F E++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFEQLTKEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKINTS 326
++L+ + L++I +S ++ L + S
Sbjct: 408 ANLKTLMRQRLTEITGLSGEAVSQLVQSAPS 438
>gi|388467955|ref|ZP_10142165.1| DNA primase [Pseudomonas synxantha BG33R]
gi|388011535|gb|EIK72722.1| DNA primase [Pseudomonas synxantha BG33R]
Length = 656
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 185/325 (56%), Gaps = 17/325 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL 320
++LR + L +I +S ++ L
Sbjct: 408 ANLRTLMRQRLLEITGLSGEAVSQL 432
>gi|399000529|ref|ZP_10703255.1| DNA primase, catalytic core [Pseudomonas sp. GM18]
gi|398129756|gb|EJM19112.1| DNA primase, catalytic core [Pseudomonas sp. GM18]
Length = 655
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+V+ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLVENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I +S ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLSSEAVSQLVQ 434
>gi|385787030|ref|YP_005818139.1| DNA primase [Erwinia sp. Ejp617]
gi|310766302|gb|ADP11252.1| DNA primase [Erwinia sp. Ejp617]
Length = 581
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/390 (34%), Positives = 214/390 (54%), Gaps = 22/390 (5%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M DFY+ L + S A N+L +RGL++E+I F++G+AP W NAL + + ++
Sbjct: 120 MTGLRDFYQQSLAHGQSAGARNYLAQRGLSDEVIQHFSIGFAPAGWDNALKRFGSNPDDR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+L +G++V ++ + YDRFR R+MFPI + G++IGFGGR++ D
Sbjct: 180 QSLTDAGMLVTN-----------DQGRSYDRFRERVMFPIHDKRGRVIGFGGRVLGDGM- 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA G +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETDIFHKGRQLYGLYEALKNHPAPGKLLVVEGYMDVVALAQFGVDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 STTAEHIQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G + F ++ +AM L F + ++ +L T + L + +P +
Sbjct: 348 TLVRKEGKEAFEARMEQAMPLSTFLYDTLLPQVDLSTPDGRAQLATLALPLLRQVP-GET 406
Query: 298 LRFKIISSLSKIIKVSFN-EINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPS 356
LR + L + + + ++ LF S K + + ++ + ++ LLI P
Sbjct: 407 LRIYLRQVLGDKLGIPDHIQLEKLFPEKAESA--KPVAQPQLKRTTMRI-LIGLLIQNPQ 463
Query: 357 LINEINSEDMIIFSKCSQNYVKMFFQLIDT 386
L + D + S+ +F +L+ T
Sbjct: 464 LATIVPPLDGLEQSETPG--FPLFVELVST 491
>gi|28867766|ref|NP_790385.1| DNA primase [Pseudomonas syringae pv. tomato str. DC3000]
gi|213967689|ref|ZP_03395836.1| DNA primase [Pseudomonas syringae pv. tomato T1]
gi|301382749|ref|ZP_07231167.1| DNA primase [Pseudomonas syringae pv. tomato Max13]
gi|302130709|ref|ZP_07256699.1| DNA primase [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|28851001|gb|AAO54080.1| DNA primase [Pseudomonas syringae pv. tomato str. DC3000]
gi|213927465|gb|EEB61013.1| DNA primase [Pseudomonas syringae pv. tomato T1]
Length = 652
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 187/325 (57%), Gaps = 17/325 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNNIN 58
AS+FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 122 AASEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DPD+
Sbjct: 291 TSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEAALPNLQDGRRARFLFLPEGEDPDT 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F E++ + ++++ L +P ++
Sbjct: 351 LVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK 322
LR + LS+I ++ ++ L +
Sbjct: 410 LRILMRQRLSEITGLTGEAVSQLVQ 434
>gi|406966569|gb|EKD91946.1| hypothetical protein ACD_29C00281G0001 [uncultured bacterium]
Length = 582
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/291 (42%), Positives = 168/291 (57%), Gaps = 13/291 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN-TLAS 62
A +++ L S+ AI +LK RGL EI +F +GYAP+ W+ L + F L +
Sbjct: 119 AQTYFQQALPQSQTAITYLKSRGLTGEICKQFGVGYAPDSWDFLCQSFDQRAETQLNLVT 178
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+++ K YDRFR RIMFPI++ G+ IGFGGR++KD KY+N
Sbjct: 179 TGMLMKKTSGGY-----------YDRFRDRIMFPIRDLRGKTIGFGGRVLKDGI-PKYLN 226
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETP+FHK+ +YGLFEA A +L+ EGY+DVI LSQ G +VA LGTA
Sbjct: 227 SPETPIFHKNQTVYGLFEANQANAGLKKILVVEGYLDVIALSQHGIRYSVATLGTALNIK 286
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
HI+ IL YT+ IIF FDGD AGR+AA RAL + L D KFLFLP+ DPDS IRK
Sbjct: 287 HIQTILRYTSQIIFCFDGDAAGRKAALRALTISLPLLRDGLDFKFLFLPENEDPDSLIRK 346
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
GY+ F + +A +L F ++ ++ TI +L + +P
Sbjct: 347 IGYEKFELLIDQAENLADVFFSQLATQFSKDTIAGKAAFAKEAHHLLQTMP 397
>gi|26987130|ref|NP_742555.1| DNA primase [Pseudomonas putida KT2440]
gi|60392932|sp|P0A118.1|PRIM_PSEPK RecName: Full=DNA primase
gi|60392933|sp|P0A119.1|PRIM_PSEPU RecName: Full=DNA primase
gi|24981761|gb|AAN66019.1|AE016231_2 DNA primase [Pseudomonas putida KT2440]
gi|2281435|gb|AAC45508.1| DNA primase [Pseudomonas putida]
gi|2731761|gb|AAC38072.1| DNA primase [Pseudomonas putida]
Length = 660
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 192/333 (57%), Gaps = 19/333 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
AS+FY+ L++ K A+++LK RGL+ EI F LG+AP W N L + D
Sbjct: 122 AASEFYRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DPDS
Sbjct: 291 TSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDPDS 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ + L +F E++ + + ++++ L + IP ++
Sbjct: 351 LVRAEGTDAFMARINQHSQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK--INTSSI 328
LR + + L +I + ++ L + TSS+
Sbjct: 410 LRQLMRNRLKEITGLDPQQVEQLAQQAPATSSM 442
>gi|422659021|ref|ZP_16721451.1| DNA primase [Pseudomonas syringae pv. lachrymans str. M302278]
gi|331017644|gb|EGH97700.1| DNA primase [Pseudomonas syringae pv. lachrymans str. M302278]
Length = 652
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 187/325 (57%), Gaps = 17/325 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNNIN 58
AS+FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 122 AASEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DPD+
Sbjct: 291 TSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEAALPNLQDGRRARFLFLPEGEDPDT 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F E++ + ++++ L +P ++
Sbjct: 351 LVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK 322
LR + LS+I ++ ++ L +
Sbjct: 410 LRILMRQRLSEITGLTGEAVSQLVQ 434
>gi|398937160|ref|ZP_10667199.1| DNA primase, catalytic core [Pseudomonas sp. GM41(2012)]
gi|398167143|gb|EJM55223.1| DNA primase, catalytic core [Pseudomonas sp. GM41(2012)]
Length = 655
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPSRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEAALPSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I +S ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLSGEAVSQLVQ 434
>gi|302064028|ref|ZP_07255569.1| DNA primase [Pseudomonas syringae pv. tomato K40]
Length = 652
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 187/325 (57%), Gaps = 17/325 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNNIN 58
AS+FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 122 AASEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DPD+
Sbjct: 291 TSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEAALPNLQDGRRARFLFLPEGEDPDT 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F E++ + ++++ L +P ++
Sbjct: 351 LVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK 322
LR + LS+I ++ ++ L +
Sbjct: 410 LRILMRQRLSEITGLTGEAVSQLVQ 434
>gi|422591084|ref|ZP_16665733.1| DNA primase [Pseudomonas syringae pv. morsprunorum str. M302280]
gi|422650748|ref|ZP_16713549.1| DNA primase [Pseudomonas syringae pv. actinidiae str. M302091]
gi|330878418|gb|EGH12567.1| DNA primase [Pseudomonas syringae pv. morsprunorum str. M302280]
gi|330963832|gb|EGH64092.1| DNA primase [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 652
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 187/325 (57%), Gaps = 17/325 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNNIN 58
AS+FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 122 AASEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DPD+
Sbjct: 291 TSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEAALPNLQDGRRARFLFLPEGEDPDT 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F E++ + ++++ L +P ++
Sbjct: 351 LVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK 322
LR + LS+I ++ ++ L +
Sbjct: 410 LRILMRQRLSEITGLTGEAVSQLVQ 434
>gi|447918658|ref|YP_007399226.1| DNA primase [Pseudomonas poae RE*1-1-14]
gi|445202521|gb|AGE27730.1| DNA primase [Pseudomonas poae RE*1-1-14]
Length = 656
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 185/325 (56%), Gaps = 17/325 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+V+ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLVENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRAEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL 320
++LR + L +I +S ++ L
Sbjct: 408 ANLRTLMRQRLLEITGLSGEAVSQL 432
>gi|392422732|ref|YP_006459336.1| DNA primase [Pseudomonas stutzeri CCUG 29243]
gi|390984920|gb|AFM34913.1| DNA primase [Pseudomonas stutzeri CCUG 29243]
Length = 647
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 194/339 (57%), Gaps = 17/339 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+D+Y+ LK+ K A+ +LK RGL+ I F LG+AP W+ L K + D
Sbjct: 120 LAAAADYYRQALKSHATRKSAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHLGGDALQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
L +GL+++ N KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKALIDAGLLIENAENG----------KRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ A +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARQANRDLDEIMVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGD AGR+AA RALE L D + +FLFLPD DP
Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLE-AMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ + + L +F +++ + ++++ L + IP
Sbjct: 349 DTLVRAEGTDAFRARIQQHSQPLADYFFQQLSDEADPRSLEGKAHLATLAAPLIEKIP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIE 334
++LR + L++I ++ + ++ T++ + + E
Sbjct: 408 ANLRALMRQRLTEITGLNGEALQHMAAAPTTAPSNNSAE 446
>gi|388543057|ref|ZP_10146349.1| DNA primase [Pseudomonas sp. M47T1]
gi|388279143|gb|EIK98713.1| DNA primase [Pseudomonas sp. M47T1]
Length = 661
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 186/325 (57%), Gaps = 17/325 (5%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+D+Y+ LK + + A+ +LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 121 LTAAADYYRQALKTHPSRRAAVEYLKGRGLSGEIARDFGLGFAPPGWDNLFKHLSSDTLQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 181 QKAMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPETPVFHKGQELYGLFEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 290 TATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEAALPSLQDGRKARFLFLPEGEDP 349
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 350 DTLVRAEGTDAFKARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP-G 408
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL 320
++LR + + LS+I +S + L
Sbjct: 409 ANLRTLMRNRLSEITGLSGEAVKQL 433
>gi|293394294|ref|ZP_06638594.1| DNA primase [Serratia odorifera DSM 4582]
gi|291423272|gb|EFE96501.1| DNA primase [Serratia odorifera DSM 4582]
Length = 582
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 133/391 (34%), Positives = 217/391 (55%), Gaps = 32/391 (8%)
Query: 5 SDFYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ + N K+A ++L++RGL++++I F +G+AP W NAL + D ++ L
Sbjct: 124 SAFYQQSMHQPNGKQARDYLQQRGLSDDVIRHFAIGFAPAGWDNALKRFGRDPDSRAALN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V ++ + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------DQGRTYDRFRERVMFPIRDKRGRVIAFGGRVLGDGM-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 232 NSPETEVFHKGRQLYGLYEAQQSHPTLQRLLVVEGYMDVVALAQFGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T++++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ IR
Sbjct: 292 DHIQLLFRATDNVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLIR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G + F +++ +A L F E ++ +L + K L +P +LR
Sbjct: 352 KEGKQAFEQRMEQAQPLSTFLFESLMPQVDLSSPDGRAKLSTLALPLITQVP-GETLRLY 410
Query: 302 IISSL-SKIIKVSFNEINNLFKINTSSIKHKTIEKKN-IQPICIEYQIMK----LLISYP 355
+ L SK+ + N+++ L K E N QP ++ M+ LL+ P
Sbjct: 411 LRQQLGSKLGLLDDNQLDKLMP--------KQAENGNSYQPPQLKRTTMRILIGLLVQNP 462
Query: 356 SLINEINSEDMIIFSKCSQNYVKMFFQLIDT 386
L + + + + + Q + +F +L+ T
Sbjct: 463 HLATLVPALEGL--EQTRQPGLPLFVELVQT 491
>gi|290474859|ref|YP_003467739.1| DNA biosynthesis; DNA primase [Xenorhabdus bovienii SS-2004]
gi|289174172|emb|CBJ80959.1| DNA biosynthesis; DNA primase [Xenorhabdus bovienii SS-2004]
Length = 582
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 143/444 (32%), Positives = 236/444 (53%), Gaps = 43/444 (9%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L N + A +L +RGL+EEII RF +G+AP W N L + + L +
Sbjct: 126 FYQHSLTTPNGQSAQQYLLRRGLSEEIIHRFAIGFAPTGWDNVLKQFAHNAEERKQLNDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V + + YDRFR R+MFPI++ G++I FGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DNGRTYDRFRERVMFPIRDRRGRVIAFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT+ T+ H
Sbjct: 234 PETEIFHKGRQLYGLYEAQQNHNSLSRLLVVEGYMDVVALAQFGIDYAVASLGTSTTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++ + T++++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPDS IRK
Sbjct: 294 VQLLFRTTDNVVCCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPDSLIRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G ++F +++ +A++L F E ++ +L T + K L +P +LR ++
Sbjct: 354 GREVFEQRMEKALTLSTFLFESLLPQVDLSTPEGTTKISSLAMPLISQVP-GETLRLYLL 412
Query: 304 SSLSKIIKVSFNE-----INNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
L ++ + L K +TS T + ++P + ++ LL+ P L
Sbjct: 413 QELGNLLGTPDTTQLERFLAKLVKKDTS-----TYQALKLKPTTMRI-LIALLVQNPHLA 466
Query: 359 NEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFI------KYLKKINKNFES 412
+ S + + + + +F +L+DT + + + + + KY K++ K
Sbjct: 467 TLVPSLQGLFSVQIAG--LPLFIELVDTC-LAQPGLTTGQLLEQYRDNKYAKQLEKLAAW 523
Query: 413 IIVKIQDNFEYSIEIAKKTLLDAI 436
+++ EIA+KT DA+
Sbjct: 524 NDIQVD-------EIAEKTFSDAL 540
>gi|335041904|ref|ZP_08534931.1| DNA primase [Methylophaga aminisulfidivorans MP]
gi|333788518|gb|EGL54400.1| DNA primase [Methylophaga aminisulfidivorans MP]
Length = 573
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 206/389 (52%), Gaps = 22/389 (5%)
Query: 5 SDFYKIQLKNSKEA---INFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN-INTL 60
S FY QL+ + +++LK RGL++ I F +G AP+ W+ + K F + L
Sbjct: 120 SQFYVHQLQTHPDRQVFVDYLKSRGLSKNTIETFGIGMAPDGWDNVLKTFGSSQTLVKQL 179
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GL++ + YDRFR R+MFPI++ G++IGFGGR++ DS KY
Sbjct: 180 LDTGLLIKNDAGRT-----------YDRFRHRLMFPIRDRRGRVIGFGGRVLDDST-PKY 227
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETP+FHK ELYGL++A+ K +LI EGYMDVI L++ G VA LGTA T
Sbjct: 228 LNSPETPIFHKGTELYGLYQARKQNRKLERILIVEGYMDVIALAEHGITNAVATLGTATT 287
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++++L ++F FDGD+AGR AA RA E L ++ +KF+FLPD DPDS +
Sbjct: 288 PDHLRQLLRTAPEVVFCFDGDRAGREAAWRAAENALPMLGGNQQLKFMFLPDGEDPDSMV 347
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
RK G + F +VL A + FF + L ++ + + K +P + R
Sbjct: 348 RKHGAEAFESEVLHAQNYSDFFFAWLTEKVELGSMDGRARLVEIAKPYLKHVP-AGVYRD 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQI-MKLLISYPSLIN 359
+ L+++ + + +N I + K + KK ++ + +L+ YP L
Sbjct: 407 MLEQRLAELSQTNMATLNR--HIEKPAQKQQRPAKKQTMATMTPLRLAISILLQYPILAR 464
Query: 360 EINSEDMIIFSKCSQNYVKMFFQLIDTIH 388
EI+ D S V + +L++T+H
Sbjct: 465 EID--DTSSISSLDLPGVNILKELLETLH 491
>gi|422673120|ref|ZP_16732481.1| DNA primase [Pseudomonas syringae pv. aceris str. M302273]
gi|330970855|gb|EGH70921.1| DNA primase [Pseudomonas syringae pv. aceris str. M302273]
Length = 651
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 189/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ ++K + D
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNMSKHLSSDSLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKVMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F E++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I ++ ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLTGEAVSQLVQ 434
>gi|384125028|ref|YP_005507642.1| DNA primase, partial [Yersinia pestis D182038]
gi|262364692|gb|ACY61249.1| DNA primase [Yersinia pestis D182038]
Length = 413
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 194/357 (54%), Gaps = 24/357 (6%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ LK N+K+A +LK RGL+EEII F +G+AP W NAL + D +
Sbjct: 46 MESLSAFYQQSLKGQNAKQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESR 105
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +G++V + YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 106 TALNDAGMLVTNDTGRT-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDGV- 153
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 154 PKYLNSPETEIFHKGRQLYGLYEAQVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGT 213
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 214 ATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPD 273
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G F +++ A L F E ++ +L + K L +P +
Sbjct: 274 TLVRKEGKDAFEQRMEAAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVP-GEA 332
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMKLLIS 353
LR + L N++ L + K I+ N QP ++ M++LI
Sbjct: 333 LRLYLRQQLG-------NKLGLLDDSQLDKLMPKQIDNANTYQPPQLKRTTMRILIG 382
>gi|399911986|ref|ZP_10780300.1| DNA primase [Halomonas sp. KM-1]
Length = 607
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 120/382 (31%), Positives = 203/382 (53%), Gaps = 35/382 (9%)
Query: 4 ASDFYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA 61
++ F++ +LK S ++A +L +RGL+EE+ F +GYAP++W AL + L +
Sbjct: 124 SASFFRERLKMSEGQQAREYLSRRGLSEEVQRDFGIGYAPDDWEALKR-HLSARGVAEAV 182
Query: 62 SS--GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
GL+V + E + YDRFR R+MFPI+ G+ I FGGR++ D+ K
Sbjct: 183 QVEYGLLVQRE----------ESGRTYDRFRDRVMFPIRGVRGRTIAFGGRVLGDAK-PK 231
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGLFEA+ A + ++I EGYMDV+ L+QFG VA LGT+
Sbjct: 232 YLNSPETPVFHKGRELYGLFEARQANPRLERLVIVEGYMDVVALAQFGIRNAVATLGTST 291
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
+ H+ ++ + ++F FDGD+AGR+AA RALE L D + +FLFLP+ DPD+
Sbjct: 292 SEEHLGRLFRMVDEVVFCFDGDRAGRQAASRALETVLPQMIDGRTARFLFLPEGEDPDTL 351
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
+R+ G + F ++ A L +F ++ +L +++ E+ + +P L+
Sbjct: 352 VRREGPEAFENRITCASPLSEFLFDQAARGRDLARVEERERFASQVLKAVARLP-QGMLK 410
Query: 300 FKIISSLSKIIKVSFNEINNLFKINTSSIK------------------HKTIEKKNIQPI 341
++ L++ V + + L + + +K +
Sbjct: 411 TVLLGELARRTGVDQSRFDALLASEQEAASPAAEPSQAPVAAASAPSVAEEKPRKEGAAL 470
Query: 342 CIEYQIMKLLISYPSLINEINS 363
+ ++++LL+ P+L+ + +
Sbjct: 471 GLMARVLQLLVHEPTLVERLPA 492
>gi|238794324|ref|ZP_04637936.1| DNA primase [Yersinia intermedia ATCC 29909]
gi|238726318|gb|EEQ17860.1| DNA primase [Yersinia intermedia ATCC 29909]
Length = 582
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 149/458 (32%), Positives = 234/458 (51%), Gaps = 37/458 (8%)
Query: 1 MICASDFYKIQLKNSK--EAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ LK S +A +LK RGL+EEII F +G+AP W NAL + D +
Sbjct: 120 MESLSAFYQQSLKGSSANQAREYLKNRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +G++V + YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 180 TALNDAGMLVTNDTGRT-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDGV- 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETEIFHKGRQLYGLYEAQVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 ATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G F +++ A L F E ++ +L + K L +P +
Sbjct: 348 TLVRKEGKDAFEQRMEVAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVP-GET 406
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMK----LLI 352
LR + L N++ L + K E N QP ++ M+ LL+
Sbjct: 407 LRLYLRQQLG-------NKLGLLDDSQLDKLMPKQAENTNTYQPPQLKRTTMRILIGLLV 459
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNF 410
P L I S + +K + + +F +L+DT + + + + ++ + K ++
Sbjct: 460 QNPQLATLIPSLQGVEQAKLAG--LPLFIELVDTC-LAQPGLTTGQLLELYRDNKFSQQL 516
Query: 411 ESIIVK----IQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
E++ ++D E + +L D+I + R+ +
Sbjct: 517 ETLATWNHMIVEDMVEPTFVDTLASLYDSILEQRQETL 554
>gi|238789196|ref|ZP_04632984.1| DNA primase [Yersinia frederiksenii ATCC 33641]
gi|238722728|gb|EEQ14380.1| DNA primase [Yersinia frederiksenii ATCC 33641]
Length = 582
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 146/458 (31%), Positives = 238/458 (51%), Gaps = 37/458 (8%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ LK + +A +LK RGL+EEII F +G+AP W NAL + D +
Sbjct: 120 MESLSAFYQQSLKGQTANQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +G++V + YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 180 TALNDAGMLVTNDTGRT-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDGV- 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETEIFHKGRQLYGLYEAQVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 ATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G F +++ EA L F E ++ +L + K L +P +
Sbjct: 348 TLVRKEGKDAFERRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVP-GET 406
Query: 298 LRFKIISSLS-KIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMK----LLI 352
LR + L K+ + ++++ L +I + QP ++ M+ LL+
Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQAENI-------NSYQPPQLKRTTMRILIGLLV 459
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNF 410
P L I S + +K + + +F +L++T + + + + ++ + K ++
Sbjct: 460 QNPQLATLIPSLQGVEQAKLAG--LPLFIELVETC-LAQPGLTTGQLLELYRDNKFSQQL 516
Query: 411 ESIIVK----IQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
E++ ++D E + +L D+I + R+ +
Sbjct: 517 ETLATWNHMIVEDMVEQTFVDTLTSLYDSILEQRQETL 554
>gi|319941928|ref|ZP_08016249.1| DNA primase [Sutterella wadsworthensis 3_1_45B]
gi|319804581|gb|EFW01451.1| DNA primase [Sutterella wadsworthensis 3_1_45B]
Length = 866
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 202/343 (58%), Gaps = 23/343 (6%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI-NT 59
M A+DFY LK + AI++LK+R + E LRF LG++P+ W+ L +F +
Sbjct: 116 MKEAADFYSETLKATPRAIDYLKQREITGETALRFGLGFSPDGWHGLQAIFPGEKYLAKE 175
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L GLV++K N S RYD FRGRIMFPI++ G +IGFG R +K + K
Sbjct: 176 LLEVGLVLEK-----NGS-------RYDAFRGRIMFPIRSPKGLVIGFGARTMKGDEQPK 223
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP++HK +ELYGL+E ++A+ ++ EGYMDVI LSQ GF + VA LGT+
Sbjct: 224 YLNSPETPIYHKGSELYGLYEGRSAVIDRARAIVCEGYMDVIQLSQAGFREAVAALGTSI 283
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T HIKK+ T+++ FSFDGD AGR+AARRALE L D + +F+ LP ++DPDS
Sbjct: 284 TPEHIKKLFKLTDTVYFSFDGDSAGRKAARRALEAALPVIQDGQAARFVLLPPEHDPDSL 343
Query: 240 IRKFGYKIFSKKVLEAMSLLQF----FLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
I+ G + + +++ +A+ L +F +E L Y + +K ++K I K P+
Sbjct: 344 IKAEGAEGYEREIEKALPLTEFLKSLLVEGKSLTYAEERVKLTAEAKPLI-LSMKQAPV- 401
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI 338
LR ++ ++++ ++ ++ + NT + + + +I
Sbjct: 402 --LRLALMREIARLARLQLEDLEREW--NTGAPERTVLPPMDI 440
>gi|238782837|ref|ZP_04626866.1| DNA primase [Yersinia bercovieri ATCC 43970]
gi|238716260|gb|EEQ08243.1| DNA primase [Yersinia bercovieri ATCC 43970]
Length = 582
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 147/458 (32%), Positives = 236/458 (51%), Gaps = 37/458 (8%)
Query: 1 MICASDFYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ L +N+ +A +LK RGL+EEII F +G+AP W NAL + D +
Sbjct: 120 MESLSAFYQQSLNGQNANQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +G++V + YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 180 TALNDAGMLVTNDTGRT-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDG-V 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETEIFHKGRQLYGLYEAQVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 ATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G F +++ EA L F E ++ +L + K L +P +
Sbjct: 348 TLVRKEGKDAFEQRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVP-GET 406
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMK----LLI 352
LR + L N++ L + K + N QP ++ M+ LL+
Sbjct: 407 LRLYLRQQLG-------NKLGLLDDSQLDKLMPKQADNTNTYQPPQLKRTTMRILIGLLV 459
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNF 410
P L I S + +K + + +F +L++T + + + + ++ + K ++
Sbjct: 460 QNPQLATLIPSLQGVEQAKLAG--LPLFIELVETC-LAQPGLTTGQLLELYRDNKFSQQL 516
Query: 411 ESIIVK----IQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
E++ ++D E + +L D+I + R+ +
Sbjct: 517 ETLATWNHMIVEDMVEPTFVDTLASLYDSILEQRQETL 554
>gi|386010048|ref|YP_005928325.1| DnaG_2 [Pseudomonas putida BIRD-1]
gi|313496754|gb|ADR58120.1| DnaG_2 [Pseudomonas putida BIRD-1]
Length = 558
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 192/332 (57%), Gaps = 19/332 (5%)
Query: 4 ASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINT 59
AS+FY+ L++ K A+++LK RGL+ EI F LG+AP W N L + D
Sbjct: 123 ASEFYRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQQKV 182
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++ K
Sbjct: 183 MIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKPK 231
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 232 YLNSPETPVFHKGQELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTAT 291
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
+ H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DPDS
Sbjct: 292 SEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDPDSL 351
Query: 240 IRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSL 298
+R G F ++ + L +F E++ + + ++++ L + IP ++L
Sbjct: 352 VRAEGTDAFMARINQHSQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIP-GANL 410
Query: 299 RFKIISSLSKIIKVSFNEINNLFK--INTSSI 328
R + + L +I + ++ L + TSS+
Sbjct: 411 RQLMRNRLKEITGLDPQQVEQLAQQAPATSSM 442
>gi|317493717|ref|ZP_07952134.1| DNA primase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918044|gb|EFV39386.1| DNA primase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 582
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 113/273 (41%), Positives = 170/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
SDFY+ L+ +S+ A +L +RGL++EII F +GYAP W NAL + D + L
Sbjct: 124 SDFYQQALRQPSSQSAQQYLMQRGLSQEIIDHFAIGYAPAGWDNALKRFGRDPASRTALN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVNN-----------ENGRTYDRFRDRVMFPIRDRRGRVIAFGGRILGDGT-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +L+GL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ TS
Sbjct: 232 NSPETDIFHKGRQLFGLYEAQQRHPELARLLVVEGYMDVVALAQFGIDYAVASLGTSTTS 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T++++ +DGD AGR AA RALE L + +D + +KF+FLPD DPD+ +R
Sbjct: 292 EHIQLMFRTTDTVVCCYDGDNAGREAAWRALETALPFLSDGRQLKFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F +++ +A L F + ++ +L T
Sbjct: 352 KEGTAAFEQRIEQAQPLSAFLFDTLMPQVDLST 384
>gi|302185956|ref|ZP_07262629.1| DNA primase [Pseudomonas syringae pv. syringae 642]
Length = 651
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 188/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKVMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F E++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I +S ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLSGEAVSQLVQ 434
>gi|359454609|ref|ZP_09243885.1| DNA primase [Pseudoalteromonas sp. BSi20495]
gi|358048322|dbj|GAA80134.1| DNA primase [Pseudoalteromonas sp. BSi20495]
Length = 583
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 207/364 (56%), Gaps = 19/364 (5%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M+ + FY+ QLK NS I+++K RGL+ EI+ +F +GYAP+EW+ L
Sbjct: 121 MLHTARFYQHQLKHHSNSTAVIDYVKGRGLSGEIVKKFMIGYAPSEWDGLCLQL----GR 176
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
N LV K+ ++ ++P +++D FR R+MFPI++ G++I FGGR+++
Sbjct: 177 NKEQKEQLVELKLASE--KTPG----RQFDFFRDRLMFPIRDKRGRVIAFGGRVMQADQG 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+EAK A +K +VLI EGYMDV+ L++ G VA LGT
Sbjct: 231 PKYLNSPETRIFHKGFELYGLYEAKQAHKKLDHVLIVEGYMDVVALAEQGIEYAVAALGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A TS H+ + T+ +I +DGD+AGR AA RALE L Y D K + F+FLPD DPD
Sbjct: 291 ATTSEHMHTLFRTTDKVICCYDGDRAGRDAAWRALENALPYLNDGKALNFVFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
S ++K G ++F +++ EA + ++ L +L K L + IP S
Sbjct: 351 SLVQKEGKELFEQRLSEADDFTKVLFNKLSLEIDLTLDSGKAKLLSAALPLIEKIP-SEF 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+ I+ L ++I + ++N+ ++ T +H K I P+ Q + +LI +P L
Sbjct: 410 YQENILEQLGRLIGRTREQLNS--RLKTPKQQHSIERKFKITPM---RQAIGILIQHPQL 464
Query: 358 INEI 361
I
Sbjct: 465 AKSI 468
>gi|431928755|ref|YP_007241789.1| DNA primase, catalytic core [Pseudomonas stutzeri RCH2]
gi|431827042|gb|AGA88159.1| DNA primase, catalytic core [Pseudomonas stutzeri RCH2]
Length = 647
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 191/339 (56%), Gaps = 17/339 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+D+Y+ LK+ K A+ +LK RGL+ I F LG+AP W+ L K + D
Sbjct: 120 LAAAADYYRQALKSHPTRKSAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHLGGDALQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
L +GL+++ N KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKALIDAGLLIENAENG----------KRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARQTNRDLDEIMVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGD AGR+AA RALE L D + +FLFLPD DP
Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLE-AMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ + + L +F +++ + ++++ L + IP
Sbjct: 349 DTLVRAEGTDAFRARIQQHSQPLADYFFQQLSDEADPRSLEGKAHLATLAAPLIEKIP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIE 334
S+LR + L++I ++ + ++ S + T E
Sbjct: 408 SNLRTLMRQRLAEITGLNGEALQHMAAAPAPSPGNSTPE 446
>gi|419955717|ref|ZP_14471841.1| DNA primase [Pseudomonas stutzeri TS44]
gi|387967522|gb|EIK51823.1| DNA primase [Pseudomonas stutzeri TS44]
Length = 648
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 189/332 (56%), Gaps = 17/332 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
++ ASD+Y+ LK+ K A+ +LK RGL+ I F LG+AP W N L + D
Sbjct: 120 LVAASDYYRQALKSHPARKAAVEYLKGRGLSGVIARDFGLGFAPPGWDNLLKHLGGDALQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ N KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENAENG----------KRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ + +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARQSNRNLDEIMVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGD AGR+AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRLVPSVLFCFDGDSAGRKAAWRALEATLPNLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +R G F ++ +A L +F +++ + ++++ L + IP
Sbjct: 349 DSLVRAEGTDAFRARINQQAQPLADYFFQQLSEEADPRSLEGKAHLATLAAPLIEKIP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKINTSS 327
++LR + L+++ ++ + + S+
Sbjct: 408 ANLRTLMRQRLAELTGLTGEALQTMAAPAASA 439
>gi|289627701|ref|ZP_06460655.1| DNA primase [Pseudomonas syringae pv. aesculi str. NCPPB 3681]
gi|422583650|ref|ZP_16658771.1| DNA primase [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330868478|gb|EGH03187.1| DNA primase [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 651
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 188/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKN---SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKVMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLSD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F E++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I ++ ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLTGEAVSQLVQ 434
>gi|395495222|ref|ZP_10426801.1| DNA primase [Pseudomonas sp. PAMC 25886]
Length = 653
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 189/341 (55%), Gaps = 27/341 (7%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+V+ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLVENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALESTLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ E ++E ++ L+
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLT----------EESDPRSLEGKAHMVTLA 398
Query: 296 SSLRFKIISS-LSKIIKVSFNEINNLFKINTSSIKHKTIEK 335
+ L K+ + L +++ EI L S + H ++
Sbjct: 399 APLIDKVPGANLRTLMRQRLLEITGLSGEAVSQLVHSAPQE 439
>gi|420744313|ref|ZP_15221028.1| DNA primase, partial [Yersinia pestis PY-64]
gi|391628426|gb|EIS68501.1| DNA primase, partial [Yersinia pestis PY-64]
Length = 485
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 194/357 (54%), Gaps = 24/357 (6%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ LK N+K+A +LK RGL+EEII F +G+AP W NAL + D +
Sbjct: 120 MESLSAFYQQSLKGQNAKQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +G++V + YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 180 TALNDAGMLVTNDTGRT-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDG-V 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETEIFHKGRQLYGLYEAQVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 ATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G F +++ A L F E ++ +L + K L +P +
Sbjct: 348 TLVRKEGKDAFEQRMEAAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVP-GEA 406
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMKLLIS 353
LR + L N++ L + K I+ N QP ++ M++LI
Sbjct: 407 LRLYLRQQLG-------NKLGLLDDSQLDKLMPKQIDNANTYQPPQLKRTTMRILIG 456
>gi|451936476|ref|YP_007460330.1| DNA primase [Candidatus Kinetoplastibacterium oncopeltii TCC290E]
gi|451777399|gb|AGF48374.1| DNA primase [Candidatus Kinetoplastibacterium oncopeltii TCC290E]
Length = 600
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 193/341 (56%), Gaps = 13/341 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A Y L NS AI++L+KRG++ E I F+LG++ N+L+ +F DY N + L
Sbjct: 116 MAKAQSCYSRLLDNSFVAISYLEKRGISREFIKFFDLGWSDVGHNSLSNIFEDYYNNDCL 175
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
GLV+ K RYDRFR RIMFPIKN G +IGFG R I + + KY
Sbjct: 176 VDVGLVIKK-----------SDENRYDRFRERIMFPIKNQYGSVIGFGARTIANI-QPKY 223
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPET +F K ELYGL+E++ I+ G +++ EGYMDVI L+Q G VA LGT+ T
Sbjct: 224 LNSPETVIFSKGRELYGLWESRINIKSKGLIIVVEGYMDVISLTQHGINNVVATLGTSIT 283
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
IKK+L + I+FSFDGD AG+ AA +AL +C+ D I+FLFL D YDPD YI
Sbjct: 284 KDQIKKLLIVSEKIVFSFDGDIAGKNAAWKALLLCISEIKDGNEIRFLFLKDGYDPDLYI 343
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
++ G +F + ++ L + ++ I Y++ + I + K + LR
Sbjct: 344 KENGKDVFENCLKNSIPLSKLLIDTYINKYSINEAEGRAACWTEISKILKHMQNCPMLRI 403
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPI 341
+I S+I+ S N+ NNL N S +K+I KN Q I
Sbjct: 404 QIEKEASQILNFSKNDFNNLTD-NNYSYTNKSIYNKNSQNI 443
>gi|289649020|ref|ZP_06480363.1| DNA primase [Pseudomonas syringae pv. aesculi str. 2250]
Length = 651
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 188/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKVMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLSD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F E++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I ++ ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLTGEAVSQLVQ 434
>gi|66047867|ref|YP_237708.1| DNA primase [Pseudomonas syringae pv. syringae B728a]
gi|63258574|gb|AAY39670.1| DNA primase [Pseudomonas syringae pv. syringae B728a]
Length = 651
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 189/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKVMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F E++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I ++ +++L +
Sbjct: 408 ANLRILMRQRLTEITGLTGEAVSHLVQ 434
>gi|395235399|ref|ZP_10413611.1| DNA primase [Enterobacter sp. Ag1]
gi|394729933|gb|EJF29848.1| DNA primase [Enterobacter sp. Ag1]
Length = 581
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ LK ++ A +L KRGL++E+I F +GYAP W NAL + + N L +
Sbjct: 126 FYQQSLKQPAAEPARQYLGKRGLSDEVISHFAIGYAPPGWDNALKRFGGNSENRQALTDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQSQPEPARLLVVEGYMDVVALAQYGISYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T++++ +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTDNVVCCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKDAFEARMEQAQPLSTFLFNSLLPQVDLST 384
>gi|257483093|ref|ZP_05637134.1| DNA primase [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|422595505|ref|ZP_16669792.1| DNA primase [Pseudomonas syringae pv. lachrymans str. M301315]
gi|422607543|ref|ZP_16679541.1| DNA primase [Pseudomonas syringae pv. mori str. 301020]
gi|422682333|ref|ZP_16740599.1| DNA primase [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|330891183|gb|EGH23844.1| DNA primase [Pseudomonas syringae pv. mori str. 301020]
gi|330985809|gb|EGH83912.1| DNA primase [Pseudomonas syringae pv. lachrymans str. M301315]
gi|331011673|gb|EGH91729.1| DNA primase [Pseudomonas syringae pv. tabaci str. ATCC 11528]
Length = 651
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 188/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKVMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F E++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I ++ ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLTGEAVSQLVQ 434
>gi|395796284|ref|ZP_10475582.1| DNA primase [Pseudomonas sp. Ag1]
gi|421139626|ref|ZP_15599660.1| DNA primase [Pseudomonas fluorescens BBc6R8]
gi|395339586|gb|EJF71429.1| DNA primase [Pseudomonas sp. Ag1]
gi|404509198|gb|EKA23134.1| DNA primase [Pseudomonas fluorescens BBc6R8]
Length = 653
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 186/327 (56%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+DFY+ LK+ K A+++LK RGL EI F LG+AP W+ L K + D
Sbjct: 120 LTAAADFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+V+ E KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 180 QKAMIDAGLLVENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALESTLSSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEESDPRSLEGKAHMVTLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L +I +S ++ L +
Sbjct: 408 ANLRTLMRQRLLEITGLSGEAVSQLAR 434
>gi|440721003|ref|ZP_20901413.1| DNA primase [Pseudomonas syringae BRIP34876]
gi|440727204|ref|ZP_20907443.1| DNA primase [Pseudomonas syringae BRIP34881]
gi|440364398|gb|ELQ01530.1| DNA primase [Pseudomonas syringae BRIP34881]
gi|440364776|gb|ELQ01898.1| DNA primase [Pseudomonas syringae BRIP34876]
Length = 651
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 188/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKVMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F E++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I ++ ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLTGEAVSQLVQ 434
>gi|289676147|ref|ZP_06497037.1| DNA primase [Pseudomonas syringae pv. syringae FF5]
gi|424068238|ref|ZP_17805694.1| DNA primase [Pseudomonas syringae pv. avellanae str. ISPaVe013]
gi|443641936|ref|ZP_21125786.1| DNA primase [Pseudomonas syringae pv. syringae B64]
gi|407998579|gb|EKG38985.1| DNA primase [Pseudomonas syringae pv. avellanae str. ISPaVe013]
gi|443281953|gb|ELS40958.1| DNA primase [Pseudomonas syringae pv. syringae B64]
Length = 651
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 188/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKN---SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKVMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F E++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I ++ ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLTGEAVSQLVQ 434
>gi|422406476|ref|ZP_16483504.1| DNA primase [Pseudomonas syringae pv. glycinea str. race 4]
gi|330881701|gb|EGH15850.1| DNA primase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 577
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKN---SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W L K + D
Sbjct: 46 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWENLYKHLSSDSLQ 105
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 106 QKVMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 154
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 155 KPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 214
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 215 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 274
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F E++ + ++++ L +P
Sbjct: 275 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-G 333
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I ++ ++ L +
Sbjct: 334 ANLRILMRQRLTEITGLTGEAVSQLVQ 360
>gi|259907101|ref|YP_002647457.1| DNA primase [Erwinia pyrifoliae Ep1/96]
gi|387869819|ref|YP_005801189.1| DNA primase [Erwinia pyrifoliae DSM 12163]
gi|224962723|emb|CAX54178.1| DNA primase [Erwinia pyrifoliae Ep1/96]
gi|283476902|emb|CAY72759.1| DNA primase [Erwinia pyrifoliae DSM 12163]
Length = 581
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 132/390 (33%), Positives = 213/390 (54%), Gaps = 22/390 (5%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M DFY+ L +S A +L +RGL++E+I F++G+AP W NAL + + ++
Sbjct: 120 MTGLRDFYQQSLGQGSSSGARGYLAQRGLSDEVIKHFSIGFAPAGWDNALKRFGSNPDDR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+L +G++V ++ + YDRFR R+MFPI + G++IGFGGR++ D
Sbjct: 180 QSLTDAGMLVTN-----------DQGRSYDRFRERVMFPIHDKRGRVIGFGGRVLGDGM- 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA G +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETDIFHKGRQLYGLYEALKNHPAPGKLLVVEGYMDVVALAQFGVDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 STTAEHIQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G + F ++ +AM L F + ++ +L T + L + +P +
Sbjct: 348 TLVRKEGKEAFEARMEQAMPLSTFLYDTLLPQVDLSTPDGRAQLATLALPLLRQVP-GET 406
Query: 298 LRFKIISSLSKIIKVSFN-EINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPS 356
LR + L + + + ++ LF S K + + ++ + ++ LLI P
Sbjct: 407 LRIYLRQVLGDKLGIPDHIQLEKLFPEKAESA--KPVAQPQLKRTTMRI-LIGLLIQNPQ 463
Query: 357 LINEINSEDMIIFSKCSQNYVKMFFQLIDT 386
L + D + S+ +F +L+ T
Sbjct: 464 LATIVPPLDGLEQSETPG--FPLFIELVST 491
>gi|410087072|ref|ZP_11283777.1| DNA primase [Morganella morganii SC01]
gi|421492844|ref|ZP_15940203.1| DNAG [Morganella morganii subsp. morganii KT]
gi|455740445|ref|YP_007506711.1| DNA primase [Morganella morganii subsp. morganii KT]
gi|400192949|gb|EJO26086.1| DNAG [Morganella morganii subsp. morganii KT]
gi|409766301|gb|EKN50395.1| DNA primase [Morganella morganii SC01]
gi|455422008|gb|AGG32338.1| DNA primase [Morganella morganii subsp. morganii KT]
Length = 599
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 140/435 (32%), Positives = 236/435 (54%), Gaps = 27/435 (6%)
Query: 7 FYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ +Q N+ A +L +RGL++EII RF +GYAP W N L + ++ L +
Sbjct: 147 FYRHALQADNAGHAREYLNRRGLSQEIISRFAIGYAPAGWDNVLKRFARSEDDRQQLLDA 206
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V V + + YDRFR R+MFPI++ G++I FGGR++ D+ KY+NS
Sbjct: 207 GMLV-----------VNDNGRCYDRFRERVMFPIRDRRGRVIAFGGRVLDDA-LPKYLNS 254
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +L+GL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+ H
Sbjct: 255 PETDIFHKGRQLFGLYEAQQNNRELSRILVVEGYMDVVALAQFGIDYAVASLGTSTTAEH 314
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + +++II +DGD+AGR AA RALE L + D + ++F+FLPD DPDS +R+
Sbjct: 315 IQLLYRTSDTIICCYDGDRAGREAAWRALETALPHLNDGRQLRFMFLPDGDDPDSLVRRE 374
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F ++ EA SL QF + ++ ++ T + K L +P + F ++
Sbjct: 375 GREAFEQRQNEAHSLSQFLFDTLLRQVDMSTPEGRSKLNALAMPLISRVPGEAQQAF-LL 433
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEINS 363
L ++ + +I L + S + ++P + ++ LL+ P +
Sbjct: 434 QDLGNLLGLP--DITQLKQAVRQSENSPGYQAPKLKPTTMRI-LIALLVQNPQFAQLVPP 490
Query: 364 EDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNFESIIVKIQDNF 421
+ I S+ + +F +LIDT + + + + +++ + K+ E + ++
Sbjct: 491 LESIDTSRIAG--FSLFRELIDTC-LSQPGLTTGQLLEHYRDNKLAPQLEKLAG--WNDI 545
Query: 422 EYSIEIAKKTLLDAI 436
E EIA+KT DA+
Sbjct: 546 EID-EIAEKTFKDAL 559
>gi|422668613|ref|ZP_16728468.1| DNA primase [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|330980977|gb|EGH79080.1| DNA primase [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 651
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 188/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKN---SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKVMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F E++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I ++ ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLTGEAVSQLVQ 434
>gi|398791797|ref|ZP_10552498.1| DNA primase, catalytic core [Pantoea sp. YR343]
gi|398214525|gb|EJN01101.1| DNA primase, catalytic core [Pantoea sp. YR343]
Length = 581
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+N ++ A N+L RGL++E+I F +GYAP W NAL + ++ +L +
Sbjct: 126 FYQQSLRNPQAQSAQNYLATRGLSQEVIDHFAIGYAPAGWDNALKRFGQQKDDRESLMEA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V + + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVSN-----------DSGRTYDRFRDRVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+ H
Sbjct: 234 PETPIFHKGRQLYGLYEAQKNHPQPTRLLVVEGYMDVVALAQFGIDYAVASLGTSTTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++ + T+++I +DGD+AGR AA R LE L Y D + ++F+FLPD DPD+ +RK
Sbjct: 294 VQLLYRSTDTVICCYDGDRAGREAAWRTLETALPYMNDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +A L F + ++ +L T
Sbjct: 354 GKEAFEARMEQATPLSTFLFDSLMPQVDLST 384
>gi|409395490|ref|ZP_11246560.1| DNA primase [Pseudomonas sp. Chol1]
gi|409119872|gb|EKM96244.1| DNA primase [Pseudomonas sp. Chol1]
Length = 647
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 186/325 (57%), Gaps = 17/325 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ ASD+Y+ LK+ K A+ +LK RGL+ I F LG+AP W N L + D
Sbjct: 120 LAAASDYYRQALKSHPARKAAVEYLKGRGLSGVIARDFGLGFAPPGWDNLLKHLGGDALQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ N KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKAMIDAGLLIENAENG----------KRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ + +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARQSNRNLDEIMVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGD AGR+AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRLVPSVLFCFDGDPAGRKAAWRALEATLPSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +R G F ++ +A L +F +++ + ++++ L + IP
Sbjct: 349 DSLVRAEGTDAFRARINQQAQPLADYFFQQLSEEADPRSLEGKAHLATLAAPLIEKIP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL 320
++LR + L+++ ++ + +
Sbjct: 408 TNLRTLMRQRLAELTGLTGEALQTM 432
>gi|422296554|ref|ZP_16384221.1| DNA primase [Pseudomonas avellanae BPIC 631]
gi|407992238|gb|EKG33911.1| DNA primase [Pseudomonas avellanae BPIC 631]
Length = 651
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 186/325 (57%), Gaps = 17/325 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNNIN 58
AS+FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 122 AASEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ +++F FDGDQAGR AA RALE L D + FLFLP+ DPD+
Sbjct: 291 TSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEAALPNLQDGRRALFLFLPEGEDPDT 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F E++ + ++++ L +P ++
Sbjct: 351 LVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK 322
LR + LS+I ++ ++ L +
Sbjct: 410 LRILMRQRLSEITGLTGEAVSQLVQ 434
>gi|406946057|gb|EKD77368.1| hypothetical protein ACD_42C00357G0001 [uncultured bacterium]
Length = 573
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 204/372 (54%), Gaps = 36/372 (9%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINT- 59
M A Y+ QLK S AI++LK RGL + +F +G++PNEW L++ L N N
Sbjct: 116 MHQAQMLYEAQLKKSPVAIDYLKNRGLTGAVAKQFGIGFSPNEWEFLSQQ-LGKNKTNNQ 174
Query: 60 -LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
L ++GL+++K +P + Y YDRFR RIMFPI++ G+ I FGGR I D
Sbjct: 175 NLMTAGLIIEK-------NP--QHY--YDRFRNRIMFPIRDVRGKTIAFGGRTITDET-P 222
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK+ LYGL+E +K +++ EGY+DVI L+Q G A LGTA
Sbjct: 223 KYLNSPETPVFHKNQTLYGLYEMCQQHQKLSRIVMVEGYLDVIALAQHGIHYATATLGTA 282
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
HIK +L YT IIF FDGD AGR+AA +AL +CL D +FLFLP DPDS
Sbjct: 283 LNVQHIKILLRYTAKIIFCFDGDDAGRKAAWKALIICLPLLRDGLDFQFLFLPQNEDPDS 342
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK-SKYNIEYLFKIIP---- 293
++RK G F K+ A +L F E+ + + TI +K +YL +P
Sbjct: 343 WVRKIGKAAFEIKIDGAQALATVFFSELEKTHPVDTIAGKAAFAKQATDYL-NTMPEGIY 401
Query: 294 ---LSSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKL 350
L + L KI KI+ + N K++T ++ K + P +M++
Sbjct: 402 KNLLFTELSAKIQVGKEKIV---LPKKNMAAKLSTHTL------PKRLNP---AQTVMQI 449
Query: 351 LISYPSLINEIN 362
L+ +P+L +++
Sbjct: 450 LLHHPALASDLT 461
>gi|365834776|ref|ZP_09376215.1| DNA primase [Hafnia alvei ATCC 51873]
gi|364567857|gb|EHM45506.1| DNA primase [Hafnia alvei ATCC 51873]
Length = 582
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/273 (41%), Positives = 170/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
SDFY+ L+ +S+ A +L +RGL++EII F +GYAP W NAL + D + L
Sbjct: 124 SDFYQQALRQPSSQSAQQYLMQRGLSQEIIDHFAIGYAPAGWDNALKRFGRDPASRTALN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ + + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVNN-----------DNGRTYDRFRDRVMFPIRDRRGRVIAFGGRILGDGT-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +L+GL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ TS
Sbjct: 232 NSPETDIFHKGRQLFGLYEAQQRHPELARLLVVEGYMDVVALAQFGIDYAVASLGTSTTS 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T++++ +DGD AGR AA RALE L + +D + +KF+FLPD DPD+ +R
Sbjct: 292 EHIQLMFRTTDTVVCCYDGDNAGREAAWRALETALPFLSDGRQLKFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F +++ +A L F + ++ +L T
Sbjct: 352 KEGTAAFEQRIEQAQPLSAFLFDTLMPQVDLST 384
>gi|187730978|ref|YP_001881828.1| DNA primase [Shigella boydii CDC 3083-94]
gi|187427970|gb|ACD07244.1| DNA primase [Shigella boydii CDC 3083-94]
Length = 581
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGD-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|90416499|ref|ZP_01224430.1| DNA primase [gamma proteobacterium HTCC2207]
gi|90331698|gb|EAS46926.1| DNA primase [gamma proteobacterium HTCC2207]
Length = 665
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/354 (35%), Positives = 192/354 (54%), Gaps = 19/354 (5%)
Query: 7 FYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLAS 62
+++ QL+ + A+++LK RGL+ ++ ++ +GYAP W N L V D L
Sbjct: 124 YFRQQLRTHAGAASAVDYLKARGLSGQVAAQYGMGYAPPGWDNLLKAVGTDEQRTALLNE 183
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
SG++V K E+ K+YD FR RI FPI++ G+ +GFGGR++ DS + KY+N
Sbjct: 184 SGMLVIKP----------EEKKQYDFFRHRITFPIRDQRGRTVGFGGRVLDDS-KPKYLN 232
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETP+F K ELYGL+EA+ +++ +++ EGYMDVI L+QF VA LGTA T +
Sbjct: 233 SPETPVFSKGRELYGLYEARQKLKEIPCLIMVEGYMDVIALAQFEINNAVATLGTALTES 292
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H++KI YT+ I+F FDGD AGR+AA RAL+ L D KFLFLPD DPD+ +R+
Sbjct: 293 HLQKIFRYTSEIVFCFDGDSAGRKAAARALDTALPEMRDGVSAKFLFLPDGEDPDTMVRQ 352
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F++++ A L +F E++ + T + IP R +
Sbjct: 353 LGKQEFNEQIDRAQPLSEFLFEQLSDGIDSSTADGKARLSKVCAPQINRIP-QGVFRQLM 411
Query: 303 ISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPS 356
+ LS +S + + + ++ QP +Q L S P+
Sbjct: 412 LEELSSRTGISAENLRDYVATHKPPAGRGNASQQTHQPA---HQPAPRLASQPT 462
>gi|312968591|ref|ZP_07782800.1| DNA primase [Escherichia coli 2362-75]
gi|419041403|ref|ZP_13588422.1| DNA primase [Escherichia coli DEC2E]
gi|312286809|gb|EFR14720.1| DNA primase [Escherichia coli 2362-75]
gi|377887029|gb|EHU51507.1| DNA primase [Escherichia coli DEC2E]
Length = 581
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + N KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-NTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|114321664|ref|YP_743347.1| DNA primase [Alkalilimnicola ehrlichii MLHE-1]
gi|114228058|gb|ABI57857.1| DNA primase [Alkalilimnicola ehrlichii MLHE-1]
Length = 617
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/389 (32%), Positives = 197/389 (50%), Gaps = 48/389 (12%)
Query: 4 ASDFYKIQLKN---SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
A+ +Y+ L+ S +A+++LK+RGL+ +I RF LG+AP W+ L K D L
Sbjct: 120 AAIYYQEALRRHPASAKAVDYLKRRGLSGDIAARFALGFAPPGWDNLLKRHRDRQA--DL 177
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GL++++ +V YDRFR R+MFPI+N G ++GFGGR++ D E KY
Sbjct: 178 VEAGLLIERDGGRV-----------YDRFRDRVMFPIRNRRGTVVGFGGRVLGD-GEPKY 225
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETP+FHK ELYGL+EA A +L+ EGYMDV+ L+Q G VA LGTA T
Sbjct: 226 LNSPETPVFHKGRELYGLYEAVQAQRNPPLLLVVEGYMDVVALAQHGVQGAVATLGTAVT 285
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ ++ T+ ++F FDGD+AGR+AA RA+E L + + ++ L LP+ DPDS +
Sbjct: 286 PDQVSRLFRATDRVVFCFDGDRAGRQAAWRAVENSLPAMREGRSVEILLLPEGEDPDSLV 345
Query: 241 RKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
R G + F +++ E L ++ LEE+ L + D + K +PL L
Sbjct: 346 RAEGAEAFLRRLERETRPLAEYSLEELADGLRLDAVDD------RARLVQKAVPLVRRLP 399
Query: 300 FKI-----ISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ--------------- 339
I + L+++ I + + E+
Sbjct: 400 VGIYRDFYVEKLAELAHTGVGRIEQAVEQGGEGARPTAPERPPAARRPAGGGRGAAMVRR 459
Query: 340 -PICIEYQIMKLLISYPSLINEINSEDMI 367
P+ Q + LL+ P+L+ D +
Sbjct: 460 TPV---RQALTLLLQRPALVAHAGPLDQL 485
>gi|307546062|ref|YP_003898541.1| DNA primase [Halomonas elongata DSM 2581]
gi|307218086|emb|CBV43356.1| DNA primase [Halomonas elongata DSM 2581]
Length = 613
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 184/327 (56%), Gaps = 17/327 (5%)
Query: 4 ASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA 61
A+ F++ +LK + A +L KRGL+ E++ F +G+AP +W A+ + L I+
Sbjct: 124 AASFFRERLKMPEGEAARAYLDKRGLSPEVVRDFGIGFAPAQWEAMRR-HLGERGISEAV 182
Query: 62 S--SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
GL+V + + + YDRFR R+MFPI++ G+ + FGGR++ D+ K
Sbjct: 183 QIEYGLLVHRE----------DSGRTYDRFRDRVMFPIRDIRGRTVAFGGRVLGDAK-PK 231
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGL+EA+ A + V+I EGYMDV+ L+QFG VA LGTA
Sbjct: 232 YLNSPETPVFHKGRELYGLYEARQANARLDRVVIVEGYMDVVALAQFGIRNAVATLGTAT 291
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T H+ ++ + ++F FDGD+AGR+AA RAL L D + +FLFLP+ DPD+
Sbjct: 292 TEDHLSRLFRVVDEVVFCFDGDRAGRQAADRALRTALPMMIDGRQARFLFLPEGEDPDTL 351
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
+R+ G F +V A L +F E +L I++ E+ + ++P L+
Sbjct: 352 VRREGADAFEDRVTCASPLSEFLFELAAQGRDLARIEERERYASQVLEAIGLLP-EGMLK 410
Query: 300 FKIISSLSKIIKVSFNEINNLFKINTS 326
+++ LS+ V + +L + S
Sbjct: 411 SLLLTELSRRTGVDQSSFESLMARHAS 437
>gi|71736150|ref|YP_272919.1| DNA primase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|416014367|ref|ZP_11562194.1| DNA primase [Pseudomonas syringae pv. glycinea str. B076]
gi|71556703|gb|AAZ35914.1| DNA primase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|320325996|gb|EFW82054.1| DNA primase [Pseudomonas syringae pv. glycinea str. B076]
Length = 651
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W L K + D
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWENLYKHLSSDSLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKVMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F E++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I ++ ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLTGEAVSQLVQ 434
>gi|424074248|ref|ZP_17811658.1| DNA primase [Pseudomonas syringae pv. avellanae str. ISPaVe037]
gi|407994753|gb|EKG35312.1| DNA primase [Pseudomonas syringae pv. avellanae str. ISPaVe037]
Length = 651
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 188/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKVMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVIEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F E++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I ++ ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLTGEAVSQLVQ 434
>gi|350564681|ref|ZP_08933498.1| DNA primase [Thioalkalimicrobium aerophilum AL3]
gi|349777700|gb|EGZ32063.1| DNA primase [Thioalkalimicrobium aerophilum AL3]
Length = 615
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/276 (42%), Positives = 169/276 (61%), Gaps = 15/276 (5%)
Query: 3 CASDFYKIQLKN---SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNIN 58
A+ FY+ QL++ + +A +L++RGL E+ RF +G+AP W+AL K D
Sbjct: 128 AAAKFYRAQLRDHSDAAQAKTYLRQRGLTPEVAKRFIIGFAPPGWDALIKGLQADARLTA 187
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
L GL+V VN S K YDRFR RIMFPI+N GQ+I FGGR++ +
Sbjct: 188 QLVELGLLV------VNDS-----GKTYDRFRHRIMFPIRNGKGQVIAFGGRVLSAEEQP 236
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPE+P+FHKS+ LYGL+E + + ++S Y+++ EGYMDV+ L+Q G VA LGTA
Sbjct: 237 KYLNSPESPIFHKSDTLYGLYEWRQSRDQSDYLIVVEGYMDVVALAQHGVNNAVATLGTA 296
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
T +H + + + ++F FDGD+AG AA +ALE+ L + +KFLFL DPDS
Sbjct: 297 ITESHCQLLFRQVDELVFCFDGDRAGLNAAWKALELVLPLIGGQRSVKFLFLDQGEDPDS 356
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
+RK G + F V +AM L F+L+ ++ ++ T
Sbjct: 357 AVRKLGAEGFRALVNQAMPLSDFWLQHLLNKLSVST 392
>gi|440744097|ref|ZP_20923403.1| DNA primase [Pseudomonas syringae BRIP39023]
gi|440374553|gb|ELQ11281.1| DNA primase [Pseudomonas syringae BRIP39023]
Length = 651
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 187/325 (57%), Gaps = 17/325 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNNIN 58
A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 122 AAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DPD+
Sbjct: 291 TSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDPDT 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F E++ + ++++ L +P ++
Sbjct: 351 LVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK 322
LR + L++I ++ ++ L +
Sbjct: 410 LRILMRQRLTEITGLTGEAVSQLVQ 434
>gi|88858405|ref|ZP_01133047.1| DNA primase [Pseudoalteromonas tunicata D2]
gi|88820022|gb|EAR29835.1| DNA primase [Pseudoalteromonas tunicata D2]
Length = 583
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/366 (36%), Positives = 206/366 (56%), Gaps = 23/366 (6%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDY-NN 56
M+ AS+FY+ QLK NS + I++LK RGL+ + + ++ +GYAP EW+ L K +
Sbjct: 123 MLQASNFYQHQLKHHQNSADVISYLKGRGLSGQTVKKYMIGYAPTEWDGLCKQLARTKDQ 182
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
L L +K + ++D FR R+MFPI++ G++I FGGR+++ N
Sbjct: 183 KQQLTDLKLASEKTPGR-----------QFDFFRDRLMFPIRDKRGRVIAFGGRVLQGDN 231
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET +FHK ELYGL+EAK A +K +++ EGYMDV+ LS+ G VA LG
Sbjct: 232 GPKYLNSPETRIFHKGFELYGLYEAKQAFKKLTQIMVVEGYMDVVALSEQGIEYAVAALG 291
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA TS H++ + T+ +I +DGD+AG+ AA RALE L Y + K + F+FLPD DP
Sbjct: 292 TATTSEHMQTLFRATDKVICCYDGDRAGKDAAWRALENALPYLNNGKALLFVFLPDGEDP 351
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS 296
DS ++K G +F +++ +A + E + L ++ T D K+K L I + S
Sbjct: 352 DSLVQKEGKALFEQRLEQASDFTKVLFERLSLELDITT--DAGKAKLMSLALPMIEKVPS 409
Query: 297 SL-RFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYP 355
+ ++ L+++I + ++N KI + K + P+ I + LL+ +P
Sbjct: 410 DFYQENLLEKLARLIGRTREQLNQ--KIKNPRQQQSLKSKFKMTPMRI---AIGLLLQHP 464
Query: 356 SLINEI 361
L N I
Sbjct: 465 QLANSI 470
>gi|269137813|ref|YP_003294513.1| DNA primase [Edwardsiella tarda EIB202]
gi|387866555|ref|YP_005698024.1| DNA primase [Edwardsiella tarda FL6-60]
gi|267983473|gb|ACY83302.1| DNA primase [Edwardsiella tarda EIB202]
gi|304557868|gb|ADM40532.1| DNA primase [Edwardsiella tarda FL6-60]
Length = 582
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 131/392 (33%), Positives = 217/392 (55%), Gaps = 30/392 (7%)
Query: 2 ICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
+C +Y+ L+ + +A +L RG+++ I+ RF +GYAP W NAL + D
Sbjct: 123 LCG--YYQQSLRQPGATQAQQYLTGRGMSQAIMDRFAIGYAPQGWDNALKRFGRDAGGRT 180
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
L +G++V+ E + YDRFR RIM PI++ G++I FGGR++ +
Sbjct: 181 ALNDAGMLVNN-----------ENGRSYDRFRDRIMIPIRDKRGRVIAFGGRVLGNGT-P 228
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPET +FHK +L+GL+EA + +L+ EGYMDVI L+Q+G VA LGT+
Sbjct: 229 KYLNSPETEIFHKGRQLFGLYEALQHAAQPERLLVVEGYMDVIALAQYGVNYAVASLGTS 288
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
T+ HI+ + +T+S++ +DGD AGR AA RALE L Y +D + +KF+FLP+ DPD+
Sbjct: 289 TTAEHIQLLFRHTDSVVCCYDGDNAGREAAWRALETALPYLSDGRQLKFMFLPEGEDPDT 348
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSL 298
IR+ G + F +++ +A L F + ++ +L T K L +P +L
Sbjct: 349 LIRQEGAEAFERRMNDAHPLSAFLFDSLLPQVDLSTPDGRAKLSALALPLIGQVP-GETL 407
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISY---- 354
R + SL + K+ + + L K+ + ++ KN QP ++ M++LI+
Sbjct: 408 RLYLRQSLGQ--KLGILDDSQLEKL----LPRRSEAVKNYQPPRLKPTTMRILIALLVQN 461
Query: 355 PSLINEINSEDMIIFSKCSQNYVKMFFQLIDT 386
P+L E+ + D + + + +F +L++T
Sbjct: 462 PALAAEVPTLDGL--RQHPLPGLPLFIELVET 491
>gi|416021895|ref|ZP_11567186.1| DNA primase [Pseudomonas syringae pv. glycinea str. race 4]
gi|320332069|gb|EFW88005.1| DNA primase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 651
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W L K + D
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWENLYKHLSSDSLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKVMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F E++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I ++ ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLTGEAVSQLVQ 434
>gi|422642725|ref|ZP_16706141.1| DNA primase [Pseudomonas syringae Cit 7]
gi|330955105|gb|EGH55365.1| DNA primase [Pseudomonas syringae Cit 7]
Length = 651
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 187/325 (57%), Gaps = 17/325 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNNIN 58
A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 122 AAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DPD+
Sbjct: 291 TSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDPDT 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F E++ + ++++ L +P ++
Sbjct: 351 LVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK 322
LR + L++I ++ ++ L +
Sbjct: 410 LRILMRQRLTEITGLTGEAVSQLVQ 434
>gi|359434728|ref|ZP_09224979.1| DNA primase [Pseudoalteromonas sp. BSi20652]
gi|357918637|dbj|GAA61228.1| DNA primase [Pseudoalteromonas sp. BSi20652]
Length = 583
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 205/365 (56%), Gaps = 21/365 (5%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALN-KVFLDYNN 56
M+ + FY+ QLK NS I ++K RGL+ EI+ +F +GYAP+EW+ L ++ + +
Sbjct: 121 MLHTARFYQHQLKHHTNSAAVIEYVKGRGLSGEIVKKFMIGYAPSEWDGLCLQLGRNKDQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
L L +K + ++D FR R+MFPI++ G+++ FGGR+++
Sbjct: 181 KEQLVELKLASEKTPGR-----------QFDFFRDRLMFPIRDKRGRVVAFGGRVMQAEQ 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET +FHK ELYGL+EAK A +K +VLI EGYMDV+ L++ G VA LG
Sbjct: 230 GPKYLNSPETRIFHKGFELYGLYEAKQAHKKLDHVLIVEGYMDVVALAEQGIEYAVAALG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA TS H+ + T+++I +DGD+AGR AA RALE L + D K + F+FLPD DP
Sbjct: 290 TATTSEHMHTLFRTTDNVICCYDGDRAGRDAAWRALENALPFLNDGKALNFVFLPDGEDP 349
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS 296
DS ++K G +F +++ EA + ++ L +L K L + IP S
Sbjct: 350 DSLVQKEGKDLFEQRLSEADDFTKVLFNKLSLEIDLTLDSGKAKLLSAALPLIEKIP-SE 408
Query: 297 SLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPS 356
+ I+ L ++I + ++NN ++ T +H K I P+ Q + +LI +P+
Sbjct: 409 FYQENILEQLGRLIGRTREQLNN--RLKTPKQQHSIERKFKITPM---RQAIGILIQHPN 463
Query: 357 LINEI 361
L +
Sbjct: 464 LAKSV 468
>gi|417691380|ref|ZP_12340596.1| DNA primase [Shigella boydii 5216-82]
gi|332086725|gb|EGI91865.1| DNA primase [Shigella boydii 5216-82]
Length = 581
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ LK + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLKQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|386019288|ref|YP_005937312.1| DNA primase [Pseudomonas stutzeri DSM 4166]
gi|327479260|gb|AEA82570.1| DNA primase [Pseudomonas stutzeri DSM 4166]
Length = 650
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 190/332 (57%), Gaps = 17/332 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+D+Y+ LK+ K A+ +LK RGL+ I F LG+AP W+ L K + D
Sbjct: 120 LAAAADYYRQALKSHPTRKAAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHLGGDALQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
L +GL+++ N KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKALIDAGLLIENAENG----------KRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ A +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARQANRDLDEIMVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGD AGR+AA RALE L D + +FLFLPD DP
Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLE-AMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ + + L +F +++ + ++++ L + IP
Sbjct: 349 DTLVRAEGTDAFRARIQQHSQPLADYFFQQLSEEADPRSLEGKAHLATLAAPLIEKIP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKINTSS 327
++LR + L++I ++ + ++ S+
Sbjct: 408 NNLRALMRQRLTEITGLNGEALQHMAAAPVSA 439
>gi|194431628|ref|ZP_03063919.1| DNA primase [Shigella dysenteriae 1012]
gi|416285829|ref|ZP_11647978.1| DNA primase [Shigella boydii ATCC 9905]
gi|417673992|ref|ZP_12323433.1| DNA primase [Shigella dysenteriae 155-74]
gi|194419984|gb|EDX36062.1| DNA primase [Shigella dysenteriae 1012]
gi|320179313|gb|EFW54271.1| DNA primase [Shigella boydii ATCC 9905]
gi|332086770|gb|EGI91907.1| DNA primase [Shigella dysenteriae 155-74]
Length = 581
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ LK + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLKQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|339492685|ref|YP_004712978.1| DNA primase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|338800057|gb|AEJ03889.1| DNA primase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 650
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 190/332 (57%), Gaps = 17/332 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+D+Y+ LK+ K A+ +LK RGL+ I F LG+AP W+ L K + D
Sbjct: 120 LAAAADYYRQALKSHPTRKAAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHLGGDALQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
L +GL+++ N KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKALIDAGLLIENAENG----------KRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ A +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARQANRDLDEIMVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGD AGR+AA RALE L D + +FLFLPD DP
Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLE-AMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ + + L +F +++ + ++++ L + IP
Sbjct: 349 DTLVRAEGTDAFRARIQQHSQPLADYFFQQLSEEADPRSLEGKAHLATLAAPLIEKIP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKINTSS 327
++LR + L++I ++ + ++ S+
Sbjct: 408 NNLRALMRQRLAEITGLNGEALQHMAAAPVSA 439
>gi|170766158|ref|ZP_02900969.1| DNA primase [Escherichia albertii TW07627]
gi|170125304|gb|EDS94235.1| DNA primase [Escherichia albertii TW07627]
Length = 581
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 172/271 (63%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL++E+I RF +G+AP W N L + + N +L ++
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSDEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLINA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|452748448|ref|ZP_21948227.1| DNA primase [Pseudomonas stutzeri NF13]
gi|452007622|gb|EMD99875.1| DNA primase [Pseudomonas stutzeri NF13]
Length = 647
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 190/339 (56%), Gaps = 17/339 (5%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+D+Y+ LK K A+ +LK RGL+ I F LG+AP W+ L K + D
Sbjct: 120 LAAAADYYRQALKAHPTRKSAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHLGGDPLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 HKAMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ A +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARQANRDLDEIMVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGD AGR+AA RALE L D + +FLFLPD DP
Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLE-AMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ + + L +F +++ + ++++ L + IP
Sbjct: 349 DTLVRAEGTDAFRARIQQHSQPLADYFFQQLSDEADPRSLEGKAHLATLAAPLIEKIP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIE 334
++LR + L++I ++ + ++ T + E
Sbjct: 408 ANLRALMRQRLAEITGLNGEALQHMAAAPTPNPDSSPPE 446
>gi|372268986|ref|ZP_09505034.1| DNA primase [Alteromonas sp. S89]
Length = 707
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/343 (36%), Positives = 194/343 (56%), Gaps = 16/343 (4%)
Query: 4 ASDFYKIQLKNSK---EAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINT 59
A++FY+ +L++ K AI +LK RGL+ I F +G AP W N LN++
Sbjct: 123 AAEFYREKLRDHKVSTPAITYLKNRGLSGAICKEFGIGLAPPGWDNLLNQLGTSAEKAAQ 182
Query: 60 LASSGLVV-----DKIINKVNQSPVIEKYKR--YDRFRGRIMFPIKNTDGQIIGFGGRLI 112
L +GL + D + N + +E KR YDRFR RIMFPI++ G+ I FGGR++
Sbjct: 183 LELAGLAIRRQDSDGLSNH-KEGGKVEPAKRHHYDRFRNRIMFPIRDQRGRTIAFGGRVL 241
Query: 113 KDSNEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTV 172
D ++ KY+NSPETP+FHK ELYGL+EA+ A + +++ EGYMDV+ L+QF V
Sbjct: 242 GD-DKPKYLNSPETPIFHKGRELYGLWEARQANRELKRLIVVEGYMDVVALAQFDIRCAV 300
Query: 173 AILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPD 232
A LGTAC HI+ +T ++F FDGDQAGR AARRALE L + D + ++FL LP+
Sbjct: 301 ATLGTACGEDHIQLAFRHTQEVVFCFDGDQAGRTAARRALEAGLPHMQDGRSLRFLLLPE 360
Query: 233 KYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIIL-NYNLKTIKDIEKSKYNIEYLFKI 291
DPD+ +R+ G + F + + E L+ FL +++ N++T+ + L
Sbjct: 361 GEDPDTLVRQIGGERFDQLIDEQGRPLEDFLFDLLGEGINIQTMDGRARLSKAAAPLLDR 420
Query: 292 IPLS--SSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKT 332
+P L F+ ++ + + + EI K ++ + ++
Sbjct: 421 LPAGVYRQLMFQQLARRTGLEQDMLEEIIAAEKARSAELARQS 463
>gi|429334654|ref|ZP_19215308.1| DNA primase [Pseudomonas putida CSV86]
gi|428760725|gb|EKX82985.1| DNA primase [Pseudomonas putida CSV86]
Length = 664
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 188/328 (57%), Gaps = 19/328 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ A++FY+ LK+ K A+ +LK RGL+ EI F LG+AP W+ L K L +++
Sbjct: 120 LTAAAEFYRQALKSHPTRKAAVEYLKGRGLSGEIARDFGLGFAPPGWDNLFK-HLGSDSL 178
Query: 58 NTLA--SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDS 115
A +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D
Sbjct: 179 QQKAMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD- 227
Query: 116 NEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAIL 175
++ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA L
Sbjct: 228 DKPKYLNSPETPVFHKGQELYGLYEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATL 287
Query: 176 GTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYD 235
GTA + H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ D
Sbjct: 288 GTATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRKARFLFLPEGED 347
Query: 236 PDSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL 294
PDS +R G F ++ A L +F +++ + ++++ L +P
Sbjct: 348 PDSLVRAEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVP- 406
Query: 295 SSSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + + L +I + ++ L +
Sbjct: 407 GANLRALMRNRLKEITGLDNQQVEQLAR 434
>gi|254491217|ref|ZP_05104398.1| DNA primase [Methylophaga thiooxidans DMS010]
gi|224463730|gb|EEF79998.1| DNA primase [Methylophaga thiooxydans DMS010]
Length = 572
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 214/383 (55%), Gaps = 18/383 (4%)
Query: 8 YKIQLKNSKEA-INFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLASSGL 65
+++Q ++A +++LK+RGL+++ + F +G AP+ W+ + + F + L GL
Sbjct: 125 HQLQTHPQRQAFVDYLKRRGLSQKTVELFGIGMAPDGWDNVLRTFGSNPQQTKQLLDGGL 184
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPE 125
++ +K + YDRFR RIMFPI + G++IGFGGR++ DS KY+NSPE
Sbjct: 185 LIKN-----------DKGRTYDRFRNRIMFPIWDRRGRVIGFGGRVLDDST-PKYLNSPE 232
Query: 126 TPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIK 185
TP+FHK ELYGL++A+ A K ++I EGYMDVI L++ G VA LGT+ T+ H++
Sbjct: 233 TPIFHKGAELYGLYQARKANRKLERIVIVEGYMDVIALAEHGISNAVATLGTSTTADHLR 292
Query: 186 KILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGY 245
+L ++F FDGD+AGR AA RA E L ++ +KF+FLPD DPDS + + G
Sbjct: 293 LLLRAAPEVVFCFDGDRAGRDAAWRAAENALPMLGGNQQLKFMFLPDGEDPDSLVSEQGA 352
Query: 246 KIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIISS 305
+ F+++V+ A + +FF E + +L ++ + + K +P + R +
Sbjct: 353 EAFNERVVNAQNYSEFFFETLGSQVDLASMDGRARLVEMAKPYLKHVP-AGVYRDMLEQR 411
Query: 306 LSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEINSED 365
L+++ K + +N + K + +K+ + + + +++ YP L EI+ D
Sbjct: 412 LAELSKTNIATLNKHLEKPAQQQK-RPAKKQAMATMTPIRMAITIVLQYPILAREID--D 468
Query: 366 MIIFSKCSQNYVKMFFQLIDTIH 388
+ Q V + +L++T+H
Sbjct: 469 VAAIQSVKQPGVNILQELLETLH 491
>gi|422647533|ref|ZP_16710661.1| DNA primase [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330961075|gb|EGH61335.1| DNA primase [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 651
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 187/325 (57%), Gaps = 17/325 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNNIN 58
A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 122 AAAEFYRQALKSHPARKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDALQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ +++F FDGDQAGR AA RAL+ L D + +FLFLP+ DPD+
Sbjct: 291 TSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALDATLSNLQDGRRARFLFLPEGEDPDT 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F E++ + ++++ L +P ++
Sbjct: 351 LVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK 322
LR + LS+I ++ ++ L +
Sbjct: 410 LRTLMRQRLSEITGLTGEAVSQLVQ 434
>gi|329298674|ref|ZP_08256010.1| DNA primase [Plautia stali symbiont]
Length = 581
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 167/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+N +K A +L RGL++++I F +GYAP W N L + + +L
Sbjct: 126 FYQQSLRNPQAKSAQQYLATRGLSQQVIDHFAIGYAPAGWDNVLKRFGQQKEDRESLMEV 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V + + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVSN-----------DSGRTYDRFRDRVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+ H
Sbjct: 234 PETPIFHKGRQLYGLYEAQKNHPQPARLLVVEGYMDVVALAQFGIDYAVASLGTSTTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRSTDNVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +AM L F + ++ +L T
Sbjct: 354 GKAAFEARMEQAMPLSTFLFDSLMPQVDLST 384
>gi|417123287|ref|ZP_11972197.1| DNA primase [Escherichia coli 97.0246]
gi|386146678|gb|EIG93123.1| DNA primase [Escherichia coli 97.0246]
Length = 581
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINNAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|417086778|ref|ZP_11953875.1| DNA primase [Escherichia coli cloneA_i1]
gi|355350244|gb|EHF99444.1| DNA primase [Escherichia coli cloneA_i1]
Length = 581
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLVDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|331659357|ref|ZP_08360299.1| DNA primase [Escherichia coli TA206]
gi|331053939|gb|EGI25968.1| DNA primase [Escherichia coli TA206]
Length = 581
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLVDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|26249648|ref|NP_755688.1| DNA primase [Escherichia coli CFT073]
gi|91212495|ref|YP_542481.1| DNA primase [Escherichia coli UTI89]
gi|117625378|ref|YP_855495.1| DNA primase [Escherichia coli APEC O1]
gi|218560153|ref|YP_002393066.1| DNA primase [Escherichia coli S88]
gi|227887790|ref|ZP_04005595.1| DNA primase [Escherichia coli 83972]
gi|237706171|ref|ZP_04536652.1| DNA primase [Escherichia sp. 3_2_53FAA]
gi|300973233|ref|ZP_07172072.1| DNA primase [Escherichia coli MS 45-1]
gi|301048096|ref|ZP_07195134.1| DNA primase [Escherichia coli MS 185-1]
gi|386601106|ref|YP_006102612.1| DNA primase [Escherichia coli IHE3034]
gi|386602835|ref|YP_006109135.1| DNA primase [Escherichia coli UM146]
gi|386630952|ref|YP_006150672.1| DNA primase [Escherichia coli str. 'clone D i2']
gi|386635872|ref|YP_006155591.1| DNA primase [Escherichia coli str. 'clone D i14']
gi|386640681|ref|YP_006107479.1| DNA primase [Escherichia coli ABU 83972]
gi|419913408|ref|ZP_14431841.1| DNA primase [Escherichia coli KD1]
gi|419946098|ref|ZP_14462515.1| DNA primase [Escherichia coli HM605]
gi|422357345|ref|ZP_16438012.1| DNA primase [Escherichia coli MS 110-3]
gi|422362239|ref|ZP_16442810.1| DNA primase [Escherichia coli MS 153-1]
gi|422749817|ref|ZP_16803728.1| DNA primase [Escherichia coli H252]
gi|422753978|ref|ZP_16807804.1| DNA primase [Escherichia coli H263]
gi|422841097|ref|ZP_16889067.1| DNA primase [Escherichia coli H397]
gi|432359537|ref|ZP_19602751.1| DNA primase [Escherichia coli KTE4]
gi|432364334|ref|ZP_19607491.1| DNA primase [Escherichia coli KTE5]
gi|432413309|ref|ZP_19655964.1| DNA primase [Escherichia coli KTE39]
gi|432437896|ref|ZP_19680280.1| DNA primase [Escherichia coli KTE188]
gi|432458209|ref|ZP_19700386.1| DNA primase [Escherichia coli KTE201]
gi|432497202|ref|ZP_19738995.1| DNA primase [Escherichia coli KTE214]
gi|432505959|ref|ZP_19747679.1| DNA primase [Escherichia coli KTE220]
gi|432525414|ref|ZP_19762533.1| DNA primase [Escherichia coli KTE230]
gi|432570311|ref|ZP_19806818.1| DNA primase [Escherichia coli KTE53]
gi|432575284|ref|ZP_19811758.1| DNA primase [Escherichia coli KTE55]
gi|432589468|ref|ZP_19825821.1| DNA primase [Escherichia coli KTE58]
gi|432594282|ref|ZP_19830595.1| DNA primase [Escherichia coli KTE60]
gi|432599336|ref|ZP_19835607.1| DNA primase [Escherichia coli KTE62]
gi|432609122|ref|ZP_19845304.1| DNA primase [Escherichia coli KTE67]
gi|432652680|ref|ZP_19888426.1| DNA primase [Escherichia coli KTE87]
gi|432756018|ref|ZP_19990563.1| DNA primase [Escherichia coli KTE22]
gi|432780098|ref|ZP_20014319.1| DNA primase [Escherichia coli KTE59]
gi|432785054|ref|ZP_20019232.1| DNA primase [Escherichia coli KTE63]
gi|432822526|ref|ZP_20056215.1| DNA primase [Escherichia coli KTE118]
gi|432823981|ref|ZP_20057651.1| DNA primase [Escherichia coli KTE123]
gi|432975289|ref|ZP_20164124.1| DNA primase [Escherichia coli KTE209]
gi|432996849|ref|ZP_20185432.1| DNA primase [Escherichia coli KTE218]
gi|433001445|ref|ZP_20189964.1| DNA primase [Escherichia coli KTE223]
gi|433006669|ref|ZP_20195093.1| DNA primase [Escherichia coli KTE227]
gi|433009285|ref|ZP_20197698.1| DNA primase [Escherichia coli KTE229]
gi|433059544|ref|ZP_20246583.1| DNA primase [Escherichia coli KTE124]
gi|433088738|ref|ZP_20275104.1| DNA primase [Escherichia coli KTE137]
gi|433116964|ref|ZP_20302750.1| DNA primase [Escherichia coli KTE153]
gi|433126625|ref|ZP_20312175.1| DNA primase [Escherichia coli KTE160]
gi|433140692|ref|ZP_20325940.1| DNA primase [Escherichia coli KTE167]
gi|433150720|ref|ZP_20335722.1| DNA primase [Escherichia coli KTE174]
gi|433155234|ref|ZP_20340167.1| DNA primase [Escherichia coli KTE176]
gi|433165076|ref|ZP_20349807.1| DNA primase [Escherichia coli KTE179]
gi|433170052|ref|ZP_20354675.1| DNA primase [Escherichia coli KTE180]
gi|433214035|ref|ZP_20397621.1| DNA primase [Escherichia coli KTE99]
gi|442605277|ref|ZP_21020109.1| DNA primase [Escherichia coli Nissle 1917]
gi|78099121|sp|Q8FDG5.1|PRIM_ECOL6 RecName: Full=DNA primase
gi|26110076|gb|AAN82262.1|AE016767_22 DNA primase [Escherichia coli CFT073]
gi|91074069|gb|ABE08950.1| DNA primase [Escherichia coli UTI89]
gi|115514502|gb|ABJ02577.1| DNA primase [Escherichia coli APEC O1]
gi|218366922|emb|CAR04693.1| DNA primase [Escherichia coli S88]
gi|226899211|gb|EEH85470.1| DNA primase [Escherichia sp. 3_2_53FAA]
gi|227835186|gb|EEJ45652.1| DNA primase [Escherichia coli 83972]
gi|294489668|gb|ADE88424.1| DNA primase [Escherichia coli IHE3034]
gi|300300016|gb|EFJ56401.1| DNA primase [Escherichia coli MS 185-1]
gi|300410813|gb|EFJ94351.1| DNA primase [Escherichia coli MS 45-1]
gi|307555173|gb|ADN47948.1| DNA primase [Escherichia coli ABU 83972]
gi|307625319|gb|ADN69623.1| DNA primase [Escherichia coli UM146]
gi|315288820|gb|EFU48218.1| DNA primase [Escherichia coli MS 110-3]
gi|315295034|gb|EFU54371.1| DNA primase [Escherichia coli MS 153-1]
gi|323951400|gb|EGB47275.1| DNA primase [Escherichia coli H252]
gi|323957773|gb|EGB53487.1| DNA primase [Escherichia coli H263]
gi|355421851|gb|AER86048.1| DNA primase [Escherichia coli str. 'clone D i2']
gi|355426771|gb|AER90967.1| DNA primase [Escherichia coli str. 'clone D i14']
gi|371605199|gb|EHN93818.1| DNA primase [Escherichia coli H397]
gi|388389478|gb|EIL51007.1| DNA primase [Escherichia coli KD1]
gi|388413438|gb|EIL73430.1| DNA primase [Escherichia coli HM605]
gi|430874576|gb|ELB98132.1| DNA primase [Escherichia coli KTE4]
gi|430884096|gb|ELC07067.1| DNA primase [Escherichia coli KTE5]
gi|430933834|gb|ELC54225.1| DNA primase [Escherichia coli KTE39]
gi|430961121|gb|ELC79168.1| DNA primase [Escherichia coli KTE188]
gi|430980421|gb|ELC97181.1| DNA primase [Escherichia coli KTE201]
gi|431021764|gb|ELD35085.1| DNA primase [Escherichia coli KTE214]
gi|431036102|gb|ELD47478.1| DNA primase [Escherichia coli KTE220]
gi|431049066|gb|ELD59030.1| DNA primase [Escherichia coli KTE230]
gi|431098205|gb|ELE03528.1| DNA primase [Escherichia coli KTE53]
gi|431105867|gb|ELE10201.1| DNA primase [Escherichia coli KTE55]
gi|431118826|gb|ELE21845.1| DNA primase [Escherichia coli KTE58]
gi|431126684|gb|ELE29031.1| DNA primase [Escherichia coli KTE60]
gi|431129206|gb|ELE31382.1| DNA primase [Escherichia coli KTE62]
gi|431136222|gb|ELE38091.1| DNA primase [Escherichia coli KTE67]
gi|431188408|gb|ELE87850.1| DNA primase [Escherichia coli KTE87]
gi|431300293|gb|ELF89846.1| DNA primase [Escherichia coli KTE22]
gi|431325341|gb|ELG12729.1| DNA primase [Escherichia coli KTE59]
gi|431328211|gb|ELG15531.1| DNA primase [Escherichia coli KTE63]
gi|431366315|gb|ELG52813.1| DNA primase [Escherichia coli KTE118]
gi|431378506|gb|ELG63497.1| DNA primase [Escherichia coli KTE123]
gi|431487355|gb|ELH67000.1| DNA primase [Escherichia coli KTE209]
gi|431503644|gb|ELH82379.1| DNA primase [Escherichia coli KTE218]
gi|431505762|gb|ELH84367.1| DNA primase [Escherichia coli KTE223]
gi|431511361|gb|ELH89493.1| DNA primase [Escherichia coli KTE227]
gi|431522317|gb|ELH99552.1| DNA primase [Escherichia coli KTE229]
gi|431567413|gb|ELI40413.1| DNA primase [Escherichia coli KTE124]
gi|431602645|gb|ELI72075.1| DNA primase [Escherichia coli KTE137]
gi|431632163|gb|ELJ00466.1| DNA primase [Escherichia coli KTE153]
gi|431642203|gb|ELJ09927.1| DNA primase [Escherichia coli KTE160]
gi|431657702|gb|ELJ24665.1| DNA primase [Escherichia coli KTE167]
gi|431668427|gb|ELJ34953.1| DNA primase [Escherichia coli KTE174]
gi|431671372|gb|ELJ37653.1| DNA primase [Escherichia coli KTE176]
gi|431684838|gb|ELJ50443.1| DNA primase [Escherichia coli KTE179]
gi|431686328|gb|ELJ51894.1| DNA primase [Escherichia coli KTE180]
gi|431733020|gb|ELJ96462.1| DNA primase [Escherichia coli KTE99]
gi|441713759|emb|CCQ06086.1| DNA primase [Escherichia coli Nissle 1917]
Length = 581
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLVDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|237803343|ref|ZP_04590928.1| DNA primase, partial [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331025324|gb|EGI05380.1| DNA primase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 473
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 188/327 (57%), Gaps = 17/327 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A++FY+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKVMIDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ A L +F E++ + ++++ L +P
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFK 322
++LR + L++I ++ ++ L +
Sbjct: 408 ANLRILMRQRLTEITGLTGEAVSQLVQ 434
>gi|440232603|ref|YP_007346396.1| DNA primase, catalytic core [Serratia marcescens FGI94]
gi|440054308|gb|AGB84211.1| DNA primase, catalytic core [Serratia marcescens FGI94]
Length = 583
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 132/391 (33%), Positives = 213/391 (54%), Gaps = 31/391 (7%)
Query: 5 SDFYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ +Q N K+A ++L++RGL++E+I F +G+AP W NAL + + + L
Sbjct: 124 STFYQQSLQQPNGKQARDYLQQRGLSDEVIRHFAIGFAPAGWDNALKRFGRERDGRTALN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V ++ + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIAFGGRVLGDGM-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKS-GYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
NSPET +FHK +LYGL+EA+ + K +L+ EGYMDV+ L+QFG VA LGT+ T
Sbjct: 232 NSPETEVFHKGRQLYGLYEAQQSHPKQLQRLLVVEGYMDVVALAQFGIDYAVASLGTSTT 291
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ HI+ + T++++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +
Sbjct: 292 AEHIQLMFRATDNVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLV 351
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+ G + F +++ +A L F E ++ +L + K L +P +LR
Sbjct: 352 RQEGKEAFEQRMEQAQPLSTFLFETLLPQVDLSSPDGRTKLSALALPLISQVP-GETLRL 410
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMK----LLISYP 355
+ L N++ L + K E N Q ++ M+ LL+ P
Sbjct: 411 YLRQQLG-------NKLGLLDDSQLDRLMPKQAENANTYQAPQLKRTTMRILIGLLVQNP 463
Query: 356 SLINEINSEDMIIFSKCSQNYVKMFFQLIDT 386
L + S D + + Q + +F +L+ T
Sbjct: 464 QLAALVPSLDGL--EQTKQAGLPLFVELVQT 492
>gi|432789091|ref|ZP_20023219.1| DNA primase [Escherichia coli KTE65]
gi|431336091|gb|ELG23220.1| DNA primase [Escherichia coli KTE65]
Length = 581
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLVDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTTDH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|366160074|ref|ZP_09459936.1| DNA primase [Escherichia sp. TW09308]
gi|432373658|ref|ZP_19616692.1| DNA primase [Escherichia coli KTE11]
gi|430894182|gb|ELC16473.1| DNA primase [Escherichia coli KTE11]
Length = 581
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 171/271 (63%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLD-YNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W+ + K F D N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGDNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPQRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|188532570|ref|YP_001906367.1| DNA primase [Erwinia tasmaniensis Et1/99]
gi|188027612|emb|CAO95462.1| DNA primase [Erwinia tasmaniensis Et1/99]
Length = 581
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/277 (40%), Positives = 172/277 (62%), Gaps = 15/277 (5%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M DFY+ L + S A ++L +RGL++E+I F++G+AP W NAL + + ++
Sbjct: 120 MTGLRDFYQQSLDHGQSAGARDYLAQRGLSDEVIKHFSIGFAPAGWDNALKRFGSNPDDR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+L +G++V ++ + YDRFR R+MFPI + G++IGFGGR++ D
Sbjct: 180 QSLIDAGMLVTN-----------DQGRSYDRFRERVMFPIHDKRGRVIGFGGRVLGDGM- 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA + +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETDIFHKGRQLYGLYEALKNHPEPARLLVVEGYMDVVALAQFGVDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 STTAEHIQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
+ +RK G F K++ +AM L F + ++ +L T
Sbjct: 348 TLVRKEGKDAFEKRMEQAMPLSTFLYDTLLPQVDLST 384
>gi|398799725|ref|ZP_10559007.1| DNA primase, catalytic core [Pantoea sp. GM01]
gi|398097727|gb|EJL88030.1| DNA primase, catalytic core [Pantoea sp. GM01]
Length = 581
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+N ++ A +L RGL++E+I F +GYAP W NAL + ++ +L +
Sbjct: 126 FYQQSLRNPQAQSAQKYLATRGLSQEVIDHFAIGYAPAGWDNALKRFGQQKDDRESLMEA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V + + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVSN-----------DSGRTYDRFRDRVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+ H
Sbjct: 234 PETPIFHKGRQLYGLYEAQKNHPQPARLLVVEGYMDVVALAQFGIDYAVASLGTSTTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++ + T+++I +DGD+AGR AA R LE L Y D + ++F+FLPD DPD+ +RK
Sbjct: 294 VQLLYRSTDTVICCYDGDRAGREAAWRTLETALPYMNDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +A L F + ++ +L T
Sbjct: 354 GKEAFEARMEQATPLSTFLFDSLMPQVDLST 384
>gi|322831340|ref|YP_004211367.1| DNA primase [Rahnella sp. Y9602]
gi|384256454|ref|YP_005400388.1| DNA primase [Rahnella aquatilis HX2]
gi|321166541|gb|ADW72240.1| DNA primase [Rahnella sp. Y9602]
gi|380752430|gb|AFE56821.1| DNA primase [Rahnella aquatilis HX2]
Length = 582
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 133/394 (33%), Positives = 212/394 (53%), Gaps = 30/394 (7%)
Query: 1 MICASDFYKIQLKNSK--EAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S+FY+ LK + A +L +RGL+E++I F +G+AP W NAL + + ++
Sbjct: 120 MAPLSEFYQQSLKQAAGAPAREYLARRGLSEDVISHFAIGFAPPGWDNALKRFGKNADDK 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+L +G++V + + YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 180 ASLIDAGMLVTN-----------DNGRSYDRFRERVMFPIRDKRGRVIAFGGRVLGDGT- 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETEIFHKGRQLYGLYEAQLKHPTPARLLVVEGYMDVVALAQFGIDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T+ HI+ + T++I+ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 STTADHIQLMFRSTDNIVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G + F +++ +AM L F + ++ +L + K L + +P +
Sbjct: 348 TLVRKEGKEAFEQRMEQAMPLSTFLFDSLLPQVDLSSPDGRTKLSMLALPLIRQVP-GET 406
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMK----LLI 352
LR + L N++ L + K E N+ Q ++ M+ LL+
Sbjct: 407 LRMYLRQQLG-------NKLGILDDSQLEKLMPKQAESSNVYQAPQLKRTTMRILIGLLV 459
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDT 386
P L I S + + Q + +F +L+ T
Sbjct: 460 QNPQLATLIPS--LQGLEQAKQPGLDLFSELVTT 491
>gi|167622944|ref|YP_001673238.1| DNA primase [Shewanella halifaxensis HAW-EB4]
gi|167352966|gb|ABZ75579.1| DNA primase [Shewanella halifaxensis HAW-EB4]
Length = 576
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 129/369 (34%), Positives = 210/369 (56%), Gaps = 35/369 (9%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNN 56
M AS F++ QL+ + ++ +++LK RGL++E++ FN+G+AP+ W+ L ++ + ++
Sbjct: 117 MEEASLFFQSQLRQHTDKQKVLDYLKHRGLSKEVVEHFNIGFAPDGWDGLLSRYRQNQDS 176
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ L ++G+V++ + KRYDRFR R+MFPI++ G++IGFGGR++ D
Sbjct: 177 QDKLLTAGMVIEN-----------DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT 225
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPETP+FHK NELYGL+E K + VLI EGYMDV+ L+QF VA LG
Sbjct: 226 -PKYLNSPETPIFHKGNELYGLYELKQRHREPQRVLIVEGYMDVVALAQFDVDYAVASLG 284
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
T+ T+ + +L +I +DGD+AG+ AA RALE L ++F+FLP+ DP
Sbjct: 285 TSTTAEQFQLLLRSAKEVICCYDGDKAGKEAAWRALETALPLLKPGNQVRFMFLPEGEDP 344
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLK--------TIKDIEKSKYNIEYL 288
D+ +R+ G + F ++ +AM+L +F E +I Y + IK IEK + +
Sbjct: 345 DTLVRQIGKQEFEAQIDQAMALPEFLFENLIKTYGNEDKSVLAKNAIKLIEKVQDTVLQS 404
Query: 289 FKIIPLSSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIM 348
+ L+ LR L + K +F+ K +HK ++ + P+ + +
Sbjct: 405 LLLEDLAHKLRMNGADELKR--KFNFST-----KAAEKPNQHKALKGRGT-PLRL---AI 453
Query: 349 KLLISYPSL 357
LL+ +P L
Sbjct: 454 ALLVQHPHL 462
>gi|417630520|ref|ZP_12280755.1| DNA primase [Escherichia coli STEC_MHI813]
gi|345370921|gb|EGX02895.1| DNA primase [Escherichia coli STEC_MHI813]
Length = 581
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 171/271 (63%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNTEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F +++ +AM L F ++ +L T
Sbjct: 354 GKEAFEERMEQAMPLSAFLFNSLMPQVDLST 384
>gi|423125841|ref|ZP_17113520.1| DNA primase [Klebsiella oxytoca 10-5250]
gi|376398416|gb|EHT11042.1| DNA primase [Klebsiella oxytoca 10-5250]
Length = 587
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/271 (41%), Positives = 166/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + A +L+KRGL+ EII RF +GYAP W N L + + N +L +
Sbjct: 132 FYQQSLMQPAAAPARQYLEKRGLSSEIITRFAIGYAPPGWDNVLKRFGGNQENRQSLIDA 191
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 192 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 239
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+ H
Sbjct: 240 PETDIFHKGRQLYGLYEAQQDNAEPSRLLVVEGYMDVVALAQFGINYAVASLGTSTTADH 299
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN ++ +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 300 IQLLFRVTNQVVCCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 359
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 360 GKDAFEARMEQAQPLSTFLFNSLLPQVDLST 390
>gi|415839396|ref|ZP_11521138.1| DNA primase [Escherichia coli RN587/1]
gi|417280482|ref|ZP_12067782.1| DNA primase [Escherichia coli 3003]
gi|425279471|ref|ZP_18670700.1| DNA primase [Escherichia coli ARS4.2123]
gi|432393668|ref|ZP_19636492.1| DNA primase [Escherichia coli KTE21]
gi|323188490|gb|EFZ73775.1| DNA primase [Escherichia coli RN587/1]
gi|386244811|gb|EII86541.1| DNA primase [Escherichia coli 3003]
gi|408199268|gb|EKI24473.1| DNA primase [Escherichia coli ARS4.2123]
gi|430915347|gb|ELC36426.1| DNA primase [Escherichia coli KTE21]
Length = 581
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKQAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|15803608|ref|NP_289641.1| DNA primase [Escherichia coli O157:H7 str. EDL933]
gi|25298043|pir||D85967 DNA biosynthesis, DNA primase [imported] - Escherichia coli
(strain O157:H7, substrain EDL933)
gi|12517648|gb|AAG58200.1|AE005536_1 DNA biosynthesis; DNA primase [Escherichia coli O157:H7 str.
EDL933]
Length = 581
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|422779963|ref|ZP_16832748.1| DNA primase [Escherichia coli TW10509]
gi|323978860|gb|EGB73940.1| DNA primase [Escherichia coli TW10509]
Length = 581
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|432618327|ref|ZP_19854432.1| DNA primase [Escherichia coli KTE75]
gi|431152083|gb|ELE53041.1| DNA primase [Escherichia coli KTE75]
Length = 581
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKQAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|419393212|ref|ZP_13934015.1| DNA primase [Escherichia coli DEC15A]
gi|419398318|ref|ZP_13939081.1| DNA primase [Escherichia coli DEC15B]
gi|419403601|ref|ZP_13944321.1| DNA primase [Escherichia coli DEC15C]
gi|419408756|ref|ZP_13949442.1| DNA primase [Escherichia coli DEC15D]
gi|419414304|ref|ZP_13954943.1| DNA primase [Escherichia coli DEC15E]
gi|378236180|gb|EHX96235.1| DNA primase [Escherichia coli DEC15A]
gi|378241252|gb|EHY01219.1| DNA primase [Escherichia coli DEC15B]
gi|378245856|gb|EHY05793.1| DNA primase [Escherichia coli DEC15C]
gi|378253317|gb|EHY13195.1| DNA primase [Escherichia coli DEC15D]
gi|378258075|gb|EHY17910.1| DNA primase [Escherichia coli DEC15E]
Length = 581
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTANH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|416899392|ref|ZP_11928874.1| DNA primase [Escherichia coli STEC_7v]
gi|417117188|ref|ZP_11968049.1| DNA primase [Escherichia coli 1.2741]
gi|422801018|ref|ZP_16849515.1| DNA primase [Escherichia coli M863]
gi|323966595|gb|EGB62028.1| DNA primase [Escherichia coli M863]
gi|327251852|gb|EGE63538.1| DNA primase [Escherichia coli STEC_7v]
gi|386139732|gb|EIG80887.1| DNA primase [Escherichia coli 1.2741]
Length = 581
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|300977466|ref|ZP_07173929.1| DNA primase [Escherichia coli MS 200-1]
gi|422376693|ref|ZP_16456942.1| DNA primase [Escherichia coli MS 60-1]
gi|432472427|ref|ZP_19714465.1| DNA primase [Escherichia coli KTE206]
gi|432714927|ref|ZP_19949955.1| DNA primase [Escherichia coli KTE8]
gi|433079266|ref|ZP_20265786.1| DNA primase [Escherichia coli KTE131]
gi|300308324|gb|EFJ62844.1| DNA primase [Escherichia coli MS 200-1]
gi|324011985|gb|EGB81204.1| DNA primase [Escherichia coli MS 60-1]
gi|430996211|gb|ELD12497.1| DNA primase [Escherichia coli KTE206]
gi|431253785|gb|ELF47263.1| DNA primase [Escherichia coli KTE8]
gi|431594469|gb|ELI64749.1| DNA primase [Escherichia coli KTE131]
Length = 581
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|215488397|ref|YP_002330828.1| DNA primase [Escherichia coli O127:H6 str. E2348/69]
gi|417757428|ref|ZP_12405494.1| DNA primase [Escherichia coli DEC2B]
gi|418998403|ref|ZP_13545989.1| DNA primase [Escherichia coli DEC1A]
gi|419003803|ref|ZP_13551316.1| DNA primase [Escherichia coli DEC1B]
gi|419009475|ref|ZP_13556894.1| DNA primase [Escherichia coli DEC1C]
gi|419015058|ref|ZP_13562399.1| DNA primase [Escherichia coli DEC1D]
gi|419020107|ref|ZP_13567407.1| DNA primase [Escherichia coli DEC1E]
gi|419025458|ref|ZP_13572679.1| DNA primase [Escherichia coli DEC2A]
gi|419030701|ref|ZP_13577850.1| DNA primase [Escherichia coli DEC2C]
gi|419036265|ref|ZP_13583342.1| DNA primase [Escherichia coli DEC2D]
gi|215266469|emb|CAS10907.1| DNA primase [Escherichia coli O127:H6 str. E2348/69]
gi|377841040|gb|EHU06107.1| DNA primase [Escherichia coli DEC1A]
gi|377841308|gb|EHU06374.1| DNA primase [Escherichia coli DEC1C]
gi|377844476|gb|EHU09512.1| DNA primase [Escherichia coli DEC1B]
gi|377854591|gb|EHU19468.1| DNA primase [Escherichia coli DEC1D]
gi|377857790|gb|EHU22638.1| DNA primase [Escherichia coli DEC1E]
gi|377861789|gb|EHU26606.1| DNA primase [Escherichia coli DEC2A]
gi|377871723|gb|EHU36381.1| DNA primase [Escherichia coli DEC2B]
gi|377874461|gb|EHU39088.1| DNA primase [Escherichia coli DEC2C]
gi|377876711|gb|EHU41310.1| DNA primase [Escherichia coli DEC2D]
Length = 581
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|422332547|ref|ZP_16413560.1| DNA primase [Escherichia coli 4_1_47FAA]
gi|373246579|gb|EHP66032.1| DNA primase [Escherichia coli 4_1_47FAA]
Length = 581
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|146281107|ref|YP_001171260.1| DNA primase [Pseudomonas stutzeri A1501]
gi|145569312|gb|ABP78418.1| DNA primase [Pseudomonas stutzeri A1501]
Length = 650
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 189/336 (56%), Gaps = 30/336 (8%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+D+Y+ LK+ K A+ +LK RGL+ I F LG+AP W+ L K + D
Sbjct: 120 LAAAADYYRQALKSHPTRKAAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHLGGDALQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
L +GL+++ N KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKALIDAGLLIENAENG----------KRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ A +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARQANRDLDEIMVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGD AGR+AA RALE L D + +FLFLPD DP
Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLE-AMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ + + L +F +++ E ++E + L+
Sbjct: 349 DTLVRAEGTDAFRARIQQHSQPLADYFFQQL----------SEEADPRSLEGKAHLATLA 398
Query: 296 SSLRFKIIS-SLSKIIKVSFNEINNLFKINTSSIKH 330
+ L KI +L +++ EI L N +++H
Sbjct: 399 APLIEKIPGNNLRALMRQRLAEITGL---NGEALQH 431
>gi|429111583|ref|ZP_19173353.1| DNA primase [Cronobacter malonaticus 507]
gi|426312740|emb|CCJ99466.1| DNA primase [Cronobacter malonaticus 507]
Length = 583
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 138/436 (31%), Positives = 231/436 (52%), Gaps = 28/436 (6%)
Query: 7 FYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ +Q ++++ A +L KRGL+E +I RF +GYAP W N L + + N +L +
Sbjct: 126 FYRQALQAQSAEPARQYLAKRGLSESVIERFAIGYAPPGWDNVLKRFGNNSENRKSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+E + + +L+ EGYMDV+ LSQ+ VA LGTA T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEVQQSDPNPPRLLVVEGYMDVVALSQYDINYAVASLGTATTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +R+
Sbjct: 294 IQMLFRVTNNVICCYDGDRAGRSAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRQE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F ++ +A L F ++ +L T + L +P +LR +
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLLPQVDLSTPDGRAQLSTLALPLISQVP-GETLRIYLR 412
Query: 304 SSLS-KIIKVSFNEINNLF--KINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
L K+ + +++ L + + S + K+ I I LL+ P L
Sbjct: 413 QELGNKLGILDDSQLERLMTRQADNSQTRPAPTLKRTTMRILI-----GLLVQNPELAPL 467
Query: 361 INSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQDN 420
+ S + K +++F +L++T + + + + +++ + + + D+
Sbjct: 468 VPS--LTALDKTKLPGLELFAELVNTC-LSQPGLTTGQLLEHYRGTKEAATLEKLSTWDD 524
Query: 421 FEYSIEIAKKTLLDAI 436
+IA+KT DA+
Sbjct: 525 IA-DKDIAEKTFTDAL 539
>gi|331684718|ref|ZP_08385310.1| DNA primase [Escherichia coli H299]
gi|387608794|ref|YP_006097650.1| DNA primase [Escherichia coli 042]
gi|422969766|ref|ZP_16973559.1| DNA primase [Escherichia coli TA124]
gi|450204426|ref|ZP_21893608.1| DNA primase [Escherichia coli SEPT362]
gi|284923094|emb|CBG36187.1| DNA primase [Escherichia coli 042]
gi|331078333|gb|EGI49539.1| DNA primase [Escherichia coli H299]
gi|371601031|gb|EHN89800.1| DNA primase [Escherichia coli TA124]
gi|449311796|gb|EMD02120.1| DNA primase [Escherichia coli SEPT362]
Length = 581
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|157162542|ref|YP_001459860.1| DNA primase [Escherichia coli HS]
gi|170018682|ref|YP_001723636.1| DNA primase [Escherichia coli ATCC 8739]
gi|188494232|ref|ZP_03001502.1| DNA primase [Escherichia coli 53638]
gi|312972669|ref|ZP_07786842.1| DNA primase [Escherichia coli 1827-70]
gi|422771059|ref|ZP_16824749.1| DNA primase [Escherichia coli E482]
gi|157068222|gb|ABV07477.1| DNA primase [Escherichia coli HS]
gi|169753610|gb|ACA76309.1| DNA primase [Escherichia coli ATCC 8739]
gi|188489431|gb|EDU64534.1| DNA primase [Escherichia coli 53638]
gi|310332611|gb|EFP99824.1| DNA primase [Escherichia coli 1827-70]
gi|323941836|gb|EGB38015.1| DNA primase [Escherichia coli E482]
Length = 581
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|306816580|ref|ZP_07450712.1| DNA primase [Escherichia coli NC101]
gi|417285507|ref|ZP_12072798.1| DNA primase [Escherichia coli TW07793]
gi|432382810|ref|ZP_19625749.1| DNA primase [Escherichia coli KTE15]
gi|432388841|ref|ZP_19631721.1| DNA primase [Escherichia coli KTE16]
gi|432467393|ref|ZP_19709472.1| DNA primase [Escherichia coli KTE205]
gi|432515477|ref|ZP_19752693.1| DNA primase [Escherichia coli KTE224]
gi|432581726|ref|ZP_19818140.1| DNA primase [Escherichia coli KTE57]
gi|432613091|ref|ZP_19849249.1| DNA primase [Escherichia coli KTE72]
gi|432647759|ref|ZP_19883545.1| DNA primase [Escherichia coli KTE86]
gi|432657322|ref|ZP_19893019.1| DNA primase [Escherichia coli KTE93]
gi|432700603|ref|ZP_19935748.1| DNA primase [Escherichia coli KTE169]
gi|432747065|ref|ZP_19981727.1| DNA primase [Escherichia coli KTE43]
gi|432906729|ref|ZP_20115268.1| DNA primase [Escherichia coli KTE194]
gi|432939708|ref|ZP_20137811.1| DNA primase [Escherichia coli KTE183]
gi|432973360|ref|ZP_20162206.1| DNA primase [Escherichia coli KTE207]
gi|432986934|ref|ZP_20175647.1| DNA primase [Escherichia coli KTE215]
gi|433040077|ref|ZP_20227672.1| DNA primase [Escherichia coli KTE113]
gi|433074332|ref|ZP_20260974.1| DNA primase [Escherichia coli KTE129]
gi|433084002|ref|ZP_20270453.1| DNA primase [Escherichia coli KTE133]
gi|433102663|ref|ZP_20288738.1| DNA primase [Escherichia coli KTE145]
gi|433145673|ref|ZP_20330809.1| DNA primase [Escherichia coli KTE168]
gi|433184795|ref|ZP_20369033.1| DNA primase [Escherichia coli KTE85]
gi|433189864|ref|ZP_20373955.1| DNA primase [Escherichia coli KTE88]
gi|305850145|gb|EFM50604.1| DNA primase [Escherichia coli NC101]
gi|386250748|gb|EII96915.1| DNA primase [Escherichia coli TW07793]
gi|430904311|gb|ELC26020.1| DNA primase [Escherichia coli KTE16]
gi|430905870|gb|ELC27478.1| DNA primase [Escherichia coli KTE15]
gi|430991879|gb|ELD08278.1| DNA primase [Escherichia coli KTE205]
gi|431039084|gb|ELD49970.1| DNA primase [Escherichia coli KTE224]
gi|431122008|gb|ELE24877.1| DNA primase [Escherichia coli KTE57]
gi|431147274|gb|ELE48697.1| DNA primase [Escherichia coli KTE72]
gi|431179106|gb|ELE79013.1| DNA primase [Escherichia coli KTE86]
gi|431188779|gb|ELE88220.1| DNA primase [Escherichia coli KTE93]
gi|431241083|gb|ELF35530.1| DNA primase [Escherichia coli KTE169]
gi|431290177|gb|ELF80902.1| DNA primase [Escherichia coli KTE43]
gi|431429177|gb|ELH11107.1| DNA primase [Escherichia coli KTE194]
gi|431461378|gb|ELH41646.1| DNA primase [Escherichia coli KTE183]
gi|431479786|gb|ELH59519.1| DNA primase [Escherichia coli KTE207]
gi|431496190|gb|ELH75774.1| DNA primase [Escherichia coli KTE215]
gi|431549888|gb|ELI23963.1| DNA primase [Escherichia coli KTE113]
gi|431584730|gb|ELI56705.1| DNA primase [Escherichia coli KTE129]
gi|431599494|gb|ELI69200.1| DNA primase [Escherichia coli KTE133]
gi|431617464|gb|ELI86480.1| DNA primase [Escherichia coli KTE145]
gi|431659504|gb|ELJ26398.1| DNA primase [Escherichia coli KTE168]
gi|431703407|gb|ELJ68094.1| DNA primase [Escherichia coli KTE85]
gi|431703752|gb|ELJ68438.1| DNA primase [Escherichia coli KTE88]
Length = 581
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|417162678|ref|ZP_11998008.1| DNA primase [Escherichia coli 99.0741]
gi|386173169|gb|EIH45181.1| DNA primase [Escherichia coli 99.0741]
Length = 581
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|331654665|ref|ZP_08355665.1| DNA primase [Escherichia coli M718]
gi|331048047|gb|EGI20124.1| DNA primase [Escherichia coli M718]
Length = 581
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSAHQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|193062012|ref|ZP_03043108.1| DNA primase [Escherichia coli E22]
gi|192932232|gb|EDV84830.1| DNA primase [Escherichia coli E22]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|375257436|ref|YP_005016606.1| DNA primase [Klebsiella oxytoca KCTC 1686]
gi|397660045|ref|YP_006500747.1| DNA primase [Klebsiella oxytoca E718]
gi|365906914|gb|AEX02367.1| DNA primase [Klebsiella oxytoca KCTC 1686]
gi|394348131|gb|AFN34252.1| DNA primase [Klebsiella oxytoca E718]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 166/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + A +L+KRGL+ E+I RF +GYAP W N L + + N +L +
Sbjct: 126 FYQQSLMQPAAGPARQYLEKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDAM-PKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPPRLLVVEGYMDVVALAQFGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN ++ +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNQVVCCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLLPQVDLST 384
>gi|416340987|ref|ZP_11675708.1| DNA primase [Escherichia coli EC4100B]
gi|320201976|gb|EFW76551.1| DNA primase [Escherichia coli EC4100B]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|15833203|ref|NP_311976.1| DNA primase [Escherichia coli O157:H7 str. Sakai]
gi|16130962|ref|NP_417538.1| DNA primase [Escherichia coli str. K-12 substr. MG1655]
gi|24114366|ref|NP_708876.1| DNA primase [Shigella flexneri 2a str. 301]
gi|30064414|ref|NP_838585.1| DNA primase [Shigella flexneri 2a str. 2457T]
gi|74313601|ref|YP_312020.1| DNA primase [Shigella sonnei Ss046]
gi|110643310|ref|YP_671040.1| DNA primase [Escherichia coli 536]
gi|157156565|ref|YP_001464527.1| DNA primase [Escherichia coli E24377A]
gi|168754038|ref|ZP_02779045.1| DNA primase [Escherichia coli O157:H7 str. EC4401]
gi|168769475|ref|ZP_02794482.1| DNA primase [Escherichia coli O157:H7 str. EC4486]
gi|168773277|ref|ZP_02798284.1| DNA primase [Escherichia coli O157:H7 str. EC4196]
gi|168781201|ref|ZP_02806208.1| DNA primase [Escherichia coli O157:H7 str. EC4076]
gi|168785941|ref|ZP_02810948.1| DNA primase [Escherichia coli O157:H7 str. EC869]
gi|168797658|ref|ZP_02822665.1| DNA primase [Escherichia coli O157:H7 str. EC508]
gi|170082609|ref|YP_001731929.1| DNA primase [Escherichia coli str. K-12 substr. DH10B]
gi|170680884|ref|YP_001745338.1| DNA primase [Escherichia coli SMS-3-5]
gi|193067246|ref|ZP_03048214.1| DNA primase [Escherichia coli E110019]
gi|194427677|ref|ZP_03060224.1| DNA primase [Escherichia coli B171]
gi|194439800|ref|ZP_03071866.1| DNA primase [Escherichia coli 101-1]
gi|195937212|ref|ZP_03082594.1| DNA primase [Escherichia coli O157:H7 str. EC4024]
gi|208811926|ref|ZP_03253255.1| DNA primase [Escherichia coli O157:H7 str. EC4045]
gi|208820632|ref|ZP_03260952.1| DNA primase [Escherichia coli O157:H7 str. EC4042]
gi|209396560|ref|YP_002272539.1| DNA primase [Escherichia coli O157:H7 str. EC4115]
gi|209920538|ref|YP_002294622.1| DNA primase [Escherichia coli SE11]
gi|217327354|ref|ZP_03443437.1| DNA primase [Escherichia coli O157:H7 str. TW14588]
gi|218555636|ref|YP_002388549.1| DNA primase [Escherichia coli IAI1]
gi|218691371|ref|YP_002399583.1| DNA primase [Escherichia coli ED1a]
gi|218696771|ref|YP_002404438.1| DNA primase [Escherichia coli 55989]
gi|218706691|ref|YP_002414210.1| DNA primase [Escherichia coli UMN026]
gi|222157793|ref|YP_002557932.1| DNA primase [Escherichia coli LF82]
gi|238902177|ref|YP_002927973.1| DNA primase [Escherichia coli BW2952]
gi|251786343|ref|YP_003000647.1| DNA primase, subunit of primosome [Escherichia coli BL21(DE3)]
gi|253772098|ref|YP_003034929.1| DNA primase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254163013|ref|YP_003046121.1| DNA primase [Escherichia coli B str. REL606]
gi|254289763|ref|YP_003055511.1| DNA primase [Escherichia coli BL21(DE3)]
gi|254795017|ref|YP_003079854.1| DNA primase [Escherichia coli O157:H7 str. TW14359]
gi|260845820|ref|YP_003223598.1| DNA primase DnaG [Escherichia coli O103:H2 str. 12009]
gi|261228079|ref|ZP_05942360.1| DNA primase [Escherichia coli O157:H7 str. FRIK2000]
gi|261254935|ref|ZP_05947468.1| DNA primase DnaG [Escherichia coli O157:H7 str. FRIK966]
gi|291284445|ref|YP_003501263.1| DNA primase [Escherichia coli O55:H7 str. CB9615]
gi|293406679|ref|ZP_06650605.1| DNA primase [Escherichia coli FVEC1412]
gi|293412443|ref|ZP_06655166.1| DNA primase [Escherichia coli B354]
gi|297518948|ref|ZP_06937334.1| DNA primase [Escherichia coli OP50]
gi|298382420|ref|ZP_06992017.1| DNA primase [Escherichia coli FVEC1302]
gi|300818833|ref|ZP_07099039.1| DNA primase [Escherichia coli MS 107-1]
gi|300821661|ref|ZP_07101807.1| DNA primase [Escherichia coli MS 119-7]
gi|300901449|ref|ZP_07119534.1| DNA primase [Escherichia coli MS 198-1]
gi|300905792|ref|ZP_07123526.1| DNA primase [Escherichia coli MS 84-1]
gi|300917394|ref|ZP_07134060.1| DNA primase [Escherichia coli MS 115-1]
gi|300923728|ref|ZP_07139753.1| DNA primase [Escherichia coli MS 182-1]
gi|300931952|ref|ZP_07147249.1| DNA primase [Escherichia coli MS 187-1]
gi|300937449|ref|ZP_07152275.1| DNA primase [Escherichia coli MS 21-1]
gi|300950723|ref|ZP_07164611.1| DNA primase [Escherichia coli MS 116-1]
gi|300958454|ref|ZP_07170593.1| DNA primase [Escherichia coli MS 175-1]
gi|301021227|ref|ZP_07185259.1| DNA primase [Escherichia coli MS 196-1]
gi|301021859|ref|ZP_07185822.1| DNA primase [Escherichia coli MS 69-1]
gi|301301892|ref|ZP_07208026.1| DNA primase [Escherichia coli MS 124-1]
gi|301325580|ref|ZP_07219048.1| DNA primase [Escherichia coli MS 78-1]
gi|301644763|ref|ZP_07244738.1| DNA primase [Escherichia coli MS 146-1]
gi|307310309|ref|ZP_07589957.1| DNA primase [Escherichia coli W]
gi|309793631|ref|ZP_07688057.1| DNA primase [Escherichia coli MS 145-7]
gi|331643764|ref|ZP_08344895.1| DNA primase [Escherichia coli H736]
gi|331664679|ref|ZP_08365585.1| DNA primase [Escherichia coli TA143]
gi|331669910|ref|ZP_08370755.1| DNA primase [Escherichia coli TA271]
gi|331674605|ref|ZP_08375365.1| DNA primase [Escherichia coli TA280]
gi|331679142|ref|ZP_08379814.1| DNA primase [Escherichia coli H591]
gi|332280116|ref|ZP_08392529.1| DNA primase [Shigella sp. D9]
gi|378711477|ref|YP_005276370.1| DNA primase [Escherichia coli KO11FL]
gi|383180243|ref|YP_005458248.1| DNA primase [Shigella sonnei 53G]
gi|384544668|ref|YP_005728732.1| DNA primase [Shigella flexneri 2002017]
gi|386282179|ref|ZP_10059832.1| DNA primase [Escherichia sp. 4_1_40B]
gi|386594210|ref|YP_006090610.1| DNA primase [Escherichia coli DH1]
gi|386610457|ref|YP_006125943.1| DNA primase [Escherichia coli W]
gi|386615851|ref|YP_006135517.1| DNA primase DnaG [Escherichia coli UMNK88]
gi|386625875|ref|YP_006145603.1| DNA primase [Escherichia coli O7:K1 str. CE10]
gi|386699973|ref|YP_006163810.1| DNA primase [Escherichia coli KO11FL]
gi|386706316|ref|YP_006170163.1| DNA primase [Escherichia coli P12b]
gi|386710970|ref|YP_006174691.1| DNA primase [Escherichia coli W]
gi|387508473|ref|YP_006160729.1| DNA primase [Escherichia coli O55:H7 str. RM12579]
gi|387613761|ref|YP_006116877.1| DNA primase [Escherichia coli ETEC H10407]
gi|387618376|ref|YP_006121398.1| DNA primase [Escherichia coli O83:H1 str. NRG 857C]
gi|387622735|ref|YP_006130363.1| DNA primase [Escherichia coli DH1]
gi|387884254|ref|YP_006314556.1| DNA primase [Escherichia coli Xuzhou21]
gi|388479066|ref|YP_491258.1| DNA primase [Escherichia coli str. K-12 substr. W3110]
gi|404376462|ref|ZP_10981622.1| DNA primase [Escherichia sp. 1_1_43]
gi|407471038|ref|YP_006782519.1| DNA primase [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407480305|ref|YP_006777454.1| DNA primase [Escherichia coli O104:H4 str. 2011C-3493]
gi|410480865|ref|YP_006768411.1| DNA primase [Escherichia coli O104:H4 str. 2009EL-2050]
gi|414577838|ref|ZP_11435012.1| DNA primase [Shigella sonnei 3233-85]
gi|415776221|ref|ZP_11487805.1| DNA primase [Escherichia coli 3431]
gi|415795489|ref|ZP_11497050.1| DNA primase [Escherichia coli E128010]
gi|415811314|ref|ZP_11503664.1| DNA primase [Escherichia coli LT-68]
gi|415830550|ref|ZP_11516452.1| DNA primase [Escherichia coli OK1357]
gi|415845262|ref|ZP_11524860.1| DNA primase [Shigella sonnei 53G]
gi|415858129|ref|ZP_11532741.1| DNA primase [Shigella flexneri 2a str. 2457T]
gi|415861679|ref|ZP_11535289.1| DNA primase [Escherichia coli MS 85-1]
gi|415875019|ref|ZP_11541884.1| DNA primase [Escherichia coli MS 79-10]
gi|416263799|ref|ZP_11640851.1| DNA primase [Shigella dysenteriae CDC 74-1112]
gi|416305835|ref|ZP_11654372.1| DNA primase [Shigella flexneri CDC 796-83]
gi|416308374|ref|ZP_11655050.1| DNA primase [Escherichia coli O157:H7 str. 1044]
gi|416322237|ref|ZP_11664085.1| DNA primase [Escherichia coli O157:H7 str. EC1212]
gi|416332478|ref|ZP_11670389.1| DNA primase [Escherichia coli O157:H7 str. 1125]
gi|416777568|ref|ZP_11875219.1| DNA primase [Escherichia coli O157:H7 str. G5101]
gi|416788963|ref|ZP_11880145.1| DNA primase [Escherichia coli O157:H- str. 493-89]
gi|416800873|ref|ZP_11885051.1| DNA primase [Escherichia coli O157:H- str. H 2687]
gi|416811502|ref|ZP_11889859.1| DNA primase [Escherichia coli O55:H7 str. 3256-97]
gi|416822010|ref|ZP_11894517.1| DNA primase [Escherichia coli O55:H7 str. USDA 5905]
gi|416832394|ref|ZP_11899613.1| DNA primase [Escherichia coli O157:H7 str. LSU-61]
gi|417132809|ref|ZP_11977594.1| DNA primase [Escherichia coli 5.0588]
gi|417143417|ref|ZP_11985645.1| DNA primase [Escherichia coli 97.0259]
gi|417146954|ref|ZP_11987801.1| DNA primase [Escherichia coli 1.2264]
gi|417156831|ref|ZP_11994455.1| DNA primase [Escherichia coli 96.0497]
gi|417173536|ref|ZP_12003332.1| DNA primase [Escherichia coli 3.2608]
gi|417185948|ref|ZP_12011091.1| DNA primase [Escherichia coli 93.0624]
gi|417223366|ref|ZP_12026806.1| DNA primase [Escherichia coli 96.154]
gi|417228317|ref|ZP_12030075.1| DNA primase [Escherichia coli 5.0959]
gi|417245239|ref|ZP_12038978.1| DNA primase [Escherichia coli 9.0111]
gi|417249806|ref|ZP_12041590.1| DNA primase [Escherichia coli 4.0967]
gi|417260192|ref|ZP_12047707.1| DNA primase [Escherichia coli 2.3916]
gi|417267757|ref|ZP_12055118.1| DNA primase [Escherichia coli 3.3884]
gi|417272523|ref|ZP_12059872.1| DNA primase [Escherichia coli 2.4168]
gi|417279920|ref|ZP_12067224.1| DNA primase [Escherichia coli 3.2303]
gi|417291969|ref|ZP_12079250.1| DNA primase [Escherichia coli B41]
gi|417309597|ref|ZP_12096429.1| DNA primase [Escherichia coli PCN033]
gi|417582678|ref|ZP_12233479.1| DNA primase [Escherichia coli STEC_B2F1]
gi|417588179|ref|ZP_12238943.1| DNA primase [Escherichia coli STEC_C165-02]
gi|417598467|ref|ZP_12249096.1| DNA primase [Escherichia coli 3030-1]
gi|417603875|ref|ZP_12254441.1| DNA primase [Escherichia coli STEC_94C]
gi|417619659|ref|ZP_12270067.1| DNA primase [Escherichia coli G58-1]
gi|417625112|ref|ZP_12275406.1| DNA primase [Escherichia coli STEC_H.1.8]
gi|417636142|ref|ZP_12286352.1| DNA primase [Escherichia coli STEC_S1191]
gi|417640957|ref|ZP_12291093.1| DNA primase [Escherichia coli TX1999]
gi|417668548|ref|ZP_12318089.1| DNA primase [Escherichia coli STEC_O31]
gi|417703581|ref|ZP_12352685.1| DNA primase [Shigella flexneri K-218]
gi|417714159|ref|ZP_12363118.1| DNA primase [Shigella flexneri K-272]
gi|417718844|ref|ZP_12367737.1| DNA primase [Shigella flexneri K-227]
gi|417724767|ref|ZP_12373564.1| DNA primase [Shigella flexneri K-304]
gi|417730014|ref|ZP_12378705.1| DNA primase [Shigella flexneri K-671]
gi|417734897|ref|ZP_12383544.1| DNA primase [Shigella flexneri 2747-71]
gi|417739939|ref|ZP_12388513.1| DNA primase [Shigella flexneri 4343-70]
gi|417744967|ref|ZP_12393489.1| DNA primase [Shigella flexneri 2930-71]
gi|417806705|ref|ZP_12453638.1| DNA primase [Escherichia coli O104:H4 str. LB226692]
gi|417829544|ref|ZP_12476089.1| DNA primase [Shigella flexneri J1713]
gi|417834449|ref|ZP_12480891.1| DNA primase [Escherichia coli O104:H4 str. 01-09591]
gi|417865879|ref|ZP_12510922.1| dnaG [Escherichia coli O104:H4 str. C227-11]
gi|417946934|ref|ZP_12590140.1| DNA primase [Escherichia coli XH140A]
gi|417977598|ref|ZP_12618380.1| DNA primase [Escherichia coli XH001]
gi|418041040|ref|ZP_12679268.1| DNA primase [Escherichia coli W26]
gi|418258498|ref|ZP_12881737.1| DNA primase [Shigella flexneri 6603-63]
gi|418268469|ref|ZP_12887189.1| DNA primase [Shigella sonnei str. Moseley]
gi|418304682|ref|ZP_12916476.1| DNA primase [Escherichia coli UMNF18]
gi|418943945|ref|ZP_13497074.1| DNA primase [Escherichia coli O157:H43 str. T22]
gi|418956551|ref|ZP_13508476.1| DNA primase [Escherichia coli J53]
gi|419047282|ref|ZP_13594216.1| DNA primase [Escherichia coli DEC3A]
gi|419052838|ref|ZP_13599705.1| DNA primase [Escherichia coli DEC3B]
gi|419058832|ref|ZP_13605634.1| DNA primase [Escherichia coli DEC3C]
gi|419064332|ref|ZP_13611054.1| DNA primase [Escherichia coli DEC3D]
gi|419071281|ref|ZP_13616894.1| DNA primase [Escherichia coli DEC3E]
gi|419077037|ref|ZP_13622540.1| DNA primase [Escherichia coli DEC3F]
gi|419082308|ref|ZP_13627754.1| DNA primase [Escherichia coli DEC4A]
gi|419088141|ref|ZP_13633493.1| DNA primase [Escherichia coli DEC4B]
gi|419093940|ref|ZP_13639222.1| DNA primase [Escherichia coli DEC4C]
gi|419099690|ref|ZP_13644883.1| DNA primase [Escherichia coli DEC4D]
gi|419105686|ref|ZP_13650811.1| DNA primase [Escherichia coli DEC4E]
gi|419111107|ref|ZP_13656160.1| DNA primase [Escherichia coli DEC4F]
gi|419116611|ref|ZP_13661623.1| DNA primase [Escherichia coli DEC5A]
gi|419122328|ref|ZP_13667271.1| DNA primase [Escherichia coli DEC5B]
gi|419127917|ref|ZP_13672792.1| DNA primase [Escherichia coli DEC5C]
gi|419133173|ref|ZP_13678002.1| DNA primase [Escherichia coli DEC5D]
gi|419138328|ref|ZP_13683119.1| DNA primase [Escherichia coli DEC5E]
gi|419144137|ref|ZP_13688869.1| DNA primase [Escherichia coli DEC6A]
gi|419150020|ref|ZP_13694669.1| DNA primase [Escherichia coli DEC6B]
gi|419155530|ref|ZP_13700087.1| DNA primase [Escherichia coli DEC6C]
gi|419160881|ref|ZP_13705380.1| DNA primase [Escherichia coli DEC6D]
gi|419165931|ref|ZP_13710385.1| DNA primase [Escherichia coli DEC6E]
gi|419171897|ref|ZP_13715778.1| DNA primase [Escherichia coli DEC7A]
gi|419176824|ref|ZP_13720636.1| DNA primase [Escherichia coli DEC7B]
gi|419182456|ref|ZP_13726067.1| DNA primase [Escherichia coli DEC7C]
gi|419188079|ref|ZP_13731586.1| DNA primase [Escherichia coli DEC7D]
gi|419193204|ref|ZP_13736652.1| DNA primase [Escherichia coli DEC7E]
gi|419279697|ref|ZP_13821940.1| DNA primase [Escherichia coli DEC10E]
gi|419291223|ref|ZP_13833310.1| DNA primase [Escherichia coli DEC11A]
gi|419296450|ref|ZP_13838491.1| DNA primase [Escherichia coli DEC11B]
gi|419301977|ref|ZP_13843972.1| DNA primase [Escherichia coli DEC11C]
gi|419318477|ref|ZP_13860277.1| DNA primase [Escherichia coli DEC12A]
gi|419324744|ref|ZP_13866433.1| DNA primase [Escherichia coli DEC12B]
gi|419330677|ref|ZP_13872275.1| DNA primase [Escherichia coli DEC12C]
gi|419336185|ref|ZP_13877705.1| DNA primase [Escherichia coli DEC12D]
gi|419341583|ref|ZP_13883041.1| DNA primase [Escherichia coli DEC12E]
gi|419371635|ref|ZP_13912745.1| DNA primase [Escherichia coli DEC14A]
gi|419377127|ref|ZP_13918148.1| DNA primase [Escherichia coli DEC14B]
gi|419382463|ref|ZP_13923407.1| DNA primase [Escherichia coli DEC14C]
gi|419387753|ref|ZP_13928624.1| DNA primase [Escherichia coli DEC14D]
gi|419701911|ref|ZP_14229509.1| DNA primase [Escherichia coli SCI-07]
gi|419805812|ref|ZP_14330938.1| DNA primase [Escherichia coli AI27]
gi|419812043|ref|ZP_14336913.1| DNA primase [Escherichia coli O32:H37 str. P4]
gi|419871027|ref|ZP_14393091.1| DNA primase [Escherichia coli O103:H2 str. CVM9450]
gi|419919742|ref|ZP_14437883.1| DNA primase [Escherichia coli KD2]
gi|419923926|ref|ZP_14441825.1| DNA primase [Escherichia coli 541-15]
gi|419927500|ref|ZP_14445236.1| DNA primase [Escherichia coli 541-1]
gi|419934996|ref|ZP_14452084.1| DNA primase [Escherichia coli 576-1]
gi|419939446|ref|ZP_14456237.1| DNA primase [Escherichia coli 75]
gi|419948071|ref|ZP_14464377.1| DNA primase [Escherichia coli CUMT8]
gi|420271509|ref|ZP_14773862.1| DNA primase [Escherichia coli PA22]
gi|420277109|ref|ZP_14779390.1| DNA primase [Escherichia coli PA40]
gi|420282316|ref|ZP_14784549.1| DNA primase [Escherichia coli TW06591]
gi|420288529|ref|ZP_14790713.1| DNA primase [Escherichia coli TW10246]
gi|420294178|ref|ZP_14796292.1| DNA primase [Escherichia coli TW11039]
gi|420300032|ref|ZP_14802077.1| DNA primase [Escherichia coli TW09109]
gi|420306089|ref|ZP_14808078.1| DNA primase [Escherichia coli TW10119]
gi|420311397|ref|ZP_14813326.1| DNA primase [Escherichia coli EC1738]
gi|420316977|ref|ZP_14818850.1| DNA primase [Escherichia coli EC1734]
gi|420326913|ref|ZP_14828660.1| DNA primase [Shigella flexneri CCH060]
gi|420337729|ref|ZP_14839291.1| DNA primase [Shigella flexneri K-315]
gi|420343454|ref|ZP_14844919.1| DNA primase [Shigella flexneri K-404]
gi|420353804|ref|ZP_14854908.1| DNA primase [Shigella boydii 4444-74]
gi|420360399|ref|ZP_14861357.1| DNA primase [Shigella sonnei 3226-85]
gi|420365131|ref|ZP_14866000.1| DNA primase [Shigella sonnei 4822-66]
gi|420381795|ref|ZP_14881235.1| DNA primase [Shigella dysenteriae 225-75]
gi|420387308|ref|ZP_14886650.1| DNA primase [Escherichia coli EPECa12]
gi|420393172|ref|ZP_14892418.1| DNA primase [Escherichia coli EPEC C342-62]
gi|421684192|ref|ZP_16123981.1| DNA primase [Shigella flexneri 1485-80]
gi|421774972|ref|ZP_16211583.1| DNA primase [Escherichia coli AD30]
gi|421814098|ref|ZP_16249806.1| DNA primase [Escherichia coli 8.0416]
gi|421819894|ref|ZP_16255382.1| DNA primase [Escherichia coli 10.0821]
gi|421825905|ref|ZP_16261259.1| DNA primase [Escherichia coli FRIK920]
gi|421832621|ref|ZP_16267903.1| DNA primase [Escherichia coli PA7]
gi|422353818|ref|ZP_16434567.1| DNA primase [Escherichia coli MS 117-3]
gi|422379902|ref|ZP_16460083.1| DNA primase [Escherichia coli MS 57-2]
gi|422760536|ref|ZP_16814296.1| DNA primase [Escherichia coli E1167]
gi|422767436|ref|ZP_16821162.1| DNA primase [Escherichia coli E1520]
gi|422775685|ref|ZP_16829340.1| DNA primase [Escherichia coli H120]
gi|422787385|ref|ZP_16840123.1| DNA primase [Escherichia coli H489]
gi|422791635|ref|ZP_16844337.1| DNA primase [Escherichia coli TA007]
gi|422818192|ref|ZP_16866405.1| DNA primase [Escherichia coli M919]
gi|422827523|ref|ZP_16875697.1| DNA primase [Escherichia coli B093]
gi|422833578|ref|ZP_16881644.1| DNA primase [Escherichia coli E101]
gi|422959835|ref|ZP_16971470.1| DNA primase [Escherichia coli H494]
gi|422989270|ref|ZP_16980042.1| DNA primase [Escherichia coli O104:H4 str. C227-11]
gi|422996165|ref|ZP_16986928.1| DNA primase [Escherichia coli O104:H4 str. C236-11]
gi|423001315|ref|ZP_16992068.1| DNA primase [Escherichia coli O104:H4 str. 09-7901]
gi|423004974|ref|ZP_16995719.1| DNA primase [Escherichia coli O104:H4 str. 04-8351]
gi|423011479|ref|ZP_17002212.1| DNA primase [Escherichia coli O104:H4 str. 11-3677]
gi|423020709|ref|ZP_17011416.1| DNA primase [Escherichia coli O104:H4 str. 11-4404]
gi|423025871|ref|ZP_17016566.1| DNA primase [Escherichia coli O104:H4 str. 11-4522]
gi|423031691|ref|ZP_17022377.1| DNA primase [Escherichia coli O104:H4 str. 11-4623]
gi|423034563|ref|ZP_17025241.1| DNA primase [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423039691|ref|ZP_17030360.1| DNA primase [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423046374|ref|ZP_17037033.1| DNA primase [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423054911|ref|ZP_17043717.1| DNA primase [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423056903|ref|ZP_17045702.1| DNA primase [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423707367|ref|ZP_17681747.1| DNA primase [Escherichia coli B799]
gi|423727016|ref|ZP_17700934.1| DNA primase [Escherichia coli PA31]
gi|424079222|ref|ZP_17816192.1| DNA primase [Escherichia coli FDA505]
gi|424085680|ref|ZP_17822169.1| DNA primase [Escherichia coli FDA517]
gi|424092082|ref|ZP_17828013.1| DNA primase [Escherichia coli FRIK1996]
gi|424098748|ref|ZP_17834026.1| DNA primase [Escherichia coli FRIK1985]
gi|424104963|ref|ZP_17839708.1| DNA primase [Escherichia coli FRIK1990]
gi|424111612|ref|ZP_17845844.1| DNA primase [Escherichia coli 93-001]
gi|424117549|ref|ZP_17851384.1| DNA primase [Escherichia coli PA3]
gi|424123738|ref|ZP_17857047.1| DNA primase [Escherichia coli PA5]
gi|424129889|ref|ZP_17862793.1| DNA primase [Escherichia coli PA9]
gi|424136214|ref|ZP_17868663.1| DNA primase [Escherichia coli PA10]
gi|424142761|ref|ZP_17874630.1| DNA primase [Escherichia coli PA14]
gi|424149164|ref|ZP_17880536.1| DNA primase [Escherichia coli PA15]
gi|424154999|ref|ZP_17885932.1| DNA primase [Escherichia coli PA24]
gi|424253615|ref|ZP_17891495.1| DNA primase [Escherichia coli PA25]
gi|424332093|ref|ZP_17897401.1| DNA primase [Escherichia coli PA28]
gi|424451448|ref|ZP_17903120.1| DNA primase [Escherichia coli PA32]
gi|424457639|ref|ZP_17908751.1| DNA primase [Escherichia coli PA33]
gi|424464094|ref|ZP_17914475.1| DNA primase [Escherichia coli PA39]
gi|424470400|ref|ZP_17920214.1| DNA primase [Escherichia coli PA41]
gi|424476911|ref|ZP_17926225.1| DNA primase [Escherichia coli PA42]
gi|424482668|ref|ZP_17931644.1| DNA primase [Escherichia coli TW07945]
gi|424488850|ref|ZP_17937397.1| DNA primase [Escherichia coli TW09098]
gi|424495475|ref|ZP_17943111.1| DNA primase [Escherichia coli TW09195]
gi|424502200|ref|ZP_17949088.1| DNA primase [Escherichia coli EC4203]
gi|424508452|ref|ZP_17954838.1| DNA primase [Escherichia coli EC4196]
gi|424515803|ref|ZP_17960441.1| DNA primase [Escherichia coli TW14313]
gi|424522006|ref|ZP_17966120.1| DNA primase [Escherichia coli TW14301]
gi|424527884|ref|ZP_17971597.1| DNA primase [Escherichia coli EC4421]
gi|424534029|ref|ZP_17977374.1| DNA primase [Escherichia coli EC4422]
gi|424540085|ref|ZP_17983025.1| DNA primase [Escherichia coli EC4013]
gi|424546210|ref|ZP_17988581.1| DNA primase [Escherichia coli EC4402]
gi|424552433|ref|ZP_17994275.1| DNA primase [Escherichia coli EC4439]
gi|424558607|ref|ZP_18000015.1| DNA primase [Escherichia coli EC4436]
gi|424564946|ref|ZP_18005946.1| DNA primase [Escherichia coli EC4437]
gi|424571088|ref|ZP_18011634.1| DNA primase [Escherichia coli EC4448]
gi|424577246|ref|ZP_18017297.1| DNA primase [Escherichia coli EC1845]
gi|424583068|ref|ZP_18022711.1| DNA primase [Escherichia coli EC1863]
gi|424839338|ref|ZP_18263975.1| DNA primase [Shigella flexneri 5a str. M90T]
gi|425099735|ref|ZP_18502465.1| DNA primase [Escherichia coli 3.4870]
gi|425105835|ref|ZP_18508150.1| DNA primase [Escherichia coli 5.2239]
gi|425111848|ref|ZP_18513766.1| DNA primase [Escherichia coli 6.0172]
gi|425116606|ref|ZP_18518396.1| DNA primase [Escherichia coli 8.0566]
gi|425121362|ref|ZP_18523048.1| DNA primase [Escherichia coli 8.0569]
gi|425127770|ref|ZP_18528935.1| DNA primase [Escherichia coli 8.0586]
gi|425133510|ref|ZP_18534356.1| DNA primase [Escherichia coli 8.2524]
gi|425140092|ref|ZP_18540470.1| DNA primase [Escherichia coli 10.0833]
gi|425145801|ref|ZP_18545794.1| DNA primase [Escherichia coli 10.0869]
gi|425151919|ref|ZP_18551530.1| DNA primase [Escherichia coli 88.0221]
gi|425157790|ref|ZP_18557050.1| DNA primase [Escherichia coli PA34]
gi|425164141|ref|ZP_18563025.1| DNA primase [Escherichia coli FDA506]
gi|425169884|ref|ZP_18568355.1| DNA primase [Escherichia coli FDA507]
gi|425175944|ref|ZP_18574061.1| DNA primase [Escherichia coli FDA504]
gi|425181985|ref|ZP_18579677.1| DNA primase [Escherichia coli FRIK1999]
gi|425188251|ref|ZP_18585521.1| DNA primase [Escherichia coli FRIK1997]
gi|425195017|ref|ZP_18591783.1| DNA primase [Escherichia coli NE1487]
gi|425201493|ref|ZP_18597698.1| DNA primase [Escherichia coli NE037]
gi|425207878|ref|ZP_18603672.1| DNA primase [Escherichia coli FRIK2001]
gi|425213633|ref|ZP_18609031.1| DNA primase [Escherichia coli PA4]
gi|425219755|ref|ZP_18614715.1| DNA primase [Escherichia coli PA23]
gi|425226304|ref|ZP_18620768.1| DNA primase [Escherichia coli PA49]
gi|425232564|ref|ZP_18626601.1| DNA primase [Escherichia coli PA45]
gi|425238487|ref|ZP_18632204.1| DNA primase [Escherichia coli TT12B]
gi|425244724|ref|ZP_18638027.1| DNA primase [Escherichia coli MA6]
gi|425250917|ref|ZP_18643856.1| DNA primase [Escherichia coli 5905]
gi|425256699|ref|ZP_18649209.1| DNA primase [Escherichia coli CB7326]
gi|425262951|ref|ZP_18654952.1| DNA primase [Escherichia coli EC96038]
gi|425268949|ref|ZP_18660577.1| DNA primase [Escherichia coli 5412]
gi|425274248|ref|ZP_18665648.1| DNA primase [Escherichia coli TW15901]
gi|425284831|ref|ZP_18675862.1| DNA primase [Escherichia coli TW00353]
gi|425290195|ref|ZP_18681023.1| DNA primase [Escherichia coli 3006]
gi|425296402|ref|ZP_18686569.1| DNA primase [Escherichia coli PA38]
gi|425301941|ref|ZP_18691825.1| DNA primase [Escherichia coli 07798]
gi|425306851|ref|ZP_18696533.1| DNA primase [Escherichia coli N1]
gi|425313093|ref|ZP_18702269.1| DNA primase [Escherichia coli EC1735]
gi|425319076|ref|ZP_18707861.1| DNA primase [Escherichia coli EC1736]
gi|425325167|ref|ZP_18713521.1| DNA primase [Escherichia coli EC1737]
gi|425331534|ref|ZP_18719369.1| DNA primase [Escherichia coli EC1846]
gi|425337713|ref|ZP_18725067.1| DNA primase [Escherichia coli EC1847]
gi|425344024|ref|ZP_18730911.1| DNA primase [Escherichia coli EC1848]
gi|425349832|ref|ZP_18736297.1| DNA primase [Escherichia coli EC1849]
gi|425356132|ref|ZP_18742197.1| DNA primase [Escherichia coli EC1850]
gi|425362096|ref|ZP_18747740.1| DNA primase [Escherichia coli EC1856]
gi|425368312|ref|ZP_18753434.1| DNA primase [Escherichia coli EC1862]
gi|425374629|ref|ZP_18759267.1| DNA primase [Escherichia coli EC1864]
gi|425387520|ref|ZP_18771075.1| DNA primase [Escherichia coli EC1866]
gi|425394172|ref|ZP_18777277.1| DNA primase [Escherichia coli EC1868]
gi|425400312|ref|ZP_18783013.1| DNA primase [Escherichia coli EC1869]
gi|425406399|ref|ZP_18788617.1| DNA primase [Escherichia coli EC1870]
gi|425412782|ref|ZP_18794542.1| DNA primase [Escherichia coli NE098]
gi|425419100|ref|ZP_18800367.1| DNA primase [Escherichia coli FRIK523]
gi|425423936|ref|ZP_18805095.1| DNA primase [Escherichia coli 0.1288]
gi|425430370|ref|ZP_18810977.1| DNA primase [Escherichia coli 0.1304]
gi|427806263|ref|ZP_18973330.1| DNA biosynthesis; DNA primase [Escherichia coli chi7122]
gi|427810856|ref|ZP_18977921.1| DNA biosynthesis; DNA primase [Escherichia coli]
gi|428948801|ref|ZP_19021075.1| DNA primase [Escherichia coli 88.1467]
gi|428954877|ref|ZP_19026671.1| DNA primase [Escherichia coli 88.1042]
gi|428960868|ref|ZP_19032160.1| DNA primase [Escherichia coli 89.0511]
gi|428967482|ref|ZP_19038192.1| DNA primase [Escherichia coli 90.0091]
gi|428979640|ref|ZP_19049459.1| DNA primase [Escherichia coli 90.2281]
gi|428985376|ref|ZP_19054767.1| DNA primase [Escherichia coli 93.0055]
gi|428991596|ref|ZP_19060582.1| DNA primase [Escherichia coli 93.0056]
gi|428997481|ref|ZP_19066074.1| DNA primase [Escherichia coli 94.0618]
gi|429003752|ref|ZP_19071852.1| DNA primase [Escherichia coli 95.0183]
gi|429009851|ref|ZP_19077308.1| DNA primase [Escherichia coli 95.1288]
gi|429016375|ref|ZP_19083255.1| DNA primase [Escherichia coli 95.0943]
gi|429022120|ref|ZP_19088639.1| DNA primase [Escherichia coli 96.0428]
gi|429028271|ref|ZP_19094263.1| DNA primase [Escherichia coli 96.0427]
gi|429034449|ref|ZP_19099969.1| DNA primase [Escherichia coli 96.0939]
gi|429040533|ref|ZP_19105631.1| DNA primase [Escherichia coli 96.0932]
gi|429046323|ref|ZP_19111033.1| DNA primase [Escherichia coli 96.0107]
gi|429051805|ref|ZP_19116368.1| DNA primase [Escherichia coli 97.0003]
gi|429057232|ref|ZP_19121530.1| DNA primase [Escherichia coli 97.1742]
gi|429062734|ref|ZP_19126727.1| DNA primase [Escherichia coli 97.0007]
gi|429068990|ref|ZP_19132445.1| DNA primase [Escherichia coli 99.0672]
gi|429074932|ref|ZP_19138180.1| DNA primase [Escherichia coli 99.0678]
gi|429080131|ref|ZP_19143264.1| DNA primase [Escherichia coli 99.0713]
gi|429720733|ref|ZP_19255656.1| DNA primase [Escherichia coli O104:H4 str. Ec11-9450]
gi|429772633|ref|ZP_19304651.1| DNA primase [Escherichia coli O104:H4 str. 11-02030]
gi|429777584|ref|ZP_19309554.1| DNA primase [Escherichia coli O104:H4 str. 11-02033-1]
gi|429786305|ref|ZP_19318198.1| DNA primase [Escherichia coli O104:H4 str. 11-02092]
gi|429787249|ref|ZP_19319139.1| DNA primase [Escherichia coli O104:H4 str. 11-02093]
gi|429793045|ref|ZP_19324891.1| DNA primase [Escherichia coli O104:H4 str. 11-02281]
gi|429799624|ref|ZP_19331418.1| DNA primase [Escherichia coli O104:H4 str. 11-02318]
gi|429803240|ref|ZP_19334998.1| DNA primase [Escherichia coli O104:H4 str. 11-02913]
gi|429807880|ref|ZP_19339601.1| DNA primase [Escherichia coli O104:H4 str. 11-03439]
gi|429813580|ref|ZP_19345257.1| DNA primase [Escherichia coli O104:H4 str. 11-04080]
gi|429818791|ref|ZP_19350423.1| DNA primase [Escherichia coli O104:H4 str. 11-03943]
gi|429828165|ref|ZP_19359188.1| DNA primase [Escherichia coli 96.0109]
gi|429834550|ref|ZP_19364854.1| DNA primase [Escherichia coli 97.0010]
gi|429905139|ref|ZP_19371116.1| DNA primase [Escherichia coli O104:H4 str. Ec11-9990]
gi|429909275|ref|ZP_19375238.1| DNA primase [Escherichia coli O104:H4 str. Ec11-9941]
gi|429915146|ref|ZP_19381092.1| DNA primase [Escherichia coli O104:H4 str. Ec11-4984]
gi|429920193|ref|ZP_19386121.1| DNA primase [Escherichia coli O104:H4 str. Ec11-5604]
gi|429925997|ref|ZP_19391909.1| DNA primase [Escherichia coli O104:H4 str. Ec11-4986]
gi|429929933|ref|ZP_19395834.1| DNA primase [Escherichia coli O104:H4 str. Ec11-4987]
gi|429936471|ref|ZP_19402356.1| DNA primase [Escherichia coli O104:H4 str. Ec11-4988]
gi|429942151|ref|ZP_19408024.1| DNA primase [Escherichia coli O104:H4 str. Ec11-5603]
gi|429944835|ref|ZP_19410696.1| DNA primase [Escherichia coli O104:H4 str. Ec11-6006]
gi|429952391|ref|ZP_19418236.1| DNA primase [Escherichia coli O104:H4 str. Ec12-0465]
gi|429955746|ref|ZP_19421576.1| DNA primase [Escherichia coli O104:H4 str. Ec12-0466]
gi|432355072|ref|ZP_19598341.1| DNA primase [Escherichia coli KTE2]
gi|432366526|ref|ZP_19609644.1| DNA primase [Escherichia coli KTE10]
gi|432378268|ref|ZP_19621253.1| DNA primase [Escherichia coli KTE12]
gi|432403454|ref|ZP_19646199.1| DNA primase [Escherichia coli KTE26]
gi|432418593|ref|ZP_19661189.1| DNA primase [Escherichia coli KTE44]
gi|432427713|ref|ZP_19670198.1| DNA primase [Escherichia coli KTE181]
gi|432451316|ref|ZP_19693574.1| DNA primase [Escherichia coli KTE193]
gi|432462418|ref|ZP_19704552.1| DNA primase [Escherichia coli KTE204]
gi|432477411|ref|ZP_19719401.1| DNA primase [Escherichia coli KTE208]
gi|432482403|ref|ZP_19724354.1| DNA primase [Escherichia coli KTE210]
gi|432486836|ref|ZP_19728746.1| DNA primase [Escherichia coli KTE212]
gi|432490859|ref|ZP_19732723.1| DNA primase [Escherichia coli KTE213]
gi|432519273|ref|ZP_19756453.1| DNA primase [Escherichia coli KTE228]
gi|432527901|ref|ZP_19764982.1| DNA primase [Escherichia coli KTE233]
gi|432535418|ref|ZP_19772383.1| DNA primase [Escherichia coli KTE234]
gi|432539421|ref|ZP_19776317.1| DNA primase [Escherichia coli KTE235]
gi|432544821|ref|ZP_19781656.1| DNA primase [Escherichia coli KTE236]
gi|432550303|ref|ZP_19787063.1| DNA primase [Escherichia coli KTE237]
gi|432555148|ref|ZP_19791867.1| DNA primase [Escherichia coli KTE47]
gi|432565434|ref|ZP_19801999.1| DNA primase [Escherichia coli KTE51]
gi|432577303|ref|ZP_19813754.1| DNA primase [Escherichia coli KTE56]
gi|432603915|ref|ZP_19840146.1| DNA primase [Escherichia coli KTE66]
gi|432623396|ref|ZP_19859416.1| DNA primase [Escherichia coli KTE76]
gi|432628704|ref|ZP_19864676.1| DNA primase [Escherichia coli KTE77]
gi|432632951|ref|ZP_19868872.1| DNA primase [Escherichia coli KTE80]
gi|432638276|ref|ZP_19874143.1| DNA primase [Escherichia coli KTE81]
gi|432642640|ref|ZP_19878467.1| DNA primase [Escherichia coli KTE83]
gi|432662279|ref|ZP_19897917.1| DNA primase [Escherichia coli KTE111]
gi|432667628|ref|ZP_19903203.1| DNA primase [Escherichia coli KTE116]
gi|432672159|ref|ZP_19907684.1| DNA primase [Escherichia coli KTE119]
gi|432676187|ref|ZP_19911639.1| DNA primase [Escherichia coli KTE142]
gi|432686890|ref|ZP_19922183.1| DNA primase [Escherichia coli KTE156]
gi|432688259|ref|ZP_19923534.1| DNA primase [Escherichia coli KTE161]
gi|432705813|ref|ZP_19940909.1| DNA primase [Escherichia coli KTE171]
gi|432720213|ref|ZP_19955178.1| DNA primase [Escherichia coli KTE9]
gi|432733840|ref|ZP_19968665.1| DNA primase [Escherichia coli KTE45]
gi|432738555|ref|ZP_19973309.1| DNA primase [Escherichia coli KTE42]
gi|432751544|ref|ZP_19986127.1| DNA primase [Escherichia coli KTE29]
gi|432760926|ref|ZP_19995416.1| DNA primase [Escherichia coli KTE46]
gi|432766434|ref|ZP_20000851.1| DNA primase [Escherichia coli KTE48]
gi|432767446|ref|ZP_20001840.1| DNA primase [Escherichia coli KTE50]
gi|432776157|ref|ZP_20010420.1| DNA primase [Escherichia coli KTE54]
gi|432794298|ref|ZP_20028380.1| DNA primase [Escherichia coli KTE78]
gi|432795815|ref|ZP_20029856.1| DNA primase [Escherichia coli KTE79]
gi|432807332|ref|ZP_20041247.1| DNA primase [Escherichia coli KTE91]
gi|432810780|ref|ZP_20044658.1| DNA primase [Escherichia coli KTE101]
gi|432816851|ref|ZP_20050612.1| DNA primase [Escherichia coli KTE115]
gi|432828706|ref|ZP_20062324.1| DNA primase [Escherichia coli KTE135]
gi|432836028|ref|ZP_20069562.1| DNA primase [Escherichia coli KTE136]
gi|432840885|ref|ZP_20074345.1| DNA primase [Escherichia coli KTE140]
gi|432854222|ref|ZP_20082767.1| DNA primase [Escherichia coli KTE144]
gi|432864988|ref|ZP_20088236.1| DNA primase [Escherichia coli KTE146]
gi|432876994|ref|ZP_20094863.1| DNA primase [Escherichia coli KTE154]
gi|432888380|ref|ZP_20102132.1| DNA primase [Escherichia coli KTE158]
gi|432900310|ref|ZP_20110732.1| DNA primase [Escherichia coli KTE192]
gi|432914568|ref|ZP_20119984.1| DNA primase [Escherichia coli KTE190]
gi|432936258|ref|ZP_20135392.1| DNA primase [Escherichia coli KTE184]
gi|432949140|ref|ZP_20144063.1| DNA primase [Escherichia coli KTE196]
gi|432956812|ref|ZP_20148432.1| DNA primase [Escherichia coli KTE197]
gi|432963532|ref|ZP_20152951.1| DNA primase [Escherichia coli KTE202]
gi|432969137|ref|ZP_20158049.1| DNA primase [Escherichia coli KTE203]
gi|433020206|ref|ZP_20208372.1| DNA primase [Escherichia coli KTE105]
gi|433029997|ref|ZP_20217849.1| DNA primase [Escherichia coli KTE109]
gi|433034963|ref|ZP_20222663.1| DNA primase [Escherichia coli KTE112]
gi|433044618|ref|ZP_20232105.1| DNA primase [Escherichia coli KTE117]
gi|433049507|ref|ZP_20236845.1| DNA primase [Escherichia coli KTE120]
gi|433054706|ref|ZP_20241873.1| DNA primase [Escherichia coli KTE122]
gi|433064528|ref|ZP_20251439.1| DNA primase [Escherichia coli KTE125]
gi|433069394|ref|ZP_20256169.1| DNA primase [Escherichia coli KTE128]
gi|433093455|ref|ZP_20279713.1| DNA primase [Escherichia coli KTE138]
gi|433121637|ref|ZP_20307300.1| DNA primase [Escherichia coli KTE157]
gi|433131629|ref|ZP_20317059.1| DNA primase [Escherichia coli KTE163]
gi|433136282|ref|ZP_20321619.1| DNA primase [Escherichia coli KTE166]
gi|433160186|ref|ZP_20345013.1| DNA primase [Escherichia coli KTE177]
gi|433174958|ref|ZP_20359473.1| DNA primase [Escherichia coli KTE232]
gi|433179903|ref|ZP_20364290.1| DNA primase [Escherichia coli KTE82]
gi|433195116|ref|ZP_20379095.1| DNA primase [Escherichia coli KTE90]
gi|433204784|ref|ZP_20388540.1| DNA primase [Escherichia coli KTE95]
gi|442593610|ref|ZP_21011548.1| DNA primase [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|442597133|ref|ZP_21014929.1| DNA primase [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|443619133|ref|YP_007382989.1| DNA primase [Escherichia coli APEC O78]
gi|444926687|ref|ZP_21245963.1| DNA primase [Escherichia coli 09BKT078844]
gi|444932374|ref|ZP_21251396.1| DNA primase [Escherichia coli 99.0814]
gi|444937799|ref|ZP_21256558.1| DNA primase [Escherichia coli 99.0815]
gi|444943392|ref|ZP_21261895.1| DNA primase [Escherichia coli 99.0816]
gi|444948845|ref|ZP_21267150.1| DNA primase [Escherichia coli 99.0839]
gi|444954499|ref|ZP_21272578.1| DNA primase [Escherichia coli 99.0848]
gi|444959970|ref|ZP_21277807.1| DNA primase [Escherichia coli 99.1753]
gi|444965152|ref|ZP_21282735.1| DNA primase [Escherichia coli 99.1775]
gi|444971148|ref|ZP_21288501.1| DNA primase [Escherichia coli 99.1793]
gi|444976401|ref|ZP_21293506.1| DNA primase [Escherichia coli 99.1805]
gi|444981841|ref|ZP_21298745.1| DNA primase [Escherichia coli ATCC 700728]
gi|444987199|ref|ZP_21303974.1| DNA primase [Escherichia coli PA11]
gi|444992510|ref|ZP_21309150.1| DNA primase [Escherichia coli PA19]
gi|444997796|ref|ZP_21314291.1| DNA primase [Escherichia coli PA13]
gi|445003391|ref|ZP_21319776.1| DNA primase [Escherichia coli PA2]
gi|445008762|ref|ZP_21324999.1| DNA primase [Escherichia coli PA47]
gi|445013925|ref|ZP_21330028.1| DNA primase [Escherichia coli PA48]
gi|445019805|ref|ZP_21335767.1| DNA primase [Escherichia coli PA8]
gi|445025209|ref|ZP_21341029.1| DNA primase [Escherichia coli 7.1982]
gi|445030630|ref|ZP_21346299.1| DNA primase [Escherichia coli 99.1781]
gi|445036064|ref|ZP_21351589.1| DNA primase [Escherichia coli 99.1762]
gi|445041688|ref|ZP_21357056.1| DNA primase [Escherichia coli PA35]
gi|445046949|ref|ZP_21362195.1| DNA primase [Escherichia coli 3.4880]
gi|445052465|ref|ZP_21367492.1| DNA primase [Escherichia coli 95.0083]
gi|445058161|ref|ZP_21373018.1| DNA primase [Escherichia coli 99.0670]
gi|450222263|ref|ZP_21896786.1| DNA primase [Escherichia coli O08]
gi|450250148|ref|ZP_21901543.1| DNA primase [Escherichia coli S17]
gi|452968079|ref|ZP_21966306.1| DNA primase [Escherichia coli O157:H7 str. EC4009]
gi|78101809|sp|P0ABS6.1|PRIM_ECO57 RecName: Full=DNA primase
gi|78101810|sp|P0ABS5.1|PRIM_ECOLI RecName: Full=DNA primase
gi|78101811|sp|P0ABS7.1|PRIM_SHIFL RecName: Full=DNA primase
gi|147755|gb|AAA24600.1| DNA primase [Escherichia coli]
gi|882589|gb|AAA89146.1| CG Site No. 847; alternate gen name dnaP, parB [Escherichia coli
str. K-12 substr. MG1655]
gi|1617301|emb|CAA23531.1| DNA primase [Escherichia coli]
gi|1789447|gb|AAC76102.1| DNA primase [Escherichia coli str. K-12 substr. MG1655]
gi|13363422|dbj|BAB37372.1| DNA primase [Escherichia coli O157:H7 str. Sakai]
gi|24053530|gb|AAN44583.1| DNA biosynthesis; DNA primase [Shigella flexneri 2a str. 301]
gi|30042671|gb|AAP18395.1| DNA biosynthesis; DNA primase [Shigella flexneri 2a str. 2457T]
gi|73857078|gb|AAZ89785.1| DNA primase [Shigella sonnei Ss046]
gi|85675867|dbj|BAE77117.1| DNA primase [Escherichia coli str. K12 substr. W3110]
gi|110344902|gb|ABG71139.1| DNA primase [Escherichia coli 536]
gi|157078595|gb|ABV18303.1| DNA primase [Escherichia coli E24377A]
gi|169890444|gb|ACB04151.1| DNA primase [Escherichia coli str. K-12 substr. DH10B]
gi|170518602|gb|ACB16780.1| DNA primase [Escherichia coli SMS-3-5]
gi|187770989|gb|EDU34833.1| DNA primase [Escherichia coli O157:H7 str. EC4196]
gi|189001079|gb|EDU70065.1| DNA primase [Escherichia coli O157:H7 str. EC4076]
gi|189358475|gb|EDU76894.1| DNA primase [Escherichia coli O157:H7 str. EC4401]
gi|189361484|gb|EDU79903.1| DNA primase [Escherichia coli O157:H7 str. EC4486]
gi|189374115|gb|EDU92531.1| DNA primase [Escherichia coli O157:H7 str. EC869]
gi|189379826|gb|EDU98242.1| DNA primase [Escherichia coli O157:H7 str. EC508]
gi|192959203|gb|EDV89638.1| DNA primase [Escherichia coli E110019]
gi|194414185|gb|EDX30460.1| DNA primase [Escherichia coli B171]
gi|194421248|gb|EDX37269.1| DNA primase [Escherichia coli 101-1]
gi|208733203|gb|EDZ81890.1| DNA primase [Escherichia coli O157:H7 str. EC4045]
gi|208740755|gb|EDZ88437.1| DNA primase [Escherichia coli O157:H7 str. EC4042]
gi|209157960|gb|ACI35393.1| DNA primase [Escherichia coli O157:H7 str. EC4115]
gi|209759238|gb|ACI77931.1| DNA primase [Escherichia coli]
gi|209759240|gb|ACI77932.1| DNA primase [Escherichia coli]
gi|209759242|gb|ACI77933.1| DNA primase [Escherichia coli]
gi|209759244|gb|ACI77934.1| DNA primase [Escherichia coli]
gi|209759246|gb|ACI77935.1| DNA primase [Escherichia coli]
gi|209913797|dbj|BAG78871.1| DNA primase [Escherichia coli SE11]
gi|217319721|gb|EEC28146.1| DNA primase [Escherichia coli O157:H7 str. TW14588]
gi|218353503|emb|CAU99621.1| DNA primase [Escherichia coli 55989]
gi|218362404|emb|CAR00028.1| DNA primase [Escherichia coli IAI1]
gi|218428935|emb|CAR09738.1| DNA primase [Escherichia coli ED1a]
gi|218433788|emb|CAR14705.1| DNA primase [Escherichia coli UMN026]
gi|222034798|emb|CAP77540.1| DNA primase [Escherichia coli LF82]
gi|226839859|gb|EEH71880.1| DNA primase [Escherichia sp. 1_1_43]
gi|238860841|gb|ACR62839.1| DNA primase [Escherichia coli BW2952]
gi|242378616|emb|CAQ33403.1| DNA primase, subunit of primosome [Escherichia coli BL21(DE3)]
gi|253323142|gb|ACT27744.1| DNA primase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253974914|gb|ACT40585.1| DNA primase [Escherichia coli B str. REL606]
gi|253979070|gb|ACT44740.1| DNA primase [Escherichia coli BL21(DE3)]
gi|254594417|gb|ACT73778.1| DNA primase [Escherichia coli O157:H7 str. TW14359]
gi|257760967|dbj|BAI32464.1| DNA primase DnaG [Escherichia coli O103:H2 str. 12009]
gi|260447899|gb|ACX38321.1| DNA primase [Escherichia coli DH1]
gi|281602455|gb|ADA75439.1| DNA primase [Shigella flexneri 2002017]
gi|290764318|gb|ADD58279.1| DNA primase [Escherichia coli O55:H7 str. CB9615]
gi|291426685|gb|EFE99717.1| DNA primase [Escherichia coli FVEC1412]
gi|291469214|gb|EFF11705.1| DNA primase [Escherichia coli B354]
gi|298277560|gb|EFI19076.1| DNA primase [Escherichia coli FVEC1302]
gi|299881585|gb|EFI89796.1| DNA primase [Escherichia coli MS 196-1]
gi|300314895|gb|EFJ64679.1| DNA primase [Escherichia coli MS 175-1]
gi|300355151|gb|EFJ71021.1| DNA primase [Escherichia coli MS 198-1]
gi|300397875|gb|EFJ81413.1| DNA primase [Escherichia coli MS 69-1]
gi|300402391|gb|EFJ85929.1| DNA primase [Escherichia coli MS 84-1]
gi|300415351|gb|EFJ98661.1| DNA primase [Escherichia coli MS 115-1]
gi|300419998|gb|EFK03309.1| DNA primase [Escherichia coli MS 182-1]
gi|300449960|gb|EFK13580.1| DNA primase [Escherichia coli MS 116-1]
gi|300457484|gb|EFK20977.1| DNA primase [Escherichia coli MS 21-1]
gi|300460375|gb|EFK23868.1| DNA primase [Escherichia coli MS 187-1]
gi|300525799|gb|EFK46868.1| DNA primase [Escherichia coli MS 119-7]
gi|300528618|gb|EFK49680.1| DNA primase [Escherichia coli MS 107-1]
gi|300842873|gb|EFK70633.1| DNA primase [Escherichia coli MS 124-1]
gi|300847631|gb|EFK75391.1| DNA primase [Escherichia coli MS 78-1]
gi|301076917|gb|EFK91723.1| DNA primase [Escherichia coli MS 146-1]
gi|306909204|gb|EFN39699.1| DNA primase [Escherichia coli W]
gi|308122588|gb|EFO59850.1| DNA primase [Escherichia coli MS 145-7]
gi|309703497|emb|CBJ02837.1| DNA primase [Escherichia coli ETEC H10407]
gi|312947637|gb|ADR28464.1| DNA primase [Escherichia coli O83:H1 str. NRG 857C]
gi|313648182|gb|EFS12628.1| DNA primase [Shigella flexneri 2a str. 2457T]
gi|315062374|gb|ADT76701.1| DNA primase [Escherichia coli W]
gi|315137659|dbj|BAJ44818.1| DNA primase [Escherichia coli DH1]
gi|315256979|gb|EFU36947.1| DNA primase [Escherichia coli MS 85-1]
gi|315617139|gb|EFU97748.1| DNA primase [Escherichia coli 3431]
gi|320176469|gb|EFW51519.1| DNA primase [Shigella dysenteriae CDC 74-1112]
gi|320182889|gb|EFW57763.1| DNA primase [Shigella flexneri CDC 796-83]
gi|320189417|gb|EFW64076.1| DNA primase [Escherichia coli O157:H7 str. EC1212]
gi|320640140|gb|EFX09712.1| DNA primase [Escherichia coli O157:H7 str. G5101]
gi|320645438|gb|EFX14447.1| DNA primase [Escherichia coli O157:H- str. 493-89]
gi|320650749|gb|EFX19206.1| DNA primase [Escherichia coli O157:H- str. H 2687]
gi|320656127|gb|EFX24039.1| DNA primase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320661817|gb|EFX29225.1| DNA primase [Escherichia coli O55:H7 str. USDA 5905]
gi|320666968|gb|EFX33944.1| DNA primase [Escherichia coli O157:H7 str. LSU-61]
gi|323163116|gb|EFZ48949.1| DNA primase [Escherichia coli E128010]
gi|323168089|gb|EFZ53776.1| DNA primase [Shigella sonnei 53G]
gi|323173689|gb|EFZ59318.1| DNA primase [Escherichia coli LT-68]
gi|323183649|gb|EFZ69046.1| DNA primase [Escherichia coli OK1357]
gi|323377038|gb|ADX49306.1| DNA primase [Escherichia coli KO11FL]
gi|323935932|gb|EGB32227.1| DNA primase [Escherichia coli E1520]
gi|323946864|gb|EGB42882.1| DNA primase [Escherichia coli H120]
gi|323960999|gb|EGB56616.1| DNA primase [Escherichia coli H489]
gi|323971811|gb|EGB67036.1| DNA primase [Escherichia coli TA007]
gi|324008870|gb|EGB78089.1| DNA primase [Escherichia coli MS 57-2]
gi|324018216|gb|EGB87435.1| DNA primase [Escherichia coli MS 117-3]
gi|324119674|gb|EGC13555.1| DNA primase [Escherichia coli E1167]
gi|326337769|gb|EGD61603.1| DNA primase [Escherichia coli O157:H7 str. 1125]
gi|326347334|gb|EGD71059.1| DNA primase [Escherichia coli O157:H7 str. 1044]
gi|331037235|gb|EGI09459.1| DNA primase [Escherichia coli H736]
gi|331058610|gb|EGI30591.1| DNA primase [Escherichia coli TA143]
gi|331062823|gb|EGI34737.1| DNA primase [Escherichia coli TA271]
gi|331068699|gb|EGI40094.1| DNA primase [Escherichia coli TA280]
gi|331073207|gb|EGI44530.1| DNA primase [Escherichia coli H591]
gi|332102468|gb|EGJ05814.1| DNA primase [Shigella sp. D9]
gi|332345020|gb|AEE58354.1| DNA primase DnaG [Escherichia coli UMNK88]
gi|332752739|gb|EGJ83124.1| DNA primase [Shigella flexneri K-671]
gi|332753123|gb|EGJ83507.1| DNA primase [Shigella flexneri 4343-70]
gi|332754328|gb|EGJ84694.1| DNA primase [Shigella flexneri 2747-71]
gi|332765315|gb|EGJ95539.1| DNA primase [Shigella flexneri 2930-71]
gi|332999826|gb|EGK19410.1| DNA primase [Shigella flexneri K-272]
gi|332999964|gb|EGK19547.1| DNA primase [Shigella flexneri K-218]
gi|333014867|gb|EGK34212.1| DNA primase [Shigella flexneri K-304]
gi|333015694|gb|EGK35033.1| DNA primase [Shigella flexneri K-227]
gi|335573941|gb|EGM60279.1| DNA primase [Shigella flexneri J1713]
gi|338768856|gb|EGP23644.1| DNA primase [Escherichia coli PCN033]
gi|339416780|gb|AEJ58452.1| DNA primase [Escherichia coli UMNF18]
gi|340732593|gb|EGR61729.1| DNA primase [Escherichia coli O104:H4 str. 01-09591]
gi|340738699|gb|EGR72947.1| DNA primase [Escherichia coli O104:H4 str. LB226692]
gi|341919168|gb|EGT68780.1| dnaG [Escherichia coli O104:H4 str. C227-11]
gi|342361322|gb|EGU25463.1| DNA primase [Escherichia coli XH140A]
gi|342929691|gb|EGU98413.1| DNA primase [Escherichia coli MS 79-10]
gi|344192730|gb|EGV46818.1| DNA primase [Escherichia coli XH001]
gi|345333066|gb|EGW65518.1| DNA primase [Escherichia coli STEC_C165-02]
gi|345336135|gb|EGW68572.1| DNA primase [Escherichia coli STEC_B2F1]
gi|345348375|gb|EGW80669.1| DNA primase [Escherichia coli STEC_94C]
gi|345351048|gb|EGW83322.1| DNA primase [Escherichia coli 3030-1]
gi|345372789|gb|EGX04752.1| DNA primase [Escherichia coli G58-1]
gi|345375123|gb|EGX07072.1| DNA primase [Escherichia coli STEC_H.1.8]
gi|345385860|gb|EGX15697.1| DNA primase [Escherichia coli STEC_S1191]
gi|345392253|gb|EGX22037.1| DNA primase [Escherichia coli TX1999]
gi|349739611|gb|AEQ14317.1| DNA primase [Escherichia coli O7:K1 str. CE10]
gi|354860430|gb|EHF20876.1| DNA primase [Escherichia coli O104:H4 str. C236-11]
gi|354863748|gb|EHF24179.1| DNA primase [Escherichia coli O104:H4 str. C227-11]
gi|354866038|gb|EHF26462.1| DNA primase [Escherichia coli O104:H4 str. 04-8351]
gi|354872495|gb|EHF32885.1| DNA primase [Escherichia coli O104:H4 str. 09-7901]
gi|354878429|gb|EHF38778.1| DNA primase [Escherichia coli O104:H4 str. 11-3677]
gi|354887659|gb|EHF47932.1| DNA primase [Escherichia coli O104:H4 str. 11-4404]
gi|354891371|gb|EHF51601.1| DNA primase [Escherichia coli O104:H4 str. 11-4522]
gi|354895992|gb|EHF56170.1| DNA primase [Escherichia coli O104:H4 str. 11-4623]
gi|354907344|gb|EHF67408.1| DNA primase [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354909784|gb|EHF69814.1| DNA primase [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354913208|gb|EHF73204.1| DNA primase [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354915566|gb|EHF75543.1| DNA primase [Escherichia coli O104:H4 str. 11-4632 C4]
gi|354922671|gb|EHF82585.1| DNA primase [Escherichia coli O104:H4 str. 11-4632 C5]
gi|359333271|dbj|BAL39718.1| DNA primase [Escherichia coli str. K-12 substr. MDS42]
gi|371594639|gb|EHN83501.1| DNA primase [Escherichia coli H494]
gi|371606440|gb|EHN95037.1| DNA primase [Escherichia coli E101]
gi|371609642|gb|EHN98177.1| DNA primase [Escherichia coli B093]
gi|374360467|gb|AEZ42174.1| DNA primase [Escherichia coli O55:H7 str. RM12579]
gi|375320748|gb|EHS66664.1| DNA primase [Escherichia coli O157:H43 str. T22]
gi|377891212|gb|EHU55665.1| DNA primase [Escherichia coli DEC3A]
gi|377891685|gb|EHU56137.1| DNA primase [Escherichia coli DEC3B]
gi|377903499|gb|EHU67790.1| DNA primase [Escherichia coli DEC3C]
gi|377907685|gb|EHU71908.1| DNA primase [Escherichia coli DEC3D]
gi|377909555|gb|EHU73755.1| DNA primase [Escherichia coli DEC3E]
gi|377919115|gb|EHU83158.1| DNA primase [Escherichia coli DEC3F]
gi|377924367|gb|EHU88314.1| DNA primase [Escherichia coli DEC4A]
gi|377928633|gb|EHU92543.1| DNA primase [Escherichia coli DEC4B]
gi|377939646|gb|EHV03400.1| DNA primase [Escherichia coli DEC4D]
gi|377941053|gb|EHV04799.1| DNA primase [Escherichia coli DEC4C]
gi|377945815|gb|EHV09505.1| DNA primase [Escherichia coli DEC4E]
gi|377955770|gb|EHV19324.1| DNA primase [Escherichia coli DEC4F]
gi|377958420|gb|EHV21933.1| DNA primase [Escherichia coli DEC5A]
gi|377963291|gb|EHV26738.1| DNA primase [Escherichia coli DEC5B]
gi|377971778|gb|EHV35132.1| DNA primase [Escherichia coli DEC5C]
gi|377973356|gb|EHV36697.1| DNA primase [Escherichia coli DEC5D]
gi|377982748|gb|EHV46000.1| DNA primase [Escherichia coli DEC5E]
gi|377990278|gb|EHV53439.1| DNA primase [Escherichia coli DEC6B]
gi|377991668|gb|EHV54818.1| DNA primase [Escherichia coli DEC6A]
gi|377994492|gb|EHV57618.1| DNA primase [Escherichia coli DEC6C]
gi|378005737|gb|EHV68737.1| DNA primase [Escherichia coli DEC6D]
gi|378008860|gb|EHV71819.1| DNA primase [Escherichia coli DEC6E]
gi|378013684|gb|EHV76601.1| DNA primase [Escherichia coli DEC7A]
gi|378022576|gb|EHV85263.1| DNA primase [Escherichia coli DEC7C]
gi|378025828|gb|EHV88468.1| DNA primase [Escherichia coli DEC7D]
gi|378030985|gb|EHV93578.1| DNA primase [Escherichia coli DEC7B]
gi|378036601|gb|EHV99141.1| DNA primase [Escherichia coli DEC7E]
gi|378125680|gb|EHW87078.1| DNA primase [Escherichia coli DEC10E]
gi|378127513|gb|EHW88902.1| DNA primase [Escherichia coli DEC11A]
gi|378139678|gb|EHX00910.1| DNA primase [Escherichia coli DEC11B]
gi|378148678|gb|EHX09815.1| DNA primase [Escherichia coli DEC11C]
gi|378162812|gb|EHX23769.1| DNA primase [Escherichia coli DEC12B]
gi|378167115|gb|EHX28032.1| DNA primase [Escherichia coli DEC12A]
gi|378167451|gb|EHX28363.1| DNA primase [Escherichia coli DEC12C]
gi|378180312|gb|EHX41004.1| DNA primase [Escherichia coli DEC12D]
gi|378185177|gb|EHX45808.1| DNA primase [Escherichia coli DEC12E]
gi|378214345|gb|EHX74652.1| DNA primase [Escherichia coli DEC14A]
gi|378217035|gb|EHX77316.1| DNA primase [Escherichia coli DEC14B]
gi|378226025|gb|EHX86218.1| DNA primase [Escherichia coli DEC14C]
gi|378229568|gb|EHX89705.1| DNA primase [Escherichia coli DEC14D]
gi|380346762|gb|EIA35052.1| DNA primase [Escherichia coli SCI-07]
gi|383104484|gb|AFG41993.1| DNA primase [Escherichia coli P12b]
gi|383391500|gb|AFH16458.1| DNA primase [Escherichia coli KO11FL]
gi|383406662|gb|AFH12905.1| DNA primase [Escherichia coli W]
gi|383468390|gb|EID63411.1| DNA primase [Shigella flexneri 5a str. M90T]
gi|383476008|gb|EID67959.1| DNA primase [Escherichia coli W26]
gi|384380345|gb|EIE38211.1| DNA primase [Escherichia coli J53]
gi|384471189|gb|EIE55274.1| DNA primase [Escherichia coli AI27]
gi|385155018|gb|EIF17024.1| DNA primase [Escherichia coli O32:H37 str. P4]
gi|385538705|gb|EIF85567.1| DNA primase [Escherichia coli M919]
gi|385710405|gb|EIG47396.1| DNA primase [Escherichia coli B799]
gi|386120555|gb|EIG69179.1| DNA primase [Escherichia sp. 4_1_40B]
gi|386150663|gb|EIH01952.1| DNA primase [Escherichia coli 5.0588]
gi|386154538|gb|EIH10899.1| DNA primase [Escherichia coli 97.0259]
gi|386162894|gb|EIH24690.1| DNA primase [Escherichia coli 1.2264]
gi|386165581|gb|EIH32101.1| DNA primase [Escherichia coli 96.0497]
gi|386176228|gb|EIH53707.1| DNA primase [Escherichia coli 3.2608]
gi|386181940|gb|EIH64698.1| DNA primase [Escherichia coli 93.0624]
gi|386203168|gb|EII02159.1| DNA primase [Escherichia coli 96.154]
gi|386207652|gb|EII12157.1| DNA primase [Escherichia coli 5.0959]
gi|386210560|gb|EII21034.1| DNA primase [Escherichia coli 9.0111]
gi|386220127|gb|EII36591.1| DNA primase [Escherichia coli 4.0967]
gi|386226240|gb|EII48550.1| DNA primase [Escherichia coli 2.3916]
gi|386230115|gb|EII57470.1| DNA primase [Escherichia coli 3.3884]
gi|386236223|gb|EII68199.1| DNA primase [Escherichia coli 2.4168]
gi|386237250|gb|EII74196.1| DNA primase [Escherichia coli 3.2303]
gi|386254291|gb|EIJ03981.1| DNA primase [Escherichia coli B41]
gi|386797712|gb|AFJ30746.1| DNA primase [Escherichia coli Xuzhou21]
gi|388338058|gb|EIL04538.1| DNA primase [Escherichia coli O103:H2 str. CVM9450]
gi|388386790|gb|EIL48429.1| DNA primase [Escherichia coli KD2]
gi|388391308|gb|EIL52778.1| DNA primase [Escherichia coli 541-15]
gi|388405635|gb|EIL66059.1| DNA primase [Escherichia coli 576-1]
gi|388407240|gb|EIL67613.1| DNA primase [Escherichia coli 75]
gi|388407464|gb|EIL67835.1| DNA primase [Escherichia coli 541-1]
gi|388421981|gb|EIL81576.1| DNA primase [Escherichia coli CUMT8]
gi|390639255|gb|EIN18734.1| DNA primase [Escherichia coli FRIK1996]
gi|390640967|gb|EIN20410.1| DNA primase [Escherichia coli FDA517]
gi|390641346|gb|EIN20777.1| DNA primase [Escherichia coli FDA505]
gi|390658700|gb|EIN36485.1| DNA primase [Escherichia coli FRIK1985]
gi|390658781|gb|EIN36565.1| DNA primase [Escherichia coli 93-001]
gi|390661835|gb|EIN39484.1| DNA primase [Escherichia coli FRIK1990]
gi|390675575|gb|EIN51715.1| DNA primase [Escherichia coli PA3]
gi|390679047|gb|EIN54982.1| DNA primase [Escherichia coli PA5]
gi|390682549|gb|EIN58309.1| DNA primase [Escherichia coli PA9]
gi|390694243|gb|EIN68844.1| DNA primase [Escherichia coli PA10]
gi|390698744|gb|EIN73118.1| DNA primase [Escherichia coli PA14]
gi|390699082|gb|EIN73441.1| DNA primase [Escherichia coli PA15]
gi|390712930|gb|EIN85874.1| DNA primase [Escherichia coli PA22]
gi|390719941|gb|EIN92655.1| DNA primase [Escherichia coli PA25]
gi|390721968|gb|EIN94658.1| DNA primase [Escherichia coli PA24]
gi|390725694|gb|EIN98187.1| DNA primase [Escherichia coli PA28]
gi|390739342|gb|EIO10524.1| DNA primase [Escherichia coli PA31]
gi|390740183|gb|EIO11333.1| DNA primase [Escherichia coli PA32]
gi|390743524|gb|EIO14493.1| DNA primase [Escherichia coli PA33]
gi|390756706|gb|EIO26207.1| DNA primase [Escherichia coli PA40]
gi|390764375|gb|EIO33586.1| DNA primase [Escherichia coli PA39]
gi|390765299|gb|EIO34478.1| DNA primase [Escherichia coli PA41]
gi|390767032|gb|EIO36140.1| DNA primase [Escherichia coli PA42]
gi|390780477|gb|EIO48177.1| DNA primase [Escherichia coli TW06591]
gi|390787688|gb|EIO55167.1| DNA primase [Escherichia coli TW07945]
gi|390789091|gb|EIO56556.1| DNA primase [Escherichia coli TW10246]
gi|390794636|gb|EIO61926.1| DNA primase [Escherichia coli TW11039]
gi|390802982|gb|EIO70010.1| DNA primase [Escherichia coli TW09098]
gi|390805653|gb|EIO72589.1| DNA primase [Escherichia coli TW09109]
gi|390814604|gb|EIO81168.1| DNA primase [Escherichia coli TW10119]
gi|390824059|gb|EIO90064.1| DNA primase [Escherichia coli EC4203]
gi|390826401|gb|EIO92248.1| DNA primase [Escherichia coli TW09195]
gi|390828999|gb|EIO94625.1| DNA primase [Escherichia coli EC4196]
gi|390843501|gb|EIP07292.1| DNA primase [Escherichia coli TW14313]
gi|390844407|gb|EIP08144.1| DNA primase [Escherichia coli TW14301]
gi|390849138|gb|EIP12584.1| DNA primase [Escherichia coli EC4421]
gi|390859524|gb|EIP21870.1| DNA primase [Escherichia coli EC4422]
gi|390864068|gb|EIP26196.1| DNA primase [Escherichia coli EC4013]
gi|390868645|gb|EIP30382.1| DNA primase [Escherichia coli EC4402]
gi|390876745|gb|EIP37721.1| DNA primase [Escherichia coli EC4439]
gi|390882372|gb|EIP42913.1| DNA primase [Escherichia coli EC4436]
gi|390891857|gb|EIP51473.1| DNA primase [Escherichia coli EC4437]
gi|390894085|gb|EIP53618.1| DNA primase [Escherichia coli EC4448]
gi|390898754|gb|EIP58015.1| DNA primase [Escherichia coli EC1738]
gi|390907234|gb|EIP66103.1| DNA primase [Escherichia coli EC1734]
gi|390917078|gb|EIP75511.1| DNA primase [Escherichia coli EC1863]
gi|390918447|gb|EIP76846.1| DNA primase [Escherichia coli EC1845]
gi|391249091|gb|EIQ08328.1| DNA primase [Shigella flexneri CCH060]
gi|391259603|gb|EIQ18677.1| DNA primase [Shigella flexneri K-315]
gi|391263718|gb|EIQ22718.1| DNA primase [Shigella flexneri K-404]
gi|391277631|gb|EIQ36366.1| DNA primase [Shigella boydii 4444-74]
gi|391279539|gb|EIQ38227.1| DNA primase [Shigella sonnei 3226-85]
gi|391282829|gb|EIQ41458.1| DNA primase [Shigella sonnei 3233-85]
gi|391292633|gb|EIQ50954.1| DNA primase [Shigella sonnei 4822-66]
gi|391299302|gb|EIQ57266.1| DNA primase [Shigella dysenteriae 225-75]
gi|391303593|gb|EIQ61429.1| DNA primase [Escherichia coli EPECa12]
gi|391310848|gb|EIQ68498.1| DNA primase [Escherichia coli EPEC C342-62]
gi|397783795|gb|EJK94652.1| DNA primase [Escherichia coli STEC_O31]
gi|397895419|gb|EJL11848.1| DNA primase [Shigella flexneri 6603-63]
gi|397896755|gb|EJL13168.1| DNA primase [Shigella sonnei str. Moseley]
gi|404337162|gb|EJZ63617.1| DNA primase [Shigella flexneri 1485-80]
gi|406776027|gb|AFS55451.1| DNA primase [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407052602|gb|AFS72653.1| DNA primase [Escherichia coli O104:H4 str. 2011C-3493]
gi|407067073|gb|AFS88120.1| DNA primase [Escherichia coli O104:H4 str. 2009EL-2071]
gi|408062992|gb|EKG97491.1| DNA primase [Escherichia coli PA7]
gi|408065207|gb|EKG99682.1| DNA primase [Escherichia coli FRIK920]
gi|408068292|gb|EKH02717.1| DNA primase [Escherichia coli PA34]
gi|408077795|gb|EKH11986.1| DNA primase [Escherichia coli FDA506]
gi|408081281|gb|EKH15303.1| DNA primase [Escherichia coli FDA507]
gi|408089806|gb|EKH23099.1| DNA primase [Escherichia coli FDA504]
gi|408096048|gb|EKH29004.1| DNA primase [Escherichia coli FRIK1999]
gi|408102551|gb|EKH34952.1| DNA primase [Escherichia coli FRIK1997]
gi|408107224|gb|EKH39310.1| DNA primase [Escherichia coli NE1487]
gi|408113671|gb|EKH45252.1| DNA primase [Escherichia coli NE037]
gi|408119777|gb|EKH50827.1| DNA primase [Escherichia coli FRIK2001]
gi|408125985|gb|EKH56566.1| DNA primase [Escherichia coli PA4]
gi|408136083|gb|EKH65840.1| DNA primase [Escherichia coli PA23]
gi|408138663|gb|EKH68320.1| DNA primase [Escherichia coli PA49]
gi|408145008|gb|EKH74212.1| DNA primase [Escherichia coli PA45]
gi|408153523|gb|EKH81917.1| DNA primase [Escherichia coli TT12B]
gi|408158410|gb|EKH86528.1| DNA primase [Escherichia coli MA6]
gi|408162434|gb|EKH90340.1| DNA primase [Escherichia coli 5905]
gi|408171698|gb|EKH98799.1| DNA primase [Escherichia coli CB7326]
gi|408178511|gb|EKI05218.1| DNA primase [Escherichia coli EC96038]
gi|408181721|gb|EKI08268.1| DNA primase [Escherichia coli 5412]
gi|408191321|gb|EKI16934.1| DNA primase [Escherichia coli TW15901]
gi|408200284|gb|EKI25467.1| DNA primase [Escherichia coli TW00353]
gi|408211416|gb|EKI35962.1| DNA primase [Escherichia coli 07798]
gi|408211690|gb|EKI36235.1| DNA primase [Escherichia coli 3006]
gi|408215378|gb|EKI39776.1| DNA primase [Escherichia coli PA38]
gi|408225434|gb|EKI49116.1| DNA primase [Escherichia coli EC1735]
gi|408226709|gb|EKI50342.1| DNA primase [Escherichia coli N1]
gi|408236733|gb|EKI59626.1| DNA primase [Escherichia coli EC1736]
gi|408240245|gb|EKI62950.1| DNA primase [Escherichia coli EC1737]
gi|408244818|gb|EKI67228.1| DNA primase [Escherichia coli EC1846]
gi|408253757|gb|EKI75344.1| DNA primase [Escherichia coli EC1847]
gi|408257513|gb|EKI78827.1| DNA primase [Escherichia coli EC1848]
gi|408264049|gb|EKI84865.1| DNA primase [Escherichia coli EC1849]
gi|408272724|gb|EKI92799.1| DNA primase [Escherichia coli EC1850]
gi|408275596|gb|EKI95552.1| DNA primase [Escherichia coli EC1856]
gi|408283921|gb|EKJ03051.1| DNA primase [Escherichia coli EC1862]
gi|408289860|gb|EKJ08606.1| DNA primase [Escherichia coli EC1864]
gi|408305676|gb|EKJ23067.1| DNA primase [Escherichia coli EC1868]
gi|408306240|gb|EKJ23615.1| DNA primase [Escherichia coli EC1866]
gi|408317132|gb|EKJ33375.1| DNA primase [Escherichia coli EC1869]
gi|408322758|gb|EKJ38734.1| DNA primase [Escherichia coli EC1870]
gi|408325154|gb|EKJ41059.1| DNA primase [Escherichia coli NE098]
gi|408335174|gb|EKJ50028.1| DNA primase [Escherichia coli FRIK523]
gi|408342084|gb|EKJ56519.1| DNA primase [Escherichia coli 0.1288]
gi|408344632|gb|EKJ58987.1| DNA primase [Escherichia coli 0.1304]
gi|408460049|gb|EKJ83829.1| DNA primase [Escherichia coli AD30]
gi|408547621|gb|EKK25015.1| DNA primase [Escherichia coli 5.2239]
gi|408547763|gb|EKK25156.1| DNA primase [Escherichia coli 3.4870]
gi|408548903|gb|EKK26275.1| DNA primase [Escherichia coli 6.0172]
gi|408565505|gb|EKK41589.1| DNA primase [Escherichia coli 8.0566]
gi|408566335|gb|EKK42408.1| DNA primase [Escherichia coli 8.0586]
gi|408566505|gb|EKK42572.1| DNA primase [Escherichia coli 8.0569]
gi|408577264|gb|EKK52839.1| DNA primase [Escherichia coli 10.0833]
gi|408580116|gb|EKK55554.1| DNA primase [Escherichia coli 8.2524]
gi|408589845|gb|EKK64346.1| DNA primase [Escherichia coli 10.0869]
gi|408595260|gb|EKK69518.1| DNA primase [Escherichia coli 88.0221]
gi|408599826|gb|EKK73709.1| DNA primase [Escherichia coli 8.0416]
gi|408610632|gb|EKK83998.1| DNA primase [Escherichia coli 10.0821]
gi|412964445|emb|CCK48373.1| DNA biosynthesis; DNA primase [Escherichia coli chi7122]
gi|412971035|emb|CCJ45687.1| DNA biosynthesis; DNA primase [Escherichia coli]
gi|427202759|gb|EKV73074.1| DNA primase [Escherichia coli 88.1042]
gi|427204033|gb|EKV74321.1| DNA primase [Escherichia coli 89.0511]
gi|427206599|gb|EKV76803.1| DNA primase [Escherichia coli 88.1467]
gi|427219073|gb|EKV88043.1| DNA primase [Escherichia coli 90.0091]
gi|427222567|gb|EKV91339.1| DNA primase [Escherichia coli 90.2281]
gi|427239895|gb|EKW07363.1| DNA primase [Escherichia coli 93.0056]
gi|427240158|gb|EKW07617.1| DNA primase [Escherichia coli 93.0055]
gi|427244177|gb|EKW11512.1| DNA primase [Escherichia coli 94.0618]
gi|427258726|gb|EKW24808.1| DNA primase [Escherichia coli 95.0183]
gi|427259585|gb|EKW25621.1| DNA primase [Escherichia coli 95.0943]
gi|427262062|gb|EKW27968.1| DNA primase [Escherichia coli 95.1288]
gi|427274908|gb|EKW39545.1| DNA primase [Escherichia coli 96.0428]
gi|427277611|gb|EKW42144.1| DNA primase [Escherichia coli 96.0427]
gi|427281801|gb|EKW46101.1| DNA primase [Escherichia coli 96.0939]
gi|427290247|gb|EKW53737.1| DNA primase [Escherichia coli 96.0932]
gi|427297343|gb|EKW60380.1| DNA primase [Escherichia coli 96.0107]
gi|427299084|gb|EKW62073.1| DNA primase [Escherichia coli 97.0003]
gi|427310280|gb|EKW72538.1| DNA primase [Escherichia coli 97.1742]
gi|427313226|gb|EKW75350.1| DNA primase [Escherichia coli 97.0007]
gi|427317676|gb|EKW79570.1| DNA primase [Escherichia coli 99.0672]
gi|427326018|gb|EKW87444.1| DNA primase [Escherichia coli 99.0678]
gi|427327717|gb|EKW89100.1| DNA primase [Escherichia coli 99.0713]
gi|429252161|gb|EKY36712.1| DNA primase [Escherichia coli 96.0109]
gi|429253663|gb|EKY38144.1| DNA primase [Escherichia coli 97.0010]
gi|429346477|gb|EKY83256.1| DNA primase [Escherichia coli O104:H4 str. 11-02092]
gi|429357331|gb|EKY94004.1| DNA primase [Escherichia coli O104:H4 str. 11-02030]
gi|429358837|gb|EKY95504.1| DNA primase [Escherichia coli O104:H4 str. 11-02033-1]
gi|429372623|gb|EKZ09172.1| DNA primase [Escherichia coli O104:H4 str. 11-02093]
gi|429374564|gb|EKZ11103.1| DNA primase [Escherichia coli O104:H4 str. 11-02281]
gi|429378246|gb|EKZ14760.1| DNA primase [Escherichia coli O104:H4 str. 11-02318]
gi|429388426|gb|EKZ24851.1| DNA primase [Escherichia coli O104:H4 str. 11-02913]
gi|429391813|gb|EKZ28216.1| DNA primase [Escherichia coli O104:H4 str. 11-03439]
gi|429392204|gb|EKZ28605.1| DNA primase [Escherichia coli O104:H4 str. 11-03943]
gi|429402693|gb|EKZ38983.1| DNA primase [Escherichia coli O104:H4 str. 11-04080]
gi|429404232|gb|EKZ40510.1| DNA primase [Escherichia coli O104:H4 str. Ec11-9990]
gi|429407943|gb|EKZ44190.1| DNA primase [Escherichia coli O104:H4 str. Ec11-9450]
gi|429415513|gb|EKZ51678.1| DNA primase [Escherichia coli O104:H4 str. Ec11-4984]
gi|429419034|gb|EKZ55173.1| DNA primase [Escherichia coli O104:H4 str. Ec11-4986]
gi|429425388|gb|EKZ61478.1| DNA primase [Escherichia coli O104:H4 str. Ec11-4987]
gi|429430431|gb|EKZ66496.1| DNA primase [Escherichia coli O104:H4 str. Ec11-4988]
gi|429434425|gb|EKZ70452.1| DNA primase [Escherichia coli O104:H4 str. Ec11-5603]
gi|429436905|gb|EKZ72920.1| DNA primase [Escherichia coli O104:H4 str. Ec11-6006]
gi|429441494|gb|EKZ77464.1| DNA primase [Escherichia coli O104:H4 str. Ec11-5604]
gi|429445797|gb|EKZ81736.1| DNA primase [Escherichia coli O104:H4 str. Ec12-0465]
gi|429455562|gb|EKZ91417.1| DNA primase [Escherichia coli O104:H4 str. Ec12-0466]
gi|429459277|gb|EKZ95096.1| DNA primase [Escherichia coli O104:H4 str. Ec11-9941]
gi|430873980|gb|ELB97546.1| DNA primase [Escherichia coli KTE2]
gi|430891865|gb|ELC14386.1| DNA primase [Escherichia coli KTE10]
gi|430896706|gb|ELC18934.1| DNA primase [Escherichia coli KTE12]
gi|430923840|gb|ELC44573.1| DNA primase [Escherichia coli KTE26]
gi|430937871|gb|ELC58125.1| DNA primase [Escherichia coli KTE44]
gi|430953109|gb|ELC72022.1| DNA primase [Escherichia coli KTE181]
gi|430978597|gb|ELC95408.1| DNA primase [Escherichia coli KTE193]
gi|430986349|gb|ELD02920.1| DNA primase [Escherichia coli KTE204]
gi|431002640|gb|ELD18147.1| DNA primase [Escherichia coli KTE208]
gi|431004905|gb|ELD20114.1| DNA primase [Escherichia coli KTE210]
gi|431014523|gb|ELD28231.1| DNA primase [Escherichia coli KTE212]
gi|431018907|gb|ELD32337.1| DNA primase [Escherichia coli KTE213]
gi|431048512|gb|ELD58488.1| DNA primase [Escherichia coli KTE228]
gi|431058762|gb|ELD68149.1| DNA primase [Escherichia coli KTE234]
gi|431061519|gb|ELD70826.1| DNA primase [Escherichia coli KTE233]
gi|431067834|gb|ELD76350.1| DNA primase [Escherichia coli KTE235]
gi|431072161|gb|ELD79913.1| DNA primase [Escherichia coli KTE236]
gi|431077915|gb|ELD84974.1| DNA primase [Escherichia coli KTE237]
gi|431082499|gb|ELD88813.1| DNA primase [Escherichia coli KTE47]
gi|431091293|gb|ELD97038.1| DNA primase [Escherichia coli KTE51]
gi|431113469|gb|ELE17133.1| DNA primase [Escherichia coli KTE56]
gi|431138213|gb|ELE40049.1| DNA primase [Escherichia coli KTE66]
gi|431157478|gb|ELE58120.1| DNA primase [Escherichia coli KTE76]
gi|431161997|gb|ELE62466.1| DNA primase [Escherichia coli KTE77]
gi|431168080|gb|ELE68334.1| DNA primase [Escherichia coli KTE80]
gi|431169691|gb|ELE69910.1| DNA primase [Escherichia coli KTE81]
gi|431179384|gb|ELE79290.1| DNA primase [Escherichia coli KTE83]
gi|431198353|gb|ELE97178.1| DNA primase [Escherichia coli KTE111]
gi|431199020|gb|ELE97801.1| DNA primase [Escherichia coli KTE116]
gi|431209006|gb|ELF07127.1| DNA primase [Escherichia coli KTE119]
gi|431212187|gb|ELF10129.1| DNA primase [Escherichia coli KTE142]
gi|431220864|gb|ELF18197.1| DNA primase [Escherichia coli KTE156]
gi|431236888|gb|ELF32085.1| DNA primase [Escherichia coli KTE161]
gi|431241597|gb|ELF36033.1| DNA primase [Escherichia coli KTE171]
gi|431261036|gb|ELF53127.1| DNA primase [Escherichia coli KTE9]
gi|431272748|gb|ELF63847.1| DNA primase [Escherichia coli KTE45]
gi|431280610|gb|ELF71526.1| DNA primase [Escherichia coli KTE42]
gi|431294720|gb|ELF84899.1| DNA primase [Escherichia coli KTE29]
gi|431306233|gb|ELF94546.1| DNA primase [Escherichia coli KTE46]
gi|431308488|gb|ELF96768.1| DNA primase [Escherichia coli KTE48]
gi|431316324|gb|ELG04134.1| DNA primase [Escherichia coli KTE54]
gi|431322610|gb|ELG10195.1| DNA primase [Escherichia coli KTE50]
gi|431338368|gb|ELG25455.1| DNA primase [Escherichia coli KTE78]
gi|431349953|gb|ELG36781.1| DNA primase [Escherichia coli KTE79]
gi|431353774|gb|ELG40527.1| DNA primase [Escherichia coli KTE91]
gi|431361131|gb|ELG47730.1| DNA primase [Escherichia coli KTE101]
gi|431361852|gb|ELG48431.1| DNA primase [Escherichia coli KTE115]
gi|431383560|gb|ELG67684.1| DNA primase [Escherichia coli KTE135]
gi|431384083|gb|ELG68206.1| DNA primase [Escherichia coli KTE136]
gi|431387515|gb|ELG71339.1| DNA primase [Escherichia coli KTE140]
gi|431398637|gb|ELG82057.1| DNA primase [Escherichia coli KTE144]
gi|431402745|gb|ELG86050.1| DNA primase [Escherichia coli KTE146]
gi|431414835|gb|ELG97386.1| DNA primase [Escherichia coli KTE158]
gi|431418958|gb|ELH01352.1| DNA primase [Escherichia coli KTE154]
gi|431424083|gb|ELH06180.1| DNA primase [Escherichia coli KTE192]
gi|431436734|gb|ELH18248.1| DNA primase [Escherichia coli KTE190]
gi|431451271|gb|ELH31747.1| DNA primase [Escherichia coli KTE184]
gi|431455772|gb|ELH36127.1| DNA primase [Escherichia coli KTE196]
gi|431465796|gb|ELH45877.1| DNA primase [Escherichia coli KTE197]
gi|431468847|gb|ELH48780.1| DNA primase [Escherichia coli KTE203]
gi|431472107|gb|ELH51999.1| DNA primase [Escherichia coli KTE202]
gi|431528542|gb|ELI05249.1| DNA primase [Escherichia coli KTE105]
gi|431541679|gb|ELI17118.1| DNA primase [Escherichia coli KTE109]
gi|431548237|gb|ELI22524.1| DNA primase [Escherichia coli KTE112]
gi|431554363|gb|ELI28244.1| DNA primase [Escherichia coli KTE117]
gi|431562896|gb|ELI36139.1| DNA primase [Escherichia coli KTE120]
gi|431567586|gb|ELI40579.1| DNA primase [Escherichia coli KTE122]
gi|431579228|gb|ELI51812.1| DNA primase [Escherichia coli KTE125]
gi|431580449|gb|ELI53008.1| DNA primase [Escherichia coli KTE128]
gi|431608736|gb|ELI78078.1| DNA primase [Escherichia coli KTE138]
gi|431640408|gb|ELJ08168.1| DNA primase [Escherichia coli KTE157]
gi|431644366|gb|ELJ12028.1| DNA primase [Escherichia coli KTE163]
gi|431654941|gb|ELJ21988.1| DNA primase [Escherichia coli KTE166]
gi|431674969|gb|ELJ41115.1| DNA primase [Escherichia coli KTE177]
gi|431690245|gb|ELJ55729.1| DNA primase [Escherichia coli KTE232]
gi|431698972|gb|ELJ63993.1| DNA primase [Escherichia coli KTE82]
gi|431713822|gb|ELJ78030.1| DNA primase [Escherichia coli KTE90]
gi|431718221|gb|ELJ82302.1| DNA primase [Escherichia coli KTE95]
gi|441606607|emb|CCP99464.1| DNA primase [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|441654293|emb|CCQ00842.1| DNA primase [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|443423641|gb|AGC88545.1| DNA primase [Escherichia coli APEC O78]
gi|444536380|gb|ELV16404.1| DNA primase [Escherichia coli 99.0814]
gi|444538074|gb|ELV17973.1| DNA primase [Escherichia coli 09BKT078844]
gi|444546421|gb|ELV25161.1| DNA primase [Escherichia coli 99.0815]
gi|444556013|gb|ELV33446.1| DNA primase [Escherichia coli 99.0839]
gi|444556323|gb|ELV33741.1| DNA primase [Escherichia coli 99.0816]
gi|444561304|gb|ELV38429.1| DNA primase [Escherichia coli 99.0848]
gi|444570712|gb|ELV47229.1| DNA primase [Escherichia coli 99.1753]
gi|444574459|gb|ELV50757.1| DNA primase [Escherichia coli 99.1775]
gi|444577851|gb|ELV53954.1| DNA primase [Escherichia coli 99.1793]
gi|444591127|gb|ELV66419.1| DNA primase [Escherichia coli PA11]
gi|444591226|gb|ELV66517.1| DNA primase [Escherichia coli ATCC 700728]
gi|444592612|gb|ELV67864.1| DNA primase [Escherichia coli 99.1805]
gi|444604484|gb|ELV79149.1| DNA primase [Escherichia coli PA13]
gi|444605532|gb|ELV80173.1| DNA primase [Escherichia coli PA19]
gi|444613672|gb|ELV87922.1| DNA primase [Escherichia coli PA2]
gi|444621349|gb|ELV95325.1| DNA primase [Escherichia coli PA47]
gi|444622362|gb|ELV96323.1| DNA primase [Escherichia coli PA48]
gi|444628180|gb|ELW01924.1| DNA primase [Escherichia coli PA8]
gi|444636586|gb|ELW09977.1| DNA primase [Escherichia coli 7.1982]
gi|444639666|gb|ELW12973.1| DNA primase [Escherichia coli 99.1781]
gi|444643562|gb|ELW16709.1| DNA primase [Escherichia coli 99.1762]
gi|444652690|gb|ELW25439.1| DNA primase [Escherichia coli PA35]
gi|444658382|gb|ELW30839.1| DNA primase [Escherichia coli 3.4880]
gi|444661436|gb|ELW33748.1| DNA primase [Escherichia coli 95.0083]
gi|444668517|gb|ELW40530.1| DNA primase [Escherichia coli 99.0670]
gi|449315180|gb|EMD05328.1| DNA primase [Escherichia coli O08]
gi|449316372|gb|EMD06489.1| DNA primase [Escherichia coli S17]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|428973176|ref|ZP_19043499.1| DNA primase [Escherichia coli 90.0039]
gi|427225791|gb|EKV94408.1| DNA primase [Escherichia coli 90.0039]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|423104914|ref|ZP_17092616.1| DNA primase [Klebsiella oxytoca 10-5242]
gi|376381680|gb|EHS94416.1| DNA primase [Klebsiella oxytoca 10-5242]
Length = 587
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 166/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + A +L+KRGL+ E+I RF +GYAP W N L + + N +L +
Sbjct: 132 FYQQSLMQPAAGPARQYLEKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQENRQSLIDA 191
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 192 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDAM-PKYLNS 239
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+ H
Sbjct: 240 PETDIFHKGRQLYGLYEAQQDNAEPPRLLVVEGYMDVVALAQFGINYAVASLGTSTTADH 299
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN ++ +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 300 IQLLFRVTNQVVCCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 359
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 360 GKAAFEARMEQAQPLSTFLFNSLLPQVDLST 390
>gi|365847770|ref|ZP_09388252.1| DNA primase [Yokenella regensburgei ATCC 43003]
gi|364571626|gb|EHM49203.1| DNA primase [Yokenella regensburgei ATCC 43003]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 166/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L N + A +L+KRGL+ E+I RF +GYAP W N L + + N +L +
Sbjct: 126 FYQQSLTNPAAAPARQYLEKRGLSSEVISRFAIGYAPPGWDNVLKRFGAESENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDGM-PKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQTQAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLLPQVDLST 384
>gi|333902136|ref|YP_004476009.1| DNA primase [Pseudomonas fulva 12-X]
gi|333117401|gb|AEF23915.1| DNA primase [Pseudomonas fulva 12-X]
Length = 659
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 113/279 (40%), Positives = 167/279 (59%), Gaps = 16/279 (5%)
Query: 3 CASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
A+D+Y+ LK+ + A+ +LK RGL+ EI F LG+AP W N L + D
Sbjct: 122 AAADYYRQALKSHPQRRAAVEYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLAGDSLQHT 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+V+ + KRYDRFR R++FPI ++ G++I FGGR++ D ++
Sbjct: 182 AMIDAGLLVENP----------DSGKRYDRFRDRVIFPIHDSRGRVIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLYEARKHNRNLDEIMVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K+I S++F FDGDQAGR AA RALE L D + +FLFLPD DPD+
Sbjct: 291 TSEEHLKRIFRLVPSVLFCFDGDQAGRNAAWRALEAALPNLQDGRRARFLFLPDGEDPDT 350
Query: 239 YIRKFGYKIFSKKVLE-AMSLLQFFLEEIILNYNLKTIK 276
+R G F ++ + A L +F +++ + ++++
Sbjct: 351 LVRSEGTDAFQARIHQHAQPLADYFFQQLSEEADPRSLE 389
>gi|421729242|ref|ZP_16168387.1| DNA primase [Klebsiella oxytoca M5al]
gi|410369969|gb|EKP24705.1| DNA primase [Klebsiella oxytoca M5al]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 166/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + A +L+KRGL+ E+I RF +GYAP W N L + + N +L +
Sbjct: 126 FYQQSLMQPAADPARQYLEKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPSRLLVVEGYMDVVALAQFGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN ++ +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNQVVCCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLLPQVDLST 384
>gi|423702573|ref|ZP_17677005.1| DNA primase [Escherichia coli H730]
gi|385710065|gb|EIG47057.1| DNA primase [Escherichia coli H730]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|218701837|ref|YP_002409466.1| DNA primase [Escherichia coli IAI39]
gi|218371823|emb|CAR19678.1| DNA primase [Escherichia coli IAI39]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|110806953|ref|YP_690473.1| DNA primase [Shigella flexneri 5 str. 8401]
gi|110616501|gb|ABF05168.1| DNA primase [Shigella flexneri 5 str. 8401]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|82778396|ref|YP_404745.1| DNA primase [Shigella dysenteriae Sd197]
gi|309785375|ref|ZP_07680006.1| DNA primase [Shigella dysenteriae 1617]
gi|81242544|gb|ABB63254.1| DNA primase [Shigella dysenteriae Sd197]
gi|308926495|gb|EFP71971.1| DNA primase [Shigella dysenteriae 1617]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|417614666|ref|ZP_12265121.1| DNA primase [Escherichia coli STEC_EH250]
gi|345360512|gb|EGW92681.1| DNA primase [Escherichia coli STEC_EH250]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRTTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|402840106|ref|ZP_10888575.1| DNA primase [Klebsiella sp. OBRC7]
gi|402287056|gb|EJU35516.1| DNA primase [Klebsiella sp. OBRC7]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 166/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + A +L+KRGL+ E+I RF +GYAP W N L + + N +L +
Sbjct: 126 FYQQSLMQPAAGPARQYLEKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDAM-PKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPPRLLVVEGYMDVVALAQFGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN ++ +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNQVVCCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEGRMEQAQPLSTFLFNSLLPQVDLST 384
>gi|432681795|ref|ZP_19917155.1| DNA primase [Escherichia coli KTE143]
gi|431218289|gb|ELF15769.1| DNA primase [Escherichia coli KTE143]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|417609743|ref|ZP_12260242.1| DNA primase [Escherichia coli STEC_DG131-3]
gi|419308017|ref|ZP_13849913.1| DNA primase [Escherichia coli DEC11D]
gi|419313081|ref|ZP_13854940.1| DNA primase [Escherichia coli DEC11E]
gi|345356204|gb|EGW88411.1| DNA primase [Escherichia coli STEC_DG131-3]
gi|378146224|gb|EHX07377.1| DNA primase [Escherichia coli DEC11D]
gi|378156107|gb|EHX17159.1| DNA primase [Escherichia coli DEC11E]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|260857196|ref|YP_003231087.1| DNA primase [Escherichia coli O26:H11 str. 11368]
gi|260869818|ref|YP_003236220.1| DNA primase DnaG [Escherichia coli O111:H- str. 11128]
gi|415787256|ref|ZP_11493960.1| DNA primase [Escherichia coli EPECa14]
gi|415820647|ref|ZP_11509754.1| DNA primase [Escherichia coli OK1180]
gi|417201156|ref|ZP_12017727.1| DNA primase [Escherichia coli 4.0522]
gi|417211215|ref|ZP_12021632.1| DNA primase [Escherichia coli JB1-95]
gi|417296578|ref|ZP_12083825.1| DNA primase [Escherichia coli 900105 (10e)]
gi|417593462|ref|ZP_12244154.1| DNA primase [Escherichia coli 2534-86]
gi|419198755|ref|ZP_13742051.1| DNA primase [Escherichia coli DEC8A]
gi|419205278|ref|ZP_13748444.1| DNA primase [Escherichia coli DEC8B]
gi|419211509|ref|ZP_13754578.1| DNA primase [Escherichia coli DEC8C]
gi|419217381|ref|ZP_13760377.1| DNA primase [Escherichia coli DEC8D]
gi|419223204|ref|ZP_13766118.1| DNA primase [Escherichia coli DEC8E]
gi|419228633|ref|ZP_13771478.1| DNA primase [Escherichia coli DEC9A]
gi|419234098|ref|ZP_13776868.1| DNA primase [Escherichia coli DEC9B]
gi|419239602|ref|ZP_13782312.1| DNA primase [Escherichia coli DEC9C]
gi|419245090|ref|ZP_13787724.1| DNA primase [Escherichia coli DEC9D]
gi|419250966|ref|ZP_13793537.1| DNA primase [Escherichia coli DEC9E]
gi|419256660|ref|ZP_13799165.1| DNA primase [Escherichia coli DEC10A]
gi|419262959|ref|ZP_13805369.1| DNA primase [Escherichia coli DEC10B]
gi|419268531|ref|ZP_13810876.1| DNA primase [Escherichia coli DEC10C]
gi|419274415|ref|ZP_13816705.1| DNA primase [Escherichia coli DEC10D]
gi|419285942|ref|ZP_13828109.1| DNA primase [Escherichia coli DEC10F]
gi|419878009|ref|ZP_14399490.1| DNA primase [Escherichia coli O111:H11 str. CVM9534]
gi|419885375|ref|ZP_14406141.1| DNA primase [Escherichia coli O111:H11 str. CVM9545]
gi|419891726|ref|ZP_14411769.1| DNA primase [Escherichia coli O111:H8 str. CVM9570]
gi|419896276|ref|ZP_14415994.1| DNA primase [Escherichia coli O111:H8 str. CVM9574]
gi|419898964|ref|ZP_14418498.1| DNA primase [Escherichia coli O26:H11 str. CVM9942]
gi|419910841|ref|ZP_14429349.1| hypothetical protein ECO10026_27465 [Escherichia coli O26:H11 str.
CVM10026]
gi|420091978|ref|ZP_14603703.1| DNA primase [Escherichia coli O111:H8 str. CVM9602]
gi|420096329|ref|ZP_14607731.1| DNA primase [Escherichia coli O111:H8 str. CVM9634]
gi|420102816|ref|ZP_14613763.1| DNA primase [Escherichia coli O111:H11 str. CVM9455]
gi|420110988|ref|ZP_14620866.1| DNA primase [Escherichia coli O111:H11 str. CVM9553]
gi|420116176|ref|ZP_14625630.1| DNA primase [Escherichia coli O26:H11 str. CVM10021]
gi|420118493|ref|ZP_14627814.1| DNA primase [Escherichia coli O26:H11 str. CVM10030]
gi|420128495|ref|ZP_14637050.1| DNA primase DnaG [Escherichia coli O26:H11 str. CVM10224]
gi|420134325|ref|ZP_14642435.1| DNA primase [Escherichia coli O26:H11 str. CVM9952]
gi|424746386|ref|ZP_18174625.1| DNA primase DnaG [Escherichia coli O26:H11 str. CFSAN001629]
gi|424757736|ref|ZP_18185469.1| DNA primase DnaG [Escherichia coli O111:H11 str. CFSAN001630]
gi|424769730|ref|ZP_18196954.1| DNA primase DnaG [Escherichia coli O111:H8 str. CFSAN001632]
gi|425381333|ref|ZP_18765333.1| DNA primase [Escherichia coli EC1865]
gi|257755845|dbj|BAI27347.1| DNA primase DnaG [Escherichia coli O26:H11 str. 11368]
gi|257766174|dbj|BAI37669.1| DNA primase DnaG [Escherichia coli O111:H- str. 11128]
gi|323154522|gb|EFZ40722.1| DNA primase [Escherichia coli EPECa14]
gi|323178772|gb|EFZ64348.1| DNA primase [Escherichia coli OK1180]
gi|345334572|gb|EGW67015.1| DNA primase [Escherichia coli 2534-86]
gi|378044731|gb|EHW07143.1| DNA primase [Escherichia coli DEC8A]
gi|378045273|gb|EHW07673.1| DNA primase [Escherichia coli DEC8B]
gi|378050704|gb|EHW13031.1| DNA primase [Escherichia coli DEC8C]
gi|378059970|gb|EHW22169.1| DNA primase [Escherichia coli DEC8D]
gi|378063398|gb|EHW25567.1| DNA primase [Escherichia coli DEC8E]
gi|378070979|gb|EHW33052.1| DNA primase [Escherichia coli DEC9A]
gi|378075331|gb|EHW37355.1| DNA primase [Escherichia coli DEC9B]
gi|378081695|gb|EHW43645.1| DNA primase [Escherichia coli DEC9C]
gi|378088087|gb|EHW49942.1| DNA primase [Escherichia coli DEC9D]
gi|378092423|gb|EHW54249.1| DNA primase [Escherichia coli DEC9E]
gi|378098549|gb|EHW60285.1| DNA primase [Escherichia coli DEC10A]
gi|378103890|gb|EHW65553.1| DNA primase [Escherichia coli DEC10B]
gi|378109037|gb|EHW70648.1| DNA primase [Escherichia coli DEC10C]
gi|378114140|gb|EHW75697.1| DNA primase [Escherichia coli DEC10D]
gi|378128941|gb|EHW90321.1| DNA primase [Escherichia coli DEC10F]
gi|386187224|gb|EIH76044.1| DNA primase [Escherichia coli 4.0522]
gi|386195819|gb|EIH90054.1| DNA primase [Escherichia coli JB1-95]
gi|386260022|gb|EIJ15496.1| DNA primase [Escherichia coli 900105 (10e)]
gi|388336556|gb|EIL03095.1| DNA primase [Escherichia coli O111:H11 str. CVM9534]
gi|388348948|gb|EIL14506.1| DNA primase [Escherichia coli O111:H8 str. CVM9570]
gi|388350379|gb|EIL15769.1| DNA primase [Escherichia coli O111:H11 str. CVM9545]
gi|388358452|gb|EIL22901.1| DNA primase [Escherichia coli O111:H8 str. CVM9574]
gi|388370711|gb|EIL34225.1| hypothetical protein ECO10026_27465 [Escherichia coli O26:H11 str.
CVM10026]
gi|388380750|gb|EIL43335.1| DNA primase [Escherichia coli O26:H11 str. CVM9942]
gi|394381243|gb|EJE58939.1| DNA primase [Escherichia coli O111:H8 str. CVM9602]
gi|394385496|gb|EJE63026.1| DNA primase DnaG [Escherichia coli O26:H11 str. CVM10224]
gi|394389316|gb|EJE66463.1| DNA primase [Escherichia coli O111:H8 str. CVM9634]
gi|394399679|gb|EJE75678.1| DNA primase [Escherichia coli O111:H11 str. CVM9553]
gi|394404580|gb|EJE79940.1| DNA primase [Escherichia coli O26:H11 str. CVM10021]
gi|394409918|gb|EJE84368.1| DNA primase [Escherichia coli O111:H11 str. CVM9455]
gi|394421705|gb|EJE95159.1| DNA primase [Escherichia coli O26:H11 str. CVM9952]
gi|394432871|gb|EJF04934.1| DNA primase [Escherichia coli O26:H11 str. CVM10030]
gi|408294732|gb|EKJ13104.1| DNA primase [Escherichia coli EC1865]
gi|421943860|gb|EKU01132.1| DNA primase DnaG [Escherichia coli O111:H8 str. CFSAN001632]
gi|421948222|gb|EKU05259.1| DNA primase DnaG [Escherichia coli O26:H11 str. CFSAN001629]
gi|421949088|gb|EKU06080.1| DNA primase DnaG [Escherichia coli O111:H11 str. CFSAN001630]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|389839628|ref|YP_006341712.1| DNA primase [Cronobacter sakazakii ES15]
gi|417789809|ref|ZP_12437417.1| DNA primase [Cronobacter sakazakii E899]
gi|429106159|ref|ZP_19168028.1| DNA primase [Cronobacter malonaticus 681]
gi|429116785|ref|ZP_19177703.1| DNA primase [Cronobacter sakazakii 701]
gi|429120539|ref|ZP_19181209.1| DNA primase [Cronobacter sakazakii 680]
gi|449306898|ref|YP_007439254.1| DNA primase [Cronobacter sakazakii SP291]
gi|333956008|gb|EGL73703.1| DNA primase [Cronobacter sakazakii E899]
gi|387850104|gb|AFJ98201.1| DNA primase [Cronobacter sakazakii ES15]
gi|426292882|emb|CCJ94141.1| DNA primase [Cronobacter malonaticus 681]
gi|426319914|emb|CCK03816.1| DNA primase [Cronobacter sakazakii 701]
gi|426324947|emb|CCK11946.1| DNA primase [Cronobacter sakazakii 680]
gi|449096931|gb|AGE84965.1| DNA primase [Cronobacter sakazakii SP291]
Length = 581
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 138/436 (31%), Positives = 231/436 (52%), Gaps = 28/436 (6%)
Query: 7 FYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ +Q ++++ A +L KRGL+E +I RF +GYAP W N L + + N +L +
Sbjct: 126 FYRQALQAQSAEPARQYLAKRGLSESVIERFAIGYAPPGWDNVLKRFGNNSENRKSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+E + + +L+ EGYMDV+ LSQ+ VA LGTA T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEVQQSDPNPPRLLVVEGYMDVVALSQYDINYAVASLGTATTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +R+
Sbjct: 294 IQMLFRVTNNVICCYDGDRAGRSAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRQE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F ++ +A L F ++ +L T + L +P +LR +
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLLPQVDLSTPDGRAQLSTLALPLISQVP-GETLRIYLR 412
Query: 304 SSLS-KIIKVSFNEINNLF--KINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
L K+ + +++ L + + S + K+ I I LL+ P L
Sbjct: 413 QELGNKLGILDDSQLERLMTRQADNSQTRPAPTLKRTTMRILI-----GLLVQNPELAPL 467
Query: 361 INSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQDN 420
+ S + K +++F +L++T + + + + +++ + + + D+
Sbjct: 468 VPS--LAALDKTKLPGLELFAELVNTC-LSQPGLTTGQLLEHYRGTKEAATLEKLSTWDD 524
Query: 421 FEYSIEIAKKTLLDAI 436
+IA+KT DA+
Sbjct: 525 IA-DKDIAEKTFTDAL 539
>gi|339050951|ref|ZP_08647765.1| DNA primase [gamma proteobacterium IMCC2047]
gi|330721842|gb|EGG99812.1| DNA primase [gamma proteobacterium IMCC2047]
Length = 639
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 121/319 (37%), Positives = 186/319 (58%), Gaps = 18/319 (5%)
Query: 4 ASDFYKIQLKN--SKE-AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFL-DYNNINT 59
A DF+ QL+ SKE AIN+LK R L E F +GYAP W L + +
Sbjct: 121 AQDFFSQQLRQHPSKERAINYLKGRQLTGETAKAFAIGYAPPGWENLRETLSKSEKDEQQ 180
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L +GL++ + ++ YDRFR RI+FPI++ G+ I FGGR++ D ++ K
Sbjct: 181 LIEAGLLIKRE----------DRDGCYDRFRDRIIFPIRDNRGRTIAFGGRVLGD-DKPK 229
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPE+P+FHK NELYGL+EA+ A + LI EGYMDV+ L+Q G TVA LGT+
Sbjct: 230 YLNSPESPVFHKGNELYGLYEARQASNRLSRFLIVEGYMDVVALAQHGIHYTVATLGTSA 289
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
+ H+ K+ + +IF FDGD AGR+AA RAL+ L D + ++FLFLP+ DPDS
Sbjct: 290 SEAHLNKLFRMVSEVIFCFDGDDAGRKAAARALDTALPILEDGRQVRFLFLPEGEDPDSL 349
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
+ + G F +++ +AM+L + + NL + D K++ + L K+ P+ +
Sbjct: 350 VHQEGKDAFEQRLNQAMTLPDYLFAAVSDGLNLDNLDD--KARMSKLALEKMQPMPRGML 407
Query: 300 FKI-ISSLSKIIKVSFNEI 317
+++ I L+++ +S + +
Sbjct: 408 YELMIQQLAQMTGLSADNL 426
>gi|417358965|ref|YP_002931993.2| DNA primase, putative [Edwardsiella ictaluri 93-146]
gi|409033133|gb|ACR67758.2| DNA primase, putative [Edwardsiella ictaluri 93-146]
Length = 582
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 131/392 (33%), Positives = 216/392 (55%), Gaps = 30/392 (7%)
Query: 2 ICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
+C +Y+ L+ + +A +L RG+++ I+ F +GYAP W NAL + D
Sbjct: 123 LCG--YYQQSLRQPGATQAQQYLTGRGMSQAIMDSFAIGYAPQGWDNALKRFGRDAGGRT 180
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
L +G++V+ E + YDRFR RIM PI++ G++I FGGR++ +
Sbjct: 181 ALNDAGMLVNN-----------ENGRSYDRFRDRIMIPIRDKRGRVIAFGGRVLGNGT-P 228
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPET +FHK +L+GL+EA + +L+ EGYMDVI L+Q+G VA LGT+
Sbjct: 229 KYLNSPETEIFHKGRQLFGLYEALQHAAQPERLLVVEGYMDVIALAQYGVNYAVASLGTS 288
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
T+ HI+ + +T+S++ +DGD AGR AA RALE L Y +D + +KF+FLP+ DPD+
Sbjct: 289 TTAEHIQLLFRHTDSVVCCYDGDNAGREAAWRALETALPYLSDGRQLKFMFLPEGEDPDT 348
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSL 298
IRK G + F +++ +A L F + ++ +L T K L +P +L
Sbjct: 349 LIRKEGAEAFERRMNDAHPLSTFLFDSLLPQVDLSTPDGRTKLSALALPLIGQVP-GETL 407
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISY---- 354
R + SL + K+ + + L K+ + ++ KN QP ++ M++LI+
Sbjct: 408 RLYLRQSLGQ--KLGILDDSQLEKL----LPRRSEAVKNYQPPRLKPTTMRILIALLVQN 461
Query: 355 PSLINEINSEDMIIFSKCSQNYVKMFFQLIDT 386
P+L E+ + D + + + +F +L++T
Sbjct: 462 PALAAEVPTLDGL--HQHPLPGLPLFIELVET 491
>gi|409418290|ref|ZP_11258289.1| DNA primase [Pseudomonas sp. HYS]
Length = 656
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 186/323 (57%), Gaps = 17/323 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNNIN 58
A++FY+ L++ K A+++LK RGL+ EI F LG+AP W+ L K + D
Sbjct: 122 AAAEFYRQALRSHPTRKSAVDYLKGRGLSGEIARDFGLGFAPPGWDNLFKHLSSDTLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D ++
Sbjct: 182 AMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLYEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGDQAGR AA RALE L D + +FLFLP+ DPD+
Sbjct: 291 TSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRKARFLFLPEGEDPDT 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F +++ + ++++ L + +P ++
Sbjct: 351 LVRAEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIEKVP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNL 320
LR + + L +I + ++ L
Sbjct: 410 LRALMRNRLKEITGLDNQQVEQL 432
>gi|218550315|ref|YP_002384106.1| DNA primase [Escherichia fergusonii ATCC 35469]
gi|218357856|emb|CAQ90500.1| DNA primase [Escherichia fergusonii ATCC 35469]
Length = 581
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPQRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|424817599|ref|ZP_18242750.1| DNA primase [Escherichia fergusonii ECD227]
gi|325498619|gb|EGC96478.1| DNA primase [Escherichia fergusonii ECD227]
Length = 581
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPQRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|389775774|ref|ZP_10193639.1| DNA primase [Rhodanobacter spathiphylli B39]
gi|388437015|gb|EIL93841.1| DNA primase [Rhodanobacter spathiphylli B39]
Length = 578
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 120/361 (33%), Positives = 189/361 (52%), Gaps = 20/361 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDY-NNINTLA 61
A+ +Y+ +L S +A + KKRGL+ E I RF LG+AP ++ + K + + L
Sbjct: 120 AAAGWYEGELPRSGDAQAYCKKRGLDAETIRRFRLGWAPAGYDGVIKALGNTPRRMELLN 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G+V E+ +YDRFR R+MFPI + G++I FGGR++ KY+
Sbjct: 180 EAGMVASS-----------ERGSKYDRFRERLMFPILDRRGRVIAFGGRVLSSEQSPKYL 228
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETPLFHK EL+ L++ K A + +++ EGYMDVI L Q G VA LGTA T
Sbjct: 229 NSPETPLFHKGRELFALWQVKQANQSLARIVVVEGYMDVIALHQAGLPIAVATLGTATTP 288
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + ++F FDGD+AGR AA +ALE L D + FLFLPD DPDS +R
Sbjct: 289 EHTEVLFRAAPDVVFCFDGDRAGRAAAWKALESALPRLRDGRQAYFLFLPDGEDPDSLVR 348
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G F K++ EAM L +F E+ + ++ ++ + L +P + R
Sbjct: 349 KEGKDGFEKRIREAMPLSDYFFNELSHDVDMASLDGRARLAERARPLIGKLP-DGAFRDL 407
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEI 361
+ L K + + + + ++ H+ +++ + + LL++ P L +++
Sbjct: 408 MAQELEK-----RSGARAMLQADPAA--HRAVQRPTAVQRSLVRSAISLLLAQPGLADQV 460
Query: 362 N 362
Sbjct: 461 E 461
>gi|422804095|ref|ZP_16852527.1| DNA primase [Escherichia fergusonii B253]
gi|324115355|gb|EGC09319.1| DNA primase [Escherichia fergusonii B253]
Length = 581
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPQRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|254447696|ref|ZP_05061162.1| DNA primase [gamma proteobacterium HTCC5015]
gi|198263039|gb|EDY87318.1| DNA primase [gamma proteobacterium HTCC5015]
Length = 506
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 123/389 (31%), Positives = 212/389 (54%), Gaps = 19/389 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINT 59
M AS Y+ +LK +AI++LK+RGL+ + +G+ P W+ L ++ +
Sbjct: 45 MQQASLHYQSELKRHSQAIDYLKQRGLSGSTAKDYGIGFVPESWDYLIKRLGKNDRTQQQ 104
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L S+G+++ ++ YDRFR RIMFPI++ G+ I FGGR++ + E K
Sbjct: 105 LESAGMLIRNDSGRI-----------YDRFRNRIMFPIRDPRGKTIAFGGRVMGE-GEPK 152
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGL+EAK + +++ EGYMDV+ L+Q G VA LGTAC
Sbjct: 153 YLNSPETPIFHKGRELYGLYEAKRHNKTLEKIVVVEGYMDVVMLAQHGVRYAVASLGTAC 212
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T+ HI+++ + ++F FDGD+AGR AA RAL CL + K ++FLFLP+ DPDS
Sbjct: 213 TADHIQRLFRLVDDVLFCFDGDRAGRDAAWRALNNCLPALQNGKQVRFLFLPEGEDPDSM 272
Query: 240 IRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSL 298
++ G + F +++ ++ L ++ ++ + + ++I I + + L + I +
Sbjct: 273 VQSEGKEAFEQRLAQQSQPLSEYLIDRLKAQCDTQSIDGISRYAALAKPLLEQIQADTFK 332
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINT-SSIKHKTIEKKNIQP---ICIEYQIMKLLISY 354
R + L++ ++ +++ +N + T +KK + I ++ L++
Sbjct: 333 RL-LTEELARAVQRPVDQLFGQGGLNAPPPTQGNTTQKKPPKAQLSITPPRLVIAALLAQ 391
Query: 355 PSLINEINSEDMIIFSKCSQNYVKMFFQL 383
PSL + ED+ + + + V +L
Sbjct: 392 PSLAQTVTDEDLALVASLDERAVPFILEL 420
>gi|432433301|ref|ZP_19675726.1| DNA primase [Escherichia coli KTE187]
gi|432442573|ref|ZP_19684909.1| DNA primase [Escherichia coli KTE189]
gi|432447693|ref|ZP_19689990.1| DNA primase [Escherichia coli KTE191]
gi|432846130|ref|ZP_20078811.1| DNA primase [Escherichia coli KTE141]
gi|433015362|ref|ZP_20203699.1| DNA primase [Escherichia coli KTE104]
gi|433024929|ref|ZP_20212905.1| DNA primase [Escherichia coli KTE106]
gi|433209186|ref|ZP_20392856.1| DNA primase [Escherichia coli KTE97]
gi|433325613|ref|ZP_20402672.1| DNA primase [Escherichia coli J96]
gi|430951483|gb|ELC70703.1| DNA primase [Escherichia coli KTE187]
gi|430964777|gb|ELC82223.1| DNA primase [Escherichia coli KTE189]
gi|430971664|gb|ELC88673.1| DNA primase [Escherichia coli KTE191]
gi|431393640|gb|ELG77204.1| DNA primase [Escherichia coli KTE141]
gi|431528357|gb|ELI05065.1| DNA primase [Escherichia coli KTE104]
gi|431532738|gb|ELI09288.1| DNA primase [Escherichia coli KTE106]
gi|431728971|gb|ELJ92615.1| DNA primase [Escherichia coli KTE97]
gi|432346095|gb|ELL40585.1| DNA primase [Escherichia coli J96]
Length = 581
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVAMSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLLDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|293449404|ref|ZP_06663825.1| DNA primase [Escherichia coli B088]
gi|291322494|gb|EFE61923.1| DNA primase [Escherichia coli B088]
Length = 581
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYVVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|422370472|ref|ZP_16450865.1| DNA primase [Escherichia coli MS 16-3]
gi|315297746|gb|EFU57023.1| DNA primase [Escherichia coli MS 16-3]
Length = 581
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSPTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|260599323|ref|YP_003211894.1| DNA primase [Cronobacter turicensis z3032]
gi|260218500|emb|CBA33677.1| DNA primase [Cronobacter turicensis z3032]
Length = 592
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 138/436 (31%), Positives = 231/436 (52%), Gaps = 28/436 (6%)
Query: 7 FYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ +Q ++ + A ++L KRGL++ +I RF +GYAP W NAL + + N +L +
Sbjct: 137 FYRQALQAQSGEPARHYLAKRGLSDSVIERFAIGYAPPGWDNALKRFGNNSENRKSLIDA 196
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V + + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 197 GMLVTN-----------DNGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 244
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+E + + +L+ EGYMDV+ LSQ+ VA LGTA T+ H
Sbjct: 245 PETDIFHKGRQLYGLYEVQQSDPNPPRLLVVEGYMDVVALSQYDINYAVASLGTATTAEH 304
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +R+
Sbjct: 305 IQMLFRATNTVICCYDGDRAGRSAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRQE 364
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F ++ +A L F ++ +L T + L +P +LR +
Sbjct: 365 GKAAFEARMEQAQPLSTFLFNSLLPQVDLSTPDGRAQLSTLALPLISQVP-GETLRIYLR 423
Query: 304 SSLS-KIIKVSFNEINNLF--KINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
L K+ + +++ L + + S + K+ I I LL+ P L
Sbjct: 424 QELGNKLGILDDSQLERLMTRQADNSQTRPAPTLKRTTMRILI-----GLLVQNPELAPL 478
Query: 361 INSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQDN 420
+ S + K +++F +L++T + + + + +++ + + + D+
Sbjct: 479 VPS--LAALDKTKLPGLELFTELVNTC-LSQPGLTTGQLLEHYRGTKEAATLEKLSTWDD 535
Query: 421 FEYSIEIAKKTLLDAI 436
+IA+KT DA+
Sbjct: 536 IA-DKDIAEKTFTDAL 550
>gi|432870538|ref|ZP_20090995.1| DNA primase [Escherichia coli KTE147]
gi|431409508|gb|ELG92683.1| DNA primase [Escherichia coli KTE147]
Length = 581
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G+++GFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVVGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|292486904|ref|YP_003529774.1| DNA primase [Erwinia amylovora CFBP1430]
gi|292900701|ref|YP_003540070.1| DNA primase [Erwinia amylovora ATCC 49946]
gi|428783833|ref|ZP_19001326.1| DNA primase [Erwinia amylovora ACW56400]
gi|291200549|emb|CBJ47678.1| DNA primase [Erwinia amylovora ATCC 49946]
gi|291552321|emb|CBA19365.1| DNA primase [Erwinia amylovora CFBP1430]
gi|312170974|emb|CBX79233.1| DNA primase [Erwinia amylovora ATCC BAA-2158]
gi|426277548|gb|EKV55273.1| DNA primase [Erwinia amylovora ACW56400]
Length = 581
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 110/277 (39%), Positives = 173/277 (62%), Gaps = 15/277 (5%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M DF++ L S A ++L +RGL++E++ F++G+AP W NAL + + ++
Sbjct: 120 MTGLRDFFQQSLTQGPSAGARDYLAQRGLSDEVVKHFSIGFAPAGWDNALKRFGSNPDDR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+L +G++V ++ + YDRFR R+MFPI + G++IGFGGR++ D
Sbjct: 180 QSLIDAGMLVTN-----------DQGRSYDRFRERVMFPIHDKRGRVIGFGGRVLGDGM- 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA + G +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETEIFHKGRQLYGLYEALKNYPEPGKLLVVEGYMDVVALAQFGVDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 STTAEHIQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
+ +RK G + F ++ +AM L F + ++ +L++
Sbjct: 348 TLVRKEGKEAFEARMEQAMPLSTFLFDTLMPQVDLRS 384
>gi|331648867|ref|ZP_08349955.1| DNA primase [Escherichia coli M605]
gi|386620692|ref|YP_006140272.1| DNA primase [Escherichia coli NA114]
gi|387830963|ref|YP_003350900.1| DNA primase [Escherichia coli SE15]
gi|417663659|ref|ZP_12313239.1| DNA primase [Escherichia coli AA86]
gi|432399033|ref|ZP_19641808.1| DNA primase [Escherichia coli KTE25]
gi|432408159|ref|ZP_19650863.1| DNA primase [Escherichia coli KTE28]
gi|432423493|ref|ZP_19666032.1| DNA primase [Escherichia coli KTE178]
gi|432501642|ref|ZP_19743394.1| DNA primase [Escherichia coli KTE216]
gi|432560351|ref|ZP_19797007.1| DNA primase [Escherichia coli KTE49]
gi|432695952|ref|ZP_19931145.1| DNA primase [Escherichia coli KTE162]
gi|432707429|ref|ZP_19942506.1| DNA primase [Escherichia coli KTE6]
gi|432724552|ref|ZP_19959466.1| DNA primase [Escherichia coli KTE17]
gi|432729133|ref|ZP_19964008.1| DNA primase [Escherichia coli KTE18]
gi|432742822|ref|ZP_19977537.1| DNA primase [Escherichia coli KTE23]
gi|432890454|ref|ZP_20103386.1| DNA primase [Escherichia coli KTE165]
gi|432922100|ref|ZP_20125064.1| DNA primase [Escherichia coli KTE173]
gi|432928899|ref|ZP_20130000.1| DNA primase [Escherichia coli KTE175]
gi|432982531|ref|ZP_20171302.1| DNA primase [Escherichia coli KTE211]
gi|432992186|ref|ZP_20180845.1| DNA primase [Escherichia coli KTE217]
gi|433097887|ref|ZP_20284063.1| DNA primase [Escherichia coli KTE139]
gi|433107335|ref|ZP_20293300.1| DNA primase [Escherichia coli KTE148]
gi|433112318|ref|ZP_20298174.1| DNA primase [Escherichia coli KTE150]
gi|433199807|ref|ZP_20383697.1| DNA primase [Escherichia coli KTE94]
gi|281180120|dbj|BAI56450.1| DNA primase [Escherichia coli SE15]
gi|330909132|gb|EGH37646.1| DNA primase [Escherichia coli AA86]
gi|331042614|gb|EGI14756.1| DNA primase [Escherichia coli M605]
gi|333971193|gb|AEG37998.1| DNA primase [Escherichia coli NA114]
gi|430913638|gb|ELC34759.1| DNA primase [Escherichia coli KTE25]
gi|430928160|gb|ELC48711.1| DNA primase [Escherichia coli KTE28]
gi|430942802|gb|ELC62933.1| DNA primase [Escherichia coli KTE178]
gi|431026559|gb|ELD39630.1| DNA primase [Escherichia coli KTE216]
gi|431089063|gb|ELD94887.1| DNA primase [Escherichia coli KTE49]
gi|431232027|gb|ELF27703.1| DNA primase [Escherichia coli KTE162]
gi|431255857|gb|ELF48935.1| DNA primase [Escherichia coli KTE6]
gi|431263486|gb|ELF55472.1| DNA primase [Escherichia coli KTE17]
gi|431271729|gb|ELF62848.1| DNA primase [Escherichia coli KTE18]
gi|431281980|gb|ELF72878.1| DNA primase [Escherichia coli KTE23]
gi|431431579|gb|ELH13354.1| DNA primase [Escherichia coli KTE165]
gi|431437123|gb|ELH18636.1| DNA primase [Escherichia coli KTE173]
gi|431442022|gb|ELH23129.1| DNA primase [Escherichia coli KTE175]
gi|431489778|gb|ELH69403.1| DNA primase [Escherichia coli KTE211]
gi|431492455|gb|ELH72056.1| DNA primase [Escherichia coli KTE217]
gi|431613476|gb|ELI82672.1| DNA primase [Escherichia coli KTE139]
gi|431624933|gb|ELI93527.1| DNA primase [Escherichia coli KTE148]
gi|431626188|gb|ELI94740.1| DNA primase [Escherichia coli KTE150]
gi|431719019|gb|ELJ83088.1| DNA primase [Escherichia coli KTE94]
Length = 581
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVAMSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|429090135|ref|ZP_19152867.1| DNA primase [Cronobacter universalis NCTC 9529]
gi|426509938|emb|CCK17979.1| DNA primase [Cronobacter universalis NCTC 9529]
Length = 581
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 138/436 (31%), Positives = 231/436 (52%), Gaps = 28/436 (6%)
Query: 7 FYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ +Q ++ + A ++L KRGL++ +I RF +GYAP W NAL + + N +L +
Sbjct: 126 FYRQALQAQSGEPARHYLAKRGLSDSVIERFAIGYAPPGWDNALKRFGNNSENRKSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V + + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DNGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+E + + +L+ EGYMDV+ L+Q+ VA LGTA T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEVQQSDPNPQRLLVVEGYMDVVALAQYDINYAVASLGTATTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQMLFRATNTVICCYDGDRAGRSAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F ++ +A L F ++ +L T + L +P +LR +
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLLPQVDLSTPDGRAQLSTLALPLISQVP-GETLRIYLR 412
Query: 304 SSLS-KIIKVSFNEINNLF--KINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
L K+ + +++ L + + S + K+ I I LL+ P L
Sbjct: 413 QELGNKLGILDDSQLERLMTRQADNSQTRPAPTLKRTTMRILI-----GLLVQNPELAPL 467
Query: 361 INSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQDN 420
+ S + K +++F +L++T + + + + +++ + + + D+
Sbjct: 468 VPS--LAALDKTKLPGLELFSELVNTC-LSQPGLTTGQLLEHYRGTKEAATLEKLSTWDD 524
Query: 421 FEYSIEIAKKTLLDAI 436
+IA+KT DA+
Sbjct: 525 IA-DKDIAEKTFTDAL 539
>gi|7767196|pdb|1DD9|A Chain A, Structure Of The Dnag Catalytic Core
gi|7767197|pdb|1DDE|A Chain A, Structure Of The Dnag Catalytic Core
Length = 338
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 31 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 90
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 91 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 138
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 139 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 198
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 199 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 258
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 259 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 289
>gi|82545321|ref|YP_409268.1| DNA primase [Shigella boydii Sb227]
gi|417683652|ref|ZP_12332999.1| DNA primase [Shigella boydii 3594-74]
gi|81246732|gb|ABB67440.1| DNA primase [Shigella boydii Sb227]
gi|332092180|gb|EGI97258.1| DNA primase [Shigella boydii 3594-74]
Length = 581
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ +Q + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQYLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|317049602|ref|YP_004117250.1| DNA primase [Pantoea sp. At-9b]
gi|316951219|gb|ADU70694.1| DNA primase [Pantoea sp. At-9b]
Length = 581
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 161/255 (63%), Gaps = 13/255 (5%)
Query: 21 FLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASSGLVVDKIINKVNQSPV 79
+L RGL++++I F +GYAP W NAL + ++ +L +G++V
Sbjct: 142 YLATRGLSQQVIDHFAIGYAPPGWDNALKRFGQQQDDRESLMEAGMLVSN---------- 191
Query: 80 IEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSNELYGLF 139
+K + YDRFR RIMFPI++ G++IGFGGR++ + + KY+NSPETP+FHK +LYGL+
Sbjct: 192 -DKGRTYDRFRDRIMFPIRDKRGRVIGFGGRVLGN-DTPKYLNSPETPIFHKGRQLYGLY 249
Query: 140 EAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNSIIFSFD 199
EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+ HI+ + T ++I +D
Sbjct: 250 EAQKNHPQPARLLVVEGYMDVVALAQFGIDYAVASLGTSTTAEHIQLLFRSTENVICCYD 309
Query: 200 GDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKVLEAMSLL 259
GD+AGR AA RALE L Y D + ++F+FLPD DPD+ +RK G F ++ +AM L
Sbjct: 310 GDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPDTLVRKEGKAAFEARMEQAMPLS 369
Query: 260 QFFLEEIILNYNLKT 274
F + ++ +L T
Sbjct: 370 TFLFDSLLPQVDLST 384
>gi|156932575|ref|YP_001436490.1| DNA primase [Cronobacter sakazakii ATCC BAA-894]
gi|156530829|gb|ABU75655.1| hypothetical protein ESA_00357 [Cronobacter sakazakii ATCC BAA-894]
Length = 581
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 138/436 (31%), Positives = 231/436 (52%), Gaps = 28/436 (6%)
Query: 7 FYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ +Q ++++ A +L KRGL+E +I RF +GYAP W N L + + N +L +
Sbjct: 126 FYRQALQAQSAEPARQYLAKRGLSESVIERFAIGYAPPGWDNVLKRFGNNSENRKSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+E + + +L+ EGYMDV+ LSQ+ VA LGTA T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEVQQSDPNPPRLLVVEGYMDVVALSQYDINYAVASLGTATTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +R+
Sbjct: 294 IQMLFRVTNNVICCYDGDRAGRSAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRQE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F ++ +A L F ++ +L T + L +P +LR +
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNNLLPQVDLSTPDGRAQLSTLALPLISQVP-GETLRIYLR 412
Query: 304 SSLS-KIIKVSFNEINNLF--KINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
L K+ + +++ L + + S + K+ I I LL+ P L
Sbjct: 413 QELGNKLGILDDSQLERLMTRQADNSQTRPAPALKRTTMRILI-----GLLVQNPELAPL 467
Query: 361 INSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQDN 420
+ S + K +++F +L++T + + + + +++ + + + D+
Sbjct: 468 VPS--LAALDKTKLPGLELFAELVNTC-LSQPGLTTGQLLEHYRGTKEAATLEKLSTWDD 524
Query: 421 FEYSIEIAKKTLLDAI 436
+IA+KT DA+
Sbjct: 525 IA-DKDIAEKTFTDAL 539
>gi|429082872|ref|ZP_19145928.1| DNA primase [Cronobacter condimenti 1330]
gi|426548398|emb|CCJ71969.1| DNA primase [Cronobacter condimenti 1330]
Length = 581
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 137/436 (31%), Positives = 232/436 (53%), Gaps = 28/436 (6%)
Query: 7 FYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ +Q ++++ A +L+KRGL+E +I RF +GYAP W N L + + N +L +
Sbjct: 126 FYRQALQAQSAEPARQYLEKRGLSESVIERFAIGYAPPGWDNVLKRFGNNSENRKSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+E + + +L+ EGYMDV+ LSQ+ VA LGTA T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEVQQSDPNPQRLLVVEGYMDVVALSQYDINYAVASLGTATTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN+++ +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +R+
Sbjct: 294 IQMLFRVTNNVVCCYDGDRAGRSAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRQE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F ++ +A L F ++ +L T + L +P +LR +
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLLPQVDLSTPDGRAQLSTLALPLISQVP-GETLRIYLR 412
Query: 304 SSLS-KIIKVSFNEINNLF--KINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
L K+ + +++ L + + S + K+ I I LL+ P L
Sbjct: 413 QELGNKLGILDDSQLERLMTRQADNSQTRPAPTLKRTTMRILI-----GLLVQNPELAPL 467
Query: 361 INSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQDN 420
+ S + K +++F +L++T + + + + +++ + + + D+
Sbjct: 468 VPS--LAALDKTKLPGLELFTELVNTC-LSQPGLTTGQLLEHYRGTKEAATLEKLSTWDD 524
Query: 421 FEYSIEIAKKTLLDAI 436
+IA+KT DA+
Sbjct: 525 IA-DKDIAEKTFTDAL 539
>gi|390435427|ref|ZP_10223965.1| DNA primase [Pantoea agglomerans IG1]
Length = 581
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 109/271 (40%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ +Q +++ A ++L +RGL+ EII F +GYAP W N L + + +L +
Sbjct: 126 FYQQGLQQSSAQPARDYLDRRGLSAEIINHFAIGYAPAGWDNVLKRFGKQSEDRESLMEA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V +K + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVSN-----------DKGRTYDRFRDRVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK +LYGL+EA + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETPIFHKGRQLYGLYEAVKNHPEPARLLVVEGYMDVVALAQYGIDYAVASLGTSTTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +AM L F + ++ +L +
Sbjct: 354 GKDAFEARMEQAMPLSSFLFDSLLPQVDLSS 384
>gi|90407544|ref|ZP_01215726.1| DNA primase [Psychromonas sp. CNPT3]
gi|90311354|gb|EAS39457.1| DNA primase [Psychromonas sp. CNPT3]
Length = 581
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 116/276 (42%), Positives = 166/276 (60%), Gaps = 14/276 (5%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNN 56
M + FY+ QL+ NS++ IN+LK RGL+ + F +GYAP+ W+ + K F
Sbjct: 123 MADITHFYQQQLRQHINSEKVINYLKGRGLSGKTAQHFKIGYAPDGWDEVRKRFATSPEQ 182
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
L G+++ K E YDRFR R+MFPI + G+++GFGGR+ D++
Sbjct: 183 EKKLIDIGMLISK---------STEGAGSYDRFRDRLMFPIYDRRGRVVGFGGRVF-DNS 232
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
E KY+NSPETPLFHK ELYGL+ K A + +L+ EGYMDV+ L+QFG VA LG
Sbjct: 233 EPKYLNSPETPLFHKGKELYGLYHVKQAYKDIPRILVVEGYMDVVALAQFGVDYAVASLG 292
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T+ HI + +++ II FDGD+AGR AA RALE L Y D + ++F+FL + DP
Sbjct: 293 TATTADHIHTLFRHSSEIICCFDGDKAGRTAAWRALENALPYLQDGRTLRFMFLEEGEDP 352
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
DS+I+K G + F V EA+ F + ++ ++
Sbjct: 353 DSFIQKKGKQHFETLVKEALPFSDFLFQHLLTQVDM 388
>gi|418294105|ref|ZP_12906006.1| DNA primase [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|379065489|gb|EHY78232.1| DNA primase [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 646
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 189/336 (56%), Gaps = 30/336 (8%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+++Y+ LK+ K A+ +LK RGL+ I F LG+AP W+ L K + D
Sbjct: 120 LAAAAEYYRHALKSHSTRKSAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHLGGDALQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
L +GL+++ N KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 QKALIDAGLLIENAENG----------KRYDRFRDRVMFPIRDSRGRVIAFGGRVLSD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ A +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARQANRDLDEIMVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGD AGR+AA RALE L D + +FLFLPD DP
Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLE-AMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ + + L +F +++ E ++E + L+
Sbjct: 349 DTLVRAEGTDAFRARIQQHSQPLADYFFQQL----------SDEADPRSLEGKAHLATLA 398
Query: 296 SSLRFKIISS-LSKIIKVSFNEINNLFKINTSSIKH 330
+ L KI + L +++ EI L N +++H
Sbjct: 399 APLIEKIPGANLRALMRQRLAEITGL---NGEALQH 431
>gi|421619279|ref|ZP_16060240.1| DNA primase [Pseudomonas stutzeri KOS6]
gi|409778748|gb|EKN58434.1| DNA primase [Pseudomonas stutzeri KOS6]
Length = 584
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 187/325 (57%), Gaps = 17/325 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNN 56
+ A+D+Y+ LK+ K A+ +LK RGL+ I F LG+AP W+ L K + D
Sbjct: 120 LAAAADYYRQALKSHPTRKAAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHLGGDPLQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ N KRYDRFR R+MFPI+++ G++I FGGR++ D +
Sbjct: 180 HKAMIDAGLLIENAENG----------KRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ A +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLYEARQANRDLDEIMVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGD AGR+AA RALE L D + +FLFLPD DP
Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLE-AMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
D+ +R G F ++ + + L +F +++ + ++++ L + IP
Sbjct: 349 DTLVRAEGTDAFRARIQQHSQPLADYFFQQLSDEADPRSLEGKAHLATLAAPLIEKIP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL 320
S+LR + L++I ++ + +
Sbjct: 408 SNLRTLMRQRLAEITGLNREALQQM 432
>gi|85058230|ref|YP_453932.1| DNA primase [Sodalis glossinidius str. 'morsitans']
gi|84778750|dbj|BAE73527.1| DNA primase [Sodalis glossinidius str. 'morsitans']
Length = 582
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 213/390 (54%), Gaps = 30/390 (7%)
Query: 5 SDFYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLA 61
S FY+ +Q + + +A ++L++RGL+E +I F +G+AP W+ ++K F + +L
Sbjct: 124 SGFYQQALQAQTASDARHYLQQRGLSEAVINHFAIGFAPPGWDNVDKRFGRSAEDRASLN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V V + + YDRFR RIMFPI++ G++I FGGR++ + + KY+
Sbjct: 184 DAGMLV-----------VNDNGRTYDRFRDRIMFPIRDKRGRVIAFGGRILGE-GQPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQRQHPELSRLLVVEGYMDVVALAQFGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+ +I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 EHIQLLYRATDRVICCYDGDRAGREAAWRALENALPYLTDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G + F K + +A L F E ++ +L + K L +P +LR
Sbjct: 352 KIGKEAFEKYIEQAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLIGQVP-GETLRLY 410
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPIC-IEYQIMK----LLISYPS 356
+ L N++ L + K K NI P I+ M+ LL+ +P
Sbjct: 411 LRQQLG-------NKLGILDDSQLEKLLPKAALKANISPQSRIKRTTMRILIGLLVQHPR 463
Query: 357 LINEINSEDMIIFSKCSQNYVKMFFQLIDT 386
L + + + + Q V +F +L+ T
Sbjct: 464 LSALVPT--VQGLEQAIQPGVPLFVELVQT 491
>gi|392980727|ref|YP_006479315.1| DNA primase [Enterobacter cloacae subsp. dissolvens SDM]
gi|392326660|gb|AFM61613.1| DNA primase [Enterobacter cloacae subsp. dissolvens SDM]
Length = 581
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ LK+S + A +L KRGL++++I RF +GYAP W N L + + + +L +
Sbjct: 126 FYQQSLKHSAAEPARQYLNKRGLSDDVIARFAIGYAPPGWDNVLKRFGGNSEDRKSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ A + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQANAEPPRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLMPQVDLST 384
>gi|416337094|ref|ZP_11673564.1| DNA primase [Escherichia coli WV_060327]
gi|320195228|gb|EFW69857.1| DNA primase [Escherichia coli WV_060327]
Length = 581
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ AM L F ++ +L T
Sbjct: 354 GKEAFEARMERAMPLSAFLFNSLMPQVDLST 384
>gi|238756615|ref|ZP_04617910.1| DNA primase [Yersinia ruckeri ATCC 29473]
gi|238705163|gb|EEP97585.1| DNA primase [Yersinia ruckeri ATCC 29473]
Length = 582
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 136/390 (34%), Positives = 207/390 (53%), Gaps = 30/390 (7%)
Query: 5 SDFYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ L +K+A +L+ RGL+E+II F +G+AP W NAL + D + L
Sbjct: 124 SAFYQQSLNSPTAKQARGYLEHRGLSEDIIRHFAIGFAPAGWDNALKRFGRDAESRTALN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTNDTGRT-----------YDRFRERVMFPIRDKRGRVIAFGGRILGDGV-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 232 NSPETEIFHKGRQLYGLYEAQVIHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+ +I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 EHIQLLFRATDQVICCYDGDRAGRDAAWRALETALPYLTDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G F +++ +A L F E ++ +L + K L +P +LR
Sbjct: 352 KEGKDAFEQRMEQAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVP-GETLRLY 410
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN-IQPICIEYQIMK----LLISYPS 356
+ L N++ L + K E N QP ++ M+ LL+ P
Sbjct: 411 LRQQLG-------NKLGILDDSQLDKLMPKLAENTNSYQPPQLKRTTMRILIGLLVQNPQ 463
Query: 357 LINEINSEDMIIFSKCSQNYVKMFFQLIDT 386
L I S + +K + + +F +L++T
Sbjct: 464 LATLIPSLQGVEQAKLAG--LPLFIELVNT 491
>gi|372275336|ref|ZP_09511372.1| DNA primase [Pantoea sp. SL1_M5]
Length = 581
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/271 (40%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ +Q +++ A ++L +RGL+ EII F +GYAP W N L + + +L +
Sbjct: 126 FYQQGLQQSSAQPARDYLDRRGLSAEIINHFAIGYAPAGWDNVLKRFGKQSEDRESLMEA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V +K + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVSN-----------DKGRTYDRFRDRVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK +LYGL+EA + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETPIFHKGRQLYGLYEAVKNHPEPARLLVVEGYMDVVALAQYGIDYAVASLGTSTTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +AM L F + ++ +L +
Sbjct: 354 GKNAFEARMEQAMPLSSFLFDSLLPQVDLSS 384
>gi|254467852|ref|ZP_05081258.1| DNA primase [beta proteobacterium KB13]
gi|207086662|gb|EDZ63945.1| DNA primase [beta proteobacterium KB13]
Length = 578
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 203/372 (54%), Gaps = 24/372 (6%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+ +K L++S+ AIN+LKKRGL + F +GYA ++W L K F +Y L ++
Sbjct: 118 ANQHFKKNLRSSELAINYLKKRGLTGTVAREFQIGYASDDWQGLKKEFENYEEP-KLQTA 176
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
GLV K+ YDRFR RI+FPI N IIGFGGR+I ++ KY NS
Sbjct: 177 GLVQKNDSGKI-----------YDRFRNRIIFPIINAKDNIIGFGGRVINKEDQPKYYNS 225
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETPLF KS E+YGL +AK I + +LI EGYMDVI L Q G VA LGTA T H
Sbjct: 226 PETPLFKKSYEVYGLPQAKKGIREDNNILIVEGYMDVISLYQHGIENAVATLGTATTIYH 285
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
+KK++ Y+ I F FDGD AG+ AA +AL + DD FLFLP+ DPD++I K
Sbjct: 286 LKKLIRYSKKITFCFDGDHAGKEAAWKALNTAVEILEDDYEFYFLFLPEGEDPDTFITKN 345
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI- 302
+ F K + A L +F ++ + +L + ++ K N E ++K I +S ++KI
Sbjct: 346 SIQDFKKYIDHATPLTEFIVKRLTEKNDLTSQENKIKFINNFEPIYKKI---NSNKYKIF 402
Query: 303 -ISSLSKIIKVSFNEINNLFKI----NTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
I ++ +I S EI + +I N SS + + + + + +L+ P L
Sbjct: 403 LIKRIADLIHFSQREIEKMMRIESAENYSSSQQIKYSPSTRNSLTAKRKYILILVMKPEL 462
Query: 358 INEINSEDMIIF 369
NS+D + F
Sbjct: 463 ---FNSDDEVFF 471
>gi|419346808|ref|ZP_13888179.1| DNA primase [Escherichia coli DEC13A]
gi|419351274|ref|ZP_13892606.1| DNA primase [Escherichia coli DEC13B]
gi|419356694|ref|ZP_13897944.1| DNA primase [Escherichia coli DEC13C]
gi|419361727|ref|ZP_13902939.1| DNA primase [Escherichia coli DEC13D]
gi|419366821|ref|ZP_13907974.1| DNA primase [Escherichia coli DEC13E]
gi|378184755|gb|EHX45391.1| DNA primase [Escherichia coli DEC13A]
gi|378197653|gb|EHX58130.1| DNA primase [Escherichia coli DEC13C]
gi|378198050|gb|EHX58523.1| DNA primase [Escherichia coli DEC13B]
gi|378201216|gb|EHX61665.1| DNA primase [Escherichia coli DEC13D]
gi|378210882|gb|EHX71232.1| DNA primase [Escherichia coli DEC13E]
Length = 581
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFP+++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPMRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|383188572|ref|YP_005198700.1| DNA primase, catalytic core [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371586830|gb|AEX50560.1| DNA primase, catalytic core [Rahnella aquatilis CIP 78.65 = ATCC
33071]
Length = 582
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 132/394 (33%), Positives = 213/394 (54%), Gaps = 30/394 (7%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S+FY+ LK A +L +RGL+E++I F +G+AP W NAL + + ++
Sbjct: 120 MAPLSEFYQQSLKQPAGAPAREYLARRGLSEDVISHFAIGFAPPGWDNALKRFGKNADDK 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+L +G++V + + YDRFR R+MFPI++ G++I FGGR++ + +
Sbjct: 180 ASLIDAGMLVTN-----------DNGRSYDRFRERVMFPIRDKRGRVIAFGGRVLGN-DT 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETEIFHKGRQLYGLYEAQLKHPTPARLLVVEGYMDVVALAQFGIDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T+ HI+ + T++I+ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 STTADHIQLMFRSTDNIVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G ++F +++ +AM L F + ++ +L + K L + +P +
Sbjct: 348 TLVRKEGKEVFEQRMEQAMPLSTFLFDSLLPQVDLSSPDGRTKLSMLALPLIRQVP-GET 406
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI-QPICIEYQIMK----LLI 352
LR + L N++ L + K E N+ Q ++ M+ LL+
Sbjct: 407 LRMYLRQQLG-------NKLGILDDSQLEKLMPKQAESSNVYQAPQLKRTTMRILIGLLV 459
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDT 386
P L I S + + Q + +F +L+ T
Sbjct: 460 QNPQLATLIPS--LQGLEQAKQPGLDLFRELVTT 491
>gi|311278025|ref|YP_003940256.1| DNA primase [Enterobacter cloacae SCF1]
gi|308747220|gb|ADO46972.1| DNA primase [Enterobacter cloacae SCF1]
Length = 581
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 168/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L ++ A +L KRGL+ E+I RF +GYAP W N L + + N +L +
Sbjct: 126 FYQQSLNQPAAEPARQYLTKRGLSSEVISRFAIGYAPPGWDNVLKRFGANPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+M+PI++ G+++GFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMYPIRDKRGRVMGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ A+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQAVAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLMPQVDLST 384
>gi|304396866|ref|ZP_07378746.1| DNA primase [Pantoea sp. aB]
gi|440757199|ref|ZP_20936388.1| DNA primase [Pantoea agglomerans 299R]
gi|304355662|gb|EFM20029.1| DNA primase [Pantoea sp. aB]
gi|436429026|gb|ELP26674.1| DNA primase [Pantoea agglomerans 299R]
Length = 581
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 130/381 (34%), Positives = 205/381 (53%), Gaps = 20/381 (5%)
Query: 7 FYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ +Q +++ A ++L +RGL+ +II F +GYAP W N L + + +L +
Sbjct: 126 FYQQGLQQSSAQPARDYLDRRGLSADIINHFAIGYAPAGWDNVLKRFGKQSEDRESLMEA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V +K + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVSN-----------DKGRTYDRFRDRVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK +LYGL+EA + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETPIFHKGRQLYGLYEAVKNHPEPARLLVVEGYMDVVALAQYGIDYAVASLGTSTTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F ++ +AM L F + ++ +L + + L IP +LR +
Sbjct: 354 GKAAFEARMEQAMPLSSFLFDSLLPQVDLSSRDGKARLSTLALPLITQIP-GETLRIYMR 412
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEINS 363
L K+ + N L K+ T ++ LLI P L + S
Sbjct: 413 QELGN--KLGILDDNQLEKLMPKQAASGTAPVAPPLKRTTMRVLIALLIQNPQLATMVPS 470
Query: 364 EDMIIFSKCSQNYVKMFFQLI 384
D + SK + +F +L+
Sbjct: 471 LDGLSESKMPG--LPLFIELV 489
>gi|294669704|ref|ZP_06734771.1| hypothetical protein NEIELOOT_01605 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308617|gb|EFE49860.1| hypothetical protein NEIELOOT_01605 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 433
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/382 (34%), Positives = 206/382 (53%), Gaps = 31/382 (8%)
Query: 37 LGYAPNEWNALNKVFLDYNNINTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFP 96
+GYAP+ W L +VF Y N N L G V+ N+ E+ + YDRFR RIMFP
Sbjct: 1 MGYAPDGWQPLAQVFQPYPN-NALTECGQVIH------NE----EQNRYYDRFRHRIMFP 49
Query: 97 IKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEG 156
I++ G++IGFGGR++ DS + KY+NSP+TPLF K LYGL+EA+NA+ +G +L+ EG
Sbjct: 50 IRDQQGRVIGFGGRVLDDS-KPKYLNSPDTPLFDKGRNLYGLYEARNAVRDAGRILVVEG 108
Query: 157 YMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCL 216
YMDV+ L+QFG VA LGT+ T HIK ++ ++ I F FDGD AGR+AA RALE L
Sbjct: 109 YMDVVALAQFGIPYAVASLGTSTTGEHIKILMRQSDEIYFCFDGDAAGRKAAWRALENAL 168
Query: 217 LYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTI 275
D K + FLFLP ++DPDSYIR G F ++ ++ L ++F + + NL T
Sbjct: 169 PQLKDGKSLNFLFLPPEHDPDSYIRAHGKTQFEDALIHQSKPLSEYFWQALSDGLNLATQ 228
Query: 276 KDIEKSKYNIEYLFKIIPLSSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIK-----H 330
+ + L I + +L F + L++++ + ++ L T + +
Sbjct: 229 EGKSRLLKTAAPLLAQI-TAPALGFLLKQRLAELVGIDPADLAVLLGQETPPRRVQAKSY 287
Query: 331 KTIEKKNIQP--ICIEYQIMKLLISYPSLINEINSEDMIIF---SKCSQNYVKMFFQLID 385
K + QP + + + ++ L+S P+ + + ++ + C N + D
Sbjct: 288 KLPRETRRQPAMLTLAQRQIRSLLSNPAWAVHVRLPEYVVLEGDTACLAN-------IAD 340
Query: 386 TIHIFKNDIDHSKFIKYLKKIN 407
I DH++ ++ + +
Sbjct: 341 FILSGSTPPDHARIWEHFRGTD 362
>gi|377579557|ref|ZP_09808523.1| DNA primase [Escherichia hermannii NBRC 105704]
gi|377539094|dbj|GAB53688.1| DNA primase [Escherichia hermannii NBRC 105704]
Length = 506
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 168/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L N+K+A +L +RGL+ ++I RF +GYAP W N L + + N +L +
Sbjct: 52 FYQQSLTQPNAKDAREYLSRRGLSADVISRFAIGYAPPGWDNVLKRFGGNDENRQSLIDA 111
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V +K + YDRFR R+MFPI++ G++IGFGGR++ D + KY+NS
Sbjct: 112 GMLVTN-----------DKGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDG-QPKYLNS 159
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 160 PETDIFHKGRQLYGLYEAQLSSPEPARLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 219
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +RK
Sbjct: 220 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMNDGRQLRFMFLPDGEDPDTLVRKE 279
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 280 GKDAFEARMEQAQPLSTFLFNSLMPQVDLST 310
>gi|54295202|ref|YP_127617.1| DNA primase [Legionella pneumophila str. Lens]
gi|53755034|emb|CAH16522.1| DNA primase [Legionella pneumophila str. Lens]
Length = 578
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/374 (36%), Positives = 208/374 (55%), Gaps = 33/374 (8%)
Query: 1 MICASDFYKIQLK-NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINT 59
M S +Y+ +LK N + AI++L+ RGL+ EI R++LGYAP W+ L K F NN
Sbjct: 116 MSEVSQYYQKKLKYNGQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNLEKTF--PNNQRE 173
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L S+G+++ K+ YDR+R RIMFPI + +G++IGFGGRL+ + K
Sbjct: 174 LLSTGMLIKSDEGKI-----------YDRYRNRIMFPIHDRNGRVIGFGGRLLDKDQKPK 222
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPET LF KS ELYGL + + + +++ EGYMDVI L+Q G VA LGTA
Sbjct: 223 YLNSPETVLFQKSRELYGLHQVLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 282
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
++ HI+ + +T +IF FDGD AG++AA RALE L + F+FLP+++DPDS
Sbjct: 283 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 342
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIE-YLFKIIPLSSSL 298
+R G F + + +A L +FF + + + NL + ++ YL K++ S
Sbjct: 343 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMV--EGSY 400
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS----- 353
+ +I LS++ + + + NL I K+ K +Q I +++ I+
Sbjct: 401 KQLLIDDLSRLTHIESHRLTNL-------ITDKSESKPEVQ-AAISRSPLRIAIALLLQK 452
Query: 354 ---YPSLINEINSE 364
YP+ I +IN +
Sbjct: 453 PEIYPAAIQQINPD 466
>gi|420322027|ref|ZP_14823851.1| DNA primase [Shigella flexneri 2850-71]
gi|391246436|gb|EIQ05697.1| DNA primase [Shigella flexneri 2850-71]
Length = 581
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ + M L F ++ +L T
Sbjct: 354 GKEAFEARMEQGMPLSAFLFNSLMPQVDLST 384
>gi|357403479|ref|YP_004915403.1| DNA primase [Methylomicrobium alcaliphilum 20Z]
gi|351716144|emb|CCE21795.1| DNA primase [Methylomicrobium alcaliphilum 20Z]
Length = 574
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 128/369 (34%), Positives = 204/369 (55%), Gaps = 35/369 (9%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
FY QL + K+AI++LK+RG++ I + LGYAP WN L F N L +G
Sbjct: 126 FYAEQLVSGDGKKAIDYLKRRGVSGAIAKAYQLGYAPEGWNTLASRF----NFEALTKAG 181
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+V K E YDRFRGR+MFPI++ G+++GFG R++ DS KY+NSP
Sbjct: 182 LLVSK-----------EGGGGYDRFRGRVMFPIRDKRGRVVGFGARVLDDSL-PKYLNSP 229
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ETP+F K NE+YGL+E + +L+ EGYMDV+ L+QFG VA LGT+ + H+
Sbjct: 230 ETPIFSKGNEVYGLYELLQTHSRPERILVVEGYMDVVALAQFGIGYAVATLGTSTSKAHM 289
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + +++ ++F FDGD+AG+ AA RA+E D + +K + LP+ DPDS IR+ G
Sbjct: 290 ELLFRFSSELVFCFDGDKAGKEAAWRAMEATFPCLKDGRQVKIMLLPEGQDPDSLIREEG 349
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKD----IEKSKYNIEYLFKIIPLSSSLRF 300
F + + A +L ++F + +L++++ I +SK +E L + + + +
Sbjct: 350 VAAFERGIASAATLSEYFFGRVQDELSLESMEGRAQLISRSKKYLEQL--PVGVFREMMY 407
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTI---EKKNIQPICIEYQIMKLLISYPSL 357
+ + LS FN+++ L T S K +KK + P + + LL+ P L
Sbjct: 408 QRLQGLS-----GFNKLDVLENTATLSRVPKAAVHRDKKRLSPARV---AISLLLQNPEL 459
Query: 358 INEINSEDM 366
I + +++
Sbjct: 460 IEVVEQKEL 468
>gi|253991032|ref|YP_003042388.1| DNA primase [Photorhabdus asymbiotica]
gi|253782482|emb|CAQ85646.1| DNA primase [Photorhabdus asymbiotica]
Length = 581
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 184/309 (59%), Gaps = 16/309 (5%)
Query: 7 FYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L S ++A +L +RGL+EE+I RF++G+AP W N L + + L +
Sbjct: 126 FYQNSLNTSAAQQARQYLAQRGLSEEVIHRFSIGFAPAGWDNTLKRFARNAEERQQLNDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V + + YDRFR R+MFPI++ G++I FGGR++ D+ KY+NS
Sbjct: 186 GMLVAN-----------DNGRTYDRFRERVMFPIRDRRGRVIAFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+E + + ++ +L+ EGYMDV+ L+QFG VA LGT+ TS H
Sbjct: 234 PETEIFHKGRQLYGLYEVQKSHKELSQLLVVEGYMDVVALAQFGIDYAVASLGTSTTSEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPDS +RK
Sbjct: 294 IQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPDSLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G K F +++ ++ +L +F E ++ +L + + K L IP +LR +
Sbjct: 354 GRKAFEQRMEQSHTLSEFLFESLLPQVDLSSPEGKTKLSSLSVPLINQIP-GETLRLYMR 412
Query: 304 SSLSKIIKV 312
L +I +
Sbjct: 413 QELGNMIGI 421
>gi|448243975|ref|YP_007408028.1| DNA primase [Serratia marcescens WW4]
gi|445214339|gb|AGE20009.1| DNA primase [Serratia marcescens WW4]
Length = 582
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 130/394 (32%), Positives = 210/394 (53%), Gaps = 38/394 (9%)
Query: 5 SDFYKIQLKNSK--EAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ L+ S A N+L++RGL++++I F +G+AP W NAL + D ++ L
Sbjct: 124 SAFYQQSLQQSSGAPARNYLQQRGLSDDVIRHFAIGFAPAGWDNALKRFGRDADSRRALN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V ++ + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIAFGGRVLGDGM-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 232 NSPETEVFHKGRQLYGLYEAQQNHPTLQRLLVVEGYMDVVALAQFGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T++++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 EHIQLLFRATDNVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G + F +++ +A L F E ++ +L + K L +P +LR
Sbjct: 352 KEGKEAFEQRMEQAQPLSTFLFESLLPQVDLSSPDGRAKLSTLALPLITQVP-GETLRLY 410
Query: 302 IISSL---------SKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
+ L S++ K+ + N +K T+ ++ LL+
Sbjct: 411 LRQELGNKLGLLDDSQLDKLMPKQAENANPYQAPQLKRTTMRI-----------LIGLLV 459
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDT 386
P L I S + + + Q + +F +L+ T
Sbjct: 460 QNPQLATLIPSLEGL--EQTKQAGLPLFVELVQT 491
>gi|419864344|ref|ZP_14386805.1| DNA primase [Escherichia coli O103:H25 str. CVM9340]
gi|388340328|gb|EIL06574.1| DNA primase [Escherichia coli O103:H25 str. CVM9340]
Length = 581
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALVQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|408373889|ref|ZP_11171581.1| DNA primase [Alcanivorax hongdengensis A-11-3]
gi|407766177|gb|EKF74622.1| DNA primase [Alcanivorax hongdengensis A-11-3]
Length = 627
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/320 (38%), Positives = 186/320 (58%), Gaps = 17/320 (5%)
Query: 4 ASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINT 59
A FY QL+ + E A+++LK RGL+ EI RF LG+AP + N + + L +
Sbjct: 123 AETFYAQQLRQAPERQKAVSYLKNRGLSGEIAKRFALGFAPPGFDNLITGLSLTDAGLEQ 182
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
++GL+V + + + YD+FR RI+FPI++T G+ IGFGGR++ D + K
Sbjct: 183 ALTAGLLVRRE----------DTGRTYDKFRDRIIFPIRDTRGRTIGFGGRVLGD-GKPK 231
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGL+E + + ++S + + EGYMDVI L+Q G VA LGTA
Sbjct: 232 YLNSPETPVFHKGQELYGLWEWRQSRDRSDRLYVVEGYMDVIALAQHGVPNVVATLGTAT 291
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T H +K+ N +I FDGDQAG RAA RALE L D K ++FLFLPD DPD+
Sbjct: 292 TEDHARKLFRQVNEVILCFDGDQAGVRAAWRALESLLPALDDGKQVRFLFLPDGEDPDTL 351
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK-SKYNIEYLFKII-PLSSS 297
+R G + +A +L + + +L+T+ + ++ + YL K P+ +
Sbjct: 352 VRNQGPEALRALTDKADALSTYLFRHLAEGLDLETVDGRARLARLALPYLDKPAGPVYRA 411
Query: 298 LRFKIISSLSKIIKVSFNEI 317
L + +S L+++ K S ++
Sbjct: 412 LLAEELSRLTRLDKESLAQL 431
>gi|297180104|gb|ADI16327.1| DNA primase (bacterial type) [uncultured bacterium HF130_01F24]
Length = 606
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/282 (42%), Positives = 168/282 (59%), Gaps = 11/282 (3%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNN 56
+ S FY+IQL+ + A+ +LK RGL + F +G+AP W+ L K F +
Sbjct: 119 LSSTSAFYQIQLRKHPQKEAAVQYLKSRGLTGNVAASFAIGFAPPGWDNLLKEFGPSAES 178
Query: 57 INTLASSGLVV----DKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLI 112
N L +GL + DK NK+ I +Y YDRFR RI+FPI+++ G+ I FGGR++
Sbjct: 179 QNLLLGAGLTIERSKDKPSNKMQNR--INEYDYYDRFRNRIIFPIRDSRGRTIAFGGRVL 236
Query: 113 KDSNEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTV 172
+ + KY+NSPET +F KS+ELYGL+E K + EK +++ EGYMDVI LSQ G +V
Sbjct: 237 GE-EKPKYLNSPETAVFQKSSELYGLYELKKSGEKFSKIILVEGYMDVIALSQMGIKNSV 295
Query: 173 AILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPD 232
A LGTA S H+ KI +IF FDGD AG +AA RALE L + D + +KFLFLP+
Sbjct: 296 ATLGTATNSRHLGKIFKQVPELIFCFDGDDAGEKAAWRALETALPHMQDGRQVKFLFLPN 355
Query: 233 KYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
DPD+Y+R G + F +V A L F E + + + T
Sbjct: 356 GEDPDTYVRTIGKRQFLIEVSSAKPLEDFLFEHLSADLDTTT 397
>gi|293416505|ref|ZP_06659144.1| DNA primase [Escherichia coli B185]
gi|291431861|gb|EFF04844.1| DNA primase [Escherichia coli B185]
Length = 581
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYG +EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGFYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|294634614|ref|ZP_06713148.1| DNA primase [Edwardsiella tarda ATCC 23685]
gi|451966364|ref|ZP_21919617.1| DNA primase [Edwardsiella tarda NBRC 105688]
gi|291091944|gb|EFE24505.1| DNA primase [Edwardsiella tarda ATCC 23685]
gi|451314665|dbj|GAC64979.1| DNA primase [Edwardsiella tarda NBRC 105688]
Length = 582
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/390 (32%), Positives = 216/390 (55%), Gaps = 26/390 (6%)
Query: 2 ICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTL 60
+C+ ++ + +A ++L RG+++ I+ RF +GYAP W NAL + + L
Sbjct: 123 LCSYYQQALRQPGATQAQSYLAGRGMSQAIMDRFAIGYAPPGWDNALKRFGREAAGRLAL 182
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+G++V+ + + YDRFR RIM PI++ G++I FGGR++ + KY
Sbjct: 183 NDAGMLVNN-----------DNGRSYDRFRDRIMIPIRDKRGRVIAFGGRVLGNGT-PKY 230
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPET +FHK +L+GL+EA + +L+ EGYMDVI L+Q+G TVA LGT+ T
Sbjct: 231 LNSPETEIFHKGRQLFGLYEALQHAPQPARLLVVEGYMDVIALAQYGINYTVASLGTSTT 290
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ HI+ + +T+S++ +DGD AGR AA RALE L Y +D + +KF+FLPD DPD+ +
Sbjct: 291 AEHIQLLFRHTDSVVCCYDGDNAGREAAWRALETALPYLSDGRQLKFMFLPDGEDPDTLV 350
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
RK G F +++ A L F + ++ +L T K L +P +LR
Sbjct: 351 RKEGTDAFEQRMNAAHPLSTFLFDTLLPQVDLSTPDGRAKLSALALPLIGQVP-GETLRL 409
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISY----PS 356
+ +L + K+ + + L K+ + + KN QP ++ M++LI+ P+
Sbjct: 410 YLRQALGQ--KLGILDDSQLEKL----LPQRNPAVKNYQPPRLKPTTMRILIALLVQNPA 463
Query: 357 LINEINSEDMIIFSKCSQNYVKMFFQLIDT 386
L +E+ + + + + + + +F +L++T
Sbjct: 464 LASEVPTLEGL--RQHALPGLPLFIELVET 491
>gi|407791431|ref|ZP_11138515.1| DNA primase [Gallaecimonas xiamenensis 3-C-1]
gi|407200222|gb|EKE70232.1| DNA primase [Gallaecimonas xiamenensis 3-C-1]
Length = 580
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 195/355 (54%), Gaps = 15/355 (4%)
Query: 12 LKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLASSGLVVDKI 70
LK A+++LK RGL+ +I+ +F +G+ P+EW+++ KVF + L +G++V
Sbjct: 131 LKGHPAAVDYLKGRGLSGDIVKQFGIGFVPDEWDSVLKVFGTSFERQQLLMDTGMLVQN- 189
Query: 71 INKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFH 130
EK +RYDRFR RIMFPI++ G+ I FGGR++ D KY+NSPET ++H
Sbjct: 190 ----------EKGRRYDRFRDRIMFPIRDRRGRTIAFGGRVLGDGT-PKYLNSPETRIYH 238
Query: 131 KSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFY 190
K +ELYGL+EA+ A + +++ EGYMDV+ L Q G VA LGT+ TS ++ +
Sbjct: 239 KGSELYGLYEARQANRELERLVVVEGYMDVVALFQAGISYAVASLGTSTTSDQLELLFRS 298
Query: 191 TNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSK 250
+I +DGD+AGR AA RA+E L D + +KF+FL D DPDS +RK G F
Sbjct: 299 APEVICCYDGDRAGREAAWRAMENALPLLRDGRTLKFIFLADGEDPDSMVRKEGKDAFET 358
Query: 251 KVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIISSLSKII 310
+ A+ L QF +E+ + ++ + + L +P S R + SL+K +
Sbjct: 359 ALAGALPLSQFLFQELEKSIDMGSPDSRSRLAEKAVPLLDRLP-DSVYRVMLRESLAKRL 417
Query: 311 KVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEINSED 365
V+ ++ + + + K +P + I +L+ +P+L+ E+ D
Sbjct: 418 GVAEEQLERFVAKAPAKAQVAQFKGKAGRPPLMRLTIA-ILVQHPALVTELPDMD 471
>gi|392552469|ref|ZP_10299606.1| DNA primase [Pseudoalteromonas spongiae UST010723-006]
Length = 581
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 141/392 (35%), Positives = 220/392 (56%), Gaps = 32/392 (8%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M+ + FY+ QLK NS + I +LK RGL+ E +F +GYAP+EW+++ K F
Sbjct: 121 MMHVAKFYQHQLKHHANSPQVIEYLKGRGLSGETAKQFMIGYAPSEWDSVCKTFAK---- 176
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLI-KDSN 116
N + L+ K+ ++ + +++D FR R+MFPI++ G++I FGGR++ D N
Sbjct: 177 NQDSKKQLLELKLASEKSAG------RQFDFFRDRLMFPIRDKRGRVIAFGGRIMNSDDN 230
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET +FHK ELYGL+EAK+A +K +L+ EGYMDV+ L++ G VA LG
Sbjct: 231 GPKYLNSPETRIFHKGFELYGLYEAKHANKKLEQILVVEGYMDVVALAEKGINYAVAALG 290
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T HI + T+ II +DGD+AGR AA RALE L Y K ++F+FLPD DP
Sbjct: 291 TATTPEHIHTLFRTTDRIICCYDGDRAGRDAAWRALENALPYLNHGKSLEFVFLPDGEDP 350
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL-- 294
DS ++K G + F + +A + + + NL T D KSK L + +PL
Sbjct: 351 DSLVQKEGREAFELRYDDATDFSVYLFDRLAQEINLTT--DAGKSK----LLQQALPLIE 404
Query: 295 ---SSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLL 351
S + ++ L+++I + ++ KINT + +K I P+ + + LL
Sbjct: 405 KVPSDYYQDNLLDKLARLIGRTRAQLQK--KINTPKQQQGLAKKFKITPM---RRAIGLL 459
Query: 352 ISYPSLINEINSEDMIIFSKCSQNYVKMFFQL 383
+ +P L +E+ + + ++ +K+F QL
Sbjct: 460 LQHPELASEVPFQPEL--AQMDVPGIKLFIQL 489
>gi|422618504|ref|ZP_16687201.1| DNA primase, partial [Pseudomonas syringae pv. japonica str.
M301072]
gi|330898881|gb|EGH30300.1| DNA primase, partial [Pseudomonas syringae pv. japonica str.
M301072]
Length = 528
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 184/323 (56%), Gaps = 17/323 (5%)
Query: 5 SDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNNINTL 60
DF+ LK+ K A+++LK RGL+ EI F LG+AP W+ L K + D +
Sbjct: 1 PDFHSQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQQKVM 60
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GL+++ E KRYDRFR R+MFPI+++ G++I FGGR++ D ++ KY
Sbjct: 61 IDAGLLIENA----------ETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGD-DKPKY 109
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LGTA +
Sbjct: 110 LNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATS 169
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H+K++ +++F FDGDQAGR AA RALE L D + +FLFLP+ DPD+ +
Sbjct: 170 EEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDPDTLV 229
Query: 241 RKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
R G F ++ A L +F E++ + ++++ L +P ++LR
Sbjct: 230 RSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVP-GANLR 288
Query: 300 FKIISSLSKIIKVSFNEINNLFK 322
+ L++I ++ ++ L +
Sbjct: 289 ILMRQRLTEITGLTGEAVSQLVQ 311
>gi|422007704|ref|ZP_16354690.1| DNA primase [Providencia rettgeri Dmel1]
gi|414097594|gb|EKT59249.1| DNA primase [Providencia rettgeri Dmel1]
Length = 581
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/351 (37%), Positives = 204/351 (58%), Gaps = 24/351 (6%)
Query: 7 FYKIQLKNSK--EAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY L +S +A ++L +RGL+ EII F++G+AP W N L K ++ + L +
Sbjct: 126 FYCAALSHSSANKAKDYLSQRGLSAEIIEHFSIGFAPAGWDNLLKKFAVNPESRKQLDDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V +V YDRFR R+MFPI++ G++I FGGR++ D+ KY+NS
Sbjct: 186 GMLVTNDNGRV-----------YDRFRERVMFPIRDRRGRVIAFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +L+GL+EA + +L+ EGYMDV+ L+Q+ VA LGT+ TS H
Sbjct: 234 PETDIFHKGRQLFGLYEATQNSNELSKLLVVEGYMDVVALAQYDIRYAVASLGTSTTSEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPDS +RK
Sbjct: 294 IQLLYRSTDTVICCYDGDRAGREAAWRALETALPYLTDGRQLRFMFLPDGEDPDSLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK-SKYNIEYLFKIIPLSSSLRFKI 302
G F +++ +A +L F + ++ +LKT + K SK I L K IP +LR +
Sbjct: 354 GKDAFEQRMKDAQTLSAFLFDSLVPQVDLKTQEGKAKFSKLAIP-LIKQIP-GETLRLYM 411
Query: 303 ISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
L I + +I+ + + I ++ E+ N Q ++ M++LI+
Sbjct: 412 AQELGNFIGIP--DISQVLAM----IDRESTEQVNYQAPKLKPTTMRILIA 456
>gi|417709118|ref|ZP_12358143.1| DNA primase [Shigella flexneri VA-6]
gi|420333006|ref|ZP_14834652.1| DNA primase [Shigella flexneri K-1770]
gi|332998669|gb|EGK18265.1| DNA primase [Shigella flexneri VA-6]
gi|391247865|gb|EIQ07110.1| DNA primase [Shigella flexneri K-1770]
Length = 581
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R++FPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVIFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>gi|429101729|ref|ZP_19163703.1| DNA primase [Cronobacter turicensis 564]
gi|426288378|emb|CCJ89816.1| DNA primase [Cronobacter turicensis 564]
Length = 581
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 167/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ +Q ++ + A ++L KRGL++ +I RF +GYAP W NAL + + N +L +
Sbjct: 126 FYRQALQAQSGEPARHYLAKRGLSDSVIERFAIGYAPPGWDNALKRFGNNSENRKSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V + + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DNGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+E + +L+ EGYMDV+ LSQ+ VA LGTA T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEVQQNDPNPPRLLVVEGYMDVVALSQYDINYAVASLGTATTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +R+
Sbjct: 294 IQMLFRATNTVICCYDGDRAGRSAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRQE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLLPQVDLST 384
>gi|400405595|ref|YP_006588454.1| DNA primase, catalytic core [secondary endosymbiont of Ctenarytaina
eucalypti]
gi|400363958|gb|AFP85026.1| DNA primase, catalytic core [secondary endosymbiont of Ctenarytaina
eucalypti]
Length = 582
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 146/451 (32%), Positives = 236/451 (52%), Gaps = 31/451 (6%)
Query: 5 SDFYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTLA 61
S FY+ +Q + + A +L+ RGL+E +I RF +G+AP W+ + K F + + N L
Sbjct: 124 SSFYQQALQSRTANLAKKYLQYRGLSETVITRFAIGFAPAGWDNIIKHFGQSSADCNALN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKR-YDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
++G+V I Y R YDRFR RIMFPI++ G++I FGGR++ D + KY
Sbjct: 184 NAGMVA------------ISDYGRAYDRFRERIMFPIRDMRGRVIAFGGRILGDE-QPKY 230
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+N PET +F+KS LYGL+EAK +L+ EGYMDV+ LSQFG VA LGT+ T
Sbjct: 231 LNCPETEIFYKSRHLYGLYEAKKQYPTLPRMLVVEGYMDVVSLSQFGIHYVVASLGTSTT 290
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ H++ + T+ +I +DGD AGRRAA RALE L + D + + F+FLP+ DPD+ +
Sbjct: 291 ADHMQVLYRLTDQVICCYDGDNAGRRAAWRALENVLPHLNDGRQLNFMFLPEGEDPDTLV 350
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
RK G K F ++ +A+ L +F E +I +L K L IP +LR
Sbjct: 351 RKIGKKAFENRIEQAIPLSRFLFETLIPQVDLSNPDGRAKLSTLALPLIGQIP-GETLRL 409
Query: 301 KIISSLSKIIK-VSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLIN 359
+ L + + N++ L +++K + I+ + ++ LL+ YP L
Sbjct: 410 YLRQKLGNTLGLLDDNQLERLAP--QAALKKHIRTRPGIKRTTMRI-LIGLLVQYPQLSA 466
Query: 360 EI-NSEDMIIFSKCSQNYVKMFFQLIDTIHIFKN-----DIDHSKFIKYLKKINKNFESI 413
+ N +D+ + Q V +F +L+ T ++H + ++ ++N
Sbjct: 467 LVPNVQDL---EQSKQLGVPLFIELVQTCQAGSGLTTGQLLEHYRETQFSSQLNTLATWN 523
Query: 414 IVKIQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
+ I + E + + L D+I +DR+ +
Sbjct: 524 HMIIDETVEATFLDTLENLYDSILEDRQEAL 554
>gi|152963815|gb|ABS50235.1| DNA primase [Erwinia amylovora]
Length = 389
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 175/281 (62%), Gaps = 15/281 (5%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M DF++ L S A ++L +RGL++E++ F++G+AP W NAL + + ++
Sbjct: 120 MTGLRDFFQQSLTQGPSAGARDYLAQRGLSDEVVKHFSIGFAPAGWDNALKRFGSNPDDR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+L +G++V ++ + YDRFR R+MFPI + G++IGFGGR++ D
Sbjct: 180 QSLIDAGMLVTN-----------DQGRSYDRFRERVMFPIHDKRGRVIGFGGRVLGDGM- 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+EA + G +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETEIFHKGRQLYGLYEALKNYPEPGKLLVVEGYMDVVALAQFGVDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T+ HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 STTAEHIQLLFRSTDTVICYYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDI 278
+ +RK G + F ++ +AM L F + ++ +L++ + +
Sbjct: 348 TLVRKEGKEAFEARMEQAMPLSTFLFDTLMPQVDLRSPQSL 388
>gi|390952272|ref|YP_006416031.1| DNA primase, catalytic core [Thiocystis violascens DSM 198]
gi|390428841|gb|AFL75906.1| DNA primase, catalytic core [Thiocystis violascens DSM 198]
Length = 582
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/267 (42%), Positives = 167/267 (62%), Gaps = 17/267 (6%)
Query: 4 ASDFYKIQLKNSKEA---INFLKKRGLNEEIILRFNLGYAPNEWN-ALNKVFLDYNNINT 59
A+ Y+ QL+ EA +++LK RGL EI R++LG+AP ++ L+++
Sbjct: 120 AAILYRQQLREHAEASRAVDYLKGRGLTGEIAARYDLGFAPPGYDFLLSRLGAGAIERER 179
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L + GL+ + + +RYDRFR RIMFPI++ G++IGFGGRL+ + + K
Sbjct: 180 LMTCGLIAE------------QDGRRYDRFRDRIMFPIRDRRGRVIGFGGRLLGE-GKPK 226
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGLFEA+ A K +L+ EGY+DVI L+QFG VA LGTA
Sbjct: 227 YLNSPETPVFHKGRELYGLFEAQQANRKLTSLLVVEGYLDVIALAQFGIGNAVATLGTAT 286
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T H++ +L +IF FDGD+AGR AA +ALE L T + I+FLFLP+ DPD+
Sbjct: 287 TPEHLQLLLRTVPELIFCFDGDRAGRAAAWKALETALPLVTGHQSIRFLFLPEGDDPDTL 346
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEI 266
+R+ G F+ ++ +A L +F ++ +
Sbjct: 347 VRREGADGFAARLEKAFPLSEFLIDHL 373
>gi|444354645|ref|YP_007390789.1| DNA primase (EC 2.7.7.-) [Enterobacter aerogenes EA1509E]
gi|443905475|emb|CCG33249.1| DNA primase (EC 2.7.7.-) [Enterobacter aerogenes EA1509E]
Length = 581
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 167/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L ++ A +L KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLNQPAAEPARQYLAKRGLSSEVITRFAIGFAPPGWDNVLKRFGGNQENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPQRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN +I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNQVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +A L F ++ +L T
Sbjct: 354 GKEAFEARMEQAQPLSTFLFNSLMPQVDLST 384
>gi|384082651|ref|ZP_09993826.1| DNA primase [gamma proteobacterium HIMB30]
Length = 630
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/298 (40%), Positives = 177/298 (59%), Gaps = 16/298 (5%)
Query: 14 NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLASSGLVVDKIIN 72
N + A+N+LK RGL I RF LGYAP+ W L +++ + L +GL V
Sbjct: 132 NRERAVNYLKGRGLTGLIAHRFGLGYAPDGWRFLFDQLGTESQTKKQLLDAGLTV----- 186
Query: 73 KVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKS 132
V + + YDRFR R+MFPI++ G+ I FGGR++ D ++ KY+NSPET LFHKS
Sbjct: 187 ------VNSQGREYDRFRERVMFPIRDIRGRTIAFGGRVL-DESKPKYLNSPETKLFHKS 239
Query: 133 NELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTN 192
+ LYGL+EA+ A VL+ EGYMDV+ L+QFG VA LGTA T H+ ++ T
Sbjct: 240 DTLYGLYEARQACRSLDRVLVVEGYMDVVALAQFGIDFAVATLGTALTGQHLDRLSRQTA 299
Query: 193 SIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKV 252
+I FDGDQAGR AA+RAL+ L + +D+ I+FLFLPD +DPDS +R G F ++
Sbjct: 300 QVIVCFDGDQAGRTAAKRALDTMLPFLSDEFSIRFLFLPDGHDPDSLVRDEGTDAFLSRL 359
Query: 253 LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSL-RFKIISSLSKI 309
EA+ + + + ++ I +++ L KI + +S+ R ++ SLS++
Sbjct: 360 NEALPASEALIGLLADEVDMTKIDG--RARLTALALPKIAKIPTSIYRSLMLDSLSEL 415
>gi|417385715|ref|ZP_12150702.1| DNA primase [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|417393631|ref|ZP_12156084.1| DNA primase [Salmonella enterica subsp. enterica serovar Minnesota
str. A4-603]
gi|417482868|ref|ZP_12172111.1| DNA primase [Salmonella enterica subsp. enterica serovar Rubislaw
str. A4-653]
gi|353605048|gb|EHC59667.1| DNA primase [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353608164|gb|EHC61826.1| DNA primase [Salmonella enterica subsp. enterica serovar Minnesota
str. A4-603]
gi|353635123|gb|EHC81527.1| DNA primase [Salmonella enterica subsp. enterica serovar Rubislaw
str. A4-653]
Length = 507
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 50 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 109
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 110 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 157
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 158 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 217
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 218 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 277
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 278 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 310
>gi|417343853|ref|ZP_12124341.1| DNA primase [Salmonella enterica subsp. enterica serovar Baildon
str. R6-199]
gi|357954901|gb|EHJ80896.1| DNA primase [Salmonella enterica subsp. enterica serovar Baildon
str. R6-199]
Length = 598
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 141 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 200
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 201 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 248
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 249 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 308
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 309 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 368
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 369 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 401
>gi|308188145|ref|YP_003932276.1| DNA primase [Pantoea vagans C9-1]
gi|308058655|gb|ADO10827.1| DNA primase [Pantoea vagans C9-1]
Length = 581
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ +Q +++ A ++L +RGL+ +II F +GYAP W N L + + +L +
Sbjct: 126 FYQQGLQQSSAQPARDYLDRRGLSADIINHFAIGYAPAGWDNVLKRFGKQSEDRESLMEA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V +K + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVSN-----------DKGRTYDRFRDRVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PETP+FHK +LYGL+EA + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETPIFHKGRQLYGLYEAVKNHPEPARLLVVEGYMDVVALAQYGIDYAVASLGTSTTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +AM L F + ++ +L +
Sbjct: 354 GKAAFEARMEQAMPLSSFLFDSLLPQVDLSS 384
>gi|386286956|ref|ZP_10064136.1| DNA primase [gamma proteobacterium BDW918]
gi|385279995|gb|EIF43927.1| DNA primase [gamma proteobacterium BDW918]
Length = 621
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/372 (34%), Positives = 207/372 (55%), Gaps = 27/372 (7%)
Query: 5 SDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTL 60
+ +Y+ QL+ ++ A+++LK+RGL+ I F++G+AP W+ L K D + L
Sbjct: 126 ASYYQQQLREHPQAQRAVDYLKQRGLSGRIARDFDIGFAPPGWDNLLKTLGDSEEHRQQL 185
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
G++++K K+ YDRFR RIMFPI++ G++I FGGR++ D ++ KY
Sbjct: 186 IDGGMLIEKDDGKL-----------YDRFRDRIMFPIRDNRGRVIAFGGRVLGD-DKPKY 233
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPET +FHK ELYGL++A+ +L+ EGYMDV+ L+Q G + +A LGTA
Sbjct: 234 LNSPETDIFHKGKELYGLYQARQNNRHLEQLLVVEGYMDVVALAQHGIMTGIATLGTASN 293
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ H++ Y + +IF FDGD AGR+AA RALE L D + I+FLFLP+ DPDS +
Sbjct: 294 TEHLRTAFRYASELIFCFDGDTAGRKAAERALENALPTMEDGRRIRFLFLPEGDDPDSVV 353
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK-SKYNIEYLFKIIPLSSSLR 299
+ G F K + +A L ++F E + T++ + SK + L + P R
Sbjct: 354 NRDGAAGFQKLLAQAQPLERYFFESFHSQTDPNTLEGKARLSKLALPMLQLLPP--GVFR 411
Query: 300 FKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS-YPSLI 358
++ SL++ +S + ++ L ++ + T E + P+ + K L++ PS
Sbjct: 412 QLMLDSLAERTGLSRHALDQL--LDDTKPASPTPETSSRPPVAPSTRSTKKLVANLPS-- 467
Query: 359 NEINSEDMIIFS 370
S D ++F+
Sbjct: 468 ---TSRDPMLFA 476
>gi|453063602|gb|EMF04581.1| DNA primase [Serratia marcescens VGH107]
Length = 582
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/394 (33%), Positives = 210/394 (53%), Gaps = 38/394 (9%)
Query: 5 SDFYKIQLKNSK--EAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ L+ S A N+L++RGL++++I F +G+AP W NAL + D ++ L
Sbjct: 124 SAFYQQSLQQSSGAPARNYLQQRGLSDDVIRHFAIGFAPAGWDNALKRFGRDADSRRALN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V ++ + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIAFGGRVLGDGM-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 232 NSPETEVFHKGRQLYGLYEAQQNHPTLQRLLVVEGYMDVVALAQFGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T++++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 EHIQLLFRATDNVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G + F +++ A L F E ++ +L + K L +P +LR
Sbjct: 352 KEGKEAFEQRMEHAQPLSTFLFESLLPQVDLSSPDGRAKLSTLALPLITQVP-GETLRLY 410
Query: 302 IISSL---------SKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
+ L S++ K+ + N +K T+ ++ LL+
Sbjct: 411 LRQELGNKLGLLDDSQLDKLMPKQAENANPYQAPQLKRTTMRI-----------LIGLLV 459
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDT 386
P L I S + + +K Q + +F +L+ T
Sbjct: 460 QNPQLATLIPSLEGLEQTK--QAGLPLFVELVQT 491
>gi|238910013|ref|ZP_04653850.1| DNA primase [Salmonella enterica subsp. enterica serovar Tennessee
str. CDC07-0191]
Length = 580
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 352 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 384
>gi|261344811|ref|ZP_05972455.1| DNA primase [Providencia rustigianii DSM 4541]
gi|282567258|gb|EFB72793.1| DNA primase [Providencia rustigianii DSM 4541]
Length = 581
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/351 (37%), Positives = 202/351 (57%), Gaps = 24/351 (6%)
Query: 7 FYKIQLKNSK--EAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY L +S +A ++L +RGL+ EII F++G+AP W N L K ++ + L +
Sbjct: 126 FYCAALNHSSANKAKDYLSQRGLSPEIIAHFSIGFAPAGWDNLLKKFAVNPESRQQLDEA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V +V YDRFR R+MFPI++ G++I FGGR++ D KY+NS
Sbjct: 186 GMLVTNDNGRV-----------YDRFRDRVMFPIRDRRGRVIAFGGRVLGDG-VPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +L+GL+EA + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLFGLYEATQNSSELAKLLVVEGYMDVVALAQYDIRYAVASLGTSTTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+++I +DGD+AGR AA RALE L Y TD + I+F+FLPD DPDS +RK
Sbjct: 294 IQLLYRSTDTVICCYDGDRAGREAAWRALENALPYLTDGRQIRFMFLPDGEDPDSLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK-SKYNIEYLFKIIPLSSSLRFKI 302
G F +++ A+SL F + ++ +LKT + K SK I L K IP +LR +
Sbjct: 354 GKDAFEQRMENALSLSTFLFDSLVPQVDLKTQEGRAKISKLAIP-LIKQIP-GETLRLYM 411
Query: 303 ISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
L I + +I+ + + I + E+ N Q ++ M++LI+
Sbjct: 412 AQELGNFIGIP--DISQVLAM----IDRENTEQINYQAPKLKPTTMRILIA 456
>gi|237729994|ref|ZP_04560475.1| DNA primase [Citrobacter sp. 30_2]
gi|226908600|gb|EEH94518.1| DNA primase [Citrobacter sp. 30_2]
Length = 581
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 168/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKNSK--EAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L S A +L+KRGL+ ++I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLMQSAATPARQYLEKRGLSSDVITRFAIGFAPPGWDNVLKRFGGNAENRKSLVDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNADPQRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +A+ L F ++ +L T
Sbjct: 354 GKEAFEARMEQALPLSAFLFNSLLPQVDLST 384
>gi|253686950|ref|YP_003016140.1| DNA primase [Pectobacterium carotovorum subsp. carotovorum PC1]
gi|251753528|gb|ACT11604.1| DNA primase [Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 584
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 141/456 (30%), Positives = 240/456 (52%), Gaps = 39/456 (8%)
Query: 5 SDFYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ L S A+ +L++RGL+ E+I F +G+AP W N L + + ++ +TL
Sbjct: 124 SGFYQQALSQSVGTPALQYLQQRGLSAEVISHFAIGFAPPGWDNVLKRFGRNNDDRSTLN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V ++ + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------DQGRTYDRFRERVMFPIRDKRGRVIAFGGRVLGDGT-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + + +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 232 NSPETEIFHKGRQLYGLYEAQQSHAELKRLLVVEGYMDVVALAQFGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+ ++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 DHIQLLFRATDLVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G +F +++ +A+ L QF E + ++ + K L +P +LR
Sbjct: 352 KEGKAVFEQRMEQALPLSQFLFETLQQQVDMSSPDGRTKLSTLALPLIGQVP-GETLRLY 410
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEK-KNIQPICIEYQIMK----LLISYPS 356
+ L N++ L + K E+ + QP ++ M+ LL+ P
Sbjct: 411 LRQQLG-------NKLGILDDSQLDRLLPKVAEQAQPYQPPQLKVTTMRILIGLLVQNPR 463
Query: 357 LINEINSEDMIIFSKCSQNYVKMFFQLIDT--------IHIFKNDIDHSKFIKYLKKINK 408
L E+ + + + +F L+ T + + SK+ K L+ +
Sbjct: 464 LAAEVPDLALEGIEEDKVAGLSLFQDLVKTCNASPGMNMGLLLEKYRDSKYRKQLETM-A 522
Query: 409 NFESIIVKIQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
++ +IV+ + + ++ I +A+ L D + K R+ +
Sbjct: 523 SWNHMIVEEELDEKFRISLAE--LYDQLLKQRQETL 556
>gi|340000731|ref|YP_004731615.1| DNA primase [Salmonella bongori NCTC 12419]
gi|339514093|emb|CCC31856.1| DNA primase [Salmonella bongori NCTC 12419]
Length = 581
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSLAHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQYHAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 352 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 384
>gi|438057340|ref|ZP_20856524.1| DNA primase, partial [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|435314632|gb|ELO88029.1| DNA primase, partial [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
Length = 541
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 84 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 143
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 144 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 191
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 192 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 251
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 252 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 311
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 312 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 344
>gi|422021798|ref|ZP_16368308.1| DNA primase [Providencia sneebia DSM 19967]
gi|414098395|gb|EKT60044.1| DNA primase [Providencia sneebia DSM 19967]
Length = 580
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 132/358 (36%), Positives = 204/358 (56%), Gaps = 28/358 (7%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY L + +K+A ++L +RGL EII F++G+AP W N L K + + L +
Sbjct: 126 FYYAALSHPTAKQANDYLSQRGLTAEIIEHFSIGFAPAGWDNLLKKFAVSAESRKQLNDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V + + YDRFR RIMFPI++ G++I FGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DNGRTYDRFRERIMFPIRDRRGRVIAFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +L+GL+EA + +L+ EGYMDV+ L+Q+G VA LGT+ TS H
Sbjct: 234 PETDIFHKGRQLFGLYEATQNSSELAKLLVVEGYMDVVALAQYGIRYAVASLGTSTTSEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPDS +RK
Sbjct: 294 IQLLFRSTDTVICCYDGDRAGREAAWRALETALPYLTDGRQLRFMFLPDGEDPDSLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK-SKYNIEYLFKIIPLSSSLRFKI 302
G + F ++ +A L F E ++ +LK + K SK I L K IP +LR +
Sbjct: 354 GKEAFEARMNDAQPLSTFLFESLVPQVDLKIQEGRAKFSKLAIP-LIKQIP-GETLRLYM 411
Query: 303 ISSLSKIIKVSFNEINNLFKI----NTSSIKHKTIEKKNIQPICIEYQIMKLLISYPS 356
L I + +I+ + + NT S+ ++ ++P + ++ LL+ P+
Sbjct: 412 AQELGNFIGIP--DISQVLAMIDRENTESVSYQA---PKLKPTTMRI-LIALLVQNPN 463
>gi|417513635|ref|ZP_12177640.1| DNA primase, partial [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353636189|gb|EHC82304.1| DNA primase, partial [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
Length = 583
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 126 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 185
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 186 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 233
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 234 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 293
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 294 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 353
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 354 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 386
>gi|417360809|ref|ZP_12134850.1| DNA primase [Salmonella enterica subsp. enterica serovar Give str.
S5-487]
gi|417469835|ref|ZP_12166121.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. S5-403]
gi|353585757|gb|EHC45510.1| DNA primase [Salmonella enterica subsp. enterica serovar Give str.
S5-487]
gi|353626633|gb|EHC75132.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. S5-403]
Length = 557
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 100 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 159
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 160 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 207
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 208 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 267
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 268 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 327
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 328 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 360
>gi|357418723|ref|YP_004931743.1| DNA primase [Pseudoxanthomonas spadix BD-a59]
gi|355336301|gb|AER57702.1| DNA primase [Pseudoxanthomonas spadix BD-a59]
Length = 574
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 132/401 (32%), Positives = 207/401 (51%), Gaps = 21/401 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
++ F++ QL S +A +L+ RG++E F +GYAP+ ++AL + + D I L
Sbjct: 118 ASARFFQRQLAGSDKARAYLEARGVDEATRTLFGIGYAPDGYSALKDALGSDARRIQLLE 177
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
G+ E+ YD+FR R+MFPI + G+ I FGGR++ + KY+
Sbjct: 178 RGGMFSRN-----------ERGHVYDKFRDRVMFPIADRRGRTIAFGGRVLDKQDGPKYL 226
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETPLFHK ELYGL++ + +K +++ EGYMDV+ L QFG VA LGTA T
Sbjct: 227 NSPETPLFHKGRELYGLWQVRQVNQKIDRLVVVEGYMDVVSLFQFGVTCAVATLGTATTP 286
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + + F FDGD AG+RA RALE L D + FLFLP+ DPDS +R
Sbjct: 287 DHAELLFRNAADVYFCFDGDAAGQRAGWRALESVLPRMKDGRQALFLFLPNGEDPDSIVR 346
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G + F+ ++ +A L QFF +E+ NL T+ + + L IP +
Sbjct: 347 KEGAEGFAARLAQATPLSQFFFDELSKEINLGTLDGKARLAEKAKPLLAQIP-DGAFGDL 405
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEI 361
+ + L++I V N ++ S T +P + I+++L + PSL ++
Sbjct: 406 MRAQLTRITGVGANPPPAPRRVPPRS----TARGPQQRPSLVRSAIVRVLHA-PSLALDV 460
Query: 362 NSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKY 402
+ F+ Q V++ +L+D I + DI +++
Sbjct: 461 PTP--YTFAGLRQPGVELLIELLDIIRT-RPDITPGALLEH 498
>gi|417375968|ref|ZP_12145288.1| DNA primase [Salmonella enterica subsp. enterica serovar Inverness
str. R8-3668]
gi|353594668|gb|EHC52110.1| DNA primase [Salmonella enterica subsp. enterica serovar Inverness
str. R8-3668]
Length = 568
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 111 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 170
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 171 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 218
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 219 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 278
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 279 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 338
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 339 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 371
>gi|226946706|ref|YP_002801779.1| DNA primase [Azotobacter vinelandii DJ]
gi|226721633|gb|ACO80804.1| DNA primase [Azotobacter vinelandii DJ]
Length = 638
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 185/324 (57%), Gaps = 17/324 (5%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ A+D+Y+ LK+ A+++LK RGL+ I F LG+AP W N L + D
Sbjct: 120 LATAADYYRQALKSHPARQVAVDYLKGRGLSGVIARDFALGFAPPGWDNLLKHLGGDALQ 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ +GL+++ E +RYDRFR R++FPI+++ G++I FGGR++ D +
Sbjct: 180 QKAMIEAGLLIENA----------ETGRRYDRFRDRVIFPIRDSRGRVIAFGGRVLGD-D 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGLFEA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 229 KPKYLNSPETPVFHKGQELYGLFEARRHNRDLDEIIVVEGYMDVIALAQQGLRNAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DP
Sbjct: 289 TATSEEHLKRLFRLVPSVLFCFDGDQAGRKAAWRALEATLPSLQDGRRARFLFLPEGEDP 348
Query: 237 DSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +R G + F ++ +A L +F ++ + T++ L + IP
Sbjct: 349 DSLVRAEGREAFLARLEQQARPLADYFFRQLTEEADPGTLEGKAHLATLAAPLIEKIP-G 407
Query: 296 SSLRFKIISSLSKIIKVSFNEINN 319
++LR + L++I ++ N+
Sbjct: 408 ANLRALMRQRLAEITGLTGTSPNS 431
>gi|375003047|ref|ZP_09727387.1| DNA primase [Salmonella enterica subsp. enterica serovar Infantis
str. SARB27]
gi|353077735|gb|EHB43495.1| DNA primase [Salmonella enterica subsp. enterica serovar Infantis
str. SARB27]
Length = 581
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 352 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 384
>gi|416507098|ref|ZP_11735131.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. SARB31]
gi|416515949|ref|ZP_11738899.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. ATCC BAA710]
gi|416557455|ref|ZP_11759532.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 42N]
gi|363553900|gb|EHL38145.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. SARB31]
gi|363563040|gb|EHL47121.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. ATCC BAA710]
gi|363578555|gb|EHL62360.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 42N]
Length = 581
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 352 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 384
>gi|417368072|ref|ZP_12139761.1| DNA primase, partial [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353587512|gb|EHC46790.1| DNA primase, partial [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
Length = 562
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 105 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 164
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 165 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 212
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 213 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 272
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 273 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 332
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 333 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 365
>gi|292490205|ref|YP_003525644.1| DNA primase [Nitrosococcus halophilus Nc4]
gi|291578800|gb|ADE13257.1| DNA primase [Nitrosococcus halophilus Nc4]
Length = 571
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/365 (33%), Positives = 199/365 (54%), Gaps = 26/365 (7%)
Query: 5 SDFYKIQLKNSKEAIN---FLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI---N 58
++FY+ QLK +L+ RGL+ II F LG+AP+ W+AL L + + +
Sbjct: 120 AEFYQQQLKTGTHQGRVKAYLQGRGLSHPIITEFGLGFAPSRWDAL----LRHTPLPLRS 175
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
L ++GLVVDK + YDRFR R+MFPI + G+++GFGGRL+ + +
Sbjct: 176 RLQTAGLVVDKGDGRC-----------YDRFRDRVMFPIHDYRGRVVGFGGRLLGEGS-P 223
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETPLFHK ELYGL++ + ++ +L+ EGYMDV+ L++ VA LGTA
Sbjct: 224 KYLNSPETPLFHKGRELYGLYQVRQSVRHCDRLLVVEGYMDVLALAEHNIRYAVATLGTA 283
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
T H+ ++ T ++F FDGD+AG RAA RALE L + + ++F+FLP DPD+
Sbjct: 284 TTPDHLTRLFRMTPVVVFCFDGDRAGYRAAWRALETALPLLSQGRQVQFMFLPQGEDPDT 343
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSL 298
+R G F ++ +A L F L + NL ++ + L IP
Sbjct: 344 VVRAEGQAAFEARLEKATPLSDFLLSSLQRKVNLGSMDGRARLVELARPLVSKIP-PGVY 402
Query: 299 RFKIISSLSKIIKVSFNEIN-NLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
R +++ L+++ +V + +L + + + + ++ + P+ + + +L+ P+L
Sbjct: 403 RDMLLARLAEVAQVEQAALTRHLDQGKSPPVVPRQRLERGMAPLA--RKAVAILLQRPNL 460
Query: 358 INEIN 362
I ++
Sbjct: 461 IQSVD 465
>gi|417328828|ref|ZP_12113855.1| DNA primase [Salmonella enterica subsp. enterica serovar Adelaide
str. A4-669]
gi|417352336|ref|ZP_12129582.1| DNA primase [Salmonella enterica subsp. enterica serovar Gaminara
str. A4-567]
gi|417428597|ref|ZP_12160912.1| DNA primase [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|417534050|ref|ZP_12187926.1| DNA primase [Salmonella enterica subsp. enterica serovar Urbana
str. R8-2977]
gi|417541856|ref|ZP_12193479.1| DNA primase [Salmonella enterica subsp. enterica serovar Wandsworth
str. A4-580]
gi|353566754|gb|EHC32141.1| DNA primase [Salmonella enterica subsp. enterica serovar Adelaide
str. A4-669]
gi|353566845|gb|EHC32203.1| DNA primase [Salmonella enterica subsp. enterica serovar Gaminara
str. A4-567]
gi|353615873|gb|EHC67277.1| DNA primase [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353659466|gb|EHC99353.1| DNA primase [Salmonella enterica subsp. enterica serovar Urbana
str. R8-2977]
gi|353659950|gb|EHC99698.1| DNA primase [Salmonella enterica subsp. enterica serovar Wandsworth
str. A4-580]
Length = 557
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 100 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 159
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 160 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 207
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 208 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 267
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 268 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 327
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 328 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 360
>gi|421449515|ref|ZP_15898899.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|396070812|gb|EJI79140.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
Length = 581
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 352 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 384
>gi|16761984|ref|NP_457601.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
CT18]
gi|29143471|ref|NP_806813.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
Ty2]
gi|213161044|ref|ZP_03346754.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
E00-7866]
gi|213425629|ref|ZP_03358379.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
E02-1180]
gi|213616353|ref|ZP_03372179.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
E98-2068]
gi|213646107|ref|ZP_03376160.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
J185]
gi|289827082|ref|ZP_06545871.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
E98-3139]
gi|378961309|ref|YP_005218795.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
P-stx-12]
gi|25298045|pir||AI0892 DNA primase [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16504287|emb|CAD07735.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi]
gi|29139105|gb|AAO70673.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
Ty2]
gi|374355181|gb|AEZ46942.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
P-stx-12]
Length = 581
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 352 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 384
>gi|397685697|ref|YP_006523016.1| DNA primase [Pseudomonas stutzeri DSM 10701]
gi|395807253|gb|AFN76658.1| DNA primase [Pseudomonas stutzeri DSM 10701]
Length = 666
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/332 (37%), Positives = 184/332 (55%), Gaps = 17/332 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNNIN 58
A+ +Y+ LK+ K A+ +LK RGL+ I F LG+AP W+ L K + D
Sbjct: 122 AAAGYYRQSLKSHPARKAAVEYLKSRGLSGVIARDFGLGFAPPGWDNLMKHLGGDALQHK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E + YDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 AMLDAGLLIENT----------ETGRSYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGLFEA+ A +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLFEARKANRDLDEIMVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGD AGR+AA RALE L D K +FLFLPD DPDS
Sbjct: 291 TSDEHLKRLFRIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGKRARFLFLPDGEDPDS 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F +++ + ++++ L IP +
Sbjct: 351 LVRHEGTDAFRARINQHAQPLADYFFQQLSEEADPRSLEGKAHLVTLAAPLIDRIP-GNH 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIK 329
LR + LS+I +S + + + + K
Sbjct: 410 LRTLMRQRLSEITGLSGEMLQQVAQSTPPAPK 441
>gi|417336513|ref|ZP_12118963.1| DNA primase, partial [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|353567702|gb|EHC32832.1| DNA primase, partial [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
Length = 571
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 114 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 173
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 174 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 221
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 222 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 281
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 282 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 341
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 342 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 374
>gi|198242235|ref|YP_002217191.1| DNA primase [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|375120700|ref|ZP_09765867.1| DNA primase [Salmonella enterica subsp. enterica serovar Dublin
str. SD3246]
gi|445142848|ref|ZP_21386259.1| DNA primase [Salmonella enterica subsp. enterica serovar Dublin
str. SL1438]
gi|445151082|ref|ZP_21390032.1| DNA primase [Salmonella enterica subsp. enterica serovar Dublin
str. HWS51]
gi|197936751|gb|ACH74084.1| DNA primase [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|326624967|gb|EGE31312.1| DNA primase [Salmonella enterica subsp. enterica serovar Dublin
str. SD3246]
gi|444848871|gb|ELX73990.1| DNA primase [Salmonella enterica subsp. enterica serovar Dublin
str. SL1438]
gi|444855982|gb|ELX81020.1| DNA primase [Salmonella enterica subsp. enterica serovar Dublin
str. HWS51]
Length = 581
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 352 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 384
>gi|213417804|ref|ZP_03350914.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
E01-6750]
Length = 573
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 116 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 175
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 176 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 223
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 224 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 283
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 284 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 343
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 344 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 376
>gi|16766510|ref|NP_462125.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|161616203|ref|YP_001590168.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi
B str. SPB7]
gi|167551874|ref|ZP_02345627.1| DNA primase [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|167990235|ref|ZP_02571335.1| DNA primase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168231813|ref|ZP_02656871.1| DNA primase [Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|168237908|ref|ZP_02662966.1| DNA primase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168243041|ref|ZP_02667973.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. SL486]
gi|168262828|ref|ZP_02684801.1| DNA primase [Salmonella enterica subsp. enterica serovar Hadar str.
RI_05P066]
gi|168463577|ref|ZP_02697494.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|194450817|ref|YP_002047208.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|194472212|ref|ZP_03078196.1| DNA primase [Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|194735480|ref|YP_002116167.1| DNA primase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197251239|ref|YP_002148140.1| DNA primase [Salmonella enterica subsp. enterica serovar Agona str.
SL483]
gi|197264535|ref|ZP_03164609.1| DNA primase [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|200389149|ref|ZP_03215761.1| DNA primase [Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|205354125|ref|YP_002227926.1| DNA primase [Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|207858468|ref|YP_002245119.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224585013|ref|YP_002638812.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi
C strain RKS4594]
gi|374979233|ref|ZP_09720572.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|375124994|ref|ZP_09770158.1| DNA primase [Salmonella enterica subsp. enterica serovar Gallinarum
str. SG9]
gi|378446561|ref|YP_005234193.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378452026|ref|YP_005239386.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|378701115|ref|YP_005183072.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378956832|ref|YP_005214319.1| DNA primase [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|378985809|ref|YP_005248965.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|378990529|ref|YP_005253693.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|379702472|ref|YP_005244200.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|383497869|ref|YP_005398558.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|386592906|ref|YP_006089306.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. B182]
gi|418760987|ref|ZP_13317139.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35185]
gi|418766026|ref|ZP_13322105.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35199]
gi|418771352|ref|ZP_13327359.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21539]
gi|418773880|ref|ZP_13329853.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 33953]
gi|418778314|ref|ZP_13334224.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35188]
gi|418783508|ref|ZP_13339355.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21559]
gi|418788636|ref|ZP_13344429.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19447]
gi|418794324|ref|ZP_13350045.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19449]
gi|418797524|ref|ZP_13353210.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19567]
gi|418801893|ref|ZP_13357525.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35202]
gi|418842365|ref|ZP_13397175.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21554]
gi|418846940|ref|ZP_13401705.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19443]
gi|418855996|ref|ZP_13410644.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19593]
gi|418857759|ref|ZP_13412384.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19470]
gi|418862766|ref|ZP_13417305.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19536]
gi|418869571|ref|ZP_13424004.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 4176]
gi|419731465|ref|ZP_14258378.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. 41579]
gi|419735920|ref|ZP_14262793.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. 41563]
gi|419739689|ref|ZP_14266434.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. 41573]
gi|419742085|ref|ZP_14268763.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. 41566]
gi|419748916|ref|ZP_14275406.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. 41565]
gi|419786852|ref|ZP_14312567.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. Levine 1]
gi|419793244|ref|ZP_14318867.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. Levine 15]
gi|421360799|ref|ZP_15811075.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|421363573|ref|ZP_15813815.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|421369896|ref|ZP_15820071.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|421374340|ref|ZP_15824471.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|421378723|ref|ZP_15828802.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|421383608|ref|ZP_15833646.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|421384746|ref|ZP_15834769.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|421389612|ref|ZP_15839595.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|421396898|ref|ZP_15846823.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|421399677|ref|ZP_15849572.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|421405834|ref|ZP_15855659.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|421408639|ref|ZP_15858438.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|421414731|ref|ZP_15864467.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|421417667|ref|ZP_15867377.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|421421005|ref|ZP_15870681.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|421428651|ref|ZP_15878262.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|421431094|ref|ZP_15880680.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|421435477|ref|ZP_15885013.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|421439900|ref|ZP_15889380.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|421444042|ref|ZP_15893481.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|421573092|ref|ZP_16018737.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. CFSAN00322]
gi|421577072|ref|ZP_16022662.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. CFSAN00325]
gi|421579570|ref|ZP_16025133.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. CFSAN00326]
gi|421583422|ref|ZP_16028946.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. CFSAN00328]
gi|421883913|ref|ZP_16315135.1| DNA primase [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|422027433|ref|ZP_16373775.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|422032471|ref|ZP_16378583.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|427554171|ref|ZP_18929073.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|427571813|ref|ZP_18933788.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|427592497|ref|ZP_18938587.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|427616323|ref|ZP_18943479.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|427639979|ref|ZP_18948357.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|427657450|ref|ZP_18953102.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|427662766|ref|ZP_18958067.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|427676649|ref|ZP_18962882.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|427800479|ref|ZP_18968230.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|436602307|ref|ZP_20513127.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|436747626|ref|ZP_20520042.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE30663]
gi|436799872|ref|ZP_20524158.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|436807276|ref|ZP_20527319.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|436818167|ref|ZP_20534800.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|436832390|ref|ZP_20536680.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|436853264|ref|ZP_20543289.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|436860949|ref|ZP_20548133.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|436867823|ref|ZP_20552977.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|436873168|ref|ZP_20556050.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|436880162|ref|ZP_20559921.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|436891793|ref|ZP_20566493.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|436899301|ref|ZP_20570712.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|436902812|ref|ZP_20573276.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|436915105|ref|ZP_20579952.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|436919804|ref|ZP_20582585.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|436929096|ref|ZP_20588302.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|436938291|ref|ZP_20593078.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|436946148|ref|ZP_20597976.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|436955611|ref|ZP_20602486.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|436966343|ref|ZP_20607012.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|436970436|ref|ZP_20608966.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|436979908|ref|ZP_20613053.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|436993684|ref|ZP_20618477.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|437009449|ref|ZP_20623826.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|437022590|ref|ZP_20628539.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|437028541|ref|ZP_20630633.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|437042812|ref|ZP_20636325.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|437050487|ref|ZP_20640632.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|437061719|ref|ZP_20647085.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|437066635|ref|ZP_20649697.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|437074140|ref|ZP_20653582.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|437083224|ref|ZP_20658967.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|437097966|ref|ZP_20665421.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|437110751|ref|ZP_20668097.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|437124990|ref|ZP_20673738.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|437129709|ref|ZP_20676185.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|437141580|ref|ZP_20683264.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|437146338|ref|ZP_20686127.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|437153524|ref|ZP_20690630.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|437159672|ref|ZP_20694070.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|437169135|ref|ZP_20699528.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|437173350|ref|ZP_20701676.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|437184670|ref|ZP_20708535.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|437201079|ref|ZP_20711780.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|437264914|ref|ZP_20720190.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|437269228|ref|ZP_20722471.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|437277440|ref|ZP_20726799.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|437296827|ref|ZP_20732628.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|437316045|ref|ZP_20737733.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|437327879|ref|ZP_20740821.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|437341946|ref|ZP_20745069.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|437350373|ref|ZP_20747324.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|437417703|ref|ZP_20754122.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|437445946|ref|ZP_20758668.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|437463550|ref|ZP_20763232.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|437480887|ref|ZP_20768592.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|437492380|ref|ZP_20771611.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|437504725|ref|ZP_20775207.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|437538271|ref|ZP_20781970.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|437567273|ref|ZP_20787544.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|437580670|ref|ZP_20792073.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|437588170|ref|ZP_20793810.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|437604907|ref|ZP_20799086.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|437619526|ref|ZP_20803678.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|437646068|ref|ZP_20808963.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|437665554|ref|ZP_20814705.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|437679850|ref|ZP_20818154.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|437700109|ref|ZP_20823696.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|437702346|ref|ZP_20824128.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|437729605|ref|ZP_20830737.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|437761737|ref|ZP_20834741.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|437808649|ref|ZP_20840354.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|437837916|ref|ZP_20845909.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|437865340|ref|ZP_20848095.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|438095443|ref|ZP_20862041.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|438101888|ref|ZP_20864715.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|438116458|ref|ZP_20870977.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|438140992|ref|ZP_20874990.1| DNA primase [Salmonella enterica subsp. enterica serovar Pullorum
str. ATCC 9120]
gi|440765149|ref|ZP_20944170.1| DNA primase [Salmonella enterica subsp. enterica serovar Agona str.
SH11G1113]
gi|440770485|ref|ZP_20949434.1| DNA primase [Salmonella enterica subsp. enterica serovar Agona str.
SH08SF124]
gi|440775173|ref|ZP_20954058.1| DNA primase [Salmonella enterica subsp. enterica serovar Agona str.
SH10GFN094]
gi|445135610|ref|ZP_21383362.1| DNA primase [Salmonella enterica subsp. enterica serovar Gallinarum
str. 9184]
gi|445169472|ref|ZP_21395275.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|445180169|ref|ZP_21398116.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|445226450|ref|ZP_21403931.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|445241207|ref|ZP_21407648.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|445330757|ref|ZP_21413945.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|445346258|ref|ZP_21418689.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|445358515|ref|ZP_21422707.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|130909|sp|P07362.1|PRIM_SALTY RecName: Full=DNA primase
gi|154405|gb|AAA27241.1| dnaG protein [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|16421767|gb|AAL22084.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|161365567|gb|ABX69335.1| hypothetical protein SPAB_04006 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194409121|gb|ACF69340.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|194458576|gb|EDX47415.1| DNA primase [Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|194710982|gb|ACF90203.1| DNA primase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|195633226|gb|EDX51640.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|197214942|gb|ACH52339.1| DNA primase [Salmonella enterica subsp. enterica serovar Agona str.
SL483]
gi|197242790|gb|EDY25410.1| DNA primase [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|197289182|gb|EDY28551.1| DNA primase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|199606247|gb|EDZ04792.1| DNA primase [Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|205273906|emb|CAR38908.1| DNA primase [Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|205323288|gb|EDZ11127.1| DNA primase [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|205331063|gb|EDZ17827.1| DNA primase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205333716|gb|EDZ20480.1| DNA primase [Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|205337854|gb|EDZ24618.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. SL486]
gi|205348472|gb|EDZ35103.1| DNA primase [Salmonella enterica subsp. enterica serovar Hadar str.
RI_05P066]
gi|206710271|emb|CAR34629.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224469541|gb|ACN47371.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi
C strain RKS4594]
gi|261248340|emb|CBG26177.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267995405|gb|ACY90290.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301159763|emb|CBW19282.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312914238|dbj|BAJ38212.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321225893|gb|EFX50947.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|323131571|gb|ADX19001.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|326629244|gb|EGE35587.1| DNA primase [Salmonella enterica subsp. enterica serovar Gallinarum
str. SG9]
gi|332990076|gb|AEF09059.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|357207443|gb|AET55489.1| DNA primase [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|379986514|emb|CCF87408.1| DNA primase [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|380464690|gb|AFD60093.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|381291646|gb|EIC32883.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. 41579]
gi|381294244|gb|EIC35384.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. 41563]
gi|381298268|gb|EIC39349.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. 41573]
gi|381312912|gb|EIC53705.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. 41565]
gi|381315452|gb|EIC56215.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. 41566]
gi|383799947|gb|AFH47029.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. B182]
gi|392617223|gb|EIW99648.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. Levine 15]
gi|392620795|gb|EIX03161.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. Levine 1]
gi|392733880|gb|EIZ91071.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21539]
gi|392738744|gb|EIZ95884.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35199]
gi|392741708|gb|EIZ98804.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35185]
gi|392752920|gb|EJA09860.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 33953]
gi|392755523|gb|EJA12432.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35188]
gi|392757356|gb|EJA14246.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21559]
gi|392761714|gb|EJA18533.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19449]
gi|392762302|gb|EJA19117.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19447]
gi|392768963|gb|EJA25709.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19567]
gi|392779345|gb|EJA36014.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35202]
gi|392806936|gb|EJA63020.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21554]
gi|392809411|gb|EJA65448.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19443]
gi|392820346|gb|EJA76196.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19593]
gi|392834163|gb|EJA89773.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19536]
gi|392834828|gb|EJA90430.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19470]
gi|392836034|gb|EJA91622.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 4176]
gi|395981366|gb|EJH90588.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|395982019|gb|EJH91240.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|395988034|gb|EJH97196.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|395994464|gb|EJI03540.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|395995058|gb|EJI04123.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|395995842|gb|EJI04906.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|396009352|gb|EJI18285.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|396017171|gb|EJI26037.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|396018378|gb|EJI27240.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|396022062|gb|EJI30876.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|396027771|gb|EJI36534.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|396028054|gb|EJI36816.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|396034766|gb|EJI43447.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|396042502|gb|EJI51124.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|396044050|gb|EJI52648.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|396048686|gb|EJI57235.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|396054920|gb|EJI63412.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|396055889|gb|EJI64365.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|396068035|gb|EJI76383.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|396069673|gb|EJI78011.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|402515168|gb|EJW22583.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. CFSAN00322]
gi|402516956|gb|EJW24364.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. CFSAN00325]
gi|402521781|gb|EJW29115.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. CFSAN00326]
gi|402532348|gb|EJW39545.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
str. CFSAN00328]
gi|414014884|gb|EKS98718.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|414016081|gb|EKS99871.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|414016251|gb|EKT00025.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|414029127|gb|EKT12289.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|414030650|gb|EKT13743.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|414033434|gb|EKT16385.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|414043985|gb|EKT26448.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|414044729|gb|EKT27165.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|414049810|gb|EKT32009.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|414057076|gb|EKT38843.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|414063354|gb|EKT44504.1| DNA primase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|434939814|gb|ELL46569.1| DNA primase [Salmonella enterica subsp. enterica serovar Pullorum
str. ATCC 9120]
gi|434959902|gb|ELL53348.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|434968232|gb|ELL60984.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|434970711|gb|ELL63272.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|434971445|gb|ELL63958.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE30663]
gi|434974530|gb|ELL66885.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|434980989|gb|ELL72876.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|434984609|gb|ELL76349.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|434985393|gb|ELL77080.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|434992975|gb|ELL84414.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|435000025|gb|ELL91199.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|435005006|gb|ELL95928.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|435005922|gb|ELL96842.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|435012436|gb|ELM03111.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|435019242|gb|ELM09686.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|435023187|gb|ELM13483.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|435029639|gb|ELM19697.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|435033786|gb|ELM23678.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|435033815|gb|ELM23705.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|435035720|gb|ELM25565.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|435045987|gb|ELM35613.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|435046753|gb|ELM36368.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|435058239|gb|ELM47594.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|435065361|gb|ELM54467.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|435067273|gb|ELM56334.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|435068464|gb|ELM57492.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|435076527|gb|ELM65310.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|435083462|gb|ELM72063.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|435084577|gb|ELM73162.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|435088203|gb|ELM76660.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|435093191|gb|ELM81531.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|435097441|gb|ELM85700.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|435106610|gb|ELM94627.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|435107941|gb|ELM95924.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|435108797|gb|ELM96762.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|435119001|gb|ELN06652.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|435119069|gb|ELN06708.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|435126929|gb|ELN14323.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|435127748|gb|ELN15108.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|435136583|gb|ELN23673.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|435141275|gb|ELN28217.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|435148451|gb|ELN35167.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|435148863|gb|ELN35577.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|435158858|gb|ELN45230.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|435159921|gb|ELN46239.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|435161281|gb|ELN47523.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|435172175|gb|ELN57718.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|435172836|gb|ELN58361.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|435179254|gb|ELN64404.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|435180521|gb|ELN65629.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|435192060|gb|ELN76616.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|435193612|gb|ELN78091.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|435202338|gb|ELN86192.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|435210335|gb|ELN93606.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|435214407|gb|ELN97207.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|435214440|gb|ELN97236.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|435218063|gb|ELO00470.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|435218827|gb|ELO01228.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|435228672|gb|ELO10095.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|435235013|gb|ELO15866.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|435235811|gb|ELO16593.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|435239117|gb|ELO19725.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|435240921|gb|ELO21311.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|435256850|gb|ELO36144.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|435258315|gb|ELO37582.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|435258806|gb|ELO38066.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|435265141|gb|ELO44026.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|435271873|gb|ELO50311.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|435272120|gb|ELO50541.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|435274170|gb|ELO52294.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|435289717|gb|ELO66667.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|435294682|gb|ELO71302.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|435298618|gb|ELO74827.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|435300317|gb|ELO76412.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|435309158|gb|ELO83939.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|435314071|gb|ELO87549.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|435324571|gb|ELO96504.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|435327973|gb|ELO99624.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|435335767|gb|ELP05905.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|436411183|gb|ELP09136.1| DNA primase [Salmonella enterica subsp. enterica serovar Agona str.
SH08SF124]
gi|436411787|gb|ELP09735.1| DNA primase [Salmonella enterica subsp. enterica serovar Agona str.
SH10GFN094]
gi|436414668|gb|ELP12595.1| DNA primase [Salmonella enterica subsp. enterica serovar Agona str.
SH11G1113]
gi|444845811|gb|ELX70999.1| DNA primase [Salmonella enterica subsp. enterica serovar Gallinarum
str. 9184]
gi|444863428|gb|ELX88253.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|444867783|gb|ELX92460.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|444872191|gb|ELX96551.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|444877817|gb|ELY01952.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|444878228|gb|ELY02351.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|444886070|gb|ELY09839.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|444891017|gb|ELY14301.1| DNA primase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
Length = 581
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 352 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 384
>gi|62181727|ref|YP_218144.1| DNA primase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|375116067|ref|ZP_09761237.1| DNA primase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|62129360|gb|AAX67063.1| DNA biosynthesis; DNA primase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|322716213|gb|EFZ07784.1| DNA primase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
Length = 581
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 352 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 384
>gi|416527059|ref|ZP_11742897.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. LQC 10]
gi|416534009|ref|ZP_11746827.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. SARB30]
gi|416549742|ref|ZP_11755585.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 29N]
gi|416568408|ref|ZP_11764760.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 4441 H]
gi|418514565|ref|ZP_13080765.1| DNA primase [Salmonella enterica subsp. enterica serovar Pomona
str. ATCC 10729]
gi|452122968|ref|YP_007473216.1| DNA primase [Salmonella enterica subsp. enterica serovar Javiana
str. CFSAN001992]
gi|363556714|gb|EHL40927.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. LQC 10]
gi|363567633|gb|EHL51631.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. SARB30]
gi|363569691|gb|EHL53641.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 29N]
gi|363577753|gb|EHL61572.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 4441 H]
gi|366078816|gb|EHN42814.1| DNA primase [Salmonella enterica subsp. enterica serovar Pomona
str. ATCC 10729]
gi|451911972|gb|AGF83778.1| DNA primase [Salmonella enterica subsp. enterica serovar Javiana
str. CFSAN001992]
Length = 581
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 352 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 384
>gi|194446779|ref|YP_002042477.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|418806426|ref|ZP_13361998.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21550]
gi|418810586|ref|ZP_13366126.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 22513]
gi|418818202|ref|ZP_13373681.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21538]
gi|418823270|ref|ZP_13378679.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 22425]
gi|418826731|ref|ZP_13381925.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 22462]
gi|418831164|ref|ZP_13386122.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM N18486]
gi|418837103|ref|ZP_13391978.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM N1543]
gi|418847832|ref|ZP_13402572.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 37978]
gi|194405442|gb|ACF65664.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|392781534|gb|EJA38175.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 22513]
gi|392783043|gb|EJA39673.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21550]
gi|392786164|gb|EJA42721.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 22425]
gi|392786614|gb|EJA43170.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21538]
gi|392799179|gb|EJA55438.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM N1543]
gi|392800360|gb|EJA56598.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM N18486]
gi|392804607|gb|EJA60760.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 22462]
gi|392823891|gb|EJA79682.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
str. CVM 37978]
Length = 581
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 352 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 384
>gi|157960787|ref|YP_001500821.1| DNA primase [Shewanella pealeana ATCC 700345]
gi|157845787|gb|ABV86286.1| DNA primase [Shewanella pealeana ATCC 700345]
Length = 576
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 127/369 (34%), Positives = 207/369 (56%), Gaps = 35/369 (9%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNN 56
M AS+F++ QL+ + ++ +++L RGL +E++ FN+G+AP+ W+ L ++ + ++
Sbjct: 117 MEEASNFFQNQLRQNTDKQKVLDYLDHRGLTKEVVEHFNIGFAPDGWDGLLSRYRQNQDS 176
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ L ++G+V++ + KRYDRFR R+MFPI++ G++IGFGGR++ D
Sbjct: 177 QDKLLTAGMVIEN-----------DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT 225
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPETP+FHK NELYGL+E K VLI EGYMDV+ L+QF VA LG
Sbjct: 226 -PKYLNSPETPIFHKGNELYGLYELKQRHRDPQRVLIVEGYMDVVALAQFDVDYAVASLG 284
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
T+ T+ + +L +I +DGD+AG+ AA RALE L ++F+FLP+ DP
Sbjct: 285 TSTTADQFQLLLRSAKEVICCYDGDKAGKEAAWRALETALPLLKPGNQVRFMFLPEGEDP 344
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLK--------TIKDIEKSKYNIEYL 288
D+ +R+ G + F ++ +AM+L +F E + Y + IK IEK + +
Sbjct: 345 DTLVRQIGKEQFEAQIDQAMALPEFLFENLAKTYANEDKSVLAKNAIKLIEKVQDTVLQS 404
Query: 289 FKIIPLSSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIM 348
+ L+ LR L + K +F+ K +HK ++ + P+ + +
Sbjct: 405 LLLEDLAHKLRMNGADELKR--KFNFSA-----KAAEKPSQHKALKGRGT-PLRL---AI 453
Query: 349 KLLISYPSL 357
LL+ +P L
Sbjct: 454 ALLVQHPRL 462
>gi|440286102|ref|YP_007338867.1| DNA primase, catalytic core [Enterobacteriaceae bacterium strain
FGI 57]
gi|440045624|gb|AGB76682.1| DNA primase, catalytic core [Enterobacteriaceae bacterium strain
FGI 57]
Length = 581
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 166/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L N + A +L+KRGL+ E+I RF +GYAP W N L + + N L +
Sbjct: 126 FYQQSLMNPAADPARQYLEKRGLSSEVISRFAIGYAPPGWDNVLKRFGGNSENRQALIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQTEAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLMPQVDLST 384
>gi|283787202|ref|YP_003367067.1| DNA primase [Citrobacter rodentium ICC168]
gi|282950656|emb|CBG90328.1| DNA primase [Citrobacter rodentium ICC168]
Length = 582
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 167/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLMQPAATPARQYLEKRGLSSEVIARFAIGFAPPGWDNVLKRFGGNSENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNADPQRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A+ L F ++ +L T
Sbjct: 354 GKAAFEARMEQALPLSAFLFNSLLPQVDLST 384
>gi|56415150|ref|YP_152225.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi
A str. ATCC 9150]
gi|168819724|ref|ZP_02831724.1| DNA primase [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|197364080|ref|YP_002143717.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi
A str. AKU_12601]
gi|409246930|ref|YP_006887632.1| DNA primase [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|56129407|gb|AAV78913.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi
A str. ATCC 9150]
gi|197095557|emb|CAR61122.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi
A str. AKU_12601]
gi|205343289|gb|EDZ30053.1| DNA primase [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|320087664|emb|CBY97428.1| DNA primase [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 581
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYVVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 352 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 384
>gi|37527833|ref|NP_931178.1| DNA primase [Photorhabdus luminescens subsp. laumondii TTO1]
gi|36787269|emb|CAE16350.1| DNA primase [Photorhabdus luminescens subsp. laumondii TTO1]
Length = 581
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 165/259 (63%), Gaps = 13/259 (5%)
Query: 15 SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASSGLVVDKIINK 73
+++A +L +RGL+EEII RF++G+AP W N L + + + L +G++V
Sbjct: 136 AQQARQYLAQRGLSEEIIHRFSIGFAPAGWDNTLKRFAHNEEDRRQLNDAGMLVAN---- 191
Query: 74 VNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSN 133
+ + YDRFR RIMFPI++ G++I FGGR++ D+ KY+NSPET +FHK
Sbjct: 192 -------DNGRTYDRFRERIMFPIRDRRGRVIAFGGRVLGDA-LPKYLNSPETEIFHKGR 243
Query: 134 ELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNS 193
+LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT+ TS HI+ + T++
Sbjct: 244 QLYGLYEAQQNHSDLSRLLVVEGYMDVVALAQFGIDYAVASLGTSTTSEHIQLLFRATDN 303
Query: 194 IIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKVL 253
+I +DGD+AGR AA RALE L Y D + ++F+FLPD DPDS +RK G K F +++
Sbjct: 304 VICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPDSLVRKEGRKAFEQRME 363
Query: 254 EAMSLLQFFLEEIILNYNL 272
++ +L +F E ++ +L
Sbjct: 364 QSHTLSEFLFESLLPQVDL 382
>gi|423141744|ref|ZP_17129382.1| DNA primase [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|379050916|gb|EHY68808.1| DNA primase [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 581
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 112/273 (41%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L +S K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSLTHSAAKPARDYLQKRGLSIEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 352 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 384
>gi|416426594|ref|ZP_11693089.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 315996572]
gi|416429168|ref|ZP_11694381.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-1]
gi|416439220|ref|ZP_11700097.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-3]
gi|416445947|ref|ZP_11704702.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-4]
gi|416451338|ref|ZP_11708088.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 515920-1]
gi|416460083|ref|ZP_11714528.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 515920-2]
gi|416462591|ref|ZP_11715558.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 531954]
gi|416480237|ref|ZP_11722754.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. NC_MB110209-0054]
gi|416492813|ref|ZP_11727600.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. OH_2009072675]
gi|416500791|ref|ZP_11731653.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. CASC_09SCPH15965]
gi|416546668|ref|ZP_11754062.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 19N]
gi|416577597|ref|ZP_11769883.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 81038-01]
gi|416584125|ref|ZP_11773865.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. MD_MDA09249507]
gi|416591540|ref|ZP_11778484.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 414877]
gi|416598413|ref|ZP_11782800.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 366867]
gi|416606929|ref|ZP_11788170.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 413180]
gi|416610474|ref|ZP_11790081.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 446600]
gi|416619020|ref|ZP_11794826.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 609458-1]
gi|416628552|ref|ZP_11799717.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 556150-1]
gi|416641697|ref|ZP_11805516.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 609460]
gi|416647003|ref|ZP_11808002.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 507440-20]
gi|416656895|ref|ZP_11813351.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 556152]
gi|416670368|ref|ZP_11820082.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. MB101509-0077]
gi|416675220|ref|ZP_11821543.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. MB102109-0047]
gi|416699974|ref|ZP_11828988.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. MB110209-0055]
gi|416705893|ref|ZP_11831152.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. MB111609-0052]
gi|416712427|ref|ZP_11836138.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 2009083312]
gi|416718625|ref|ZP_11840733.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 2009085258]
gi|416723020|ref|ZP_11843785.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 315731156]
gi|416733009|ref|ZP_11850100.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2009159199]
gi|416737737|ref|ZP_11852890.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008282]
gi|416748460|ref|ZP_11858717.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008283]
gi|416754850|ref|ZP_11861642.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008284]
gi|416761494|ref|ZP_11865545.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008285]
gi|416771379|ref|ZP_11872644.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008287]
gi|418481712|ref|ZP_13050735.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 80959-06]
gi|418490893|ref|ZP_13057427.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. CT_02035278]
gi|418495694|ref|ZP_13062132.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. CT_02035318]
gi|418498511|ref|ZP_13064925.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. CT_02035320]
gi|418505717|ref|ZP_13072063.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. CT_02035321]
gi|418507680|ref|ZP_13073999.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. CT_02035327]
gi|418524471|ref|ZP_13090456.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008286]
gi|322613614|gb|EFY10555.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 315996572]
gi|322621207|gb|EFY18065.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-1]
gi|322624270|gb|EFY21104.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-3]
gi|322627992|gb|EFY24781.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-4]
gi|322633110|gb|EFY29852.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 515920-1]
gi|322636313|gb|EFY33021.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 515920-2]
gi|322643487|gb|EFY40049.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 531954]
gi|322644794|gb|EFY41329.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. NC_MB110209-0054]
gi|322648603|gb|EFY45050.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. OH_2009072675]
gi|322653655|gb|EFY49981.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. CASC_09SCPH15965]
gi|322657763|gb|EFY54031.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 19N]
gi|322663864|gb|EFY60063.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 81038-01]
gi|322669125|gb|EFY65276.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. MD_MDA09249507]
gi|322672882|gb|EFY68989.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 414877]
gi|322678128|gb|EFY74191.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 366867]
gi|322681304|gb|EFY77337.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 413180]
gi|322687766|gb|EFY83733.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 446600]
gi|323195578|gb|EFZ80755.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 609458-1]
gi|323199741|gb|EFZ84831.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 556150-1]
gi|323202511|gb|EFZ87551.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 609460]
gi|323212447|gb|EFZ97264.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 556152]
gi|323215071|gb|EFZ99819.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. MB101509-0077]
gi|323222801|gb|EGA07166.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. MB102109-0047]
gi|323224118|gb|EGA08411.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. MB110209-0055]
gi|323230442|gb|EGA14560.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. MB111609-0052]
gi|323235206|gb|EGA19292.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 2009083312]
gi|323239247|gb|EGA23297.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 2009085258]
gi|323244395|gb|EGA28401.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 315731156]
gi|323247012|gb|EGA30978.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2009159199]
gi|323253506|gb|EGA37335.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008282]
gi|323256188|gb|EGA39924.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008283]
gi|323262636|gb|EGA46192.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008284]
gi|323267268|gb|EGA50752.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008285]
gi|323269330|gb|EGA52785.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008287]
gi|366058210|gb|EHN22499.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. CT_02035318]
gi|366064256|gb|EHN28456.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. CT_02035278]
gi|366064445|gb|EHN28642.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 80959-06]
gi|366068024|gb|EHN32172.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. CT_02035321]
gi|366073263|gb|EHN37336.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. CT_02035320]
gi|366080934|gb|EHN44888.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. CT_02035327]
gi|366830446|gb|EHN57316.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. 507440-20]
gi|372207330|gb|EHP20829.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008286]
Length = 581
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 232 NSPETNIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 352 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 384
>gi|260912697|ref|ZP_05919183.1| DNA primase [Pasteurella dagmatis ATCC 43325]
gi|260633075|gb|EEX51240.1| DNA primase [Pasteurella dagmatis ATCC 43325]
Length = 582
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 199/355 (56%), Gaps = 22/355 (6%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINT 59
M ++FY+ QL A ++L++RGL+ EII RF +G+ PN ++A+ + F N +
Sbjct: 122 MQTIAEFYQQQLAQHIPAQSYLQQRGLSSEIIARFQIGFVPNSFDAVLQHFGRSNEDQQK 181
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L G++ E+ K YDRFR RIMFPI++ G+ I FGGR++ D + K
Sbjct: 182 LFDLGMLSRN-----------EQGKIYDRFRHRIMFPIRDRRGRTIAFGGRVLGD-EKPK 229
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPET +HK NELYGL+EA E +L+ EGYMDV+ L+QFG VA LGTA
Sbjct: 230 YLNSPETATYHKGNELYGLYEALQKNETPEMLLVVEGYMDVVALAQFGVDYAVASLGTAT 289
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T+ I+ + T I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS+
Sbjct: 290 TAEQIQLLFRSTEQAICCYDGDRAGREAAWRAFENALPYLEDGRQLKFIFLPDGEDPDSF 349
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
IR++G F + + +A+SL +F + + T + K L K IP + LR
Sbjct: 350 IRQYGKSGFEEYIQKALSLSEFLFSSLTPQVDFSTKEGKTKLAALAVPLIKKIP-GAMLR 408
Query: 300 FKIISSLSKIIKV-SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
+ ++L++ + + ++ NL H I K + QP ++ M++LI+
Sbjct: 409 LSLRNTLAQKLGILDQAQLENLIPT------HSEI-KTSSQPQAVKRTPMRVLIA 456
>gi|268590607|ref|ZP_06124828.1| DNA primase [Providencia rettgeri DSM 1131]
gi|291313998|gb|EFE54451.1| DNA primase [Providencia rettgeri DSM 1131]
Length = 581
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 129/353 (36%), Positives = 205/353 (58%), Gaps = 26/353 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
CA+ + ++ +A ++L +RGL+ EII F++G+AP W N L K ++ + L
Sbjct: 128 CAA----LSHPSANKAKDYLSQRGLSTEIIEHFSIGFAPAGWDNLLKKFAVNPESRKQLD 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V +V YDRFR R+MFPI++ G++I FGGR++ D+ KY+
Sbjct: 184 DAGMLVTNDNGRV-----------YDRFRERVMFPIRDRRGRVIAFGGRVLGDA-LPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +L+GL+EA + +L+ EGYMDV+ L+Q+ VA LGT+ TS
Sbjct: 232 NSPETDIFHKGRQLFGLYEATQNSNELSKLLVVEGYMDVVALAQYDIRYAVASLGTSTTS 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPDS +R
Sbjct: 292 EHIQLLYRSTDTVICCYDGDRAGREAAWRALETALPYLTDGRQLRFMFLPDGEDPDSLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK-SKYNIEYLFKIIPLSSSLRF 300
K G F +++ +A +L F + ++ +LKT + K SK I L K IP +LR
Sbjct: 352 KEGKNAFEQRMKDAQTLSAFLFDSLVPQVDLKTQEGKAKFSKLAIP-LIKQIP-GETLRL 409
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
+ L I + +I+ + + I ++ E+ N Q ++ M++LI+
Sbjct: 410 YMAQELGNFIGIP--DISQVLAM----IDRESTEQVNYQAPKLKPTTMRILIA 456
>gi|213854871|ref|ZP_03383111.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
M223]
Length = 504
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 123 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 182
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 183 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 230
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 231 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 290
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 291 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 350
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 351 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 383
>gi|336247239|ref|YP_004590949.1| DNA primase [Enterobacter aerogenes KCTC 2190]
gi|334733295|gb|AEG95670.1| DNA primase [Enterobacter aerogenes KCTC 2190]
Length = 581
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 167/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L ++ A +L KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLNQPAAEPARQYLAKRGLSSEVITRFAIGFAPPGWDNVLKRFGGNQENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPQRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN +I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +R+
Sbjct: 294 IQLLFRATNQVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRQE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +A L F ++ +L T
Sbjct: 354 GKEAFEARMEQAQPLSTFLFNSLMPQVDLST 384
>gi|401678686|ref|ZP_10810645.1| DNA primase [Enterobacter sp. SST3]
gi|400214113|gb|EJO45040.1| DNA primase [Enterobacter sp. SST3]
Length = 580
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 172/273 (63%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ N++ A +L++RGL+ EI+ +F +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSFTQPNAEPARRYLEQRGLSAEIVQQFAIGFAPPGWDNALKRFGGNVDNRKLLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------DQGRTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQHQAEPQRLLVVEGYMDVVALAQYGIHYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G + F ++ +A L F ++ +L +
Sbjct: 352 KEGKEAFEARMEQAQPLSMFLFNSLLPQVDLSS 384
>gi|296104730|ref|YP_003614876.1| DNA primase [Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295059189|gb|ADF63927.1| DNA primase [Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 581
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ LK+S + A +L KRGL++++I RF +GYAP W N L + + + +L +
Sbjct: 126 FYQQSLKHSAAEPARQYLNKRGLSDDVIARFAIGYAPPGWDNVLKRFGGNSEDRKSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ A + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQANAEPPRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T ++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTKNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLMPQVDLST 384
>gi|395228346|ref|ZP_10406669.1| DNA primase [Citrobacter sp. A1]
gi|421845167|ref|ZP_16278322.1| DNA primase [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|424732033|ref|ZP_18160614.1| dna primase [Citrobacter sp. L17]
gi|394717995|gb|EJF23639.1| DNA primase [Citrobacter sp. A1]
gi|411773488|gb|EKS57033.1| DNA primase [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|422893661|gb|EKU33508.1| dna primase [Citrobacter sp. L17]
gi|455642707|gb|EMF21858.1| DNA primase [Citrobacter freundii GTC 09479]
Length = 581
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 168/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + A +L+KRGL+ ++I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLMQPAATPARQYLEKRGLSSDVITRFAIGFAPPGWDNVLKRFGGNAENRKSLVDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNADPQRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +A+ L F ++ +L T
Sbjct: 354 GKEAFEARMEQALPLSAFLFNSLLPQVDLST 384
>gi|365103140|ref|ZP_09333172.1| DNA primase [Citrobacter freundii 4_7_47CFAA]
gi|363645479|gb|EHL84742.1| DNA primase [Citrobacter freundii 4_7_47CFAA]
Length = 581
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 168/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + A +L+KRGL+ ++I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLMQPAATPARQYLEKRGLSSDVITRFAIGFAPPGWDNVLKRFGGNAENRKSLVDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNADPQRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +A+ L F ++ +L T
Sbjct: 354 GKEAFEARMEQALPLSAFLFNSLLPQVDLST 384
>gi|167724584|ref|ZP_02407820.1| DNA primase [Burkholderia pseudomallei DM98]
Length = 331
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 140/198 (70%), Gaps = 7/198 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A D+Y+ QL+ + AI +LK+RGL EI LRF LGYAP+ W L F DY + ++L
Sbjct: 128 MQTACDYYRKQLRGAPNAIQYLKRRGLTGEIALRFGLGYAPDGWQNLEAAFDDYRH-DSL 186
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GLV+ + K + + V +RYDRFR RIMFPI+N GQ+IGFGGR++ D E KY
Sbjct: 187 VDAGLVI--VSEKTDANGVA---RRYDRFRERIMFPIRNVKGQVIGFGGRVL-DGGEPKY 240
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPLF+K +ELYGLFEA+ AI + Y L+ EGYMDV+ L+Q GF VA LGTACT
Sbjct: 241 LNSPETPLFNKGSELYGLFEARLAIREHKYALVVEGYMDVVALAQLGFPNAVATLGTACT 300
Query: 181 STHIKKILFYTNSIIFSF 198
H++K+L T++++FSF
Sbjct: 301 PIHVQKLLRQTDTVVFSF 318
>gi|334125659|ref|ZP_08499648.1| DNA primase [Enterobacter hormaechei ATCC 49162]
gi|333387122|gb|EGK58326.1| DNA primase [Enterobacter hormaechei ATCC 49162]
Length = 581
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ LK+S + A +L KRGL++++I RF +GYAP W N L + + + +L +
Sbjct: 126 FYQQSLKHSAAEPARQYLNKRGLSDDVIARFAIGYAPPGWDNVLKRFGGNSEDRKSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPPRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLMPQVDLST 384
>gi|381402874|ref|ZP_09927558.1| DNA primase [Pantoea sp. Sc1]
gi|380736073|gb|EIB97136.1| DNA primase [Pantoea sp. Sc1]
Length = 581
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 203/371 (54%), Gaps = 24/371 (6%)
Query: 18 AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASSGLVVDKIINKVNQ 76
A ++L +RGL+ EII F +GYAP W N L + + +L +G++V
Sbjct: 139 ARDYLDRRGLSAEIIDHFAIGYAPAGWDNVLKRFGKQSEDRESLMEAGMLVSN------- 191
Query: 77 SPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE-AKYINSPETPLFHKSNEL 135
+K + YDRFR R+MFPI++ G++IGFGGR++ SNE KY+NSPETP+FHK +L
Sbjct: 192 ----DKGRTYDRFRDRVMFPIRDKRGRVIGFGGRVL--SNETPKYLNSPETPIFHKGRQL 245
Query: 136 YGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNSII 195
YGL+EA + +L+ EGYMDV+ L+Q+G VA LGT+ T+ HI+ + T+++I
Sbjct: 246 YGLYEAVKNHPEPARLLVVEGYMDVVALAQYGIDYAVASLGTSTTAEHIQLLFRSTDTVI 305
Query: 196 FSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKVLEA 255
+DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +RK G F ++ +A
Sbjct: 306 CCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPDTLVRKEGKAAFEARMEQA 365
Query: 256 MSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIISSLS-KIIKVSF 314
M L F + ++ +L + + L IP +LR + L K+ +
Sbjct: 366 MPLSSFLFDSLLPQVDLSSRDGKARLSTLALPLITQIP-GETLRIYMRQELGNKLGILDD 424
Query: 315 NEINNLF-KINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEINSEDMIIFSKCS 373
N++ L K+ TS K ++ LLI P L + + S D + SK
Sbjct: 425 NQLEKLMPKLATSGTAPVAPPLKRT----TMRVLIALLIQNPQLASMVPSLDGLSESKMP 480
Query: 374 QNYVKMFFQLI 384
+ +F +L+
Sbjct: 481 G--LPLFIELV 489
>gi|449475193|ref|XP_004154401.1| PREDICTED: DNA primase-like [Cucumis sativus]
Length = 580
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ LK+S + A +L KRGL++++I RF +GYAP W N L + + + +L +
Sbjct: 125 FYQQSLKHSAAEPARQYLNKRGLSDDVIARFAIGYAPPGWDNVLKRFGGNSEDRKSLIDA 184
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 185 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 232
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 233 PETDIFHKGRQLYGLYEAQQDNAEPPRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 292
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 293 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 352
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 353 GKAAFEARMEQAQPLSTFLFNSLMPQVDLST 383
>gi|419959929|ref|ZP_14475977.1| DNA primase [Enterobacter cloacae subsp. cloacae GS1]
gi|388605209|gb|EIM34431.1| DNA primase [Enterobacter cloacae subsp. cloacae GS1]
Length = 581
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ LK+S + A +L KRGL++++I RF +GYAP W N L + + + +L +
Sbjct: 126 FYQQSLKHSAAEPARQYLNKRGLSDDVIARFAIGYAPPGWDNVLKRFGGNSEDRKSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPPRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLMPQVDLST 384
>gi|110834923|ref|YP_693782.1| DNA primase [Alcanivorax borkumensis SK2]
gi|110648034|emb|CAL17510.1| DNA primase [Alcanivorax borkumensis SK2]
Length = 652
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 186/317 (58%), Gaps = 17/317 (5%)
Query: 4 ASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINT 59
A FY QL+ + E A+N+LK RGL+ EI +F +G+AP + N +N + L ++
Sbjct: 123 AEKFYVQQLRQAPERQKAVNYLKNRGLSGEIAKQFAIGFAPPGYDNLINGLSLTETSLEQ 182
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
+ GL+V + N + YD+FR RI+FPI+++ G+ IGFGGR++ D + K
Sbjct: 183 AVTGGLLVRREDNN----------RTYDKFRDRIIFPIRDSRGRTIGFGGRVLGDG-KPK 231
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGL+E + + ++S + + EGYMDVI L+Q G VA LGTA
Sbjct: 232 YLNSPETPVFHKGQELYGLWEWRQSRDRSDRLYVVEGYMDVIALTQHGVPNVVATLGTAT 291
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T H +K+ N +I FDGD+AG RAA RALE L D K ++FLFLPD DPD+
Sbjct: 292 TEDHARKLFRQVNEVILCFDGDKAGVRAAWRALESLLPALDDGKQVRFLFLPDGEDPDTL 351
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKII-PLSSS 297
+R+ G + +A +L + + +L+T+ + ++ + YL K P+ +
Sbjct: 352 VRQQGPEALRALTDKADALSTYLFRHLSEGLDLETVDGRVRLARLALPYLDKPAGPVYRA 411
Query: 298 LRFKIISSLSKIIKVSF 314
L + +S L+++ K S
Sbjct: 412 LLTEELSRLTRLDKESL 428
>gi|219871371|ref|YP_002475746.1| DNA primase [Haemophilus parasuis SH0165]
gi|219691575|gb|ACL32798.1| DNA primase [Haemophilus parasuis SH0165]
Length = 582
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 134/388 (34%), Positives = 215/388 (55%), Gaps = 21/388 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +L++RGL++EII RF +G++PN A++ V + N N
Sbjct: 127 AKFYQQQLTQDSASQAYLQQRGLSQEIIDRFEIGFSPN---AMDAVLRRFGN-NPEEVQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ +++K ++ V YDRFR R+MFPI++ G++I FGGR++ D + KY+NSP
Sbjct: 183 LLDTGMLSKNDRGNV------YDRFRNRVMFPIRDKRGRVIAFGGRVLGDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
E+ +HK NELYGL++A E ++ + EGYMDV+ L+QFG VA LGTA T I
Sbjct: 236 ESATYHKGNELYGLYQALQHNENPDFLFVVEGYMDVVALAQFGVNNAVASLGTATTGEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + T +I +DGD+AGR AA RALE L Y D + +KF+FLPD DPD++IR G
Sbjct: 296 QLMFRSTEQVICCYDGDRAGRDAAWRALENALPYLHDGRQLKFIFLPDGEDPDTFIRSQG 355
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + +A++L +F + ++ +L T + K L K IP LR + +
Sbjct: 356 KEGFERYLEQALTLSEFLFDSLLTQVDLSTKEGKSKLASLALPLIKRIP-GEMLRLYLRN 414
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISY----PSLINE 360
L + + + + + S+ +T K++ P IE M+LLI+ P L+
Sbjct: 415 ILGQKLGI-LDPTQLEVMLPQKSV--ETAPKRHNMP-HIERTPMRLLIALLLQNPHLVQN 470
Query: 361 INSEDMIIFSKCSQNYVKMFFQLIDTIH 388
+ ED+ + +F +L++ H
Sbjct: 471 V-PEDVTFLQSLQEKGFDLFLELVNICH 497
>gi|420375357|ref|ZP_14875228.1| DNA primase [Shigella flexneri 1235-66]
gi|391312753|gb|EIQ70360.1| DNA primase [Shigella flexneri 1235-66]
Length = 581
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 168/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + A +L+KRGL+ ++I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLMQPAATPARQYLEKRGLSSDVITRFAIGFAPPGWDNVLKRFGGNAENRKSLVDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNADPQRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +A+ L F ++ +L T
Sbjct: 354 GKEAFEARMEQALPLSAFLFNSLLPQVDLST 384
>gi|77163591|ref|YP_342116.1| DNA primase [Nitrosococcus oceani ATCC 19707]
gi|76881905|gb|ABA56586.1| DNA primase [Nitrosococcus oceani ATCC 19707]
Length = 574
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 124/371 (33%), Positives = 202/371 (54%), Gaps = 30/371 (8%)
Query: 1 MICASDFYKIQLKNSK---EAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ CA++FY+ QL+ S + +L++RGL+ II F LG+AP WNAL L Y
Sbjct: 119 LACAAEFYQQQLEASAYQGQVKAYLRERGLSGPIIAEFGLGFAPPRWNAL----LHYTRP 174
Query: 58 NT---LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKD 114
+ L ++GL + K ++ YDRFR R++FPI + G++IGFGGRL+ D
Sbjct: 175 SLKSYLQAAGLTISKGEDRY-----------YDRFRDRLIFPIHDYRGRVIGFGGRLLGD 223
Query: 115 SNEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAI 174
+ KY+NSPET LFHK ELYGL++ + ++ + +L+ EGYMDV+ L++ VA
Sbjct: 224 GS-PKYLNSPETALFHKGRELYGLYQVRKSLHRCDRLLVVEGYMDVLALAEHKIRYAVAT 282
Query: 175 LGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKY 234
LGTA TS H+ ++ T ++IF FDGD+AG +AA RALE L + + ++F+FLP
Sbjct: 283 LGTATTSDHLTRLFRITPAVIFCFDGDRAGYQAAWRALETALPLLSQGRQVQFMFLPQGE 342
Query: 235 DPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL 294
DPD+ +R G F ++ EA+ L F L + NL ++ + L IP
Sbjct: 343 DPDTMVRAEGQTAFEARLAEAVPLSDFLLNNLRQKVNLSSVDGCARLVELARPLLARIPP 402
Query: 295 S--SSLRFKIISSLSKIIKVSFNEINNLFKI-NTSSIKHKTIEKKNIQPICIEYQIMKLL 351
+ ++ L++I + + I +L +++ + +E+ P + + +L
Sbjct: 403 GVYQDMLLARLAELAQIEQTTL--IRHLSPGKKPTAVPLRRLEQGAASPT---RRAVAIL 457
Query: 352 ISYPSLINEIN 362
+ P +I ++
Sbjct: 458 LQRPKMIQWVD 468
>gi|401765266|ref|YP_006580273.1| DNA primase [Enterobacter cloacae subsp. cloacae ENHKU01]
gi|400176800|gb|AFP71649.1| DNA primase [Enterobacter cloacae subsp. cloacae ENHKU01]
Length = 581
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ LK+S + A +L KRGL++++I RF +GYAP W N L + + + +L +
Sbjct: 126 FYQQSLKHSAAEPARQYLTKRGLSDDVIARFAIGYAPPGWDNVLKRFGGNSEDRKSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPPRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMDQAQPLSTFLFNSLMPQVDLST 384
>gi|354725248|ref|ZP_09039463.1| DNA primase [Enterobacter mori LMG 25706]
Length = 581
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ LK+S + A +L KRGL++++I RF +GYAP W N L + + + +L +
Sbjct: 126 FYQQSLKHSAAEPARQYLNKRGLSDDVIARFAIGYAPPGWDNVLKRFGGNSEDRKSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPPRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLMPQVDLST 384
>gi|254435374|ref|ZP_05048881.1| DNA primase [Nitrosococcus oceani AFC27]
gi|207088485|gb|EDZ65757.1| DNA primase [Nitrosococcus oceani AFC27]
Length = 584
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 124/371 (33%), Positives = 202/371 (54%), Gaps = 30/371 (8%)
Query: 1 MICASDFYKIQLKNSK---EAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ CA++FY+ QL+ S + +L++RGL+ II F LG+AP WNAL L Y
Sbjct: 129 LACAAEFYQQQLEASAYQGQVKAYLRERGLSGPIIAEFGLGFAPPRWNAL----LHYTRP 184
Query: 58 NT---LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKD 114
+ L ++GL + K ++ YDRFR R++FPI + G++IGFGGRL+ D
Sbjct: 185 SLKSYLQAAGLTISKGEDRY-----------YDRFRDRLIFPIHDYRGRVIGFGGRLLGD 233
Query: 115 SNEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAI 174
+ KY+NSPET LFHK ELYGL++ + ++ + +L+ EGYMDV+ L++ VA
Sbjct: 234 GS-PKYLNSPETALFHKGRELYGLYQVRKSLHRCDRLLVVEGYMDVLALAEHKIRYAVAT 292
Query: 175 LGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKY 234
LGTA TS H+ ++ T ++IF FDGD+AG +AA RALE L + + ++F+FLP
Sbjct: 293 LGTATTSDHLTRLFRITPAVIFCFDGDRAGYQAAWRALETALPLLSQGRQVQFMFLPQGE 352
Query: 235 DPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL 294
DPD+ +R G F ++ EA+ L F L + NL ++ + L IP
Sbjct: 353 DPDTMVRAEGQTAFEARLAEAVPLSDFLLNNLRQKVNLSSVDGCARLVELARPLLARIPP 412
Query: 295 S--SSLRFKIISSLSKIIKVSFNEINNLFKI-NTSSIKHKTIEKKNIQPICIEYQIMKLL 351
+ ++ L++I + + I +L +++ + +E+ P + + +L
Sbjct: 413 GVYQDMLLARLAELAQIEQTTL--IRHLSPGKKPTAVPLRRLEQGAASPT---RRAVAIL 467
Query: 352 ISYPSLINEIN 362
+ P +I ++
Sbjct: 468 LQRPKMIQWVD 478
>gi|283836398|ref|ZP_06356139.1| DNA primase [Citrobacter youngae ATCC 29220]
gi|291067772|gb|EFE05881.1| DNA primase [Citrobacter youngae ATCC 29220]
Length = 581
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 168/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + A +L+KRGL+ ++I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLMQPAATPARQYLEKRGLSSDVITRFAIGFAPPGWDNVLKRFGGNPENRKSLVDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNADPQRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +A+ L F ++ +L T
Sbjct: 354 GKEAFEARMEQALPLSAFLFNSLLPQVDLST 384
>gi|383816575|ref|ZP_09971970.1| DNA primase [Serratia sp. M24T3]
gi|383294569|gb|EIC82908.1| DNA primase [Serratia sp. M24T3]
Length = 581
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 172/273 (63%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S+FY+ LK + A +L +RGL++E+I F +G+AP W NAL + ++ ++L
Sbjct: 124 SEFYQQSLKQPAGEPARKYLTQRGLSDEVINHFAIGFAPAGWDNALKRFGKSADDRSSLT 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G+++ E+ + YDRFR R+MFPI++ G++I FGGR++ D+ KY+
Sbjct: 184 DAGMLITN-----------EQGRSYDRFRERVMFPIRDKRGRVIAFGGRVLGDAL-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 232 NSPETEIFHKGRQLYGLYEAQLNHPTPAKLLVVEGYMDVVALAQFGVDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 EHIQLLFRATDTVICCYDGDRAGREAAWRALETALPYLQDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G + F +++ EA S+ F + ++ +L +
Sbjct: 352 KEGKEAFEQRMEEAHSISTFLFDTLMPQVDLTS 384
>gi|167855426|ref|ZP_02478191.1| DNA primase [Haemophilus parasuis 29755]
gi|167853420|gb|EDS24669.1| DNA primase [Haemophilus parasuis 29755]
Length = 582
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 134/388 (34%), Positives = 215/388 (55%), Gaps = 21/388 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +L++RGL++EII RF +G++PN A++ V + N N
Sbjct: 127 AKFYQQQLTQDSASQAYLQQRGLSQEIIDRFEIGFSPN---AMDAVLRRFGN-NPEEVQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ +++K ++ V YDRFR R+MFPI++ G++I FGGR++ D + KY+NSP
Sbjct: 183 LLDTGMLSKNDRGNV------YDRFRNRVMFPIRDKRGRVIAFGGRVLGDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
E+ +HK NELYGL++A E ++ + EGYMDV+ L+QFG VA LGTA T I
Sbjct: 236 ESATYHKGNELYGLYQALQHNENPDFLFVVEGYMDVVALAQFGVNNAVASLGTATTGEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + T +I +DGD+AGR AA RALE L Y D + +KF+FLPD DPD++IR G
Sbjct: 296 QLMFRSTEQVICCYDGDRAGRDAAWRALENALSYLHDGRQLKFIFLPDGEDPDTFIRSQG 355
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + +A++L +F + ++ +L T + K L K IP LR + +
Sbjct: 356 KEGFERYLEQALTLSEFLFDSLLTQVDLSTKEGKSKLASLALPLIKRIP-GEMLRLYLRN 414
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISY----PSLINE 360
L + + + + + S+ +T K++ P IE M+LLI+ P L+
Sbjct: 415 ILGQKLGI-LDPTQLEVMLPQKSV--ETAPKRHNMP-HIERTPMRLLIALLLQNPHLVQN 470
Query: 361 INSEDMIIFSKCSQNYVKMFFQLIDTIH 388
+ ED+ + +F +L++ H
Sbjct: 471 V-PEDVTFLQSLQEKGFDLFLELVNICH 497
>gi|423122212|ref|ZP_17109896.1| DNA primase [Klebsiella oxytoca 10-5246]
gi|376392841|gb|EHT05503.1| DNA primase [Klebsiella oxytoca 10-5246]
Length = 581
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 164/271 (60%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + A +L KRGL+ E+I RF +GYAP W N L + + N +L +
Sbjct: 126 FYQQSLMQPAADPARQYLAKRGLSSEVIARFAIGYAPPGWDNVLKRFGGNQENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V +K + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DKGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPPRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN +I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNQVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLLPQVDLST 384
>gi|261820104|ref|YP_003258210.1| DNA primase [Pectobacterium wasabiae WPP163]
gi|421081029|ref|ZP_15541943.1| Putative DNA primase [Pectobacterium wasabiae CFBP 3304]
gi|261604117|gb|ACX86603.1| DNA primase [Pectobacterium wasabiae WPP163]
gi|385870289|gb|AFI88809.1| DNA primase [Pectobacterium sp. SCC3193]
gi|401704039|gb|EJS94248.1| Putative DNA primase [Pectobacterium wasabiae CFBP 3304]
Length = 584
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 202/365 (55%), Gaps = 28/365 (7%)
Query: 5 SDFYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ L S A+ +L++RGL+ ++I F +G+AP W N L + + ++ +TL
Sbjct: 124 SGFYQQALTQSVGTPALQYLQQRGLSADVISHFAIGFAPPGWDNVLKRFGRNNDDRSTLN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V ++ + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------DQGRTYDRFRERVMFPIRDKRGRVIAFGGRVLGDGT-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 232 NSPETEIFHKGRQLYGLYEAQQNHTELKRLLVVEGYMDVVALAQFGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+ ++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 DHIQLLFRATDLVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G +F +++ A+ L QF E + ++ + K + L +P +LR
Sbjct: 352 KEGKAVFEQRMEHALPLSQFLFETLQQQVDMSSPDGRTKLSTLVLPLIGQVP-GETLRLY 410
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEK-KNIQPICIEYQIMK----LLISYPS 356
+ L N++ L + K E+ ++ QP ++ M+ LL+ P
Sbjct: 411 LRQQLG-------NKLGILDDSQLDRLLPKVAEQAQSYQPPQLKVTTMRILVGLLVQNPR 463
Query: 357 LINEI 361
L E+
Sbjct: 464 LAAEV 468
>gi|359445898|ref|ZP_09235612.1| DNA primase [Pseudoalteromonas sp. BSi20439]
gi|358040301|dbj|GAA71861.1| DNA primase [Pseudoalteromonas sp. BSi20439]
Length = 583
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 135/370 (36%), Positives = 210/370 (56%), Gaps = 31/370 (8%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M+ A+ FY+ QLK NS+ I+++K RGL+ + +F +GYAP+EW L +
Sbjct: 121 MLHAARFYQHQLKHHSNSETVIDYVKGRGLSGATVKKFMMGYAPSEWEGLCQQL----GR 176
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
N LV K+ ++ ++P K++D FR R+MFPI++ G++I FGGR+++
Sbjct: 177 NQEQKEQLVELKLASE--KTPG----KQFDFFRDRLMFPIRDKRGRVIAFGGRVMQADQG 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+EAK A +K +VLI EGYMDV+ L++ G VA LGT
Sbjct: 231 PKYLNSPETRIFHKGFELYGLYEAKQAHKKLDHVLIVEGYMDVVALAEQGIEYAVAALGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A TS H+ + T+ +I +DGD+AG+ AA RALE L Y D K + F+FLPD DPD
Sbjct: 291 ATTSEHMHTLFRTTDKVICCYDGDRAGKDAAWRALENALPYLNDGKALHFVFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL--- 294
S +++ G + F +++ A + ++ N K I D+ + L +PL
Sbjct: 351 SLVQQEGKEAFEQRLENADDFTK-----VLFNKLSKEI-DLTLDSGKAKLLSAALPLIEK 404
Query: 295 --SSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKK-NIQPICIEYQIMKLL 351
S + I+ L ++I + ++NN K + + + IE+K I P+ Q + +L
Sbjct: 405 IPSEFYQENILEQLGRLIGRTREQLNNHLK---TPKQQQAIERKFKITPM---RQAIGIL 458
Query: 352 ISYPSLINEI 361
I +P+L +
Sbjct: 459 IQHPNLAKSV 468
>gi|308050978|ref|YP_003914544.1| DNA primase [Ferrimonas balearica DSM 9799]
gi|307633168|gb|ADN77470.1| DNA primase [Ferrimonas balearica DSM 9799]
Length = 595
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 114/280 (40%), Positives = 167/280 (59%), Gaps = 19/280 (6%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M A+ +Y+ QL+ E I +LK+RGL+ E + RF +G+AP W++L N
Sbjct: 131 MNWAARYYQQQLRQHPERERVIEYLKQRGLDGETVQRFGIGFAPPGWDSLLSQQRSNNQA 190
Query: 58 NTL-ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
L A G++++K E KRYDRFR R+MFPI++ G++I FGGR++ D +
Sbjct: 191 QKLLAECGMLIEK-----------EGGKRYDRFRDRLMFPIQDRRGRVIAFGGRVLGD-D 238
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPETP+FHK ELYGL+ + A VL+ EGYMDV+ L+Q G VA LG
Sbjct: 239 TPKYLNSPETPIFHKGRELYGLYPLRQASRNPERVLVVEGYMDVVALAQHGIDYAVASLG 298
Query: 177 TACTSTHIKKILFYTNS--IIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKY 234
T+ T+ HI ++L T S ++ +DGD+AGR AA RALE L K +KF+FLPD
Sbjct: 299 TSTTADHI-QVLMRTASKEVVCCYDGDRAGREAAWRALETALPMLKSGKALKFMFLPDGE 357
Query: 235 DPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
DPD+ +R+ G + F ++ +AM L + + + N+ +
Sbjct: 358 DPDTLVRQEGKEAFEARIEKAMPLSDYLFSHLSQDANMSS 397
>gi|354599219|ref|ZP_09017236.1| DNA primase [Brenneria sp. EniD312]
gi|353677154|gb|EHD23187.1| DNA primase [Brenneria sp. EniD312]
Length = 584
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 108/265 (40%), Positives = 169/265 (63%), Gaps = 15/265 (5%)
Query: 5 SDFYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ L + A+++L++RGL+ E+I F +G+AP W NAL + + ++ + L
Sbjct: 124 SSFYQQMLSQATGAPALHYLQQRGLSAEVISHFAIGFAPPGWDNALKRFGRNNDDRSALN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V ++ + YDRFR R+MFPI++ G++I FGGR++ DS KY+
Sbjct: 184 DAGMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIAFGGRVLGDSV-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 232 NSPETEIFHKGRQLYGLYEAQQNHPELKRLLVVEGYMDVVALAQFGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+ ++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 DHIQLLFRVTDQVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEI 266
K G +F +++ +A+ L QF E +
Sbjct: 352 KEGKVLFEQRMEQALPLSQFLFETL 376
>gi|422015789|ref|ZP_16362382.1| DNA primase [Providencia burhodogranariea DSM 19968]
gi|414096503|gb|EKT58160.1| DNA primase [Providencia burhodogranariea DSM 19968]
Length = 581
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 208/356 (58%), Gaps = 22/356 (6%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY L + + +A ++L +RGL+ E+I F++G+AP W N L K + ++ L +
Sbjct: 126 FYHSALSHPSANKAKDYLSQRGLSVEVIEHFSIGFAPPGWDNLLKKFAVAPDSRKQLDEA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V +K YDRFR RIMFPI++ G++I FGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DKGHMYDRFRERIMFPIRDRRGRVIAFGGRVLGDAI-PKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +L+GL+EA + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLFGLYEATQNSSELAKLLVVEGYMDVVALAQYGIRYAVASLGTSTTAEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T++++ +DGD+AGR AA RALE L Y TD + ++F+FLPD DPDS +RK
Sbjct: 294 IQLLYRSTDTVVCCYDGDRAGREAAWRALENALPYLTDGRQLRFMFLPDGEDPDSLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK-SKYNIEYLFKIIPLSSSLRFKI 302
G ++F +++ +A +L F + ++ +LKT + K SK I L K IP +LR +
Sbjct: 354 GKEVFEERMNDAKTLSSFLFDSLVPQVDLKTQEGRAKFSKLAIP-LIKQIP-GETLRLYM 411
Query: 303 ISSLSKIIKVSFNEINNLFK-INTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
L I + +I+ + I+ S + + ++P + ++ LL+ P+L
Sbjct: 412 AQELGNFIGIP--DISQVLAMIDRESTESVGYQAPKLKPTTMRI-LIALLVQNPNL 464
>gi|423110409|ref|ZP_17098104.1| DNA primase [Klebsiella oxytoca 10-5243]
gi|376379568|gb|EHS92320.1| DNA primase [Klebsiella oxytoca 10-5243]
Length = 580
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 172/273 (63%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ N++ A +L++RGL+ E++ +F +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSFNQPNAEPARQYLEQRGLSAEVVQQFAIGFAPPGWDNALKRFGGNVDNRKLLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------DQGRTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQHQAEPPRLLVVEGYMDVVALAQYGINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHILFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G + F ++ +A L F ++ +L +
Sbjct: 352 KEGKEAFEARIEQAQPLSMFLFNSLLPQVDLSS 384
>gi|359439240|ref|ZP_09229217.1| DNA primase [Pseudoalteromonas sp. BSi20311]
gi|358026067|dbj|GAA65466.1| DNA primase [Pseudoalteromonas sp. BSi20311]
Length = 583
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 135/370 (36%), Positives = 210/370 (56%), Gaps = 31/370 (8%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M+ A+ FY+ QLK NS+ I+++K RGL+ + +F +GYAP+EW L +
Sbjct: 121 MLHAARFYQHQLKHHSNSETVIDYVKGRGLSGATVKKFMMGYAPSEWEGLCQQL----GR 176
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
N LV K+ ++ ++P K++D FR R+MFPI++ G++I FGGR+++
Sbjct: 177 NQEQKEQLVELKLASE--KTPG----KQFDFFRDRLMFPIRDKRGRVIAFGGRVMQADQG 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+EAK A +K +VLI EGYMDV+ L++ G VA LGT
Sbjct: 231 PKYLNSPETRIFHKGFELYGLYEAKQAHKKLDHVLIVEGYMDVVALAEQGIEYAVAALGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A TS H+ + T+ +I +DGD+AG+ AA RALE L Y D K + F+FLPD DPD
Sbjct: 291 ATTSEHMHTLFRTTDKVICCYDGDRAGKDAAWRALENALPYLNDGKALHFVFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL--- 294
S +++ G + F +++ A + ++ N K I D+ + L +PL
Sbjct: 351 SLVQQEGKEAFEQRLENADDFTK-----VLFNKLSKEI-DLTLDSGKAKLLSAALPLIEK 404
Query: 295 --SSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKK-NIQPICIEYQIMKLL 351
S + I+ L ++I + ++NN K + + + IE+K I P+ Q + +L
Sbjct: 405 IPSEFYQENILEQLGRLIGRTREQLNNHLK---TPKQQQAIERKFKITPM---RQAIGIL 458
Query: 352 ISYPSLINEI 361
I +P+L +
Sbjct: 459 IQHPNLAKSV 468
>gi|88810992|ref|ZP_01126248.1| DNA primase [Nitrococcus mobilis Nb-231]
gi|88791531|gb|EAR22642.1| DNA primase [Nitrococcus mobilis Nb-231]
Length = 581
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 110/275 (40%), Positives = 165/275 (60%), Gaps = 18/275 (6%)
Query: 4 ASDFYKIQL---KNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
A++ Y+ L + A+ +L+ RGLN EI RF LG+AP WN L + ++++ L
Sbjct: 119 AAELYRHWLHRHPQGRRALGYLEARGLNAEIAARFELGFAPPGWNHLARAISEHHD---L 175
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+ GL+V + E + YDRFR RIMFPI++ G+IIGFGGR + + + KY
Sbjct: 176 VAVGLLVQR-----------EGKRTYDRFRDRIMFPIRDQRGRIIGFGGRSLGE-GQPKY 223
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSP++P+FHK ELYGL + + + +LI EGYMDV+ L+Q+G + VA LGTA +
Sbjct: 224 LNSPDSPIFHKGRELYGLDKVLESDRRPTDILIVEGYMDVVALAQYGLPRVVATLGTATS 283
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+T ++++ T +IF FDGD AGR+AA RAL L + +FLFLP+ DPDS++
Sbjct: 284 TTQVERLFRLTRDLIFCFDGDAAGRQAAWRALVNTLPGLQGGRQARFLFLPEGEDPDSFV 343
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTI 275
R G + + EA L F LE + + ++ +I
Sbjct: 344 RSHGQAATAAVLREAQPLSDFLLERLTVGVDMTSI 378
>gi|417520653|ref|ZP_12182524.1| DNA primase [Salmonella enterica subsp. enterica serovar Uganda
str. R8-3404]
gi|353643426|gb|EHC87621.1| DNA primase [Salmonella enterica subsp. enterica serovar Uganda
str. R8-3404]
Length = 568
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 110/273 (40%), Positives = 170/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W N L + + +N L
Sbjct: 111 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNTLKRFGNNSDNKALLL 170
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 171 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 218
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 219 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 278
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 279 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 338
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 339 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 371
>gi|161506226|ref|YP_001573338.1| DNA primase [Salmonella enterica subsp. arizonae serovar
62:z4,z23:- str. RSK2980]
gi|160867573|gb|ABX24196.1| hypothetical protein SARI_04419 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 580
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/273 (40%), Positives = 170/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYG +EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGFYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 352 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 384
>gi|403057013|ref|YP_006645230.1| DNA primase (bacterial type) [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402804339|gb|AFR01977.1| DNA primase (bacterial type) [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 584
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 140/456 (30%), Positives = 240/456 (52%), Gaps = 39/456 (8%)
Query: 5 SDFYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ L S A+ +L++RGL+ E+I F +G+AP W N L + + ++ +TL
Sbjct: 124 SGFYQQALSQSVGTPALQYLQQRGLSAEVISHFAIGFAPPGWDNVLKRFGRNNDDRSTLN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V ++ + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------DQGRTYDRFRERVMFPIRDKRGRVIAFGGRVLGDGT-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + + +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 232 NSPETEIFHKGRQLYGLYEAQQSHPELKRLLVVEGYMDVVALAQFGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+ ++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 DHIQLLFRATDLVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
+ G F +++ +A+ L QF E + ++ + K L +P +LR
Sbjct: 352 QEGKVAFEQRMEQALPLSQFLFETLQQQVDMSSPDGRTKLSTLALPLIGQVP-GETLRLY 410
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEK-KNIQPICIEYQIMK----LLISYPS 356
+ L N++ L + K E+ ++ QP ++ M+ LL+ P
Sbjct: 411 LRQQLG-------NKLGILDDSQLDRLLPKVAEQAQSYQPPQLKVTTMRILIGLLVQNPR 463
Query: 357 LINEINSEDMIIFSKCSQNYVKMFFQLIDT--------IHIFKNDIDHSKFIKYLKKINK 408
L E+ + + + +F L+ T + + SK+ K L+ +
Sbjct: 464 LAAEVPDLALEGIEEGKVAGLSLFQDLVKTCNASPGMNMGLLLEKYRDSKYRKQLETM-A 522
Query: 409 NFESIIVKIQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
++ +IV+ + + ++ I +A+ L D + K R+ +
Sbjct: 523 SWNHMIVEEELDEKFRISLAE--LYDQLLKQRQETL 556
>gi|77359316|ref|YP_338891.1| DNA primase [Pseudoalteromonas haloplanktis TAC125]
gi|76874227|emb|CAI85448.1| DNA primase [Pseudoalteromonas haloplanktis TAC125]
Length = 583
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/364 (36%), Positives = 202/364 (55%), Gaps = 19/364 (5%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M+ + FY+ QLK NS I ++K RGL+ EI+ +F +GYAP+EW+ L
Sbjct: 121 MLHTARFYQHQLKHHSNSAAVIEYVKGRGLSGEIVKKFMIGYAPSEWDGLCLQL----GR 176
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
N LV K+ ++ ++P +++D FR R+MFPI++ G+++ FGGR+++
Sbjct: 177 NKEQKEQLVELKLASE--KTPG----RQFDFFRDRLMFPIRDKRGRVVAFGGRVMQADQG 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+EAK A +K +VLI EGYMDV+ L++ G VA LGT
Sbjct: 231 PKYLNSPETRIFHKGFELYGLYEAKQAHKKLDHVLIVEGYMDVVALAEQGIEYAVAALGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A TS H+ + T+ +I +DGD+AGR AA RALE L Y D K + F+FLPD DPD
Sbjct: 291 ATTSEHMHTLFRTTDKVICCYDGDRAGRDAAWRALENALPYLNDGKALNFVFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
S ++ G F +++ A + ++ L +L K L + IP S
Sbjct: 351 SLVQAEGKDKFEQRLNAADDFTKVLFNKLSLEIDLTLDSGKAKLLSAALPLIEKIP-SEF 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
+ I+ L ++I + ++NN ++ T +H K I P+ Q + +LI +P +
Sbjct: 410 YQENILEQLGRLIGRTREQLNN--RLKTPKQQHSIERKFKITPM---RQAIGILIQHPQM 464
Query: 358 INEI 361
+
Sbjct: 465 AKSV 468
>gi|152971990|ref|YP_001337099.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|150956839|gb|ABR78869.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
Length = 581
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 165/271 (60%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + A +L KRGL+ E+I RF +GYAP W N L + + N +L +
Sbjct: 126 FYQQSLMQPAADPARQYLAKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNPEPPRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLLPQVDLST 384
>gi|399522533|ref|ZP_10763196.1| DNA primase [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399109397|emb|CCH39757.1| DNA primase [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 667
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 183/323 (56%), Gaps = 17/323 (5%)
Query: 3 CASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
A++ Y+ LK+ + A+++LK RGL+ EI F +G+AP W N L ++ D
Sbjct: 122 AAAEHYRQALKSHPQRKYAVDYLKGRGLSGEIARDFGIGFAPPGWDNLLKQLGADALQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ N +RYDRFR RIMFPI+++ G++I FGGR++ D ++
Sbjct: 182 VMIDAGLLIENAENG----------RRYDRFRDRIMFPIRDSRGRVIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLYEARKHNRDLDEIMVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGD AGR AA RALE L D + +FLFLPD DPD+
Sbjct: 291 TSEEHLKRLFRIVPSVLFCFDGDAAGRNAAWRALESTLPSLQDGRRARFLFLPDGEDPDT 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F ++ + ++++ L IP ++
Sbjct: 351 LVRAEGTDAFRARINQHAQPLADYFFHQLCEEADPRSLEGKAHLVTLAAPLIDKIP-GNN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNL 320
LR + LS+I +S ++ +
Sbjct: 410 LRALMRQRLSEITGLSSEALSQV 432
>gi|165761277|pdb|3B39|A Chain A, Structure Of The Dnag Primase Catalytic Domain Bound To
Ssdna
gi|165761278|pdb|3B39|B Chain B, Structure Of The Dnag Primase Catalytic Domain Bound To
Ssdna
Length = 322
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 19 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 78
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 79 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 126
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 127 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 186
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA ALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 187 IQLLFRATNNVICCYDGDRAGRDAAWCALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 246
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 247 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 277
>gi|238896570|ref|YP_002921313.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
gi|330003819|ref|ZP_08304769.1| DNA primase [Klebsiella sp. MS 92-3]
gi|365140531|ref|ZP_09346586.1| DNA primase [Klebsiella sp. 4_1_44FAA]
gi|386036623|ref|YP_005956536.1| DNA primase [Klebsiella pneumoniae KCTC 2242]
gi|402778932|ref|YP_006634478.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|419764768|ref|ZP_14291007.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae DSM 30104]
gi|424832462|ref|ZP_18257190.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|425074853|ref|ZP_18477956.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425083267|ref|ZP_18486364.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|425085489|ref|ZP_18488582.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|425093350|ref|ZP_18496434.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|428931829|ref|ZP_19005419.1| DNA primase [Klebsiella pneumoniae JHCK1]
gi|449047214|ref|ZP_21730712.1| DNA primase [Klebsiella pneumoniae hvKP1]
gi|238548895|dbj|BAH65246.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
gi|328536803|gb|EGF63115.1| DNA primase [Klebsiella sp. MS 92-3]
gi|339763751|gb|AEJ99971.1| DNA primase [Klebsiella pneumoniae KCTC 2242]
gi|363653847|gb|EHL92796.1| DNA primase [Klebsiella sp. 4_1_44FAA]
gi|397741896|gb|EJK89115.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae DSM 30104]
gi|402539881|gb|AFQ64030.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|405595056|gb|EKB68446.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405599586|gb|EKB72762.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|405607521|gb|EKB80490.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405610895|gb|EKB83684.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|414709904|emb|CCN31608.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|426307763|gb|EKV69839.1| DNA primase [Klebsiella pneumoniae JHCK1]
gi|448877466|gb|EMB12430.1| DNA primase [Klebsiella pneumoniae hvKP1]
Length = 581
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 165/271 (60%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + A +L KRGL+ E+I RF +GYAP W N L + + N +L +
Sbjct: 126 FYQQSLMQPAADPARQYLAKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNPEPPRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLLPQVDLST 384
>gi|423116424|ref|ZP_17104115.1| DNA primase [Klebsiella oxytoca 10-5245]
gi|376378606|gb|EHS91365.1| DNA primase [Klebsiella oxytoca 10-5245]
Length = 580
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 172/273 (63%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ N++ A +L++RGL+ E++ +F +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSFTQPNAEPARQYLEQRGLSAEVVQQFAIGFAPPGWDNALKRFGGNVDNRKLLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------DQGRTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQHQAEPPRLLVVEGYMDVVALAQYGINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHILFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G + F ++ +A L F ++ +L +
Sbjct: 352 KEGKEAFEARMEQAQPLSMFLFNSLLPQVDLSS 384
>gi|262042264|ref|ZP_06015429.1| DNA primase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
gi|259040328|gb|EEW41434.1| DNA primase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
Length = 581
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 165/271 (60%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + A +L KRGL+ E+I RF +GYAP W N L + + N +L +
Sbjct: 126 FYQQSLMQLAADPARQYLAKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNPEPPRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLLPQVDLST 384
>gi|50119629|ref|YP_048796.1| DNA primase [Pectobacterium atrosepticum SCRI1043]
gi|49610155|emb|CAG73595.1| DNA primase [Pectobacterium atrosepticum SCRI1043]
Length = 584
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/265 (40%), Positives = 166/265 (62%), Gaps = 15/265 (5%)
Query: 5 SDFYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ L S A+ +L++RGL+ E+I F +G+AP W N L + + ++ +TL
Sbjct: 124 SGFYQQALSQSIGTSALQYLQQRGLSAEVISHFAIGFAPPGWDNVLKRFGRNNDDRSTLN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V ++ + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------DQGRTYDRFRERVMFPIRDKRGRVIAFGGRVLGDGT-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 232 NSPETEIFHKGRQLYGLYEAQQNHPELKRLLVVEGYMDVVALAQFGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+ ++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 DHIQLLFRATDLVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEI 266
K G +F +++ A+ L QF E +
Sbjct: 352 KEGKAVFEQRMEHALPLSQFLFETL 376
>gi|378980764|ref|YP_005228905.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae HS11286]
gi|419972132|ref|ZP_14487561.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|419978127|ref|ZP_14493424.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|419984867|ref|ZP_14500011.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|419989083|ref|ZP_14504060.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|419995211|ref|ZP_14510018.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|420001429|ref|ZP_14516085.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|420007036|ref|ZP_14521531.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|420012915|ref|ZP_14527227.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|420018638|ref|ZP_14532834.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH10]
gi|420026609|ref|ZP_14540610.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH11]
gi|420029566|ref|ZP_14543395.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH12]
gi|420038419|ref|ZP_14552066.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH14]
gi|420041389|ref|ZP_14554886.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH16]
gi|420047356|ref|ZP_14560673.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH17]
gi|420052859|ref|ZP_14566039.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH18]
gi|420061426|ref|ZP_14574415.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH19]
gi|420064812|ref|ZP_14577620.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH20]
gi|420074141|ref|ZP_14586756.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH21]
gi|420077432|ref|ZP_14589897.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH22]
gi|420082265|ref|ZP_14594564.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH23]
gi|421910905|ref|ZP_16340676.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421916328|ref|ZP_16345908.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae ST258-K28BO]
gi|424931708|ref|ZP_18350080.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|428148018|ref|ZP_18995916.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae ST512-K30BO]
gi|428938667|ref|ZP_19011791.1| DNA primase [Klebsiella pneumoniae VA360]
gi|364520175|gb|AEW63303.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae HS11286]
gi|397351960|gb|EJJ45041.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|397352410|gb|EJJ45489.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|397353185|gb|EJJ46260.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|397367964|gb|EJJ60572.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|397369915|gb|EJJ62507.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|397372320|gb|EJJ64816.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|397380826|gb|EJJ73004.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|397385148|gb|EJJ77252.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|397389881|gb|EJJ81803.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH10]
gi|397394979|gb|EJJ86694.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH11]
gi|397402777|gb|EJJ94372.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH12]
gi|397404336|gb|EJJ95850.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH14]
gi|397417142|gb|EJK08311.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH17]
gi|397418996|gb|EJK10150.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH16]
gi|397424991|gb|EJK15879.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH18]
gi|397430930|gb|EJK21614.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH19]
gi|397432650|gb|EJK23307.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH20]
gi|397436454|gb|EJK27041.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH21]
gi|397445943|gb|EJK36172.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH22]
gi|397452320|gb|EJK42391.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KPNIH23]
gi|407805895|gb|EKF77146.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|410115280|emb|CCM83301.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410121394|emb|CCM88533.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae ST258-K28BO]
gi|426305369|gb|EKV67493.1| DNA primase [Klebsiella pneumoniae VA360]
gi|427542076|emb|CCM92054.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae ST512-K30BO]
Length = 581
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 165/271 (60%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + A +L KRGL+ E+I RF +GYAP W N L + + N +L +
Sbjct: 126 FYQQSLMQPAADPARQYLAKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNPEPPRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLLPQVDLST 384
>gi|206576100|ref|YP_002236519.1| DNA primase [Klebsiella pneumoniae 342]
gi|288933504|ref|YP_003437563.1| DNA primase [Klebsiella variicola At-22]
gi|290511437|ref|ZP_06550806.1| DNA primase [Klebsiella sp. 1_1_55]
gi|206565158|gb|ACI06934.1| DNA primase [Klebsiella pneumoniae 342]
gi|288888233|gb|ADC56551.1| DNA primase [Klebsiella variicola At-22]
gi|289776430|gb|EFD84429.1| DNA primase [Klebsiella sp. 1_1_55]
Length = 581
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 165/271 (60%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + A +L KRGL+ E+I RF +GYAP W N L + + N +L +
Sbjct: 126 FYQQSLMQPAADPARQYLAKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNPEPPRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLLPQVDLST 384
>gi|157372532|ref|YP_001480521.1| DNA primase [Serratia proteamaculans 568]
gi|157324296|gb|ABV43393.1| DNA primase [Serratia proteamaculans 568]
Length = 582
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 214/386 (55%), Gaps = 22/386 (5%)
Query: 5 SDFYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ L + A N+L++RGL++++I F +G+AP W NAL + D ++ + L
Sbjct: 124 SSFYQQSLHQPSGAPARNYLQQRGLSDDVIRHFAIGFAPAGWDNALKRFGRDADSRSALN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V ++ + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIAFGGRVLGDGM-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+Q+G VA LGT+ T+
Sbjct: 232 NSPETEVFHKGRQLYGLYEAQQNHPTPQRLLVVEGYMDVVALAQYGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T++++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 EHIQLLFRATDNVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G + F +++ A L F E ++ +L + K L +P +LR
Sbjct: 352 KEGKEAFEQRMELAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLITQVP-GETLRLY 410
Query: 302 IISSL-SKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
+ L SK+ + ++++ L + T + ++ + ++ LL+ P L
Sbjct: 411 LRQQLGSKLGLLDDSQLDKLMPKQAENA--NTYQAPQLKRTTMRI-LIGLLVQNPQLATL 467
Query: 361 INSEDMIIFSKCSQNYVKMFFQLIDT 386
I S + + +K Q + +F +L+ T
Sbjct: 468 IPSLEGLEQTK--QAGLPLFVELVQT 491
>gi|91794184|ref|YP_563835.1| DNA primase [Shewanella denitrificans OS217]
gi|91716186|gb|ABE56112.1| DNA primase [Shewanella denitrificans OS217]
Length = 574
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 128/357 (35%), Positives = 207/357 (57%), Gaps = 25/357 (7%)
Query: 7 FYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDY-NNINTLAS 62
FY+ QL+ + ++ I++L RGL+E++I F +G+AP+ W+ L + + + + L +
Sbjct: 123 FYQSQLRQHADKQKVIDYLAMRGLSEDVIEHFGIGFAPDGWDGLLSRYRQHPQSQDKLLT 182
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+++ N S KRYDRFR R+MFPI++ G+++GFGGR++ + KY+N
Sbjct: 183 AGMLI------ANDS-----GKRYDRFRDRLMFPIRDRRGRVVGFGGRVLGEGT-PKYLN 230
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETP+FHK NELYGL+E K VLI EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 231 SPETPIFHKGNELYGLYELKQRHRDPEQVLIVEGYMDVVALAQFGVDYAVASLGTSTTAE 290
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
+ ++ +I +DGD+AGR AA RALE L ++F+F+P DPDS +RK
Sbjct: 291 QFQLLVRSAKEVICCYDGDRAGREAAWRALETALPLLKPGDKVRFMFVPQGEDPDSMVRK 350
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G F + + +A+SL +F + + NY T K + +K I + K+ S L+ +
Sbjct: 351 VGKDAFEQAMKQALSLPEFLFDTLASNYG--TDKG-DLAKQAIGLIEKV--QDSVLQNLL 405
Query: 303 ISSLSKIIKVSFNEINNLFKINTSSIKH-KTIEKKNIQPICIEYQI-MKLLISYPSL 357
+ +L+ K+ N ++L K ++K +T+ K +Q ++ + LL+ +P L
Sbjct: 406 LENLAH--KLGMNSADDLKKKFGFTVKQSQTVNSKGLQGRGTPLRLAIALLVQHPDL 460
>gi|300112779|ref|YP_003759354.1| DNA primase [Nitrosococcus watsonii C-113]
gi|299538716|gb|ADJ27033.1| DNA primase [Nitrosococcus watsonii C-113]
Length = 575
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 168/281 (59%), Gaps = 22/281 (7%)
Query: 1 MICASDFYKIQLKNSK---EAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ CA++FY+ QL+ + + +L++RGL+ +I F LG+AP WNAL L Y
Sbjct: 119 LACAAEFYQQQLEANAYQGQVKAYLRERGLSGSVIAEFGLGFAPPRWNAL----LHYTQP 174
Query: 58 N---TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKD 114
+ L ++GL + K N+ YDRFR R++FPI + G++IGFGGRL+ +
Sbjct: 175 SLKSHLQAAGLAISKGENRY-----------YDRFRDRLIFPIHDYRGRVIGFGGRLLGN 223
Query: 115 SNEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAI 174
+ KY+NSPETPLFHK ELYGL++ + ++ + +L+ EGYMDV+ L++ VA
Sbjct: 224 GS-PKYLNSPETPLFHKGRELYGLYQVRKSLRRCDRLLVVEGYMDVLALAEHKIRYAVAT 282
Query: 175 LGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKY 234
LGTA TS H+ ++ T ++IF FDGD+AG +AA RALE L + ++F+FLP
Sbjct: 283 LGTATTSDHLTRLFRITPAVIFCFDGDRAGYQAAWRALETALPLLGQGRQVQFMFLPQGE 342
Query: 235 DPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTI 275
DPD+ +R G F ++ +AM L F L + +L ++
Sbjct: 343 DPDTVVRAEGQMAFEARITKAMPLSDFLLNNLRQKVDLSSV 383
>gi|212711168|ref|ZP_03319296.1| hypothetical protein PROVALCAL_02240 [Providencia alcalifaciens DSM
30120]
gi|422019958|ref|ZP_16366500.1| DNA primase [Providencia alcalifaciens Dmel2]
gi|212686336|gb|EEB45864.1| hypothetical protein PROVALCAL_02240 [Providencia alcalifaciens DSM
30120]
gi|414102582|gb|EKT64174.1| DNA primase [Providencia alcalifaciens Dmel2]
Length = 581
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 203/353 (57%), Gaps = 26/353 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
CA+ + ++ +A ++L +RGL+ +II F++G+AP W N L K ++ + L
Sbjct: 128 CAA----LNHPSANKAKDYLSQRGLSADIISHFSIGFAPPGWDNLLKKFAVNPESRQQLD 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V +V YDRFR RIMFPI++ G++I FGGR++ D+ KY+
Sbjct: 184 EAGMLVTNDNGRV-----------YDRFRERIMFPIRDRRGRVIAFGGRVLGDA-LPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +L+GL+EA + +L+ EGYMDV+ L+Q+ VA LGT+ TS
Sbjct: 232 NSPETDIFHKGRQLFGLYEATQNSSELAKLLVVEGYMDVVALAQYDIRYAVASLGTSTTS 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPDS +R
Sbjct: 292 EHIQLLYRSTDTVICCYDGDRAGRDAAWRALENALPYLTDGRQLRFMFLPDGEDPDSLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK-SKYNIEYLFKIIPLSSSLRF 300
K G F +++ A SL F + ++ +LKT + K SK I L K IP +LR
Sbjct: 352 KEGKDAFEQRMENAQSLSTFLFDSLVPQVDLKTQEGRAKISKLAIP-LIKQIP-GETLRL 409
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
+ L I V +I+ + + I ++ E N Q ++ M++LI+
Sbjct: 410 YMAQELGNFIGVP--DISQVLAM----IDRESTEPVNYQAPKLKPTTMRILIA 456
>gi|330505279|ref|YP_004382148.1| DNA primase [Pseudomonas mendocina NK-01]
gi|328919565|gb|AEB60396.1| DNA primase [Pseudomonas mendocina NK-01]
Length = 667
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/279 (39%), Positives = 166/279 (59%), Gaps = 16/279 (5%)
Query: 3 CASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
A++ Y+ LK+ + A+++LK RGL EI F +G+AP W N L ++ D
Sbjct: 122 AAAEHYRQALKSHPQRKYAVDYLKGRGLTGEIARDFGIGFAPPGWDNLLKQLGADALQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ N +RYDRFR RIMFPI+++ G++I FGGR++ D ++
Sbjct: 182 VMIDAGLLIENAENG----------RRYDRFRDRIMFPIRDSRGRVIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLYEARKHNRDLDEIMVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGD AGR AA RALE L D + +FLFLPD DPD+
Sbjct: 291 TSEEHLKRLFRIVPSVLFCFDGDAAGRNAAWRALESTLPSLQDGRRARFLFLPDGEDPDT 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIK 276
+R G F ++ A L +F +++ + ++++
Sbjct: 351 LVRAEGTDAFRARINQHAQPLADYFFQQLCEEADPRSLE 389
>gi|227329606|ref|ZP_03833630.1| DNA primase [Pectobacterium carotovorum subsp. carotovorum WPP14]
Length = 584
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 141/456 (30%), Positives = 239/456 (52%), Gaps = 39/456 (8%)
Query: 5 SDFYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ L S A+ +L++RGL+ E+I F +G+AP W N L + + ++ +TL
Sbjct: 124 SGFYQQALSQSVGTPALQYLQQRGLSAEVISHFAIGFAPPGWDNVLKRFGRNNDDRSTLN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V ++ + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------DQGRTYDRFRERVMFPIRDKRGRVIAFGGRVLGDGT-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 232 NSPETEIFHKGRQLYGLYEAQQNHAELKRLLVVEGYMDVVALAQFGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+ ++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 DHIQLLFRATDLVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G F +++ +A+ L QF E + ++ + K L +P +LR
Sbjct: 352 KEGKVAFEQRMEQALPLSQFLFETLQQQVDMSSPDGRTKLSTLALPLIGQVP-GETLRLY 410
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEK-KNIQPICIEYQIMK----LLISYPS 356
+ L N++ L + K E+ ++ QP ++ M+ LL+ P
Sbjct: 411 LRQQLG-------NKLGILDDSQLDRLLPKVAEQAQSYQPPQLKVTTMRILIGLLVQNPR 463
Query: 357 LINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKN--------DIDHSKFIKYLKKINK 408
L E+ + + + +F L+ T ++ SK+ K L+ +
Sbjct: 464 LAAEVPDLALEGIEEDKVAGLSLFQDLVKTCNVSPGMNMGLLLEKYRDSKYRKQLETM-A 522
Query: 409 NFESIIVKIQDNFEYSIEIAKKTLLDAIYKDRKSVV 444
++ +IV+ + + ++ I +A+ L D + K R+ +
Sbjct: 523 SWNHMIVEEELDEKFRISLAE--LYDQLLKQRQETL 556
>gi|254523315|ref|ZP_05135370.1| DNA primase [Stenotrophomonas sp. SKA14]
gi|219720906|gb|EED39431.1| DNA primase [Stenotrophomonas sp. SKA14]
Length = 579
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 194/362 (53%), Gaps = 28/362 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFL-DYNNINTLA 61
A+ F++ L+ S++A ++L RG++EE RF +GYAP+ ++ L D + L
Sbjct: 120 AATKFFQKNLEGSEKARSYLDGRGVDEENRARFQIGYAPDGYSGLRDALGKDERRMKLLD 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+GL +K ++ V YD+FR R+MFPI + G++I FGGR+ + + KY+
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRVFEKDDGPKYL 228
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LGTA T
Sbjct: 229 NSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLGTATTP 288
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + + F FDGD AGRRA +ALE L D + FLFLPD DPD+ +R
Sbjct: 289 DHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPDTIVR 348
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G F++++ +A L QFF +E+ NL T+ + + + IP
Sbjct: 349 KEGADAFNERLKQATPLSQFFFDELTREINLGTLDGKARLAERAKPMLAQIP-------- 400
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEK---KNIQPIC---IEYQIMKLLISYP 355
+ ++K ++ L N +S + ++ + IQP+ + + +L+ P
Sbjct: 401 -DGAFGDLMKQQLAQLTGLGG-NAASARAPMPQRQPARTIQPVAKRSLVRGAIAVLLQQP 458
Query: 356 SL 357
SL
Sbjct: 459 SL 460
>gi|440729702|ref|ZP_20909820.1| DNA primase [Xanthomonas translucens DAR61454]
gi|440380678|gb|ELQ17236.1| DNA primase [Xanthomonas translucens DAR61454]
Length = 579
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 208/406 (51%), Gaps = 30/406 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL+ S +A ++L RG++ + RF +GYAP+ ++AL + + D L
Sbjct: 122 AATKFFQRQLETSDKARSYLDGRGVDADNRTRFQIGYAPDGFSALKDALGTDERRHKLLE 181
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+GL E+ YD+FR R+MFPI + G++I FGGR++ + KY+
Sbjct: 182 RAGLFSKN-----------ERGHVYDKFRDRVMFPIFDRRGRVIAFGGRVMDKDDGPKYL 230
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LGTA TS
Sbjct: 231 NSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLGTATTS 290
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + + F FDGD AGRRA +ALE L D + FLFLPD DPDS +R
Sbjct: 291 EHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPDSIVR 350
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G F+ ++ +A L QFF +E+ NL T+ + + IP
Sbjct: 351 KEGADGFAARLQQATPLSQFFFDELSREVNLATLDGKARLAERARPMLAQIP-------- 402
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIK-----HKTIEKKNIQPICIEYQIMKLLISYPS 356
+ +++ EI + +S + + + + + + I++LL + PS
Sbjct: 403 -DGAFGDLMRQRLAEITGIGGAAPASAQLGKPPPRAVARPTQKRSLVREAIVRLLHT-PS 460
Query: 357 LINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKY 402
L ++ F+ +++ +L++ +H + DI +++
Sbjct: 461 LALDLPPP--YPFAGLRLPGIELMIELLEIVHT-RPDISTGALLEH 503
>gi|392556747|ref|ZP_10303884.1| DNA primase [Pseudoalteromonas undina NCIMB 2128]
Length = 583
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 210/370 (56%), Gaps = 31/370 (8%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M+ A+ FY+ QLK NS+ I+++K RGL+ + +F +GYAP+EW L +
Sbjct: 121 MLHAARFYQHQLKHHSNSETVIDYVKGRGLSGATVKKFMMGYAPSEWEGLCQQL----GR 176
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
N LV K+ ++ ++P K++D FR R+MFPI++ G++I FGGR+++
Sbjct: 177 NQEQKEQLVELKLASE--KTPG----KQFDFFRDRLMFPIRDKRGRVIAFGGRVMQADQG 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+EAK A ++ +VLI EGYMDV+ L++ G VA LGT
Sbjct: 231 PKYLNSPETRIFHKGFELYGLYEAKQAHKRLDHVLIVEGYMDVVALAEQGIEYAVAALGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A TS H+ + T+ +I +DGD+AG+ AA RALE L Y D K + F+FLPD DPD
Sbjct: 291 ATTSEHMHTLFRTTDKVICCYDGDRAGKDAAWRALENALPYLNDGKALHFVFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL--- 294
S +++ G + F +++ A + ++ N K I D+ + L +PL
Sbjct: 351 SLVQQEGKEAFEQRLENADDFTK-----VLFNKLSKEI-DLTLDSGKAKLLSAALPLIEK 404
Query: 295 --SSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKK-NIQPICIEYQIMKLL 351
S + I+ L ++I + ++NN K + + + IE+K I P+ Q + +L
Sbjct: 405 IPSEFYQENILEQLGRLIGRTREQLNNHLK---TPKQQQAIERKFKITPM---RQAIGIL 458
Query: 352 ISYPSLINEI 361
+ +P+L +
Sbjct: 459 VQHPNLAKSV 468
>gi|284008588|emb|CBA75167.1| DNA primase [Arsenophonus nasoniae]
Length = 597
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 150/451 (33%), Positives = 247/451 (54%), Gaps = 58/451 (12%)
Query: 7 FYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN-TLASS 63
FY+ L +S++A +L +RGL++E+I RF++G+AP W+ L K F + + L ++
Sbjct: 143 FYQRSLNKLDSQKAKQYLIQRGLSDEVIHRFSIGFAPTGWDNLLKHFAKHAESHKQLDAA 202
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V + YDRFR RIMFPI++ G+++ FGGR++ D+ KY+NS
Sbjct: 203 GMLVTN-----------NNGRTYDRFRERIMFPIRDRRGRVVAFGGRVLDDT-LPKYLNS 250
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA +L+ EGYMDV+ L+QFG VA LGT+ T+ H
Sbjct: 251 PETEIFHKGRQLYGLYEATQNNPALSKLLVVEGYMDVVALAQFGINYAVASLGTSTTAEH 310
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+++I +DGD+AGR AA R LE L Y +D + ++F+FLPD DPDS IRK
Sbjct: 311 IQLLFRTTDTVICCYDGDKAGREAAWRTLETALPYLSDGRQLQFMFLPDGEDPDSLIRKE 370
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYN--IEYLFKIIPLSSSLRFK 301
G F +++ ++ SL F + ++ +L + + K+K+N L K +P +L+
Sbjct: 371 GKANFEQRMDKSHSLSTFLFDTLVAQVDLASHEG--KAKFNRLAIPLIKKVP-GDTLQLY 427
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISY----PSL 357
+ L SF I + +I + I+ EK N Q I+ M++LI+ P+
Sbjct: 428 LAQELG-----SFIGIPDTSRI-LAMIEKGLAEKTNYQAPKIKTTTMRILIALLVQNPNF 481
Query: 358 INEINSEDMIIFSKCSQNYVKMFFQLID------------TIHIFKNDIDHSKFIKYLKK 405
++ I + D I S+ + +F +L++ + ++N+ KF+K L+K
Sbjct: 482 VSLIPTLDGIKHSQLPG--LMLFLELVELCQSHPGITTGQLLECYRNN----KFVKQLEK 535
Query: 406 INKNFESIIVKIQDNFEYSIEIAKKTLLDAI 436
+ + I ++ EIA+K DA+
Sbjct: 536 L-ATWNDIEIE---------EIAEKMFKDAL 556
>gi|146313108|ref|YP_001178182.1| DNA primase [Enterobacter sp. 638]
gi|145319984|gb|ABP62131.1| DNA primase [Enterobacter sp. 638]
Length = 581
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 168/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ LK S + A +L +RGL++++I RF +GYAP W N L + + + +L +
Sbjct: 126 FYQQSLKQSAAEPARQYLNQRGLSDDVIARFAIGYAPPGWDNVLKRFGGNSEDRKSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QF VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPRRLLVVEGYMDVVALAQFDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGREAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ A L F ++ +L T
Sbjct: 354 GKEAFEARMEVAQPLSTFLFNSLMPQVDLST 384
>gi|421350353|ref|ZP_15800719.1| DNA primase [Vibrio cholerae HE-25]
gi|395954475|gb|EJH65085.1| DNA primase [Vibrio cholerae HE-25]
Length = 591
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 135/372 (36%), Positives = 214/372 (57%), Gaps = 41/372 (11%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 127 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 187 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AARRA+E L + +KI+K LFLPD DPD
Sbjct: 295 STTGDHLQLLFRQTNHVICCYDGDRAGREAARRAMENALEFLNANKILKVLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL--- 294
S++RK+G F +++ + SL+ F L EI K D + ++ PL
Sbjct: 355 SFVRKYGKTKFEEEIENSQSLIDFLLTEIK-----KEAPDTDSKRWGTYVATNAAPLLNK 409
Query: 295 --SSSLRFKIISSLSKIIKVSFNE------INNLFKINTSS--IKHKTIEKKNIQPICIE 344
SL+ + L+ + +++ +N+L N++S H+ I++ ++
Sbjct: 410 TTDPSLKAYLWKELT--LGTGWSDFQLQKFLNSLLTTNSNSQPAPHRAIKRTPMR----- 462
Query: 345 YQIMKLLISYPS 356
++ LLI PS
Sbjct: 463 -DVIALLIQNPS 473
>gi|433679594|ref|ZP_20511308.1| DNA primase [Xanthomonas translucens pv. translucens DSM 18974]
gi|430815289|emb|CCP41903.1| DNA primase [Xanthomonas translucens pv. translucens DSM 18974]
Length = 579
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 208/406 (51%), Gaps = 30/406 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL+ S +A ++L RG++ + RF +GYAP+ ++AL + + D L
Sbjct: 122 AATKFFQRQLETSDKARSYLDGRGVDADNRTRFQIGYAPDGFSALKDALGTDERRHKLLE 181
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+GL E+ YD+FR R+MFPI + G++I FGGR++ + KY+
Sbjct: 182 RAGLFSKN-----------ERGHVYDKFRDRVMFPIFDRRGRVIAFGGRVMDKDDGPKYL 230
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LGTA TS
Sbjct: 231 NSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLGTATTS 290
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + + F FDGD AGRRA +ALE L D + FLFLPD DPDS +R
Sbjct: 291 EHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPDSIVR 350
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G F+ ++ +A L QFF +E+ NL T+ + + IP
Sbjct: 351 KEGADGFAARLQQATPLSQFFFDELSREVNLATLDGKARLAERARPMLAQIP-------- 402
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIK-----HKTIEKKNIQPICIEYQIMKLLISYPS 356
+ +++ EI + +S + + + + + + I++LL + PS
Sbjct: 403 -DGAFGDLMRQRMAEITGIGGAAPASAQLAKPPPRAVARPTQKRSLVREAIVRLLHT-PS 460
Query: 357 LINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKY 402
L ++ F+ +++ +L++ +H + DI +++
Sbjct: 461 LALDLPPP--YPFAGLRLPGIELMIELLEIVHT-RPDISTGALLEH 503
>gi|212555456|gb|ACJ27910.1| DNA primase [Shewanella piezotolerans WP3]
Length = 576
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 207/369 (56%), Gaps = 35/369 (9%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNN 56
M +S F++ QL+ + ++ +++L RGL+++++ FN+G+AP+ W+ L ++ + ++
Sbjct: 117 MEESSLFFQSQLRQHPDKQKVLDYLSHRGLSKDVVEHFNIGFAPDGWDGLLSRYRQNQDS 176
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
N L ++G+V++ + KRYDRFR R+MFPI++ G++IGFGGR++ +
Sbjct: 177 QNKLLTAGMVIEN-----------DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGEGT 225
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPETP+FHK NELYGL+E K VLI EGYMDV+ L QFG VA LG
Sbjct: 226 -PKYLNSPETPIFHKGNELYGLYELKQRHRDPQQVLIVEGYMDVVALGQFGVDYAVASLG 284
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
T+ T+ + +L +I +DGD+AG+ AA RALE L ++F+FLP+ DP
Sbjct: 285 TSTTADQFQLLLRSAKEVICCYDGDKAGKEAAWRALETALPLLKPGNQVRFMFLPEGEDP 344
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLK--------TIKDIEKSKYNIEYL 288
D+ +R+ G + F + + +AM+L +F E + + + IK IEK + +
Sbjct: 345 DTLVRQIGKEQFEQNIGQAMALPEFLFENLAKKFGKEDKSVLAKNAIKLIEKVQDTVLQS 404
Query: 289 FKIIPLSSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIM 348
+ L+ LR L + K +F+ K +HK ++ + P+ + +
Sbjct: 405 LLLEDLAHKLRMNGADELKR--KFNFST-----KTADKPKQHKALKGRGT-PLRL---AI 453
Query: 349 KLLISYPSL 357
LL+ +P L
Sbjct: 454 ALLVQHPRL 462
>gi|261342494|ref|ZP_05970352.1| DNA primase [Enterobacter cancerogenus ATCC 35316]
gi|288315135|gb|EFC54073.1| DNA primase [Enterobacter cancerogenus ATCC 35316]
Length = 581
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 168/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ LK+S + A +L RGL++++I RF +GYAP W N L + + + +L +
Sbjct: 126 FYQQSLKHSAAEPARQYLNARGLSDDVIARFAIGYAPPGWDNVLKRFGGNSEDRKSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQENAEPPRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLMPQVDLST 384
>gi|119473195|ref|ZP_01614892.1| DNA primase [Alteromonadales bacterium TW-7]
gi|119444559|gb|EAW25874.1| DNA primase [Alteromonadales bacterium TW-7]
Length = 583
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/369 (36%), Positives = 207/369 (56%), Gaps = 29/369 (7%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M+ + FY+ QLK NS I+++K RGL+ E + +F +GYAP+EW+ L
Sbjct: 121 MLHTARFYQHQLKHHANSAAVIDYVKGRGLSGETVKKFMIGYAPSEWDGLCLQL----GR 176
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
N LV K+ ++ ++P +++D FR R+MFPI++ G+++ FGGR+++
Sbjct: 177 NKEQKEQLVELKLASE--KTPG----RQFDFFRDRLMFPIRDKRGRVVAFGGRVMQADQG 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+EAK A +K ++LI EGYMDV+ L++ VA LGT
Sbjct: 231 PKYLNSPETRIFHKGFELYGLYEAKQAHKKLEHILIVEGYMDVVALAEKEIEYAVAALGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A TS H+ + T+ +I +DGD+AGR AA RALE L Y D K + F+FLPD DPD
Sbjct: 291 ATTSEHMHTLFRTTDKVICCYDGDRAGRDAAWRALENALPYLNDGKALNFVFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL--- 294
S ++K G + F +++ EA + ++ +L D K+K L +PL
Sbjct: 351 SLVQKEGKEAFEQRLSEADDFTKVMFNKLSQEIDLTL--DSGKAK----LLSAALPLIEK 404
Query: 295 --SSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
S + I+ L ++I + ++NN ++ T +H K I P+ Q + +LI
Sbjct: 405 IPSEFYQENILEQLGRLIGRTREQLNN--RLKTPKQQHSIERKFKITPM---RQAIGILI 459
Query: 353 SYPSLINEI 361
+P+L +
Sbjct: 460 QHPNLAKSV 468
>gi|386716816|ref|YP_006183142.1| DNA primase [Stenotrophomonas maltophilia D457]
gi|384076378|emb|CCH10959.1| DNA primase [Stenotrophomonas maltophilia D457]
Length = 579
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 193/361 (53%), Gaps = 26/361 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFL-DYNNINTLA 61
A+ F++ L+ S++A ++L RG++EE RF +GYAP+ ++ L D + L
Sbjct: 120 AATKFFQKNLEGSEKARSYLDGRGVDEENRARFQIGYAPDGYSGLRDALGKDERRMKLLD 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+GL +K ++ V YD+FR R+MFPI + G++I FGGR+ + + KY+
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRVFEKDDGPKYL 228
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LGTA T
Sbjct: 229 NSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLGTATTP 288
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + + F FDGD AGRRA +ALE L D + FLFLPD DPD+ +R
Sbjct: 289 DHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPDTIVR 348
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G + F++++ +A L QFF +E+ NL T+ + + + IP
Sbjct: 349 KEGAEAFNERLKQATPLSQFFFDELTREINLGTLDGKARLAERAKPMLAQIP-------- 400
Query: 302 IISSLSKIIKVSFNEINNLFKI--NTSSIKHKTIEKKNIQPIC---IEYQIMKLLISYPS 356
+ ++K ++ L T + + ++ IQP+ + + +L+ PS
Sbjct: 401 -DGAFGDLMKQQLAQLTGLGGTAQATRAPMPQRQPQRTIQPVAKRSLVRGAIAVLLQQPS 459
Query: 357 L 357
L
Sbjct: 460 L 460
>gi|359449144|ref|ZP_09238643.1| DNA primase [Pseudoalteromonas sp. BSi20480]
gi|358045055|dbj|GAA74892.1| DNA primase [Pseudoalteromonas sp. BSi20480]
Length = 583
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/369 (36%), Positives = 207/369 (56%), Gaps = 29/369 (7%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M+ + FY+ QLK NS I+++K RGL+ E + +F +GYAP+EW+ L
Sbjct: 121 MLHTARFYQHQLKHHANSAAVIDYVKGRGLSGETVKKFMVGYAPSEWDGLCLQL----GR 176
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
N LV K+ ++ ++P +++D FR R+MFPI++ G+++ FGGR+++
Sbjct: 177 NKEQKEQLVELKLASE--KTPG----RQFDFFRDRLMFPIRDKRGRVVAFGGRVMQADQG 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+EAK A +K ++LI EGYMDV+ L++ VA LGT
Sbjct: 231 PKYLNSPETRIFHKGFELYGLYEAKQAHKKLEHILIVEGYMDVVALAEKEIEYAVAALGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A TS H+ + T+ +I +DGD+AGR AA RALE L Y D K + F+FLPD DPD
Sbjct: 291 ATTSEHMHTLFRTTDKVICCYDGDRAGRDAAWRALENALPYLNDGKALNFVFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL--- 294
S ++K G + F +++ EA + ++ +L D K+K L +PL
Sbjct: 351 SLVQKEGKEAFEQRLSEADDFTKVMFNKLSQEIDLTL--DSGKAK----LLSAALPLIEK 404
Query: 295 --SSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
S + I+ L ++I + ++NN ++ T +H K I P+ Q + +LI
Sbjct: 405 IPSEFYQENILEQLGRLIGRTREQLNN--RLKTPKQQHSIERKFKITPM---RQAIGILI 459
Query: 353 SYPSLINEI 361
+P+L +
Sbjct: 460 QHPNLAKSV 468
>gi|418019754|ref|ZP_12659177.1| DNA primase, catalytic core [Candidatus Regiella insecticola R5.15]
gi|347604884|gb|EGY29427.1| DNA primase, catalytic core [Candidatus Regiella insecticola R5.15]
Length = 588
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 139/438 (31%), Positives = 232/438 (52%), Gaps = 26/438 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI-NTLA 61
+FY+ L + + +A +L++RGLN+ II F +G+AP W+ L K F + N TL
Sbjct: 124 GEFYQQSLNSPPAHQAYRYLEQRGLNKAIIHHFAIGFAPPGWDNLLKRFGNSNETRTTLN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V + YDRFR RIMFPI++ G+II FGGR + DS KY+
Sbjct: 184 HAGMLVTNNTKRC-----------YDRFRERIMFPIRDKRGRIIAFGGRTVDDS-VPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +F KS +LYG +E + +L+ EGYMDV+ L+QFG V LGTA T+
Sbjct: 232 NSPETEIFRKSRQLYGWYEVQVKQPNPSRLLLVEGYMDVVALAQFGIDYAVGSLGTATTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H++ + T+ ++ +DGD+AGR AA R L L Y D + ++F+FLP+ DPD+ IR
Sbjct: 292 EHLQLLFRTTDHVVCCYDGDKAGRSAAWRTLITALPYLNDGRQLRFMFLPEGEDPDTLIR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
+ G F + + +A L +F E ++L +L + K L +P +LR
Sbjct: 352 REGKTAFEQLIDQAQPLSKFLFETLMLQVDLSSPDGRAKLSTLALPLINQVP-GETLRLY 410
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEI 361
+ L + + + + + I + T + I+P + ++ LL+ +P L +
Sbjct: 411 LRQELGHKLGIPDDSLLDKL-IPRQVVASNTYRRPQIKPTTMRI-LIALLVQHPHLAASV 468
Query: 362 NSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNFESIIVKIQD 419
S I +K + + +F +L++T + + D++ + ++ + K +K E + I +
Sbjct: 469 PSLQGIKQAKLAG--LPLFIELVETC-LAQPDLNTGQLLEQYRDNKYSKQLEKL--AIWN 523
Query: 420 NFEYSIEIAKKTLLDAIY 437
+ E EI + T LDA++
Sbjct: 524 DIEIK-EIVETTFLDALH 540
>gi|392538021|ref|ZP_10285158.1| DNA primase [Pseudoalteromonas marina mano4]
Length = 583
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/369 (36%), Positives = 207/369 (56%), Gaps = 29/369 (7%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M+ + FY+ QLK NS I+++K RGL+ E + +F +GYAP+EW+ L
Sbjct: 121 MLHTARFYQHQLKHHANSAAVIDYVKGRGLSGETVKKFMVGYAPSEWDGLCLQL----GR 176
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
N LV K+ ++ ++P +++D FR R+MFPI++ G+++ FGGR+++
Sbjct: 177 NKEQKEQLVELKLASE--KTPG----RQFDFFRDRLMFPIRDKRGRVVAFGGRVMQADQG 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+EAK A +K ++LI EGYMDV+ L++ VA LGT
Sbjct: 231 PKYLNSPETRIFHKGFELYGLYEAKQAHKKLEHILIVEGYMDVVALAEKEIEYAVAALGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A TS H+ + T+ +I +DGD+AGR AA RALE L Y D K + F+FLPD DPD
Sbjct: 291 ATTSEHMHTLFRTTDKVICCYDGDRAGRDAAWRALENALPYLNDGKALNFVFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL--- 294
S ++K G + F +++ EA + ++ +L D K+K L +PL
Sbjct: 351 SLVQKEGKEAFEQRLSEADDFTKVMFNKLSQEIDLTL--DSGKAK----LLSAALPLIEK 404
Query: 295 --SSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
S + I+ L ++I + ++NN ++ T +H K I P+ Q + +LI
Sbjct: 405 IPSEFYQENILEQLGRLIGRTREQLNN--RLKTPKQQHSIERKFKITPM---RQAIGILI 459
Query: 353 SYPSLINEI 361
+P+L +
Sbjct: 460 QHPNLAKSV 468
>gi|392533501|ref|ZP_10280638.1| DNA primase [Pseudoalteromonas arctica A 37-1-2]
Length = 583
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/369 (36%), Positives = 206/369 (55%), Gaps = 29/369 (7%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M+ + FY+ QLK NS I ++K RGL+ E + +F +GYAP+EW+ L
Sbjct: 121 MLHTARFYQHQLKHHSNSAAVIEYVKGRGLSGETVKKFMIGYAPSEWDGLCLQL----GR 176
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
N LV K+ ++ ++P +++D FR R+MFPI++ G++I FGGR+++
Sbjct: 177 NKEQKEQLVELKLASE--KTPG----RQFDFFRDRLMFPIRDKRGRVIAFGGRVMQADQG 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+EAK A +K +V++ EGYMDV+ L++ G VA LGT
Sbjct: 231 PKYLNSPETRIFHKGFELYGLYEAKQAHKKLEHVMVVEGYMDVVALAEQGIEYAVASLGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A TS H+ + T+ +I +DGD+AGR AA RALE L Y D K ++F FLPD DPD
Sbjct: 291 ATTSEHMHTLFRTTDKVICCYDGDRAGRDAAWRALENALPYLNDGKALQFTFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL--- 294
S ++K G + F ++ +A + ++ +L D K+K L +PL
Sbjct: 351 SLVQKEGKEQFESRLSQADDFTKVLFNKLSQEVDLTL--DSGKAK----LLSAALPLIEK 404
Query: 295 --SSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
S + I+ L ++I + ++NN ++ T +H K I P+ Q + +LI
Sbjct: 405 IPSEFYQENILEQLGRLIGRTREQLNN--RLKTPKQQHSIERKFKITPM---RQAIGILI 459
Query: 353 SYPSLINEI 361
+P+L +
Sbjct: 460 QHPNLAKNV 468
>gi|52842570|ref|YP_096369.1| DNA primase DnaG [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378778258|ref|YP_005186697.1| DNA primase DnaG [Legionella pneumophila subsp. pneumophila ATCC
43290]
gi|52629681|gb|AAU28422.1| DNA primase DnaG [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|364509074|gb|AEW52598.1| DNA primase DnaG [Legionella pneumophila subsp. pneumophila ATCC
43290]
Length = 581
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 190/329 (57%), Gaps = 17/329 (5%)
Query: 1 MICASDFYKIQLK-NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINT 59
M S +Y+ +LK N + AI++L+ RGL+ EI R++LGYAP W+ L K F NN
Sbjct: 120 MSEVSQYYQKKLKYNGQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNLEKAFP--NNQRE 177
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L S+G+++ K+ YDR+R RIMFPI + +G++IGFGGR++ + K
Sbjct: 178 LLSTGMLIKSDEGKI-----------YDRYRNRIMFPIHDRNGRVIGFGGRVLDKDQKPK 226
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPET LF KS ELYGL + + + +++ EGYMDVI L+Q G VA LGTA
Sbjct: 227 YLNSPETVLFQKSRELYGLHQVLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 286
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
++ HI+ + +T +IF FDGD AG++AA RALE L + F+FLP+++DPDS
Sbjct: 287 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 346
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIE-YLFKIIPLSSSL 298
+R G F + + +A L +FF + + + NL + ++ YL K++ S
Sbjct: 347 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMV--EGSY 404
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSS 327
+ +I LS++ + + + NL + S
Sbjct: 405 KQLLIDDLSRLTHIESHRLTNLITDKSES 433
>gi|456737675|gb|EMF62352.1| DNA primase [Stenotrophomonas maltophilia EPM1]
Length = 579
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 192/361 (53%), Gaps = 26/361 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFL-DYNNINTLA 61
A+ F++ L+ S +A ++L RG++EE RF +GYAP+ ++ L D + L
Sbjct: 120 AAARFFQKNLEGSDKARSYLDGRGVDEENRARFQIGYAPDGYSGLRDALGKDERRMKLLD 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+GL +K ++ V YD+FR R+MFPI + G++I FGGR+ + + KY+
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRVFEKDDGPKYL 228
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LGTA T
Sbjct: 229 NSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLGTATTP 288
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + + F FDGD AGRRA +ALE L D + FLFLPD DPD+ +R
Sbjct: 289 DHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPDTIVR 348
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G + F++++ +A L QFF +E+ NL T+ + + + IP
Sbjct: 349 KEGAEAFNERLKQATPLSQFFFDELTREINLGTLDGKARLAERAKPMLAQIP-------- 400
Query: 302 IISSLSKIIKVSFNEINNLFKI--NTSSIKHKTIEKKNIQPIC---IEYQIMKLLISYPS 356
+ ++K ++ L T + + ++ IQP+ + + +L+ PS
Sbjct: 401 -DGAFGDLMKQQLAQLTGLGGTAQATRAPMPQRQPQRTIQPVAKRSLVRGAIAVLLQQPS 459
Query: 357 L 357
L
Sbjct: 460 L 460
>gi|190572509|ref|YP_001970354.1| DNA primase [Stenotrophomonas maltophilia K279a]
gi|190010431|emb|CAQ44039.1| putative DNA primase [Stenotrophomonas maltophilia K279a]
Length = 579
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 193/361 (53%), Gaps = 26/361 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFL-DYNNINTLA 61
A+ F++ L++S +A ++L RG++EE RF +GYAP+ ++ L D + L
Sbjct: 120 AAARFFQKNLESSDKARSYLDGRGVDEENRARFQIGYAPDGYSGLRDALGKDERRMKLLD 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+GL +K ++ V YD+FR R+MFPI + G++I FGGR+ + + KY+
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRVFEKDDGPKYL 228
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LGTA T
Sbjct: 229 NSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLGTATTP 288
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + + F FDGD AGRRA +ALE L D + FLFLPD DPD+ +R
Sbjct: 289 DHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPDTIVR 348
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G + F++++ +A L QFF +E+ NL T+ + + + IP
Sbjct: 349 KEGAEAFNERLKQATPLSQFFFDELTREINLGTLDGKARLAERAKPMLAQIP-------- 400
Query: 302 IISSLSKIIKVSFNEINNLFKI--NTSSIKHKTIEKKNIQPIC---IEYQIMKLLISYPS 356
+ ++K ++ L T + + ++ IQP+ + + +L+ PS
Sbjct: 401 -DGAFGDLMKQQLAQLTGLGGTAQATRAPMPQRQPQRTIQPVAKRSLVRGAIAVLLQQPS 459
Query: 357 L 357
L
Sbjct: 460 L 460
>gi|315127801|ref|YP_004069804.1| DNA primase [Pseudoalteromonas sp. SM9913]
gi|315016315|gb|ADT69653.1| DNA primase [Pseudoalteromonas sp. SM9913]
Length = 583
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 135/370 (36%), Positives = 209/370 (56%), Gaps = 31/370 (8%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M+ A+ FY+ QLK NS+ I+++K RGL+ + +F +GYAP+EW L +
Sbjct: 121 MLHAARFYQHQLKHHSNSEAVIDYVKGRGLSGATVKKFMIGYAPSEWEGLCQQL----GR 176
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
N LV K+ ++ ++P K++D FR R+MFPI++ G++I FGGR+++
Sbjct: 177 NQEQKEQLVELKLASE--KTPG----KQFDFFRDRLMFPIRDKRGRVIAFGGRVMQADQG 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+EAK A +K +VLI EGYMDV+ L++ G VA LGT
Sbjct: 231 PKYLNSPETRIFHKGFELYGLYEAKQAHKKLDHVLIVEGYMDVVALAEQGIEYAVAALGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A TS H+ + T+ +I +DGD+AG+ AA RALE L Y D K + F+FLPD DPD
Sbjct: 291 ATTSEHMHTLFRTTDKVICCYDGDRAGKDAAWRALENALPYLNDGKALHFVFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL--- 294
S +++ G F +++ A + ++ N K I D+ + L +PL
Sbjct: 351 SLVQQEGKVAFEQRLENADDFTK-----VLFNKLSKEI-DLTLDSGKAKLLSAALPLIEK 404
Query: 295 --SSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKK-NIQPICIEYQIMKLL 351
S + I+ L ++I + ++NN K + + + IE+K I P+ Q + +L
Sbjct: 405 IPSEFYQENILEQLGRLIGRTREQLNNHLK---TPKQQQAIERKFKITPM---RQAIGIL 458
Query: 352 ISYPSLINEI 361
I +P+L +
Sbjct: 459 IQHPNLAKSV 468
>gi|408823824|ref|ZP_11208714.1| DNA primase [Pseudomonas geniculata N1]
Length = 580
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/362 (34%), Positives = 194/362 (53%), Gaps = 27/362 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFL-DYNNINTLA 61
A+ F++ L+ S++A ++L RG++EE RF +GYAP+ ++ L D + L
Sbjct: 120 AATKFFQSNLQGSEKARSYLDGRGVDEENRARFQIGYAPDGYSGLRDALGKDERRMKLLD 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+GL +K ++ V YD+FR R+MFPI + G++I FGGR+ + + KY+
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRVFEKDDGPKYL 228
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LGTA T
Sbjct: 229 NSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLGTATTP 288
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + + F FDGD AGRRA +ALE L D + FLFLPD DPD+ +R
Sbjct: 289 DHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPDTIVR 348
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G + F++++ +A L QFF +E+ NL T+ + + IP
Sbjct: 349 KEGAEAFNERLKQATPLSQFFFDELTREINLGTLDGKARLAERARPMLAQIP-------- 400
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEK---KNIQPIC---IEYQIMKLLISYP 355
+ ++K ++ L N ++ + ++ + IQP+ + + +L+ P
Sbjct: 401 -DGAFGDLMKQQLGQLTGLGGGNAAATRAPMPQRQPSRTIQPVAKRSLVRGAIAVLLQQP 459
Query: 356 SL 357
SL
Sbjct: 460 SL 461
>gi|397664800|ref|YP_006506338.1| DNA primase [Legionella pneumophila subsp. pneumophila]
gi|395128211|emb|CCD06416.1| DNA primase [Legionella pneumophila subsp. pneumophila]
Length = 577
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 190/329 (57%), Gaps = 17/329 (5%)
Query: 1 MICASDFYKIQLK-NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINT 59
M S +Y+ +LK N + AI++L+ RGL+ EI R++LGYAP W+ L K F NN
Sbjct: 116 MSEVSQYYQKKLKYNGQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNLEKAFP--NNQRE 173
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L S+G+++ K+ YDR+R RIMFPI + +G++IGFGGR++ + K
Sbjct: 174 LLSTGMLIKSDEGKI-----------YDRYRNRIMFPIHDRNGRVIGFGGRVLDKDQKPK 222
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPET LF KS ELYGL + + + +++ EGYMDVI L+Q G VA LGTA
Sbjct: 223 YLNSPETVLFQKSRELYGLHQVLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 282
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
++ HI+ + +T +IF FDGD AG++AA RALE L + F+FLP+++DPDS
Sbjct: 283 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 342
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIE-YLFKIIPLSSSL 298
+R G F + + +A L +FF + + + NL + ++ YL K++ S
Sbjct: 343 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMV--EGSY 400
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSS 327
+ +I LS++ + + + NL + S
Sbjct: 401 KQLLIDDLSRLTHIESHRLTNLITDKSES 429
>gi|344205771|ref|YP_004790912.1| DNA primase [Stenotrophomonas maltophilia JV3]
gi|343777133|gb|AEM49686.1| DNA primase [Stenotrophomonas maltophilia JV3]
Length = 579
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 192/361 (53%), Gaps = 26/361 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFL-DYNNINTLA 61
A+ F++ L+ S +A ++L RG++EE RF +GYAP+ ++ L D + L
Sbjct: 120 AATKFFQNNLQGSDKARSYLDGRGVDEENRARFQIGYAPDGYSGLRDALGKDERRMKLLD 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+GL +K ++ V YD+FR R+MFPI + G++I FGGR+ + + KY+
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRVFEKDDGPKYL 228
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LGTA T
Sbjct: 229 NSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLGTATTP 288
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + + F FDGD AGRRA +ALE L D + FLFLPD DPD+ +R
Sbjct: 289 DHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPDTIVR 348
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G + F++++ +A L QFF +E+ NL T+ + + + IP
Sbjct: 349 KEGAEAFNERLKQATPLSQFFFDELTREINLGTLDGKARLAERAKPMLAQIP-------- 400
Query: 302 IISSLSKIIKVSFNEINNLFKI--NTSSIKHKTIEKKNIQPIC---IEYQIMKLLISYPS 356
+ ++K ++ L T + + ++ IQP+ + + +L+ PS
Sbjct: 401 -DGAFGDLMKQQLAQLTGLGGTAQATRAPMPQRQPQRTIQPVAKRSLVRGAIAVLLQQPS 459
Query: 357 L 357
L
Sbjct: 460 L 460
>gi|345300883|ref|YP_004830241.1| DNA primase [Enterobacter asburiae LF7a]
gi|345094820|gb|AEN66456.1| DNA primase [Enterobacter asburiae LF7a]
Length = 581
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 109/271 (40%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ LK++ + A +L +RGL++++I RF +GYAP W N L + + + +L +
Sbjct: 126 FYQQSLKHTAAEPARQYLTQRGLSDDVIARFAIGYAPPGWDNVLKRFGGNSEDRKSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLMPQVDLST 384
>gi|304312383|ref|YP_003811981.1| DNA primase [gamma proteobacterium HdN1]
gi|301798116|emb|CBL46338.1| DNA primase [gamma proteobacterium HdN1]
Length = 724
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 126/345 (36%), Positives = 199/345 (57%), Gaps = 14/345 (4%)
Query: 4 ASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
A F+ QLK S+E A+ +L+KR L+ EII RF LGYAP W+ L + L
Sbjct: 120 ARAFFSAQLKKSRERERALGYLRKRQLDAEIIERFQLGYAPPGWDNLISALGTSSQAKAL 179
Query: 61 A-SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
+G+VV ++ +P ++ + YDRFR RIMFPI++ G+ I FGGR++ D + K
Sbjct: 180 LLQTGMVVQ---SQQEHTPS-QQARSYDRFRDRIMFPIRDASGRTIAFGGRVLGD-EKPK 234
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK LYG +EA+ A K ++ EGYMDVI L+Q G VA LGTAC
Sbjct: 235 YLNSPETPVFHKGKTLYGFYEARQARGKLERFIVVEGYMDVIALAQSGITCAVATLGTAC 294
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T H++ + + ++F FDGD+AGR AA RALE L + + +F FLPD DPD+
Sbjct: 295 TREHVETLFRIVDEVVFCFDGDRAGRAAAWRALENTLPAMREGRTARFHFLPDGEDPDTQ 354
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
+RK G ++F ++ +A+ L ++ + ++ N++T+ K + L + +P L+
Sbjct: 355 VRKDGPELFLAQLQKALPLPEYLFDHLMGELNIQTLDGRAKLAHLALPLIEQLP-KGVLQ 413
Query: 300 FKIISSLSKIIKVSFNEINNLFKI----NTSSIKHKTIEKKNIQP 340
+I L++++++S + + ++ K S+ H + +P
Sbjct: 414 ELMIDRLAELVRMSRSSLESMVKRAAPEPPSTSGHSQVRAPQKEP 458
>gi|227113749|ref|ZP_03827405.1| DNA primase [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 584
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 201/365 (55%), Gaps = 28/365 (7%)
Query: 5 SDFYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ L S A+ +L++RGL+ E+I F +G+AP W N L + + ++ +TL
Sbjct: 124 SGFYQQALSQSVGTPALQYLQQRGLSAEVISHFAIGFAPPGWDNVLKRFGRNNDDRSTLN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V ++ + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------DQGRTYDRFRERVMFPIRDKRGRVIAFGGRVLGDGT-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 232 NSPETEIFHKGRQLYGLYEAQQNHPELKRLLVVEGYMDVVALAQFGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+ ++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 DHIQLLFRATDLVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
+ G F +++ +A+ L QF E + ++ + K L +P +LR
Sbjct: 352 QEGKVAFEQRMEQALPLSQFLFETLQQQVDMSSPDGRTKLSTLALPLIGQVP-GETLRLY 410
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEK-KNIQPICIEYQIMK----LLISYPS 356
+ L N++ L + K E+ ++ QP ++ M+ LL+ P
Sbjct: 411 LRQQLG-------NKLGILDDSQLDRLLPKVAEQAQSYQPPQLKVTTMRILIGLLVQNPR 463
Query: 357 LINEI 361
L E+
Sbjct: 464 LATEV 468
>gi|2494142|sp|P71481.1|PRIM_LEGPN RecName: Full=DNA primase
gi|1575484|gb|AAB09542.1| LpdnaG [Legionella pneumophila]
Length = 576
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 190/329 (57%), Gaps = 17/329 (5%)
Query: 1 MICASDFYKIQLK-NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINT 59
M S +Y+ +LK N + AI++L+ RGL+ EI R++LGYAP W+ L K F NN
Sbjct: 115 MSEVSQYYQKKLKYNGQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNLEKAFP--NNQRE 172
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L S+G+++ K+ YDR+R RIMFPI + +G++IGFGGR++ + K
Sbjct: 173 LLSTGMLIKSDEGKI-----------YDRYRNRIMFPIHDRNGRVIGFGGRVLDKDQKPK 221
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPET LF KS ELYGL + + + +++ EGYMDVI L+Q G VA LGTA
Sbjct: 222 YLNSPETVLFQKSRELYGLHQVLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 281
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
++ HI+ + +T +IF FDGD AG++AA RALE L + F+FLP+++DPDS
Sbjct: 282 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 341
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIE-YLFKIIPLSSSL 298
+R G F + + +A L +FF + + + NL + ++ YL K++ S
Sbjct: 342 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMV--EGSY 399
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSS 327
+ +I LS++ + + + NL + S
Sbjct: 400 KQLLIDDLSRLTHIESHRLTNLITDKSES 428
>gi|192361440|ref|YP_001981273.1| DNA primase [Cellvibrio japonicus Ueda107]
gi|190687605|gb|ACE85283.1| DNA primase [Cellvibrio japonicus Ueda107]
Length = 694
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 115/277 (41%), Positives = 171/277 (61%), Gaps = 15/277 (5%)
Query: 4 ASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINT 59
A DFY+ QL+ A+N+LK RGL+ + + +G+AP W N L + D ++ +
Sbjct: 123 ADDFYQHQLRQHPSKHLAVNYLKGRGLDGKTAKTYGVGFAPPGWDNLLKTLGQDDDDKHL 182
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L G+++ + K K YDRFR RIMFPI++T G++IGFGGR++ D ++ K
Sbjct: 183 LIQGGMLIHQEQEK----------KLYDRFRHRIMFPIRDTRGRVIGFGGRVLGD-DKPK 231
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGL+EA+ A + +L+ EGYMDV+ L+QFG VA LGTAC
Sbjct: 232 YLNSPETPVFHKGQELYGLYEARLAYRELPRLLVVEGYMDVVSLAQFGIGYGVATLGTAC 291
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
H+ + YT+ ++F FDGD+AGR AA RAL+ L D + +KFLFLP+ DPD+
Sbjct: 292 GPDHLDRAFKYTSEVVFCFDGDKAGRSAALRALDAALETMADGRAVKFLFLPEGEDPDTL 351
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIK 276
+R+ G F + A+ L + + + N++T++
Sbjct: 352 VRQIGPDKFEHMIELAVPLEDYLFDAVAEGLNIRTME 388
>gi|194364101|ref|YP_002026711.1| DNA primase [Stenotrophomonas maltophilia R551-3]
gi|194346905|gb|ACF50028.1| DNA primase [Stenotrophomonas maltophilia R551-3]
Length = 579
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 124/362 (34%), Positives = 193/362 (53%), Gaps = 28/362 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFL-DYNNINTLA 61
A+ F++ L+ S +A ++L RG++EE RF +GYAP+ ++ L D + L
Sbjct: 120 AATKFFQSNLQGSDKARSYLDGRGVDEENRARFQIGYAPDGYSGLRDALGKDERRMKLLD 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+GL +K ++ V YD+FR R+MFPI + G++I FGGR+ + + KY+
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRVFEKDDGPKYL 228
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LGTA T
Sbjct: 229 NSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLGTATTP 288
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + + F FDGD AGRRA +ALE L D + FLFLPD DPD+ +R
Sbjct: 289 DHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPDTIVR 348
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G + F++++ +A L QFF +E+ NL T+ + + + IP
Sbjct: 349 KEGAEAFNERLKQATPLSQFFFDELTREINLGTLDGKARLAERAKPMLAQIP-------- 400
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEK---KNIQPIC---IEYQIMKLLISYP 355
+ ++K ++ L N + + ++ + IQP+ + + +L+ P
Sbjct: 401 -DGAFGDLMKQQLAQLTGLGG-NAQAARAPMPQRQPSRAIQPVAKRSLVRGAIAVLLQQP 458
Query: 356 SL 357
SL
Sbjct: 459 SL 460
>gi|432803259|ref|ZP_20037214.1| DNA primase [Escherichia coli KTE84]
gi|431347351|gb|ELG34244.1| DNA primase [Escherichia coli KTE84]
Length = 582
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 167/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I + TN++I +DGD+AGR AA RALE + Y D + ++F+FLPD DPD+ +RK
Sbjct: 294 IHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMADGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +A L F ++ +L +
Sbjct: 354 GKEAFEARMEQAQPLSMFLFNNLLPQVDLSS 384
>gi|407715365|ref|YP_006836645.1| DNA primase [Cycloclasticus sp. P1]
gi|407255701|gb|AFT66142.1| DNA primase [Cycloclasticus sp. P1]
Length = 574
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 129/365 (35%), Positives = 193/365 (52%), Gaps = 19/365 (5%)
Query: 5 SDFYKIQLKN---SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTL 60
SDFY+ QL+ S A +LK RGL E+ F LG+AP W N L+ + D ++++ L
Sbjct: 123 SDFYQQQLRQHGASHIATEYLKNRGLTGEVAKTFQLGFAPPGWSNLLSSLGQDNDSLHQL 182
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
GLVV E K YDRFR RI+FPI+N GQ IGFGGR++ D E KY
Sbjct: 183 GELGLVVTN-----------ENNKTYDRFRERIIFPIRNKRGQTIGFGGRVL-DGGEPKY 230
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETPL+HK E+YGL+EA + K +++ EGY+DVI L Q G VA LGTA T
Sbjct: 231 LNSPETPLYHKGREVYGLYEALKSSTKIQQIIVVEGYLDVISLYQQGVTNAVAALGTAIT 290
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H+ + ++++ DGD AG++AA RA+ L + IK L L + DPDS I
Sbjct: 291 REHVDLLFRSVSTLVICMDGDTAGQKAAWRAVTNALPALRTGRQIKVLLLAEGEDPDSLI 350
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R+ G F + V +A L +F + + + L TI+ + L +P +
Sbjct: 351 REKGASHFEQLVEQATPLSSYFFDYLGKQHPLTTIEGRAGFMEQAKPLLDTLPAGAFAEL 410
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
+ L+++ K+ FK + + ++K P+ ++ L++ P+L+
Sbjct: 411 -MKKQLAQLTKMEKQGAAASFKPRFGA--RQVVKKTGAAPLSAMRHLIMLILHEPALVQR 467
Query: 361 INSED 365
IN++D
Sbjct: 468 INTQD 472
>gi|183597879|ref|ZP_02959372.1| hypothetical protein PROSTU_01214 [Providencia stuartii ATCC 25827]
gi|386744244|ref|YP_006217423.1| DNA primase [Providencia stuartii MRSN 2154]
gi|188022640|gb|EDU60680.1| DNA primase [Providencia stuartii ATCC 25827]
gi|384480937|gb|AFH94732.1| DNA primase [Providencia stuartii MRSN 2154]
Length = 581
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 202/348 (58%), Gaps = 31/348 (8%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY L + + +A ++L +RGL+ ++I F++G+AP W N L K ++ + L +
Sbjct: 126 FYHAALNHPSASKAKDYLSQRGLSADVIEHFSIGFAPVGWDNLLKKFAVNPESRKQLDDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V + + YDRFR R+MFPI++ G++I FGGR++ D+ KY+NS
Sbjct: 186 GMLVTN-----------DSGRTYDRFRERVMFPIRDRRGRVIAFGGRVLGDA-LPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +L+GL+EA + +L+ EGYMDV+ L+Q+G VA LGT+ TS H
Sbjct: 234 PETDIFHKGRQLFGLYEATQHNSELDKLLVVEGYMDVVALAQYGIRYAVASLGTSTTSEH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPDS +RK
Sbjct: 294 IQLLYRSTDTVICCYDGDRAGREAAWRALENALPYLTDGRQLRFMFLPDGEDPDSLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK-SKYNIEYLFKIIPLSSSLRFKI 302
G + F ++ +A +L F + ++ +LKT + K SK I L K IP +LR +
Sbjct: 354 GKEAFELRMNDAQTLSSFLFDSLVPQVDLKTQEGRAKFSKLAIP-LIKQIP-GETLRLYM 411
Query: 303 ISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKL 350
L I + +I+ + + I+++N +P + YQ KL
Sbjct: 412 AQELGNFIGIP--DISQVLAM---------IDRENAEP--VNYQAPKL 446
>gi|270263178|ref|ZP_06191448.1| DNA primase [Serratia odorifera 4Rx13]
gi|386824944|ref|ZP_10112072.1| DNA primase [Serratia plymuthica PRI-2C]
gi|270042866|gb|EFA15960.1| DNA primase [Serratia odorifera 4Rx13]
gi|386378111|gb|EIJ18920.1| DNA primase [Serratia plymuthica PRI-2C]
Length = 582
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 135/446 (30%), Positives = 237/446 (53%), Gaps = 29/446 (6%)
Query: 5 SDFYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ L + A N+L++RGL++++I F +G+AP W NAL + D + L
Sbjct: 124 STFYQQSLHQPSGTPARNYLQQRGLSDDVIRHFAIGFAPAGWDNALKRFGRDADTRLALN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V ++ + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIAFGGRVLGDGM-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+Q+G VA LGT+ T+
Sbjct: 232 NSPETEVFHKGRQLYGLYEAQQNHPTPQRLLVVEGYMDVVALAQYGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T++++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 EHIQLLFRATDNVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G F +++ A L F E ++ +L + K L +P +LR
Sbjct: 352 KEGKDAFEQRMELAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLITQVP-GETLRLY 410
Query: 302 IISSL-SKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
+ L SK+ + ++++ L + T + ++ + ++ LL+ P L
Sbjct: 411 LRQQLGSKLGLLDDSQLDKLMPKQAENA--NTYQAPQLKRTTMRI-LIGLLVQNPQLATL 467
Query: 361 INSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNFESIIVK-- 416
I S + + +K Q + +F +L+ T + + + + ++ + K+++ E++
Sbjct: 468 IPSLEGLEQTK--QAGLPLFVELVQTC-LAQPGLTTGQLLEQYRDNKLSQQLETLATWNH 524
Query: 417 --IQDNFEYSIEIAKKTLLDAIYKDR 440
++D E + +L D++ + R
Sbjct: 525 MIVEDRVEQTFLDTLASLYDSVLEQR 550
>gi|387769883|ref|ZP_10126077.1| DNA primase [Pasteurella bettyae CCUG 2042]
gi|386905639|gb|EIJ70398.1| DNA primase [Pasteurella bettyae CCUG 2042]
Length = 583
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 114/270 (42%), Positives = 166/270 (61%), Gaps = 11/270 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
S+FY+ QL S A +L+KRGL+EE+I RF +G+ P+ +N++ + F N
Sbjct: 128 SEFYQQQLPISIPAQAYLQKRGLSEEVIRRFAIGFVPDSFNSVLRQFAK----NRSDQEK 183
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L ++++ ++ V YDRFR RIMFPI++ G+ I FGGR++ D KY+NSP
Sbjct: 184 LFDLGMLSRNDRGDV------YDRFRNRIMFPIRDRRGRTIAFGGRVLTDER-PKYLNSP 236
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK NE+YGL+EA A E +L+ EGYMDV+ L+QFG +A LGTA T I
Sbjct: 237 ETVTYHKGNEIYGLYEALQANETPEMLLVVEGYMDVVALAQFGVDYAIASLGTATTPEQI 296
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
++ T I+ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 297 QQAFRVTEQIVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYG 356
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
+ F + + +A SL F ++ +L +
Sbjct: 357 KQGFEEYLQKAQSLSDFMFAHLVAQVDLSS 386
>gi|157374212|ref|YP_001472812.1| DNA primase [Shewanella sediminis HAW-EB3]
gi|157316586|gb|ABV35684.1| DNA primase [Shewanella sediminis HAW-EB3]
Length = 573
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 206/367 (56%), Gaps = 32/367 (8%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNN 56
M AS +++ QL+ + ++ + +L RGL+ E++ FN+G+AP+ W+ L ++ + +
Sbjct: 117 MEEASLYFQNQLRQHNDKQKVLEYLTHRGLSNEVVEHFNIGFAPDGWDGLLSRYRQNQDA 176
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ L ++G+V++ + KRYDRFR R+MFPI++ G++IGFGGR++ D
Sbjct: 177 QDKLLTAGMVIEN-----------DNGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT 225
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPETP+FHK NELYGL+E K VLI EGYMDV+ L+QFG VA LG
Sbjct: 226 -PKYLNSPETPIFHKGNELYGLYELKQRHRDPKQVLIVEGYMDVVALAQFGVDYAVASLG 284
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
T+ T+ + +L +I +DGD+AG AA RALE L +KF+FLP+ DP
Sbjct: 285 TSTTAEQFQLLLRSAKEVICCYDGDKAGVEAAWRALETALPLLKPGNQVKFMFLPEGEDP 344
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS 296
D+ +R+ G ++F +V +A L +F E + Y K + + I L+
Sbjct: 345 DTMVRQVGKEVFESQVNDAQELPEFLFETLAKRYG--------SDKGTLAK--QAITLTE 394
Query: 297 SLRFKIISSL---SKIIKVSFNEINNL-FKINTSSIKH-KTIEKKNIQPICIEYQI-MKL 350
++ ++ SL S K+ N L K+ SS + K ++KK ++ ++ + L
Sbjct: 395 KIQDTVLQSLLLESLAYKLGMNSAEELKRKLGFSSKEQVKPLQKKALKGRGTPLRLAIAL 454
Query: 351 LISYPSL 357
L+ +PSL
Sbjct: 455 LVQHPSL 461
>gi|333929231|ref|YP_004502810.1| DNA primase [Serratia sp. AS12]
gi|333934184|ref|YP_004507762.1| DNA primase [Serratia plymuthica AS9]
gi|386331054|ref|YP_006027224.1| DNA primase [Serratia sp. AS13]
gi|421785640|ref|ZP_16222065.1| DNA primase [Serratia plymuthica A30]
gi|333475791|gb|AEF47501.1| DNA primase [Serratia plymuthica AS9]
gi|333493291|gb|AEF52453.1| DNA primase [Serratia sp. AS12]
gi|333963387|gb|AEG30160.1| DNA primase [Serratia sp. AS13]
gi|407752255|gb|EKF62413.1| DNA primase [Serratia plymuthica A30]
Length = 582
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 135/446 (30%), Positives = 238/446 (53%), Gaps = 29/446 (6%)
Query: 5 SDFYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ L + A N+L++RGL++++I F +G+AP W NAL + D ++ L
Sbjct: 124 SAFYQQSLHQPSGTPARNYLQQRGLSDDVIRHFAIGFAPAGWDNALKRFGRDADSRLALN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V ++ + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIAFGGRVLGDGM-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ +L+ EGYMDV+ L+Q+G VA LGT+ T+
Sbjct: 232 NSPETEVFHKGRQLYGLYEAQQNHPTPQRLLVVEGYMDVVALAQYGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T++++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 EHIQLLFRATDNVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G F +++ A L F E ++ +L + K L +P +LR
Sbjct: 352 KEGKDAFEQRMELAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLITQVP-GETLRLY 410
Query: 302 IISSL-SKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
+ L SK+ + ++++ L + T + ++ + ++ LL+ P L
Sbjct: 411 LRQQLGSKLGLLDDSQLDKLMPKQAENA--NTYQAPQLKRTTMRI-LIGLLVQNPQLATL 467
Query: 361 INSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNFESIIVK-- 416
I S + + +K Q + +F +L+ T + + + + ++ + K+++ E++
Sbjct: 468 IPSLEGLEQTK--QAGLPLFVELVQTC-LAQPGLTTGQLLEQYRDNKLSQQLETLATWNH 524
Query: 417 --IQDNFEYSIEIAKKTLLDAIYKDR 440
++D E + +L D++ + R
Sbjct: 525 MIVEDRVEQTFLDTLASLYDSVLEQR 550
>gi|254428780|ref|ZP_05042487.1| DNA primase catalytic core, N-terminal domain family [Alcanivorax
sp. DG881]
gi|196194949|gb|EDX89908.1| DNA primase catalytic core, N-terminal domain family [Alcanivorax
sp. DG881]
Length = 649
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/317 (38%), Positives = 185/317 (58%), Gaps = 17/317 (5%)
Query: 4 ASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINT 59
A FY QL+ + E A+N+LK RGL+ EI +F +G+AP + N +N + L ++
Sbjct: 123 AEKFYAQQLRQAPERQKAVNYLKNRGLSGEIAKKFAIGFAPPGYDNLINGLSLTETSLEH 182
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
+ GL+V K + + YD+FR RI+FPI+++ G+ IGFGGR++ D + K
Sbjct: 183 ALTGGLLVRKD----------DTGRTYDKFRDRIIFPIRDSRGRTIGFGGRVLGD-GKPK 231
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGL+E + + ++S + + EGYMDVI L+Q G VA LGTA
Sbjct: 232 YLNSPETPVFHKGQELYGLWEWRQSRDRSDRLYVVEGYMDVIALTQHGVPNVVATLGTAT 291
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T H +K+ N +I FDGD+AG RAA RALE L D K ++FLFLPD DPD+
Sbjct: 292 TEDHARKLFRQVNEVILCFDGDKAGVRAAWRALESLLPALDDGKQVRFLFLPDGEDPDTL 351
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK-SKYNIEYLFKII-PLSSS 297
+R+ G + +A +L + + +L T+ + ++ + +L K P+ +
Sbjct: 352 VRQQGPEALRALTDKADTLSTYLFRHLSEGLDLDTVDGRARLARLALPFLDKPAGPVYRA 411
Query: 298 LRFKIISSLSKIIKVSF 314
L + +S L+++ K S
Sbjct: 412 LLTEELSRLTRLDKESL 428
>gi|397668022|ref|YP_006509559.1| DNA primase [Legionella pneumophila subsp. pneumophila]
gi|395131433|emb|CCD09701.1| DNA primase [Legionella pneumophila subsp. pneumophila]
Length = 580
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 190/329 (57%), Gaps = 17/329 (5%)
Query: 1 MICASDFYKIQLK-NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINT 59
M S +Y+ +LK N + AI++L+ RGL+ EI R++LGYAP W+ L K F NN
Sbjct: 116 MSEVSQYYQKKLKYNGQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNLEKAF--PNNQRE 173
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L S+G+++ K+ YDR+R RIMFPI + +G++IGFGGR++ + K
Sbjct: 174 LLSTGMLIKSDEGKI-----------YDRYRNRIMFPIHDRNGRVIGFGGRVLDKDQKPK 222
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPET LF KS ELYGL + + + +++ EGYMDVI L+Q G VA LGTA
Sbjct: 223 YLNSPETVLFQKSRELYGLHQVLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 282
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
++ HI+ + +T +IF FDGD AG++AA RALE L + F+FLP+++DPDS
Sbjct: 283 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 342
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIE-YLFKIIPLSSSL 298
+R G F + + +A L +FF + + + NL + ++ YL K++ S
Sbjct: 343 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMV--EGSY 400
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSS 327
+ +I L+++ + + + NL + S
Sbjct: 401 KQLLIDDLARLTHIESHRLTNLITDKSES 429
>gi|359443412|ref|ZP_09233254.1| DNA primase [Pseudoalteromonas sp. BSi20429]
gi|358034824|dbj|GAA69503.1| DNA primase [Pseudoalteromonas sp. BSi20429]
Length = 583
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 133/369 (36%), Positives = 206/369 (55%), Gaps = 29/369 (7%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M+ + FY+ QLK NS I ++K RGL+ E + +F +GYAP+EW+ L
Sbjct: 121 MLHTARFYQHQLKHHSNSAAVIEYVKGRGLSGETVKKFMIGYAPSEWDGLCLQL----GR 176
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
N LV K+ ++ ++P +++D FR R+MFPI++ G++I FGGR+++
Sbjct: 177 NKEQKEQLVELKLASE--KTPG----RQFDFFRDRLMFPIRDKRGRVIAFGGRVMQADQG 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+EAK A +K +V++ EGYMDV+ L++ G VA LGT
Sbjct: 231 PKYLNSPETRIFHKGFELYGLYEAKQAHKKLEHVMVVEGYMDVVALAEQGIEYAVASLGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A TS H+ + T+ +I +DGD+AGR AA RALE L Y D K ++F FLPD DPD
Sbjct: 291 ATTSEHMHTLFRTTDKVICCYDGDRAGRDAAWRALENALPYLNDGKALQFTFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL--- 294
S ++K G + F ++ +A + ++ +L D K+K L +PL
Sbjct: 351 SLVQKEGKEQFELRLSQADDFTKVLFNKLSQEVDLTL--DSGKAK----LLSAALPLIEK 404
Query: 295 --SSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
S + I+ L ++I + ++NN ++ T +H K I P+ Q + +LI
Sbjct: 405 IPSEFYQENILEQLGRLIGRTREQLNN--RLKTPKQQHSIERKFKITPM---RQAIGILI 459
Query: 353 SYPSLINEI 361
+P+L +
Sbjct: 460 QHPNLAKNV 468
>gi|300718454|ref|YP_003743257.1| DNA primase [Erwinia billingiae Eb661]
gi|299064290|emb|CAX61410.1| DNA primase [Erwinia billingiae Eb661]
Length = 581
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 162/258 (62%), Gaps = 13/258 (5%)
Query: 18 AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASSGLVVDKIINKVNQ 76
A +L RGL++ +I F++GYAP W NAL + + ++ +L +G++V
Sbjct: 139 AREYLANRGLSDAVIKHFSIGYAPAGWDNALKRFGRNQDDRQSLIDAGMLVTN------- 191
Query: 77 SPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSNELY 136
++ + YDRFR R+MFPI + G++IGFGGR++ D KY+NSPET +FHK +LY
Sbjct: 192 ----DQGRSYDRFRERVMFPIHDKRGRVIGFGGRVLGDGM-PKYLNSPETDIFHKGRQLY 246
Query: 137 GLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNSIIF 196
GL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T HI+ + T+++I
Sbjct: 247 GLYEAQKNHPEPAKLLVVEGYMDVVALAQFGIDYAVASLGTSTTPEHIQLLFRTTDTVIC 306
Query: 197 SFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKVLEAM 256
+DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +RK G + F ++ +AM
Sbjct: 307 CYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARMEQAM 366
Query: 257 SLLQFFLEEIILNYNLKT 274
L F + ++ +L++
Sbjct: 367 PLSAFLFDSLLPQVDLRS 384
>gi|288941559|ref|YP_003443799.1| DNA primase [Allochromatium vinosum DSM 180]
gi|288896931|gb|ADC62767.1| DNA primase [Allochromatium vinosum DSM 180]
Length = 582
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 134/407 (32%), Positives = 209/407 (51%), Gaps = 36/407 (8%)
Query: 1 MICASDFYKIQLKNSKEA---INFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNN 56
M A+ +Y+ QL+ EA + +LK+RGL EI F LGYAP N L + D
Sbjct: 117 MEDAALYYRRQLREHPEAQRAVAYLKERGLTGEIAAHFGLGYAPARGNPVLAQFGRDTAT 176
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
L + GLV ++ + P YD+FR R++FPI++ G++IGFGGR++ D
Sbjct: 177 RTRLQTVGLVSEQ-----DGWP-------YDKFRDRVLFPIRDRRGRVIGFGGRVLGD-G 223
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL EA+ A +++ EGY+DVI L+Q G VA LG
Sbjct: 224 KPKYLNSPETPIFHKGRELYGLHEAQQANRTFDALIVVEGYLDVIALAQSGITNAVATLG 283
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H+ ++L I+F FDGD+AGR AA +ALE L AT + I+FLFL + DP
Sbjct: 284 TATTPEHLNQLLKLAPDIVFCFDGDRAGRAAAWKALETALPLATGHQAIRFLFLSEGDDP 343
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS 296
D+ +R+ G + F + +A L F E + + + T+ + ++ +P +
Sbjct: 344 DTLVRREGAEGFRSGLKQAQPLSDFLFEHLSASMDTTTMDGRARFASQLQPYIDRLP-AG 402
Query: 297 SLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPI--CIEYQIMKLLISY 354
R +I L+ + + + + + QP + Q++ LL+
Sbjct: 403 FYRDLLIRRLADFTGAPAQ------ALRPAVARRRQPAARLAQPTRPSLVAQVIALLLDR 456
Query: 355 PSLINE---INSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSK 398
P L + +N + + + +Q + + QL+D I + D SK
Sbjct: 457 PDLAPQALALNDD----WRRSTQRGIDVLIQLLD---ILRQSPDLSK 496
>gi|33151867|ref|NP_873220.1| DNA primase [Haemophilus ducreyi 35000HP]
gi|33148088|gb|AAP95609.1| DNA primase [Haemophilus ducreyi 35000HP]
Length = 579
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 161/271 (59%), Gaps = 13/271 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
S FY+ L + +L++RGL+ EII RF +G+APN +A L K ++ + I L +
Sbjct: 126 SQFYQQHLVQDSASQAYLQQRGLSAEIISRFEIGFAPNSMDAVLCKFGINRDEIQKLLDT 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ +V YD+FR R+MFPI++ G+++ FGGR++ D + KY+NS
Sbjct: 186 GMLSQHDSGRV-----------YDKFRNRVMFPIRDKRGRVVAFGGRVMGD-EKPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGLF+A E +L+ EGYMDV+ L+QFG VA LGTA T
Sbjct: 234 PESATYHKGNELYGLFQALQQNENPAALLVVEGYMDVVALAQFGVNNAVASLGTATTGEQ 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+++ T +I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS+IR+
Sbjct: 294 IQQMFRCTEQVICCYDGDRAGREAAWRAFENALPYLQDGRQLKFIFLPDGEDPDSFIRQQ 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F + MSL F + +I +L +
Sbjct: 354 GKAGFEAYLQAGMSLSDFLFDNLIAQVDLSS 384
>gi|424666779|ref|ZP_18103804.1| DNA primase [Stenotrophomonas maltophilia Ab55555]
gi|401069448|gb|EJP77969.1| DNA primase [Stenotrophomonas maltophilia Ab55555]
Length = 579
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 124/362 (34%), Positives = 194/362 (53%), Gaps = 28/362 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFL-DYNNINTLA 61
A+ F++ L++S +A ++L RG++EE RF +GYAP+ ++ L D + L
Sbjct: 120 AAARFFQKNLESSDKARSYLDGRGVDEENRARFQIGYAPDGYSGLRDALGKDERRMKLLD 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+GL +K ++ V YD+FR R+MFPI + G++I FGGR+ + + KY+
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRVFEKDDGPKYL 228
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LGTA T
Sbjct: 229 NSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLGTATTP 288
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + + F FDGD AGRRA +ALE L D + FLFLPD DPD+ +R
Sbjct: 289 DHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPDTIVR 348
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G + F++++ +A L QFF +E+ NL T+ + + + IP
Sbjct: 349 KEGAEAFNERLKQATPLSQFFFDELTREINLGTLDGKARLAERAKPMLAQIP-------- 400
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEK---KNIQPICIEYQI---MKLLISYP 355
+ ++K ++ L N + + ++ + IQP+ + + +L+ P
Sbjct: 401 -DGAFGDLMKQQLAQLTGLGG-NAQAARTPMPQRQPSRTIQPVARRSLVRGAIAVLLQQP 458
Query: 356 SL 357
SL
Sbjct: 459 SL 460
>gi|54298251|ref|YP_124620.1| DNA primase [Legionella pneumophila str. Paris]
gi|53752036|emb|CAH13462.1| DNA primase [Legionella pneumophila str. Paris]
Length = 577
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 190/329 (57%), Gaps = 17/329 (5%)
Query: 1 MICASDFYKIQLK-NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINT 59
M S +Y+ +LK N + AI++L+ RGL+ EI R++LGYAP W+ L K F NN
Sbjct: 116 MSEVSQYYQKKLKYNGQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNLEKAFP--NNQRE 173
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L S+G+++ K+ YDR+R RIMFPI + +G++IGFGGR++ + K
Sbjct: 174 LLSTGMLIKSDEGKI-----------YDRYRNRIMFPIHDRNGRVIGFGGRVLDKDQKPK 222
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPET LF KS ELYGL + + + +++ EGYMDVI L+Q G VA LGTA
Sbjct: 223 YLNSPETVLFQKSRELYGLHQVLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 282
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
++ HI+ + +T +IF FDGD AG++AA RALE L + F+FLP+++DPDS
Sbjct: 283 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 342
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIE-YLFKIIPLSSSL 298
+R G F + + +A L +FF + + + NL + ++ YL K++ S
Sbjct: 343 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMV--EGSY 400
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSS 327
+ +I L+++ + + + NL + S
Sbjct: 401 KQLLIDDLARLTHIESHRLTNLITDKSES 429
>gi|451812235|ref|YP_007448689.1| DNA primase [Candidatus Kinetoplastibacterium galatii TCC219]
gi|451778137|gb|AGF49085.1| DNA primase [Candidatus Kinetoplastibacterium galatii TCC219]
Length = 591
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 124/320 (38%), Positives = 183/320 (57%), Gaps = 12/320 (3%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
MI A +Y L S AI++LKKRG++ + I FNLG++ N + +L+ +F DY N + L
Sbjct: 116 MIRAQSYYSDLLNISSAAISYLKKRGISNDFIRFFNLGWSDNGYKSLSNIFADYYNNSYL 175
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
GLV+ K RYDRFR RIMFPI+N G ++GFG R I + + KY
Sbjct: 176 IDVGLVIKK-----------SDENRYDRFRERIMFPIRNQYGAVVGFGARTIANI-QPKY 223
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPET +F K ELYGL+E++ I+ G V++ EGYMDVI L+Q G VA LGT+ T
Sbjct: 224 LNSPETVIFSKGRELYGLWESRTNIKSKGVVIVVEGYMDVISLTQHGINNVVAALGTSIT 283
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
I+K+L + I+FSFDGD AG+ AA +AL +C+ D I+FLFL D YDPD YI
Sbjct: 284 KDQIRKLLSVSEKIVFSFDGDIAGKNAAWKALLLCISEIKDSNEIRFLFLKDGYDPDLYI 343
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
++ G F + +++ L + ++ + Y++ + I + K + LR
Sbjct: 344 KENGKDAFEDCLKKSIPLSKLLIDSSVSKYSINEAEGRAACWTEISKVLKHMQNCPMLRI 403
Query: 301 KIISSLSKIIKVSFNEINNL 320
+I +++ S N++ L
Sbjct: 404 QIEKEALQLLNFSKNDLRYL 423
>gi|304415464|ref|ZP_07396112.1| DNA primase [Candidatus Regiella insecticola LSR1]
gi|304282693|gb|EFL91208.1| DNA primase [Candidatus Regiella insecticola LSR1]
Length = 588
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 139/438 (31%), Positives = 231/438 (52%), Gaps = 26/438 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI-NTLA 61
+FY+ L + + +A +L++RGLN+ II F +G+AP W+ L K F + N TL
Sbjct: 124 GEFYQQSLNSPPAHQAYRYLEQRGLNKAIIHHFAIGFAPPGWDNLLKRFGNSNETRTTLN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V + YDRFR RIMFPI++ G+II FGGR + DS KY+
Sbjct: 184 HAGMLVTNNTKRC-----------YDRFRERIMFPIRDKRGRIIAFGGRTVDDS-VPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +F KS +LYG +E + +L+ EGYMDV+ L+QFG V LGTA T+
Sbjct: 232 NSPETEIFRKSRQLYGWYEVQVKQPNPSRLLLVEGYMDVVALAQFGIDYAVGSLGTATTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H++ + T+ ++ +DGD+AGR AA R L L Y D + ++F+FLP+ DPD+ IR
Sbjct: 292 EHLQLLFRTTDHVVCCYDGDKAGRSAAWRTLITALPYLNDGRQLRFMFLPEGEDPDTLIR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
+ G F + + +A L +F E ++L +L + K L +P +LR
Sbjct: 352 REGKTAFEQLIDQAQPLSKFLFETLMLQVDLSSPDGRAKLSTLALPLINQVP-GETLRLY 410
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEI 361
+ L + + + + + I T + I+P + ++ LL+ +P L +
Sbjct: 411 LRQELGHKLGIPDDSLLDKL-IPRQVAASNTYRRPQIKPTTMRI-LIALLVQHPHLAASV 468
Query: 362 NSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNFESIIVKIQD 419
S I +K + + +F +L++T + + D++ + ++ + K +K E + I +
Sbjct: 469 PSLQGIKQAKLAG--LPLFIELVETC-LAQPDLNTGQLLEQYRDNKYSKQLEKL--AIWN 523
Query: 420 NFEYSIEIAKKTLLDAIY 437
+ E EI + T LDA++
Sbjct: 524 DIEIK-EIVETTFLDALH 540
>gi|424795034|ref|ZP_18220935.1| DNA primase [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|422795652|gb|EKU24304.1| DNA primase [Xanthomonas translucens pv. graminis ART-Xtg29]
Length = 579
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 130/406 (32%), Positives = 208/406 (51%), Gaps = 30/406 (7%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL+ S +A ++L RG++ + RF +GYAP+ ++AL + + D L
Sbjct: 122 AATKFFQRQLETSDKARSYLDGRGVDADNRTRFQIGYAPDGFSALKDALGTDERRHKLLE 181
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+GL E+ YD+FR R+MFPI + G++I FGGR++ + KY+
Sbjct: 182 RAGLFSKN-----------ERGHVYDKFRDRVMFPIFDRRGRVIAFGGRVMDKDDGPKYL 230
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LGTA TS
Sbjct: 231 NSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLGTATTS 290
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + + F FDGD AGRRA +ALE L D + FLFLPD DPDS +R
Sbjct: 291 EHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPDSIVR 350
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G F+ ++ +A L QFF +E+ NL T+ + + IP
Sbjct: 351 KEGADGFAARLQQATPLSQFFFDELSREVNLATLDGKARLAERARPMLGQIP-------- 402
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIK-HKTIEKKNIQPI----CIEYQIMKLLISYPS 356
+ +++ EI + ++ + K + +P + I++LL + PS
Sbjct: 403 -DGAFGDLMRQRLAEITGIGGPAPAAAQLAKPPPRAMARPTQKRSLVREAIVRLLHT-PS 460
Query: 357 LINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKY 402
L ++ F+ +++ +L++ +H + DI +++
Sbjct: 461 LALDLPPP--YPFAGLRLPGIELMIELLEIVHT-RPDISTGALLEH 503
>gi|383317915|ref|YP_005378757.1| DNA primase, catalytic core [Frateuria aurantia DSM 6220]
gi|379045019|gb|AFC87075.1| DNA primase, catalytic core [Frateuria aurantia DSM 6220]
Length = 575
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 161/292 (55%), Gaps = 13/292 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF--LDYNNINTLA 61
A+ +Y+ QL EA + ++RGL+ +II RF +G+AP ++ L++ + L+
Sbjct: 120 AASWYQQQLAQDSEAQAYCRQRGLDPDIISRFRIGWAPAGYDGLSQAVGRQQARKLELLS 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++ + +RYDRFR R+MFPI + G++I FGGRL KY+
Sbjct: 180 ETGMLASG-----------DHGRRYDRFRQRLMFPIMDRRGRVIAFGGRLTGSEQGPKYL 228
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPETPLFHK EL+ L++ K A K +++ EGYMD I + Q G VA LGTA T
Sbjct: 229 NSPETPLFHKGRELFALWQVKQANPKLERIVVVEGYMDAIAMHQAGLPIAVATLGTATTP 288
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H +++ T ++F FDGD+AGR AA +ALE L D + FLFLPD DPDS IR
Sbjct: 289 EHTEQLFRATADVVFCFDGDRAGRAAAWKALEATLPRMRDGRQAGFLFLPDGEDPDSLIR 348
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
+ G F +++ +AM L + E+ + + ++ + L +P
Sbjct: 349 QEGQAGFQQRISQAMPLSDYLFNELSRDVDTTRLEGRARLAERARPLIARLP 400
>gi|56461301|ref|YP_156582.1| DNA primase [Idiomarina loihiensis L2TR]
gi|56180311|gb|AAV83033.1| DNA primase [Idiomarina loihiensis L2TR]
Length = 581
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 129/365 (35%), Positives = 198/365 (54%), Gaps = 22/365 (6%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M + F++ QLK NS I++LK RGL+ E + RF +GYAP+ W+ L F
Sbjct: 122 MSKTARFFQHQLKHHENSNRVIDYLKGRGLSGETVKRFQIGYAPDAWDGLLSTF----GS 177
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L+ K+IN+ EK + YD FR R+MFPI + G+++GFGGR+I D +
Sbjct: 178 SAPQRQQLLELKLINRN------EKGRHYDFFRDRVMFPIHDRRGRVVGFGGRII-DGDG 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET LFHK +ELYG + + A+ K V I EGYMDV+ LS+ G VA LGT
Sbjct: 231 PKYLNSPETRLFHKGSELYGYWHMQQAVRKPEQVCIVEGYMDVVALSEAGIHYAVASLGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A TS ++++ + I+ +DGD+AGR AA RALE L D + FLFLP+ DPD
Sbjct: 291 ATTSEQLQRLFRTSGRIVCCYDGDRAGRDAAWRALENALPLLRDGLDMAFLFLPEGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSK-YNIEYLFKIIPLSS 296
S +R+ G + F +++ +A ++F E L ++ D +S+ NI S
Sbjct: 351 SVVREHGAEAFERELKKATPFTEYFFEH--LQADIDVSSDAGRSQLLNIAKPLIEKVASE 408
Query: 297 SLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPS 356
R ++ L++ ++ +++ F+ + K E + P+ + + LL+ YP
Sbjct: 409 YYRDTLMQRLAEKLRRETSQLERQFEKPQRQSRPK--ESVKMTPL---RKAIALLLQYPQ 463
Query: 357 LINEI 361
L +
Sbjct: 464 LAQSV 468
>gi|397163876|ref|ZP_10487334.1| DNA primase [Enterobacter radicincitans DSM 16656]
gi|396094431|gb|EJI91983.1| DNA primase [Enterobacter radicincitans DSM 16656]
Length = 581
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 130/386 (33%), Positives = 211/386 (54%), Gaps = 26/386 (6%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L ++ A +L +RGL+ EII RF +GYAP W N L + + N +L +
Sbjct: 126 FYQQSLTQPAAEPARQYLARRGLSSEIIARFAIGYAPPGWDNVLKRFGGNSENRKSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ ++ +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQLDNDEPQRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T ++I +DGD+AGR AA RALE L Y +D + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRVTKNVICCYDGDRAGRDAAWRALETALPYMSDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F ++ +A L F ++ +L T + L +P +LR ++
Sbjct: 354 GKAAFEARMEQAQPLSTFLFNSLLPQADLTTPDGTTQLAALALPLINQVP-GETLRIQLR 412
Query: 304 SSLSKIIKV-SFNEINNLF--KINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
L I + +++ L + S+ + K+ I I LLI P L +
Sbjct: 413 QLLGNKIGIFDDAQLDRLMPKQAENSAPRPAPQLKRTTMRILI-----GLLIQNPELASA 467
Query: 361 INSEDMIIFSKCSQNYVKMFFQLIDT 386
+ S + + S+ + +F +L++T
Sbjct: 468 VPSLEGLDQSRLPG--LGLFAELVNT 491
>gi|254517370|ref|ZP_05129427.1| DNA primase [gamma proteobacterium NOR5-3]
gi|219674208|gb|EED30577.1| DNA primase [gamma proteobacterium NOR5-3]
Length = 634
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 116/297 (39%), Positives = 171/297 (57%), Gaps = 16/297 (5%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M +++FYK LK N + A+++LK RGL I F LG+AP W+ L D
Sbjct: 122 MERSTEFYKDALKQHPNRQAAVDYLKNRGLTGLIARDFGLGFAPPGWDNLRSFLGDDETT 181
Query: 58 NTLA-SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
T A ++G++V +V YDRFR RI+FPI++ G++I FGGR++ D +
Sbjct: 182 QTRAITAGMLVKNDSGRV-----------YDRFRDRIVFPIRDRRGRVIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPE+P+FHK ELYGL+EA+ A K +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPESPIFHKGRELYGLYEARRANRKLERIIVVEGYMDVIALAQAGISYAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA ++ H+++I ++F FDGD+AGR+AA RAL L D + +FLFL + DP
Sbjct: 290 TATSTEHLERIFRVVPEVVFCFDGDEAGRKAAERALHNTLPTMADGRQARFLFLREGEDP 349
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
DS +RK G + F V A+ L +F + ++ T++ L +I+P
Sbjct: 350 DSLVRKDGTQAFLDLVQAAVPLEEFLFQSQAAGLDIGTMEGRASLSKRALPLIRILP 406
>gi|221134906|ref|ZP_03561209.1| DNA primase [Glaciecola sp. HTCC2999]
Length = 593
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 132/369 (35%), Positives = 204/369 (55%), Gaps = 26/369 (7%)
Query: 4 ASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
A+ F++ QLK NS + I++LK RGL+ EI+ + +GYAP EW AL T
Sbjct: 128 AAKFFQHQLKHHANSSKVIDYLKDRGLSGEIVKSWEIGYAPPEWQALADTL-----GATP 182
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+ VD I N + KRYD FR R+MFPI++ G++IGFGGR++ KY
Sbjct: 183 EKAQQCVDLKIMTQN-----DNGKRYDFFRDRLMFPIRDKRGRVIGFGGRVLDAEQGPKY 237
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPET +F K +ELYGL A+N +++ EGYMDV+ LSQF VA LGT+ T
Sbjct: 238 LNSPETRIFFKGSELYGLHRARNMQRHIDRIVVVEGYMDVVALSQFEINYAVASLGTSTT 297
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++ +L T+ I+ +DGD+AGR AA R +E L D K +KF+FLPD DPD+ +
Sbjct: 298 PEHVQLMLRNTDEIVCCYDGDKAGRSAAWRTMENALPLLKDGKQMKFMFLPDGEDPDTMV 357
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
RK G EAM L +F + ++ +N+ +I+ + E L I+ +++
Sbjct: 358 RKIGKTALETLFSEAMPLSKFLFDNLLTRHNVGSIEGKASLRAEAEPLINIV--GGNIQK 415
Query: 301 KI-ISSLSKII-KVSFNEIN-NLFKINTS-----SIKHKTIEKKNIQPICIEYQIMKLLI 352
+I + LSK++ +++ ++ K N + K +K + P+ + +++LLI
Sbjct: 416 EILLGELSKLLGDYDRHQLERDITKANATPNRMLPPKRGAPQKLSQTPVRM---LIRLLI 472
Query: 353 SYPSLINEI 361
+PSL +
Sbjct: 473 EHPSLAQAL 481
>gi|121997891|ref|YP_001002678.1| DNA primase [Halorhodospira halophila SL1]
gi|121589296|gb|ABM61876.1| DNA primase [Halorhodospira halophila SL1]
Length = 614
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 193/380 (50%), Gaps = 36/380 (9%)
Query: 1 MICASDFYKIQLKN---SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M A F++ L+N + A+ +L++RG++ E+ RF LG+AP W+ L + N+
Sbjct: 117 MAHADQFFRDALRNHPARQSAVEYLRQRGISGEVAARFGLGFAPPGWDNLLRQL---NDP 173
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+GLV+++ K YDRFR RI FPI + G+++ FG R++ + E
Sbjct: 174 RPAIRAGLVIER------------DQKTYDRFRDRITFPIHDRRGRVVAFGARVVSE-GE 220
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK E+YGL++A A + G +++ EGYMDVI L+Q G VA LGT
Sbjct: 221 PKYLNSPETPIFHKGREVYGLYQALQAERRPGRLIVVEGYMDVIALTQQGIPGAVATLGT 280
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ +L + ++ FDGD AGR AA RA+E L D+ + L LP+ DPD
Sbjct: 281 ATTAEQATLLLRSADELVLCFDGDDAGRSAALRAVENLLPVLQGDREVGVLLLPEGTDPD 340
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKD----IEKSKYNIEYLFKIIP 293
+R G + F ++ A +++F+L + +L T+ +E++ ++ L + +
Sbjct: 341 DLVRSEGREAFENRLATATPVIEFYLARLGEACDLTTVDGRARLLERASGSLRRLPRGV- 399
Query: 294 LSSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMK---- 349
+R +I L+++ + I+ + + + + + P E + +
Sbjct: 400 ----IRETLIGQLAELTRTEPERIDRILEGRAETPRDDPAPQGRSAPRTPEASLQRTPVR 455
Query: 350 ----LLISYPSLINEINSED 365
LL+ P L D
Sbjct: 456 HAIALLLQQPQLATHAGDPD 475
>gi|336316629|ref|ZP_08571520.1| DNA primase, catalytic core [Rheinheimera sp. A13L]
gi|335879056|gb|EGM76964.1| DNA primase, catalytic core [Rheinheimera sp. A13L]
Length = 574
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 132/359 (36%), Positives = 204/359 (56%), Gaps = 21/359 (5%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+D Y+ QLK A ++L+KRG++E ++ +GYAP+ W+ + K +
Sbjct: 118 MQKAADLYQQQLKQQLHAADYLQKRGISEATATKYGIGYAPDSWDFVLKQL----GASRS 173
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
A L K+I++ +Q + YD FR R+MFPI++ G++IGFGGR+I + KY
Sbjct: 174 ARDQLFEIKLISRNDQG------REYDFFRDRLMFPIRDKRGRVIGFGGRVIGEGT-PKY 226
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPET LFHK ELYGL+EA+ + ++ VLI EGYMDV+GL++ G VA LGTA T
Sbjct: 227 LNSPETRLFHKGRELYGLYEARQSQDRLNRVLIVEGYMDVVGLAEQGISFAVACLGTATT 286
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H+ + T+++ +DGD+AGR AA RAL+ L + D + F+FLPD DPDS +
Sbjct: 287 PDHMHTLFRLTSTVTCCYDGDRAGRDAAWRALQSALPHLKDGVELNFVFLPDGEDPDSLV 346
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIE--YLFKIIPLSSSL 298
+K G + F ++ +AM L Q+ + + +LK+ D KS ++ L K IP S
Sbjct: 347 QKEGKEAFLNRLEQAMPLGQYLFDHLAKELDLKS--DAGKSALWVKGNELIKQIP-SEFY 403
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
R + +L ++ S + N N + ++ K I P+ + + LL+ YP+L
Sbjct: 404 RDALFETLGSLVGKSSQQ--NTAARNQTKVQSKAPVSTKITPM---RRAIALLLQYPAL 457
>gi|148359901|ref|YP_001251108.1| DNA primase DnaG [Legionella pneumophila str. Corby]
gi|296107952|ref|YP_003619653.1| DNA primase DnaG [Legionella pneumophila 2300/99 Alcoy]
gi|148281674|gb|ABQ55762.1| DNA primase DnaG [Legionella pneumophila str. Corby]
gi|295649854|gb|ADG25701.1| DNA primase DnaG [Legionella pneumophila 2300/99 Alcoy]
Length = 577
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 189/329 (57%), Gaps = 17/329 (5%)
Query: 1 MICASDFYKIQLK-NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINT 59
M S +Y+ +LK N + AI +L+ RGL+ EI R++LGYAP W+ L K F NN
Sbjct: 116 MSEVSQYYQKKLKYNGQTAIEYLRNRGLSGEIAKRYHLGYAPEGWHNLEKAFP--NNQRE 173
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L S+G+++ K+ YDR+R RIMFPI + +G++IGFGGR++ + K
Sbjct: 174 LLSTGMLIKSDEGKI-----------YDRYRNRIMFPIHDRNGRVIGFGGRVLDKDQKPK 222
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPET LF KS ELYGL + + + +++ EGYMDVI L+Q G VA LGTA
Sbjct: 223 YLNSPETVLFQKSRELYGLHQILSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 282
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
++ HI+ + +T +IF FDGD AG++AA RALE L + F+FLP+++DPDS
Sbjct: 283 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 342
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIE-YLFKIIPLSSSL 298
+R G F + + +A L +FF + + + NL + ++ YL K++ S
Sbjct: 343 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMV--EGSY 400
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSS 327
+ +I L+++ + + + NL + S
Sbjct: 401 KQLLIDDLARLTHIESHRLTNLITDKSES 429
>gi|242240772|ref|YP_002988953.1| DNA primase [Dickeya dadantii Ech703]
gi|242132829|gb|ACS87131.1| DNA primase [Dickeya dadantii Ech703]
Length = 584
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 123/368 (33%), Positives = 201/368 (54%), Gaps = 26/368 (7%)
Query: 1 MICASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNI 57
M S FY+ L + A +L KRGL++++I +F +G P+ W N L + +
Sbjct: 120 MAQLSVFYQQTLDQPAGRAAREYLNKRGLSDDVIKQFAIGCTPSGWDNVLKRFGRSSEDR 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+TL +G++V E+ + YDRFR R+MFPI++ G++I FGGR++ D
Sbjct: 180 STLTDAGMLVTN-----------EQGRSYDRFRDRVMFPIRDKRGRVIAFGGRVMGDGT- 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK +LYGL+E++ +L+ EGYMDV+ L+QFG VA LGT
Sbjct: 228 PKYLNSPETEVFHKGRQLYGLYESQQKHPDLKKLLVVEGYMDVVALAQFGVDYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T+ HI+ + T+ ++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD
Sbjct: 288 STTADHIQLLFRATDQVVCCYDGDRAGRDAAWRALETALPYLDDGRQLRFMFLPDGEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ +RK G F +++ +AM L F + ++ ++ T K L +P +
Sbjct: 348 TLVRKEGKAAFEQRIEQAMPLSAFLFDTLLQQVDMSTPDGRAKLSTLALPLISQVP-GET 406
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMK----LLIS 353
LR + L + K+ + + L ++ + + + + QP ++ M+ LL+
Sbjct: 407 LRLYLRQQLGQ--KLGLLDDSQLDRL----MPRISEQASSYQPPRLKVTTMRILIGLLVQ 460
Query: 354 YPSLINEI 361
+P L E+
Sbjct: 461 HPRLSAEV 468
>gi|149910042|ref|ZP_01898690.1| DNA primase [Moritella sp. PE36]
gi|149806910|gb|EDM66871.1| DNA primase [Moritella sp. PE36]
Length = 578
Score = 217 bits (553), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 131/351 (37%), Positives = 199/351 (56%), Gaps = 24/351 (6%)
Query: 7 FYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLAS 62
FY+ QLK N + ++LK+RGL+ E+I ++ +GYA W N L + D + + L +
Sbjct: 125 FYQYQLKEHPNKRVVNDYLKQRGLSAEVIKKYAIGYAAPGWDNVLKRFGRDKHTEDQLLT 184
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+ +I QS +RYDRFR R+MFPI++ G++IG+GGR++ D + KY+N
Sbjct: 185 TGV----LIENEGQS------RRYDRFRERVMFPIRDKRGRVIGYGGRVLGD-EKPKYLN 233
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETP+FHK ELYGL+E + A ++ +++ EGYMDV+ L+QFG VA LGT+ +
Sbjct: 234 SPETPIFHKGKELYGLYEVRQAYKEIPQIVVVEGYMDVVALAQFGIDYAVASLGTSTSGD 293
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
++ + T+ +I +DGD+AGR AA RALE L D K + F+FLPD DPDS +R
Sbjct: 294 QMQTLFRNTSQVICCYDGDKAGRDAAWRALENALPQLRDGKELNFVFLPDGEDPDSLVRH 353
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKY--NIEYLFKIIPLSSSLRF 300
G + EA +L F L+ N+ T+ D +SK ++ L + +P R
Sbjct: 354 QGKDALEQLFKEAQTLPDFLFSR--LSQNIDTLTDAGRSKLASQVKPLIEKMP-DGFYRG 410
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLL 351
++ L++ + ++N LF +SI KK IQ I I LL
Sbjct: 411 IVLKKLARFLGWDEAKLNKLF----TSIATAKPTKKAIQITPIRRAIGLLL 457
>gi|320539900|ref|ZP_08039559.1| putative DNA primase [Serratia symbiotica str. Tucson]
gi|320030086|gb|EFW12106.1| putative DNA primase [Serratia symbiotica str. Tucson]
Length = 582
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 135/454 (29%), Positives = 234/454 (51%), Gaps = 45/454 (9%)
Query: 5 SDFYKIQLKNSKE--AINFLKKRGLNEEIILRFNLGYAPNEWN-ALNKVFLDYNNINTLA 61
S FY+ L A N+L++RGL++++I F +G++P W+ AL + D + + L
Sbjct: 124 SAFYQQSLHQPAGTLARNYLQQRGLSDDVIRHFAIGFSPAGWDIALKRFGRDNDARSALN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V ++ + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIAFGGRVVGDGM-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + VL+ EGYMDV+ L+Q+G VA LGT+ T+
Sbjct: 232 NSPETEIFHKGRQLYGLYEAQQSHPTLQRVLVVEGYMDVVALAQYGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+++I +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 EHIQLLFRATDNVICCYDGDRAGREAAWRALETTLSYLNDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G +F +++ A L F E ++ +L + K + IP S +LR
Sbjct: 352 KEGKTVFEQRMELAQPLSTFLFETLMPQVDLSSPDGRTKLSSLAIPMISQIP-SETLRLY 410
Query: 302 IISSLS---------KIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
+ L ++ K+ ++ N +K T+ ++ LL+
Sbjct: 411 LRQQLGQKLGMPDEFQLEKLLSKQVENASPYQAPQLKRTTMRI-----------LIGLLV 459
Query: 353 SYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK--KINKNF 410
P L I S + + + Q + +F +L+ T + + + + ++ + K+++
Sbjct: 460 QNPRLATLIPSLEGL--EQTKQAGLPLFVELVQTC-LAQPGLTTGQLLELYRDNKLSQQL 516
Query: 411 ESIIVK----IQDNFEYSIEIAKKTLLDAIYKDR 440
E++ + D E + +L D++ + R
Sbjct: 517 ETLATWNHMIVDDRVEQTFLDTLASLYDSVLEQR 550
>gi|332531767|ref|ZP_08407652.1| DNA primase [Pseudoalteromonas haloplanktis ANT/505]
gi|332038743|gb|EGI75185.1| DNA primase [Pseudoalteromonas haloplanktis ANT/505]
Length = 583
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 133/369 (36%), Positives = 206/369 (55%), Gaps = 29/369 (7%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M+ + FY+ QLK NS I ++K RGL+ E + +F +GYAP+EW+ L
Sbjct: 121 MLHTARFYQHQLKHHSNSAAVIEYVKGRGLSGETVKKFMIGYAPSEWDGLCLQL----GR 176
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
N LV K+ ++ ++P +++D FR R+MFPI++ G++I FGGR+++
Sbjct: 177 NKEQKEQLVELKLASE--KTPG----RQFDFFRDRLMFPIRDKRGRVIAFGGRVMQADQG 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+EAK A +K +V+I EGYMDV+ L++ G VA LGT
Sbjct: 231 PKYLNSPETRIFHKGFELYGLYEAKQAHKKLDHVMIVEGYMDVVALAEQGIEYAVASLGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A TS H+ + T+ +I +DGD+AGR AA RALE L Y D K ++F FLPD DPD
Sbjct: 291 ATTSEHMHTLFRTTDKVICCYDGDRAGRDAAWRALENALPYLNDGKALQFAFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL--- 294
S ++K G + F ++ +A + ++ +L D K+K L +PL
Sbjct: 351 SLVQKEGKEQFELRLSQADDFTKVLFNKLSQEVDLTL--DSGKAK----LLSAALPLIEK 404
Query: 295 --SSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
S + I+ L ++I + ++N+ ++ T +H K I P+ Q + +LI
Sbjct: 405 IPSEFYQENILEQLGRLIGRTREQLNS--RLKTPKQQHSIERKFKITPM---RQAIGILI 459
Query: 353 SYPSLINEI 361
+P+L +
Sbjct: 460 QHPNLAKSV 468
>gi|58583751|ref|YP_202767.1| DNA primase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84625564|ref|YP_452936.1| DNA primase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188574976|ref|YP_001911905.1| DNA primase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58428345|gb|AAW77382.1| DNA primase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84369504|dbj|BAE70662.1| DNA primase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188519428|gb|ACD57373.1| DNA primase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 582
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 136/444 (30%), Positives = 221/444 (49%), Gaps = 46/444 (10%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL S+ A ++L RG++ + RF +GYAP+ ++AL + + D ++ L
Sbjct: 120 AATRFFQRQLDGSERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRMSVLE 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA--- 118
+GL +K ++ V YD+FR R+MFPI + G++I FGGR++ +
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDP 228
Query: 119 --KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LG
Sbjct: 229 GPKYLNSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H + + + F FDGD AGR+A RALE L D + FLFLPD DP
Sbjct: 289 TATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS 296
D+ +RK G F +++ +A L QFF +E+ NL T+ + + IP
Sbjct: 349 DTIVRKEGAPAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPMLTQIP--- 405
Query: 297 SLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMK------- 349
+ ++K E++ L + TS+ ++ K P + K
Sbjct: 406 ------EGAFGDLMK---QELSRLTGVGTSASAQQSTPKPR-PPARMAAPTQKRSLVRAS 455
Query: 350 --LLISYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKIN 407
+L+ PSL + E + FS + + +L+D + + +I +++ + +
Sbjct: 456 IAILLQRPSLAASL--EGVHDFSGLRLPGIDLLMELLDLVRQ-RPEISTGALLEHFAERD 512
Query: 408 KNFESIIVKIQ----DNFEYSIEI 427
+ + Q D ++IE+
Sbjct: 513 EQAALQTLAAQELPGDEHSWAIEL 536
>gi|330827380|ref|YP_004390618.1| DNA primase catalytic core domain-containing protein
[Alicycliphilus denitrificans K601]
gi|329312688|gb|AEB87102.1| DNA primase catalytic core domain protein [Alicycliphilus
denitrificans K601]
Length = 328
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/270 (44%), Positives = 163/270 (60%), Gaps = 13/270 (4%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+ FY+ QL+ S A+ +LK RGL +I R+ LGYAP + AL + F +YN
Sbjct: 12 AASFYRGQLRASHRAVAYLKARGLRGDIAARYGLGYAPAGFQALREAFPNYN-------- 63
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
D+ + K V + +RYDRFR RIMFPI + G +IGFGGR++ + + KY+NS
Sbjct: 64 ----DRALEKAGLVAVNDGGRRYDRFRDRIMFPILDDAGSVIGFGGRVL-EGDGPKYLNS 118
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +F K L+GL +A AI +G + EGY+DV+ L+Q G VA LGTA T H
Sbjct: 119 PETEVFQKGRVLFGLTQAAEAIAATGTAYVVEGYLDVVSLAQHGVQNAVATLGTATTGQH 178
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++++L +IF FDGD AGRRAA RAL+VCL + TD + FLFLP +DPDSY+R
Sbjct: 179 VERLLGLAKRVIFCFDGDDAGRRAAARALDVCLPHVTDAADVSFLFLPRDHDPDSYVRAK 238
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLK 273
G F+ LEA SL FFL + L+
Sbjct: 239 GGDAFNDLALEASSLEGFFLASAMQGCQLE 268
>gi|88798841|ref|ZP_01114423.1| DNA primase [Reinekea blandensis MED297]
gi|88778321|gb|EAR09514.1| DNA primase [Reinekea blandensis MED297]
Length = 621
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 167/283 (59%), Gaps = 20/283 (7%)
Query: 1 MICASDFYKIQLKN---SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M +D++ QL ++ +++ RGL E+ + F +G+AP W+ L + F N
Sbjct: 120 MNSCADYFAHQLYQHPYAQGVQDYILGRGLTEDTVHTFQIGFAPPGWDNLIQHFRSENTN 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L G++ ++ YDRFR R+MFPI++ G++I FGGR++ +
Sbjct: 180 RALLKVGMLTQNDNGRI-----------YDRFRNRLMFPIRDIKGRVIAFGGRVMSADEK 228
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK +ELYGL+EA+ A++ ++I EGYMDV+ L+Q G VA LGT
Sbjct: 229 PKYLNSPETPIFHKGHELYGLYEARKALKDFDNIIIVEGYMDVVALAQHGVRNAVATLGT 288
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A + TH++++ T+ I+F FDGD+AGRRAA RAL + D +FLFLPD DPD
Sbjct: 289 ATSETHVQRLFKQTSEIVFCFDGDEAGRRAAIRALTNTMSSLKDGLQARFLFLPDGEDPD 348
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK 280
+ ++K G+ F ++V +A SL F + +L+T DI +
Sbjct: 349 TLVQKEGHDGFMRRVKQAQSLPDFLYQ------HLQTQADISR 385
>gi|52425816|ref|YP_088953.1| DNA primase [Mannheimia succiniciproducens MBEL55E]
gi|52307868|gb|AAU38368.1| DnaG protein [Mannheimia succiniciproducens MBEL55E]
Length = 588
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/270 (42%), Positives = 164/270 (60%), Gaps = 11/270 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
++FY+ QL +S A +L+KRGL+EE+I RF +G+ P+ +NA+ + F T A
Sbjct: 129 AEFYRQQLPHSIPAQAYLQKRGLSEEVIERFAIGFVPDSFNAVLRRF-----GTTKAEQQ 183
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
+ D + N I YDRFR RIMFPI++ G+ I FGGR++ D KY+NSP
Sbjct: 184 KLFDLGMLSRNDRGDI-----YDRFRNRIMFPIRDRRGRTIAFGGRVLTDER-PKYLNSP 237
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK NE+YGL+EA + +L+ EGYMDV+ L+QFG VA LGTA T+ I
Sbjct: 238 ETLTYHKGNEIYGLYEALQINDSPEMLLVVEGYMDVVALAQFGVNYAVASLGTATTAEQI 297
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I + I+ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 298 QLIFRASEQIVCCYDGDRAGREAAWRALENALPYLQDGRQLKFVFLPDGEDPDTYIRQYG 357
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
F + +A+SL F +I +L +
Sbjct: 358 KDAFEDYIQKALSLSDFMFTHLIEQVDLSS 387
>gi|386828954|ref|ZP_10116061.1| DNA primase, catalytic core [Beggiatoa alba B18LD]
gi|386429838|gb|EIJ43666.1| DNA primase, catalytic core [Beggiatoa alba B18LD]
Length = 584
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 203/370 (54%), Gaps = 27/370 (7%)
Query: 1 MICASDFYKIQL--KNSKEAINFLKK-RGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M A +++ QL +EA+ +L++ RGL++ II F LGYAP EW+ L + +
Sbjct: 118 MASALRYFQQQLYAPVGREALAYLQQQRGLSDAIIAEFALGYAPAEWDGLLRAL--SVDK 175
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L +GL+ + E K YDRFR R++FPI + GQ+I FGGR++ DS +
Sbjct: 176 SVLLQAGLLSEH-----------ESGKLYDRFRHRVIFPIYDQRGQVIAFGGRVLDDS-K 223
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKS---GYVLITEGYMDVIGLSQFGFLQTVAI 174
KY+NSPETPLF K ELY + + KS V++ EGYMDV+ L+Q VA
Sbjct: 224 PKYLNSPETPLFSKGKELYHW----DKVRKSRGLKRVVVVEGYMDVVALAQHAVSNAVAT 279
Query: 175 LGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKY 234
LGTA T H++++ + I+F FDGD+AGR+AA RA+E L D + + F FLP
Sbjct: 280 LGTATTPDHLQRLFRSVSDIVFCFDGDEAGRKAAWRAVETVLPLLQDGRQVSFAFLPQAD 339
Query: 235 DPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL 294
DPDS++R+ G F++ + +A+ L QF L + L+TI+ + + L +P
Sbjct: 340 DPDSFVRREGTAAFNQYLDDALPLSQFLLNHLTQQVKLETIEGQARLTELAKPLINQLP- 398
Query: 295 SSSLRFKIISSLSKIIKVSFNEINNLFKIN--TSSIKHKTIEKKNIQPICIEYQIMKLLI 352
+ R + +L K+++V L I T + ++T ++ N + + + Q++ L+
Sbjct: 399 DGAYRDLLTKNLQKLVQVDLKRSTTLRSIGKKTENAFNRTPKQANFKELSLVEQLIVYLM 458
Query: 353 SYPSLINEIN 362
YP I EI
Sbjct: 459 LYPEFIQEIE 468
>gi|152995073|ref|YP_001339908.1| DNA primase [Marinomonas sp. MWYL1]
gi|150835997|gb|ABR69973.1| DNA primase [Marinomonas sp. MWYL1]
Length = 666
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 189/347 (54%), Gaps = 19/347 (5%)
Query: 4 ASDFYKIQL---KNSKEAINFLKK-RGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
+S FY+ QL + K+A ++L K RGL+ +I F LGYAP W N L KV +
Sbjct: 120 SSQFYQQQLTQHPDKKKATDYLSKDRGLSGQIAKVFGLGYAPPGWDNLLKKVGTRAESQE 179
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
L G++++K + YDRFR RI+FPI+++ G++I FGGR D +
Sbjct: 180 QLLLGGMLIEK---------KDQPGHYYDRFRDRIIFPIRDSRGRVIAFGGRAFGD-EKP 229
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+F KS ELYGLFEAK +++ EGYMDVI L+Q G VA LGT+
Sbjct: 230 KYLNSPETPVFQKSQELYGLFEAKQNTPILDQIIVVEGYMDVIVLAQHGITNAVATLGTS 289
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
S HI+K+ + +I FDGD+AGR AA R LE L D+K ++FLFLP+ DPDS
Sbjct: 290 VNSQHIRKLFKLVSKVILCFDGDKAGRAAAIRGLEASLPVMQDEKQVRFLFLPEGEDPDS 349
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSL 298
+RK G + F+ ++ +A SL + L + + N + K IP +
Sbjct: 350 LVRKEGKEAFNHRLEDASSLSHVLFDHARNQVTLGDEEGEAQFARNAMEMIKQIPKELTF 409
Query: 299 RFKIISSLSKIIKVSFNEINN-LFKI---NTSSIKHKTIEKKNIQPI 341
R +I LS + ++N +FK +T S H+ + + Q I
Sbjct: 410 RSVLIRQLSDQSGIDSETLSNTVFKTRRQHTPSEGHEPTHQSHAQQI 456
>gi|94499954|ref|ZP_01306489.1| DNA primase [Bermanella marisrubri]
gi|94427812|gb|EAT12787.1| DNA primase [Oceanobacter sp. RED65]
Length = 661
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 179/302 (59%), Gaps = 25/302 (8%)
Query: 1 MICASDFYKIQLK--NSKEA-INFLKKRGLNEEIILRFNLGYAPNEWNALNKVFL-DYNN 56
M A++FY+ QL+ ++K+A +++LK RGL+ + FN+G+AP W L D +
Sbjct: 120 MGSANEFYQRQLRYHDAKQAAVDYLKNRGLSGKAAKFFNIGFAPPGWQNLQDSLANDDES 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ + ++GL + ++ + YDRFR RI+FPI++ G+ IGFG R + D +
Sbjct: 180 LAAMVTAGLTIKN-----------DQGRHYDRFRNRIIFPIRDVRGRTIGFGARTLGD-D 227
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+F+K ELYGL+E + + LI EGYMDV+ L +FG VA LG
Sbjct: 228 KPKYLNSPETPIFNKGQELYGLYECRQIRQPLKRFLIVEGYMDVVALHEFGIHYAVATLG 287
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + TH++K+ I+F FDGD+AGRRAA+R LE+ L D + I+F+FLP+ DP
Sbjct: 288 TATSDTHLQKLFKIAPEIVFCFDGDEAGRRAAKRGLELVLPIIEDGQQIRFMFLPEGEDP 347
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS 296
DS +RK G F ++ +A L +F L+ T+KD ++E ++ L++
Sbjct: 348 DSLVRKEGKDGFELRMQDADGLSEFLLQ---------TLKDDIDDPASLEGRARLAKLAA 398
Query: 297 SL 298
L
Sbjct: 399 PL 400
>gi|421505677|ref|ZP_15952612.1| DNA primase [Pseudomonas mendocina DLHK]
gi|400343374|gb|EJO91749.1| DNA primase [Pseudomonas mendocina DLHK]
Length = 663
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 183/329 (55%), Gaps = 17/329 (5%)
Query: 3 CASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
A++ Y+ LK+ + A+++LK RGL EI F LG+AP W N L ++ D
Sbjct: 122 AAAEHYRQALKSHPQRKYAVDYLKGRGLTGEIARDFGLGFAPPGWDNLLKQLGGDALQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
L +GL+++ N +RYDRFR RIMFPI+++ G++I FGGR++ D ++
Sbjct: 182 ALIDAGLLIENADNG----------RRYDRFRDRIMFPIRDSRGRVIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPET +FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETAVFHKGQELYGLYEARKHNRDLDEIMVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGD AGR AA RALE L D + +FLFLP+ DPD+
Sbjct: 291 TSEEHLKRLFRIVPSVLFCFDGDAAGRNAAWRALESTLPSLQDGRRARFLFLPEGEDPDT 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F +++ + ++++ L IP ++
Sbjct: 351 LVRAEGTDAFRARINQHAQPLADYFFQQLSEEADPRSLEGKAHLVTLAAPLIDKIP-GNN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTS 326
LR + LS+I +S ++ + S
Sbjct: 410 LRALMRQRLSEITGLSGEALSQVASAPRS 438
>gi|170725516|ref|YP_001759542.1| DNA primase [Shewanella woodyi ATCC 51908]
gi|169810863|gb|ACA85447.1| DNA primase [Shewanella woodyi ATCC 51908]
Length = 575
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/275 (38%), Positives = 166/275 (60%), Gaps = 16/275 (5%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M AS +++ QL+ + ++ +++L RGL+ +++ FN+G+AP+ W+ L + +
Sbjct: 117 MEEASLYFQNQLRQNNDKQKVLDYLAHRGLSNDVVEHFNIGFAPDGWDGLLSRYRQSQDA 176
Query: 58 -NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ L ++G+V++ + KRYDRFR R+MFPI++ G++IGFGGR++ D
Sbjct: 177 QDKLLTAGMVIEN-----------DNGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT 225
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPETP+FHK NELYGL+E K VLI EGYMDV+ L+QFG VA LG
Sbjct: 226 -PKYLNSPETPIFHKGNELYGLYELKQKHRDPQKVLIVEGYMDVVALAQFGVDYAVASLG 284
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
T+ T+ + +L ++ +DGD+AG AA RALE L +KF+FLP+ DP
Sbjct: 285 TSTTADQFQLLLRSAKEVVCCYDGDRAGTEAAWRALETALPLLKPGNQVKFMFLPEGEDP 344
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYN 271
D+ +R+ G ++F ++ EA L +F E + Y
Sbjct: 345 DTMVRQVGKEVFENQIEEAKLLPEFLFETLAAQYG 379
>gi|261855082|ref|YP_003262365.1| DNA primase [Halothiobacillus neapolitanus c2]
gi|261835551|gb|ACX95318.1| DNA primase [Halothiobacillus neapolitanus c2]
Length = 559
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/392 (33%), Positives = 208/392 (53%), Gaps = 34/392 (8%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+ +K QL+ +EAI++LK+RG+N F+LG+APN L + L
Sbjct: 119 MSFANAHFKRQLRAHQEAIDYLKQRGVNGTTAALFDLGFAPNGNLLLGHCESPPKMRDEL 178
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
GL+V K + ++YDRFR RIMFPI++ GQIIGFGGR++ E KY
Sbjct: 179 LELGLIVQK-----------DDGEQYDRFRRRIMFPIRDKRGQIIGFGGRIL-GPGEPKY 226
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPE+ LFHK LYGL+EA+ + V+I EGYMDV+ L+Q G VA +GTA T
Sbjct: 227 LNSPESRLFHKGQNLYGLYEARLDDARPARVIIVEGYMDVVMLAQHGVRNVVATMGTATT 286
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ + ++ S++F FDGD AGRRAA +AL L + TD + ++FLFLPD DPDS+I
Sbjct: 287 DEQTQSLYRFSPSLVFCFDGDAAGRRAATKALHAALPHLTDGRDLRFLFLPDGEDPDSFI 346
Query: 241 RKFGYKIFSKKV-LEAMSLLQFFLEEI-ILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSL 298
+ G F +++ ++S F L+ + + T +KSK +++ + +P
Sbjct: 347 QAKGKSAFIEQIEHHSLSFDNFILQLLDQMEPGQDTAAMAKKSKLGNDWI-RTLP----- 400
Query: 299 RFKIISSLSKIIKVSFNEINNLFKI----NTSSIKHKTIEKKNIQPICIEYQIMKLLISY 354
+L +I + NE +++ NT + T+ + Q + I+ +++ +
Sbjct: 401 ----DGALKRITQRRINEHTGVWRAAYKKNTGPTE-PTLPRNKPQSYAKQTLILSIVLKH 455
Query: 355 PSLINEINSEDMIIFSKCSQNYVKMFFQLIDT 386
P L+ + S+ + FQL+ T
Sbjct: 456 PDLLQRVLEPQAWFNSRVPEG-----FQLLAT 482
>gi|251791057|ref|YP_003005778.1| DNA primase [Dickeya zeae Ech1591]
gi|247539678|gb|ACT08299.1| DNA primase [Dickeya zeae Ech1591]
Length = 584
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 193/361 (53%), Gaps = 20/361 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ LK A +L +RGL++EII +F +G W N L + N TL
Sbjct: 124 SAFYQHTLKQPAGAPAREYLARRGLSDEIIQQFAIGCTLPGWDNVLKRFGRSGENQTTLT 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V E + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------ENGRTYDRFRDRVMFPIRDKRGRVIAFGGRVMGDGT-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 232 NSPETEIFHKGRQLYGLYEAQQKNPELKRLLVVEGYMDVVALAQFGINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+ ++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 DHIQLLFRATDQVVCCYDGDRAGRDAAWRALETALPYLDDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
+ G F +++ +AM L F + ++ ++ T K L +P +LR
Sbjct: 352 QEGKAAFEQRIEQAMPLSAFLFDSLLQQVDMSTPDGRTKLSTLALPLIGQVP-GETLRLY 410
Query: 302 IISSLS-KIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
+ L K+ + ++++ L H + + + I ++ LL+ P L E
Sbjct: 411 LRQQLGHKLGLLDDSQLDRLLPKTAEQTSHYQPPRLKVTTMRI---LIGLLVQNPRLSAE 467
Query: 361 I 361
+
Sbjct: 468 V 468
>gi|85711762|ref|ZP_01042818.1| DNA primase [Idiomarina baltica OS145]
gi|85694377|gb|EAQ32319.1| DNA primase [Idiomarina baltica OS145]
Length = 581
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/368 (32%), Positives = 208/368 (56%), Gaps = 28/368 (7%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M + F++ QLK NS++ I +LK+RGL+ +I+ RF +GYAP+ W++L L +
Sbjct: 122 MAQCTRFFQHQLKHHANSEKVITYLKQRGLSGDIVKRFQIGYAPDAWDSL----LTTMGV 177
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
A L+ K++N V ++ +++D FR R+MFPI + G+++GFGGR+I DS+
Sbjct: 178 EPRARQQLIDLKLVN------VNDQGRKFDFFRDRVMFPIHDRRGRVVGFGGRVI-DSDG 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET LFHK ELYG + + + + + I EGYMDV+ L+Q G VA LGT
Sbjct: 231 PKYLNSPETRLFHKGQELYGFWNMQQRLRRPEQICIVEGYMDVVALAQAGIDYAVASLGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ ++++ +N ++ +DGD+AGR AA RALE L D + FLFLP+ DPD
Sbjct: 291 ATTTEQLQRLFRTSNRVVCCYDGDRAGRDAAWRALENALPLLKDGIDLSFLFLPEGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKD----IEKSKYNIEYLFKIIP 293
S ++ G + F + + +A S + +F E + + ++ T + ++K IE +
Sbjct: 351 SVVQSSGKEGFERYLNQAKSFVDYFFEHLSEDVDVNTESGRSALLSEAKPRIERI----- 405
Query: 294 LSSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
S R ++ L+++++ +++ ++T + + + P+ + + L++
Sbjct: 406 ASDFYRESLMQKLAQLLRRETSQLERY--VDTPQQRKAKPDAVKMTPL---RRAVALIVQ 460
Query: 354 YPSLINEI 361
YP L E+
Sbjct: 461 YPQLAKEV 468
>gi|410623861|ref|ZP_11334671.1| DNA primase [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410156557|dbj|GAC30045.1| DNA primase [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 589
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/277 (39%), Positives = 174/277 (62%), Gaps = 14/277 (5%)
Query: 1 MICASDFYKIQLKN---SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M + +++ QLK+ + E I +LK RGL+ +++ +++G+AP EW+++ K F
Sbjct: 122 MESVTRYFQHQLKHHSQAPEVIEYLKGRGLSGDVVKAWDMGFAPPEWDSVLKTF----GT 177
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ S L+ K+I++ + +R+D FR R+MFPI++ G+++GFGGR+++D
Sbjct: 178 DEHKQSRLLELKLISENDNK------RRFDFFRNRVMFPIRDKRGRVVGFGGRVMQDDG- 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK EL+GL++A+ K +L+ EGYMDV+ LSQF VA LGT
Sbjct: 231 PKYLNSPETPIFHKGFELFGLYQARQNNRKLERLLVVEGYMDVVALSQFDIHYAVAALGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T HI+ + T I+ +DGD+AGR AA RALE L + D +KFLFLPD DPD
Sbjct: 291 ATTPEHIQAMFKSTAEIVCCYDGDRAGREAAWRALENALPFLKDGVGMKFLFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
+ +RK G + F + +A+ L +FF + ++ +++ +
Sbjct: 351 TMVRKIGKEAFEDLLSKAVPLSKFFFDNLLQRHSVGS 387
>gi|307129361|ref|YP_003881377.1| DNA primase [Dickeya dadantii 3937]
gi|306526890|gb|ADM96820.1| DNA primase [Dickeya dadantii 3937]
Length = 584
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 130/393 (33%), Positives = 205/393 (52%), Gaps = 34/393 (8%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ L A +L +RGL++E+I +F +G P W NAL + N TL
Sbjct: 124 SAFYQHTLNQPAGTPAREYLSRRGLSDEVIRQFAIGCTPPGWDNALKRFGRSSENRTTLT 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V + + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------DNGRTYDRFRDRVMFPIRDKRGRVIAFGGRVMGDGM-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 232 NSPETEIFHKGRQLYGLYEAQQKNPELKRLLVVEGYMDVVALAQFGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+ ++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 DHIQLLFRATDQVVCCYDGDRAGRDAAWRALETALPYLDDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
+ G F +++ +AM L F + ++ ++ T K L +P +LR
Sbjct: 352 QEGKAAFEQRIEQAMPLSAFLFDSLLQQVDMSTPDGRAKLSTLALPLIGQVP-GETLRLY 410
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEK-KNIQPICIEYQIMK----LLISYPS 356
+ L N++ L + K E+ + QP ++ M+ LL+ P
Sbjct: 411 LRQQLG-------NKLGLLDDSQLDRLLPKAAEQTSSYQPPRLKVTTMRILIGLLVQNPR 463
Query: 357 LINEINSEDMIIFSKCSQNYV---KMFFQLIDT 386
L E+ + + +N V ++F L+ T
Sbjct: 464 LSAEVPE---LALNGVEENKVAGLELFLDLVKT 493
>gi|348030228|ref|YP_004872914.1| DNA primase [Glaciecola nitratireducens FR1064]
gi|347947571|gb|AEP30921.1| DNA primase [Glaciecola nitratireducens FR1064]
Length = 589
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/277 (39%), Positives = 174/277 (62%), Gaps = 14/277 (5%)
Query: 1 MICASDFYKIQLKN---SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M + +++ QLK+ + E I +LK RGL+ +++ +++G+AP EW+++ K F
Sbjct: 122 MESVTRYFQHQLKHHAQAPEVIEYLKGRGLSGDVVKAWDMGFAPPEWDSVLKTF----GT 177
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ S L+ K+I++ + +R+D FR R+MFPI++ G+++GFGGR+++D
Sbjct: 178 DEHKQSRLLELKLISENDNK------RRFDFFRNRVMFPIRDKRGRVVGFGGRVMQDDG- 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK EL+GL++A+ K +L+ EGYMDV+ LSQF VA LGT
Sbjct: 231 PKYLNSPETPIFHKGFELFGLYQARQNNRKLDRLLVVEGYMDVVALSQFEIDYAVAALGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T HI+ + T I+ +DGD+AGR AA RALE L + D +KFLFLPD DPD
Sbjct: 291 ATTPDHIQAMFKSTPEIVCCYDGDRAGREAAWRALENALPFLKDGVGMKFLFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
+ +RK G + F + +A+ L +FF + ++ +++ +
Sbjct: 351 TMVRKIGKEAFENLLSKAVPLSKFFFDNLLQRHSIAS 387
>gi|344941330|ref|ZP_08780618.1| DNA primase [Methylobacter tundripaludum SV96]
gi|344262522|gb|EGW22793.1| DNA primase [Methylobacter tundripaludum SV96]
Length = 592
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 169/295 (57%), Gaps = 23/295 (7%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M A+ FY QL+ S E A+ +LK RG++ + F LGYAP+EW AL F +
Sbjct: 120 MEQAAAFYAEQLRTSDEGKKAVEYLKNRGVSGDCAGDFMLGYAPDEWKALASRF----DQ 175
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +GL+V K E + YDRFRGRIMFPI++ +IIGFGGR++ DS
Sbjct: 176 KLLLDAGLLVSK-----------ESGQPYDRFRGRIMFPIRDKRARIIGFGGRVLDDSL- 223
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET LFHK E+YGL+E K +LI EGYMDVI L+QFG VA LGT
Sbjct: 224 PKYLNSPETSLFHKGKEVYGLYELLEKNPKPQRILIVEGYMDVIALAQFGIHYAVAALGT 283
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A + H+ + +++ ++F FDGD+AGR AA RA+E D + I+ + LP +DPD
Sbjct: 284 AASQAHLDLLFRFSSELVFCFDGDKAGREAAWRAMESAFSSLKDGRQIRIMLLPQNHDPD 343
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKD----IEKSKYNIEYL 288
S +R+ G F ++ A +L ++F NL ++ + K+K +E L
Sbjct: 344 SLVREEGLDGFIGRMQTAETLSEYFFGHFSNELNLSEMEGRAQLVNKAKPYLEKL 398
>gi|322513555|ref|ZP_08066655.1| DNA primase [Actinobacillus ureae ATCC 25976]
gi|322120626|gb|EFX92520.1| DNA primase [Actinobacillus ureae ATCC 25976]
Length = 580
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 130/389 (33%), Positives = 205/389 (52%), Gaps = 24/389 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
S FY+ L + ++L+ RGL+ EII RF +G+A N ++ L K + + + L +
Sbjct: 127 SQFYQQNLTQDIPSQSYLQSRGLSPEIIARFEIGFAHNSMDSVLRKFGTNRDEVQKLFDT 186
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ ++ YD+FR R+MFPI++ G++I FGGR++ D KY+NS
Sbjct: 187 GMITQNDSGRI-----------YDKFRNRVMFPIRDKRGRVIAFGGRVMGDER-PKYLNS 234
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGLF E +++ EGYMDV+ L+QFG VA LGTA T
Sbjct: 235 PESATYHKGNELYGLFHTLQQNENPTSLVVVEGYMDVVALAQFGVDNVVASLGTATTGEQ 294
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
IK++ T +I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS++R
Sbjct: 295 IKQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDGEDPDSFVRAH 354
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F + AMSL F + +I +L + + K L IP LR +
Sbjct: 355 GKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAVPLINRIP-GEMLRVYLR 413
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISY----PSLIN 359
+ L + K+ + L + S + ++++K +QP+ I+ M+LLI+ P L+
Sbjct: 414 NILGQ--KLGILDPAQLEAMLPSRV--QSVQKLAVQPLQIKRTPMRLLIALLLQNPELVK 469
Query: 360 EINSEDMIIFSKCSQNYVKMFFQLIDTIH 388
+ D+ + ++ +L+D
Sbjct: 470 FV--PDISALKTLDEPGFELLLELVDVCQ 496
>gi|146309041|ref|YP_001189506.1| DNA primase [Pseudomonas mendocina ymp]
gi|145577242|gb|ABP86774.1| DNA primase [Pseudomonas mendocina ymp]
Length = 663
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 183/329 (55%), Gaps = 17/329 (5%)
Query: 3 CASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
A++ Y+ LK+ + A+++LK RGL EI F LG+AP W N L ++ D
Sbjct: 122 AAAEHYRQALKSHPQRKYAVDYLKGRGLTGEIARDFGLGFAPPGWDNLLKQLGGDALQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ N +RYDRFR RIMFPI+++ G++I FGGR++ D ++
Sbjct: 182 AMIDAGLLIENADNG----------RRYDRFRDRIMFPIRDSRGRVIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPET +FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETAVFHKGQELYGLYEARKHNRDLDEIMVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGD AGR AA RALE L D + +FLFLP+ DPD+
Sbjct: 291 TSEEHLKRLFRIVPSVLFCFDGDAAGRNAAWRALESTLPSLQDGRRARFLFLPEGEDPDT 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ A L +F +++ + ++++ L IP ++
Sbjct: 351 LVRAEGTDAFRARINQHAQPLADYFFQQLSEEADPRSLEGKAHLVTLAAPLIDKIP-GNN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFKINTS 326
LR + LS+I +S ++ + S
Sbjct: 410 LRALMRQRLSEITGLSGEALSQVASAPRS 438
>gi|407792574|ref|ZP_11139611.1| DNA primase [Idiomarina xiamenensis 10-D-4]
gi|407217687|gb|EKE87519.1| DNA primase [Idiomarina xiamenensis 10-D-4]
Length = 585
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 123/364 (33%), Positives = 200/364 (54%), Gaps = 33/364 (9%)
Query: 13 KNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLVVDKIIN 72
+NS I++LK RGL+ +I+ +F +GYAP +W+ + F + A + L K+IN
Sbjct: 137 ENSARVIDYLKGRGLSGDIVKQFQIGYAPPQWDGVLSTF----GQKSAARTQLRDLKLIN 192
Query: 73 KVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKS 132
+ +Q + YD FR RIMFPI++ G+++GFGGR++ + + KY+NSPET +FHK
Sbjct: 193 RNDQG------REYDFFRDRIMFPIRDRRGRVVGFGGRIL-EGDGPKYLNSPETRIFHKG 245
Query: 133 NELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTN 192
EL+G +EA+ A + +I EGYMDV+ L+Q G VA LGTA T+ ++ + T+
Sbjct: 246 RELFGFYEARQAHRQLPQAVIVEGYMDVVALAQHGIDYAVASLGTATTTEQLQMLFRATS 305
Query: 193 SIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKV 252
++ +DGD+AGR AA RALE L D + FLFLPD DPDS +R+ G + FS+++
Sbjct: 306 RVVCCYDGDRAGRDAAWRALENALPLLKDGLELAFLFLPDGEDPDSLVRQEGQQKFSQRL 365
Query: 253 LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL-----SSSLRFKIISSLS 307
A S +F +I + ++ D KS L + PL S R ++ L+
Sbjct: 366 QGAQSFTDYFFGHLIDSLDMSLANDAGKSN----LLKQAKPLIERVASEFYRELMLERLA 421
Query: 308 KIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMK----LLISYPSLINEINS 363
+++ +++N+ F + ++ P ++ M+ LL+ YP L I
Sbjct: 422 QLLGRETSQLNSHF---------QRPQQSRYAPQALKMTPMRRAIALLVQYPQLGQAIAV 472
Query: 364 EDMI 367
++ +
Sbjct: 473 QEQL 476
>gi|365972141|ref|YP_004953702.1| DNA primase [Enterobacter cloacae EcWSU1]
gi|365751054|gb|AEW75281.1| DNA primase [Enterobacter cloacae EcWSU1]
Length = 584
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/271 (40%), Positives = 167/271 (61%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKNS--KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ LK++ + A +L RGL++++I RF +GYAP W N L + + + +L +
Sbjct: 129 FYQQSLKHAAAEPARQYLTARGLSDDVIARFAIGYAPPGWDNVLKRFGGNSEDRKSLIDA 188
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ D+ KY+NS
Sbjct: 189 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDA-LPKYLNS 236
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 237 PETDIFHKGRQLYGLYEALKDNAEPPRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 296
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 297 IQLLYRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 356
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ +A L F ++ +L T
Sbjct: 357 GKAAFEARMEQAQPLSTFLFNSLMPQVDLST 387
>gi|384417567|ref|YP_005626927.1| DNA primase [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353460481|gb|AEQ94760.1| DNA primase [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 582
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 135/444 (30%), Positives = 221/444 (49%), Gaps = 46/444 (10%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL+ S+ A ++L RG++ + RF +GYAP+ ++AL + + D ++ L
Sbjct: 120 AATRFFQRQLEGSERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRMSVLE 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA--- 118
+GL +K ++ V YD+FR R+MFPI + G++I FGGR++ +
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDP 228
Query: 119 --KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LG
Sbjct: 229 GPKYLNSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H + + + F FDGD AGR+A RALE L D + FLFLPD DP
Sbjct: 289 TATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS 296
D+ +RK G F +++ +A L QFF +E+ NL T+ + + IP
Sbjct: 349 DTIVRKEGAPAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPMLAQIP--- 405
Query: 297 SLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMK------- 349
+ ++K E++ L + S+ ++ K P + K
Sbjct: 406 ------EGAFGDLMK---QELSRLTGVGASASAQQSAPKPR-PPARMAAPTQKRSLVRAS 455
Query: 350 --LLISYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKIN 407
+L+ PSL + E + FS + + +L+D + + +I +++ + +
Sbjct: 456 IAILLQRPSLAASL--EGVHDFSGLRLPDIDLLMELLDLVRQ-RPEISTGALLEHFAERD 512
Query: 408 KNFESIIVKIQ----DNFEYSIEI 427
+ + Q D ++IE+
Sbjct: 513 EQAALQTLAAQELPGDEHSWAIEL 536
>gi|21233248|ref|NP_639165.1| DNA primase [Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|66770190|ref|YP_244952.1| DNA primase [Xanthomonas campestris pv. campestris str. 8004]
gi|188993401|ref|YP_001905411.1| DNA primase [Xanthomonas campestris pv. campestris str. B100]
gi|21115082|gb|AAM43056.1| DNA primase [Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|66575522|gb|AAY50932.1| DNA primase [Xanthomonas campestris pv. campestris str. 8004]
gi|167735161|emb|CAP53373.1| DNA primase [Xanthomonas campestris pv. campestris]
Length = 582
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 170/297 (57%), Gaps = 17/297 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL+ S A ++L RG++ E RF +GYAP+ ++AL + + D ++ L
Sbjct: 120 AATKFFQRQLEGSDRARDYLDGRGVDAENRARFQIGYAPDGYSALKDTLGTDARRMSVLE 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA--- 118
+GL +K ++ V YD+FR R+MFPI + G++I FGGR++ +
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDP 228
Query: 119 --KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LG
Sbjct: 229 GPKYLNSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H + + + F FDGD AGR+A RALE L D + FLFLPD DP
Sbjct: 289 TATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
D+ +RK G + F ++ +A L QFF +E+ + NL T+ + + + IP
Sbjct: 349 DTIVRKEGAQAFDARLKQATPLSQFFFDEMARDINLHTLDGKARLAERAKPMLAQIP 405
>gi|417673973|ref|ZP_12323415.1| DNA primase [Shigella dysenteriae 155-74]
gi|332086938|gb|EGI92073.1| DNA primase [Shigella dysenteriae 155-74]
Length = 582
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 110/272 (40%), Positives = 166/272 (61%), Gaps = 16/272 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ LK + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLKQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFS-FDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
I+ + F+ DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFPRDQQCHFAVIDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRK 353
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 EGKEAFEARMEQAMPLSAFLFNSLMPQVDLST 385
>gi|410664490|ref|YP_006916861.1| DNA primase [Simiduia agarivorans SA1 = DSM 21679]
gi|409026847|gb|AFU99131.1| DNA primase [Simiduia agarivorans SA1 = DSM 21679]
Length = 655
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 121/277 (43%), Positives = 175/277 (63%), Gaps = 14/277 (5%)
Query: 4 ASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
+++FY+ QLK N A+N+LK RGL +I + +GYAP W L K + + +
Sbjct: 123 SAEFYREQLKTHANKGRAVNYLKGRGLTGKIAGDYLIGYAPPGWENLLKALGEAEDDKRM 182
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
G + +I++ +Q K YDRFR RI+FPI++ G++IGFGGR++ DS KY
Sbjct: 183 LIEGGM---LIHQPDQG------KLYDRFRERIIFPIRDIRGRVIGFGGRVLDDSK-PKY 232
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETP+FHK ELYGL+EA+ A ++ +L+ EGYMDV+ L+QFG VA LGTA
Sbjct: 233 LNSPETPVFHKGKELYGLYEARQAYKEIPRLLVVEGYMDVVSLAQFGICYGVATLGTASG 292
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++ YTN ++F FDGD+AGRRAARRALEV L TD + ++FLFLPD DPD+ +
Sbjct: 293 EDHLELAFKYTNEVVFCFDGDEAGRRAARRALEVALPVMTDGRTVQFLFLPDGEDPDTLV 352
Query: 241 RKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIK 276
R+ G + F K + A+ L + + + +LK ++
Sbjct: 353 RQIGPEKFEKLIASRAIPLEDYLFDAVSTGLDLKRLE 389
>gi|285017225|ref|YP_003374936.1| DNA primase [Xanthomonas albilineans GPE PC73]
gi|283472443|emb|CBA14948.1| probable dna primase protein [Xanthomonas albilineans GPE PC73]
Length = 578
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 125/387 (32%), Positives = 194/387 (50%), Gaps = 20/387 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL S +A +L RG++ E RF +GYAP+ ++AL + + D L
Sbjct: 122 AATKFFQRQLDTSDKARTYLDGRGVDAENRARFQIGYAPDGYSALKDALGTDERRHKLLD 181
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+GL +K ++ V YD+FR R+MFPI + G++I FGGR++ + KY+
Sbjct: 182 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRVLDKDDGPKYL 230
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET LFHK ELYGL++ + + +K +++ EGYMDV+ L QFG Q VA LGTA T
Sbjct: 231 NSPETALFHKGRELYGLWQVRQSNQKIERLIVVEGYMDVVSLFQFGVTQAVATLGTATTP 290
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + + F FDGD AGRRA +ALE L D + FLFLP+ DPD+ +R
Sbjct: 291 EHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPEGEDPDTIVR 350
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G F ++ +A L QFF +E+ NL T+ + + IP +
Sbjct: 351 KEGAAAFDTRLAQATPLSQFFFDELSREINLSTLDGKARLAERARPMLAQIPDGA----- 405
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEI 361
L + I TS+ + ++ + + + L+ P+L E+
Sbjct: 406 -FGDLMRQRLTELTGIGAAAPATTSTSRPPLRPARSAHKRSLVREAIARLLQVPALALEL 464
Query: 362 NSEDMIIFSKCSQNYVKMFFQLIDTIH 388
F+ V++ +L+ +H
Sbjct: 465 TPP--YPFAGLRLPGVELLIELLQIVH 489
>gi|387130958|ref|YP_006293848.1| DNA primase [Methylophaga sp. JAM7]
gi|386272247|gb|AFJ03161.1| DNA primase [Methylophaga sp. JAM7]
Length = 578
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 35/386 (9%)
Query: 4 ASDFYKIQLKNSKEA---INFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
A+ +Y QL++ + +++L++RGL+ EI+ +F++G AP+ W+ L + N + L
Sbjct: 119 ANQYYLHQLQHHPQRQVFLDYLEQRGLSTEIVHQFDIGMAPDGWDNLFRTLASNNETSRL 178
Query: 61 -ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
+G++V +K + YDRFR R+MFPI++ G++IGFGGR+I+ K
Sbjct: 179 LEQAGMLVKN-----------DKGRLYDRFRNRLMFPIRDRRGRVIGFGGRVIEADALPK 227
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+F K +ELYGL++A+ A + +LI EGYMDVI L+Q+G VA LGTA
Sbjct: 228 YLNSPETPIFRKGHELYGLYQARKANRRLDRILIVEGYMDVIALAQYGVTNAVATLGTAT 287
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T H+++++ ++F FDGDQAG AA RA E L + +KF+FLP DPDS
Sbjct: 288 TPDHLRQLIRSAPEVVFCFDGDQAGLDAAWRAAENALPVLGGNFELKFMFLPAGDDPDSL 347
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTI----KDIEKSKYNIEYLFKIIPLS 295
IR+ G F + +A S FFL+ + ++ + IE +K YL +I +
Sbjct: 348 IRREGKAQFETMLNDAQSFSAFFLDHLKQRVGGDSMDARARLIELAK---PYLGRIT--A 402
Query: 296 SSLRFKIISSLSKIIKVSFN----------EINNLFKINTSSIKHKTIEKKNIQPICIEY 345
R + L++ + S + E N K T ++ KT E+ I I ++Y
Sbjct: 403 GVYRDMLAQQLAEQAQTSRHVLNKHLGKSAESNRPAKKKTPTVSQKTPERLAIS-ILLQY 461
Query: 346 QIMKLLISYPSLINEINSEDMIIFSK 371
+ L ++ + ++++ +++ +
Sbjct: 462 PTLHLALTETESLANLSNKGVVVLRQ 487
>gi|386077920|ref|YP_005991445.1| DNA primase DnaG [Pantoea ananatis PA13]
gi|354987101|gb|AER31225.1| DNA primase DnaG [Pantoea ananatis PA13]
Length = 581
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 161/256 (62%), Gaps = 13/256 (5%)
Query: 20 NFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASSGLVVDKIINKVNQSP 78
++L+ RGL+ +II F++GYAP W N L + + +L +G++V
Sbjct: 141 DYLEHRGLSADIINHFSIGYAPAGWDNVLKRFGKQPEDRESLMEAGMLVSN--------- 191
Query: 79 VIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSNELYGL 138
+K + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NSPETP+FHK +LYGL
Sbjct: 192 --DKGRVYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNSPETPVFHKGRQLYGL 248
Query: 139 FEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNSIIFSF 198
+EA + +L+ EGYMDV+ L+QFG VA LGT+ T+ HI+ + T+++I +
Sbjct: 249 YEALKNHPEPKRLLVVEGYMDVVALAQFGVDYAVASLGTSTTAEHIQLLFRSTDNVICCY 308
Query: 199 DGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKVLEAMSL 258
DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R+ G F ++ +AM L
Sbjct: 309 DGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPDTLVRQEGKAAFEARMEQAMPL 368
Query: 259 LQFFLEEIILNYNLKT 274
F + ++ +L +
Sbjct: 369 SSFLFDSLLPQVDLSS 384
>gi|118602331|ref|YP_903546.1| DNA primase [Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
gi|118567270|gb|ABL02075.1| DNA primase [Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
Length = 593
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 201/390 (51%), Gaps = 54/390 (13%)
Query: 7 FYKIQLKNSK---EAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
FY QLK S +A+N+ K RG++ +I F LG+AP N L++ + NI L +
Sbjct: 122 FYIQQLKQSPAKDKAVNYAKNRGISGKIAKYFELGFAPPSSNLLSEFEQNDQNIADLKTM 181
Query: 64 GLVVDKIINKVNQSPVIEKYKR---YDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
GL+ D ++Y+ YD F+ R+MFPI N G II FGGR ++ + KY
Sbjct: 182 GLLCD------------DQYRSGQYYDFFKDRLMFPIHNAKGNIIAFGGRTFDNNTKVKY 229
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETP+F KS ELYGL+ A+ Y+L+ EGYMDVI L Q G Q VA LGTA T
Sbjct: 230 LNSPETPIFSKSKELYGLYHARKYSRSIDYILVVEGYMDVIALHQVGISQVVATLGTATT 289
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H+ + TN+IIF FDGD AG++AA RAL V L +KFLFLPD DPDS +
Sbjct: 290 IEHLNILSRVTNTIIFCFDGDNAGKKAAWRALNVTLPVIKTGITVKFLFLPDGEDPDSLV 349
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
+K K+F ++ A L QF I + TI+ +L K+ L + +
Sbjct: 350 KKESSKVFVTRIENAQPLSQFLFSHIKAELDFSTIEG------KTLFLEKVSTLLRKINY 403
Query: 301 KI-----ISSLSKIIKVSFNEINNLFKINTSSIKHKTIE-KKNIQ--PICIEY------- 345
KI + L+ + S +I + + + ++ T + KN + PI Y
Sbjct: 404 KIYQQQLLEGLAGEVNQSIEQIKYILERQDTPVQINTFDIPKNYEEPPISDFYDSDDNYK 463
Query: 346 ---------------QIMKLLISYPSLINE 360
Q++ LL++YPS+I+E
Sbjct: 464 ALISAPIKSSNSLIDQMIGLLLNYPSMIDE 493
>gi|380511079|ref|ZP_09854486.1| DNA primase, partial [Xanthomonas sacchari NCPPB 4393]
Length = 417
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 165/292 (56%), Gaps = 12/292 (4%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ Q S +A +L RG++ E RF +GYAP+ ++AL + + D + L
Sbjct: 122 AAAKFFQRQFDGSDKARAYLDGRGVDAENRARFQIGYAPDGYSALKDALGTDERRLKLLD 181
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+GL +K ++ V YD+FR R+MFPI + G++I FGGR++ + KY+
Sbjct: 182 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRVLDKDDGPKYL 230
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LGTA T
Sbjct: 231 NSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLGTATTP 290
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + + F FDGD AGRRA +ALE L D + FLFLPD DPD+ +R
Sbjct: 291 DHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPDTIVR 350
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
K G F ++++A L QFF +E+ NL T+ + + IP
Sbjct: 351 KEGAAAFDARLVQATPLSQFFFDELSREINLGTLDGKARLAERARPMLAQIP 402
>gi|417844280|ref|ZP_12490325.1| DNA primase [Haemophilus haemolyticus M21639]
gi|341956911|gb|EGT83326.1| DNA primase [Haemophilus haemolyticus M21639]
Length = 593
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 163/258 (63%), Gaps = 11/258 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 AKFYQSQLSLNTQAQEYLQQRGLSTEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK NELYGL+EA A +K +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGNELYGLYEALQANDKPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFF 262
+ F + + A SL +F
Sbjct: 356 KEKFEEYIESAQSLSEFM 373
>gi|378765639|ref|YP_005194099.1| DNA primase [Pantoea ananatis LMG 5342]
gi|386017212|ref|YP_005935510.1| DNA primase DnaG [Pantoea ananatis AJ13355]
gi|327395292|dbj|BAK12714.1| DNA primase DnaG [Pantoea ananatis AJ13355]
gi|365185112|emb|CCF08062.1| DNA primase [Pantoea ananatis LMG 5342]
Length = 581
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 161/256 (62%), Gaps = 13/256 (5%)
Query: 20 NFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASSGLVVDKIINKVNQSP 78
++L+ RGL+ +II F++GYAP W N L + + +L +G++V
Sbjct: 141 DYLEHRGLSADIINHFSIGYAPAGWDNVLKRFGKQPEDRESLMEAGMLVSN--------- 191
Query: 79 VIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSNELYGL 138
+K + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NSPETP+FHK +LYGL
Sbjct: 192 --DKGRVYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNSPETPVFHKGRQLYGL 248
Query: 139 FEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNSIIFSF 198
+EA + +L+ EGYMDV+ L+QFG VA LGT+ T+ HI+ + T+++I +
Sbjct: 249 YEALKNHPEPKRLLVVEGYMDVVALAQFGVDYAVASLGTSTTAEHIQLLFRSTDNVICCY 308
Query: 199 DGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKVLEAMSL 258
DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R+ G F ++ +AM L
Sbjct: 309 DGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPDTLVRQEGKAAFETRMEQAMPL 368
Query: 259 LQFFLEEIILNYNLKT 274
F + ++ +L +
Sbjct: 369 SSFLFDSLLPQVDLSS 384
>gi|294666748|ref|ZP_06731983.1| DNA primase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292603493|gb|EFF46909.1| DNA primase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 582
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 170/297 (57%), Gaps = 17/297 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL+ S+ A ++L RG++ + RF +GYAP+ ++AL + + D ++ L
Sbjct: 120 AATKFFQRQLEGSERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRMSVLE 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA--- 118
+GL +K ++ V YD+FR R+MFPI + G++I FGGR++ +
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDP 228
Query: 119 --KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LG
Sbjct: 229 GPKYLNSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H + + + F FDGD AGR+A RALE L D + FLFLPD DP
Sbjct: 289 TATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
D+ +RK G + F +++ +A L QFF +E+ NL T+ + L IP
Sbjct: 349 DTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPLLAQIP 405
>gi|390990337|ref|ZP_10260624.1| DNA primase [Xanthomonas axonopodis pv. punicae str. LMG 859]
gi|372554900|emb|CCF67599.1| DNA primase [Xanthomonas axonopodis pv. punicae str. LMG 859]
Length = 582
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 170/297 (57%), Gaps = 17/297 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL+ S+ A ++L RG++ + RF +GYAP+ ++AL + + D ++ L
Sbjct: 120 AATKFFQRQLEGSERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRMSVLE 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA--- 118
+GL +K ++ V YD+FR R+MFPI + G++I FGGR++ +
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDP 228
Query: 119 --KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LG
Sbjct: 229 GPKYLNSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H + + + F FDGD AGR+A RALE L D + FLFLPD DP
Sbjct: 289 TATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
D+ +RK G + F +++ +A L QFF +E+ NL T+ + L IP
Sbjct: 349 DTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPLLAQIP 405
>gi|325928845|ref|ZP_08190012.1| DNA primase [Xanthomonas perforans 91-118]
gi|325540818|gb|EGD12393.1| DNA primase [Xanthomonas perforans 91-118]
Length = 582
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 170/297 (57%), Gaps = 17/297 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL+ S+ A ++L RG++ + RF +GYAP+ ++AL + + D ++ L
Sbjct: 120 AATKFFQRQLEGSERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRMSVLE 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA--- 118
+GL +K ++ V YD+FR R+MFPI + G++I FGGR++ +
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDP 228
Query: 119 --KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LG
Sbjct: 229 GPKYLNSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H + + + F FDGD AGR+A RALE L D + FLFLPD DP
Sbjct: 289 TATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
D+ +RK G + F +++ +A L QFF +E+ NL T+ + L IP
Sbjct: 349 DTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPLLAQIP 405
>gi|386388654|ref|ZP_10073511.1| DNA primase [Haemophilus paraphrohaemolyticus HK411]
gi|385697505|gb|EIG27928.1| DNA primase [Haemophilus paraphrohaemolyticus HK411]
Length = 580
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 110/272 (40%), Positives = 167/272 (61%), Gaps = 14/272 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLASS 63
+ FY+ L+N + N+L+ RGL+ EII +F LG+APN ++A+ K F ++ L +
Sbjct: 127 THFYQQNLQNDILSQNYLQGRGLSPEIIAKFELGFAPNNYDAVLKRFGVNPEETQKLRDT 186
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G+V + E + YD+FR R+MFPI++ G++I FGGR++ D KY+NS
Sbjct: 187 GMVSEN-----------ENGRIYDKFRNRVMFPIRDKRGRVIAFGGRVMGDER-PKYLNS 234
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGL++A A E Y+ + EGYMDV+ L+QF L VA LGTA T
Sbjct: 235 PESATYHKGNELYGLYQALQANENPEYLFVVEGYMDVVALAQFCVLNAVASLGTATTGEQ 294
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+++ T I+ +DGD+AGR AA RA E L Y D + +KF+FLPD DPD+++R
Sbjct: 295 IQQMFRVTEQIVCCYDGDRAGRDAAWRAFENALPYLYDGRQLKFIFLPDGEDPDTFVRSQ 354
Query: 244 GYKIFSKKVLE-AMSLLQFFLEEIILNYNLKT 274
G + F + + E + SL F + +++ +L +
Sbjct: 355 GKEGFEQYLAEHSKSLSDFLFDSLLMQVDLSS 386
>gi|78049550|ref|YP_365725.1| DNA primase [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78037980|emb|CAJ25725.1| DNA primase [Xanthomonas campestris pv. vesicatoria str. 85-10]
Length = 582
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 170/297 (57%), Gaps = 17/297 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL+ S+ A ++L RG++ + RF +GYAP+ ++AL + + D ++ L
Sbjct: 120 AATKFFQRQLEGSERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRMSVLE 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA--- 118
+GL +K ++ V YD+FR R+MFPI + G++I FGGR++ +
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDP 228
Query: 119 --KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LG
Sbjct: 229 GPKYLNSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H + + + F FDGD AGR+A RALE L D + FLFLPD DP
Sbjct: 289 TATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
D+ +RK G + F +++ +A L QFF +E+ NL T+ + L IP
Sbjct: 349 DTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPLLAQIP 405
>gi|127511930|ref|YP_001093127.1| DNA primase [Shewanella loihica PV-4]
gi|126637225|gb|ABO22868.1| DNA primase [Shewanella loihica PV-4]
Length = 601
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 108/272 (39%), Positives = 163/272 (59%), Gaps = 16/272 (5%)
Query: 4 ASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINT 59
AS +++ QLK + ++ +++L RGL++E+I FN+G+AP+ W+ L + + + +
Sbjct: 146 ASRYFQSQLKQHTDKQKVLDYLAHRGLSDEVIEHFNIGFAPDGWDGLLGRYRQNQDAQDK 205
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L ++G+V++ + KRYDRFR R+MFPI++ G++IGFGGR++ D K
Sbjct: 206 LLTAGMVIEN-----------DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT-PK 253
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGL+E K +LI EGYMDV+ L+QFG VA LGT+
Sbjct: 254 YLNSPETPIFHKGYELYGLYELKQRHRDPSQILIVEGYMDVVALTQFGVDYAVASLGTST 313
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T+ + +L +I +DGD+AG AA RALE L +KF+FLP DPDS
Sbjct: 314 TADQFQLLLRSAKEVICCYDGDKAGTEAAWRALETALPLLKPGDQVKFMFLPQGEDPDSL 373
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYN 271
+R+ G F + + EA L +F + + Y
Sbjct: 374 VRQIGKPAFEQLIAEAKLLPEFLFDTLASRYG 405
>gi|346726643|ref|YP_004853312.1| DNA primase [Xanthomonas axonopodis pv. citrumelo F1]
gi|346651390|gb|AEO44014.1| DNA primase [Xanthomonas axonopodis pv. citrumelo F1]
Length = 582
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 170/297 (57%), Gaps = 17/297 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL+ S+ A ++L RG++ + RF +GYAP+ ++AL + + D ++ L
Sbjct: 120 AATKFFQRQLEGSERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRMSVLE 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA--- 118
+GL +K ++ V YD+FR R+MFPI + G++I FGGR++ +
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDP 228
Query: 119 --KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LG
Sbjct: 229 GPKYLNSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H + + + F FDGD AGR+A RALE L D + FLFLPD DP
Sbjct: 289 TATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
D+ +RK G + F +++ +A L QFF +E+ NL T+ + L IP
Sbjct: 349 DTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPLLAQIP 405
>gi|119474864|ref|ZP_01615217.1| DNA primase [marine gamma proteobacterium HTCC2143]
gi|119451067|gb|EAW32300.1| DNA primase [marine gamma proteobacterium HTCC2143]
Length = 611
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 185/323 (57%), Gaps = 16/323 (4%)
Query: 4 ASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINT 59
A+ +Y+ QLK + A+++LK RGL+ EI F++GYAP W N LN + +
Sbjct: 121 AAVYYQQQLKEHPQKQRAVDYLKARGLSGEIARDFDMGYAPPGWDNLLNHLGQSDEDRQL 180
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L G++++K E+ K YDRFR RI+FPI++ G++I FGGR++ D ++ K
Sbjct: 181 LIDGGMLIEKE----------EENKLYDRFRDRIIFPIRDNRGRVIAFGGRVLGD-DKPK 229
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHKS ELYGL++++ A + +L+ EGYMDV+ L+Q G + A LGTA
Sbjct: 230 YLNSPETPVFHKSKELYGLYQSRKANRQLQRLLVVEGYMDVVALAQHGINWSAATLGTAT 289
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
++ H+ ++ +IF FDGD+AGR+AA RAL+ L D + +FLFLP DPDS
Sbjct: 290 STDHLNRVFRQCPEVIFCFDGDEAGRKAAVRALDSALPAMEDGRRARFLFLPQGEDPDSM 349
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
+R G F + V +A L ++ +L ++ + L +P +
Sbjct: 350 VRAIGASNFIRLVEKAEPLEEYLFNAQADGLDLGSLDGRARMSTLAAPLIDKLP-GGVFK 408
Query: 300 FKIISSLSKIIKVSFNEINNLFK 322
++SSL+ +S +++ + +
Sbjct: 409 ELMMSSLADRTGLSLEKLSEILQ 431
>gi|229844309|ref|ZP_04464449.1| DNA primase [Haemophilus influenzae 6P18H1]
gi|229812558|gb|EEP48247.1| DNA primase [Haemophilus influenzae 6P18H1]
Length = 593
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 128/362 (35%), Positives = 199/362 (54%), Gaps = 23/362 (6%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLV 66
FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N L+
Sbjct: 129 FYQNQLPLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKF----GVNREEQQKLI 184
Query: 67 VDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPET 126
++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSPET
Sbjct: 185 ELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSPET 237
Query: 127 PLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKK 186
+HK NELYGL+EA A ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I+
Sbjct: 238 ITYHKGNELYGLYEALQANDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQIQL 297
Query: 187 ILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYK 246
I T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G +
Sbjct: 298 IFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYGKE 357
Query: 247 IFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP---LSSSLRFKII 303
F + + A SL +F + + T + K L IP L SLR +
Sbjct: 358 KFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIPGEMLRLSLRNMLA 417
Query: 304 SSLSKIIKVSFNEI--NNLFKINTSS-IKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
L + + L + NT + H I+K ++ ++ LL+ P L+
Sbjct: 418 QKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPMR------MVISLLLQNPELVKR 471
Query: 361 IN 362
++
Sbjct: 472 MS 473
>gi|417854028|ref|ZP_12499356.1| DNA primase [Pasteurella multocida subsp. multocida str.
Anand1_goat]
gi|338218660|gb|EGP04417.1| DNA primase [Pasteurella multocida subsp. multocida str.
Anand1_goat]
Length = 582
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 140/437 (32%), Positives = 225/437 (51%), Gaps = 39/437 (8%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
+ FY+ QL A ++L++RGL+ E+I RF +G+ PN ++A L + + L
Sbjct: 126 AQFYQQQLAQHIPAQSYLQQRGLSPEVISRFQIGFVPNSFDAVLQRFGQQKEDQQKLFDL 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ E+ K YDRFR RIMFPI++ G+ I FGGR++ D + KY+NS
Sbjct: 186 GMLSRS-----------EQGKIYDRFRHRIMFPIRDRRGRTIAFGGRVLGD-EKPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGL+EA A E +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 234 PESATYHKGNELYGLYEALQANESPEMLLVVEGYMDVVALAQFGVDYAVASLGTATTAEQ 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS+IR+
Sbjct: 294 IQLLFRSTEQAICCYDGDRAGREAAWRAFENALPYLEDGRQLKFVFLPDGEDPDSFIRQH 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F + + +A+SL +F + + + + K L K IP LR +
Sbjct: 354 GKAGFEQYMQKALSLSEFLFTSLAPQVDFSSKEGKTKLAALAVPLIKKIP-GDMLRLSLR 412
Query: 304 SSLSKIIKV-----------SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
++L++ + + S++E+ KI S K + + + ++ + L+
Sbjct: 413 NTLAQKLGILDQAQLESLIPSYSEM----KITASPQPVKRTPMRVLIGLLLQNPELAQLV 468
Query: 353 SYPSLINEINSEDMIIFSK----CSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINK 408
S + +N + + K C + Q+++ + D +HSK ++ L N
Sbjct: 469 PDLSPLRTLNEPGLDLLEKLTALCQEKVGITTGQILE----YWRDTEHSKALEILASWNH 524
Query: 409 NFESIIVKIQDNFEYSI 425
E +I++ F+ ++
Sbjct: 525 LVED--TQIEETFKSTL 539
>gi|119504972|ref|ZP_01627049.1| DNA primase [marine gamma proteobacterium HTCC2080]
gi|119459258|gb|EAW40356.1| DNA primase [marine gamma proteobacterium HTCC2080]
Length = 638
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 167/294 (56%), Gaps = 16/294 (5%)
Query: 4 ASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINT 59
A+ FY+ L+ +K A+ +LK RGL+ EI F +G+AP W N L D I
Sbjct: 122 ATRFYEHSLRKHPEAKRAVAYLKGRGLSGEIARAFRVGFAPPGWDNLLQTADNDAQQIKR 181
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L G++V ++ + YDRFR RI+FPI + G++I FGGR++ D ++ K
Sbjct: 182 LTDGGMLV-----------TNDRGRTYDRFRDRIVFPILDARGRVIAFGGRVLGD-DKPK 229
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHKS ELYGL++A+ + +++ EGYMDVI L+Q+G VA LGTA
Sbjct: 230 YLNSPETPVFHKSRELYGLYQARKSERSLNRIVVVEGYMDVIALAQYGIGYAVATLGTAT 289
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
+ H++++ + ++F FDGD+AGR+AA RALE L D + +FLF+PD DPDS
Sbjct: 290 SEAHMERLFRHVPEVVFCFDGDEAGRKAAFRALESTLPVMQDGRQARFLFVPDGEDPDSL 349
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
+R G + A L +F + + + ++ T+ + +IP
Sbjct: 350 VRARGAEHLEHLFSSATPLEEFLFDWVAKDLDVSTLDGRARFSKQAAPFVHLIP 403
>gi|160871626|ref|ZP_02061758.1| DNA primase [Rickettsiella grylli]
gi|159120425|gb|EDP45763.1| DNA primase [Rickettsiella grylli]
Length = 585
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 133/392 (33%), Positives = 209/392 (53%), Gaps = 28/392 (7%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY + + +K +LK+R L++EI+ +F LGYAP W+ L K F L + G
Sbjct: 122 AQFYANERQQNKTVRYYLKQRNLSDEIMTQFRLGYAPLGWDTLLKAF--KKETERLLTVG 179
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L++ K + YDRFR R++FPI++ G++IGFGGR + E KY+NSP
Sbjct: 180 LLIKKSKGQ----------GYYDRFRDRVLFPIRDRKGRVIGFGGRTVT-QGEPKYLNSP 228
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET LFHK ELYGL+E +L+ EGYMDV+ L Q GF VA LGTA + +
Sbjct: 229 ETLLFHKGKELYGLYEVFQHNRHVERILVVEGYMDVLALFQAGFPFAVATLGTAMSRDQL 288
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+++ +T IIF FDGD AG++AA R LE L TD I +FL LP DPDS+I+K G
Sbjct: 289 SRLMSHTQEIIFCFDGDSAGKKAAWRVLEQSLALLTDGYIFRFLCLPHGEDPDSFIQKKG 348
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK-SKYNIEYLFKIIPLSSSLRFKII 303
F + +A SL +F ++ ++ ++ + +K + + K+ +++K+
Sbjct: 349 ADEFMTFMEQAQSLTEFLFSGLLAQVDITQLEGKARLAKLAVPLIEKVT--QGIMQYKLF 406
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKH--KTIEKKNIQPICI--EYQIMK----LLISYP 355
L++++ + ++ L KI T + H KT++KK I P+ + M+ LLI +P
Sbjct: 407 EQLARLVNI---DVMTLKKITTHTTNHPLKTMQKK-INPVSKVNRFSPMRLAIALLIQFP 462
Query: 356 SLINEINSEDMIIFSKCSQNYVKMFFQLIDTI 387
+ ++ + I + + QL I
Sbjct: 463 HIAQSLSDKQCQILNTLKLPGSDLLVQLFSVI 494
>gi|325920513|ref|ZP_08182438.1| DNA primase [Xanthomonas gardneri ATCC 19865]
gi|325548996|gb|EGD19925.1| DNA primase [Xanthomonas gardneri ATCC 19865]
Length = 584
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 171/297 (57%), Gaps = 17/297 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL+ S+ A ++L RG++ + RF +GYAP+ ++AL + + D ++ L
Sbjct: 120 AATQFFQRQLEGSERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRMSVLE 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA--- 118
+GL +K ++ V YD+FR R+MFPI + G++I FGGR++ +
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDP 228
Query: 119 --KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LG
Sbjct: 229 GPKYLNSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H + + + F FDGD AGR+A RALE L D + FLFLPD DP
Sbjct: 289 TATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
D+ +RK G + F +++ +A L QFF +E+ NL T+ + + + IP
Sbjct: 349 DTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERAKPMLAQIP 405
>gi|15603105|ref|NP_246177.1| DNA primase [Pasteurella multocida subsp. multocida str. Pm70]
gi|18202820|sp|Q9CLI9.1|PRIM_PASMU RecName: Full=DNA primase
gi|12721596|gb|AAK03324.1| DnaG [Pasteurella multocida subsp. multocida str. Pm70]
Length = 582
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 140/437 (32%), Positives = 225/437 (51%), Gaps = 39/437 (8%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
+ FY+ QL A ++L++RGL+ E+I RF +G+ PN ++A L + + L
Sbjct: 126 AQFYQQQLAQHIPAQSYLQQRGLSPEVISRFQIGFVPNSFDAVLQRFGQQKEDQQKLFDL 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ E+ K YDRFR RIMFPI++ G+ I FGGR++ D + KY+NS
Sbjct: 186 GMLSRS-----------EQGKIYDRFRHRIMFPIRDRRGKTIAFGGRVLGD-EKPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGL+EA A E +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 234 PESATYHKGNELYGLYEALQANESPEMLLVVEGYMDVVALAQFGVDYAVASLGTATTAEQ 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS+IR+
Sbjct: 294 IQLLFRSTEQAICCYDGDRAGREAAWRAFENALPYLEDGRQLKFVFLPDGEDPDSFIRQH 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F + + +A+SL +F + + + + K L K IP LR +
Sbjct: 354 GKASFEQYMQKALSLSEFLFTSLAPQVDFSSKEGKTKLAALAVPLIKKIP-GDMLRLSLR 412
Query: 304 SSLSKIIKV-----------SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
++L++ + + S++E+ KI S K + + + ++ + L+
Sbjct: 413 NTLAQKLGILDQAQLESLIPSYSEM----KITASPQPVKRTPMRVLIGLLLQNPELAQLV 468
Query: 353 SYPSLINEINSEDMIIFSK----CSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINK 408
S + +N + + K C + Q+++ + D +HSK ++ L N
Sbjct: 469 PDLSPLRTLNEPGLDLLEKLTALCQEKVGITTGQILE----YWRDTEHSKALEILASWNH 524
Query: 409 NFESIIVKIQDNFEYSI 425
E +I++ F+ ++
Sbjct: 525 LVED--TQIEETFKSTL 539
>gi|378775714|ref|YP_005177957.1| DNA primase [Pasteurella multocida 36950]
gi|383311805|ref|YP_005364615.1| DNA primase [Pasteurella multocida subsp. multocida str. HN06]
gi|386835758|ref|YP_006241078.1| DNA primase [Pasteurella multocida subsp. multocida str. 3480]
gi|421263985|ref|ZP_15714994.1| DNA primase [Pasteurella multocida subsp. multocida str. P52VAC]
gi|425066103|ref|ZP_18469223.1| DNA primase [Pasteurella multocida subsp. gallicida P1059]
gi|356598262|gb|AET16988.1| DNA primase [Pasteurella multocida 36950]
gi|380873077|gb|AFF25444.1| DNA primase [Pasteurella multocida subsp. multocida str. HN06]
gi|385202464|gb|AFI47319.1| DNA primase [Pasteurella multocida subsp. multocida str. 3480]
gi|401688852|gb|EJS84395.1| DNA primase [Pasteurella multocida subsp. multocida str. P52VAC]
gi|404382643|gb|EJZ79103.1| DNA primase [Pasteurella multocida subsp. gallicida P1059]
Length = 582
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 140/437 (32%), Positives = 225/437 (51%), Gaps = 39/437 (8%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
+ FY+ QL A ++L++RGL+ E+I RF +G+ PN ++A L + + L
Sbjct: 126 AQFYQQQLAQHIPAQSYLQQRGLSPEVISRFQIGFVPNSFDAVLQRFGQQKEDQQKLFDL 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ E+ K YDRFR RIMFPI++ G+ I FGGR++ D + KY+NS
Sbjct: 186 GMLSRS-----------EQGKIYDRFRHRIMFPIRDRRGRTIAFGGRVLGD-EKPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGL+EA A E +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 234 PESATYHKGNELYGLYEALQANESPEMLLVVEGYMDVVALAQFGVDYAVASLGTATTAEQ 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS+IR+
Sbjct: 294 IQLLFRSTEQAICCYDGDRAGREAAWRAFENALPYLEDGRQLKFVFLPDGEDPDSFIRQH 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F + + +A+SL +F + + + + K L K IP LR +
Sbjct: 354 GKAGFEQYMQKALSLSEFLFTSLAPQVDFSSKEGKTKLAALAVPLIKKIP-GDMLRLSLR 412
Query: 304 SSLSKIIKV-----------SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
++L++ + + S++E+ KI S K + + + ++ + L+
Sbjct: 413 NTLAQKLGILDQAQLESLIPSYSEM----KITASPQPVKRTPMRVLIGLLLQNPELAQLV 468
Query: 353 SYPSLINEINSEDMIIFSK----CSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINK 408
S + +N + + K C + Q+++ + D +HSK ++ L N
Sbjct: 469 PDLSPLRTLNEPGLDLLEKLTALCQEKVGITTGQILE----YWRDTEHSKALEILASWNH 524
Query: 409 NFESIIVKIQDNFEYSI 425
E +I++ F+ ++
Sbjct: 525 LVED--TQIEETFKSTL 539
>gi|425063933|ref|ZP_18467058.1| DNA primase [Pasteurella multocida subsp. gallicida X73]
gi|404382487|gb|EJZ78948.1| DNA primase [Pasteurella multocida subsp. gallicida X73]
Length = 582
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 140/437 (32%), Positives = 225/437 (51%), Gaps = 39/437 (8%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
+ FY+ QL A ++L++RGL+ E+I RF +G+ PN ++A L + + L
Sbjct: 126 AQFYQQQLAQHIPAQSYLQQRGLSPEVISRFQIGFVPNSFDAVLQRFGQQKEDQQKLFDL 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ E+ K YDRFR RIMFPI++ G+ I FGGR++ D + KY+NS
Sbjct: 186 GMLSRS-----------EQGKIYDRFRHRIMFPIRDRRGRTIAFGGRVLGD-EKPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGL+EA A E +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 234 PESATYHKGNELYGLYEALQANESPEMLLVVEGYMDVVALAQFGVDYAVASLGTATTAEQ 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS+IR+
Sbjct: 294 IQLLFRSTEQAICCYDGDRAGREAAWRAFENALPYLEDGRQLKFVFLPDGEDPDSFIRQH 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F + + +A+SL +F + + + + K L K IP LR +
Sbjct: 354 GKAGFEQYMQKALSLSEFLFTSLAPQVDFSSKEGKTKLAALAVPLIKKIP-GDMLRLSLR 412
Query: 304 SSLSKIIKV-----------SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
++L++ + + S++E+ KI S K + + + ++ + L+
Sbjct: 413 NTLAQKLGILDQAQLESLIPSYSEM----KITASPQPVKRTPMRVLIGLLLQNPELAQLV 468
Query: 353 SYPSLINEINSEDMIIFSK----CSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINK 408
S + +N + + K C + Q+++ + D +HSK ++ L N
Sbjct: 469 PDLSPLRTLNEPGLDLLEKLTALCQEKVGITTGQILE----YWRDTEHSKALEILASWNH 524
Query: 409 NFESIIVKIQDNFEYSI 425
E +I++ F+ ++
Sbjct: 525 LVED--TQIEETFKSTL 539
>gi|381152802|ref|ZP_09864671.1| DNA primase, catalytic core [Methylomicrobium album BG8]
gi|380884774|gb|EIC30651.1| DNA primase, catalytic core [Methylomicrobium album BG8]
Length = 574
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 110/278 (39%), Positives = 162/278 (58%), Gaps = 18/278 (6%)
Query: 1 MICASDFYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN 58
M A+ FY QL K A+++L+ RG++++++ + LGYAP+ W +L+ F N
Sbjct: 122 MEQATAFYTDQLYAKAGAAALDYLRGRGVDDQLMREYRLGYAPDAWQSLSGRF----NSQ 177
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
L +GL V N + YDRFRGR+MFPI++ G+IIGFGGR++ DS
Sbjct: 178 ALLDTGLAVR---NDAGHA--------YDRFRGRVMFPIRDKRGRIIGFGGRVLDDST-P 225
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPET LFHK E+YGL+E K +L+ EGYMDVI L+ G VA LGTA
Sbjct: 226 KYLNSPETSLFHKGREVYGLYELLKKNAKPERILLVEGYMDVIALAGSGIDNAVAALGTA 285
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H + + ++ ++F FDGD+AGR AA RA+E D + ++ + LP+ DPDS
Sbjct: 286 ASQAHAELLFRFSAELVFCFDGDRAGREAAWRAMEAVFPCLKDGRQVRIMLLPEAEDPDS 345
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIK 276
+RK G + F +V E+ L +F +I L +++
Sbjct: 346 LVRKEGVERFQARVRESEVLSDYFFAQIARGLQLSSLE 383
>gi|92113103|ref|YP_573031.1| DNA primase [Chromohalobacter salexigens DSM 3043]
gi|91796193|gb|ABE58332.1| DNA primase [Chromohalobacter salexigens DSM 3043]
Length = 613
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 191/325 (58%), Gaps = 16/325 (4%)
Query: 9 KIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA-SSGLVV 67
++ + +A ++L++RGL+ +I+ F +G+AP++W AL + + + + GL+V
Sbjct: 131 RLAMSEGGDARDYLERRGLSADIVREFGIGFAPDKWEALKRHLTERGISDAVQIEYGLLV 190
Query: 68 DKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETP 127
+ + + YDRFR R+MFPI++ G+ I FGGR++ D+ KY+NSPETP
Sbjct: 191 HRE----------DSGRSYDRFRNRVMFPIRDWKGRTIAFGGRVLGDAK-PKYLNSPETP 239
Query: 128 LFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKI 187
+FHK ELYGL+EA+ A + +L+ EGYMDV+ L+QFG A LGT+ + H++++
Sbjct: 240 VFHKGRELYGLYEARQANARLERMLVVEGYMDVVALAQFGIRNACATLGTSLSEDHLQRL 299
Query: 188 LFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKI 247
++F FDGD+AGR+AARRALE L D + ++FLFLP+ DPDS +R+ G +
Sbjct: 300 FRLVGEVVFCFDGDRAGRQAARRALETVLPSMIDGRQVRFLFLPEGDDPDSLVRREGAEA 359
Query: 248 FSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS--SSLRFKIISS 305
F +VL A L +F ++ +L+ I+D E+ + + +P SL + +S
Sbjct: 360 FENRVLCAAPLSEFLFDQAAEGRDLQRIEDRERFATAVLRALERLPEGVLKSLLLRELSQ 419
Query: 306 LSKIIKVSFNEINNLFKINTSSIKH 330
+ + + +F + L + +TS H
Sbjct: 420 RTGVEQANFQAL--LARADTSQAPH 442
>gi|392308109|ref|ZP_10270643.1| DNA primase [Pseudoalteromonas citrea NCIMB 1889]
Length = 585
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 206/367 (56%), Gaps = 23/367 (6%)
Query: 1 MICASDFYKIQLKNSKEA---INFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M+ + FY+ QLK+ K A I ++K RGL+ E + R+ +GYAP EW +L K I
Sbjct: 120 MLQTAQFYQHQLKHHKNATSVIEYVKGRGLSGETVQRYMMGYAPPEWESLCK------QI 173
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ + ++ ++P +++D FR R+MFPI++ G++I FGGR++
Sbjct: 174 GRTPAHKQQLVELKLASEKTPG----RQFDFFRDRLMFPIRDKRGRVIAFGGRVMGADQG 229
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK ELYGL+EAK A K +LI EGYMDV+ L++ G +VA LGT
Sbjct: 230 PKYLNSPETRIFHKGFELYGLYEAKQANNKLEQILIVEGYMDVVALAEQGISYSVAALGT 289
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ H++ + T+ +I +DGD+AGR AA RALE L D K ++F+FLPD DPD
Sbjct: 290 ATTAEHMQTLFRTTDKVICCYDGDRAGRDAAWRALEHALPNLKDGKSLQFVFLPDGEDPD 349
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
S +++ G + F + A + ++ L D K+K E L I + S
Sbjct: 350 SLVQQEGKEAFEARYDAADDFSKVLFNKLAQTCELTA--DAGKAKLMSEALPLISKVPSE 407
Query: 298 -LRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKK-NIQPICIEYQIMKLLISYP 355
+ ++++L+K+I + +++ T+ + ++IE+K + P+ + + LLI YP
Sbjct: 408 YYQEGLLNTLAKLIGRTREQLSTKL---TTPKQQQSIERKFKVTPM---RRAIGLLIQYP 461
Query: 356 SLINEIN 362
L +I
Sbjct: 462 KLATDIE 468
>gi|157148638|ref|YP_001455957.1| DNA primase [Citrobacter koseri ATCC BAA-895]
gi|157085843|gb|ABV15521.1| hypothetical protein CKO_04465 [Citrobacter koseri ATCC BAA-895]
Length = 581
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 164/254 (64%), Gaps = 15/254 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L + ++ A +L+KRGL+ EI+ RF +G+AP W NAL + + +N L +
Sbjct: 126 FYQQSLAHPTAEPARQYLQKRGLSAEIVQRFAIGFAPPGWDNALKRFGNNSDNRALLLDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V+ ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVNN-----------DQGRTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQHNAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYITDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMS 257
G + F ++ +A+
Sbjct: 354 GKEAFEARMEQALP 367
>gi|344339321|ref|ZP_08770250.1| DNA primase [Thiocapsa marina 5811]
gi|343800625|gb|EGV18570.1| DNA primase [Thiocapsa marina 5811]
Length = 582
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 140/407 (34%), Positives = 216/407 (53%), Gaps = 27/407 (6%)
Query: 4 ASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINT 59
A++ Y+ QL+ + A+ +LK RGL E+ + LG+AP E L +++ +
Sbjct: 120 AAELYREQLRVHPEAPRAVEYLKARGLTGEVAAHYGLGFAPPEGRLLLSRLGASPSERER 179
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L S GL+ D E+ +R DRFR RI+FPI++ G++IGFGGRL+ + + K
Sbjct: 180 LLSCGLIYD------------EEGRRRDRFRDRIIFPIRDRRGRVIGFGGRLLGE-GKPK 226
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK ELYGLFEA+ A K VL+ EGYMDVI L+QFG VA LGTA
Sbjct: 227 YLNSPETPIFHKGRELYGLFEAQKANRKLDAVLVVEGYMDVIALAQFGVTNVVATLGTAT 286
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
TS H+ + ++F FDGD+AGR AA +ALE L AT + I+FLFLPD DPD+
Sbjct: 287 TSEHLALLSRTAPEVVFCFDGDRAGRAAAWKALESALPSATGRQSIRFLFLPDGEDPDTL 346
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
+R G + F ++ A L +F E++ ++ +I + + L +++P R
Sbjct: 347 MRAEGAEAFRARMTRAQPLSEFLFEQLSGQVDMTSIDGRARLAALAQPLIQVVP-PGIYR 405
Query: 300 FKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLIN 359
+ LS + + E + + + + +P I I LL+ +P L
Sbjct: 406 DLLAGRLSALAGIP-QESRPRAPLRGQG-RGRAQAPRPRRPSRIALAIA-LLLDHPELAV 462
Query: 360 EIN--SEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK 404
E+ +D + + + QL++TI + DI+ + I+ +
Sbjct: 463 EVAQLPDD---WRRSPSPGTAILVQLLETI-AAQPDINKAALIERWR 505
>gi|387773887|ref|ZP_10129169.1| DNA primase [Haemophilus parahaemolyticus HK385]
gi|386903379|gb|EIJ68194.1| DNA primase [Haemophilus parahaemolyticus HK385]
Length = 580
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 108/270 (40%), Positives = 167/270 (61%), Gaps = 14/270 (5%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLASSGL 65
FY+ L++ + ++L+ RGL+ EII +F LG+APN ++A+ K F ++ L +G+
Sbjct: 129 FYQHNLQHDIPSQSYLQGRGLSSEIIAKFELGFAPNSYDAVLKRFGVNPEETQKLRDTGM 188
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPE 125
+ + E + YD+FR R+MFPI++ G++I FGGR++ D KY+NSPE
Sbjct: 189 LSEN-----------ENGRIYDKFRNRVMFPIRDKRGRVIAFGGRVMGDER-PKYLNSPE 236
Query: 126 TPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIK 185
+ +HK NELYGL++A A E Y+ + EGYMDV+ L+QFG L VA LGTA T I+
Sbjct: 237 SATYHKGNELYGLYQALQANENPKYLFVVEGYMDVVALAQFGVLNAVASLGTATTGEQIQ 296
Query: 186 KILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGY 245
++ T I+ +DGD+AGR AA RA E L Y D + +KF+FLPD DPD+++R G
Sbjct: 297 QMFRVTEQIVCCYDGDRAGRDAAWRAFENALPYLYDGRQLKFIFLPDGEDPDTFVRSQGK 356
Query: 246 KIFSKKVLE-AMSLLQFFLEEIILNYNLKT 274
+ F + + E + SL F + +++ +L +
Sbjct: 357 EGFEQYLAEHSKSLSDFLFDSLLMQVDLSS 386
>gi|291618942|ref|YP_003521684.1| DnaG [Pantoea ananatis LMG 20103]
gi|291153972|gb|ADD78556.1| DnaG [Pantoea ananatis LMG 20103]
Length = 581
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 161/256 (62%), Gaps = 13/256 (5%)
Query: 20 NFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASSGLVVDKIINKVNQSP 78
++L+ RGL+ +II F++GYAP W N L + + +L +G++V
Sbjct: 141 DYLEHRGLSADIINHFSIGYAPAGWDNVLKRFGKQPEDRESLMEAGVLVSN--------- 191
Query: 79 VIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSNELYGL 138
+K + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NSPETP+FHK +LYGL
Sbjct: 192 --DKGRVYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNSPETPVFHKGRQLYGL 248
Query: 139 FEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNSIIFSF 198
+EA + +L+ EGYMDV+ L+QFG VA LGT+ T+ HI+ + T+++I +
Sbjct: 249 YEALKNHPEPKRLLVVEGYMDVVALAQFGVDYAVASLGTSTTAEHIQLLFRSTDNVICCY 308
Query: 199 DGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKVLEAMSL 258
DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R+ G F ++ +AM L
Sbjct: 309 DGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPDTLVRQEGKAAFETRMEQAMPL 368
Query: 259 LQFFLEEIILNYNLKT 274
F + ++ +L +
Sbjct: 369 SSFLFDSLLPQVDLSS 384
>gi|384426152|ref|YP_005635509.1| DNA primase [Xanthomonas campestris pv. raphani 756C]
gi|341935252|gb|AEL05391.1| DNA primase [Xanthomonas campestris pv. raphani 756C]
Length = 582
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 169/297 (56%), Gaps = 17/297 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL+ S A ++L RG++ E RF +GYAP+ ++AL + + D ++ L
Sbjct: 120 AATKFFQRQLEGSDRARDYLDGRGVDAENRARFQIGYAPDGYSALKDTLGTDARRMSVLE 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA--- 118
+GL +K ++ V YD+FR R+MFPI + G++I FGGR++ +
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDP 228
Query: 119 --KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LG
Sbjct: 229 GPKYLNSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H + + + F FDGD AGR+A RALE L D + FLFLPD DP
Sbjct: 289 TATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
D+ +RK G + F ++ +A L QFF +E+ NL T+ + + + IP
Sbjct: 349 DTIVRKEGAQAFDARLKQATPLSQFFFDEMSREINLHTLDGKARLAERAKPMLAQIP 405
>gi|21244600|ref|NP_644182.1| DNA primase [Xanthomonas axonopodis pv. citri str. 306]
gi|418515590|ref|ZP_13081770.1| DNA primase [Xanthomonas axonopodis pv. malvacearum str. GSPB1386]
gi|418522980|ref|ZP_13089007.1| DNA primase [Xanthomonas axonopodis pv. malvacearum str. GSPB2388]
gi|21110280|gb|AAM38718.1| DNA primase [Xanthomonas axonopodis pv. citri str. 306]
gi|410700455|gb|EKQ59008.1| DNA primase [Xanthomonas axonopodis pv. malvacearum str. GSPB2388]
gi|410707888|gb|EKQ66338.1| DNA primase [Xanthomonas axonopodis pv. malvacearum str. GSPB1386]
Length = 582
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 169/297 (56%), Gaps = 17/297 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL+ S A ++L RG++ + RF +GYAP+ ++AL + + D ++ L
Sbjct: 120 AATKFFQRQLEGSGRARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRMSVLE 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA--- 118
+GL +K ++ V YD+FR R+MFPI + G++I FGGR++ +
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDP 228
Query: 119 --KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LG
Sbjct: 229 GPKYLNSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H + + + F FDGD AGR+A RALE L D + FLFLPD DP
Sbjct: 289 TATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
D+ +RK G + F +++ +A L QFF +E+ NL T+ + L IP
Sbjct: 349 DTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPLLAQIP 405
>gi|421253668|ref|ZP_15708803.1| DNA primase, partial [Pasteurella multocida subsp. multocida str.
Anand1_buffalo]
gi|401693771|gb|EJS87723.1| DNA primase, partial [Pasteurella multocida subsp. multocida str.
Anand1_buffalo]
Length = 514
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 140/437 (32%), Positives = 225/437 (51%), Gaps = 39/437 (8%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
+ FY+ QL A ++L++RGL+ E+I RF +G+ PN ++A L + + L
Sbjct: 58 AQFYQQQLAQHIPAQSYLQQRGLSPEVISRFQIGFVPNSFDAVLQRFGQQKEDQQKLFDL 117
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ E+ K YDRFR RIMFPI++ G+ I FGGR++ D + KY+NS
Sbjct: 118 GMLSRS-----------EQGKIYDRFRHRIMFPIRDRRGRTIAFGGRVLGD-EKPKYLNS 165
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGL+EA A E +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 166 PESATYHKGNELYGLYEALQANESPEMLLVVEGYMDVVALAQFGVDYAVASLGTATTAEQ 225
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS+IR+
Sbjct: 226 IQLLFRSTEQAICCYDGDRAGREAAWRAFENALPYLEDGRQLKFVFLPDGEDPDSFIRQH 285
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F + + +A+SL +F + + + + K L K IP LR +
Sbjct: 286 GKAGFEQYMQKALSLSEFLFTSLAPQVDFSSKEGKTKLAALAVPLIKKIP-GDMLRLSLR 344
Query: 304 SSLSKIIKV-----------SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
++L++ + + S++E+ KI S K + + + ++ + L+
Sbjct: 345 NTLAQKLGILDQAQLESLIPSYSEM----KITASPQPVKRTPMRVLIGLLLQNPELAQLV 400
Query: 353 SYPSLINEINSEDMIIFSK----CSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINK 408
S + +N + + K C + Q+++ + D +HSK ++ L N
Sbjct: 401 PDLSPLRTLNEPGLDLLEKLTALCQEKVGITTGQILE----YWRDTEHSKALEILASWNH 456
Query: 409 NFESIIVKIQDNFEYSI 425
E +I++ F+ ++
Sbjct: 457 LVED--TQIEETFKSTL 471
>gi|392546485|ref|ZP_10293622.1| DNA primase [Pseudoalteromonas rubra ATCC 29570]
Length = 584
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 206/367 (56%), Gaps = 29/367 (7%)
Query: 1 MICASDFYKIQL---KNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M + +Y+ QL + S E ++ RGL+++ I +F +G+AP EW+ L I
Sbjct: 120 MQQTARYYQQQLNQHQKSAEVKAYVTGRGLSQQTIDKFQIGFAPPEWDQL---------I 170
Query: 58 NTLASSGLVVDKIIN---KVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKD 114
TLA + +++ +SP +++D FR R+MFPI++ G++I FGGR++
Sbjct: 171 RTLARNQAQRQQLVELKLATEKSPG----RQFDFFRDRLMFPIRDKRGRVIAFGGRIMGQ 226
Query: 115 SNEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAI 174
KY+NSPET +FHKS ELYG +EAK A + VLI EGYMDV+ LS++G VA
Sbjct: 227 DQGPKYLNSPETRIFHKSFELYGFYEAKQAHRQLAQVLIVEGYMDVVALSEYGIDYAVAA 286
Query: 175 LGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKY 234
LGTA T+ H++ + T+ +I +DGD+AG+ AA RALE L D K ++F+FLPD
Sbjct: 287 LGTATTAEHMQTLFRNTDEVICCYDGDRAGKDAAWRALEHALPNLKDGKSLRFVFLPDGE 346
Query: 235 DPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKI--I 292
DPDS ++K G F +++ EA + + +L T D K+K E L I +
Sbjct: 347 DPDSLVQKEGKDTFEQRLSEAQDYGKVLFARLSEQCDLTT--DAGKAKLLSEALPLIEKV 404
Query: 293 PLSSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
P S + ++++L+++I + +++ K+ T +H K + P+ + + LL+
Sbjct: 405 P-SEYYQESLLTTLARLIGRTREQLSA--KLATPRKQHAIERKFKVTPM---RRAIGLLL 458
Query: 353 SYPSLIN 359
+PSL +
Sbjct: 459 QHPSLAS 465
>gi|417842429|ref|ZP_12488514.1| DNA primase [Haemophilus haemolyticus M21127]
gi|341951641|gb|EGT78203.1| DNA primase [Haemophilus haemolyticus M21127]
Length = 593
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 163/258 (63%), Gaps = 11/258 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 AKFYQSQLPLNTQAQEYLQQRGLSAEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK NELYGL+EA A ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGNELYGLYEALQANDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFF 262
+ F + + A SL +F
Sbjct: 356 KEKFEEYIESAQSLSEFM 373
>gi|422349720|ref|ZP_16430609.1| DNA primase [Sutterella wadsworthensis 2_1_59BFAA]
gi|404657929|gb|EKB30809.1| DNA primase [Sutterella wadsworthensis 2_1_59BFAA]
Length = 762
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/393 (35%), Positives = 211/393 (53%), Gaps = 47/393 (11%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M A+ FY QL+ + A ++LK R ++ +F LGY+P++W+ L +F + + L
Sbjct: 116 MGEAAAFYTEQLRRNAGASDYLKNRCISAATAAKFGLGYSPDDWHPLQTLFGEKYSDRAL 175
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
GLV N N +RYD FRGRIMFPI+N G +IGFG R + + KY
Sbjct: 176 EECGLV-----NVRND-------RRYDAFRGRIMFPIRNAKGLVIGFGARTMNGDEQPKY 223
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETP++HK +ELYG FE + AI G ++ EGYMDVI LSQ GF + VA LGT+ T
Sbjct: 224 LNSPETPIYHKGSELYGYFEGREAIYGKGRAIVCEGYMDVIQLSQAGFEEAVAALGTSIT 283
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
H++K+L T+S+ FSFDGD AGR+AARRALE L TD + F+ LP ++DPDS I
Sbjct: 284 PEHVRKLLKLTDSVYFSFDGDAAGRKAARRALEAALPVITDVQKAGFIILPPEHDPDSLI 343
Query: 241 RKFGYKIFSKKVLEAMSLLQF----FLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS 296
+ G + F +++ +A L F LE L Y + K + ++K + + P+
Sbjct: 344 KAEGAEGFERQIEKAYGLTDFMKKLLLEGKELMYAEERAKLVAEAKPWV-LSMQHAPI-- 400
Query: 297 SLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIE---------------------- 334
LR I L+ I ++ ++I + + ++ + +
Sbjct: 401 -LRLAFIRELAGIARLQADDIERQYGLAGAAPSRPSFDGGRQQGRGGFARRRDDRFPRWP 459
Query: 335 -KKNIQPIC----IEYQIMKLLISYPSLINEIN 362
K +P + ++++ L+SYP L++E +
Sbjct: 460 AKPAPEPRVRVKDVRERMLQCLLSYPHLVSEFS 492
>gi|381170781|ref|ZP_09879935.1| DNA primase [Xanthomonas citri pv. mangiferaeindicae LMG 941]
gi|380688833|emb|CCG36422.1| DNA primase [Xanthomonas citri pv. mangiferaeindicae LMG 941]
Length = 582
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 169/297 (56%), Gaps = 17/297 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL+ S A ++L RG++ + RF +GYAP+ ++AL + + D ++ L
Sbjct: 120 AATKFFQRQLEGSGRARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRMSVLE 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA--- 118
+GL +K ++ V YD+FR R+MFPI + G++I FGGR++ +
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDP 228
Query: 119 --KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LG
Sbjct: 229 GPKYLNSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H + + + F FDGD AGR+A RALE L D + FLFLPD DP
Sbjct: 289 TATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
D+ +RK G + F +++ +A L QFF +E+ NL T+ + L IP
Sbjct: 349 DTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPLLAQIP 405
>gi|223598|prf||0902269A primase dnaG
Length = 580
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/270 (39%), Positives = 164/270 (60%), Gaps = 14/270 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
FY+ L+ + A +L KRGL+ E+I RF L P L + + N +L +G
Sbjct: 126 FYQQSLQQPVATSARQYLDKRGLSHEVIARFGLVLRPPAGQRLKRFGGNPENRQSLIDAG 185
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NSP
Sbjct: 186 MLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNSP 233
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +FHK +LYGL+EA+ + +L+ EGYMDV+ ++Q+G VA LGT+ T+ HI
Sbjct: 234 ETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVAVAQYGINYAVASLGTSTTADHI 293
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK G
Sbjct: 294 QLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEG 353
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
+ F ++ +AM L F ++ +L T
Sbjct: 354 KEAFEARMEQAMPLSAFLFNSLMPQVDLST 383
>gi|387887871|ref|YP_006318169.1| DNA primase [Escherichia blattae DSM 4481]
gi|414594823|ref|ZP_11444456.1| DNA primase [Escherichia blattae NBRC 105725]
gi|386922704|gb|AFJ45658.1| DNA primase [Escherichia blattae DSM 4481]
gi|403194128|dbj|GAB82108.1| DNA primase [Escherichia blattae NBRC 105725]
Length = 581
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 169/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQL--KNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L +++ A +L+KRGL+ EI+ RF +G+AP W NAL + + ++ L +
Sbjct: 126 FYQQALGQPSAQPARAYLEKRGLSPEIVERFAIGFAPPGWDNALKRFGNNNDHRQLLLDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V +V YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVRNDNGRV-----------YDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQHTPEPTRLLVVEGYMDVVALAQYDINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+++I +DGD+AGR AA RALE L Y +D + ++F+FLP+ DPD+ +RK
Sbjct: 294 IQLLFRVTSNVICCYDGDRAGRDAAWRALETALPYMSDGRQLRFMFLPEGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G F ++ EA+ L F ++ +L T
Sbjct: 354 GKAAFEARMDEALPLSTFLFNSLLPQVDLTT 384
>gi|271499151|ref|YP_003332176.1| DNA primase [Dickeya dadantii Ech586]
gi|270342706|gb|ACZ75471.1| DNA primase [Dickeya dadantii Ech586]
Length = 584
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 125/368 (33%), Positives = 200/368 (54%), Gaps = 30/368 (8%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S FY+ L A +L +RGL+++II +F +G W NAL + + ++ TL
Sbjct: 124 SAFYQHTLNQPAGTPAREYLARRGLSDDIIRQFAIGCTLPGWDNALKRFGRNSDDKTTLT 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V E + YDRFR R+MFPI++ G++I FGGR++ D KY+
Sbjct: 184 DAGMLVTN-----------ENGRTYDRFRDRVMFPIRDKRGRVIAFGGRVMGDGT-PKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGT+ T+
Sbjct: 232 NSPETEIFHKGRQLYGLYEAQQKNPELKRLLVVEGYMDVVALAQFGIDYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+ ++ +DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +R
Sbjct: 292 DHIQLLFRATDQVVCCYDGDRAGRDAAWRALETALPYLDDGRQLRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
+ G F +++ +AM L F + ++ ++ T K L +P +LR
Sbjct: 352 QEGKAAFEQRIEQAMPLSSFLFDSLLQQVDMSTPDGRAKLSTLALPLISQVP-GETLRLY 410
Query: 302 IISSLS-KIIKVSFNEINNLFKINTSSIKHKTIEKK-NIQPICIEYQIMK----LLISYP 355
+ L K+ + ++++ L KT E+ + QP ++ M+ LL+ P
Sbjct: 411 LRQQLGHKLGLLDDSQLDRLLP--------KTAEQTLSYQPPRLKVTTMRILIGLLVQNP 462
Query: 356 SLINEINS 363
L E+ +
Sbjct: 463 RLSAEVPT 470
>gi|325918191|ref|ZP_08180340.1| DNA primase [Xanthomonas vesicatoria ATCC 35937]
gi|325535598|gb|EGD07445.1| DNA primase [Xanthomonas vesicatoria ATCC 35937]
Length = 582
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 169/297 (56%), Gaps = 17/297 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL+ S A +L RG++ + RF +GYAP+ ++AL + + D ++ L
Sbjct: 120 AATKFFQRQLEGSTRAAEYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRMSVLE 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA--- 118
+GL +K ++ V YD+FR R+MFPI + G++I FGGR++ +
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDP 228
Query: 119 --KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LG
Sbjct: 229 GPKYLNSPETTLFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H + + + F FDGD AGR+A RALE L D + FLFLPD DP
Sbjct: 289 TATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
D+ +RK G + F +++ +A L QFF +E+ NL T+ + + + IP
Sbjct: 349 DTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERAKPMLAQIP 405
>gi|254362695|ref|ZP_04978781.1| DNA primase [Mannheimia haemolytica PHL213]
gi|452745675|ref|ZP_21945508.1| DNA primase [Mannheimia haemolytica serotype 6 str. H23]
gi|153094316|gb|EDN75177.1| DNA primase [Mannheimia haemolytica PHL213]
gi|452086277|gb|EME02667.1| DNA primase [Mannheimia haemolytica serotype 6 str. H23]
Length = 582
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/277 (39%), Positives = 167/277 (60%), Gaps = 14/277 (5%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINT 59
M + FY+ L + E ++L++RGL+EEII RF +G+APN ++A + F +I
Sbjct: 123 MEAVAKFYQQNLSHQIEPQSYLQQRGLSEEIIERFEIGFAPNAFDAALRTFGQSQEDIQK 182
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIK-DSNEA 118
L +G++ ++ YD+FR R+M PI++ G++I FGGR++ D A
Sbjct: 183 LLDTGVLTKNDSGRI-----------YDKFRNRVMLPIRDKRGRVIAFGGRVLPNDEQGA 231
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPET ++HK +ELYGL++A E Y+ + EGYMDV+ L+QFG VA LGTA
Sbjct: 232 KYMNSPETVIYHKGSELYGLYQALKVNETPDYLFVVEGYMDVVALAQFGVDNAVASLGTA 291
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
T I+++ T I+ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+
Sbjct: 292 TTGEQIQQMFRCTEQIVCCYDGDRAGRDAAWRALENALPYLQDGRQLKFIFLPDGEDPDT 351
Query: 239 YIRKFGYKIFSKKVLE-AMSLLQFFLEEIILNYNLKT 274
++R G + F + V + A L F + ++ + +L +
Sbjct: 352 FVRSQGKEGFEQYVAQNAKPLSDFLFDSLLADVDLSS 388
>gi|114564159|ref|YP_751673.1| DNA primase [Shewanella frigidimarina NCIMB 400]
gi|114335452|gb|ABI72834.1| DNA primase [Shewanella frigidimarina NCIMB 400]
Length = 575
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/272 (38%), Positives = 167/272 (61%), Gaps = 16/272 (5%)
Query: 4 ASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINT 59
A+ FY+ QL+ + ++ +++L+ RGL+ +++ +F +G+AP+ W+ L + + +
Sbjct: 120 ANLFYQSQLRQHTDKQKVVDYLEFRGLSSDVVEQFGIGFAPDGWDGLLGRYRQNLPAQDK 179
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L ++G+++ N S KRYDRFR R+MFPI++ G+++GFGGR++ D K
Sbjct: 180 LLTAGMLI------ANDS-----GKRYDRFRDRLMFPIRDRRGRVVGFGGRVLGDGT-PK 227
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK NELYGL+E K +VLI EGYMDV+ L+QFG VA LGT+
Sbjct: 228 YLNSPETPIFHKGNELYGLYELKQKHRDPQHVLIVEGYMDVVALAQFGIDYAVASLGTST 287
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T+ + ++ ++ +DGD+AGR AA RALE L +KF+FLP DPD+
Sbjct: 288 TAEQFQLLVRSAKQVVCCYDGDRAGREAAWRALETALPLLKPGDQVKFMFLPQGEDPDTM 347
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYN 271
+RK G + F + +AM L +F + + N+
Sbjct: 348 VRKIGKEAFEALMQKAMLLPEFLFDTLSANHG 379
>gi|53802940|ref|YP_115382.1| DNA primase [Methylococcus capsulatus str. Bath]
gi|53756701|gb|AAU90992.1| DNA primase [Methylococcus capsulatus str. Bath]
Length = 571
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/370 (33%), Positives = 191/370 (51%), Gaps = 38/370 (10%)
Query: 4 ASDFYKIQLKNSKEAIN---FLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
A+ FY QL++ +A +L+KRGL EI R+ LGYAP WN+L D+ L
Sbjct: 122 AAGFYIQQLRDHPDAGQAKIYLRKRGLTGEIARRYRLGYAPPGWNSLPA---DWPR-TLL 177
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SGLV++K YDRFR RIMFPI++ G++IGFGGR + D + KY
Sbjct: 178 IQSGLVIEK------------GRSCYDRFRHRIMFPIRDRRGRVIGFGGRTLGD-DTPKY 224
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPET +F K ELYGL E + + +L+ EGY+DVI L+Q G VA LGT+ +
Sbjct: 225 LNSPETEVFRKGKELYGLHELLESTPRPRRILVVEGYLDVIALAQHGINDAVATLGTSTS 284
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ H+ + +T I+F FDGD AG +AA RALE L + + I+F+ LP DPDS I
Sbjct: 285 AEHVHLLFRFTREIVFCFDGDAAGHKAAWRALEASLPLLQEGREIRFIHLPAGEDPDSLI 344
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
RK G + F ++ +A + + + +L++I+ + L +P
Sbjct: 345 RKEGREAFESRIGQASPFSDYLFRTLQKDLDLRSIEGRATLQKQARELLDRLP------- 397
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKK------NIQPICIEYQIMKLLISY 354
+ + +++ +E + +S K++E + ++P ++ LL+
Sbjct: 398 --VGAFRTLMEQRLSEFTGVAPPAPAS---KSLENRLGHPSGQVRPPSAWRNVVTLLLHR 452
Query: 355 PSLINEINSE 364
P L I+ E
Sbjct: 453 PRLAKLISPE 462
>gi|389808590|ref|ZP_10204825.1| DNA primase [Rhodanobacter thiooxydans LCS2]
gi|388442678|gb|EIL98859.1| DNA primase [Rhodanobacter thiooxydans LCS2]
Length = 596
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/379 (31%), Positives = 191/379 (50%), Gaps = 46/379 (12%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDY-NNINTLASSGL 65
+Y+ +L S EA + +KRGL+ E I RF LG+AP ++ + K + + L +G+
Sbjct: 124 WYQGELPRSAEAQAYCRKRGLDGETIKRFRLGWAPAGYDGVIKALGNTPRRMELLNEAGM 183
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA------- 118
V E+ +YDRFR R+MFPI + G++I FGGR+I + A
Sbjct: 184 VASN-----------ERGSKYDRFRERLMFPILDRRGRVIAFGGRIISSAPPAREDQEAG 232
Query: 119 -----------KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFG 167
KY+NSPETPLFHK EL+ L++ K A K +++ EGYMDVI L Q G
Sbjct: 233 IPARTPEKSSPKYLNSPETPLFHKGRELFALWQVKQANPKLERIVVVEGYMDVIALHQAG 292
Query: 168 FLQTVAILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKF 227
VA LGTA T H + + ++F FDGD+AGR AA +ALE L D + F
Sbjct: 293 LPIAVATLGTATTPEHTEVLFRAAPDVVFCFDGDRAGRAAAWKALESALPRLRDGRQAYF 352
Query: 228 LFLPDKYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEY 287
LFLPD DPD+ +RK G + F +++ EAM L +F E+ + ++ ++ +
Sbjct: 353 LFLPDGEDPDTLVRKEGREGFERRIREAMPLSDYFFNELARDVDMASLDGRARLAERARP 412
Query: 288 LFKIIPLSSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQI 347
L +P + R + L K + + + H+ +++ P ++ +
Sbjct: 413 LIAKLP-DGAFRDLMAQELEK--RSGARAV-----LQADPATHRAMQR----PTAVQRSL 460
Query: 348 MK----LLISYPSLINEIN 362
++ LL++ P + +++
Sbjct: 461 VRSAISLLLAQPGMADQVE 479
>gi|223041545|ref|ZP_03611746.1| DNA primase [Actinobacillus minor 202]
gi|223017640|gb|EEF16050.1| DNA primase [Actinobacillus minor 202]
Length = 581
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 164/272 (60%), Gaps = 14/272 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
+ FY+ L+ + ++L++RGL+ EII RF +G+APN ++A L K + I L +
Sbjct: 128 TQFYQQNLQQDIPSQSYLQQRGLSSEIIARFEIGFAPNAYDAVLRKFGKNPEEIQKLRDT 187
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ + ++ YD+FR RIMFPI++ G++I FGGR++ D KY+NS
Sbjct: 188 GMLSESESGRI-----------YDKFRNRIMFPIRDKRGRVIAFGGRVMGDER-PKYLNS 235
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGL++A E Y+ + EGYMDV+ L+QFG VA LGTA T
Sbjct: 236 PESATYHKGNELYGLYQALQVDENPQYLFVVEGYMDVVALAQFGVENAVASLGTATTGEQ 295
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+++ T II +DGD+AGR AA RA E L Y D + +KF+FLPD DPD+++R
Sbjct: 296 IQQMFRVTEQIICCYDGDRAGRDAAWRAFENALPYLYDGRQLKFIFLPDGEDPDTFVRSQ 355
Query: 244 GYKIFSKKVLE-AMSLLQFFLEEIILNYNLKT 274
G F + + E A SL F + +++ +L +
Sbjct: 356 GKSGFEQYLQENAKSLSDFLFDSLLVQVDLSS 387
>gi|419838519|ref|ZP_14361944.1| DNA primase [Haemophilus haemolyticus HK386]
gi|386910284|gb|EIJ74941.1| DNA primase [Haemophilus haemolyticus HK386]
Length = 593
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/262 (41%), Positives = 165/262 (62%), Gaps = 11/262 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M+ + FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 123 MLEIAKFYQSQLPLNAQAQGYLQQRGLSPEIIERFQIGFVPNAMDTVLRKF----GVNRE 178
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY
Sbjct: 179 EQQKLIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKY 231
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPET +HK NELYGL+EA A ++ +L+ EGYMDV+ L+QFG VA LGT+ T
Sbjct: 232 LNSPETITYHKGNELYGLYEALQANDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTT 291
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
S I+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLP+ DPD+YI
Sbjct: 292 SEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPEGEDPDTYI 351
Query: 241 RKFGYKIFSKKVLEAMSLLQFF 262
R++G + F + + A SL +F
Sbjct: 352 RQYGKEKFEEYIESAQSLSEFM 373
>gi|145633516|ref|ZP_01789245.1| DNA primase [Haemophilus influenzae 3655]
gi|144985885|gb|EDJ92493.1| DNA primase [Haemophilus influenzae 3655]
Length = 593
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 198/367 (53%), Gaps = 33/367 (8%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLV 66
FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N L+
Sbjct: 129 FYQSQLPLNTQAQEYLQQRGLSAEIIKRFQIGFVPNAMDTVLRKF----GVNREEQQKLI 184
Query: 67 VDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPET 126
++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSPET
Sbjct: 185 ELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSPET 237
Query: 127 PLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKK 186
+HK NELYGL+EA A ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I+
Sbjct: 238 ITYHKGNELYGLYEALQANDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQIQL 297
Query: 187 ILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYK 246
+ T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G +
Sbjct: 298 MFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYGKE 357
Query: 247 IFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP---LSSSLRFKII 303
F + + A SL +F + + T + K L + IP L SLR +
Sbjct: 358 KFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIRQIPGEMLRLSLRNMLA 417
Query: 304 --------SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYP 355
+ L +I + N K+ + IK + ++ LL+ P
Sbjct: 418 QKLGIFDQTQLENLIPKQLEQANTQQKVANNKIKKTPMR-----------MVISLLLQNP 466
Query: 356 SLINEIN 362
L+ ++
Sbjct: 467 ELVKRMS 473
>gi|400406352|ref|YP_006589100.1| DNA primase, catalytic core [secondary endosymbiont of Heteropsylla
cubana]
gi|400364605|gb|AFP85672.1| DNA primase, catalytic core [secondary endosymbiont of Heteropsylla
cubana]
Length = 583
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/352 (35%), Positives = 203/352 (57%), Gaps = 21/352 (5%)
Query: 5 SDFYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTLA 61
+ FY+ +Q + + +A ++LK+RG++E+II F++GYAP WN L K F+ + + L
Sbjct: 124 NQFYQQSLQTQTASDARHYLKQRGISEKIINYFSIGYAPPGWNNLYKHFICLGEDKDLLQ 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V +N + YDRFR RIMFPI++ G++I FGGR+ + + KY+
Sbjct: 184 HTGMLV---VNHHGHT--------YDRFRNRIMFPIRDKRGRVIAFGGRIFDKTRQPKYL 232
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NS E+ +FHK +ELYGL+E + +K +L+ EGY+DV+ L+QFG VA+LGT+ T
Sbjct: 233 NSTESDIFHKGHELYGLYETQQKNQKLSRLLVVEGYIDVVSLTQFGINYAVALLGTSTTK 292
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+ +I +DGD+AG++AA RAL+ L TD + ++F+FLP DPD+ +R
Sbjct: 293 EHIQLLYRVTDQVICCYDGDEAGQKAAWRALKYALPSLTDGRQLRFMFLPRGEDPDTLVR 352
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G F + + +A SL F E ++ +L + + K L K +P ++LR
Sbjct: 353 KIGKNAFQQYIEKAKSLSTFLFETLMRQIDLSSQEGRAKLSTLALPLIKQVP-GNTLRLY 411
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
+ L K+ + L K+ S TI+ N Q I+ M+ LI+
Sbjct: 412 LRQQLG--YKLGILDDARLEKLLPKS----TIQVNNFQQPKIKRTTMRTLIA 457
>gi|374261643|ref|ZP_09620221.1| DNA primase DnaG [Legionella drancourtii LLAP12]
gi|363537737|gb|EHL31153.1| DNA primase DnaG [Legionella drancourtii LLAP12]
Length = 503
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/268 (41%), Positives = 162/268 (60%), Gaps = 14/268 (5%)
Query: 7 FYKIQLKNSKE-AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGL 65
+Y+ QLK+ + AIN+L+ RGL+ +I + LGYA W+ L K F N L ++G+
Sbjct: 48 YYQKQLKHEGQLAINYLRGRGLSGDIAKLYQLGYANEGWHNLEKAF--PRNQRDLITTGM 105
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPE 125
++ K+ YDR+R R+MFPI + G+IIGFGGR++ + KY+NSPE
Sbjct: 106 LIKNDEGKI-----------YDRYRNRVMFPIHDRHGRIIGFGGRVLSADQKPKYLNSPE 154
Query: 126 TPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIK 185
T +F KS ELYGL + + + Y++I EGYMDVI L+Q G + VA LGTA ++ HI+
Sbjct: 155 TVIFQKSRELYGLHQILSQKKSPEYIIIVEGYMDVIALAQHGIMNAVATLGTATSTYHIQ 214
Query: 186 KILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGY 245
+ +T ++ F FDGD AGR+AA R LE L F+FLPD +DPDS +R G
Sbjct: 215 LLAKHTKALFFCFDGDNAGRQAAWRGLESSLPQLHQGLDASFMFLPDGHDPDSLVRAEGK 274
Query: 246 KIFSKKVLEAMSLLQFFLEEIILNYNLK 273
+ F ++ +A L +FFL+ + + NL+
Sbjct: 275 ENFLNRLKQATPLHRFFLDTLAKDINLR 302
>gi|261492896|ref|ZP_05989442.1| DNA primase [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261496754|ref|ZP_05993129.1| DNA primase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261307593|gb|EEY08921.1| DNA primase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261311437|gb|EEY12594.1| DNA primase [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 582
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/277 (39%), Positives = 167/277 (60%), Gaps = 14/277 (5%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINT 59
M + FY+ L + E ++L++RGL+ EII RF +G+APN ++A + F +I
Sbjct: 123 MEAVAKFYQQNLSHQIEPQSYLQQRGLSPEIIERFEIGFAPNAFDAALRTFGQSQEDIQK 182
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIK-DSNEA 118
L +G++ ++ YD+FR R+MFPI++ G++I FGGR++ D A
Sbjct: 183 LLDTGVLTKNDSGRI-----------YDKFRNRVMFPIRDKRGRVIAFGGRVLPNDEQGA 231
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPET ++HK +ELYGL++A E Y+ + EGYMDV+ L+QFG VA LGTA
Sbjct: 232 KYMNSPETVIYHKGSELYGLYQALKVNETPDYLFVVEGYMDVVALAQFGVDNAVASLGTA 291
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
T I+++ T I+ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+
Sbjct: 292 TTGEQIQQMFRCTEQIVCCYDGDRAGRDAAWRALENALPYLQDGRQLKFIFLPDGEDPDT 351
Query: 239 YIRKFGYKIFSKKVLE-AMSLLQFFLEEIILNYNLKT 274
++R G + F + V + A L F + ++ + +L +
Sbjct: 352 FVRSQGKEGFEQYVAQNAKPLNDFLFDSLLADVDLSS 388
>gi|299771333|ref|YP_003733359.1| DNA primase [Acinetobacter oleivorans DR1]
gi|298701421|gb|ADI91986.1| DNA primase [Acinetobacter oleivorans DR1]
Length = 624
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 192/354 (54%), Gaps = 26/354 (7%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL NS++A N+ K+RGL + I + LGYAP +W L K F +I+ L G
Sbjct: 175 AQFYEHQLPNSQKAKNYFKQRGLTNQTIQFWRLGYAPEDWQHLEKAFP--YDIDGLKQLG 232
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 233 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 281
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + KS L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 282 DSEVFHKNQLLYGLYEGRKL--KSSDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 339
Query: 185 KKILFYTNS-IIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
ILF NS I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+
Sbjct: 340 -NILFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRRE 398
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F K + +A L F + +++ T + + L +++P S R+
Sbjct: 399 GLENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY--- 455
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T + H NIQ ++ + +L+ +P L
Sbjct: 456 -----LLNQSFREKLGLGKRFTPQVSHDASLSFNIQTKDEDFAVA-ILMHHPFL 503
>gi|422337066|ref|ZP_16418038.1| DNA primase [Aggregatibacter aphrophilus F0387]
gi|353345618|gb|EHB89909.1| DNA primase [Aggregatibacter aphrophilus F0387]
Length = 592
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 131/350 (37%), Positives = 195/350 (55%), Gaps = 18/350 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + A ++L++RGL+ EII RF +GY PN A++ V+ + T
Sbjct: 128 AKFYQQQLPLNIPAQSYLQQRGLSAEIIERFQIGYVPN---AMDTVYRQFGK--TREEQQ 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
+ D + N I YDRFR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 KLFDLGMLSRNDRGNI-----YDRFRNRIMFPIRDRRGRTVAFGGRVLTDE-KPKYLNSP 236
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK +ELYGLFEA A + +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 237 ETVTYHKGSELYGLFEALQADDSPQKLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 296
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + T +I +DGD+AGR AA RALE L Y D + +KF+FLPD DPD++IR+FG
Sbjct: 297 QLLFRSTEQVICCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTFIRQFG 356
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + A SL +F + + + + K L K IP LR + +
Sbjct: 357 KEGFEEYLNNAQSLSEFLFAHLTPQVDFSSKEGKNKLAALAIPLIKQIP-GDVLRLDLRN 415
Query: 305 SLSKIIKV-SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
+L+K + + ++ +L + KT QPI + M++LI+
Sbjct: 416 TLAKKLGILDSTQLESLI-----PNQQKTENTPTAQPIQFKRTPMRVLIA 460
>gi|251793983|ref|YP_003008715.1| DNA primase [Aggregatibacter aphrophilus NJ8700]
gi|247535382|gb|ACS98628.1| DNA primase [Aggregatibacter aphrophilus NJ8700]
Length = 598
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 131/350 (37%), Positives = 195/350 (55%), Gaps = 18/350 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + A ++L++RGL+ EII RF +GY PN A++ V+ + T
Sbjct: 128 AKFYQQQLPLNIPAQSYLQQRGLSAEIIERFQIGYVPN---AMDTVYRQFGK--TREEQQ 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
+ D + N I YDRFR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 KLFDLGMLSRNDRGNI-----YDRFRNRIMFPIRDRRGRTVAFGGRVLTDE-KPKYLNSP 236
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK +ELYGLFEA A + +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 237 ETVTYHKGSELYGLFEALQADDSPQKLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 296
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + T +I +DGD+AGR AA RALE L Y D + +KF+FLPD DPD++IR+FG
Sbjct: 297 QLLFRSTEQVICCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTFIRQFG 356
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + A SL +F + + + + K L K IP LR + +
Sbjct: 357 KEGFEEYLNNAQSLSEFLFAHLTPQVDFSSKEGKNKLAALAIPLIKQIP-GDVLRLDLRN 415
Query: 305 SLSKIIKV-SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
+L+K + + ++ +L + KT QPI + M++LI+
Sbjct: 416 TLAKKLGILDSTQLESLI-----PNQQKTENTPTAQPIQFKRTPMRVLIA 460
>gi|378578672|ref|ZP_09827347.1| DNA primase [Pantoea stewartii subsp. stewartii DC283]
gi|377818952|gb|EHU02033.1| DNA primase [Pantoea stewartii subsp. stewartii DC283]
Length = 581
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 159/256 (62%), Gaps = 13/256 (5%)
Query: 20 NFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASSGLVVDKIINKVNQSP 78
++L+ RGL+ +II F +GYAP W N L + + +L +G++V
Sbjct: 141 DYLQHRGLSADIINHFAIGYAPAGWDNVLKRFGKQPEDRESLMEAGMLVSN--------- 191
Query: 79 VIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSNELYGL 138
+K + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NSPETP+FHK +LYGL
Sbjct: 192 --DKGRVYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNSPETPVFHKGRQLYGL 248
Query: 139 FEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNSIIFSF 198
+EA + +L+ EGYMDV+ L+Q+G VA LGT+ T+ HI+ + T+++I +
Sbjct: 249 YEALKNHPEPKRLLVVEGYMDVVALAQYGVDYAVASLGTSTTAEHIQLLFRSTDNVICCY 308
Query: 199 DGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKVLEAMSL 258
DGD+AGR AA RALE L Y D + ++F+FLPD DPD+ +RK G F ++ +AM
Sbjct: 309 DGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDPDTLVRKEGKAAFEARMEQAMPF 368
Query: 259 LQFFLEEIILNYNLKT 274
F + ++ +L +
Sbjct: 369 SSFLFDSLLPQVDLSS 384
>gi|145640510|ref|ZP_01796094.1| DNA primase [Haemophilus influenzae R3021]
gi|145275096|gb|EDK14958.1| DNA primase [Haemophilus influenzae 22.4-21]
Length = 593
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 127/364 (34%), Positives = 199/364 (54%), Gaps = 23/364 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 AKFYQNQLPLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK ELYGL+EA A ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGKELYGLYEALQANDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP---LSSSLRFK 301
+ F + + A SL +F + + T + K L IP L SLR
Sbjct: 356 KEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIPGEMLRLSLRNM 415
Query: 302 IISSLSKIIKVSFNEI--NNLFKINTSS-IKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+ L + + L + NT + H I+K ++ ++ LL+ P L+
Sbjct: 416 LAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPMR------MVISLLLQNPELV 469
Query: 359 NEIN 362
++
Sbjct: 470 KRMS 473
>gi|339477925|ref|YP_004706745.1| putative DNA primase [Candidatus Moranella endobia PCIT]
gi|338172476|gb|AEI74877.1| putative DNA primase [Candidatus Moranella endobia PCIT]
Length = 582
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 178/307 (57%), Gaps = 18/307 (5%)
Query: 5 SDFYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
S+FY+ +Q K + +A +L+ RGLNE I F +G+AP W N + + + L
Sbjct: 124 SEFYQQVLQSKTANKANQYLQHRGLNEAITKSFAIGFAPPGWYNVIKRFGNSSQDRADLN 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKR-YDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+G++V + Y R YDRFR RIMFPI++ G+++ FGGR++ D+ + KY
Sbjct: 184 DAGMLV------------VNDYGRTYDRFRERIMFPIRDKRGRVVAFGGRIL-DNGQPKY 230
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
INSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+QFG VA LGTA T
Sbjct: 231 INSPETVIFHKGRQLYGLYEAQRQNMQLLRLLVVEGYMDVVALAQFGIDYAVASLGTAIT 290
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ HI+ + T+ +IF +DGD AGR AA RAL+ L D + + F+FLP+ DPD+ I
Sbjct: 291 TDHIQLLYRATDRVIFCYDGDSAGREAAWRALKNSLPSLIDGRQLCFMFLPEGEDPDTMI 350
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
RK G + F + + +A L +F E +I +L +I+ K L +P +LRF
Sbjct: 351 RKIGKEAFEQHIAQAKPLSKFLFETLIPQVDLSSIEGRAKLSRLALPLISKVP-GETLRF 409
Query: 301 KIISSLS 307
+ L
Sbjct: 410 YLRQQLG 416
>gi|294626488|ref|ZP_06705087.1| DNA primase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292599178|gb|EFF43316.1| DNA primase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 582
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 169/297 (56%), Gaps = 17/297 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTLA 61
A+ F++ QL+ S+ A ++L RG++ + RF +GYAP+ ++AL + + D ++ L
Sbjct: 120 AATKFFQRQLEGSERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRMSVLE 179
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA--- 118
+GL +K ++ V YD+FR R+MFPI + G++I FGGR + +
Sbjct: 180 RAGL-----FSKNDRGHV------YDKFRDRVMFPIFDRRGRVIAFGGRTMGAPADGRDP 228
Query: 119 --KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET LFHK ELYGL++ + A +K +++ EGYMDV+ L QFG Q VA LG
Sbjct: 229 GPKYLNSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T H + + + F FDGD AGR+A RALE L D + FLFLPD DP
Sbjct: 289 TATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
D+ +RK G + F +++ +A L QFF +E+ +L T+ + L IP
Sbjct: 349 DTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREISLHTLDGKARLAERARPLLAQIP 405
>gi|417839651|ref|ZP_12485824.1| DNA primase [Haemophilus haemolyticus M19107]
gi|341952017|gb|EGT78560.1| DNA primase [Haemophilus haemolyticus M19107]
Length = 593
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 163/258 (63%), Gaps = 11/258 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 AKFYQSQLPLNTQAQEYLQQRGLSSEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK NELYGL+EA A ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGNELYGLYEALQANDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLP+ DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPEGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFF 262
+ F + + A SL +F
Sbjct: 356 KEKFEEYIESAQSLSEFM 373
>gi|260580979|ref|ZP_05848802.1| DNA primase [Haemophilus influenzae RdAW]
gi|260092338|gb|EEW76278.1| DNA primase [Haemophilus influenzae RdAW]
Length = 593
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 126/365 (34%), Positives = 203/365 (55%), Gaps = 25/365 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 ATFYQNQLPLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK ELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGKELYGLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ IL T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 296 QLILRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + A SL +F + + T + K L IP LR + +
Sbjct: 356 KEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP-GEMLRLSLRN 414
Query: 305 SLSKIIKV-SFNEINNLF-----KINTSS-IKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
L++ + + ++ NL + NT + H I+K ++ ++ LL+ P L
Sbjct: 415 MLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPMR------MVISLLMQNPEL 468
Query: 358 INEIN 362
+ ++
Sbjct: 469 VKRMS 473
>gi|387126240|ref|YP_006294845.1| DNA primase [Methylophaga sp. JAM1]
gi|386273302|gb|AFI83200.1| DNA primase [Methylophaga sp. JAM1]
Length = 574
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 162/267 (60%), Gaps = 15/267 (5%)
Query: 5 SDFYKIQLKNSKEAINF---LKKRGLNEEIILRFNLGYAPNEWNALNKVFLD-YNNINTL 60
S +Y QL+N + F +++RGL+ E + F++G AP+ W+ + + F + + + L
Sbjct: 120 SRYYVHQLQNHPQRQAFQDYIQQRGLSAETVAAFDIGMAPDGWDNVLRTFGNNQQSQDQL 179
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+G+++ +K + YDRFR R+MFPI++ G++I FGGR+I KY
Sbjct: 180 FEAGMLIKN-----------DKGRTYDRFRDRLMFPIRDRRGRVIAFGGRVIDADGTPKY 228
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETP+FHK ELYGL++A+ A + +LI EGYMDVI L+QFG VA LGTA T
Sbjct: 229 LNSPETPIFHKGQELYGLYQARKANRRLESILIVEGYMDVIALAQFGINNAVATLGTATT 288
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
S H+++++ IIF FDGD+AG+ AA RA E + + +KF+FLP+ DPD+ +
Sbjct: 289 SEHLRQLIRSAPEIIFCFDGDRAGKEAAWRAAENAMPILGGNFELKFMFLPEGQDPDTMV 348
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEII 267
R+ G F + V +A S FF ++
Sbjct: 349 REQGAATFHQLVSQAQSYSDFFFATLL 375
>gi|165976902|ref|YP_001652495.1| DNA primase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|165877003|gb|ABY70051.1| DNA primase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
Length = 580
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 193/350 (55%), Gaps = 18/350 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
S FY+ L + ++L+ RGL+ EII RF +G+A N ++ L K + + + L +
Sbjct: 127 SRFYQQNLTQDIPSQSYLQSRGLSPEIIARFEIGFAYNSMDSVLRKFGTNRDEVQKLFDT 186
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ ++ YD+FR R+MFPI++ G++I FGGR++ D KY+NS
Sbjct: 187 GMITQNDSGRI-----------YDKFRNRVMFPIRDKRGRVIAFGGRVMGDER-PKYLNS 234
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ ++HK NELYGLF+A E +++ EGYMDV+ L+QFG VA LGTA T
Sbjct: 235 PESAIYHKGNELYGLFQALQQNENPTSLVVVEGYMDVVALAQFGVDNVVASLGTATTGEQ 294
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+++ T +I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS++R
Sbjct: 295 IQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDGEDPDSFVRAQ 354
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F + AMSL F + +I +L + + K L IP LR +
Sbjct: 355 GKQGFEGYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLINRIP-GEMLRVYLR 413
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
+ L + K+ + L + S + + ++KK +Q I+ M+LLI+
Sbjct: 414 NILGQ--KLGILDPAQLEAMLPS--RSQAVQKKAVQTPQIKRTPMRLLIA 459
>gi|163751573|ref|ZP_02158795.1| DNA primase [Shewanella benthica KT99]
gi|161328581|gb|EDP99734.1| DNA primase [Shewanella benthica KT99]
Length = 575
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/275 (38%), Positives = 164/275 (59%), Gaps = 16/275 (5%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNN 56
M AS ++ QL+ K+ +++L RGL+E++I F++G+AP W+ L ++ ++
Sbjct: 117 MEEASRHFQSQLRQHKDKQKVVDYLDHRGLSEKVIEDFHIGFAPEGWDGLLSRYRQSQDS 176
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ L ++G+V++ + +RYDRFR R+MFPI++ G++IGFGGR++ D
Sbjct: 177 QDKLLTAGMVIEN-----------DNGRRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT 225
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPETP+FHK NELYGL+E K VLI EGYMDV+ L+QF VA LG
Sbjct: 226 -PKYLNSPETPIFHKGNELYGLYELKQRHRDPQRVLIVEGYMDVVALAQFDVDYAVASLG 284
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T+ + +L +I +DGD+AG AA RALE L +KF+FLP DP
Sbjct: 285 TATTAEQFQLLLRTAKEVICCYDGDRAGVEAAWRALETALPLLKPGNQVKFMFLPQGEDP 344
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYN 271
D+ +R+ G + F ++ +A +L +F E + +
Sbjct: 345 DTMVRQVGKEAFESQIDDAKALPEFLFETLAQRHG 379
>gi|240948936|ref|ZP_04753292.1| DNA primase [Actinobacillus minor NM305]
gi|240296751|gb|EER47362.1| DNA primase [Actinobacillus minor NM305]
Length = 581
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/272 (39%), Positives = 163/272 (59%), Gaps = 14/272 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
+ FY+ L+ + ++L++RGL+ EII RF +G+APN ++A L K + + L +
Sbjct: 128 TQFYQQNLQQDIPSQSYLQQRGLSPEIIARFEIGFAPNAYDAVLRKFGKNPEEVQKLRDT 187
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ + ++ YD+FR RIMFPI++ G++I FGGR++ D KY+NS
Sbjct: 188 GMLSESESGRI-----------YDKFRNRIMFPIRDKRGRVIAFGGRVMGDER-PKYLNS 235
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGL++A E Y+ + EGYMDV+ L+QFG VA LGTA T
Sbjct: 236 PESATYHKGNELYGLYQALQVDENPQYLFVVEGYMDVVALAQFGVENAVASLGTATTGEQ 295
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+++ T II +DGD+AGR AA RA E L Y D + +KF+FLPD DPD+++R
Sbjct: 296 IQQMFRVTEQIICCYDGDRAGRDAAWRAFENALPYLYDGRQLKFIFLPDGEDPDTFVRSQ 355
Query: 244 GYKIFSKKVLE-AMSLLQFFLEEIILNYNLKT 274
G F + E A SL F + +++ +L +
Sbjct: 356 GKSGFEHYLQENAKSLSDFLFDSLLVQVDLSS 387
>gi|417841158|ref|ZP_12487263.1| DNA primase [Haemophilus haemolyticus M19501]
gi|341949752|gb|EGT76353.1| DNA primase [Haemophilus haemolyticus M19501]
Length = 593
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 200/373 (53%), Gaps = 33/373 (8%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M+ + FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 123 MLEIAKFYQSQLPLNAQAQGYLQQRGLSAEIIERFQIGFVPNAMDTVLRKF----GVNRE 178
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY
Sbjct: 179 EQQKLIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKY 231
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPET +HK NELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ T
Sbjct: 232 LNSPETITYHKGNELYGLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTT 291
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
S I+ I T +I +DGD+AGR AA RALE L Y D + +KF+FLP+ DPD+YI
Sbjct: 292 SEQIQLIFRSTEQVICCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPEGEDPDTYI 351
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP---LSSS 297
R++G + F + + A SL +F + + + + K L + IP L S
Sbjct: 352 RQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSSKEGRGKLVALAAPLIRQIPGEMLRLS 411
Query: 298 LRFKII--------SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMK 349
LR + + L +I + N K+ + IK + ++
Sbjct: 412 LRNMLAQKLGIFDQTQLENLIPKQLEQTNTQQKVANNKIKKTPMR-----------MVIS 460
Query: 350 LLISYPSLINEIN 362
LL+ P L+ I+
Sbjct: 461 LLLQNPELVKRIS 473
>gi|409202668|ref|ZP_11230871.1| DNA primase [Pseudoalteromonas flavipulchra JG1]
Length = 579
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 127/370 (34%), Positives = 207/370 (55%), Gaps = 31/370 (8%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNN 56
M+ A+ FY+ QLK N+ + I+++K RGL+ E + +F +GYAP EW +L N++ +
Sbjct: 120 MLQAAKFYQHQLKHHSNATQVIDYVKGRGLSGETVQKFMIGYAPPEWESLCNQIARKPEH 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
L L +K + ++D FR R+MFPI++ G++I FGGR++
Sbjct: 180 KQQLLDLKLASEKSAGR-----------QFDFFRDRLMFPIRDKRGRVIAFGGRIMGADQ 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET +FHKS ELYG +EAK A ++ VLI EGYMDV+ L++ G VA LG
Sbjct: 229 GPKYLNSPETRIFHKSFELYGFYEAKQAHKQLDKVLIVEGYMDVVALAEKGIDYAVAALG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T+ H++ + TN +I +DGD+AGR AA RAL+ L D K ++F+FLPD DP
Sbjct: 289 TATTAEHMQTLFRNTNRVICCYDGDRAGRDAAWRALDHALPNLKDGKSLQFVFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS 296
DS +++ G F ++ A Q ++ +L D KSK L IPL S
Sbjct: 349 DSLVQQEGKDAFEARLDTATDYTQVLFTKLREQCDL--TNDAGKSK----LLTDAIPLIS 402
Query: 297 SL-----RFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLL 351
+ + ++++L+++I + +++ K+ ++ ++K + + P+ + + LL
Sbjct: 403 KIPSDYYQESLLTTLARLIGRTREQLSA--KLASNKQQNKIERQFKVTPM---RRAIGLL 457
Query: 352 ISYPSLINEI 361
+ +P L +
Sbjct: 458 LQHPQLAQTV 467
>gi|333894439|ref|YP_004468314.1| DNA primase [Alteromonas sp. SN2]
gi|332994457|gb|AEF04512.1| DNA primase [Alteromonas sp. SN2]
Length = 593
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 153/452 (33%), Positives = 238/452 (52%), Gaps = 52/452 (11%)
Query: 7 FYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
F++ QLK NS +AI++LK RGL+ +I+ ++ +GYAP+ W+AL K F +
Sbjct: 128 FFQHQLKQNENSGKAIDYLKSRGLSGDIVKQWEIGYAPDSWDALLKTF----GKDQARVK 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
L+ K++N+ +Q +RYD FR RIMFPI++ G+++GFGGR+++D KY+NS
Sbjct: 184 QLIDLKLVNQNDQG------RRYDFFRDRIMFPIRDKRGRVVGFGGRVLEDGG-PKYLNS 236
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +EL+G ++A+ + VLI EGYMDV+ LSQFG Q A LGTA T+ H
Sbjct: 237 PETRIFHKGSELFGFYQARQQNRQLDAVLIVEGYMDVVALSQFGINQATAALGTATTAEH 296
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
++ ++ T I+ +DGD+AGR AA RALE L D + FLFLPD DPD+ +RK
Sbjct: 297 MQMLVRATPHIVCCYDGDRAGREAAWRALENALPALKDGVRLSFLFLPDGEDPDTMVRKI 356
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK-- 301
G F + + AM L +FF E LKT K + + I +PL S++
Sbjct: 357 GKDAFMEMLDNAMPLSRFFFEN-----QLKTHK-VGTPEGKIALRKAAMPLIESVQGDDQ 410
Query: 302 ---IISSLSKIIKV--SFNEINNLFKINTSSIK------HKTIEKKNIQPICIEYQIMKL 350
++ L+K F ++ K N +S K + K + P+ + +++L
Sbjct: 411 KQMLLEELAKHTGEYDRFKLQQDISKANHASSKPAYSANRNQVGKARLSPLRM---LIRL 467
Query: 351 LISYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNF 410
L+ PSL + +F + + L+D IH +Y + +
Sbjct: 468 LLDSPSLATRCDDVQPSVFEGSDATGMDL---LLD-IH------------RYCAQYPQAT 511
Query: 411 ESIIVKIQDNFEYSIEIAKKTLLDAIYKDRKS 442
+ +V+ N +S IAK L + + KD +
Sbjct: 512 TAQLVENFRNHPHSSTIAKLLLQEHLVKDEDA 543
>gi|407693700|ref|YP_006818489.1| DNA primase [Actinobacillus suis H91-0380]
gi|407389757|gb|AFU20250.1| DNA primase [Actinobacillus suis H91-0380]
Length = 580
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 129/389 (33%), Positives = 204/389 (52%), Gaps = 24/389 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
S FY+ L + ++L+ RGL+ EII RF +G+A N ++ L K + + + L +
Sbjct: 127 SQFYQQNLTQDIPSQSYLQSRGLSPEIIARFEIGFAHNSMDSVLRKFGTNRDEVQKLFDT 186
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ ++ YD+FR R+MFPI++ G++I FGGR++ D KY+NS
Sbjct: 187 GMITQNDSGRI-----------YDKFRNRVMFPIRDKRGRVIAFGGRVMGDER-PKYLNS 234
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGLF+A E +++ EGYMDV+ L+QFG VA LGTA T
Sbjct: 235 PESATYHKGNELYGLFQALQQNENPTSLVVVEGYMDVVALAQFGVDNVVASLGTATTGEQ 294
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+++ T +I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS++R
Sbjct: 295 IQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDGEDPDSFVRVH 354
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F + AMSL F + +I +L + + K L IP LR +
Sbjct: 355 GKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAVPLINRIP-GEMLRVYLR 413
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISY----PSLIN 359
+ L + K+ + L + S K + ++K Q + I+ M+LL++ P L+
Sbjct: 414 NLLGQ--KLGILDPAQLEAMLPS--KAQVVQKPATQTLQIKRTPMRLLVALLLQNPELVK 469
Query: 360 EINSEDMIIFSKCSQNYVKMFFQLIDTIH 388
+ D+ + ++ +L+D
Sbjct: 470 FV--PDISALKTLDEPGFELLLELVDVCQ 496
>gi|307261954|ref|ZP_07543612.1| DNA primase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|306868365|gb|EFN00184.1| DNA primase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
Length = 580
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 192/350 (54%), Gaps = 18/350 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
S FY+ L + ++L+ RGL+ EII RF +G+A N ++ L K + + + L +
Sbjct: 127 SRFYQQNLTQDIPSQSYLQSRGLSPEIIARFEIGFAYNSMDSVLRKFGTNRDEVQKLFDT 186
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ ++ YD+FR R+MFPI++ G++I FGGR++ D KY+NS
Sbjct: 187 GMITQNDSGRI-----------YDKFRNRVMFPIRDKRGRVIAFGGRVMGDER-PKYLNS 234
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGLF+A E +++ EGYMDV+ L+QFG VA LGTA T
Sbjct: 235 PESATYHKGNELYGLFQALQQNENPTSLVVVEGYMDVVALAQFGVDNVVASLGTATTGEQ 294
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+++ T +I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS++R
Sbjct: 295 IQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDGEDPDSFVRAQ 354
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F + AMSL F + +I +L + + K L IP LR +
Sbjct: 355 GKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLINRIP-GEMLRVYLR 413
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
+ L + K+ + L + S + + ++KK +Q I+ M+LLI+
Sbjct: 414 NILGQ--KLGILDPAQLEAMLPS--RSQAVQKKAVQTPQIKRTPMRLLIA 459
>gi|342903625|ref|ZP_08725434.1| DNA primase [Haemophilus haemolyticus M21621]
gi|341954976|gb|EGT81442.1| DNA primase [Haemophilus haemolyticus M21621]
Length = 593
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 163/258 (63%), Gaps = 11/258 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 AKFYQSQLPLNTQAQEYLQQRGLSAEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK NELYGL+EA A ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGNELYGLYEALQANDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLP+ DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPEGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFF 262
+ F + + A SL +F
Sbjct: 356 KEKFEEYIESAQSLSEFM 373
>gi|386265081|ref|YP_005828573.1| DNA primase [Haemophilus influenzae R2846]
gi|309972317|gb|ADO95518.1| DNA primase [Haemophilus influenzae R2846]
Length = 593
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 198/364 (54%), Gaps = 23/364 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 ATFYQNQLPLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK ELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGKELYGLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP---LSSSLRFK 301
+ F + + A SL +F + + T + K L IP L SLR
Sbjct: 356 KEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGCGKLVALAAPLIHQIPGEMLRLSLRNM 415
Query: 302 IISSLSKIIKVSFNEI--NNLFKINTSS-IKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+ L + + L + NT + H I+K ++ ++ LL+ P L+
Sbjct: 416 LAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPMR------MVISLLLQNPELV 469
Query: 359 NEIN 362
++
Sbjct: 470 KRMS 473
>gi|9256898|pdb|1EQN|A Chain A, E.Coli Primase Catalytic Core
gi|9256899|pdb|1EQN|B Chain B, E.Coli Primase Catalytic Core
gi|9256900|pdb|1EQN|C Chain C, E.Coli Primase Catalytic Core
gi|9256901|pdb|1EQN|D Chain D, E.Coli Primase Catalytic Core
gi|9256902|pdb|1EQN|E Chain E, E.Coli Primase Catalytic Core
Length = 321
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 163/271 (60%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 18 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 77
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G +V ++ + YDRFR R+ FPI++ G++IGFGGR++ + + KY+NS
Sbjct: 78 GXLVTN-----------DQGRSYDRFRERVXFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 125
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGY DV+ L+Q+G VA LGT+ T+ H
Sbjct: 126 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYXDVVALAQYGINYAVASLGTSTTADH 185
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F FLPD DPD+ +RK
Sbjct: 186 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYXTDGRQLRFXFLPDGEDPDTLVRKE 245
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F + +A L F + +L T
Sbjct: 246 GKEAFEARXEQAXPLSAFLFNSLXPQVDLST 276
>gi|402759109|ref|ZP_10861365.1| DNA primase [Acinetobacter sp. NCTC 7422]
Length = 630
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 122/353 (34%), Positives = 190/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL NS++A N+ K+RGL+ + I + LGYAP +W L K F +I L G
Sbjct: 181 AQFYERQLPNSQKAQNYFKQRGLSPQTIQFWRLGYAPEDWQHLEKAF--PQDIEGLKQLG 238
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 239 LIRSS-----------DSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSP 287
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 288 DSEVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGINGAVATLGTASNAEHL 345
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + I +FDGD AG++AARR LE+ L D + +KF LP+++DPDS IR+ G
Sbjct: 346 TTLFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNEHDPDSLIRREG 405
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F K + +A L F + +++ T + + L +++P S R+
Sbjct: 406 LENFQKLLQQAPLLSDFVFAHLTGQHDVSTPEGKSLVMGELRELTELLPKHGSFRY---- 461
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ + +L+ +P L
Sbjct: 462 ----LLSQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAVA-ILMHHPFL 509
>gi|424745868|ref|ZP_18174127.1| putative DNA primase [Acinetobacter baumannii WC-141]
gi|422941687|gb|EKU36752.1| putative DNA primase [Acinetobacter baumannii WC-141]
Length = 624
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 128/354 (36%), Positives = 190/354 (53%), Gaps = 26/354 (7%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL NS++A N+ K+RGL + I + LGYAP +W L K F +I+ L G
Sbjct: 175 AQFYEHQLPNSQKAKNYFKQRGLTNQTIQFWRLGYAPEDWQHLEKAFP--YDIDGLKQLG 232
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 233 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 281
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + KS L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 282 DSEVFHKNQLLYGLYEGRKL--KSSDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 339
Query: 185 KKILFYTNS-IIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
ILF NS I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+
Sbjct: 340 -NILFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRRE 398
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F K + +A L F + +++ T + + L ++P S R+
Sbjct: 399 GLENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTDLLPKQGSFRY--- 455
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NI ++ I +L+ +P L
Sbjct: 456 -----LLNQSFREKLGLGKRFTPQISHDASLSFNIHTKDEDFAIA-ILMHHPFL 503
>gi|50085933|ref|YP_047443.1| DNA primase [Acinetobacter sp. ADP1]
gi|49531909|emb|CAG69621.1| DNA primase [Acinetobacter sp. ADP1]
Length = 629
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 121/353 (34%), Positives = 188/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL NS +A + K+RGL+ E I + LGYAP +W L K F +I L G
Sbjct: 180 AQFYEKQLPNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAFP--YDIEGLKQVG 237
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 238 LIRSS-----------DSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSP 286
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 287 DSEIFHKNQLLYGLYEGRKL--KAKDWLMVEGYMDVIALQQYGVYGAVATLGTASNADHL 344
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + I +FDGD AG++AARR LE+ L D + +KF LP ++DPDS IR+ G
Sbjct: 345 NTLFKQNSRITIAFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREG 404
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + +A L F + +++ T + + + L +++P S R+
Sbjct: 405 LEHFQRLLEQAPLLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRY---- 460
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L + T I H NIQ ++ + LL+ +P L
Sbjct: 461 ----LLTQSFREKLGLGRKWTPQISHDASLSFNIQTKDEDFAVA-LLMQHPYL 508
>gi|440509640|ref|YP_007347076.1| DNA primase [Candidatus Blochmannia chromaiodes str. 640]
gi|440453853|gb|AGC03345.1| DNA primase [Candidatus Blochmannia chromaiodes str. 640]
Length = 581
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 207/390 (53%), Gaps = 27/390 (6%)
Query: 2 ICASDFYKIQLKNSKE--AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNIN 58
+CA +YK L K A +LK RGLN + I FN+G+AP WN + + F L +
Sbjct: 120 LCA--YYKNILTQEKYLYAYKYLKNRGLNTKTIDDFNIGFAPPRWNNIIQKFGLTLYDQK 177
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
L SG+++ S +KYK YDRFR R+MFPI++ G+I+ FGGR+I +
Sbjct: 178 LLDQSGMLI---------SSNTKKYK-YDRFRDRLMFPIRDIAGRIVAFGGRVITQNKIP 227
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSP+T +F KS LYGL+EA+ +L+ EGY+DV+ L+QFG VA LGT+
Sbjct: 228 KYLNSPDTEIFKKSQHLYGLYEARMKHRNLSCILLVEGYIDVVTLTQFGINYAVAALGTS 287
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
T HI+ + T+ II +DGD AG++AA R L L Y TD++ I F FLP DPD+
Sbjct: 288 TTDNHIRLLYSITDQIICCYDGDYAGKKAAWRTLNTALPYLTDERQIHFAFLPHGEDPDT 347
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSL 298
IRK G F K++ + L F E + NL+T+ K I + K IP +L
Sbjct: 348 LIRKIGKDNFLKRLTQTQDLSNFLFETLSKKTNLQTLSGRVKLSSLILPILKKIP-GQTL 406
Query: 299 RFKIISSLS-KIIKVSFNEINNLFKINTSSIKHK---TIEKKNIQPICIEYQIMKLLISY 354
+ ++ L KI + N++N L N + +K NI I ++ LLI
Sbjct: 407 KLCLLQQLGNKIGILDDNKLNQLLTRNPVTYTNKINRCYVNNNIGHI-----LVGLLIQN 461
Query: 355 PSLINEINSEDMIIFSKCSQNYVKMFFQLI 384
P L + S + + QN + MF LI
Sbjct: 462 PRLSKLVPSTQGL--EQLKQNDIVMFIDLI 489
>gi|294139650|ref|YP_003555628.1| DNA primase [Shewanella violacea DSS12]
gi|293326119|dbj|BAJ00850.1| DNA primase [Shewanella violacea DSS12]
Length = 575
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 107/270 (39%), Positives = 163/270 (60%), Gaps = 16/270 (5%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNN 56
M AS ++ QL+ K+ +++L+ RGL+E++I FN+G+AP W+ L ++ ++
Sbjct: 117 MEEASRHFQSQLRQDKDKQKVLDYLEHRGLSEKVIADFNIGFAPEGWDGLLSRYRQSQDS 176
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ L ++G+V++ + +RYDRFR R+MFPI++ G++IGFGGR++ D
Sbjct: 177 QDKLLTAGMVIEN-----------DSGRRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT 225
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPETP+FHK ELYGL+E K VLI EGYMDV+ L+QF VA LG
Sbjct: 226 -PKYLNSPETPIFHKGYELYGLYELKQRHRDPQRVLIVEGYMDVVALAQFDVDYAVASLG 284
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T+ + +L +I +DGD+AG AA RALE L +KF+FLP DP
Sbjct: 285 TATTAEQFQLLLRSAKEVICCYDGDRAGVEAAWRALETALPLLKPGNQVKFMFLPQGEDP 344
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEI 266
D+ +R+ G + F ++ +A +L +F E +
Sbjct: 345 DTMVRQVGKEAFESQIDDAKALPEFLFETL 374
>gi|114048480|ref|YP_739030.1| DNA primase [Shewanella sp. MR-7]
gi|113889922|gb|ABI43973.1| DNA primase [Shewanella sp. MR-7]
Length = 574
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 162/275 (58%), Gaps = 16/275 (5%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M AS F++ QL+ ++ I++L RGL+++I+ F +G+AP+ W+ L + +
Sbjct: 117 MEEASRFFQTQLRQHQDKQKVIDYLAYRGLSDDIVEHFGIGFAPDGWDGLLSRYRHSQDA 176
Query: 58 -NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ L ++G+++ + KRYDRFR R+MFPI++ G++IGFGGR++ D
Sbjct: 177 QDKLLTAGMLISN-----------DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT 225
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPETP+FHK NELYGL+E K VLI EGYMDV+ L+Q+G VA LG
Sbjct: 226 -PKYLNSPETPIFHKGNELYGLYELKQRHRDPDKVLIVEGYMDVVALAQYGVDYAVASLG 284
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
T+ T+ + +L +I +DGD+AG AA RALE L ++F+FLP DP
Sbjct: 285 TSTTAEQFQLLLRSAKEVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSEDP 344
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYN 271
DS +RK G F + + A++L +F + + +
Sbjct: 345 DSMVRKIGKDAFEQMMESAITLPEFLFDTLATKFG 379
>gi|87119777|ref|ZP_01075674.1| DNA primase [Marinomonas sp. MED121]
gi|86165253|gb|EAQ66521.1| DNA primase [Marinomonas sp. MED121]
Length = 651
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 115/274 (41%), Positives = 162/274 (59%), Gaps = 25/274 (9%)
Query: 1 MICASDFYKIQL---KNSKEAINFL-KKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN 56
+ ++ F++ QL + +A ++L K+RGL+ +I F LG+AP W+ L
Sbjct: 117 LTQSASFFQKQLIENEQKTKATDYLAKERGLSGQIAKVFGLGFAPPGWDNL--------- 167
Query: 57 INTLASSG------LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGR 110
+ TL SG L+ +I K +Q+ YDRFR RIMFPI+++ G++I FGGR
Sbjct: 168 LQTLGKSGDQKEQLLLAGMLIEKKDQAGHF-----YDRFRDRIMFPIRDSRGRVIAFGGR 222
Query: 111 LIKDSNEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQ 170
D + KY+NSPETP+F KS ELYGL+EAK ++ ++LI EGYMDVI L+Q G
Sbjct: 223 AFGDE-KPKYLNSPETPVFQKSQELYGLYEAKQNTQQLDHILIVEGYMDVIVLAQHGITN 281
Query: 171 TVAILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFL 230
VA LGT+ S HIKK+ + + FDGD+AGR AA R LE L D K ++FLFL
Sbjct: 282 AVATLGTSVNSNHIKKLFKLVSKVTLCFDGDKAGRAAAIRGLEATLPVMQDGKQVRFLFL 341
Query: 231 PDKYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLE 264
P+ DPDS +R G F++K+ ++ SL E
Sbjct: 342 PEGEDPDSLVRDIGKDAFTEKLEDSSSLSHVLFE 375
>gi|388455430|ref|ZP_10137725.1| DNA primase DnaG [Fluoribacter dumoffii Tex-KL]
Length = 574
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 161/271 (59%), Gaps = 14/271 (5%)
Query: 3 CASDFYKIQLKN-SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA 61
S +Y+ QLK+ + AI +L+ RGL+ EI + LG+A + W+ L K F N L
Sbjct: 118 AVSLYYQKQLKHEGQAAIEYLRSRGLSGEIAKLYQLGFASDGWHHLEKAF--PRNQRELL 175
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
++G+++ E K YDR+R R+MFPI + G+IIGFGGR++ + KY+
Sbjct: 176 ATGMLIKN-----------EDGKIYDRYRNRVMFPIHDRHGRIIGFGGRVLDKEQKPKYL 224
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +F KS ELYGL + + + Y+++ EGYMDVI L+Q G + VA LGTA ++
Sbjct: 225 NSPETVIFQKSRELYGLHQILSQQKNVEYIIVVEGYMDVIALAQHGIMNAVATLGTATST 284
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + +T S+IF FDGD AGR+AA RALE L + F+FLPD DPDS +R
Sbjct: 285 YHIQLLAKHTKSLIFCFDGDNAGRQAAWRALESSLPHLNLGLDASFMFLPDGQDPDSLVR 344
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
G F ++ +A L +F + + + NL
Sbjct: 345 AEGKDQFLNRIKQATPLHRFLFDTLAKDLNL 375
>gi|190150751|ref|YP_001969276.1| DNA primase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
gi|307264153|ref|ZP_07545747.1| DNA primase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
gi|189915882|gb|ACE62134.1| DNA primase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
gi|306870527|gb|EFN02277.1| DNA primase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
Length = 580
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 192/350 (54%), Gaps = 18/350 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
S FY+ L + ++L+ RGL+ EII RF +G+A N ++ L K + + + L +
Sbjct: 127 SRFYQQNLTQDIPSQSYLQNRGLSAEIIARFEIGFAYNSMDSVLRKFGTNRDEVQKLFDT 186
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ ++ YD+FR R+MFPI++ G++I FGGR++ D KY+NS
Sbjct: 187 GMITQNDSGRI-----------YDKFRNRVMFPIRDKRGRVIAFGGRVMGDER-PKYLNS 234
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGLF+A E +++ EGYMDV+ L+QFG VA LGTA T
Sbjct: 235 PESATYHKGNELYGLFQALQQNENPTSLVVVEGYMDVVALAQFGVDNVVASLGTATTGEQ 294
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+++ T +I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS++R
Sbjct: 295 IQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDGEDPDSFVRAQ 354
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F + AMSL F + +I +L + + K L IP LR +
Sbjct: 355 GKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLINRIP-GEMLRVYLR 413
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
+ L + K+ + L + S + + ++KK +Q I+ M+LLI+
Sbjct: 414 NILGQ--KLGILDPAQLEAMLPS--RSQAVQKKAVQTPQIKRTPMRLLIA 459
>gi|336312457|ref|ZP_08567406.1| DNA primase [Shewanella sp. HN-41]
gi|335863963|gb|EGM69081.1| DNA primase [Shewanella sp. HN-41]
Length = 574
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 163/275 (59%), Gaps = 16/275 (5%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNN 56
M AS +++ QL+ ++ +++L RGL+++I+ F +G+AP+ W+ L + + +
Sbjct: 117 MEEASRYFQTQLRQHQDKQKVVDYLAYRGLSDDIVEHFGIGFAPDGWDGLLGRYRQNQDA 176
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ L ++G+++ + KRYDRFR R+MFPI++ G++IGFGGR++ D
Sbjct: 177 QDKLLTAGMLISN-----------DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT 225
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPETP+FHK NELYGL+E K VLI EGYMDV+ L+Q+G VA LG
Sbjct: 226 -PKYLNSPETPIFHKGNELYGLYELKQRHRDPDKVLIVEGYMDVVALAQYGVDYAVASLG 284
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
T+ T+ + +L ++ +DGD+AG AA RALE L ++F+FLP DP
Sbjct: 285 TSTTAEQFQLLLRSAKEVVCCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAEDP 344
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYN 271
DS +RK G + F + A+SL +F + + Y
Sbjct: 345 DSMVRKIGKEAFETLMNSAISLPEFLFDTLATKYG 379
>gi|149376142|ref|ZP_01893907.1| DNA primase (bacterial type) [Marinobacter algicola DG893]
gi|149359547|gb|EDM48006.1| DNA primase (bacterial type) [Marinobacter algicola DG893]
Length = 577
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 197/364 (54%), Gaps = 23/364 (6%)
Query: 4 ASDFYKIQLKNSKE--AINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINTL 60
AS FY+ LK + A ++LK+RGL++ II ++ LGYAP AL + D L
Sbjct: 120 ASRFYQSALKGQQGEFARDYLKQRGLDDSIIEQYQLGYAPGTGTALFDSASRDLQG--PL 177
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKR-YDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
+G V D+ Y R D FR R+MFPI+N+ G+ I FGGR + D ++AK
Sbjct: 178 VETGTVSDR-------------YGRPRDLFRNRVMFPIRNSRGRTIAFGGRTLGD-DKAK 223
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
YINSPE+ +FHKS E+YGL+EAK +I + +L+ EGYMDVI L+Q G VA LGTA
Sbjct: 224 YINSPESDVFHKSREIYGLYEAKQSIRQLDRLLVVEGYMDVIALAQNGIHFAVATLGTAT 283
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
+ +L ++F FDGDQAG RAA +ALE L TD ++FL +PD DPD+
Sbjct: 284 NQDSLSALLKQVRHLVFCFDGDQAGYRAADKALENALELLTDGLHLQFLMMPDGEDPDTL 343
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
+RK G F +++ A L ++ +L +D + K +E L K +P S+LR
Sbjct: 344 VRKEGPDAFQERINGATPLSRYLFNRQSEGLDLTLPEDRGELKARVEPLLKKMP-RSTLR 402
Query: 300 FKIISSLSKIIKVSFNEINNLFKINT-SSIKHKTIEKKNIQ-PICIEYQIMKLLISYPSL 357
+ + ++ + + N + N + ++++ I + + Q+ L+ P +
Sbjct: 403 DAMWHEMLRLCGNNRGDWQNRRQPNGKGGYGERRVQEQRIDVKLSKDTQLCLALLEAPDM 462
Query: 358 INEI 361
+EI
Sbjct: 463 ASEI 466
>gi|117921524|ref|YP_870716.1| DNA primase [Shewanella sp. ANA-3]
gi|117613856|gb|ABK49310.1| DNA primase [Shewanella sp. ANA-3]
Length = 574
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 162/275 (58%), Gaps = 16/275 (5%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M AS F++ QL+ ++ I++L RGL+++I+ F +G+AP+ W+ L + +
Sbjct: 117 MEEASRFFQTQLRQHQDKQKVIDYLAYRGLSDDIVEHFGIGFAPDGWDGLLSRYRHSQDA 176
Query: 58 -NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ L ++G+++ + KRYDRFR R+MFPI++ G++IGFGGR++ D
Sbjct: 177 QDKLLTAGMLISN-----------DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT 225
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPETP+FHK NELYGL+E K VLI EGYMDV+ L+Q+G VA LG
Sbjct: 226 -PKYLNSPETPIFHKGNELYGLYELKQRHRDPDKVLIVEGYMDVVALAQYGVDYAVASLG 284
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
T+ T+ + +L +I +DGD+AG AA RALE L ++F+FLP DP
Sbjct: 285 TSTTAEQFQLLLRSAKEVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSEDP 344
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYN 271
DS +RK G F + + A++L +F + + +
Sbjct: 345 DSMVRKIGKDAFEQMMESAITLPEFLFDTLATKFG 379
>gi|32034494|ref|ZP_00134666.1| COG0358: DNA primase (bacterial type) [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208938|ref|YP_001054163.1| DNA primase [Actinobacillus pleuropneumoniae serovar 5b str. L20]
gi|126097730|gb|ABN74558.1| DNA primase [Actinobacillus pleuropneumoniae serovar 5b str. L20]
Length = 580
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 192/350 (54%), Gaps = 18/350 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
S FY+ L + ++L+ RGL+ EII RF +G+A N ++ L K + + + L +
Sbjct: 127 SRFYQQNLTQDIPSQSYLQNRGLSAEIIARFEIGFAYNSMDSVLRKFGTNRDEVQKLFDT 186
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ ++ YD+FR R+MFPI++ G++I FGGR++ D KY+NS
Sbjct: 187 GMITQNDSGRI-----------YDKFRNRVMFPIRDKRGRVIAFGGRVMGDER-PKYLNS 234
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGLF+A E +++ EGYMDV+ L+QFG VA LGTA T
Sbjct: 235 PESATYHKGNELYGLFQALQQNENPTSLVVVEGYMDVVALAQFGVDNVVASLGTATTGEQ 294
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+++ T +I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS++R
Sbjct: 295 IQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDGEDPDSFVRAQ 354
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F + AMSL F + +I +L + + K L IP LR +
Sbjct: 355 GKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLINRIP-GEMLRVYLR 413
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
+ L + K+ + L + S + + ++KK +Q I+ M+LLI+
Sbjct: 414 NILGQ--KLGILDPAQLEAMLPS--RSQAVQKKAVQTPQIKRTPMRLLIA 459
>gi|217974325|ref|YP_002359076.1| DNA primase [Shewanella baltica OS223]
gi|217499460|gb|ACK47653.1| DNA primase [Shewanella baltica OS223]
Length = 574
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 105/272 (38%), Positives = 162/272 (59%), Gaps = 16/272 (5%)
Query: 4 ASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINT 59
AS +++ QL+ ++ I++L RGL+++++ F +G+AP+ W+ L + + + +
Sbjct: 120 ASLYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQDAQDK 179
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L ++G+++ + KRYDRFR R+MFPI++ G++IGFGGR++ D K
Sbjct: 180 LLTAGMLISN-----------DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT-PK 227
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK NELYGL+E K VLI EGYMDV+ L+QFG VA LGT+
Sbjct: 228 YLNSPETPIFHKGNELYGLYELKQRYRDPDKVLIVEGYMDVVALAQFGVDYAVASLGTST 287
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T+ + +L +I +DGD+AG AA RALE L ++F+FLP DPDS
Sbjct: 288 TAEQFQLLLRSAKEVICCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAEDPDSM 347
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYN 271
+RK G F ++ A++L +F + + Y
Sbjct: 348 VRKIGKDAFETLMVSAIALPEFLFDTLATKYG 379
>gi|417548115|ref|ZP_12199196.1| putative DNA primase [Acinetobacter baumannii Naval-18]
gi|417564797|ref|ZP_12215671.1| putative DNA primase [Acinetobacter baumannii OIFC143]
gi|395556553|gb|EJG22554.1| putative DNA primase [Acinetobacter baumannii OIFC143]
gi|400388414|gb|EJP51486.1| putative DNA primase [Acinetobacter baumannii Naval-18]
Length = 621
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 189/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S++A N+ K+RGL+++ I + LGYAP +W L K F +I L G
Sbjct: 172 AQFYEHQLPTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 229
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 230 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 278
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 279 DSEVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 336
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 337 NILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 396
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F K + +A L F + +++ T + + L +++P S R+
Sbjct: 397 VENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 452
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ I +L+ +P L
Sbjct: 453 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAIA-ILMHHPFL 500
>gi|145628916|ref|ZP_01784716.1| DNA primase [Haemophilus influenzae 22.1-21]
gi|144979386|gb|EDJ89072.1| DNA primase [Haemophilus influenzae 22.1-21]
Length = 593
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 162/258 (62%), Gaps = 11/258 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 ATFYQNQLPLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK ELYGL+EA A ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGKELYGLYEALQANDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFF 262
+ F + + A SL +F
Sbjct: 356 KEKFEEYIESAQSLSEFM 373
>gi|229520814|ref|ZP_04410236.1| DNA primase [Vibrio cholerae TM 11079-80]
gi|229342047|gb|EEO07043.1| DNA primase [Vibrio cholerae TM 11079-80]
Length = 605
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 135/372 (36%), Positives = 216/372 (58%), Gaps = 41/372 (11%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 141 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 200
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR+I +
Sbjct: 201 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDLRGRVIGFGGRVIGEGT- 248
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK +LYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 249 PKYLNSPETPIFHKGEKLYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 308
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T+ HI+ I TN++I +DGD+AGR AARRALE L + +KI+K LFLPD DPD
Sbjct: 309 STTTEHIRDIFRKTNTVICCYDGDRAGRAAARRALENALEFLNANKILKVLFLPDGEDPD 368
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL--- 294
S++RK+G F +++ + L+ F L EI K D + ++ PL
Sbjct: 369 SFVRKYGKARFEEEIQNSQFLVDFLLSEI-----KKEAPDTDSKRWGTYVATNAAPLLNK 423
Query: 295 --SSSLRFKIISSLSKIIKVSFNE------INNLFKINTSS--IKHKTIEKKNIQPICIE 344
SL+ + L+ + +++ +N+L N++S H+ I++ ++
Sbjct: 424 TTDPSLKAYLWKELT--LGTGWSDFQLQKFLNSLLTTNSNSQPAPHRAIKRTPMR----- 476
Query: 345 YQIMKLLISYPS 356
++ LL+ PS
Sbjct: 477 -DVIALLVQNPS 487
>gi|421625104|ref|ZP_16065960.1| putative DNA primase [Acinetobacter baumannii OIFC098]
gi|408699529|gb|EKL45005.1| putative DNA primase [Acinetobacter baumannii OIFC098]
Length = 621
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 189/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S++A N+ K+RGL+++ I + LGYAP +W L K F +I L G
Sbjct: 172 AQFYEHQLPTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 229
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 230 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 278
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 279 DSEVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 336
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 337 NILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 396
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F K + +A L F + +++ T + + L +++P S R+
Sbjct: 397 VENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 452
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ I +L+ +P L
Sbjct: 453 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAIA-ILMHHPFL 500
>gi|24372866|ref|NP_716908.1| DNA primase DnaG [Shewanella oneidensis MR-1]
gi|24346978|gb|AAN54353.1| DNA primase DnaG [Shewanella oneidensis MR-1]
Length = 574
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 164/275 (59%), Gaps = 16/275 (5%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNN 56
M AS F++ QL+ ++ I++L RGL+++I+ F +G+AP+ W+ L ++ + +
Sbjct: 117 MEEASRFFQTQLRQHQDKQKVIDYLAYRGLSDDIVEHFGIGFAPDGWDGLLSRYRQNQDA 176
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ L ++G+++ + KRYDRFR R+MFPI++ G++IGFGGR++ D
Sbjct: 177 QDKLLTAGMLISN-----------DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT 225
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPETP+FHK NELYGL+E K VLI EGYMDV+ L+Q+G VA LG
Sbjct: 226 -PKYLNSPETPIFHKGNELYGLYELKQRHRDPDKVLIVEGYMDVVALAQYGVDYAVASLG 284
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
T+ T+ + +L +I +DGD+AG AA RALE L ++F+FLP DP
Sbjct: 285 TSTTAEQFQLLLRSAKEVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSEDP 344
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYN 271
DS +RK G F + + A++L +F + + +
Sbjct: 345 DSMVRKIGKDPFEQLMESAITLPEFLFDTLATKFG 379
>gi|421809627|ref|ZP_16245460.1| putative DNA primase [Acinetobacter baumannii OIFC035]
gi|410413987|gb|EKP65794.1| putative DNA primase [Acinetobacter baumannii OIFC035]
Length = 621
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 189/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S++A N+ K+RGL+++ I + LGYAP +W L K F +I L G
Sbjct: 172 AQFYEHQLPTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 229
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 230 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 278
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 279 DSEVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 336
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 337 NILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 396
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F K + +A L F + +++ T + + L +++P S R+
Sbjct: 397 VENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 452
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ I +L+ +P L
Sbjct: 453 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAIA-ILMHHPFL 500
>gi|445452677|ref|ZP_21444985.1| putative DNA primase [Acinetobacter baumannii WC-A-92]
gi|444754213|gb|ELW78839.1| putative DNA primase [Acinetobacter baumannii WC-A-92]
Length = 621
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 189/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S++A N+ K+RGL+++ I + LGYAP +W L K F +I L G
Sbjct: 172 AQFYEHQLPTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 229
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 230 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 278
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 279 DSEVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 336
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 337 NILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 396
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F K + +A L F + +++ T + + L +++P S R+
Sbjct: 397 VENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 452
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ I +L+ +P L
Sbjct: 453 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAIA-ILMHHPFL 500
>gi|160874341|ref|YP_001553657.1| DNA primase [Shewanella baltica OS195]
gi|373948592|ref|ZP_09608553.1| DNA primase [Shewanella baltica OS183]
gi|378707587|ref|YP_005272481.1| DNA primase [Shewanella baltica OS678]
gi|386325566|ref|YP_006021683.1| DNA primase [Shewanella baltica BA175]
gi|418023211|ref|ZP_12662196.1| DNA primase [Shewanella baltica OS625]
gi|160859863|gb|ABX48397.1| DNA primase [Shewanella baltica OS195]
gi|315266576|gb|ADT93429.1| DNA primase [Shewanella baltica OS678]
gi|333819711|gb|AEG12377.1| DNA primase [Shewanella baltica BA175]
gi|353537094|gb|EHC06651.1| DNA primase [Shewanella baltica OS625]
gi|373885192|gb|EHQ14084.1| DNA primase [Shewanella baltica OS183]
Length = 574
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/272 (38%), Positives = 162/272 (59%), Gaps = 16/272 (5%)
Query: 4 ASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINT 59
AS +++ QL+ ++ I++L RGL+++++ F +G+AP+ W+ L + + + +
Sbjct: 120 ASLYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQDAQDK 179
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L ++G+++ + KRYDRFR R+MFPI++ G++IGFGGR++ D K
Sbjct: 180 LLTAGMLISN-----------DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT-PK 227
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK NELYGL+E K VLI EGYMDV+ L+QFG VA LGT+
Sbjct: 228 YLNSPETPIFHKGNELYGLYELKQRYRDPDKVLIVEGYMDVVALAQFGVDYAVASLGTST 287
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T+ + +L +I +DGD+AG AA RALE L ++F+FLP DPDS
Sbjct: 288 TAEQFQLLLRSAKEVICCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAEDPDSM 347
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYN 271
+RK G F ++ A++L +F + + Y
Sbjct: 348 VRKIGKDAFETLMVSAIALPEFLFDTLATKYG 379
>gi|389799334|ref|ZP_10202331.1| DNA primase [Rhodanobacter sp. 116-2]
gi|388442899|gb|EIL99060.1| DNA primase [Rhodanobacter sp. 116-2]
Length = 595
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 190/378 (50%), Gaps = 45/378 (11%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDY-NNINTLASSGL 65
+Y+ +L + +A + +KRGL+ E I RF LG+AP ++ + K + + L +G+
Sbjct: 124 WYEGELPRNADAQAYCRKRGLDAETIRRFRLGWAPAGYDGVIKALGNTPRRMELLNEAGM 183
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA------- 118
V E+ +YDRFR R+MFPI + G++I FGGR+I+ S E
Sbjct: 184 VASS-----------ERGSKYDRFRERLMFPILDRRGRVIAFGGRIIERSGEGSPAPDAR 232
Query: 119 ----------KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGF 168
KY+NSPETPLFHK EL+ L++ K A +++ EGYMDVI L Q G
Sbjct: 233 TQDARKSDGPKYLNSPETPLFHKGRELFALWQVKQANPTLARIMVVEGYMDVIALHQAGL 292
Query: 169 LQTVAILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFL 228
VA LGTA T H + + ++F FDGD+AGR AA +ALE L D + FL
Sbjct: 293 PIAVATLGTATTPEHTEVLFRAAPDVVFCFDGDRAGRAAAWKALESALPRLRDGRQAYFL 352
Query: 229 FLPDKYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYL 288
FLPD DPDS +RK G F +++ +AM L +F E+ + ++ ++ + L
Sbjct: 353 FLPDGEDPDSLVRKEGKAGFEQRIRDAMPLSDYFFNELSHDVDMASLDGRARLAERARPL 412
Query: 289 FKIIPLSSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIM 348
+P + R + L K + + + H+ +++ P ++ ++
Sbjct: 413 IAKLP-DGAFRDLMAQELEK--RSGARAV-----LQADPAAHRAMQR----PTAVQRSLV 460
Query: 349 K----LLISYPSLINEIN 362
+ LL++ P + +++
Sbjct: 461 RSAISLLLAQPGMADQVE 478
>gi|403674814|ref|ZP_10937039.1| DNA primase [Acinetobacter sp. NCTC 10304]
Length = 621
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 189/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S++A N+ K+RGL+++ I + LGYAP +W L K F +I L G
Sbjct: 172 AQFYEHQLPTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 229
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 230 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 278
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 279 DSEVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 336
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 337 NILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 396
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F K + +A L F + +++ T + + L +++P S R+
Sbjct: 397 VENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 452
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ I +L+ +P L
Sbjct: 453 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAIA-ILMHHPFL 500
>gi|184157112|ref|YP_001845451.1| DNA primase [Acinetobacter baumannii ACICU]
gi|260555733|ref|ZP_05827953.1| DNA primase [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|332876321|ref|ZP_08444094.1| DNA primase [Acinetobacter baumannii 6014059]
gi|384130790|ref|YP_005513402.1| DNA primase [Acinetobacter baumannii 1656-2]
gi|384142079|ref|YP_005524789.1| DNA primase [Acinetobacter baumannii MDR-ZJ06]
gi|385236380|ref|YP_005797719.1| DNA primase [Acinetobacter baumannii TCDC-AB0715]
gi|387124974|ref|YP_006290856.1| DNA primase [Acinetobacter baumannii MDR-TJ]
gi|407931718|ref|YP_006847361.1| DNA primase [Acinetobacter baumannii TYTH-1]
gi|416145443|ref|ZP_11600482.1| DNA primase [Acinetobacter baumannii AB210]
gi|417545973|ref|ZP_12197059.1| putative DNA primase [Acinetobacter baumannii OIFC032]
gi|417570984|ref|ZP_12221841.1| putative DNA primase [Acinetobacter baumannii OIFC189]
gi|417576710|ref|ZP_12227555.1| putative DNA primase [Acinetobacter baumannii Naval-17]
gi|417870581|ref|ZP_12515536.1| DNA primase [Acinetobacter baumannii ABNIH1]
gi|417872512|ref|ZP_12517413.1| DNA primase [Acinetobacter baumannii ABNIH2]
gi|417876911|ref|ZP_12521659.1| DNA primase [Acinetobacter baumannii ABNIH3]
gi|417882191|ref|ZP_12526498.1| DNA primase [Acinetobacter baumannii ABNIH4]
gi|421205071|ref|ZP_15662174.1| DNA primase [Acinetobacter baumannii AC12]
gi|421535886|ref|ZP_15982142.1| DNA primase [Acinetobacter baumannii AC30]
gi|421628010|ref|ZP_16068796.1| putative DNA primase [Acinetobacter baumannii OIFC180]
gi|421650754|ref|ZP_16091127.1| putative DNA primase [Acinetobacter baumannii OIFC0162]
gi|421655776|ref|ZP_16096090.1| putative DNA primase [Acinetobacter baumannii Naval-72]
gi|421663722|ref|ZP_16103866.1| putative DNA primase [Acinetobacter baumannii OIFC110]
gi|421665908|ref|ZP_16106007.1| putative DNA primase [Acinetobacter baumannii OIFC087]
gi|421670379|ref|ZP_16110377.1| putative DNA primase [Acinetobacter baumannii OIFC099]
gi|421675254|ref|ZP_16115179.1| putative DNA primase [Acinetobacter baumannii OIFC065]
gi|421692759|ref|ZP_16132409.1| putative DNA primase [Acinetobacter baumannii IS-116]
gi|421696432|ref|ZP_16136018.1| putative DNA primase [Acinetobacter baumannii WC-692]
gi|421701937|ref|ZP_16141423.1| DNA primase [Acinetobacter baumannii ZWS1122]
gi|421706267|ref|ZP_16145684.1| DNA primase [Acinetobacter baumannii ZWS1219]
gi|421793003|ref|ZP_16229141.1| putative DNA primase [Acinetobacter baumannii Naval-2]
gi|424053454|ref|ZP_17790986.1| DNA primase [Acinetobacter baumannii Ab11111]
gi|424062889|ref|ZP_17800374.1| DNA primase [Acinetobacter baumannii Ab44444]
gi|425747485|ref|ZP_18865488.1| putative DNA primase [Acinetobacter baumannii WC-348]
gi|425752674|ref|ZP_18870581.1| putative DNA primase [Acinetobacter baumannii Naval-113]
gi|445402009|ref|ZP_21430482.1| putative DNA primase [Acinetobacter baumannii Naval-57]
gi|445457559|ref|ZP_21446547.1| putative DNA primase [Acinetobacter baumannii OIFC047]
gi|445472698|ref|ZP_21452658.1| putative DNA primase [Acinetobacter baumannii OIFC338]
gi|445480442|ref|ZP_21455517.1| putative DNA primase [Acinetobacter baumannii Naval-78]
gi|183208706|gb|ACC56104.1| DNA primase (bacterial type) [Acinetobacter baumannii ACICU]
gi|260410644|gb|EEX03942.1| DNA primase [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|322507010|gb|ADX02464.1| DNA primase [Acinetobacter baumannii 1656-2]
gi|323516878|gb|ADX91259.1| DNA primase [Acinetobacter baumannii TCDC-AB0715]
gi|332735472|gb|EGJ66526.1| DNA primase [Acinetobacter baumannii 6014059]
gi|333366989|gb|EGK49003.1| DNA primase [Acinetobacter baumannii AB210]
gi|342227323|gb|EGT92257.1| DNA primase [Acinetobacter baumannii ABNIH1]
gi|342233565|gb|EGT98284.1| DNA primase [Acinetobacter baumannii ABNIH2]
gi|342236901|gb|EGU01400.1| DNA primase [Acinetobacter baumannii ABNIH3]
gi|342238169|gb|EGU02604.1| DNA primase [Acinetobacter baumannii ABNIH4]
gi|347592572|gb|AEP05293.1| DNA primase [Acinetobacter baumannii MDR-ZJ06]
gi|385879466|gb|AFI96561.1| DNA primase [Acinetobacter baumannii MDR-TJ]
gi|395551432|gb|EJG17441.1| putative DNA primase [Acinetobacter baumannii OIFC189]
gi|395569931|gb|EJG30593.1| putative DNA primase [Acinetobacter baumannii Naval-17]
gi|398325417|gb|EJN41592.1| DNA primase [Acinetobacter baumannii AC12]
gi|400383861|gb|EJP42539.1| putative DNA primase [Acinetobacter baumannii OIFC032]
gi|404559404|gb|EKA64661.1| putative DNA primase [Acinetobacter baumannii IS-116]
gi|404561612|gb|EKA66838.1| putative DNA primase [Acinetobacter baumannii WC-692]
gi|404667592|gb|EKB35505.1| DNA primase [Acinetobacter baumannii Ab11111]
gi|404675062|gb|EKB42784.1| DNA primase [Acinetobacter baumannii Ab44444]
gi|407194424|gb|EKE65565.1| DNA primase [Acinetobacter baumannii ZWS1219]
gi|407195089|gb|EKE66224.1| DNA primase [Acinetobacter baumannii ZWS1122]
gi|407900299|gb|AFU37130.1| DNA primase [Acinetobacter baumannii TYTH-1]
gi|408506799|gb|EKK08503.1| putative DNA primase [Acinetobacter baumannii Naval-72]
gi|408509519|gb|EKK11190.1| putative DNA primase [Acinetobacter baumannii OIFC0162]
gi|408708531|gb|EKL53804.1| putative DNA primase [Acinetobacter baumannii OIFC180]
gi|408713061|gb|EKL58236.1| putative DNA primase [Acinetobacter baumannii OIFC110]
gi|409986170|gb|EKO42367.1| DNA primase [Acinetobacter baumannii AC30]
gi|410382801|gb|EKP35340.1| putative DNA primase [Acinetobacter baumannii OIFC065]
gi|410385058|gb|EKP37553.1| putative DNA primase [Acinetobacter baumannii OIFC099]
gi|410388942|gb|EKP41365.1| putative DNA primase [Acinetobacter baumannii OIFC087]
gi|410398263|gb|EKP50485.1| putative DNA primase [Acinetobacter baumannii Naval-2]
gi|425493403|gb|EKU59635.1| putative DNA primase [Acinetobacter baumannii WC-348]
gi|425498905|gb|EKU64971.1| putative DNA primase [Acinetobacter baumannii Naval-113]
gi|444769903|gb|ELW94068.1| putative DNA primase [Acinetobacter baumannii OIFC338]
gi|444771458|gb|ELW95587.1| putative DNA primase [Acinetobacter baumannii Naval-78]
gi|444776176|gb|ELX00222.1| putative DNA primase [Acinetobacter baumannii OIFC047]
gi|444782816|gb|ELX06691.1| putative DNA primase [Acinetobacter baumannii Naval-57]
gi|452948441|gb|EME53920.1| DNA primase [Acinetobacter baumannii MSP4-16]
Length = 621
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 189/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S++A N+ K+RGL+++ I + LGYAP +W L K F +I L G
Sbjct: 172 AQFYEHQLPTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 229
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 230 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 278
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 279 DSEVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 336
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 337 NILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 396
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F K + +A L F + +++ T + + L +++P S R+
Sbjct: 397 VENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 452
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ I +L+ +P L
Sbjct: 453 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAIA-ILMHHPFL 500
>gi|319897951|ref|YP_004136148.1| DNA primase [Haemophilus influenzae F3031]
gi|317433457|emb|CBY81840.1| DNA primase [Haemophilus influenzae F3031]
Length = 593
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 204/369 (55%), Gaps = 25/369 (6%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M+ + FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 123 MLEIATFYQNQLPLNTQAQEYLQQRGLSAEIIERFQIGFVPNAMDTVLRKF----GVNRE 178
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY
Sbjct: 179 EQQKLIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKY 231
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPET +HK ELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ T
Sbjct: 232 LNSPETITYHKGKELYGLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTT 291
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
S I+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YI
Sbjct: 292 SEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYI 351
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
R++G + F + + A SL +F + + T + K L IP LR
Sbjct: 352 RQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP-GEMLRL 410
Query: 301 KIISSLSKIIKV-SFNEINNLF-----KINTSS-IKHKTIEKKNIQPICIEYQIMKLLIS 353
+ + L++ + + ++ NL + NT + H I+K ++ ++ LL+
Sbjct: 411 SLRNILAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPMR------MVISLLLQ 464
Query: 354 YPSLINEIN 362
P L+ ++
Sbjct: 465 NPELVKRMS 473
>gi|445487623|ref|ZP_21457894.1| putative DNA primase [Acinetobacter baumannii AA-014]
gi|444768513|gb|ELW92728.1| putative DNA primase [Acinetobacter baumannii AA-014]
Length = 621
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 189/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S++A N+ K+RGL+++ I + LGYAP +W L K F +I L G
Sbjct: 172 AQFYEHQLPTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 229
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 230 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 278
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 279 DSEVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 336
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 337 NILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 396
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F K + +A L F + +++ T + + L +++P S R+
Sbjct: 397 VENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 452
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ I +L+ +P L
Sbjct: 453 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAIA-ILMHHPFL 500
>gi|145638552|ref|ZP_01794161.1| DNA primase [Haemophilus influenzae PittII]
gi|145272147|gb|EDK12055.1| DNA primase [Haemophilus influenzae PittII]
gi|309750057|gb|ADO80041.1| DNA primase [Haemophilus influenzae R2866]
Length = 593
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 198/364 (54%), Gaps = 23/364 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 ATFYQNQLPLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK ELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGKELYGLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP---LSSSLRFK 301
+ F + + A SL +F + + T + K L IP L SLR
Sbjct: 356 KEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIPGEMLRLSLRNM 415
Query: 302 IISSLSKIIKVSFNEI--NNLFKINTSS-IKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+ L + + L + NT + H I+K ++ ++ LL+ P L+
Sbjct: 416 LAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPMR------MVISLLLQNPELV 469
Query: 359 NEIN 362
++
Sbjct: 470 KRMS 473
>gi|378696728|ref|YP_005178686.1| DNA primase [Haemophilus influenzae 10810]
gi|301169247|emb|CBW28844.1| DNA primase [Haemophilus influenzae 10810]
gi|740008|prf||2004290A primase
Length = 593
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 198/364 (54%), Gaps = 23/364 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 ATFYQNQLPLNSQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK ELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGKELYGLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP---LSSSLRFK 301
+ F + + A SL +F + + T + K L IP L SLR
Sbjct: 356 KEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIPGEMLRLSLRNM 415
Query: 302 IISSLSKIIKVSFNEI--NNLFKINTSS-IKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+ L + + L + NT + H I+K ++ ++ LL+ P L+
Sbjct: 416 LAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPMR------MVISLLLQNPELV 469
Query: 359 NEIN 362
++
Sbjct: 470 KRMS 473
>gi|145637427|ref|ZP_01793086.1| DNA primase [Haemophilus influenzae PittHH]
gi|145269373|gb|EDK09317.1| DNA primase [Haemophilus influenzae PittHH]
Length = 593
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 198/364 (54%), Gaps = 23/364 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 ATFYQNQLPLNSQAQEYLQQRGLSAEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK ELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGKELYGLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP---LSSSLRFK 301
+ F + + A SL +F + + T + K L IP L SLR
Sbjct: 356 KEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIPGEMLRLSLRNM 415
Query: 302 IISSLSKIIKVSFNEI--NNLFKINTSS-IKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+ L + + L + NT + H I+K ++ ++ LL+ P L+
Sbjct: 416 LAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPMR------MVISLLLQNPELV 469
Query: 359 NEIN 362
++
Sbjct: 470 KRMS 473
>gi|16272476|ref|NP_438690.1| DNA primase [Haemophilus influenzae Rd KW20]
gi|1172619|sp|Q08346.1|PRIM_HAEIN RecName: Full=DNA primase
gi|1573516|gb|AAC22189.1| DNA primase (dnaG) [Haemophilus influenzae Rd KW20]
Length = 593
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 203/365 (55%), Gaps = 25/365 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 ATFYQNQLPLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK ELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGKELYGLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ IL T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD +PD+YIR++G
Sbjct: 296 QLILRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEEPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + A SL +F + + T + K L IP LR + +
Sbjct: 356 KEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP-GEMLRLSLRN 414
Query: 305 SLSKIIKV-SFNEINNLF-----KINTSS-IKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
L++ + + ++ NL + NT + H I+K ++ ++ LL+ P L
Sbjct: 415 MLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPMR------MVISLLMQNPEL 468
Query: 358 INEIN 362
+ ++
Sbjct: 469 VKRMS 473
>gi|169634099|ref|YP_001707835.1| DNA primase [Acinetobacter baumannii SDF]
gi|169152891|emb|CAP01929.1| DNA primase [Acinetobacter baumannii]
Length = 621
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 189/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S++A N+ K+RGL+++ I + LGYAP +W L K F +I L G
Sbjct: 172 AQFYEHQLPTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 229
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 230 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 278
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 279 DSEVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 336
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 337 NILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 396
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F K + +A L F + +++ T + + L +++P S R+
Sbjct: 397 VENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 452
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ I +L+ +P L
Sbjct: 453 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAIA-ILMHHPFL 500
>gi|68249129|ref|YP_248241.1| DNA primase [Haemophilus influenzae 86-028NP]
gi|145635387|ref|ZP_01791089.1| DNA primase [Haemophilus influenzae PittAA]
gi|148825194|ref|YP_001289947.1| DNA primase [Haemophilus influenzae PittEE]
gi|68057328|gb|AAX87581.1| DNA primase [Haemophilus influenzae 86-028NP]
gi|145267393|gb|EDK07395.1| DNA primase [Haemophilus influenzae PittAA]
gi|148715354|gb|ABQ97564.1| DNA primase [Haemophilus influenzae PittEE]
Length = 593
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 198/364 (54%), Gaps = 23/364 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 ATFYQNQLPLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK ELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGKELYGLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP---LSSSLRFK 301
+ F + + A SL +F + + T + K L IP L SLR
Sbjct: 356 KEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIPGEMLRLSLRNM 415
Query: 302 IISSLSKIIKVSFNEI--NNLFKINTSS-IKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+ L + + L + NT + H I+K ++ ++ LL+ P L+
Sbjct: 416 LAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPMR------MVISLLLQNPELV 469
Query: 359 NEIN 362
++
Sbjct: 470 KRMS 473
>gi|113971242|ref|YP_735035.1| DNA primase [Shewanella sp. MR-4]
gi|113885926|gb|ABI39978.1| DNA primase [Shewanella sp. MR-4]
Length = 574
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 162/275 (58%), Gaps = 16/275 (5%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M AS F++ QL+ ++ I++L RGL+++I+ F +G+AP+ W+ L + +
Sbjct: 117 MEEASRFFQTQLRQHQDKQKVIDYLTYRGLSDDIVEHFGIGFAPDGWDGLLSRYRHSQDA 176
Query: 58 -NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ L ++G+++ + KRYDRFR R+MFPI++ G++IGFGGR++ D
Sbjct: 177 QDKLLTTGMLISN-----------DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT 225
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPETP+FHK NELYGL+E K VLI EGYMDV+ L+Q+G VA LG
Sbjct: 226 -PKYLNSPETPIFHKGNELYGLYELKQRHRDPDKVLIVEGYMDVVALAQYGVDFAVASLG 284
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
T+ T+ + +L +I +DGD+AG AA RALE L ++F+FLP DP
Sbjct: 285 TSTTAEQFQLLLRSAKEVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSEDP 344
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYN 271
DS +RK G F + + A++L +F + + +
Sbjct: 345 DSMVRKIGKDAFEQMMESAITLPEFLFDTLATKFG 379
>gi|169796976|ref|YP_001714769.1| DNA primase [Acinetobacter baumannii AYE]
gi|213156618|ref|YP_002318280.1| DNA primase [Acinetobacter baumannii AB0057]
gi|215484437|ref|YP_002326670.1| DNA primase [Acinetobacter baumannii AB307-0294]
gi|301346837|ref|ZP_07227578.1| DNA primase [Acinetobacter baumannii AB056]
gi|301511993|ref|ZP_07237230.1| DNA primase [Acinetobacter baumannii AB058]
gi|301594461|ref|ZP_07239469.1| DNA primase [Acinetobacter baumannii AB059]
gi|332855564|ref|ZP_08435938.1| DNA primase [Acinetobacter baumannii 6013150]
gi|332868377|ref|ZP_08438123.1| DNA primase [Acinetobacter baumannii 6013113]
gi|417553894|ref|ZP_12204963.1| putative DNA primase [Acinetobacter baumannii Naval-81]
gi|417560607|ref|ZP_12211486.1| putative DNA primase [Acinetobacter baumannii OIFC137]
gi|417572294|ref|ZP_12223148.1| putative DNA primase [Acinetobacter baumannii Canada BC-5]
gi|421200917|ref|ZP_15658076.1| putative DNA primase [Acinetobacter baumannii OIFC109]
gi|421456460|ref|ZP_15905802.1| putative DNA primase [Acinetobacter baumannii IS-123]
gi|421622755|ref|ZP_16063652.1| putative DNA primase [Acinetobacter baumannii OIFC074]
gi|421632707|ref|ZP_16073354.1| putative DNA primase [Acinetobacter baumannii Naval-13]
gi|421642464|ref|ZP_16082980.1| putative DNA primase [Acinetobacter baumannii IS-235]
gi|421649085|ref|ZP_16089481.1| putative DNA primase [Acinetobacter baumannii IS-251]
gi|421659001|ref|ZP_16099227.1| putative DNA primase [Acinetobacter baumannii Naval-83]
gi|421699235|ref|ZP_16138770.1| putative DNA primase [Acinetobacter baumannii IS-58]
gi|421796887|ref|ZP_16232941.1| putative DNA primase [Acinetobacter baumannii Naval-21]
gi|421799032|ref|ZP_16235040.1| putative DNA primase [Acinetobacter baumannii Canada BC1]
gi|421803455|ref|ZP_16239373.1| putative DNA primase [Acinetobacter baumannii WC-A-694]
gi|169149903|emb|CAM87796.1| DNA primase [Acinetobacter baumannii AYE]
gi|213055778|gb|ACJ40680.1| DNA primase [Acinetobacter baumannii AB0057]
gi|213986966|gb|ACJ57265.1| DNA primase [Acinetobacter baumannii AB307-0294]
gi|332727388|gb|EGJ58821.1| DNA primase [Acinetobacter baumannii 6013150]
gi|332733436|gb|EGJ64617.1| DNA primase [Acinetobacter baumannii 6013113]
gi|395523189|gb|EJG11278.1| putative DNA primase [Acinetobacter baumannii OIFC137]
gi|395562949|gb|EJG24602.1| putative DNA primase [Acinetobacter baumannii OIFC109]
gi|400207862|gb|EJO38832.1| putative DNA primase [Acinetobacter baumannii Canada BC-5]
gi|400210888|gb|EJO41852.1| putative DNA primase [Acinetobacter baumannii IS-123]
gi|400390311|gb|EJP57358.1| putative DNA primase [Acinetobacter baumannii Naval-81]
gi|404571862|gb|EKA76911.1| putative DNA primase [Acinetobacter baumannii IS-58]
gi|408513191|gb|EKK14825.1| putative DNA primase [Acinetobacter baumannii IS-235]
gi|408514334|gb|EKK15941.1| putative DNA primase [Acinetobacter baumannii IS-251]
gi|408694311|gb|EKL39884.1| putative DNA primase [Acinetobacter baumannii OIFC074]
gi|408708415|gb|EKL53689.1| putative DNA primase [Acinetobacter baumannii Naval-13]
gi|408708940|gb|EKL54202.1| putative DNA primase [Acinetobacter baumannii Naval-83]
gi|410398120|gb|EKP50346.1| putative DNA primase [Acinetobacter baumannii Naval-21]
gi|410411243|gb|EKP63123.1| putative DNA primase [Acinetobacter baumannii Canada BC1]
gi|410413046|gb|EKP64890.1| putative DNA primase [Acinetobacter baumannii WC-A-694]
Length = 621
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 189/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S++A N+ K+RGL+++ I + LGYAP +W L K F +I L G
Sbjct: 172 AQFYEHQLPTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 229
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 230 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 278
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 279 DSEVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 336
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 337 NILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 396
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F K + +A L F + +++ T + + L +++P S R+
Sbjct: 397 VENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 452
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ I +L+ +P L
Sbjct: 453 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAIA-ILMHHPFL 500
>gi|239501207|ref|ZP_04660517.1| DNA primase [Acinetobacter baumannii AB900]
gi|421677312|ref|ZP_16117205.1| putative DNA primase [Acinetobacter baumannii OIFC111]
gi|410393590|gb|EKP45943.1| putative DNA primase [Acinetobacter baumannii OIFC111]
Length = 621
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 189/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S++A N+ K+RGL+++ I + LGYAP +W L K F +I L G
Sbjct: 172 AQFYEHQLPTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 229
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 230 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 278
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 279 DSEVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 336
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 337 NILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 396
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F K + +A L F + +++ T + + L +++P S R+
Sbjct: 397 VENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 452
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ I +L+ +P L
Sbjct: 453 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAIA-ILMHHPFL 500
>gi|417851247|ref|ZP_12497010.1| DNA primase [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|338219813|gb|EGP05424.1| DNA primase [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
Length = 582
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 157/259 (60%), Gaps = 13/259 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
+ FY+ QL A ++L++RGL+ E+I RF +G+ PN ++A L + + L
Sbjct: 126 AQFYQQQLAQHIPAQSYLQQRGLSPEVISRFQIGFVPNSFDAVLQRFGQQKEDQQKLFDL 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ E+ K +DRFR RIMFPI++ G+ I FGGR++ D + KY+NS
Sbjct: 186 GMLSRS-----------EQGKIFDRFRHRIMFPIRDRRGRTIAFGGRVLGD-EKPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGL+EA A +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 234 PESATYHKGNELYGLYEALQANGSPEMLLVVEGYMDVVALAQFGVDYAVASLGTATTAEQ 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + YT I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS+IR+
Sbjct: 294 IQLLFRYTEQAICCYDGDRAGREAAWRAFENALPYLEDGRQLKFIFLPDGEDPDSFIRQH 353
Query: 244 GYKIFSKKVLEAMSLLQFF 262
G F + + +A+SL +F
Sbjct: 354 GKAGFEQYMQKALSLSEFL 372
>gi|148827723|ref|YP_001292476.1| DNA primase [Haemophilus influenzae PittGG]
gi|148718965|gb|ABR00093.1| DNA primase [Haemophilus influenzae PittGG]
Length = 593
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 202/365 (55%), Gaps = 25/365 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 AKFYQNQLPLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK ELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGKELYGLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + A SL +F + + T + K L IP LR + +
Sbjct: 356 KEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP-GEMLRLSLRN 414
Query: 305 SLSKIIKV-SFNEINNLF-----KINTSS-IKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
L++ + + ++ NL + NT + H I+K ++ ++ LL+ P L
Sbjct: 415 MLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPMR------MVISLLLQNPEL 468
Query: 358 INEIN 362
+ ++
Sbjct: 469 VKRMS 473
>gi|373467178|ref|ZP_09558479.1| DNA primase [Haemophilus sp. oral taxon 851 str. F0397]
gi|371759137|gb|EHO47883.1| DNA primase [Haemophilus sp. oral taxon 851 str. F0397]
Length = 593
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 162/258 (62%), Gaps = 11/258 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 AKFYQSQLPLNTQAQEYLQQRGLSAEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK NELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGNELYGLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLP+ DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPEGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFF 262
+ F + + A SL +F
Sbjct: 356 KEKFEEYIESAQSLSEFM 373
>gi|293609058|ref|ZP_06691361.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829631|gb|EFF87993.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 622
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 191/354 (53%), Gaps = 26/354 (7%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL +S++A N+ K+RGL + I + LGYAP +W L K F +I+ L G
Sbjct: 173 AQFYEQQLPHSQKAKNYFKQRGLTNQTIQFWRLGYAPEDWQHLEKAFP--YDIDGLKQLG 230
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 231 LIRSS-----------DNGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 279
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + KS L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 280 DSEVFHKNQLLYGLYEGRKL--KSSDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 337
Query: 185 KKILFYTNS-IIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
ILF NS I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+
Sbjct: 338 -NILFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRRE 396
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F K + +A L F + +++ T + + L +++P S R+
Sbjct: 397 GLENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY--- 453
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NI ++ I +L+ +P L
Sbjct: 454 -----LLTQSFREKLGLGKRFTPQISHDASLSFNIHTKDEDFAIA-ILMHHPFL 501
>gi|262280061|ref|ZP_06057846.1| DNA primase [Acinetobacter calcoaceticus RUH2202]
gi|262260412|gb|EEY79145.1| DNA primase [Acinetobacter calcoaceticus RUH2202]
Length = 622
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 191/354 (53%), Gaps = 26/354 (7%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL NS++A N+ K+RGL + I + LGYAP +W L K F +I+ L G
Sbjct: 173 AQFYEHQLPNSQKAKNYFKQRGLTNQTIQFWRLGYAPEDWQHLEKAFP--YDIDGLKQLG 230
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 231 LIRSS-----------DNGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 279
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + KS L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 280 DSEVFHKNQLLYGLYEGRKL--KSSDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 337
Query: 185 KKILFYTNS-IIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
ILF NS I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+
Sbjct: 338 -NILFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRRE 396
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F K + ++ L F + +++ T + + L +++P S R+
Sbjct: 397 GLENFQKLLQQSPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY--- 453
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NI ++ I +L+ +P L
Sbjct: 454 -----LLNQSFREKLGLGKRFTPQISHDASLSFNIHTKDEDFAIA-ILMHHPFL 501
>gi|260553981|ref|ZP_05826246.1| DNA primase [Acinetobacter sp. RUH2624]
gi|260404867|gb|EEW98372.1| DNA primase [Acinetobacter sp. RUH2624]
Length = 621
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 189/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S++A N+ K+RGL+++ I + LGYAP +W L K F +I L G
Sbjct: 172 AQFYEHQLPTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 229
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 230 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 278
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E K KS L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 279 DSEVFHKNQLLYGLYEGKKL--KSNDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 336
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 337 NILFKQNNRITIAFDGDIAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 396
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + +A L F + +++ T + + L +++P S R+
Sbjct: 397 LENFQRLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 452
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ + +L+ +P L
Sbjct: 453 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAVA-ILMHHPFL 500
>gi|386312883|ref|YP_006009048.1| DNA primase [Shewanella putrefaciens 200]
gi|319425508|gb|ADV53582.1| DNA primase [Shewanella putrefaciens 200]
Length = 574
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/364 (33%), Positives = 202/364 (55%), Gaps = 27/364 (7%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNN 56
M AS +++ QL+ ++ I++L RGL+++++ F +G+AP+ W+ L + + +
Sbjct: 117 MEEASRYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQDA 176
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ L ++G+++ + KRYDRFR R+MFPI++ G++IGFGGR++ D
Sbjct: 177 QDKLLTAGMLI-----------ANDNGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT 225
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPETP+FHK NELYGL+E K VLI EGYMDV+ L+QFG VA LG
Sbjct: 226 -PKYLNSPETPIFHKGNELYGLYELKQRHRDPDKVLIVEGYMDVVALAQFGVDYAVASLG 284
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
T+ T+ + +L ++ +DGD+AG AA RALE L ++F+FLP DP
Sbjct: 285 TSTTAEQFQLLLRSAKEVVCCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAEDP 344
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS 296
DS +RK G + F + A++L +F + + Y +KS + I +
Sbjct: 345 DSMVRKIGKEAFETLMGSAIALPEFLFDTLATKYG------TDKSNLAKQAFILIEKIQD 398
Query: 297 S-LRFKIISSLSKIIKVSFNEINNLFKINTSSIKH-KTIEKKNIQPICIEYQI-MKLLIS 353
+ L+ ++ +L+ K+ N ++ K S+K KT+ K+ ++ ++ + LL+
Sbjct: 399 TVLQNLLLENLAH--KLGMNSSEDMKKKLGFSVKQTKTVAKQGLKGRGTPLRLAIALLVQ 456
Query: 354 YPSL 357
+P L
Sbjct: 457 HPQL 460
>gi|417823645|ref|ZP_12470237.1| DNA primase [Vibrio cholerae HE48]
gi|340048274|gb|EGR09196.1| DNA primase [Vibrio cholerae HE48]
Length = 591
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/372 (36%), Positives = 214/372 (57%), Gaps = 41/372 (11%)
Query: 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNI 57
M + FY+ QLK +K AI +LK RGL+ EI+ +F +GY +EW+ + + F ++
Sbjct: 127 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 186
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L ++G++++ + +RYDRFRGR+MFPI++ G++IGFGGR I +
Sbjct: 187 DMLVTAGMLIEN-----------DNGRRYDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGT 234
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETP+FHK ELYGL+E A + +L+ EGYMDV+ L+Q+G +VA LGT
Sbjct: 235 PKYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGT 294
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T H++ + TN +I +DGD+AGR AARRA+E L + +KI+K LFLPD DPD
Sbjct: 295 STTGDHLQLLFRQTNHVICCYDGDRAGRDAARRAMENALEFLNANKILKVLFLPDGEDPD 354
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL--- 294
S++RK+G F +++ + SL+ F L EI K D + ++ PL
Sbjct: 355 SFVRKYGKTKFEEEIENSQSLIDFLLTEIK-----KEAPDTDSKRWGTYVATNAAPLLNK 409
Query: 295 --SSSLRFKIISSLSKIIKVSFNE------INNLFKINTSS--IKHKTIEKKNIQPICIE 344
SL+ + L+ + +++ +N+L N++S H+ I++ ++
Sbjct: 410 TTDPSLKAYLWKELT--LGTGWSDFQLQKFLNSLLTTNSNSQPAPHRAIKRTPMR----- 462
Query: 345 YQIMKLLISYPS 356
++ LL+ PS
Sbjct: 463 -DVIALLVQNPS 473
>gi|332288975|ref|YP_004419827.1| DNA primase [Gallibacterium anatis UMN179]
gi|330431871|gb|AEC16930.1| DNA primase [Gallibacterium anatis UMN179]
Length = 596
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/381 (35%), Positives = 197/381 (51%), Gaps = 31/381 (8%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S A +L++RGL+ EII RF +G++ N + LN L +G
Sbjct: 128 AQFYQQQLTQSLPAQAYLQQRGLSAEIIQRFAIGFSTNTNSVLNHFGKTAEERQKLVDTG 187
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
+V YDRFR RIMFPI++ G+ I FGGR++ D + KY+NSP
Sbjct: 188 MVTKSDYGNF-----------YDRFRQRIMFPIRDRRGRTIAFGGRVLGDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
E +HK NELYGL+EA + Y+LI EGYMDV+ L+QFG VA LGTA T I
Sbjct: 236 EMATYHKGNELYGLYEALQQNDNPEYLLIVEGYMDVVALAQFGVTNAVASLGTATTGEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ T II +DGD AGR AA RALE L + D + +KF+FLPD DPD++IR+ G
Sbjct: 296 QIAFRATEQIICCYDGDNAGRSAAWRALENALPHLYDGRQLKFIFLPDNEDPDTFIRQIG 355
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
F + + A + F + ++ +L K L +P +LR + +
Sbjct: 356 KAQFEQFLNMAQPMSDFLFQHLLAQVDLSNKDGRSKLAALAVPLINQVP-GETLRLYLRN 414
Query: 305 SLSKIIKVSFNEINNLFKINTSSI-KHKTIEKKN--------------IQ-PICIEYQIM 348
+L + K+ + L KI + I +HK EK+ +Q P + QI
Sbjct: 415 TLGQ--KLGIVDSIQLEKILPALISEHKAKEKEERLRSTPMRLLIALLVQNPELADKQIT 472
Query: 349 KLLISYPSLINEINSEDMIIF 369
++L+S P ++ ++N + +F
Sbjct: 473 RILLSNPQVLYDLNLPGLALF 493
>gi|410617505|ref|ZP_11328472.1| DNA primase [Glaciecola polaris LMG 21857]
gi|410162959|dbj|GAC32610.1| DNA primase [Glaciecola polaris LMG 21857]
Length = 588
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/280 (39%), Positives = 171/280 (61%), Gaps = 15/280 (5%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M S ++ QLK + + AI++LK+RGL+ E++ F +GYAP EW+A+ F
Sbjct: 122 METVSRYFSQQLKVHADKERAIDYLKRRGLSGEVVKAFGIGYAPTEWDAVLSTF----GR 177
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
+ L+ K+I + + + ++ RIMFPI++ G+I+GFGGR++ D
Sbjct: 178 SPETQEQLLDLKLITQNDNRRRFDFFRE------RIMFPIRDKRGRIVGFGGRVLGDGT- 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK NELYG ++AK A V+I EGYMDV+ L+QF VA LGT
Sbjct: 231 PKYLNSPETRIFHKGNELYGFYQAKQAHRNLPRVMIVEGYMDVVALAQFDIKYAVASLGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T+ HI+ + T+ ++ +DGD+AGR AA RALE L Y D +KFLFLPD DPD
Sbjct: 291 ATTAEHIQMLFRTTSEVVCCYDGDRAGREAAWRALENALPYLKDGVEMKFLFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKK-VLEAMSLLQFFLEEIILNYNLKTIK 276
+ +R+ G + F +K V +++ L +FF + ++ +++ + +
Sbjct: 351 TLVRQIGKEAFEQKLVTDSVPLSKFFFDNLLQRHHIGSAE 390
>gi|377555608|ref|ZP_09785336.1| DNA primase [endosymbiont of Bathymodiolus sp.]
Length = 613
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 184/323 (56%), Gaps = 21/323 (6%)
Query: 5 SDFYKIQLKNSK---EAINFLKKRGLNEEIILRFNLGYA-PNEWNALNKVFLDYNNINTL 60
SDFY Q K S +A+ + K RG+++EI RF LG+A P+ + L +I L
Sbjct: 120 SDFYTQQFKFSPAKDKAVAYAKNRGISDEIAKRFELGFATPSNNDLLLNFEKTQQSITDL 179
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+ GLV +Y YD FR R+MFPI N+ G +I FGGR+ ++ +AKY
Sbjct: 180 KALGLVK------------TGEYGDYDFFRDRLMFPIHNSKGSVIAFGGRVFDNTAKAKY 227
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NS E+P+F KS ELYGL+ A+ + Y+L+ EGYMDV+ L Q G + VA LGTA T
Sbjct: 228 LNSQESPIFAKSRELYGLYHARKYSRQMDYILVVEGYMDVVALHQSGVTKVVATLGTATT 287
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ H+K + TN+I+F FDGD AGR AA +AL++ L ++KFLFLPD DPD+ +
Sbjct: 288 TEHLKTLARTTNTIVFCFDGDDAGRAAAWKALKITLPVVKSGLLVKFLFLPDGEDPDTLV 347
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS--SL 298
+K K F +++ +A L +F + + + T IE +E + +I L + +
Sbjct: 348 KKESAKAFEQRINKAKMLSKFLFDHVKTQVDFNT---IEGKTLFLEKVSALIALVTYDAY 404
Query: 299 RFKIISSLSKIIKVSFNEINNLF 321
+ +++ S+++ S + ++F
Sbjct: 405 QEQLLEGTSQVVGQSIERVKDVF 427
>gi|345429380|ref|YP_004822498.1| DNA primase [Haemophilus parainfluenzae T3T1]
gi|301155441|emb|CBW14907.1| DNA primase [Haemophilus parainfluenzae T3T1]
Length = 594
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/360 (36%), Positives = 205/360 (56%), Gaps = 19/360 (5%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLV 66
FY+ QL + A ++L++RGL+ EII RF +GY PN A++ V + N L
Sbjct: 130 FYQSQLPLNIPAQSYLQQRGLSPEIIDRFQIGYVPN---AMDTVLRQFGK-NREEQKKLF 185
Query: 67 VDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPET 126
++++ ++ V YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSPET
Sbjct: 186 DLGMLSRNDRGNV------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSPET 238
Query: 127 PLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKK 186
+HK NELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I+
Sbjct: 239 ITYHKGNELYGLYEALQINDEPEKLLVVEGYMDVVALAQFGVNYAVASLGTSTTSEQIQL 298
Query: 187 ILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYK 246
+ T +I +DGD+AGR AA RALE L Y D + IKF+FLPD DPD+YIR++G +
Sbjct: 299 LFRSTEQVICCYDGDRAGRDAAWRALENALPYLEDGRQIKFIFLPDGEDPDTYIRQYGKE 358
Query: 247 IFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIISSL 306
F + + +A SL +F + + T + K L + IP LR + + L
Sbjct: 359 KFEEYIDQAQSLTEFLFAHLSPQVDFSTQEGRGKLVALAAPLIRQIP-GDMLRLSLRNML 417
Query: 307 SKIIKV-SFNEINNLF--KINTSSIKHKTIEKK-NIQPICIEYQIMKLLISYPSLINEIN 362
++ + + +++ +L +I + K KT +K P+ + ++ LL+ L+N I+
Sbjct: 418 AQKLGIFDQSQLESLIPNQIGKAEPKPKTPQKTIKKTPMRV---VISLLLQNSQLVNRIS 474
>gi|427425652|ref|ZP_18915736.1| putative DNA primase [Acinetobacter baumannii WC-136]
gi|425697515|gb|EKU67187.1| putative DNA primase [Acinetobacter baumannii WC-136]
Length = 622
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 191/354 (53%), Gaps = 26/354 (7%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL +S++A N+ K+RGL + I + LGYAP +W L K F +I+ L G
Sbjct: 173 AQFYEQQLPHSQKAKNYFKQRGLTNQTIQFWRLGYAPEDWQHLEKAFP--YDIDGLKQLG 230
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 231 LIRSS-----------DNGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 279
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + KS L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 280 DSEVFHKNQLLYGLYEGRKL--KSSDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 337
Query: 185 KKILFYTNS-IIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
ILF NS I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+
Sbjct: 338 -NILFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRRE 396
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F K + +A L F + +++ T + + L +++P S R+
Sbjct: 397 GLENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY--- 453
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NI ++ I +L+ +P L
Sbjct: 454 -----LLTQSFREKLGLGKRFTPQISHDASLSFNIHTKDEDFAIA-ILMHHPFL 501
>gi|109897364|ref|YP_660619.1| DNA primase [Pseudoalteromonas atlantica T6c]
gi|109699645|gb|ABG39565.1| DNA primase [Pseudoalteromonas atlantica T6c]
Length = 588
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/372 (35%), Positives = 203/372 (54%), Gaps = 25/372 (6%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M S ++ QLK + +AI++LKKRGL+ E++ F +GYAP EW+A+ F
Sbjct: 122 METISRYFSQQLKVHSDKDKAIDYLKKRGLSGEVVKAFGIGYAPTEWDAVLSTF----GR 177
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
A L+ K+I + + + ++ RIMFPI++ G+I+GFGGR++ D
Sbjct: 178 TPEAQQQLLDLKLITENDNRRRFDFFRE------RIMFPIRDKRGRIVGFGGRVLGDGT- 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK NELYG ++AK A V+I EGYMDV+ L+QF VA LGT
Sbjct: 231 PKYLNSPETRIFHKGNELYGFYQAKQAHRNLPRVMIVEGYMDVVALAQFDIKYAVASLGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T HI+ + T+ ++ +DGD+AGR AA RALE L Y D +KFLFLPD DPD
Sbjct: 291 ATTPEHIQMLFRTTSEVVCCYDGDRAGREAAWRALENALAYLKDGVEMKFLFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKK-VLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS 296
+ +R+ G + F +K V +++ L +FF + ++ +++ + + K L + I L
Sbjct: 351 TLVRQIGKEAFEQKLVSDSVPLSKFFFDNLLQRHHIGSAEGKAALKAEAMPLIEQI-LGD 409
Query: 297 SLRFKIISSLSKII--KVSFNEINNLFKINTSSIKHK----TIEKKNIQPICIEYQIMKL 350
+ R + S LS + + ++ K N K + K I PI + +++L
Sbjct: 410 NQRAILTSELSTHMGDRNRHRLEQDVAKANQHKAGAKLDFTALNKAKISPIRM---MIRL 466
Query: 351 LISYPSLINEIN 362
L+ P + E
Sbjct: 467 LLDQPGIAIECQ 478
>gi|375133724|ref|YP_004994374.1| DNA primase [Acinetobacter calcoaceticus PHEA-2]
gi|325121169|gb|ADY80692.1| DNA primase [Acinetobacter calcoaceticus PHEA-2]
Length = 622
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 191/354 (53%), Gaps = 26/354 (7%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL +S++A N+ K+RGL + I + LGYAP +W L K F +I+ L G
Sbjct: 173 AQFYEQQLPHSQKAKNYFKQRGLTNQTIQFWRLGYAPEDWQHLEKAFP--YDIDGLKQLG 230
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 231 LIRSS-----------DNGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 279
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + KS L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 280 DSEVFHKNQLLYGLYEGRKL--KSSDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 337
Query: 185 KKILFYTNS-IIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
ILF NS I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+
Sbjct: 338 -NILFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRRE 396
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F K + +A L F + +++ T + + L +++P S R+
Sbjct: 397 GLENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY--- 453
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NI ++ I +L+ +P L
Sbjct: 454 -----LLTQSFREKLGLGKRFTPQISHDASLSFNIHTKDEDFAIA-ILMHHPFL 501
>gi|120599856|ref|YP_964430.1| DNA primase [Shewanella sp. W3-18-1]
gi|146292208|ref|YP_001182632.1| DNA primase [Shewanella putrefaciens CN-32]
gi|120559949|gb|ABM25876.1| DNA primase [Shewanella sp. W3-18-1]
gi|145563898|gb|ABP74833.1| DNA primase [Shewanella putrefaciens CN-32]
Length = 574
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 163/275 (59%), Gaps = 16/275 (5%)
Query: 1 MICASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNN 56
M AS +++ QL+ ++ I++L RGL+++++ F +G+AP+ W+ L + + +
Sbjct: 117 MEEASRYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQDA 176
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ L ++G+++ + KRYDRFR R+MFPI++ G++IGFGGR++ D
Sbjct: 177 QDKLLTAGMLI-----------ANDNGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT 225
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPETP+FHK NELYGL+E K VLI EGYMDV+ L+QFG VA LG
Sbjct: 226 -PKYLNSPETPIFHKGNELYGLYELKQRHRDPDKVLIVEGYMDVVALAQFGVDYAVASLG 284
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
T+ T+ + +L ++ +DGD+AG AA RALE L ++F+FLP DP
Sbjct: 285 TSTTAEQFQLLLRSAKEVVCCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAEDP 344
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYN 271
DS +RK G + F + A++L +F + + Y
Sbjct: 345 DSMVRKIGKEAFETLMGSAIALPEFLFDTLATKYG 379
>gi|152999722|ref|YP_001365403.1| DNA primase [Shewanella baltica OS185]
gi|151364340|gb|ABS07340.1| DNA primase [Shewanella baltica OS185]
Length = 574
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 162/272 (59%), Gaps = 16/272 (5%)
Query: 4 ASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINT 59
AS +++ QL+ ++ I++L RGL+++++ F +G+AP+ W+ L + + + +
Sbjct: 120 ASLYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQDAQDK 179
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L ++G+++ + KRYDRFR R+MFPI++ G++IGFGGR++ D K
Sbjct: 180 LLTAGMLISN-----------DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT-PK 227
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK NELYGL+E K VLI EGYMDV+ L+QFG VA LGT+
Sbjct: 228 YLNSPETPIFHKGNELYGLYELKQRYRDPDKVLIVEGYMDVVALAQFGVDYAVASLGTST 287
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T+ + +L ++ +DGD+AG AA RALE L ++F+FLP DPDS
Sbjct: 288 TAEQFQLLLRSAKEVVCCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAEDPDSM 347
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYN 271
+RK G F ++ A++L +F + + Y
Sbjct: 348 VRKIGKDSFETLMVSAIALPEFLFDTLATKYG 379
>gi|307250748|ref|ZP_07532681.1| DNA primase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306857216|gb|EFM89339.1| DNA primase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
Length = 580
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/356 (33%), Positives = 192/356 (53%), Gaps = 16/356 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
S FY+ L + ++L+ RGL+ EII RF +G+A N ++ L K + + + L +
Sbjct: 127 SRFYQQNLTQDIPSQSYLQSRGLSPEIIARFEIGFAYNSMDSVLRKFGTNRDEVQKLFDT 186
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ ++ YD+FR R+MFPI++ G++I FGGR++ D KY+NS
Sbjct: 187 GMITQNDSGRI-----------YDKFRNRVMFPIRDKRGRVIAFGGRVMGDER-PKYLNS 234
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGLF+A E +++ EGYMDV+ L+QFG VA LGTA T
Sbjct: 235 PESATYHKGNELYGLFQALQQNENPTSLVVVEGYMDVVALAQFGVDNVVASLGTATTGEQ 294
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+++ T +I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS++R
Sbjct: 295 IQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDGEDPDSFVRAQ 354
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F + AMSL F + +I +L + + K L IP LR +
Sbjct: 355 GKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLINRIP-GEMLRVYLR 413
Query: 304 SSLSKIIKV-SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+ L + + + ++ + + +++ K + I+ + ++ LL+ P L+
Sbjct: 414 NILGQKLGILDPAQLEAMLPSRSQAVQKKAVRTPQIKRTPMRL-LIALLLQNPELV 468
>gi|319775547|ref|YP_004138035.1| DNA primase [Haemophilus influenzae F3047]
gi|329122410|ref|ZP_08250997.1| DNA primase [Haemophilus aegyptius ATCC 11116]
gi|317450138|emb|CBY86352.1| DNA primase [Haemophilus influenzae F3047]
gi|327473692|gb|EGF19111.1| DNA primase [Haemophilus aegyptius ATCC 11116]
Length = 593
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 202/365 (55%), Gaps = 25/365 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 ATFYQNQLPLNSQAQEYLQQRGLSAEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK ELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGKELYGLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + A SL +F + + T + K L IP LR + +
Sbjct: 356 KEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP-GEMLRLSLRN 414
Query: 305 SLSKIIKV-SFNEINNLF-----KINTSS-IKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
L++ + + ++ NL + NT + H I+K ++ ++ LL+ P L
Sbjct: 415 ILAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPMR------MVISLLLQNPEL 468
Query: 358 INEIN 362
+ ++
Sbjct: 469 VKRMS 473
>gi|126173384|ref|YP_001049533.1| DNA primase [Shewanella baltica OS155]
gi|386340137|ref|YP_006036503.1| DNA primase [Shewanella baltica OS117]
gi|125996589|gb|ABN60664.1| DNA primase [Shewanella baltica OS155]
gi|334862538|gb|AEH13009.1| DNA primase [Shewanella baltica OS117]
Length = 574
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/272 (38%), Positives = 161/272 (59%), Gaps = 16/272 (5%)
Query: 4 ASDFYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNNINT 59
AS +++ QL+ ++ I++L RGL+++++ F +G+AP+ W+ L + + + +
Sbjct: 120 ASLYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQDAQDK 179
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L ++G+++ + KRYDRFR R+MFPI++ G++IGFGGR++ D K
Sbjct: 180 LLTAGMLISN-----------DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGT-PK 227
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK NELYGL E K VLI EGYMDV+ L+QFG VA LGT+
Sbjct: 228 YLNSPETPIFHKGNELYGLHELKQRYRDPDKVLIVEGYMDVVALAQFGVDYAVASLGTST 287
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T+ + +L +I +DGD+AG AA RALE L ++F+FLP DPDS
Sbjct: 288 TAEQFQLLLRSAKEVICCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAEDPDSM 347
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYN 271
+RK G F ++ A++L +F + + Y
Sbjct: 348 VRKIGKDAFETLMVSAIALPEFLFDTLATKYG 379
>gi|319760204|ref|YP_004124142.1| DNA primase [Candidatus Blochmannia vafer str. BVAF]
gi|318038918|gb|ADV33468.1| DNA primase [Candidatus Blochmannia vafer str. BVAF]
Length = 592
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 145/394 (36%), Positives = 212/394 (53%), Gaps = 21/394 (5%)
Query: 4 ASDFYKIQLKNSKEAI--NFLKKRGLNEEIILRFNLGYAPNEWNALNK-VFLDYNNINTL 60
S++Y+ L N K A +L+ RGL I FN+G+AP WN + + + L+ N +
Sbjct: 122 VSNYYQNNLINKKYAYAHKYLQNRGLTTNSIANFNIGFAPMGWNNIAQNLNLNTYNSKLI 181
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIK-DSNEAK 119
SG+ V+ K +YDRFR RI+FP+KN +G+IIGFGGR I+ + + K
Sbjct: 182 TQSGIYVEN-----------GKKNKYDRFRERIIFPMKNQEGKIIGFGGRTIQHNPKQPK 230
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSP+T +F K+ LYG +E + Y+L+ EGYMDVI L+QFG V+ LGT+
Sbjct: 231 YLNSPDTTIFKKNQYLYGFYETCKKHKNIPYILLVEGYMDVIILTQFGINYVVSTLGTSM 290
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
+ HI+ I TN II +DGD AG++AA R L L Y TD+K I F+FLP++ DPD+
Sbjct: 291 SVYHIRLIYSVTNQIICCYDGDNAGKKAAWRTLNTVLPYLTDNKEISFMFLPNQEDPDTL 350
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR 299
IRK G F K++ +A SL F E + NL T++ K I + IP L+
Sbjct: 351 IRKIGKDSFLKQISKAQSLSNFLFETLSKKINLHTLEGRVKLSSLILPMINQIP-GQILQ 409
Query: 300 FKIISSLSKIIKV-SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+ LSKII + +++ L K +I T K NI IE+ ++ LLI P L
Sbjct: 410 LCLQQKLSKIIGILDDSKLQQLLKKPKKNIP-LTQYKHNIT-YNIEHILIGLLIQNPKLA 467
Query: 359 NEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKN 392
+ + + N +K+F L+ + N
Sbjct: 468 KLVPTIQGL--ETLKHNNIKIFINLVKLCKFYPN 499
>gi|419801430|ref|ZP_14326657.1| DNA primase [Haemophilus parainfluenzae HK262]
gi|419846253|ref|ZP_14369506.1| DNA primase [Haemophilus parainfluenzae HK2019]
gi|385193644|gb|EIF41001.1| DNA primase [Haemophilus parainfluenzae HK262]
gi|386413993|gb|EIJ28562.1| DNA primase [Haemophilus parainfluenzae HK2019]
Length = 594
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 207/362 (57%), Gaps = 19/362 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + A ++L++RGL+ EII RF +GY PN A++ V + N
Sbjct: 128 ASFYQAQLPLNIPAQSYLQQRGLSPEIIDRFQIGYVPN---AMDTVLRQFGK-NREEQKK 183
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L ++++ ++ V YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 184 LFDLGMLSRNDRGNV------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 236
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK NELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 237 ETITYHKGNELYGLYEALQINDEPEKLLVVEGYMDVVALAQFGVNYAVASLGTSTTSEQI 296
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + T +I +DGD+AGR AA RAL+ L Y D + IKF+FLPD DPD+YIR++G
Sbjct: 297 QLLFRSTEQVICCYDGDRAGRDAAWRALKNALPYLEDGRQIKFIFLPDGEDPDTYIRQYG 356
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + +A SL +F + + T + K L + IP LR + +
Sbjct: 357 KEKFEEYIDQAQSLTEFLFTHLSPQVDFSTQEGRGKLVALAAPLIRQIP-GDMLRLSLRN 415
Query: 305 SLSKIIKV-SFNEINNLF--KINTSSIKHKTIEKK-NIQPICIEYQIMKLLISYPSLINE 360
L++ + + +++ +L +I+ + K KT +K P+ + ++ LL+ L+N
Sbjct: 416 MLAQKLGIFDQSQLESLIPNQIDKAEPKPKTSQKTIKKTPMRV---VISLLLQNSQLVNR 472
Query: 361 IN 362
I+
Sbjct: 473 IS 474
>gi|303250976|ref|ZP_07337165.1| DNA primase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307253123|ref|ZP_07535004.1| DNA primase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|302650193|gb|EFL80360.1| DNA primase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306859417|gb|EFM91449.1| DNA primase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
Length = 580
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 159/271 (58%), Gaps = 13/271 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
S FY+ L + ++L+ RGL+ EII RF +G+A N ++ L K + + + L +
Sbjct: 127 SRFYQQNLTQDIPSQSYLQSRGLSPEIIARFEIGFAYNSMDSVLRKFGTNRDEVQKLFDT 186
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ ++ YD+FR R+MFPI++ G++I FGGR++ D KY+NS
Sbjct: 187 GMITQNDSGRI-----------YDKFRNRVMFPIRDKRGRVIAFGGRVMGDER-PKYLNS 234
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGLF+A E +++ EGYMDV+ L+QFG VA LGTA T
Sbjct: 235 PESATYHKGNELYGLFQALQQNENPTSLVVVEGYMDVVALAQFGVDNVVASLGTATTGEQ 294
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+++ T +I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS++R
Sbjct: 295 IQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDGEDPDSFVRAQ 354
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F + AMSL F + +I +L +
Sbjct: 355 GKQGFEAYLQNAMSLSDFLFDSLIAQVDLSS 385
>gi|445432839|ref|ZP_21439512.1| putative DNA primase [Acinetobacter baumannii OIFC021]
gi|444758177|gb|ELW82679.1| putative DNA primase [Acinetobacter baumannii OIFC021]
Length = 621
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/353 (34%), Positives = 189/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S++A N+ K+RGL+++ I + LGYAP +W L K F +I L G
Sbjct: 172 AQFYEHQLPTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 229
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 230 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 278
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + KS L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 279 DSEVFHKNQLLYGLYEGRKL--KSNDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 336
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 337 NILFKQNNRITIAFDGDIAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 396
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + +A L F + +++ T + + L +++P S R+
Sbjct: 397 LENFQRLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 452
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ + +L+ +P L
Sbjct: 453 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAVA-ILMHHPFL 500
>gi|424056712|ref|ZP_17794229.1| DNA primase [Acinetobacter nosocomialis Ab22222]
gi|425740205|ref|ZP_18858379.1| putative DNA primase [Acinetobacter baumannii WC-487]
gi|407440245|gb|EKF46762.1| DNA primase [Acinetobacter nosocomialis Ab22222]
gi|425494972|gb|EKU61162.1| putative DNA primase [Acinetobacter baumannii WC-487]
Length = 621
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/353 (34%), Positives = 189/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S++A N+ K+RGL+++ I + LGYAP +W L K F +I L G
Sbjct: 172 AQFYEHQLPTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 229
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 230 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 278
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + KS L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 279 DSEVFHKNQLLYGLYEGRKL--KSNDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 336
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 337 NILFKQNNRITIAFDGDIAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 396
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + +A L F + +++ T + + L +++P S R+
Sbjct: 397 LENFQRLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 452
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ + +L+ +P L
Sbjct: 453 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAVA-ILMHHPFL 500
>gi|416894493|ref|ZP_11925081.1| DNA primase [Aggregatibacter aphrophilus ATCC 33389]
gi|347813455|gb|EGY30128.1| DNA primase [Aggregatibacter aphrophilus ATCC 33389]
Length = 598
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/350 (37%), Positives = 193/350 (55%), Gaps = 18/350 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + A ++L++RGL+ EII RF +GY PN A++ V+ + T
Sbjct: 128 ATFYQQQLPLNIPAQSYLQQRGLSAEIIERFQIGYVPN---AMDTVYRQFGK--TREEQQ 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
+ D + N I YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 KLFDLGMLSRNDRGNI-----YDKFRNRIMFPIRDRRGRTVAFGGRVLTDE-KPKYLNSP 236
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK +ELYGLFEA A + +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 237 ETVTYHKGSELYGLFEALQADDSPQKLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 296
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + T +I +DGD AGR AA RALE L Y D +KF+FLPD DPD++IR+FG
Sbjct: 297 QLLFRSTEQVICCYDGDHAGRDAAWRALENALPYLEDGHQLKFIFLPDGEDPDTFIRQFG 356
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + A SL +F + + + + K L K IP LR + +
Sbjct: 357 KEGFEEYLNNAQSLSEFLFAHLTPQVDFSSKEGKNKLAALAIPLIKQIP-GDVLRLNLRN 415
Query: 305 SLSKIIKV-SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
+L+K + + ++ +L + KT QPI + M++LI+
Sbjct: 416 TLAKKLGILDPTQLESLI-----PNQQKTENTPTAQPIQFKRTPMRVLIA 460
>gi|307246389|ref|ZP_07528465.1| DNA primase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307255375|ref|ZP_07537185.1| DNA primase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307259825|ref|ZP_07541543.1| DNA primase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|306852722|gb|EFM84951.1| DNA primase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306861684|gb|EFM93668.1| DNA primase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306866123|gb|EFM97993.1| DNA primase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
Length = 580
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/350 (35%), Positives = 192/350 (54%), Gaps = 18/350 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
S FY+ L + ++L+ RGL+ EII RF +G+A N ++ L K + + + L +
Sbjct: 127 SRFYQQNLTQDIPSQSYLQSRGLSPEIIARFEIGFAYNSMDSVLRKFGTNRDEVQKLFDT 186
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ ++ YD+FR R+MFPI++ G++I FGGR++ D KY+NS
Sbjct: 187 GMITQNDSGRI-----------YDKFRNRVMFPIRDKRGRVIAFGGRVMGDER-PKYLNS 234
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGLF+A E +++ EGYMDV+ L+QFG VA LGTA T
Sbjct: 235 PESATYHKGNELYGLFQALQQNENPTSLVVVEGYMDVVALAQFGVDNVVASLGTATTGEQ 294
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+++ T +I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS++R
Sbjct: 295 IQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDGEDPDSFVRAQ 354
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F + AMSL F + +I +L + + K L IP LR +
Sbjct: 355 GKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLINRIP-GEMLRVYLR 413
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
+ L + K+ + L + S + + ++KK ++ I+ M+LLI+
Sbjct: 414 NILGQ--KLGILDPAQLEAMLPS--RSQAVQKKAVRTPQIKRTPMRLLIA 459
>gi|421787463|ref|ZP_16223815.1| putative DNA primase [Acinetobacter baumannii Naval-82]
gi|410406988|gb|EKP58977.1| putative DNA primase [Acinetobacter baumannii Naval-82]
Length = 621
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 122/353 (34%), Positives = 189/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S++A N+ K+RGL+++ I + LGYAP +W L K F +I L G
Sbjct: 172 AQFYEHQLPTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 229
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 230 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 278
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + KS L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 279 DSEVFHKNQLLYGLYEGRKL--KSNDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 336
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 337 NILFKQNNRITIAFDGDIAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 396
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + +A L F + +++ T + + L +++P S R+
Sbjct: 397 LENFQRLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 452
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ + +L+ +P L
Sbjct: 453 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAVA-ILMHHPFL 500
>gi|325576584|ref|ZP_08147302.1| DNA primase [Haemophilus parainfluenzae ATCC 33392]
gi|325161147|gb|EGC73262.1| DNA primase [Haemophilus parainfluenzae ATCC 33392]
Length = 628
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 131/362 (36%), Positives = 207/362 (57%), Gaps = 19/362 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + A +L++RGL+ EII RF +GY PN A++ V + N
Sbjct: 162 ASFYQAQLPLNIPAQIYLQQRGLSPEIIERFQIGYVPN---AMDTVLRQFGK-NREEQKK 217
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L ++++ ++ V YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 218 LFDLGMLSRNDRGNV------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 270
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK NELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 271 ETITYHKGNELYGLYEALQINDEPEKLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 330
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + T +I +DGD+AGR AA RALE L Y D + IKF+FLPD DPD+YIR++G
Sbjct: 331 QLLFRSTEQVICCYDGDRAGRDAAWRALENSLPYLEDGRQIKFIFLPDGEDPDTYIRQYG 390
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + +A SL +F + + T + K L + IP LR + +
Sbjct: 391 KEKFEEYIDQAQSLTEFLFAHLSPQVDFSTQEGRGKLVALAVPLIRQIP-GDMLRLSLRN 449
Query: 305 SLSKIIKV-SFNEINNLF--KINTSSIKHKTIEKK-NIQPICIEYQIMKLLISYPSLINE 360
L++ + + +++ +L +I+ ++ K KT +K P+ + ++ LL+ L+N
Sbjct: 450 MLAQKLGIFDQSQLESLIPNQIDKAAPKPKTPQKTIKKTPMRV---VISLLLQNSQLVNR 506
Query: 361 IN 362
I+
Sbjct: 507 IS 508
>gi|410643650|ref|ZP_11354143.1| DNA primase [Glaciecola chathamensis S18K6]
gi|410136730|dbj|GAC12330.1| DNA primase [Glaciecola chathamensis S18K6]
Length = 588
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 180/311 (57%), Gaps = 16/311 (5%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M S ++ QLK + AI++LKKRGL+ E++ F +GYAP EW+A+ F
Sbjct: 122 METISRYFSHQLKVHSDKDRAIDYLKKRGLSGEVVKAFGIGYAPTEWDAVLSTF----GR 177
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
A L+ K+I + + + ++ RIMFPI++ G+I+GFGGR++ D
Sbjct: 178 TPEAQQQLLDLKLITENDNRRRFDFFRE------RIMFPIRDKRGRIVGFGGRVLGDGT- 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK NELYG ++AK A ++I EGYMDV+ L+QF VA LGT
Sbjct: 231 PKYLNSPETRIFHKGNELYGFYQAKQAHRNLPRIMIVEGYMDVVALAQFDIKYAVASLGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T HI+ + T+ ++ +DGD+AGR AA RALE L Y D +KFLFLPD DPD
Sbjct: 291 ATTPEHIQMLFRTTSEVVCCYDGDRAGREAAWRALENALAYLKDGVEMKFLFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKK-VLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS 296
+ +R+ G + F +K V +++ L +FF + ++ +++ + + K L + I L
Sbjct: 351 TLVRQIGKEAFEQKLVSDSVPLSKFFFDNLLQRHHIGSAEGKAALKAEAMPLIEQI-LGE 409
Query: 297 SLRFKIISSLS 307
+ R + S LS
Sbjct: 410 NQRAILTSELS 420
>gi|229846615|ref|ZP_04466723.1| DNA primase [Haemophilus influenzae 7P49H1]
gi|229810708|gb|EEP46426.1| DNA primase [Haemophilus influenzae 7P49H1]
Length = 593
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 124/365 (33%), Positives = 202/365 (55%), Gaps = 25/365 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 ATFYQNQLPLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK ELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGKELYGLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + A SL +F + + + + K L IP LR + +
Sbjct: 356 KEKFEEYIESAQSLSEFMFAHLSPQVDFSSKEGRGKLVALAAPLIHQIP-GEMLRLSLRN 414
Query: 305 SLSKIIKV-SFNEINNLF-----KINTSS-IKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
L++ + + ++ NL + NT + H I+K ++ ++ LL+ P L
Sbjct: 415 MLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPMR------MVISLLLQNPEL 468
Query: 358 INEIN 362
+ ++
Sbjct: 469 VKRMS 473
>gi|402304256|ref|ZP_10823327.1| DNA primase [Haemophilus sputorum HK 2154]
gi|400378075|gb|EJP30938.1| DNA primase [Haemophilus sputorum HK 2154]
Length = 557
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/275 (41%), Positives = 166/275 (60%), Gaps = 12/275 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M + Y+ +L + + ++L++RGL+EEII RF +G+APN ++ + K F
Sbjct: 98 MDAIAKLYQQKLTSDIPSQSYLQQRGLSEEIIHRFEIGFAPNAFDTVLKQF--------- 148
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SS K+I+ S E K YDRFR R+MFPI++ G++I FGGR++ D KY
Sbjct: 149 GSSAEETQKLIDTGMLS-RNENGKVYDRFRHRVMFPIRDKRGRVIAFGGRVMGDER-PKY 206
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPE+ ++HK +ELYGLF+ E +L+ EGYMDV+ L+QFG VA LGTA T
Sbjct: 207 LNSPESVIYHKGSELYGLFQVLQQDENPTSLLVVEGYMDVVALAQFGVNNAVASLGTATT 266
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
S I+++ T II +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS+I
Sbjct: 267 SEQIQQMFRVTEQIICCYDGDRAGRDAAWRAFENALPYLYDGRQLKFIFLPDGEDPDSFI 326
Query: 241 RKFGYKIFSKKVLE-AMSLLQFFLEEIILNYNLKT 274
R+ G F + V E A L +F + ++ +L +
Sbjct: 327 RQQGKVQFEQYVQEVAKPLSEFLFDSLLAQVDLSS 361
>gi|260582764|ref|ZP_05850551.1| DNA primase [Haemophilus influenzae NT127]
gi|260094214|gb|EEW78115.1| DNA primase [Haemophilus influenzae NT127]
Length = 593
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 161/258 (62%), Gaps = 11/258 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 ATFYQNQLPLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK ELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGKELYGLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFF 262
+ F + + A SL +F
Sbjct: 356 KEKFEEYIESAQSLSEFM 373
>gi|307257543|ref|ZP_07539307.1| DNA primase [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|306863979|gb|EFM95898.1| DNA primase [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
Length = 580
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 124/350 (35%), Positives = 192/350 (54%), Gaps = 18/350 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
S FY+ L + ++L+ RGL+ EII RF +G+A N ++ L K + + + L +
Sbjct: 127 SRFYQQNLTQDIPSQSYLQNRGLSAEIIARFEIGFAYNSMDSVLRKFGTNRDEVQKLFDT 186
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ ++ YD+FR R+MFPI++ G++I FGGR++ D KY+NS
Sbjct: 187 GMITQNDSGRI-----------YDKFRNRVMFPIRDKRGRVIAFGGRVMGDER-PKYLNS 234
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGLF+A E +++ EGYMDV+ L+QFG VA LGTA T
Sbjct: 235 PESATYHKGNELYGLFQALQQNENPTSLVVVEGYMDVVALAQFGVDNVVASLGTATTGEQ 294
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+++ T +I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS++R
Sbjct: 295 IQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDGEDPDSFVRAQ 354
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F + AMSL F + +I +L + + K L IP LR +
Sbjct: 355 GKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLINRIP-GEMLRVYLR 413
Query: 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
+ L + K+ + L + S + + ++KK ++ I+ M+LLI+
Sbjct: 414 NILGQ--KLGILDPAQLEAMLPS--RSQAVQKKAVRTPQIKRTPMRLLIA 459
>gi|88704607|ref|ZP_01102320.1| DNA primase [Congregibacter litoralis KT71]
gi|88700928|gb|EAQ98034.1| DNA primase [Congregibacter litoralis KT71]
Length = 669
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 170/297 (57%), Gaps = 16/297 (5%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
M ++ FYK L+ N + A+ +LK RGL + F LG AP W N L + D
Sbjct: 122 MERSAAFYKDALRTHENRQPAVEYLKNRGLTGVVARDFGLGLAPAGWDNLLKHLGDDEQT 181
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
++ ++G++V +K + YDRFR RI+FPI++ G++I FGGR++ D +
Sbjct: 182 LSRAITAGMLVKN-----------DKGRVYDRFRDRIVFPIRDRRGRVIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPE+P+FHK ELYGL+EA+ A K +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPESPIFHKGRELYGLYEARRANRKLDRIIVVEGYMDVIALAQAGISYAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA ++ H+++I ++F FDGD+AGR+AA RAL L D + +FLFL + DP
Sbjct: 290 TATSTEHLERIFRVVPEVVFCFDGDEAGRKAAERALHNTLPTMADGRQARFLFLREGEDP 349
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIP 293
DS +RK G + F V A+ L +F + ++ T++ L +I+P
Sbjct: 350 DSLVRKDGTQAFLDLVHAAVPLEEFLFQSQANGLDIGTMEGRASLSKRALPLIRILP 406
>gi|262373262|ref|ZP_06066541.1| DNA primase [Acinetobacter junii SH205]
gi|262313287|gb|EEY94372.1| DNA primase [Acinetobacter junii SH205]
Length = 627
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/353 (33%), Positives = 190/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL NS++A N+ ++RGL+ + I + LGYAP +W L K F +I L G
Sbjct: 178 AQFYERQLPNSQKAQNYFRQRGLSPQTIQFWRLGYAPEDWQHLEKAFP--QDIEGLKQLG 235
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 236 LIRSS-----------DSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSP 284
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 285 DSEVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGINGAVATLGTASNADHL 342
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + I +FDGD AG++AARR LE+ L D + +KF LP+++DPDS IR+ G
Sbjct: 343 TTLFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNEHDPDSLIRREG 402
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + ++ L F + +++ T + + L +++P S R+
Sbjct: 403 LENFQRLLQQSPLLSDFVFAHLTGQHDVSTPEGKSLVMGELRELTELLPKHGSFRY---- 458
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ I +L+ +P L
Sbjct: 459 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAIA-ILMHHPFL 506
>gi|374618895|ref|ZP_09691429.1| DNA primase [gamma proteobacterium HIMB55]
gi|374302122|gb|EHQ56306.1| DNA primase [gamma proteobacterium HIMB55]
Length = 630
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 154/265 (58%), Gaps = 12/265 (4%)
Query: 11 QLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLVVDKI 70
Q K+ + +LK RGL+ EI F LG+AP W+ L + D +++ ++GL+++
Sbjct: 130 QHKDRGRVVEYLKNRGLSGEIARDFRLGFAPEGWDNLMQTLTDEDSVGHALTAGLLIEN- 188
Query: 71 INKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFH 130
+K ++YDRFR R++FPI N G++I GGR++ D + KY+NSPETPLF
Sbjct: 189 ----------DKGRKYDRFRDRVIFPIVNQRGKVIAMGGRVLGD-GKPKYLNSPETPLFS 237
Query: 131 KSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFY 190
KS+ELYGL + + +++ EGYMDVI L+QFG VA LGT+ H++ +
Sbjct: 238 KSHELYGLHHIRKFAKNLSRIVVVEGYMDVIALAQFGIHYAVATLGTSVGKPHLELLFRR 297
Query: 191 TNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSK 250
++F FDGD+AGR+AA R +E L D + +KFLFLP+ DPD+ +R G +
Sbjct: 298 VEQVVFCFDGDEAGRKAAFRGMEAALPMMEDGRQVKFLFLPEGEDPDTVVRSKGAQHLEH 357
Query: 251 KVLEAMSLLQFFLEEIILNYNLKTI 275
A L QF E++ +L T+
Sbjct: 358 MFDTAAPLEQFLFEQMGTGIDLTTM 382
>gi|145630290|ref|ZP_01786071.1| DNA primase [Haemophilus influenzae R3021]
gi|144984025|gb|EDJ91462.1| DNA primase [Haemophilus influenzae R3021]
Length = 593
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 161/258 (62%), Gaps = 11/258 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 AKFYQNQLPLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK ELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGKELYGLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD+YIR++G
Sbjct: 296 QLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFF 262
+ F + + A SL +F
Sbjct: 356 KEKFEEYIESAQSLSEFM 373
>gi|410625625|ref|ZP_11336401.1| DNA primase [Glaciecola mesophila KMM 241]
gi|410154835|dbj|GAC23170.1| DNA primase [Glaciecola mesophila KMM 241]
Length = 588
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/280 (40%), Positives = 170/280 (60%), Gaps = 15/280 (5%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M S ++ QLK + +AI++LKKRGL+ E++ F +GYAP+EW+A+ F
Sbjct: 122 METISRYFSQQLKVHSDKDKAIDYLKKRGLSGEVVKAFGIGYAPSEWDAVLSTF----GR 177
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
A L+ K+I + + + ++ RIMFPI++ G+I+GFGGR++ D
Sbjct: 178 TPEAQQQLLDLKLITENDNRRRFDFFRE------RIMFPIRDKRGRIVGFGGRVLGDGT- 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK NELYG ++AK A V+I EGYMDV+ L+QF VA LGT
Sbjct: 231 PKYLNSPETRIFHKGNELYGFYQAKQAHRNLPRVMIVEGYMDVVALAQFDINYAVASLGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T HI+ + T+ ++ +DGD+AGR AA RALE L Y D +KFLFLPD DPD
Sbjct: 291 ATTPEHIQMLFRTTSEVVCCYDGDRAGREAAWRALENALAYLKDGVEMKFLFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKK-VLEAMSLLQFFLEEIILNYNLKTIK 276
+ +R+ G F +K V +++ L +FF + ++ +++ + +
Sbjct: 351 TLVRQIGKDAFEQKLVSDSVPLSKFFFDNLLQRHHIGSAE 390
>gi|410646951|ref|ZP_11357392.1| DNA primase [Glaciecola agarilytica NO2]
gi|410133452|dbj|GAC05791.1| DNA primase [Glaciecola agarilytica NO2]
Length = 588
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 180/311 (57%), Gaps = 16/311 (5%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M S ++ QLK + AI++LKKRGL+ E++ F +GYAP EW+A+ F
Sbjct: 122 METISRYFSHQLKVHSDKDRAIDYLKKRGLSGEVVKAFGIGYAPTEWDAVLSTF----GR 177
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
A L+ K+I + + + ++ RIMFPI++ G+I+GFGGR++ D
Sbjct: 178 TPEAQQQLIDLKLITENDNRRRFDFFRE------RIMFPIRDKRGRIVGFGGRVLGDGT- 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK NELYG ++AK A ++I EGYMDV+ L+QF VA LGT
Sbjct: 231 PKYLNSPETRIFHKGNELYGFYQAKQAHRNLPRIMIVEGYMDVVALAQFDIKYAVASLGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T HI+ + T+ ++ +DGD+AGR AA RALE L Y D +KFLFLPD DPD
Sbjct: 291 ATTPEHIQMLFRTTSEVVCCYDGDRAGREAAWRALENALAYLKDGVEMKFLFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS 296
+ +R+ G F +K++ +++ L +FF + ++ +++ + + K L + I L
Sbjct: 351 TLVRQIGKDAFEQKLISDSVPLSKFFFDNLLQRHHIGSAEGKAALKAEAMPLIEQI-LGE 409
Query: 297 SLRFKIISSLS 307
+ R + S LS
Sbjct: 410 NQRAILTSELS 420
>gi|332307720|ref|YP_004435571.1| DNA primase [Glaciecola sp. 4H-3-7+YE-5]
gi|332175049|gb|AEE24303.1| DNA primase [Glaciecola sp. 4H-3-7+YE-5]
Length = 588
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 180/311 (57%), Gaps = 16/311 (5%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M S ++ QLK + AI++LKKRGL+ E++ F +GYAP EW+A+ F
Sbjct: 122 METISRYFSHQLKVHSDKDRAIDYLKKRGLSGEVVKAFGIGYAPTEWDAVLSTF----GR 177
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
A L+ K+I + + + ++ RIMFPI++ G+I+GFGGR++ D
Sbjct: 178 TPEAQQQLLDLKLITENDNRRRFDFFRE------RIMFPIRDKRGRIVGFGGRVLGDGT- 230
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPET +FHK NELYG ++AK A ++I EGYMDV+ L+QF VA LGT
Sbjct: 231 PKYLNSPETRIFHKGNELYGFYQAKQAHRNLPRIMIVEGYMDVVALAQFDIKYAVASLGT 290
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
A T H++ + T+ ++ +DGD+AGR AA RALE L Y D +KFLFLPD DPD
Sbjct: 291 ATTPEHVQMLFRTTSEVVCCYDGDRAGREAAWRALENALAYLKDGVEMKFLFLPDGEDPD 350
Query: 238 SYIRKFGYKIFSKK-VLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS 296
+ +R+ G + F +K V +++ L +FF + ++ +++ + + K L + I L
Sbjct: 351 TLVRQIGKEAFEQKLVSDSVPLSKFFFDNLLQRHHIGSAEGKAALKAEAMPLIEQI-LGE 409
Query: 297 SLRFKIISSLS 307
+ R + S LS
Sbjct: 410 NQRAILTSELS 420
>gi|359299232|ref|ZP_09185071.1| DNA primase [Haemophilus [parainfluenzae] CCUG 13788]
Length = 531
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 115/275 (41%), Positives = 166/275 (60%), Gaps = 12/275 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
M + Y+ +L + + ++L++RGL+EEII RF +G+APN ++ + K F
Sbjct: 72 MDAIAKLYQQKLTSDIPSQSYLQQRGLSEEIIHRFEIGFAPNAFDTVLKQF--------- 122
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
SS K+I+ S E K YDRFR R+MFPI++ G++I FGGR++ D KY
Sbjct: 123 GSSAEETQKLIDTGMLS-RNENGKVYDRFRHRVMFPIRDKRGRVIAFGGRVMGDER-PKY 180
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPE+ ++HK +ELYGLF+ E +L+ EGYMDV+ L+QFG VA LGTA T
Sbjct: 181 LNSPESVIYHKGSELYGLFQVLQQDENPTSLLVVEGYMDVVALAQFGVNNAVASLGTATT 240
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
S I+++ T II +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS+I
Sbjct: 241 SEQIQQMFRVTEQIICCYDGDRAGRDAAWRAFENALPYLYDGRQLKFIFLPDGEDPDSFI 300
Query: 241 RKFGYKIFSKKVLE-AMSLLQFFLEEIILNYNLKT 274
R+ G F + V E A L +F + ++ +L +
Sbjct: 301 RQQGKVQFEQYVQEVAKPLSEFLFDSLLAQVDLSS 335
>gi|425743519|ref|ZP_18861597.1| putative DNA primase [Acinetobacter baumannii WC-323]
gi|425493727|gb|EKU59953.1| putative DNA primase [Acinetobacter baumannii WC-323]
Length = 627
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 119/353 (33%), Positives = 190/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL NS++A ++ ++RGL+ + I + LGYAP +W L K F +I L G
Sbjct: 178 AQFYERQLPNSQKAQHYFRQRGLSAQTIQFWRLGYAPEDWQHLEKAF--PQDIEGLKQLG 235
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 236 LIRSS-----------DSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSP 284
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 285 DSEVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGINGAVATLGTASNADHL 342
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + I +FDGD AG++AARR LE+ L D + +KF LP+++DPDS IR+ G
Sbjct: 343 TTLFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNEHDPDSLIRREG 402
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F K + +A L F + +++ T + + L +++P S R+
Sbjct: 403 LENFQKLLQQAPLLSDFVFAHLTGQHDVSTPEGKSLVMGELRELTELLPKHGSFRY---- 458
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T + H NIQ ++ + +L+ +P L
Sbjct: 459 ----LLSQSFREKLGLGKRFTPQVSHDASLSFNIQTKDEDFAVA-ILMHHPFL 506
>gi|407694801|ref|YP_006819589.1| DNA primase catalytic core [Alcanivorax dieselolei B5]
gi|407252139|gb|AFT69246.1| DNA primase catalytic core [Alcanivorax dieselolei B5]
Length = 639
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 118/323 (36%), Positives = 182/323 (56%), Gaps = 20/323 (6%)
Query: 4 ASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINT 59
A +Y+ QLK++ ++A+ +LK RGL+ EI ++ LG+AP + N + + LD +
Sbjct: 125 AERYYRQQLKSAPDRQKAVAYLKGRGLSGEIAAQYGLGFAPPGFDNLITGLSLDQAGLEQ 184
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKR-YDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
++GL+V + E R YD+FR RI FPI++ G+ IGFGGR++ D +
Sbjct: 185 ALTAGLLVRR-----------EDTGRVYDKFRDRIQFPIRDARGRTIGFGGRVLGD-GKP 232
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+E + + ++S + + EGYMDVI L+Q G VA LGTA
Sbjct: 233 KYLNSPETPVFHKGRELYGLWEWRRSRDRSDRLYVVEGYMDVIALAQHGVPNVVATLGTA 292
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H + + N ++F FDGD AGRRAA RALE L D K +FLFLPD DPD+
Sbjct: 293 TSPEHCQTLFRQVNEVVFCFDGDNAGRRAAWRALESTLPALDDGKQARFLFLPDGEDPDT 352
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK-SKYNIEYLFKIIPLSSS 297
+R G + +A +L + + +L T+ + ++ + YL K P
Sbjct: 353 LVRAQGPETLLALTEKADTLSSYLFRHLSEGLDLDTVDGRARLARLALPYLSK--PSGPF 410
Query: 298 LRFKIISSLSKIIKVSFNEINNL 320
R + L+++ ++ + + L
Sbjct: 411 YRALLEEELARLTRLERSSLERL 433
>gi|387824446|ref|YP_005823917.1| DNA primase [Francisella cf. novicida 3523]
gi|328676045|gb|AEB28720.1| DNA primase [Francisella cf. novicida 3523]
Length = 605
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 125/352 (35%), Positives = 199/352 (56%), Gaps = 30/352 (8%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ A +Y+ L NS +AIN+LKKRG++ + F +GY+ WN NI
Sbjct: 120 LAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSNLARFFGIGYSSEGWN----------NI 169
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
LA S + ++I+ + +K YDRFRGRIMFPI+N G +I +GGR+I DS+
Sbjct: 170 TELAKSINISEEILVDTGLAIKNDKGSLYDRFRGRIMFPIRNIQGNVIAYGGRVIDDSDG 229
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYV-----LITEGYMDVIGLSQFGFLQTV 172
KYINSPET +F K+N LYGL+E + ++ ++ ++ EGYMDVIGL+Q GF V
Sbjct: 230 VKYINSPETLVFQKNNILYGLYEYRERKKQLPHLTNQSLVVVEGYMDVIGLAQHGFYAAV 289
Query: 173 AILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPD 232
A LGTA + H K + TNS+I FDGD+AG++AA R +++ L +K +K L LP
Sbjct: 290 ATLGTAFSQNHAKILFRETNSVILCFDGDKAGQKAALRTIKILLPILDGNKKLKILTLPK 349
Query: 233 KYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYL---- 288
DPD YI+++G + F + ++++ F ++ +I +D+ K++ E L
Sbjct: 350 GDDPDDYIKQYGLERFHAALDNSLAVADFVIDNLIQG------RDLTKAESKAEVLENLK 403
Query: 289 -FKIIPLSSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQ 339
F + + I ++++ I + ++ NL KI ++ + T +++NIQ
Sbjct: 404 NFLLDVADNIYSESITATIADKIGIKVEQLKNLLKIRKQNLLNVT-KQQNIQ 454
>gi|406036947|ref|ZP_11044311.1| DNA primase [Acinetobacter parvus DSM 16617 = CIP 108168]
Length = 626
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 120/351 (34%), Positives = 189/351 (53%), Gaps = 24/351 (6%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLV 66
FY+ QL NS++A N+ ++RGL+ + I + LGYAP +W L K F +I+ L GL+
Sbjct: 179 FYERQLPNSQKAQNYFRQRGLSAQTIQFWRLGYAPEDWQHLKKAFP--QDIDGLKQLGLI 236
Query: 67 VDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPET 126
+ + +D R R++FPI++ G+++GFGGR + D + KYINSP++
Sbjct: 237 RSS-----------DSGRDFDLLRDRVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDS 285
Query: 127 PLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKK 186
+FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 286 EVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGISGAVATLGTASNADHLTT 343
Query: 187 ILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYK 246
+ + I +FDGD AG++AARR LE+ L D + +KF LP+++DPDS IR+ G +
Sbjct: 344 LFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNEHDPDSLIRREGLE 403
Query: 247 IFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIISSL 306
F K + +A L F + +++ + + + L +++P S R+
Sbjct: 404 NFQKLLQQAPLLSDFVFAHLTGQHDVSSPEGKSLVMGELRELTELLPKHGSFRY------ 457
Query: 307 SKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NI ++ I +L+ +P L
Sbjct: 458 --LLTQSFREKLGLGKRFTPQISHDASLSFNIHTKDEDFAIA-ILMHHPFL 505
>gi|358011090|ref|ZP_09142900.1| DNA primase [Acinetobacter sp. P8-3-8]
Length = 632
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 169/296 (57%), Gaps = 15/296 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL NSK A ++ K RGL++E I + LGYAP +W L K F +I L G
Sbjct: 182 AQFYERQLPNSKTAQHYFKHRGLSKETIQYWRLGYAPEDWQHLEKAFP--QDIEGLKLLG 239
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI+++ G+++GFGGR + D + KYINSP
Sbjct: 240 LIR-----------TSDSGRDFDLLRDRVIFPIRDSKGRVVGFGGRALNDEIKPKYINSP 288
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + +++ L+ EGYMDVI L Q G VA LGTA + H+
Sbjct: 289 DSEVFHKNQLLYGLYEGRK--DRAQNWLMVEGYMDVIALQQNGISGAVATLGTASNADHL 346
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP ++DPDS IRK G
Sbjct: 347 NILFKQNNQITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPKEHDPDSLIRKEG 406
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
+IF++ ++ L F + NY + T + + + L +++P S R+
Sbjct: 407 LEIFNRLWQQSPLLSDFVFALLSQNYEIGTPEGKSQVMAELNQLTELLPKHGSYRY 462
>gi|410613856|ref|ZP_11324909.1| DNA primase [Glaciecola psychrophila 170]
gi|410166573|dbj|GAC38798.1| DNA primase [Glaciecola psychrophila 170]
Length = 588
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 207/369 (56%), Gaps = 25/369 (6%)
Query: 7 FYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
++ QL+ + +A+N+LK RGL+ EI+ F++GYAP EW+++ K F ++ +
Sbjct: 128 YFAQQLRVHPDKDKAVNYLKNRGLSGEIVKAFDMGYAPPEWDSVLKTF----GVSPVYQE 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
L+ K+I + + + ++ IMFPI++ G++IGFGGR+++D KY+NS
Sbjct: 184 QLLDLKLITENDNRRRFDFFRDR------IMFPIRDKRGRVIGFGGRVLEDGG-PKYLNS 236
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +ELYG ++AK A V+I EGYMDV+ L QFG VA LGTA T H
Sbjct: 237 PETRIFHKGHELYGFYQAKQAHRNLARVMIVEGYMDVVALGQFGIDYAVASLGTATTPEH 296
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+ ++ +DGD+AGR AA RALE L Y D +KFLFLPD DPD+ +RK
Sbjct: 297 IQMLFRATSEVVCCYDGDRAGREAAWRALENALPYLKDGIEMKFLFLPDGEDPDTLVRKI 356
Query: 244 GYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F + + +A+ L +FF + ++ +++ + + K L + I + ++R +
Sbjct: 357 GKETFEENLKNDAVPLSKFFFDNLLQRHHVGSNEGKAALKAEATPLIEQI-IGDNIREIL 415
Query: 303 ISSLSKII------KVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPS 356
+S LS + K + + + + T K I P+ + +++LL+ PS
Sbjct: 416 LSDLSNHMGDQNKHKYERDVAQANLRKSPKKLDFNTPNKSTISPVRM---MIRLLLDDPS 472
Query: 357 LINEINSED 365
L + + D
Sbjct: 473 LAIKCQAAD 481
>gi|315634866|ref|ZP_07890148.1| DNA primase [Aggregatibacter segnis ATCC 33393]
gi|315476418|gb|EFU67168.1| DNA primase [Aggregatibacter segnis ATCC 33393]
Length = 586
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 125/355 (35%), Positives = 196/355 (55%), Gaps = 14/355 (3%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + A ++L++RGL+ EII RF +GY PN A++ V+ +
Sbjct: 128 AKFYQQQLPLNIPAQSYLQQRGLSAEIIERFQIGYVPN---AMDTVYRQFGKTRE-EQQK 183
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L ++++ ++ V YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 184 LFDLGMLSRNDRGNV------YDKFRNRIMFPIRDRRGRTVAFGGRVLTDE-KPKYLNSP 236
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK +ELYGLFEA A + +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 237 ETITYHKGSELYGLFEALQADDSPQKLLVVEGYMDVVALAQFGVNYAVASLGTSTTSEQI 296
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + T +I +DGD+AGR AA RALE L Y D + +KF+FLPD DPDS+IR++G
Sbjct: 297 QLLFRSTEQVICCYDGDRAGRDAAWRALENALPYMEDGRQLKFIFLPDDEDPDSFIRQYG 356
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + +A SL +F + + + + K L K IP LR + +
Sbjct: 357 KQGFEEYIEKAQSLSEFLFAHLTPKVDFSSKEGKAKLAALAIPLIKQIP-GDVLRLDLRN 415
Query: 305 SLSKIIKV-SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
L+K + + ++ +L + +P + ++ LL+ P L+
Sbjct: 416 MLAKKLGILDPTQLESLMPNQAKQENEPVAQGIQFKPTPMRI-LVALLLQNPELV 469
>gi|326794300|ref|YP_004312120.1| DNA primase [Marinomonas mediterranea MMB-1]
gi|326545064|gb|ADZ90284.1| DNA primase [Marinomonas mediterranea MMB-1]
Length = 687
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 179/322 (55%), Gaps = 18/322 (5%)
Query: 4 ASDFYKIQLKNS---KEAINFL-KKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
++ F++ QL S K+A ++L +RGL+ +I + LG+AP W N L +
Sbjct: 120 SAHFFQSQLTQSQFKKKATDYLASERGLSGQIAKVYGLGFAPPGWDNLLKAIGKRAEQQE 179
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
L G++++K ++ + YDRFR RIMFPI+++ G++I FGGR D +
Sbjct: 180 QLLHGGMLIEK---------KDQQGQYYDRFRDRIMFPIRDSRGRVIAFGGRAFGDE-KP 229
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPET +F+KS+ELYGLFEAK + +++ EGYMDVI L+Q+G VA LGT+
Sbjct: 230 KYLNSPETAVFNKSHELYGLFEAKQNTQNLDNIIVVEGYMDVIVLAQYGITNAVATLGTS 289
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
S HI+K+ N I FDGD+AGR AA R LE L D K ++FLFLPD DPDS
Sbjct: 290 VNSQHIRKLFKLVNKITLCFDGDKAGRAAAIRGLEASLPVMQDGKQVRFLFLPDGEDPDS 349
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSL 298
+R+ G F ++ +A SL E L + + N L + IP +
Sbjct: 350 LVRQEGQDAFQARLEDANSLANVLFEHARNQVTLDHEEGDAEFARNAMSLIQQIPNDITY 409
Query: 299 RFKIISSLSK---IIKVSFNEI 317
R ++ LSK I K + N++
Sbjct: 410 RSVLLKQLSKESGIEKETLNQV 431
>gi|71730926|gb|EAO32996.1| DNA primase [Xylella fastidiosa Ann-1]
Length = 577
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 187/366 (51%), Gaps = 19/366 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLA 61
AS F++ L+N+ + +L +RG++ RF +GYAP+ ++ L D I L
Sbjct: 119 AASHFFQKHLENNPKVQAYLNERGVDINTRTRFQIGYAPDGYSVLKDTLGTDERRITLLD 178
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++ + V YD+FR R+MFPI + G++I FGGR++ KY+
Sbjct: 179 RAGMLSKNDRDHV-----------YDKFRDRVMFPIFDRRGRVIAFGGRVLDKDKSPKYL 227
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET LFHKS ELYGL++ + A + +++ EGYMDVI L QFG Q VA LGTA T
Sbjct: 228 NSPETTLFHKSRELYGLWQVRQAHQNIERLIVVEGYMDVISLFQFGITQAVATLGTATTV 287
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + T + F FDGD AGR+A RALE L + + FLFLPD DPD+ +R
Sbjct: 288 EHAELLFRNTPDVYFCFDGDNAGRKAGWRALESILPRMKEGRQAFFLFLPDGEDPDTIVR 347
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G F++++ +A+ L QFF + + + L T+ + L IP +
Sbjct: 348 KEGKNAFNERLKQAIPLSQFFFDALSSDIALHTLDGKARLAERARPLLMKIP-EGAFNDL 406
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI--QPICIEYQ----IMKLLISYP 355
+ L+ + V+ + T +K+N+ I I Q M L YP
Sbjct: 407 MRQRLAHLTGVNIAHPGPAPAATSRPATRLTAQKRNLIHTTIAIILQQPSLAMTLNTPYP 466
Query: 356 SLINEI 361
IN++
Sbjct: 467 LAINDL 472
>gi|383935445|ref|ZP_09988881.1| DNA primase [Rheinheimera nanhaiensis E407-8]
gi|383703539|dbj|GAB58972.1| DNA primase [Rheinheimera nanhaiensis E407-8]
Length = 584
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 126/357 (35%), Positives = 196/357 (54%), Gaps = 32/357 (8%)
Query: 11 QLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLVVD-K 69
Q +S + +++ KRGL+++ + F LGYAP W+ L K + +N A +V+ +
Sbjct: 131 QHPDSPKVRDYIAKRGLSDKTVADFALGYAPESWDGLLKQL---SPVNQRALRDQLVELR 187
Query: 70 IINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLF 129
+IN+ + + YD FR R+MFPI++ G++I FGGR++ D KY+NSPE+ LF
Sbjct: 188 LINRNDNG------REYDFFRDRLMFPIRDKRGRVIAFGGRVLGDGT-PKYLNSPESRLF 240
Query: 130 HKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILF 189
HK ELYGL+E + +L+ EGYMDV+ L++ VA LGTA TS H+ +
Sbjct: 241 HKGRELYGLYEVRQQPGHVEQILVVEGYMDVVALAEHDIRFAVACLGTATTSDHMHTLFR 300
Query: 190 YTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFS 249
YT ++ +DGD+AGR AA RAL+ L D + F+FLPD DPDS +++ G F
Sbjct: 301 YTPKVVCCYDGDRAGRDAAWRALQSALPQLKDGVELNFVFLPDGEDPDSLVQQEGKDAFL 360
Query: 250 KKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEY--LFKIIPLSSSLRFKIISSLS 307
+++ +AM L Q+F E ++ ++ T D KS +++ L K IP S R SLS
Sbjct: 361 QRIAKAMPLNQYFFEHLLQEHDPAT--DAGKSALSVKAAELIKQIP-SEYYR----DSLS 413
Query: 308 KIIKVSFNEINNLFKINTSSIKHKTIEKKN-IQPICIEYQIMK----LLISYPSLIN 359
+++ NL + K N ++P I+ M+ LL+ P+L+N
Sbjct: 414 -------DKLANLLGKSRERTKTAATRAPNRVKPAAIKITPMRRAIGLLLQNPNLVN 463
>gi|28199524|ref|NP_779838.1| DNA primase [Xylella fastidiosa Temecula1]
gi|182682257|ref|YP_001830417.1| DNA primase [Xylella fastidiosa M23]
gi|386083585|ref|YP_005999867.1| DNA primase [Xylella fastidiosa subsp. fastidiosa GB514]
gi|417558765|ref|ZP_12209725.1| DNA primase (bacterial type) DnaG [Xylella fastidiosa EB92.1]
gi|28057639|gb|AAO29487.1| DNA primase [Xylella fastidiosa Temecula1]
gi|182632367|gb|ACB93143.1| DNA primase [Xylella fastidiosa M23]
gi|307578532|gb|ADN62501.1| DNA primase [Xylella fastidiosa subsp. fastidiosa GB514]
gi|338178600|gb|EGO81585.1| DNA primase (bacterial type) DnaG [Xylella fastidiosa EB92.1]
Length = 577
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 187/366 (51%), Gaps = 19/366 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLA 61
AS F++ L+N+ + +L +RG++ RF +GYAP+ ++ L D I L
Sbjct: 119 AASHFFQKHLENNPKVQAYLNERGVDINTRTRFQIGYAPDGYSVLKDTLGTDERRITLLD 178
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++ + V YD+FR R+MFPI + G++I FGGR++ KY+
Sbjct: 179 RAGMLSKNDRDHV-----------YDKFRDRVMFPIFDRRGRVIAFGGRVLDKDKSPKYL 227
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET LFHKS ELYGL++ + A + +++ EGYMDVI L QFG Q VA LGTA T
Sbjct: 228 NSPETTLFHKSRELYGLWQVRQAHQNIERLIVVEGYMDVISLFQFGITQAVATLGTATTV 287
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + T + F FDGD AGR+A RALE L + + FLFLPD DPD+ +R
Sbjct: 288 EHAELLFRNTPDVYFCFDGDNAGRKAGWRALESILPRMKEGRQAFFLFLPDGEDPDTIVR 347
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G F++++ +A+ L QFF + + + L T+ + L IP +
Sbjct: 348 KEGKNAFNERLKQAIPLSQFFFDTLSSDIALHTLDGKARLAERARPLLMKIP-EGAFNDL 406
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI--QPICIEYQ----IMKLLISYP 355
+ L+ + V+ + T +K+N+ I I Q M L YP
Sbjct: 407 MRQRLAHLTGVNIAHPGPATAATSRPATRLTAQKRNLIHTTIAIILQQPSLAMTLNTPYP 466
Query: 356 SLINEI 361
IN++
Sbjct: 467 LAINDL 472
>gi|333909192|ref|YP_004482778.1| DNA primase [Marinomonas posidonica IVIA-Po-181]
gi|333479198|gb|AEF55859.1| DNA primase [Marinomonas posidonica IVIA-Po-181]
Length = 657
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 176/310 (56%), Gaps = 15/310 (4%)
Query: 4 ASDFYKIQL---KNSKEAINFL-KKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
++ FY+ QL + +A ++L K+RGL+ +I F LG+AP+ W N L V +
Sbjct: 120 SATFYQRQLIEHSDKLKATDYLAKERGLSGQIAKVFGLGFAPSGWDNLLKSVGTRAEHQE 179
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
L G+ +I K +Q+ YDRFR RI+FPI+++ G++IGFGGR D +
Sbjct: 180 QLYRGGM----LIEKKDQT-----GHYYDRFRDRIIFPIRDSRGRVIGFGGRAFGD-EKP 229
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+F KS ELYGLFEAK + V++ EGYMDVI L+Q G VA LGT+
Sbjct: 230 KYLNSPETPVFQKSQELYGLFEAKQNTQSLDQVIVVEGYMDVIVLAQHGITNAVATLGTS 289
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
S HI+K+ + +I FDGD+AGR AA R LE L D+K ++FLFLP+ DPDS
Sbjct: 290 VNSQHIRKLFKLVSKVILCFDGDKAGRSAAIRGLEASLPVMQDEKQLRFLFLPEGEDPDS 349
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSL 298
+RK G F+ ++ ++ SL + L + + N + + IP +
Sbjct: 350 LVRKEGKDAFNLRLEDSTSLSHVLFDHARNQVTLADEEGEAQFARNAMSMIQQIPKELTF 409
Query: 299 RFKIISSLSK 308
R +I LS+
Sbjct: 410 RSILIKQLSE 419
>gi|262369407|ref|ZP_06062735.1| DNA primase [Acinetobacter johnsonii SH046]
gi|262315475|gb|EEY96514.1| DNA primase [Acinetobacter johnsonii SH046]
Length = 631
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 170/296 (57%), Gaps = 15/296 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ +Y++QL +S+ A + K+RGL+ + I + LGYAP +W L K F +I L G
Sbjct: 182 AQYYELQLPHSRAAQQYFKQRGLSRDTIAYWRLGYAPEDWQHLEKAFP--QDIEGLKLLG 239
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 240 LIR-----------TSDNGRDFDLLRDRVIFPIRDAKGRVVGFGGRALNDEIKPKYINSP 288
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + +K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 289 DSEVFHKNQLLYGLYEGRK--QKAQDWLMVEGYMDVIALQQYGIAGAVATLGTASNTEHL 346
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 347 NILFKQNNRITIAFDGDVAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 406
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
+ F+K + +A L F + N+++ + + + + L ++P + S R+
Sbjct: 407 IENFNKLLQQAPLLSDFVFAHLTQNHDISSPEGKSQVMSELRQLTDLLPKTGSFRY 462
>gi|424060913|ref|ZP_17798404.1| DNA primase [Acinetobacter baumannii Ab33333]
gi|404668865|gb|EKB36774.1| DNA primase [Acinetobacter baumannii Ab33333]
Length = 621
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 122/353 (34%), Positives = 188/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S++A N+ K+RGL+++ I + LGYAP +W L K F +I L G
Sbjct: 172 AQFYEHQLPTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 229
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 230 LIRSS-----------DSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSP 278
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 279 DSEVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 336
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AA R LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 337 NILFKQNNRITIAFDGDAAGQKAASRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 396
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F K + +A L F + +++ T + + L +++P S R+
Sbjct: 397 VENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 452
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NIQ ++ I +L+ +P L
Sbjct: 453 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAIA-ILMHHPFL 500
>gi|389721503|ref|ZP_10188255.1| DNA primase [Acinetobacter sp. HA]
gi|388608799|gb|EIM37995.1| DNA primase [Acinetobacter sp. HA]
Length = 634
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 166/296 (56%), Gaps = 15/296 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL NS A + K+RGL E I + LGYAP +W L K F +I L G
Sbjct: 182 AQFYERQLPNSPSAQQYFKQRGLTAETIAYWRLGYAPEDWQHLEKAFP--QDIEGLKLLG 239
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 240 LIR-----------TSDNGRDFDLLRDRVIFPIRDAKGRVVGFGGRALNDEIKPKYINSP 288
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + +K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 289 DSEVFHKNQLLYGLYEGRK--QKAQEWLMVEGYMDVIALQQYGIHGAVATLGTASNTEHL 346
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 347 NILFKQNHRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 406
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
+ F + + +A L F + N+++ T + + + L +++P S R+
Sbjct: 407 IENFRRLLDQAPLLSDFVFAHLAQNHDVTTPEGKSQVMAELRQLTELLPKQGSYRY 462
>gi|294649578|ref|ZP_06726997.1| DNA primase [Acinetobacter haemolyticus ATCC 19194]
gi|292824517|gb|EFF83301.1| DNA primase [Acinetobacter haemolyticus ATCC 19194]
Length = 625
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 121/353 (34%), Positives = 188/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL +S++A N+ K RGL+ + I + LGYAP +W L K F +I L G
Sbjct: 176 AQFYERQLPHSQKAQNYFKHRGLSAQTIQFWRLGYAPEDWQHLEKAFP--QDIEGLKQIG 233
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 234 LIRSS-----------DSGRDFDLLRDRVIFPIRDHKGRVVGFGGRALNDDIKPKYINSP 282
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 283 DSEIFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGINGAVATLGTASNADHL 340
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + I +FDGD AG++AARR LE+ L D + +KF LP+++DPDS IR+ G
Sbjct: 341 NTLFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNEHDPDSLIRREG 400
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F K + +A L F + +++ T + + L +++P S R+
Sbjct: 401 LENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 456
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NI ++ I +L+ +P L
Sbjct: 457 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIHTKDEDFAIA-ILMHHPFL 504
>gi|134301934|ref|YP_001121903.1| DNA primase [Francisella tularensis subsp. tularensis WY96-3418]
gi|187931643|ref|YP_001891627.1| DNA primase [Francisella tularensis subsp. mediasiatica FSC147]
gi|421751740|ref|ZP_16188779.1| DNA primase [Francisella tularensis subsp. tularensis AS_713]
gi|421753595|ref|ZP_16190586.1| DNA primase [Francisella tularensis subsp. tularensis 831]
gi|421757320|ref|ZP_16194202.1| DNA primase [Francisella tularensis subsp. tularensis 80700103]
gi|421759180|ref|ZP_16196014.1| DNA primase [Francisella tularensis subsp. tularensis 70102010]
gi|424674499|ref|ZP_18111417.1| DNA primase [Francisella tularensis subsp. tularensis 70001275]
gi|134049711|gb|ABO46782.1| DNA primase [Francisella tularensis subsp. tularensis WY96-3418]
gi|187712552|gb|ACD30849.1| DNA primase [Francisella tularensis subsp. mediasiatica FSC147]
gi|409086861|gb|EKM86974.1| DNA primase [Francisella tularensis subsp. tularensis 831]
gi|409087077|gb|EKM87187.1| DNA primase [Francisella tularensis subsp. tularensis AS_713]
gi|409091244|gb|EKM91247.1| DNA primase [Francisella tularensis subsp. tularensis 70102010]
gi|409092775|gb|EKM92742.1| DNA primase [Francisella tularensis subsp. tularensis 80700103]
gi|417434977|gb|EKT89909.1| DNA primase [Francisella tularensis subsp. tularensis 70001275]
Length = 605
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 123/355 (34%), Positives = 198/355 (55%), Gaps = 33/355 (9%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ A +Y+ L NS +AIN+LKKRG++ + F +GY+ WN NI
Sbjct: 120 LAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWN----------NI 169
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
LA S + ++I+ + +K YDRFRGR+MFPI+N G +I +GGR+ +DS+
Sbjct: 170 TELAKSINIPEEILVDTGLAIKNDKGNLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDG 229
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEK-----SGYVLITEGYMDVIGLSQFGFLQTV 172
KYINSPET +F K+N LYGL+E + ++ + +++ EGYMDV+GL+Q GF V
Sbjct: 230 VKYINSPETLVFQKNNILYGLYEYRERKKQYPDLINQSLVVVEGYMDVVGLAQHGFYAAV 289
Query: 173 AILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPD 232
A LGTA + H K + T+S+I FDGD+AG++AA R +++ L +K +K L LPD
Sbjct: 290 ATLGTAFSPNHAKILFRETSSVILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPD 349
Query: 233 KYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKII 292
K DPD YI+K+G + F + ++++ F ++ +I KD+ K++ E L +
Sbjct: 350 KDDPDDYIKKYGLERFLTALDNSLAVADFVIDNLIQG------KDLRKAEAKAEVLENLK 403
Query: 293 PLSSSLRFKIIS-----SLSKIIKVSFNEINNLFKINTSSI----KHKTIEKKNI 338
+ + I S +++ I + + NL KI + + + I++K +
Sbjct: 404 NFLADVEDNIYSESITATIADKIGIKVEQFKNLLKIRKQTTLNVNRQQNIQQKKL 458
>gi|33519537|ref|NP_878369.1| DNA primase [Candidatus Blochmannia floridanus]
gi|33517200|emb|CAD83582.1| DNA primase [Candidatus Blochmannia floridanus]
Length = 588
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 200/357 (56%), Gaps = 25/357 (7%)
Query: 2 ICASDFYKIQLKNSKE--AINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
IC ++Y+ LK+ K A +LK RGL + I+ F +G+AP W N L + L N
Sbjct: 121 IC--NYYQNNLKHKKYSYAYKYLKNRGLTDSSIIDFKIGFAPMGWNNILTNINLSSYNHK 178
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN-E 117
+ SG+ + K +Q+ K+YDRFR RIMFP+ N G+II FGGRLI+++N E
Sbjct: 179 LIHQSGMWI-----KYHQN------KKYDRFRNRIMFPMHNKLGKIIAFGGRLIQNNNTE 227
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSP+T +F K+ LYG +E + Y+L+ EGY+DVI L+QFG VA LGT
Sbjct: 228 PKYLNSPDTYIFKKNQYLYGFYEICTKYKNIPYILLVEGYIDVIILTQFGVNYAVASLGT 287
Query: 178 ACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPD 237
+ T HI+ I TN +I +DGD AG++AA R L + L Y D + I F+FLP K DPD
Sbjct: 288 SITINHIQLIYSVTNQMICCYDGDSAGKKAAWRTLNIILPYLHDHREICFMFLPVKEDPD 347
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+ IRK G F K++ +A SL F + ++ ++T++ K + I + IP
Sbjct: 348 TLIRKIGKDNFLKQISKAQSLSNFIFDTLLHKVKIQTLEGRVKLSHLILPMINKIP-GQI 406
Query: 298 LRFKIISSLS-KIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLIS 353
L+ ++ LS KI + N++N L I+H N+Q I Y I +LI
Sbjct: 407 LKLCLLQQLSNKIGILDENKLNQLL------IQHSPTLTSNVQNNDITYNIKHILIG 457
>gi|381198238|ref|ZP_09905577.1| DNA primase [Acinetobacter lwoffii WJ10621]
Length = 631
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 169/296 (57%), Gaps = 15/296 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ +Y+ QL +S+ A + K+RGL+ + I + LGYAP +W L K F +I L G
Sbjct: 182 AQYYEQQLPHSRSAQQYFKQRGLSRDTIAYWRLGYAPEDWQHLEKAFP--QDIEGLKLLG 239
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 240 LIR-----------TSDNGRDFDLLRDRVIFPIRDAKGRVVGFGGRALNDEIKPKYINSP 288
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + +K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 289 DSEVFHKNQLLYGLYEGRK--QKAQDCLMVEGYMDVIALQQYGIAGAVATLGTASNTEHL 346
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LP+ +DPDS IR+ G
Sbjct: 347 NILFKQNNRITIAFDGDVAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSMIRREG 406
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
+ F+K + +A L F + N+++ + + + + L ++P + S R+
Sbjct: 407 IENFNKLLQQAPLLSDFVFAHLTQNHDISSPEGKSQVMSELRQLTDLLPKTGSFRY 462
>gi|89256387|ref|YP_513749.1| DNA primase [Francisella tularensis subsp. holarctica LVS]
gi|115314833|ref|YP_763556.1| DNA primase [Francisella tularensis subsp. holarctica OSU18]
gi|156502476|ref|YP_001428541.1| DNA primase [Francisella tularensis subsp. holarctica FTNF002-00]
gi|254367724|ref|ZP_04983745.1| DNA primase [Francisella tularensis subsp. holarctica 257]
gi|254369359|ref|ZP_04985371.1| hypothetical protein FTAG_00330 [Francisella tularensis subsp.
holarctica FSC022]
gi|290953810|ref|ZP_06558431.1| DNA primase [Francisella tularensis subsp. holarctica URFT1]
gi|422938779|ref|YP_007011926.1| DNA primase [Francisella tularensis subsp. holarctica FSC200]
gi|423050740|ref|YP_007009174.1| DNA primase [Francisella tularensis subsp. holarctica F92]
gi|89144218|emb|CAJ79488.1| DNA primase [Francisella tularensis subsp. holarctica LVS]
gi|115129732|gb|ABI82919.1| DNA primase [Francisella tularensis subsp. holarctica OSU18]
gi|134253535|gb|EBA52629.1| DNA primase [Francisella tularensis subsp. holarctica 257]
gi|156253079|gb|ABU61585.1| DNA primase [Francisella tularensis subsp. holarctica FTNF002-00]
gi|157122309|gb|EDO66449.1| hypothetical protein FTAG_00330 [Francisella tularensis subsp.
holarctica FSC022]
gi|407293930|gb|AFT92836.1| DNA primase [Francisella tularensis subsp. holarctica FSC200]
gi|421951462|gb|AFX70711.1| DNA primase [Francisella tularensis subsp. holarctica F92]
Length = 605
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 123/355 (34%), Positives = 198/355 (55%), Gaps = 33/355 (9%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ A +Y+ L NS +AIN+LKKRG++ + F +GY+ WN NI
Sbjct: 120 LAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWN----------NI 169
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
LA S + ++I+ + +K YDRFRGR+MFPI+N G +I +GGR+ +DS+
Sbjct: 170 TELAKSINIPEEILVDTGLAIKNDKGNLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDG 229
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEK-----SGYVLITEGYMDVIGLSQFGFLQTV 172
KYINSPET +F K+N LYGL+E + ++ + +++ EGYMDV+GL+Q GF V
Sbjct: 230 VKYINSPETLVFQKNNILYGLYEYRERKKQYPDLINQSLVVVEGYMDVVGLAQHGFYAAV 289
Query: 173 AILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPD 232
A LGTA + H K + T+S+I FDGD+AG++AA R +++ L +K +K L LPD
Sbjct: 290 ATLGTAFSPNHAKILFRETSSVILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPD 349
Query: 233 KYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKII 292
K DPD YI+K+G + F + ++++ F ++ +I KD+ K++ E L +
Sbjct: 350 KDDPDDYIKKYGLERFLTALDNSLAVADFVIDNLIQG------KDLRKAEAKAEVLENLK 403
Query: 293 PLSSSLRFKIIS-----SLSKIIKVSFNEINNLFKINTSSI----KHKTIEKKNI 338
+ + I S +++ I + + NL KI + + + I++K +
Sbjct: 404 NFLADVEDNIYSESITATIADKIGIKVEQFKNLLKIRKQTTLNVNRQQNIQQKKL 458
>gi|226953432|ref|ZP_03823896.1| DNA primase [Acinetobacter sp. ATCC 27244]
gi|226835815|gb|EEH68198.1| DNA primase [Acinetobacter sp. ATCC 27244]
Length = 625
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 121/353 (34%), Positives = 188/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL +S++A N+ K RGL+ + I + LGYAP +W L K F +I L G
Sbjct: 176 AQFYERQLPHSQKAQNYFKHRGLSAQTIQFWRLGYAPEDWQHLEKAFP--QDIEGLKQIG 233
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 234 LIRSS-----------DSGRDFDLLRDRVIFPIRDHKGRVVGFGGRALNDDIKPKYINSP 282
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 283 DSEVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGINGAVATLGTASNADHL 340
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + I +FDGD AG++AARR LE+ L D + +KF LP+++DPDS IR+ G
Sbjct: 341 NTLFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNEHDPDSLIRREG 400
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F K + +A L F + +++ T + + L +++P S R+
Sbjct: 401 LENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRY---- 456
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NI ++ I +L+ +P L
Sbjct: 457 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIHTKDEDFAIA-ILMHHPFL 504
>gi|392542213|ref|ZP_10289350.1| DNA primase [Pseudoalteromonas piscicida JCM 20779]
Length = 579
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/371 (33%), Positives = 206/371 (55%), Gaps = 31/371 (8%)
Query: 1 MICASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNAL-NKVFLDYNN 56
M+ A+ FY+ QLK N+ + I+++K RGL+ E + +F +GYAP EW +L N++ +
Sbjct: 120 MLQAAKFYQHQLKHHSNATQVIDYVKGRGLSGETVQKFMIGYAPPEWESLCNQIARKPEH 179
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
L L +K + ++D FR R+MFPI++ ++I FGGR++
Sbjct: 180 KQQLLDLKLASEKSAGR-----------QFDFFRDRLMFPIRDKRSRVIAFGGRIMGADQ 228
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
KY+NSPET +FHKS ELYG +EAK A ++ VLI EGYMDV+ L++ G VA LG
Sbjct: 229 GPKYLNSPETRIFHKSFELYGFYEAKQAHKQLDKVLIVEGYMDVVALAEKGIDYAVAALG 288
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA T+ H++ + T+ +I +DGD+AGR AA RAL+ L D K ++F+FLPD DP
Sbjct: 289 TATTAEHMQTLFRNTDRVICCYDGDRAGRDAAWRALDHALPNLKDGKSLQFVFLPDGEDP 348
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS 296
DS +++ G F ++ A Q ++ +L D KSK L IPL S
Sbjct: 349 DSLVQQEGKDAFEARLETASDYTQVLFTKLREQCDL--TNDAGKSK----LLTDAIPLIS 402
Query: 297 SL-----RFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLL 351
+ + ++++L+++I + +++ K+ ++ ++K + + P+ + + LL
Sbjct: 403 KIPSDYYQESLLTTLARLIGRTREQLSA--KLASNKQQNKIERQFKVTPM---RRAIGLL 457
Query: 352 ISYPSLINEIN 362
+ +P L +
Sbjct: 458 LQHPQLAQTVE 468
>gi|303252482|ref|ZP_07338646.1| DNA primase [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|307248517|ref|ZP_07530535.1| DNA primase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|302648683|gb|EFL78875.1| DNA primase [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|306854993|gb|EFM87178.1| DNA primase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
Length = 580
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/356 (33%), Positives = 191/356 (53%), Gaps = 16/356 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
S FY+ L + ++L+ RGL+ EII RF +G+A N ++ L K + + + L +
Sbjct: 127 SRFYQQNLTQDIPSQSYLQNRGLSAEIIARFEIGFAYNSMDSVLRKFGTNRDEVQKLFDT 186
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ ++ YD+FR R+MFPI++ G++I FGGR++ D KY+NS
Sbjct: 187 GMITQNDSGRI-----------YDKFRNRVMFPIRDKRGRVIAFGGRVMGDER-PKYLNS 234
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGLF+A E +++ EGYMDV+ L+QFG VA LGTA T
Sbjct: 235 PESATYHKGNELYGLFQALQQNENPTSLVVVEGYMDVVALAQFGVDNVVASLGTATTGEQ 294
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+++ T +I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS++R
Sbjct: 295 IQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDGEDPDSFVRTQ 354
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G + F + MSL F + +I +L + + K L IP LR +
Sbjct: 355 GKQGFEAYLQNTMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLINRIP-GEMLRVYLR 413
Query: 304 SSLSKIIKV-SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLI 358
+ L + + + ++ + + +++ K + I+ + ++ LL+ P L+
Sbjct: 414 NILGQKLGILDPAQLEAMLPSRSQAVQKKAVRTPQIKRTPMRL-LIALLLQNPELV 468
>gi|270158973|ref|ZP_06187629.1| DNA primase [Legionella longbeachae D-4968]
gi|289166184|ref|YP_003456322.1| DNA primase [Legionella longbeachae NSW150]
gi|269987312|gb|EEZ93567.1| DNA primase [Legionella longbeachae D-4968]
gi|288859357|emb|CBJ13293.1| DNA primase [Legionella longbeachae NSW150]
Length = 572
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 203/367 (55%), Gaps = 24/367 (6%)
Query: 3 CASDFYKIQLKN-SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA 61
S Y+ +LK+ + AIN+L++RGL+ E+ + LG+A W+ L K F N L
Sbjct: 118 AVSLHYRKKLKHEGQPAINYLRERGLSGEVAKLYQLGFATEGWHNLEKAF--PRNQRELI 175
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
++G+++ E K YDR+R RIMFPI + G+IIGFGGR++ + KY+
Sbjct: 176 ATGMLIKN-----------EDGKIYDRYRNRIMFPIHDRHGRIIGFGGRVLDSEQKPKYL 224
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +F KS ELYGL + + + ++I EGYMDVI L+Q + VA LGTA ++
Sbjct: 225 NSPETVIFQKSRELYGLHQVLSQQKSIDSIIIVEGYMDVIALAQHEIINVVATLGTATST 284
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + + S+IF FDGD AG++AA R LE L + + F+FLPD +DPDS +R
Sbjct: 285 YHIQLLSKHAKSLIFCFDGDNAGKQAAWRGLESSLPHLNLGLDVSFMFLPDGHDPDSLVR 344
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKY-NIEYLFKIIPLSSSLRF 300
K G + F ++ +A+ L +FF + + + NL ++ K++ N+ F S +
Sbjct: 345 KEGKEHFLNQIKQAIPLNRFFFDSLSKDLNL--LRPAGKTQLINLAKPFLQKMSEGSYKQ 402
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE 360
+I L+++ + + +N L T + + + P+ I + LL+ +P E
Sbjct: 403 LLIGDLARLTHIEPHRLNQLITDQTKNPSPEPMMTLTRTPMRI---AVALLLQHP----E 455
Query: 361 INSEDMI 367
I ++ M+
Sbjct: 456 IYTQSML 462
>gi|118497506|ref|YP_898556.1| DNA primase [Francisella novicida U112]
gi|195536200|ref|ZP_03079207.1| anticodon nuclease activator family protein [Francisella novicida
FTE]
gi|118423412|gb|ABK89802.1| DNA primase [Francisella novicida U112]
gi|194372677|gb|EDX27388.1| anticodon nuclease activator family protein [Francisella tularensis
subsp. novicida FTE]
Length = 605
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 198/355 (55%), Gaps = 33/355 (9%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ A +Y+ L NS +AIN+LKKRG++ + F +GY+ WN NI
Sbjct: 120 LAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWN----------NI 169
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
LA S + ++I+ + +K YDRFRGR+MFPI+N G +I +GGR+ +DS+
Sbjct: 170 TELAKSINIPEEILVDTGLAIKNDKGNLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDG 229
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEK-----SGYVLITEGYMDVIGLSQFGFLQTV 172
KYINSPET +F K+N LYGL+E + ++ + +++ EGYMDV+ L+Q GF V
Sbjct: 230 VKYINSPETLVFQKNNILYGLYEYRERKKQYPDLINQSLVVVEGYMDVVSLAQHGFYAAV 289
Query: 173 AILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPD 232
A LGTA + H K + T+S+I FDGD+AG++AA R +++ L +K +K L LPD
Sbjct: 290 ATLGTAFSPNHAKILFRETSSVILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPD 349
Query: 233 KYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKII 292
K DPD YI+K+G + F + ++++ +F ++ +I KD+ K++ E L +
Sbjct: 350 KDDPDDYIKKYGLERFHTALGNSLAVAEFVIDNLIQG------KDLRKAEAKAEVLENLK 403
Query: 293 PLSSSLRFKIIS-----SLSKIIKVSFNEINNLFKINTSSI----KHKTIEKKNI 338
+ + I S +++ I + + NL KI + + + I++K +
Sbjct: 404 NFLADVEDNIYSESITATIADKIGIKVEQFKNLLKIRKQTTVNVNRQQNIQQKKL 458
>gi|406040096|ref|ZP_11047451.1| DNA primase [Acinetobacter ursingii DSM 16037 = CIP 107286]
Length = 632
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/353 (33%), Positives = 190/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL +SK+A ++ K+RGL E I + LGYAP +W L K F +I+ L G
Sbjct: 183 AQFYERQLPHSKKAQSYFKQRGLTTETIQFWRLGYAPEDWQHLEKAFP--QDIDGLKKVG 240
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 241 LIRSS-----------DNGRDFDLLRERVIFPIRDQKGRVVGFGGRALNDEIKPKYINSP 289
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 290 DSDIFHKNQLLYGLYEGRKL--KAHDWLMVEGYMDVIALQQYGVYGAVATLGTASNADHL 347
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I +FDGD AG++AARR LE+ L D + +KF LP ++DPDS IR+ G
Sbjct: 348 TTLFKQNPRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPHEHDPDSLIRREG 407
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F++ + +A L F + +++ + + ++ L +++P S R+
Sbjct: 408 LESFNRLLDQAPLLSDFVFAHLTGQHDISSPEGKSLVMGELKALTELLPKHGSFRY---- 463
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L + T I H NIQ ++ + +L+ +P L
Sbjct: 464 ----LLTQSFREKLGLGRKWTPQISHDASLSFNIQTKDEDF-ALAILMHHPYL 511
>gi|262376645|ref|ZP_06069873.1| DNA primase [Acinetobacter lwoffii SH145]
gi|262308355|gb|EEY89490.1| DNA primase [Acinetobacter lwoffii SH145]
Length = 640
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 123/372 (33%), Positives = 200/372 (53%), Gaps = 32/372 (8%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL NS A + K+RGL E I + LGYAP +W L K F +I L G
Sbjct: 188 AQFYERQLPNSPSAQQYFKQRGLTTETIAYWRLGYAPEDWQHLEKAFP--QDIEGLKLLG 245
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++T G+++GFGGR + D + KYINSP
Sbjct: 246 LIR-----------TSDSGRDFDLLRERVIFPIRDTKGRVVGFGGRALNDEIKPKYINSP 294
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + +K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 295 DSEVFHKNQLLYGLYEGRK--QKAQEWLMVEGYMDVIALQQYGIHGAVATLGTASNTDHL 352
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ +N + +FDGD AG++AARR L++ L D + +KF LP +DPDS IR+ G
Sbjct: 353 NILFKQSNRLTIAFDGDAAGQKAARRTLDIALPLLNDGRELKFFVLPADHDPDSLIRREG 412
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + +A + F + N ++ T + + ++ L +++P S R+ +
Sbjct: 413 IENFRRLLEQAPLMSDFVFAHLTQNQDITTPEGKSQVMGELKNLTELLPKHGSFRYLLQQ 472
Query: 305 SLSKIIKVSFNEINNLFKINT-SSIKHKTIEKKNIQPICIEYQIMKLLISYPSL------ 357
+ K+ FN K+NT +S+ T I E ++ +L+++P L
Sbjct: 473 FFRE--KLGFNRKWQP-KVNTDASLSFST-------KIDAEEYVIAILMNHPYLYIHFEP 522
Query: 358 INEINSEDMIIF 369
+ + +ED ++F
Sbjct: 523 LRALVAEDQLLF 534
>gi|406979798|gb|EKE01509.1| hypothetical protein ACD_21C00111G0001 [uncultured bacterium]
Length = 399
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/283 (42%), Positives = 170/283 (60%), Gaps = 16/283 (5%)
Query: 84 KRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSNELYGLFEAKN 143
K Y RFR RIMFPI+N G IIGFGGR + + AKY+NSPET +FHK ELYGL+EAK
Sbjct: 6 KTYARFRDRIMFPIRNIRGHIIGFGGRTL-GKDLAKYLNSPETTIFHKGEELYGLYEAKK 64
Query: 144 AIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNSIIFSFDGDQA 203
A K +++ EGY+DV+ L+QFG VA LGTA ++ ++ +L T+ +IF FDGDQA
Sbjct: 65 ANNKLTSIIVVEGYLDVVALAQFGITNAVATLGTAISTKQVQLLLRNTSEVIFCFDGDQA 124
Query: 204 GRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKVLEAMSLLQFFL 263
GR AA RALE L D IKFLFL + DPDS IRK + F++++ A L FF
Sbjct: 125 GRTAAWRALENSLPLMRDGIQIKFLFLSEGDDPDSLIRKESKEQFAERLKTATPLADFFF 184
Query: 264 EEIILNYNLKTIKDIEK-SKYNIEYLFKIIPLS--SSLRFKIISSLSKIIKVSFNEINNL 320
++++L+ NL TI K +K E+L K +P S + F I+ L+ I ++ L
Sbjct: 185 KQLLLDINLNTIDGRSKLAKVGTEWL-KKMPFSIFRQMMFNKIAELANI------DVEEL 237
Query: 321 FKINTSSIKHKTIEKKNIQPICIEYQI-----MKLLISYPSLI 358
++ + + ++ KN Q + I+ I + +L+ +P L+
Sbjct: 238 KQLELNQPVSENVQNKNDQNLSIDISIAVQNAINILLHHPQLV 280
>gi|255318857|ref|ZP_05360083.1| DNA primase [Acinetobacter radioresistens SK82]
gi|262378885|ref|ZP_06072042.1| DNA primase [Acinetobacter radioresistens SH164]
gi|255304113|gb|EET83304.1| DNA primase [Acinetobacter radioresistens SK82]
gi|262300170|gb|EEY88082.1| DNA primase [Acinetobacter radioresistens SH164]
Length = 627
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 169/301 (56%), Gaps = 15/301 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S+ A + K+RGL+++ + + LGYAP +W L K F +I L G
Sbjct: 177 AQFYEQQLPKSQSAQFYFKQRGLSQDTVQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 234
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ E + +D R R++FPI+++ G+++GFGGR + D + KYINSP
Sbjct: 235 LIRSS-----------ESGRDFDLLRDRVIFPIRDSKGRVVGFGGRALNDEIKPKYINSP 283
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + +K+ LI EGYMDVI L Q+G VA LGTA + H+
Sbjct: 284 DSEVFHKNQLLYGLYEGRK--QKAQDWLIVEGYMDVIALQQYGISGAVATLGTASNTEHL 341
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LPD++DPDS IR+ G
Sbjct: 342 NILFRQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPDQHDPDSLIRREG 401
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + +A L F + ++ + + + + L ++P S R+ +
Sbjct: 402 LENFQRLLEQAPLLSDFVFAHLTQQRDVSSPEGKSQVMGELRELTDLLPKQGSFRYLLTQ 461
Query: 305 S 305
S
Sbjct: 462 S 462
>gi|94676560|ref|YP_589042.1| DNA primase [Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)]
gi|94219710|gb|ABF13869.1| DNA primase [Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)]
Length = 595
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 137/399 (34%), Positives = 210/399 (52%), Gaps = 44/399 (11%)
Query: 5 SDFYKIQLKNSKEAIN-FLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLAS 62
S FY+ L +N +L++RGLN +I F +G+AP W+ + K F I L +
Sbjct: 124 SIFYQQSLHEQALVVNSYLQQRGLNATVINDFAIGFAPPGWDNVIKYFGHSAEAIALLKA 183
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+VV + YD FR RIMFPI++ G II FGGRL+ + + KYIN
Sbjct: 184 TGMVVYN-----------DNGNTYDLFRNRIMFPIRDKRGHIIAFGGRLLGEG-QPKYIN 231
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP + LFHKSN+LYGL+EA+ +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 232 SPASDLFHKSNQLYGLYEAQQKNANLSKLLVVEGYMDVVTLAQFGINYVVASLGTATTTE 291
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
I+ + T+ +I +DGD+AGR AA + LE L Y D + ++F+FL + DPD+ IRK
Sbjct: 292 QIQLLYRTTDQLICCYDGDRAGREAAWKTLENALPYLIDKRQLRFMFLSNSQDPDTIIRK 351
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F K + +A L +F + ++ NL + D K+I L+ L KI
Sbjct: 352 IGKEAFEKYIEQAQPLSEFLFDTLMQQVNLSNLDD----------RVKLIALALPLINKI 401
Query: 303 ISSLSKII-------KVSF---NEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
+ + ++ +V N++ L ++N +K + + PI I ++ LL+
Sbjct: 402 PNGIWRLFLRQLLANRVGILDDNKLEKLLQLNKKRVKSQQNLRIKCTPIHI---LIGLLV 458
Query: 353 SYP---SLINEINSEDMIIFSKCSQNYVKMFFQLIDTIH 388
P +L I+++ + Q VK+F QL+ T
Sbjct: 459 QNPWLSTLAKRISNK----LEQARQPGVKIFIQLVKTCQ 493
>gi|359429025|ref|ZP_09220053.1| DNA primase [Acinetobacter sp. NBRC 100985]
gi|358235606|dbj|GAB01592.1| DNA primase [Acinetobacter sp. NBRC 100985]
Length = 621
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/353 (33%), Positives = 188/353 (53%), Gaps = 24/353 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL NS++ N+ K+RGL+ + I + LGYAP +W L K F +I L G
Sbjct: 172 AQFYERQLPNSQKGQNYFKQRGLSAQTIQFWRLGYAPEDWQHLEKAF--PQDIEGLKQIG 229
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ + + +D R R++FPI++ G+++GFGGR + D + KYINSP
Sbjct: 230 LIRSS-----------DSGRDFDLLRDRVIFPIRDHKGRVVGFGGRALNDEIKPKYINSP 278
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 279 DSEVFHKNQLLYGLYEGRKL--KANDWLMVEGYMDVIALQQYGINGAVATLGTASNADHL 336
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + I +FDGD AG++AARR LE+ L D + +KF LP+++DPDS IR+ G
Sbjct: 337 TTLFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNEHDPDSLIRREG 396
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F K + +A L F + +++ + + + L +++P S R+
Sbjct: 397 LENFQKLLQQAPLLSDFVFAHLTGQHDVSSPEGKSLVMGELRDLTELLPKQGSFRY---- 452
Query: 305 SLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
++ SF E L K T I H NI ++ I +L+ +P L
Sbjct: 453 ----LLTQSFREKLGLGKRFTPQISHDASLSFNIHTKDEDFAIA-ILMHHPFL 500
>gi|333369297|ref|ZP_08461424.1| DNA primase [Psychrobacter sp. 1501(2011)]
gi|332974185|gb|EGK11119.1| DNA primase [Psychrobacter sp. 1501(2011)]
Length = 782
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 171/300 (57%), Gaps = 15/300 (5%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
++ S+FY+ L+++ A+++ K+RGL++ II F LGYAP W L + F +I L
Sbjct: 260 LVSISEFYQHNLRHNSRAMSYFKERGLSDNIIEEFKLGYAPTGWQHLEQAFP--QDIEGL 317
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+ GLV QS EK + YD R R++FPI++ G++IGF GR + + + KY
Sbjct: 318 KALGLV--------RQS---EKGRDYDLLRDRVIFPIRDNQGRVIGFAGRALDNEVKPKY 366
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
INS ++P+FHK + LYG +E++ K+ L+ EGYMDVI L Q G VA +GTA
Sbjct: 367 INSSDSPVFHKQHVLYGYYESRQ--HKANDWLVVEGYMDVIALYQAGIYGAVASMGTAIN 424
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
+ I ++L ++ FDGD AG++AA R LEV L +DDK ++FL LP +DPD+YI
Sbjct: 425 ESQISRLLQLNPTLTLCFDGDSAGQKAAWRTLEVALPVLSDDKELRFLTLPGGHDPDTYI 484
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF 300
G +++ +AM L Q+ + Y+L + K + L +P SS ++
Sbjct: 485 ALQGVDAMREQIKKAMPLSQYIFAYLSERYDLSMAEGKAKLMSQVRQLTNNLPKGSSFKY 544
>gi|352086520|ref|ZP_08954022.1| DNA primase [Rhodanobacter sp. 2APBS1]
gi|351679485|gb|EHA62626.1| DNA primase [Rhodanobacter sp. 2APBS1]
Length = 595
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 189/378 (50%), Gaps = 45/378 (11%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDY-NNINTLASSGL 65
+Y+ +L + +A + +KRGL+ E I RF LG+AP ++ + K + + L +G+
Sbjct: 124 WYEGELPRNADAQAYCRKRGLDAETIRRFRLGWAPAGYDGVIKALGNTPRRMELLNEAGM 183
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA------- 118
V E+ +YDRFR R+MFPI + ++I FGGR+I+ S E
Sbjct: 184 VASS-----------ERGSKYDRFRERLMFPILDRRDRVIAFGGRIIERSGEGSPAPDAR 232
Query: 119 ----------KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGF 168
KY+NSPETPLFHK EL+ L++ K A +++ EGYMDVI L Q G
Sbjct: 233 TQDARKSDGPKYLNSPETPLFHKGRELFALWQVKQANPTLARIVVVEGYMDVIALHQAGL 292
Query: 169 LQTVAILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFL 228
VA LGTA T H + + ++F FDGD+AGR AA +ALE L D + FL
Sbjct: 293 PIAVATLGTATTPEHTEVLFRAAPDVVFCFDGDRAGRAAAWKALESALPRLRDGRQAYFL 352
Query: 229 FLPDKYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYL 288
FLPD DPDS +RK G F +++ +AM L +F E+ + ++ ++ + L
Sbjct: 353 FLPDGEDPDSLVRKEGKAGFEQRIRDAMPLSDYFFNELSHDVDMASLDGRARLAERARPL 412
Query: 289 FKIIPLSSSLRFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIM 348
+P + R + L K + + + H+ +++ P ++ ++
Sbjct: 413 IAKLP-DGAFRDLMAQELEK--RSGARAV-----LQADPAAHRAMQR----PTAVQRSLV 460
Query: 349 K----LLISYPSLINEIN 362
+ LL++ P + +++
Sbjct: 461 RSAISLLLAQPGMADQVE 478
>gi|71281870|ref|YP_270984.1| DNA primase [Colwellia psychrerythraea 34H]
gi|71147610|gb|AAZ28083.1| DNA primase [Colwellia psychrerythraea 34H]
Length = 585
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/363 (32%), Positives = 201/363 (55%), Gaps = 20/363 (5%)
Query: 5 SDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA 61
S F++ QLK + + AI++LK RGL+ E++ RF +GY + W+ + +N+ +
Sbjct: 130 SRFFQQQLKVASDKERAIDYLKARGLSGEVVKRFGIGYISDAWDGV---------MNSFS 180
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G ++I+ + + +K + YDRFRGRIMFPI + G++IGFGGR++ D + KY+
Sbjct: 181 RNGQANQQLID-LGMAISGDKKRPYDRFRGRIMFPISDKRGRVIGFGGRVLGD-EKPKYL 238
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET ++HK ELYGL EAK A ++ +++ EGYMDV+ L+Q G VA LGTA T
Sbjct: 239 NSPETRVYHKGQELYGLHEAKQANKQLKRLIVVEGYMDVVALAQHGVDYAVASLGTATTF 298
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
++ + +I +DGD+AGR AA RA+E L D +KF+FLPD DPDS I
Sbjct: 299 EQLQTLFRTVPDVICCYDGDRAGRDAAWRAMENALPLIRDGFSLKFVFLPDGEDPDSLIG 358
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
G + F + A+ L +F E+++ ++ +++ + + +P S L+
Sbjct: 359 TQGQQAFETIIDNAVPLSKFLFEQLMQKVDMSSLEGRAALVESFQPYLSKLP-DSILKDA 417
Query: 302 IISSLSKIIKVSFNEINNLF--KINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLIN 359
+++ ++ + F I ++++K + + P+ + LL+ +P + N
Sbjct: 418 MLNEIANNFGTGSEQFLAKFTKSIKSTAVKTAVKTRTKVTPV---RSALALLLEHPHIAN 474
Query: 360 EIN 362
+
Sbjct: 475 SLG 477
>gi|385792877|ref|YP_005825853.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678202|gb|AEE87331.1| DNA primase [Francisella cf. novicida Fx1]
Length = 605
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 198/355 (55%), Gaps = 33/355 (9%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ A +Y+ L NS +AIN+LKKRG++ + F +GY+ WN NI
Sbjct: 120 LAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWN----------NI 169
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
LA S + ++I+ + +K YDRFRGR+MFPI+N G +I +GGR+ +DS+
Sbjct: 170 TELAKSINIPEEILVDTGLAIKNDKGNLYDRFRGRLMFPIRNIQGNVIAYGGRVTEDSDG 229
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEK-----SGYVLITEGYMDVIGLSQFGFLQTV 172
KYINSPET +F K+N LYGL+E + ++ + +++ EGYMDV+ L+Q GF V
Sbjct: 230 VKYINSPETLVFQKNNILYGLYEYRERKKQYPDLINQSLVVVEGYMDVVSLAQHGFYAAV 289
Query: 173 AILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPD 232
A LGTA + H K + T+S+I FDGD+AG++AA R +++ L +K +K L LPD
Sbjct: 290 ATLGTAFSPNHAKILFRETSSVILCFDGDEAGKKAALRTIKILLPMLDGNKKLKILTLPD 349
Query: 233 KYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKII 292
K DPD YI+K+G + F + ++++ +F ++ +I KD+ K++ E L +
Sbjct: 350 KDDPDDYIKKYGLERFHTALDNSLAVAEFVIDNLIQG------KDLSKAEAKAEVLENLK 403
Query: 293 PLSSSLRFKIIS-----SLSKIIKVSFNEINNLFKINTSSI----KHKTIEKKNI 338
+ + I S +++ I + + NL KI + + + I++K +
Sbjct: 404 NFLADVEDNIYSESITATIADKIGIKVEQFKNLLKIRRQTTVNINRQQNIQQKKL 458
>gi|62261434|gb|AAX77989.1| unknown protein [synthetic construct]
Length = 640
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 197/355 (55%), Gaps = 33/355 (9%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ A +Y+ L NS +AIN+LKKRG++ + F +GY+ WN NI
Sbjct: 146 LAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWN----------NI 195
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L S + ++I+ + +K YDRFRGR+MFPI+N G +I +GGR+ +DS+
Sbjct: 196 TELVKSINIPEEILVDTGLAIKNDKGNLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDG 255
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEK-----SGYVLITEGYMDVIGLSQFGFLQTV 172
KYINSPET +F K+N LYGL+E + ++ + +++ EGYMDV+GL+Q GF V
Sbjct: 256 VKYINSPETLVFQKNNILYGLYEYRERKKQYPDLINQSLVVVEGYMDVVGLAQHGFYAAV 315
Query: 173 AILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPD 232
A LGTA + H K + T+S+I FDGD+AG++AA R +++ L +K +K L LPD
Sbjct: 316 ATLGTAFSPNHAKILFRETSSVILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPD 375
Query: 233 KYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKII 292
K DPD YI+K+G + F + ++++ F ++ +I KD+ K++ E L +
Sbjct: 376 KDDPDDYIKKYGLERFLTALDNSLAVADFVIDNLIQG------KDLRKAEAKAEVLENLK 429
Query: 293 PLSSSLRFKIIS-----SLSKIIKVSFNEINNLFKINTSSI----KHKTIEKKNI 338
+ + I S +++ I + + NL KI + + + I++K +
Sbjct: 430 NFLADVEDNIYSESITATIADKIGIKVEQFKNLLKIRKQTTLNVNRQQNIQQKKL 484
>gi|421855887|ref|ZP_16288260.1| DNA primase [Acinetobacter radioresistens DSM 6976 = NBRC 102413]
gi|403188720|dbj|GAB74461.1| DNA primase [Acinetobacter radioresistens DSM 6976 = NBRC 102413]
Length = 627
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 169/301 (56%), Gaps = 15/301 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S+ A + K+RGL+++ + + LGYAP +W L K F +I L G
Sbjct: 177 AQFYEQQLPKSQSAQFYFKQRGLSQDTVQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 234
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ E + +D R R++FPI+++ G+++GFGGR + D + KYINSP
Sbjct: 235 LIRSS-----------ESGRDFDLLRDRVIFPIRDSKGRVVGFGGRALNDEIKPKYINSP 283
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + +K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 284 DSEVFHKNQLLYGLYEGRK--QKAQDWLMVEGYMDVIALQQYGISGAVATLGTASNTEHL 341
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LPD++DPDS IR+ G
Sbjct: 342 NILFRQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPDQHDPDSLIRREG 401
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + +A L F + ++ + + + + L ++P S R+ +
Sbjct: 402 LENFQRLLEQAPLLSDFVFAHLTQQRDVSSPEGKSQVMGELRELTDLLPKQGSFRYLLTQ 461
Query: 305 S 305
S
Sbjct: 462 S 462
>gi|406595571|ref|YP_006746701.1| DNA primase [Alteromonas macleodii ATCC 27126]
gi|406372892|gb|AFS36147.1| DNA primase [Alteromonas macleodii ATCC 27126]
Length = 592
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/273 (43%), Positives = 170/273 (62%), Gaps = 18/273 (6%)
Query: 7 FYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLAS 62
F++ QL+ NSK+AI++LK RGL+ +I+ ++ +GYAP+ W+AL F D I L
Sbjct: 128 FFQHQLRQNGNSKKAIDYLKNRGLSGDIVKQWEIGYAPDSWDALLNTFGKDQQRIKQL-- 185
Query: 63 SGLVVD-KIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
VD K++NK +Q + YD FR RIMFPI++ G+++GFGGR++ D KY+
Sbjct: 186 ----VDLKLVNKNDQG------RTYDFFRDRIMFPIRDKRGRVVGFGGRVLDDGG-PKYL 234
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +EL+G + A+ V+I EGYMDV+ LSQF A LGTA T
Sbjct: 235 NSPETRIFHKGSELFGFYSARQKNRSLDTVVIVEGYMDVVALSQFDINIATAALGTATTP 294
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ ++ T+ I+ +DGD+AGR AA RALE L D I FLFLPD DPD+ +R
Sbjct: 295 EHIQMLVRATSHIVCCYDGDRAGREAAWRALENALPALKDGVRISFLFLPDGEDPDTMVR 354
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
+ G F + + +AM L +FF E ++ +N+ T
Sbjct: 355 QVGKDAFMEMLDDAMPLSRFFFENLLKTHNVGT 387
>gi|421897751|ref|ZP_16328118.1| dna primase protein (partial protein n terminus) [Ralstonia
solanacearum MolK2]
gi|206588957|emb|CAQ35919.1| dna primase protein (partial protein n terminus) [Ralstonia
solanacearum MolK2]
Length = 361
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/190 (51%), Positives = 128/190 (67%), Gaps = 9/190 (4%)
Query: 1 MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN---I 57
M A D Y+ QL+++ AI +LK RGL EI F LGYAP++W +L VF Y +
Sbjct: 120 MARAGDHYRKQLRSAANAIQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYRDDAIA 179
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L +GLV++ ++ +++RYDRFR RIMFPI+NT G +IGFGGR++ E
Sbjct: 180 VPLIEAGLVIES-----EKTDADGRHRRYDRFRDRIMFPIRNTKGVVIGFGGRVL-GQGE 233
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGT 177
KY+NSPETPLF K ELYGLFEA+NAI + GYVL+ EGYMDV+ L+Q GF VA LGT
Sbjct: 234 PKYLNSPETPLFSKGTELYGLFEARNAIREFGYVLVVEGYMDVVALAQLGFANAVATLGT 293
Query: 178 ACTSTHIKKI 187
ACT H++K+
Sbjct: 294 ACTPVHVQKL 303
>gi|421466087|ref|ZP_15914773.1| putative DNA primase [Acinetobacter radioresistens WC-A-157]
gi|400203598|gb|EJO34584.1| putative DNA primase [Acinetobacter radioresistens WC-A-157]
Length = 627
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 169/301 (56%), Gaps = 15/301 (4%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL S+ A + K+RGL+++ + + LGYAP +W L K F +I L G
Sbjct: 177 AQFYEQQLPKSQSAQFYFKQRGLSQDTVQFWRLGYAPEDWQHLEKAFP--YDIEGLKQLG 234
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ E + +D R R++FPI+++ G+++GFGGR + D + KYINSP
Sbjct: 235 LIRSS-----------ESGRDFDLLRDRVIFPIRDSKGRVVGFGGRALNDEIKPKYINSP 283
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ +FHK+ LYGL+E + +K+ L+ EGYMDVI L Q+G VA LGTA + H+
Sbjct: 284 DSEVFHKNQLLYGLYEGRK--QKAQDWLMVEGYMDVIALQQYGISGAVATLGTASNTEHL 341
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ N I +FDGD AG++AARR LE+ L D + +KF LPD++DPDS IR+ G
Sbjct: 342 NILFRQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPDQHDPDSLIRREG 401
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + +A L F + ++ + + + + L ++P S R+ +
Sbjct: 402 LENFQRLLEQAPLLSDFVFAHLTQQRDVSSPEGKSQVMGELRELTDLLPKQGSFRYLLTQ 461
Query: 305 S 305
S
Sbjct: 462 S 462
>gi|365967987|ref|YP_004949549.1| DNA primase [Aggregatibacter actinomycetemcomitans ANH9381]
gi|444345852|ref|ZP_21153856.1| DNA primase [Aggregatibacter actinomycetemcomitans serotype c str.
AAS4A]
gi|365746900|gb|AEW77805.1| DNA primase [Aggregatibacter actinomycetemcomitans ANH9381]
gi|443542393|gb|ELT52730.1| DNA primase [Aggregatibacter actinomycetemcomitans serotype c str.
AAS4A]
Length = 585
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 181/308 (58%), Gaps = 12/308 (3%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + A ++L++RGL+ E+I RF +GY PN A++ V+ + N
Sbjct: 128 AKFYQQQLPLNIPAQSYLQQRGLSAEVIERFQIGYVPN---AMDSVYRQFGK-NREEQQK 183
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L ++++ ++ V YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 184 LFDLGMLSRNDRGNV------YDKFRNRIMFPIRDRRGRTVAFGGRVLTDE-KPKYLNSP 236
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK +ELYGL+EA A + +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 237 ETVTYHKGSELYGLYEALQADDSPQKLLVVEGYMDVVALAQFGVNYAVASLGTSTTSEQI 296
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD++IR++G
Sbjct: 297 QLLFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTFIRQYG 356
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + A SL +F + + + + K L K IP LR + +
Sbjct: 357 KQGFEEYLDNAQSLSEFLFAHLTPQVDFSSKEGKAKLAALAIPLIKQIP-GDVLRLDLRN 415
Query: 305 SLSKIIKV 312
+L+K + +
Sbjct: 416 TLAKKLGI 423
>gi|407682534|ref|YP_006797708.1| DNA primase [Alteromonas macleodii str. 'English Channel 673']
gi|407244145|gb|AFT73331.1| DNA primase [Alteromonas macleodii str. 'English Channel 673']
Length = 592
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/273 (43%), Positives = 170/273 (62%), Gaps = 18/273 (6%)
Query: 7 FYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLAS 62
F++ QL+ NSK+AI++LK RGL+ +I+ ++ +GYAP+ W+AL F D I L
Sbjct: 128 FFQHQLRQNGNSKKAIDYLKNRGLSGDIVKQWEIGYAPDSWDALLNTFGKDQQRIKQL-- 185
Query: 63 SGLVVD-KIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
VD K++NK +Q + YD FR RIMFPI++ G+++GFGGR++ D KY+
Sbjct: 186 ----VDLKLVNKNDQG------RTYDFFRDRIMFPIRDKRGRVVGFGGRVLDDGG-PKYL 234
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +EL+G + A+ V+I EGYMDV+ LSQF A LGTA T
Sbjct: 235 NSPETRIFHKGSELFGFYSARQKNRSLDTVVIVEGYMDVVALSQFDINIATAALGTATTP 294
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ ++ T+ I+ +DGD+AGR AA RALE L D I FLFLPD DPD+ +R
Sbjct: 295 EHIQMLVRATSHIVCCYDGDRAGREAAWRALENALPALKDGVRISFLFLPDGEDPDTMVR 354
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
+ G F + + +AM L +FF E ++ +N+ T
Sbjct: 355 QVGKDAFMEMLDDAMPLSRFFFENLLKTHNVGT 387
>gi|416081182|ref|ZP_11586381.1| DNA primase [Aggregatibacter actinomycetemcomitans serotype b str.
I23C]
gi|416102675|ref|ZP_11588857.1| DNA primase [Aggregatibacter actinomycetemcomitans serotype c str.
SCC2302]
gi|444347700|ref|ZP_21155531.1| DNA primase [Aggregatibacter actinomycetemcomitans serotype b str.
S23A]
gi|348008524|gb|EGY48790.1| DNA primase [Aggregatibacter actinomycetemcomitans serotype c str.
SCC2302]
gi|348011097|gb|EGY51084.1| DNA primase [Aggregatibacter actinomycetemcomitans serotype b str.
I23C]
gi|443548344|gb|ELT57616.1| DNA primase [Aggregatibacter actinomycetemcomitans serotype b str.
S23A]
Length = 586
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 181/308 (58%), Gaps = 12/308 (3%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + A ++L++RGL+ E+I RF +GY PN A++ V+ + N
Sbjct: 128 AKFYQQQLPLNIPAQSYLQQRGLSAEVIERFQIGYVPN---AMDSVYRQFGK-NREEQQK 183
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L ++++ ++ V YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 184 LFDLGMLSRNDRGNV------YDKFRNRIMFPIRDRRGRTVAFGGRVLTDE-KPKYLNSP 236
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK +ELYGL+EA A + +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 237 ETVTYHKGSELYGLYEALQADDSPQKLLVVEGYMDVVALAQFGVNYAVASLGTSTTSEQI 296
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD++IR++G
Sbjct: 297 QLLFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTFIRQYG 356
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + A SL +F + + + + K L K IP LR + +
Sbjct: 357 KQGFEEYLDNAQSLSEFLFAHLTPQVDFSSKEGKAKLAALAIPLIKQIP-GDVLRLDLRN 415
Query: 305 SLSKIIKV 312
+L+K + +
Sbjct: 416 TLAKKLGI 423
>gi|71274630|ref|ZP_00650918.1| DNA primase [Xylella fastidiosa Dixon]
gi|170730895|ref|YP_001776328.1| DNA primase [Xylella fastidiosa M12]
gi|71164362|gb|EAO14076.1| DNA primase [Xylella fastidiosa Dixon]
gi|167965688|gb|ACA12698.1| DNA primase [Xylella fastidiosa M12]
Length = 577
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 124/366 (33%), Positives = 186/366 (50%), Gaps = 19/366 (5%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNINTLA 61
AS F++ L+N+ + +L +RG++ RF +GYAP+ ++ L D I L
Sbjct: 119 AASHFFQKHLENNPKVQAYLNERGVDINTRTRFQIGYAPDGYSVLKDTLGTDERRITLLD 178
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++ + V YD+FR R+MFPI + G++I FGGR++ KY+
Sbjct: 179 RAGMLSKNDRDHV-----------YDKFRDRVMFPIFDRRGRVIAFGGRVLDKDKSPKYL 227
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET LFHKS ELYGL++ + A + +++ EGYMDVI L QFG Q VA LGTA T
Sbjct: 228 NSPETTLFHKSRELYGLWQVRQAHQNIERLIVVEGYMDVISLFQFGITQAVATLGTATTV 287
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H + + T + F FDGD AGR+A RALE L + + FLFLPD DPD+ +R
Sbjct: 288 EHAELLFRNTPDVYFCFDGDNAGRKAGWRALESILPRMKEGRQAFFLFLPDGEDPDTIVR 347
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G F++++ +A+ L QFF + + + L T+ + L IP +
Sbjct: 348 KEGKNAFNERLKQAIPLSQFFFDALSSDIALHTLDGKARLAERARPLLMKIP-EGAFNDL 406
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNI--QPICIEYQ----IMKLLISYP 355
+ L+ + V+ + +K+N+ I I Q M L YP
Sbjct: 407 MRQRLAHLTGVNIAHPGPAPAATSRPATRLPAQKRNLIHTTIAIILQQPSLAMTLNTPYP 466
Query: 356 SLINEI 361
IN++
Sbjct: 467 LAINDL 472
>gi|410633995|ref|ZP_11344635.1| DNA primase [Glaciecola arctica BSs20135]
gi|410146655|dbj|GAC21502.1| DNA primase [Glaciecola arctica BSs20135]
Length = 588
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 127/369 (34%), Positives = 208/369 (56%), Gaps = 25/369 (6%)
Query: 7 FYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
++ QLK + +A+N+LK RGL+ EI+ F++G+AP EW+++ K F I+ +
Sbjct: 128 YFAQQLKVHPDKDKAVNYLKNRGLSGEIVKAFDMGFAPPEWDSVLKTF----GISPVYQE 183
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
L+ K+I + + + ++ IMFPI+ G++IGFGGR++ D KY+NS
Sbjct: 184 QLLDLKLITENDNRRRFDFFRDR------IMFPIREKRGRVIGFGGRVLDDGG-PKYLNS 236
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +ELYG ++AK A V+I EGYMDV+ L QFG VA LGTA T+ H
Sbjct: 237 PETRIFHKGHELYGFYQAKQAHRNLARVMIVEGYMDVVALGQFGIDYAVASLGTATTAEH 296
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T+ I+ +DGD+AGR AA RALE L + D +KFLFLPD DPD+ +RK
Sbjct: 297 IQMLFRATSEIVCCYDGDRAGREAAWRALENALPFLKDGVEMKFLFLPDGEDPDTLVRKI 356
Query: 244 GYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G + F +K+ +++ L +FF + ++ +++ + + K L + I + ++R +
Sbjct: 357 GKETFEEKLKNDSVPLSKFFFDNLLQRHHVSSNEGKAALKAEAIPLIEQI-VGDNIREIL 415
Query: 303 ISSLSKII------KVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPS 356
+S LS + K+ + + N + T K I P+ + +++LL+ P
Sbjct: 416 LSDLSNYMGDQNKHKLERDIAQANQRKNPKKLDFNTPNKSTISPVRM---MIRLLLDDPG 472
Query: 357 LINEINSED 365
L + ++ D
Sbjct: 473 LAIKCSAAD 481
>gi|261868196|ref|YP_003256118.1| DNA primase [Aggregatibacter actinomycetemcomitans D11S-1]
gi|415770839|ref|ZP_11485085.1| DNA primase [Aggregatibacter actinomycetemcomitans D17P-2]
gi|261413528|gb|ACX82899.1| DNA primase [Aggregatibacter actinomycetemcomitans D11S-1]
gi|348656620|gb|EGY74230.1| DNA primase [Aggregatibacter actinomycetemcomitans D17P-2]
Length = 585
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 181/308 (58%), Gaps = 12/308 (3%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + A ++L++RGL+ E+I RF +GY PN A++ V+ + N
Sbjct: 128 AKFYQQQLPLNIPAQSYLQQRGLSAEVIERFQIGYVPN---AMDSVYRQFGK-NREEQQK 183
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L ++++ ++ V YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 184 LFDLGMLSRNDRGNV------YDKFRNRIMFPIRDRRGRTVAFGGRVLTDE-KPKYLNSP 236
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK +ELYGL+EA A + +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 237 ETVTYHKGSELYGLYEALQADDSPQKLLVVEGYMDVVALAQFGVNYAVASLGTSTTSEQI 296
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD DPD++IR++G
Sbjct: 297 QLLFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTFIRQYG 356
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + A SL +F + + + + K L K IP LR + +
Sbjct: 357 KQGFEEYLDNAQSLSEFLFAHLTPKVDFSSKEGKAKLAALAIPLIKQIP-GDVLRLDLRN 415
Query: 305 SLSKIIKV 312
+L+K + +
Sbjct: 416 TLAKKLGI 423
>gi|71891847|ref|YP_277576.1| DNA primase [Candidatus Blochmannia pennsylvanicus str. BPEN]
gi|71795953|gb|AAZ40704.1| DNA primase [Candidatus Blochmannia pennsylvanicus str. BPEN]
Length = 581
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 142/391 (36%), Positives = 207/391 (52%), Gaps = 29/391 (7%)
Query: 2 ICASDFYKIQLKNSKE--AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVF-LDYNNIN 58
+CA +YK L K A +LK RGLN + I FN+G+AP WN + + F L +
Sbjct: 120 LCA--YYKNILTQKKYLYAYKYLKNRGLNTKTIDDFNIGFAPPRWNNIIQKFGLTLYDQK 177
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
L SG+++ S +KYK YDRFR R++FPI++ G+I+ FGGR+I +
Sbjct: 178 LLDQSGMLI---------SSNTKKYK-YDRFRDRLIFPIRDITGRIVAFGGRVITQNKIP 227
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSP+T +F KS LYGL+EA+ + +L+ EGY+DVI L+QFG VA LGT+
Sbjct: 228 KYLNSPDTEIFKKSQHLYGLYEARMKHKNLSCILLVEGYIDVITLTQFGINYAVAALGTS 287
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
T HI+ + T+ II +DGD AG++AA R L L Y TD++ I F FLP DPD+
Sbjct: 288 TTDNHIRLLYSITDQIICCYDGDYAGKKAAWRTLNTALPYLTDERQIHFAFLPHGEDPDT 347
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSL 298
IRK G F K++ + L F E + NL+T+ K I + K IP +L
Sbjct: 348 LIRKIGKDNFLKRLTQTQDLSNFLFETLSKKTNLQTLSGRVKLSSLILPILKKIP-GQTL 406
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPIC-----IEYQIMKLLIS 353
+ ++ L K+ + N L ++ + K + N C I + ++ LLI
Sbjct: 407 KLCLLQQLGN--KIGILDDNKLSQL----LTRKPVTYTNKINRCYVNNSIGHILVGLLIQ 460
Query: 354 YPSLINEINSEDMIIFSKCSQNYVKMFFQLI 384
P L + S + + QN + MF LI
Sbjct: 461 NPRLSKLVPSVQGL--EQLKQNDIVMFIDLI 489
>gi|56708123|ref|YP_170019.1| DNA primase [Francisella tularensis subsp. tularensis SCHU S4]
gi|110670594|ref|YP_667151.1| DNA primase [Francisella tularensis subsp. tularensis FSC198]
gi|254370609|ref|ZP_04986614.1| DNA primase [Francisella tularensis subsp. tularensis FSC033]
gi|254874923|ref|ZP_05247633.1| DNA primase [Francisella tularensis subsp. tularensis MA00-2987]
gi|379717364|ref|YP_005305700.1| DNA primase [Francisella tularensis subsp. tularensis TIGB03]
gi|379725968|ref|YP_005318154.1| DNA primase [Francisella tularensis subsp. tularensis TI0902]
gi|385794789|ref|YP_005831195.1| DNA primase [Francisella tularensis subsp. tularensis NE061598]
gi|421755668|ref|ZP_16192610.1| DNA primase [Francisella tularensis subsp. tularensis 80700075]
gi|56604615|emb|CAG45669.1| DNA primase [Francisella tularensis subsp. tularensis SCHU S4]
gi|110320927|emb|CAL09052.1| DNA primase [Francisella tularensis subsp. tularensis FSC198]
gi|151568852|gb|EDN34506.1| DNA primase [Francisella tularensis subsp. tularensis FSC033]
gi|254840922|gb|EET19358.1| DNA primase [Francisella tularensis subsp. tularensis MA00-2987]
gi|282159324|gb|ADA78715.1| DNA primase [Francisella tularensis subsp. tularensis NE061598]
gi|377827417|gb|AFB80665.1| DNA primase [Francisella tularensis subsp. tularensis TI0902]
gi|377829041|gb|AFB79120.1| DNA primase [Francisella tularensis subsp. tularensis TIGB03]
gi|409087826|gb|EKM87914.1| DNA primase [Francisella tularensis subsp. tularensis 80700075]
Length = 605
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 197/355 (55%), Gaps = 33/355 (9%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
+ A +Y+ L NS +AIN+LKKRG++ + F +GY+ WN NI
Sbjct: 120 LAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWN----------NI 169
Query: 58 NTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE 117
L S + ++I+ + +K YDRFRGR+MFPI+N G +I +GGR+ +DS+
Sbjct: 170 TELVKSINIPEEILVDTGLAIKNDKGNLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDG 229
Query: 118 AKYINSPETPLFHKSNELYGLFEAKNAIEK-----SGYVLITEGYMDVIGLSQFGFLQTV 172
KYINSPET +F K+N LYGL+E + ++ + +++ EGYMDV+GL+Q GF V
Sbjct: 230 VKYINSPETLVFQKNNILYGLYEYRERKKQYPDLINQSLVVVEGYMDVVGLAQHGFYAAV 289
Query: 173 AILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPD 232
A LGTA + H K + T+S+I FDGD+AG++AA R +++ L +K +K L LPD
Sbjct: 290 ATLGTAFSPNHAKILFRETSSVILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPD 349
Query: 233 KYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKII 292
K DPD YI+K+G + F + ++++ F ++ +I KD+ K++ E L +
Sbjct: 350 KDDPDDYIKKYGLERFLTALDNSLAVADFVIDNLIQG------KDLRKAEAKAEVLENLK 403
Query: 293 PLSSSLRFKIIS-----SLSKIIKVSFNEINNLFKINTSSI----KHKTIEKKNI 338
+ + I S +++ I + + NL KI + + + I++K +
Sbjct: 404 NFLADVEDNIYSESITATIADKIGIKVEQFKNLLKIRKQTTLNVNRQQNIQQKKL 458
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.140 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,413,512,980
Number of Sequences: 23463169
Number of extensions: 267623714
Number of successful extensions: 811053
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4448
Number of HSP's successfully gapped in prelim test: 719
Number of HSP's that attempted gapping in prelim test: 795162
Number of HSP's gapped (non-prelim): 5771
length of query: 444
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 298
effective length of database: 8,933,572,693
effective search space: 2662204662514
effective search space used: 2662204662514
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 78 (34.7 bits)