BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15222
(444 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P57028|PRIM_NEIMA DNA primase OS=Neisseria meningitidis serogroup A / serotype 4A
(strain Z2491) GN=dnaG PE=3 SV=1
Length = 590
Score = 270 bits (691), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 216/354 (61%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLTQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLV 457
>sp|P57029|PRIM_NEIMB DNA primase OS=Neisseria meningitidis serogroup B (strain MC58)
GN=dnaG PE=3 SV=1
Length = 590
Score = 269 bits (688), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 216/354 (61%), Gaps = 23/354 (6%)
Query: 3 CASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLAS 62
A+DFY QLK + A +L KRGL+ E+I + LGYAP+ W L +VF Y N L
Sbjct: 123 AAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLTQVFQPYPN-TALVD 181
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+G+V+D + + YDRFR RIMFPI+N GQ+IGFGGR++ DS + KY+N
Sbjct: 182 TGMVIDN------------EGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLN 228
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SP+TPLF K LYGL+E + A++++G +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 229 SPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAE 288
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+K ++ +SI F FDGD AGR+AA RALE L DDK + FLFLP+++DPDSYIR
Sbjct: 289 HVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRA 348
Query: 243 FGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKD-IEKSKYNIEYLFKIIPLSSSLRF 300
+G F +L ++ L ++F E + +L T + E K + L +I + +L +
Sbjct: 349 YGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQIT--APALAY 406
Query: 301 KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKN--IQPICIEYQIMKLLI 352
+ LS+++ + + +NL ++ + +++KN + PI ++ +M L+
Sbjct: 407 LLKQRLSELVGI---DPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMLTLV 457
>sp|Q9I5W0|PRIM_PSEAE DNA primase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 /
1C / PRS 101 / LMG 12228) GN=dnaG PE=3 SV=1
Length = 664
Score = 244 bits (623), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 195/337 (57%), Gaps = 19/337 (5%)
Query: 1 MICASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNN 56
+ A++FYK LK+ K A+N+LK RGL EI F LG+AP W N L + D
Sbjct: 121 LSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNLQ 180
Query: 57 INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
+ + +GL+V+ + KRYDRFR R+MFPI+++ G+II FGGR++ D +
Sbjct: 181 LKAMLDAGLLVENS----------DTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-D 229
Query: 117 EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILG 176
+ KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LG
Sbjct: 230 KPKYLNSPETPVFHKGQELYGLYEARQKNRDLDEIMVVEGYMDVIALAQQGIRNAVATLG 289
Query: 177 TACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236
TA + HIK++ SI+F FDGDQAGR+AA RALE L D K ++FLFLP+ DP
Sbjct: 290 TATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGEDP 349
Query: 237 DSYIRKFGYKIFSKKVL-EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
DS +R G F ++ +A L ++F ++++L + T++ L + IP
Sbjct: 350 DSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIP-G 408
Query: 296 SSLRFKIISSLSKIIKVSFNEINNL--FKINTSSIKH 330
++LR + LS+I +S I L SS+ H
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDH 445
>sp|P0A119|PRIM_PSEPU DNA primase OS=Pseudomonas putida GN=dnaG PE=3 SV=1
Length = 660
Score = 229 bits (584), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 192/333 (57%), Gaps = 19/333 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
AS+FY+ L++ K A+++LK RGL+ EI F LG+AP W N L + D
Sbjct: 122 AASEFYRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DPDS
Sbjct: 291 TSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDPDS 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ + L +F E++ + + ++++ L + IP ++
Sbjct: 351 LVRAEGTDAFMARINQHSQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK--INTSSI 328
LR + + L +I + ++ L + TSS+
Sbjct: 410 LRQLMRNRLKEITGLDPQQVEQLAQQAPATSSM 442
>sp|P0A118|PRIM_PSEPK DNA primase OS=Pseudomonas putida (strain KT2440) GN=dnaG PE=3 SV=1
Length = 660
Score = 229 bits (584), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 192/333 (57%), Gaps = 19/333 (5%)
Query: 3 CASDFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNIN 58
AS+FY+ L++ K A+++LK RGL+ EI F LG+AP W N L + D
Sbjct: 122 AASEFYRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQQK 181
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ +GL+++ E KRYDRFR R+MFPI+++ G+II FGGR++ D ++
Sbjct: 182 VMIDAGLLIENA----------ESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGD-DKP 230
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+NSPETP+FHK ELYGL+EA+ +++ EGYMDVI L+Q G VA LGTA
Sbjct: 231 KYLNSPETPVFHKGQELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTA 290
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
+ H+K++ S++F FDGDQAGR+AA RALE L D + +FLFLP+ DPDS
Sbjct: 291 TSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDPDS 350
Query: 239 YIRKFGYKIFSKKV-LEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS 297
+R G F ++ + L +F E++ + + ++++ L + IP ++
Sbjct: 351 LVRAEGTDAFMARINQHSQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIP-GAN 409
Query: 298 LRFKIISSLSKIIKVSFNEINNLFK--INTSSI 328
LR + + L +I + ++ L + TSS+
Sbjct: 410 LRQLMRNRLKEITGLDPQQVEQLAQQAPATSSM 442
>sp|Q8FDG5|PRIM_ECOL6 DNA primase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
/ UPEC) GN=dnaG PE=3 SV=1
Length = 581
Score = 225 bits (574), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLVDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>sp|P0ABS7|PRIM_SHIFL DNA primase OS=Shigella flexneri GN=dnaG PE=3 SV=1
Length = 581
Score = 224 bits (572), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>sp|P0ABS5|PRIM_ECOLI DNA primase OS=Escherichia coli (strain K12) GN=dnaG PE=1 SV=1
Length = 581
Score = 224 bits (572), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>sp|P0ABS6|PRIM_ECO57 DNA primase OS=Escherichia coli O157:H7 GN=dnaG PE=3 SV=1
Length = 581
Score = 224 bits (572), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 170/271 (62%), Gaps = 15/271 (5%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>sp|P07362|PRIM_SALTY DNA primase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC
700720) GN=dnaG PE=3 SV=1
Length = 581
Score = 222 bits (565), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 171/273 (62%), Gaps = 15/273 (5%)
Query: 5 SDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLA 61
+DFY+ L + +K A ++L+KRGL+ EII RF +G+AP W NAL + + +N L
Sbjct: 124 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 183
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G++V+ E+ YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 184 DAGMLVNN-----------EQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 231
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+ VA LGT+ T+
Sbjct: 232 NSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTA 291
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
H+ + TN++I +DGD+AGR AA RALE + Y TD + ++F+FLPD DPD+ +R
Sbjct: 292 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 351
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
K G F ++ +A L F ++ +L +
Sbjct: 352 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSS 384
>sp|P71481|PRIM_LEGPN DNA primase OS=Legionella pneumophila GN=dnaG PE=3 SV=1
Length = 576
Score = 219 bits (557), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 190/329 (57%), Gaps = 17/329 (5%)
Query: 1 MICASDFYKIQLK-NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINT 59
M S +Y+ +LK N + AI++L+ RGL+ EI R++LGYAP W+ L K F NN
Sbjct: 115 MSEVSQYYQKKLKYNGQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNLEKAFP--NNQRE 172
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L S+G+++ K+ YDR+R RIMFPI + +G++IGFGGR++ + K
Sbjct: 173 LLSTGMLIKSDEGKI-----------YDRYRNRIMFPIHDRNGRVIGFGGRVLDKDQKPK 221
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPET LF KS ELYGL + + + +++ EGYMDVI L+Q G VA LGTA
Sbjct: 222 YLNSPETVLFQKSRELYGLHQVLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 281
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
++ HI+ + +T +IF FDGD AG++AA RALE L + F+FLP+++DPDS
Sbjct: 282 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 341
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIE-YLFKIIPLSSSL 298
+R G F + + +A L +FF + + + NL + ++ YL K++ S
Sbjct: 342 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMV--EGSY 399
Query: 299 RFKIISSLSKIIKVSFNEINNLFKINTSS 327
+ +I LS++ + + + NL + S
Sbjct: 400 KQLLIDDLSRLTHIESHRLTNLITDKSES 428
>sp|Q9CLI9|PRIM_PASMU DNA primase OS=Pasteurella multocida (strain Pm70) GN=dnaG PE=3
SV=1
Length = 582
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 140/437 (32%), Positives = 225/437 (51%), Gaps = 39/437 (8%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNA-LNKVFLDYNNINTLASS 63
+ FY+ QL A ++L++RGL+ E+I RF +G+ PN ++A L + + L
Sbjct: 126 AQFYQQQLAQHIPAQSYLQQRGLSPEVISRFQIGFVPNSFDAVLQRFGQQKEDQQKLFDL 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++ E+ K YDRFR RIMFPI++ G+ I FGGR++ D + KY+NS
Sbjct: 186 GMLSRS-----------EQGKIYDRFRHRIMFPIRDRRGKTIAFGGRVLGD-EKPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PE+ +HK NELYGL+EA A E +L+ EGYMDV+ L+QFG VA LGTA T+
Sbjct: 234 PESATYHKGNELYGLYEALQANESPEMLLVVEGYMDVVALAQFGVDYAVASLGTATTAEQ 293
Query: 184 IKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + T I +DGD+AGR AA RA E L Y D + +KF+FLPD DPDS+IR+
Sbjct: 294 IQLLFRSTEQAICCYDGDRAGREAAWRAFENALPYLEDGRQLKFVFLPDGEDPDSFIRQH 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKII 303
G F + + +A+SL +F + + + + K L K IP LR +
Sbjct: 354 GKASFEQYMQKALSLSEFLFTSLAPQVDFSSKEGKTKLAALAVPLIKKIP-GDMLRLSLR 412
Query: 304 SSLSKIIKV-----------SFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLI 352
++L++ + + S++E+ KI S K + + + ++ + L+
Sbjct: 413 NTLAQKLGILDQAQLESLIPSYSEM----KITASPQPVKRTPMRVLIGLLLQNPELAQLV 468
Query: 353 SYPSLINEINSEDMIIFSK----CSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINK 408
S + +N + + K C + Q+++ + D +HSK ++ L N
Sbjct: 469 PDLSPLRTLNEPGLDLLEKLTALCQEKVGITTGQILE----YWRDTEHSKALEILASWNH 524
Query: 409 NFESIIVKIQDNFEYSI 425
E +I++ F+ ++
Sbjct: 525 LVED--TQIEETFKSTL 539
>sp|Q08346|PRIM_HAEIN DNA primase OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=dnaG PE=3 SV=1
Length = 593
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 203/365 (55%), Gaps = 25/365 (6%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
+ FY+ QL + +A +L++RGL+ EII RF +G+ PN + + + F +N
Sbjct: 127 ATFYQNQLPLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKF----GVNREEQQK 182
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ ++++ ++ + YD+FR RIMFPI++ G+ + FGGR++ D + KY+NSP
Sbjct: 183 LIELGMLSRNDRGNI------YDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSP 235
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET +HK ELYGL+EA ++ +L+ EGYMDV+ L+QFG VA LGT+ TS I
Sbjct: 236 ETITYHKGKELYGLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQI 295
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ IL T ++ +DGD+AGR AA RALE L Y D + +KF+FLPD +PD+YIR++G
Sbjct: 296 QLILRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEEPDTYIRQYG 355
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIIS 304
+ F + + A SL +F + + T + K L IP LR + +
Sbjct: 356 KEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP-GEMLRLSLRN 414
Query: 305 SLSKIIKV-SFNEINNLF-----KINTSS-IKHKTIEKKNIQPICIEYQIMKLLISYPSL 357
L++ + + ++ NL + NT + H I+K ++ ++ LL+ P L
Sbjct: 415 MLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPMR------MVISLLMQNPEL 468
Query: 358 INEIN 362
+ ++
Sbjct: 469 VKRMS 473
>sp|P32000|PRIM_BUCAP DNA primase OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=dnaG PE=3 SV=2
Length = 579
Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 167/273 (61%), Gaps = 10/273 (3%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
S Y+ + + A +L +RG+N+ +I F +G++ N+W+ +K F NI
Sbjct: 124 SKLYQKNIIFTNSANKYLTERGINKNMIDFFCIGFSSNKWDLFSKQF----NIKKDFEKD 179
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+ KII+ N++ I YD F+GRI+FPI + G+II FGGR I ++ KY+NS
Sbjct: 180 LLHYKIIS-TNKNGYI-----YDTFQGRIVFPIHDQHGRIISFGGRSITNNILPKYLNSH 233
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
E +FHK ++YGL++ K K Y+L+ EGY+DVI L+Q+ V+ LGT+ T HI
Sbjct: 234 ENDIFHKGKQIYGLYQVKKKHSKPKYLLVVEGYIDVIMLTQYNIEYVVSSLGTSITKEHI 293
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ + +TN++I+ +DGD AGR A+ R L++ L Y +D K IKF+ LP+ DPD+ I+K G
Sbjct: 294 QILFRHTNTVIYCYDGDDAGRNASWRTLKIALPYISDKKNIKFIILPNNEDPDTIIKKEG 353
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKD 277
K F ++ A+++ +FF + I+ N +L + D
Sbjct: 354 QKKFQLRIDNALTMSKFFFKNILKNVDLSSDDD 386
>sp|P57164|PRIM_BUCAI DNA primase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=dnaG PE=3 SV=1
Length = 577
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 186/312 (59%), Gaps = 16/312 (5%)
Query: 2 ICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA 61
IC YK + + A +L +RG+N+ +I F +G++ +WN K NI+
Sbjct: 121 ICK--LYKKNINVTHLANKYLARRGINQNMIDFFLIGFSSLKWNEFYKKI----NISKEF 174
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
L+++ II + YDRF+GRI+FPI++ G+IIGFGGR + D + KY+
Sbjct: 175 EQELLINNIIATDKNGYI------YDRFQGRIIFPIQDNHGRIIGFGGRSLNDMS-PKYL 227
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +F+K ++YGL++ K Y+L+ EGY+DVI L+Q+ V+ILGT+ T+
Sbjct: 228 NSPETDIFYKRKQIYGLYQVIKKCSKPVYLLVVEGYIDVITLTQYNIDYAVSILGTSTTT 287
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + T+ II +DGD AG+ AA + L+ L Y +D K +KF+ LP++ DPD+ IR
Sbjct: 288 EHIQLLFKNTDIIICCYDGDDAGKNAAWKTLKKALPYISDKKTLKFILLPNQEDPDTIIR 347
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSS-SLRF 300
K G + F K++ A+++ +FF + I+ N NL + D +K ++ L I +SS ++R
Sbjct: 348 KEGREKFQKRIDNAITMSKFFFKNILKNINLSS--DDDKFHLSVHALPLINTISSDTIRI 405
Query: 301 KIISSLSKIIKV 312
+ L+++I +
Sbjct: 406 YLRQILARMIGI 417
>sp|Q89B09|PRIM_BUCBP DNA primase OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=dnaG PE=3 SV=1
Length = 578
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 160/275 (58%), Gaps = 15/275 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLD--YNNINTLAS 62
+D Y + ++ A ++ RG+++ +I FNLG++P W L K YN L
Sbjct: 124 ADLYHRNIFKTEYAYQYILNRGIDKSMIKYFNLGFSPKNWYDLEKKNKKQCYNQ-KELQE 182
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
G++ I+ YDRF+ RI+FPI+N +G I+GFGGR + +++ KYIN
Sbjct: 183 IGILKTTILGYT-----------YDRFKNRIIFPIRNKNGNIVGFGGRTL-NNHIPKYIN 230
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPET +FHK +LYGL+E K +LI EGY+DVI L QF T++ LGT ++
Sbjct: 231 SPETQIFHKGFQLYGLYEMLKTNPKPKQILIVEGYVDVIALVQFKINYTISTLGTIISNE 290
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
IK + +N+IIF +DGD +G++AA R L + L + D K +KF+FLP+ DPDS IRK
Sbjct: 291 QIKLLFRTSNTIIFCYDGDVSGQKAAWRTLNISLSHIHDGKNVKFIFLPNNEDPDSIIRK 350
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKD 277
G+ F ++ +++ +F L+ + +L +I +
Sbjct: 351 EGHDNFKIRIKKSIDFSKFLLQTLFKKTDLNSISE 385
>sp|Q9KD44|PRIM_BACHD DNA primase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197
/ FERM 7344 / JCM 9153 / C-125) GN=dnaG PE=3 SV=1
Length = 599
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 149/263 (56%), Gaps = 16/263 (6%)
Query: 13 KNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTLASSGLVVDKII 71
+ K +L++RG +E I F +G+AP W+AL V + ++ SGL+V++
Sbjct: 133 EEGKAGRTYLERRGFTKEQIEHFQIGFAPPHWDALTNVLAKRDVDLKKAGESGLLVERES 192
Query: 72 NKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHK 131
+ KRYDRFR R++FPI+N G+I+ FGGR + D ++ KY+NSPE+P+F K
Sbjct: 193 DG----------KRYDRFRNRVIFPIRNGKGKIVAFGGRTLGD-DKPKYLNSPESPIFQK 241
Query: 132 SNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYT 191
LYG ++A+ AI K ++ EGY+DVI + G VA LGT+ T + I
Sbjct: 242 GKLLYGFYQARPAIRKENEAVLFEGYVDVIAAWKAGVTNGVATLGTSLTEEQARMIRRNA 301
Query: 192 NSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKK 251
++I DGD AG A R+ + L + +K +PD DPD YI+K+G + F K
Sbjct: 302 ETVIICNDGDAAGAEATFRSAD---LLQQEGCHVKVAMIPDGLDPDDYIQKYGAERFKKD 358
Query: 252 VL-EAMSLLQFFLEEIILNYNLK 273
V+ E+++L++F ++ + NL+
Sbjct: 359 VIGESLTLMKFKMKYFRMGRNLQ 381
>sp|P33655|PRIM_CLOAB DNA primase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM
792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=dnaG PE=3
SV=1
Length = 596
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 121/387 (31%), Positives = 210/387 (54%), Gaps = 39/387 (10%)
Query: 2 ICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA 61
+ A+ ++ L ++ +A + RG+N++ + RF LGYA ++W L ++ +
Sbjct: 121 VEAARYFFRNLDSNSKAKKYFLDRGINQKTMRRFGLGYAKDDWRQL---------LSFMK 171
Query: 62 SSGLVVDKIINKVNQSPVIEKYKR-YDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
S G ++I +++K K YDRFR R++FP+ + G++IGFGGR++ DS + KY
Sbjct: 172 SKGYTELELIE---AGLIVQKNKAVYDRFRNRVIFPVFDYKGKVIGFGGRVLDDS-KPKY 227
Query: 121 INSPETPLFHKSNELYGL-FEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
+NSPET +F K LYGL F KN I + ++I EGYMD I L Q+G VA LGTA
Sbjct: 228 LNSPETKIFKKGTNLYGLNFAVKNNIGDT--IIIVEGYMDCISLHQYGINNVVASLGTAL 285
Query: 180 TSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
T K + Y + ++ S+D D AG+ A R ++ D KIIK +PD DPD +
Sbjct: 286 TKDQAKLLKRYASKVVISYDADTAGQAATLRGFDILREAGFDIKIIK---IPDGKDPDEF 342
Query: 240 IRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNI-EYLFKIIPLSSSL 298
+RK G + F + V A+S++ + + N NLK + + K +I E + ++ P+ +
Sbjct: 343 VRKNGKEAFMRLVENAVSIIDYRINRAFENVNLKDSESVIKYVKDISEIIEELDPVEKDV 402
Query: 299 RFKIISSLSKIIKVSFNEI---------NNLFKINTSSIKHKT--IEKKNIQPICIEYQI 347
K IS + I + + ++ NN+ K+N +S + +E +++ E +
Sbjct: 403 YIKKISDKTGIREQAIYDLISTDIQKSGNNIEKMNKNSNYGQNLYVESAHVKS---ERYL 459
Query: 348 MKLLISYPSLI----NEINSEDMIIFS 370
++L+I + + ++I+++D+I+ S
Sbjct: 460 LRLMIEHKDIRSYIESKISADDLIMES 486
>sp|Q92FZ7|PRIM_RICCN DNA primase OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7)
GN=dnaG PE=3 SV=1
Length = 595
Score = 166 bits (419), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 195/382 (51%), Gaps = 49/382 (12%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTLAS 62
A+ F++ QL + E +++L +RG+ EE + F++G+AP N K F D N +I L
Sbjct: 119 ANKFFRTQL--TPEILHYLHERGITEETVKEFSIGFAPKN-NKFEKFFHDKNIDIIKLGK 175
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GL+ + E + Y+ F RI PI+N +I+GFGGR++ + KY+N
Sbjct: 176 AGLIGKR-----------ENGEIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLN 223
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPET +F KS LYG +A ++ K + ++ EGY DVI L Q GF +TVA LGT+ T
Sbjct: 224 SPETTVFQKSETLYGEHKAISSSYKKNHSILVEGYFDVIALHQAGFSETVASLGTSVTEN 283
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+ K+ + II DGD AG +A+ R + + L +K I F+ LP DPD + K
Sbjct: 284 HLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPSGLDPDDAVNK 343
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
G F+K + + +SL + + Y+ K+ K E+ K N+E K
Sbjct: 344 NGADFFAKLIDKRISLSEMIWH---IEYSGKSFKTAEE-KANLEKNLK------------ 387
Query: 303 ISSLSKI----IKVSFNEI--NNLFKINTSSIKHKTIEKKNIQPI----------CIEYQ 346
+ SKI +KVS+ + +++ ++ K T + N+ PI +E+
Sbjct: 388 -NYCSKISDSDLKVSYYRFFKDQIWQNLVTTQKKATTKNSNLAPIISSHGYSELEILEHA 446
Query: 347 IMKLLISYPSLINEINSEDMII 368
LL+ +P ++ E + D I+
Sbjct: 447 FCALLVKFPIILEEKDIRDFIL 468
>sp|Q4UJT0|PRIM_RICFE DNA primase OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
GN=dnaG PE=3 SV=1
Length = 595
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/284 (35%), Positives = 157/284 (55%), Gaps = 20/284 (7%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTLAS 62
A+ F++ QL + E +N+L +RG+ EE + F++G+AP N K F D N +I L
Sbjct: 119 ANKFFRTQL--TPEILNYLHERGITEETVKEFSIGFAPKN-NKFEKFFHDKNIDIIKLGK 175
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GL+ + E + Y+ F RI PI+N +I+GFGGR++ + KY+N
Sbjct: 176 AGLIGKR-----------ENGEIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLN 223
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPET +F KS LYG +A ++ K + ++ EGY DVI L Q GF + VA LGT+ T
Sbjct: 224 SPETTVFQKSETLYGEHKAISSSYKKNHSILVEGYFDVIALHQAGFSEAVASLGTSVTEN 283
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+ K+ + II DGD AG +A+ R + + L +K I F+ LP+ DPD + K
Sbjct: 284 HLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPNGLDPDDAVNK 343
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIE 286
G F+K + + +SL + + Y+ K+ K E+ K N+E
Sbjct: 344 NGADFFAKLIDKRISLSEMIWH---IEYSGKSFKTAEE-KANLE 383
>sp|P74143|PRIM_SYNY3 DNA primase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dnaG
PE=3 SV=1
Length = 635
Score = 162 bits (410), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 158/290 (54%), Gaps = 21/290 (7%)
Query: 1 MICASDFYKIQL--KNSKEAINFL-KKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNN- 56
M A+ FY L +EA+ +L +KR L+ I F LGYAP W L + ++
Sbjct: 123 MAVAAGFYHHTLFQPQGQEALTYLDQKRCLSSATIQEFQLGYAPAGWETLYRYLVEQKRY 182
Query: 57 -INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDS 115
+ + +GL+ K QS YD+FR R+M PI++ G+ I FG R + +
Sbjct: 183 PVAAVEQAGLI------KARQSGT----GYYDQFRHRLMIPIRDVQGKTIAFGSRTLGN- 231
Query: 116 NEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAIL 175
+E KY+NSPETPLFHKS L+GL +AK AI+K ++ EGY DVI L + G QTVA L
Sbjct: 232 DEPKYLNSPETPLFHKSKTLFGLDQAKTAIQKVDEAILVEGYFDVIALHESGIKQTVAAL 291
Query: 176 GTACTSTHIKKILFYTNS--IIFSFDGDQAGRRAARRAL-EVCLLYATDDKIIKFLFLPD 232
G A + ++ ++ ++ S IIF+FD D+AG A +RA+ E+ L + ++ L LP
Sbjct: 292 GIALSRDQVQSLMRFSQSKQIIFNFDADKAGINATQRAIQEIEPLVYSGQVNLRILNLPA 351
Query: 233 KYDPDSYIRKFGY--KIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK 280
D D +I +I+ V +A + + +++++ NLK D E+
Sbjct: 352 GKDADEFIHSSAENKEIYQTLVKQAPLWVDWQIQQLLKQKNLKDPLDFEQ 401
>sp|Q1RKH8|PRIM_RICBR DNA primase OS=Rickettsia bellii (strain RML369-C) GN=dnaG PE=3
SV=1
Length = 599
Score = 161 bits (408), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 186/376 (49%), Gaps = 39/376 (10%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINT-LAS 62
A+ F+K QL + E +N+L +R + E I F++G+AP N K F D N N L
Sbjct: 119 ANKFFKSQL--TPEILNYLNERNITNETIKEFSIGFAP-RGNKFEKFFHDKNITNVQLGK 175
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GL+ + E + Y F RI PI+N +I+GFGGR+I KY+N
Sbjct: 176 AGLIGKR-----------EDGEIYSLFSNRITIPIRNIYNKIVGFGGRVI-GQGLPKYLN 223
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPET +F KS LYG +A ++ K Y ++ EGY DVI L Q GF + VA LGT+ T
Sbjct: 224 SPETVVFQKSETLYGEHKAISSSYKKNYSILVEGYFDVISLHQAGFSEVVASLGTSVTEN 283
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+ K+ + II DGD AG +A+ R + + L +K I F+ LP DPD + K
Sbjct: 284 HLHKLWRAGDEIILCLDGDSAGIKASVRTINLALPLINSEKKISFIRLPTGLDPDDAVNK 343
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNI-EYLFKIIPLSSSLRFK 301
G F+K + +SL + + N KT +D + N+ +Y KI S+LR
Sbjct: 344 NGVDFFTKLIDTRISLSEMIWQIEYAGKNFKTAEDKANLEKNLKDYCSKIS--DSNLR-- 399
Query: 302 IISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKK-NIQPIC--------IEYQIMKLLI 352
+S + K + N + + KT+ K N+ P+ +E+ LLI
Sbjct: 400 --ASYYRFFKDQIWQ-------NLVTKQQKTVAKNVNLLPLSSGYSELEILEHAFCALLI 450
Query: 353 SYPSLINEINSEDMII 368
+P ++ E ++ I+
Sbjct: 451 KFPQILQEFEIKEFIL 466
>sp|P74893|PRIM_SYNE7 DNA primase OS=Synechococcus elongatus (strain PCC 7942) GN=dnaG
PE=1 SV=3
Length = 694
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 171/333 (51%), Gaps = 22/333 (6%)
Query: 1 MICASDFYKIQLKNSK--EAINFLKK-RGLNEEIILRFNLGYAPNEWNALNKVFLDYNN- 56
+ A+ FY+ L+ + A+++L++ R L E I +F LGYAP +W +L ++
Sbjct: 123 LAVATQFYEQSLRRPEGAAALDYLRRSRQLQESTIQKFQLGYAPAQWASLATHLIEQKRF 182
Query: 57 -INTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDS 115
+ + +GLVV + + YDRFR R+M PI + G+++GFGGR +
Sbjct: 183 PADLVEEAGLVVARRNGQ----------GYYDRFRDRLMIPIHDLQGRVVGFGGRTLT-G 231
Query: 116 NEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAIL 175
E KY+NSPET LF K L+GL +A+ AI K ++ EGY DVI L G VA L
Sbjct: 232 EEPKYLNSPETTLFEKGKLLFGLDKARAAIAKQDQAVVVEGYFDVIALHAAGIDHAVASL 291
Query: 176 GTACTSTHIKKILFY--TNSIIFSFDGDQAGRRAARRAL-EVCLLYATDDKIIKFLFLPD 232
GTA + +K + Y +N I+ +FD D+AG +AA RA+ EV L ++ L LP
Sbjct: 292 GTALSRQQVKLLSRYSESNQIVLNFDADRAGAKAAERAIGEVEDLAYQGQVQLRVLNLPG 351
Query: 233 KYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKII 292
D D Y+++ + + + + L + +++++ + NL + I L +
Sbjct: 352 GKDADEYLQRHSVADYRELLARSPLWLDWQIDQLLRDRNLDQADQFQAVVQAIVQLLGKL 411
Query: 293 PLSSSLRFKIISSLSKIIKVSFNEINNLFKINT 325
P ++ LR + +++ ++S E ++ +
Sbjct: 412 P-NTPLRTHYVHQVAE--RLSQGEARTAVQLAS 441
>sp|O67465|PRIM_AQUAE DNA primase OS=Aquifex aeolicus (strain VF5) GN=dnaG PE=1 SV=1
Length = 498
Score = 155 bits (391), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 140/243 (57%), Gaps = 17/243 (6%)
Query: 2 ICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA 61
+C DFY+ L ++EA ++K RG++ ++ +F+LGYAP+ AL KV + N L
Sbjct: 110 VC--DFYRESLLKNREASEYVKSRGIDPKVARKFDLGYAPSS-EALVKVLKE----NDLL 162
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+ L ++ SP Y+ D F R++ PIK+ G++IGFGGR I + KYI
Sbjct: 163 EAYLETKNLL-----SPTKGVYR--DLFLRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYI 215
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSP++ +F K L+GL+EAK I++ G+ ++ EGY D++ L G VA LGTA T
Sbjct: 216 NSPDSRVFKKGENLFGLYEAKEYIKEEGFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQ 275
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
+ +T + +DGD AGR+A + A+ + L + + ++LP+ YDPD +I+
Sbjct: 276 NQANLLSKFTKKVYILYDGDDAGRKAMKSAIPLLLSAGVE---VYPVYLPEGYDPDEFIK 332
Query: 242 KFG 244
+FG
Sbjct: 333 EFG 335
>sp|P52308|PRIM_ENTFA DNA primase OS=Enterococcus faecalis (strain ATCC 700802 / V583)
GN=dnaG PE=3 SV=2
Length = 628
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 139/255 (54%), Gaps = 22/255 (8%)
Query: 4 ASDFYKIQLKNSK---EAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
A++ Y L N+K A+N+L +RGL +E+I F +G+AP + + L++VF + TL
Sbjct: 126 AAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKNEQLDETL 185
Query: 61 -ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN--- 116
SGL V + + DRF RIMFPI + G +I F GRL+K ++
Sbjct: 186 FEPSGLFVQR-----------DNGTFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPG 234
Query: 117 --EAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAI 174
KY+NSPET LF+K L+ A+ I K VL+ EG+MDVI Q G VA
Sbjct: 235 DEMPKYLNSPETTLFNKRETLFNFDRARKEIRKENTVLLFEGFMDVIAAWQSGVKSGVAS 294
Query: 175 LGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKY 234
+GT+ T+ I+++ ++ +DGD AG +A RA++ LL + + +P+K
Sbjct: 295 MGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQ--LLQENSHFDLSIVSIPEKL 352
Query: 235 DPDSYIRKFGYKIFS 249
DPD Y+RK+G + F
Sbjct: 353 DPDEYVRKYGAEAFQ 367
>sp|Q9RWR5|PRIM_DEIRA DNA primase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM
20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 /
R1 / VKM B-1422) GN=dnaG PE=3 SV=1
Length = 571
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 184/383 (48%), Gaps = 56/383 (14%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTLAS 62
A D+++ L A+++L+ RGL++E I F LGYAP+ W+ L K+ + L
Sbjct: 96 ALDYFRSHLPGP--ALDYLRGRGLSDETIAAFELGYAPDGWDGLLKLARTKGVSEKQLLE 153
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GL+ ++P E + YDRFRGR+MFPI++ G+++GFGGR++ DS + KY+N
Sbjct: 154 AGLLT--------ENP--ENGRVYDRFRGRVMFPIRDHLGRLVGFGGRVLDDS-KPKYLN 202
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
+PET F K LYGL +A++ + +++ EGYMDVI + Q GF VA LGTA T+
Sbjct: 203 TPETAAFKKGELLYGLDKARSGLGGGAELVVVEGYMDVISMHQHGFTGAVASLGTALTAE 262
Query: 183 HIKKI-LFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLF------LPDKYD 235
H + + SI+ FD D AG +A L D++I F +P D
Sbjct: 263 HAQLLERLGAQSIVLMFDQDGAGLKATLAGL---------DQVIGAKFRVRATSVPSGKD 313
Query: 236 PDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLS 295
P + + + + +++ ++ Y + D + K + L +++P
Sbjct: 314 PADALLAGDDAGIREALAGGLDEVKYRVQAATEKYGV----DTNEGKRRV--LMELLP-- 365
Query: 296 SSLRFKIISSLSKIIKVSFNEINNLFKIN--------TSSIKHKTIEKKNIQPICI---- 343
R + + L I + L I TS K +T+ ++ +
Sbjct: 366 ---RMQNLDPLDAIAQDMRGAACELLGIRPEALLDWITSKAKRRTLTDTHLAGMSQSSGE 422
Query: 344 ---EYQIMKLLISYPSLINEINS 363
E +++ L+ PSL+ +++
Sbjct: 423 EEHELALLRQLLVDPSLLAKLDG 445
>sp|P47762|PRIM_LISMO DNA primase OS=Listeria monocytogenes serovar 1/2a (strain ATCC
BAA-679 / EGD-e) GN=dnaG PE=3 SV=2
Length = 626
Score = 152 bits (384), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 131/243 (53%), Gaps = 16/243 (6%)
Query: 10 IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN--NINTLASSGLVV 67
++ + A+ +LK+RG++E+++ F +G+APN + FL+ ++ ++GL+
Sbjct: 135 METEEGTAALTYLKERGMSEQMMTTFQIGFAPNHHATITS-FLEKRGMDLQLAGAAGLLS 193
Query: 68 DKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETP 127
++ ++ DRFR RIMFPI N GQII F GRL + KY+NSPETP
Sbjct: 194 ERDDGQM-----------VDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYLNSPETP 242
Query: 128 LFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKI 187
+F+K L+ EA+ AI K + + EG+MDVI + G VA +GT+ T H I
Sbjct: 243 VFNKRRILFHFSEARQAIRKQEEITLMEGFMDVISAEEAGVQNAVASMGTSLTEEHADLI 302
Query: 188 LFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKI 247
TN I +DGD+AG AA +A LL + + L LP DPD +IR G +
Sbjct: 303 KRLTNRAIICYDGDRAGIEAAYKA--GTLLVERNRLDVFVLQLPAGKDPDDFIRASGPEK 360
Query: 248 FSK 250
F +
Sbjct: 361 FKE 363
>sp|P30103|PRIM_RICPR DNA primase OS=Rickettsia prowazekii (strain Madrid E) GN=dnaG PE=3
SV=1
Length = 593
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 141/257 (54%), Gaps = 18/257 (7%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTLAS 62
A+ F++ QL + E +N+L KR + E I F++G+AP N K FLD +I L
Sbjct: 119 ANKFFRTQL--TPEILNYLYKRNITETTIKEFSIGFAPRN-NKFEKFFLDKKIDITKLGQ 175
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNE-AKYI 121
+GL I K + Y+ F RI PI+N +I+GFGGR++ NE KY+
Sbjct: 176 AGL-----IGKCKNGKI------YNLFSNRITIPIRNIYNKIVGFGGRVL--GNELPKYL 222
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NS ET +F KS+ LYG +A ++ K ++ EGY DVI L Q GF + VA LGT+ T
Sbjct: 223 NSFETIVFQKSDILYGEHKAISSSYKKNRSILVEGYFDVIALHQAGFNEVVASLGTSVTE 282
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
+H+ K+ + II DGD AG +A+ R + + L +K I F+ LP DPD +
Sbjct: 283 SHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLVNSEKKISFIRLPSGLDPDDAVN 342
Query: 242 KFGYKIFSKKVLEAMSL 258
K G F+K + + +SL
Sbjct: 343 KNGADFFAKLIDKRISL 359
>sp|Q92BQ5|PRIM_LISIN DNA primase OS=Listeria innocua serovar 6a (strain CLIP 11262)
GN=dnaG PE=3 SV=1
Length = 626
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 129/243 (53%), Gaps = 16/243 (6%)
Query: 10 IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN--NINTLASSGLVV 67
++ + A+ +LK+RG++E+++ F +G+APN + FL+ ++ ++GL+
Sbjct: 135 METEEGAAALTYLKERGMSEQMMASFQIGFAPNHHATITS-FLEKRGMDLQLAGTAGLLS 193
Query: 68 DKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETP 127
++ ++ DRFR RIMFPI N GQI F GRL + KY+NSPETP
Sbjct: 194 ERDDGQM-----------VDRFRNRIMFPITNDRGQINAFSGRLFDRDDGPKYLNSPETP 242
Query: 128 LFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKI 187
+F+K L+ EA+ AI K + + EG+MDVI + G VA +GT+ T H I
Sbjct: 243 IFNKRRTLFHFSEARQAIRKQEEITLMEGFMDVISAEEAGVQNAVASMGTSLTEEHADLI 302
Query: 188 LFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKI 247
TN I +DGD+AG AA +A LL + + L LP DPD +IR G
Sbjct: 303 KRLTNRAIICYDGDRAGIEAAYKA--GTLLVERNRLDVFVLQLPAGKDPDDFIRASGADK 360
Query: 248 FSK 250
F +
Sbjct: 361 FKE 363
>sp|P05096|PRIM_BACSU DNA primase OS=Bacillus subtilis (strain 168) GN=dnaG PE=3 SV=2
Length = 603
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 157/295 (53%), Gaps = 18/295 (6%)
Query: 10 IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTLASSGLVVD 68
I K +EA+++L RG +E+I F +GYA + W+ + K + + + +GL
Sbjct: 133 INTKEGQEALDYLLSRGFTKELINEFQIGYALDSWDFITKFLVKRGFSEAQMEKAGL--- 189
Query: 69 KIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPL 128
+I + + S +DRFR R+MFPI + G ++ F GR + S + KY+NSPETPL
Sbjct: 190 -LIRREDGSGY------FDRFRNRVMFPIHDHHGAVVAFSGRAL-GSQQPKYMNSPETPL 241
Query: 129 FHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKIL 188
FHKS LY ++A+ I K ++ EG+ DVI +++A +GT+ T H+K +
Sbjct: 242 FHKSKLLYNFYKARLHIRKQERAVLFEGFADVISAVSSDVKESIATMGTSLTDDHVKILR 301
Query: 189 FYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIF 248
II +D D+AG A +A E LL K ++ +PD DPD YI+KFG + F
Sbjct: 302 RNVEEIILCYDSDKAGYEATLKASE--LLQKKGCK-VRVAMIPDGLDPDDYIKKFGGEKF 358
Query: 249 SKKVLEA-MSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKI 302
+++A ++++ F ++ NL D + Y + L +I LS SL ++
Sbjct: 359 KNDIIDASVTVMAFKMQYFRKGKNLSDEGD--RLAYIKDVLKEISTLSGSLEQEV 411
>sp|Q68VQ4|PRIM_RICTY DNA primase OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington)
GN=dnaG PE=3 SV=1
Length = 593
Score = 149 bits (376), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 16/256 (6%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTLAS 62
A+ F++ QL + E +N+L +R + E I F++G++P N K FLD +I TL
Sbjct: 119 ANKFFRTQL--TPEILNYLNQRNITETTIKEFSIGFSPRN-NKFAKFFLDKKIDITTLGQ 175
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GL+ + ++ Y+ F RI PI+N +I+GFG R++ + KY+N
Sbjct: 176 AGLIGKRKNGEI-----------YNLFSNRITIPIRNIYNKIVGFGARVLGNG-LPKYLN 223
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
S ET +F K++ LYG +A ++ K ++ EGY DVI L Q GF + VA LGT+ T
Sbjct: 224 SYETIVFQKNDTLYGEHKAISSSYKKNRSILVEGYFDVIALHQAGFSEVVASLGTSVTEN 283
Query: 183 HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
H+ K+ + II DGD AG +A+ R + + L +K I F+ LP DPD + K
Sbjct: 284 HLHKLWRACDEIILCLDGDNAGIKASIRTINLALPLVNSEKKISFIRLPSGLDPDDVVNK 343
Query: 243 FGYKIFSKKVLEAMSL 258
G F+K + + +SL
Sbjct: 344 NGADFFAKLIDKRISL 359
>sp|Q8CP23|PRIM_STAES DNA primase OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=dnaG PE=3 SV=1
Length = 598
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 184/369 (49%), Gaps = 43/369 (11%)
Query: 6 DFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN--NINTL 60
D+Y L + +EA+N+L +RG +++I +GYAP+ + + FL+ +I
Sbjct: 124 DYYHYALMKTVEGEEALNYLHERGFTDDLIKEREIGYAPDNSHFCHD-FLEKKGYDIELA 182
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GL+ S E + +DRFR RIMFP+KN G+I+G+ GR D E KY
Sbjct: 183 FEAGLL----------SRNEENFTYFDRFRNRIMFPLKNGQGRIVGYSGRTYTDQ-EPKY 231
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETP+F K LY L +A+ I K +++ EG+MDVI G Q VA +GT +
Sbjct: 232 LNSPETPIFQKRRILYNLNKARKFIRKQDEIILLEGFMDVIKSDYAGLKQVVASMGTQLS 291
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
HI + T ++ FDGD AG+ A + + L + +++ LP DPD YI
Sbjct: 292 QEHITFLQKLTQNVTLMFDGDYAGKEATLKTGQALLNQGLNVYVVQ---LPSGMDPDDYI 348
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS-LR 299
RK+ + F K V + F L ++ + N D+ K+ E + + ++S +R
Sbjct: 349 RKYDNEQFLKFVQQDKQ--SFVLFKVKMYQNEINHNDLAYEKHFKETVRDLSLVNSGIIR 406
Query: 300 FKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLIN 359
K+I +++ I FK+N +I+++ + YQ +YP+ +
Sbjct: 407 NKLIQNIADI-----------FKVNPETIQYE---------LDATYQHQMSSNTYPTFQD 446
Query: 360 EINSEDMII 368
E + + +I+
Sbjct: 447 EPSKQQLIL 455
>sp|Q5HNY6|PRIM_STAEQ DNA primase OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=dnaG PE=3 SV=1
Length = 598
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 184/369 (49%), Gaps = 43/369 (11%)
Query: 6 DFYKIQLKNS---KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN--NINTL 60
D+Y L + +EA+N+L +RG +++I +GYAP+ + + FL+ +I
Sbjct: 124 DYYHYALMKTVEGEEALNYLHERGFTDDLIKEREIGYAPDNSHFCHD-FLEKKGYDIELA 182
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY 120
+GL+ S E + +DRFR RIMFP+KN G+I+G+ GR D E KY
Sbjct: 183 FEAGLL----------SRNEENFTYFDRFRNRIMFPLKNGQGRIVGYSGRTYTDQ-EPKY 231
Query: 121 INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT 180
+NSPETP+F K LY L +A+ I K +++ EG+MDVI G Q VA +GT +
Sbjct: 232 LNSPETPIFQKRRILYNLNKARKFIRKQDEIILLEGFMDVIKSDYAGLKQVVASMGTQLS 291
Query: 181 STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI 240
HI + T ++ FDGD AG+ A + + L + +++ LP DPD YI
Sbjct: 292 QEHITFLQKLTQNVTLMFDGDYAGKEATLKTGQALLNQGLNVYVVQ---LPSGMDPDDYI 348
Query: 241 RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSS-LR 299
RK+ + F K V + F L ++ + N D+ K+ E + + ++S +R
Sbjct: 349 RKYDNEQFLKFVQQDKQ--SFVLFKVKMYQNEINHNDLAYEKHFKETVRDLSLVNSGIIR 406
Query: 300 FKIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLIN 359
K+I +++ I FK+N +I+++ + YQ +YP+ +
Sbjct: 407 NKLIQNIADI-----------FKVNPETIQYE---------LDATYQHQMSSNTYPTFQD 446
Query: 360 EINSEDMII 368
E + + +I+
Sbjct: 447 EPSKQQLIL 455
>sp|P56064|PRIM_HELPY DNA primase OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=dnaG PE=3 SV=1
Length = 559
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 140/268 (52%), Gaps = 16/268 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
S Y+ +L N+ +N+L+KRGL+ E I F LG N +DY + + G
Sbjct: 115 SSLYQEELFNAPFFLNYLQKRGLSLESIKAFKLGLCTNR--------IDYG----IENKG 162
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L DK+I K Y RF RIMFPI + Q++GFGGR +K+ AKYINSP
Sbjct: 163 LNKDKLIELGVLGKSDNDQKTYLRFLDRIMFPIYSPSAQVVGFGGRTLKE-KAAKYINSP 221
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
++ LF KS+ LYG AK I K V++TEGY+DVI L Q GF +A LGTA T +H+
Sbjct: 222 QSKLFDKSSLLYGYHLAKEHIYKQKQVIVTEGYLDVILLHQAGFKNAIATLGTALTPSHL 281
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I+ S+DGD+AGR AA +A L+ A + + + + DP I
Sbjct: 282 PLLKKGDPEILLSYDGDKAGRNAAYKA---SLMLAKEQRRGGVILFENNLDPADMIANGQ 338
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNL 272
+ + M+ ++F L + +Y L
Sbjct: 339 IETLKNWLSHPMAFIEFVLRRMADSYLL 366
>sp|Q9ZN49|PRIM_HELPJ DNA primase OS=Helicobacter pylori (strain J99) GN=dnaG PE=3 SV=1
Length = 559
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 142/268 (52%), Gaps = 16/268 (5%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
S Y+ +L N+ +N+L+KRGL+ E I F LG N+ +DY + + G
Sbjct: 115 SSLYQEELFNAPFFLNYLQKRGLSMESIKAFKLGLCTNK--------IDYG----IENKG 162
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L DK+I ++ K Y RF RIMFPI + Q++GFGGR +K+ AKYINSP
Sbjct: 163 LNKDKLIELGVLGKSDKEDKTYLRFLDRIMFPIYSPSAQVVGFGGRTLKE-KAAKYINSP 221
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
+ LF KS+ LYG AK I K V++TEGY+DVI L Q GF +A LGTA T +H+
Sbjct: 222 QNKLFDKSSLLYGYHLAKEHIYKQKQVIVTEGYLDVILLHQAGFKNAIATLGTALTPSHL 281
Query: 185 KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I+ S+DGD+AGR AA +A L+ A + + + + DP I
Sbjct: 282 PLLKKGDPEILLSYDGDKAGRNAAYKA---SLMLAKEQRKGGVILFENNLDPADMIANHQ 338
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNL 272
+ + ++ ++F L + +Y L
Sbjct: 339 IETLKNWLSRPIAFIEFVLRHMAGSYLL 366
>sp|Q9S1N4|PRIM_STRCO DNA primase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2)
/ M145) GN=dnaG PE=3 SV=1
Length = 641
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 139/280 (49%), Gaps = 23/280 (8%)
Query: 4 ASDFYKIQLKNSKEAIN---FLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
A+ +Y QL EA FL RG ++ F +GY+P W+ L + FL +
Sbjct: 124 AAQWYAEQLATGPEADTGRAFLADRGFDQAAAEHFGVGYSPQGWDHLTR-FLRGKGFS-- 180
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGR-LIKDSNEAK 119
L++ + + + P+ DRFRGR+M+PI++ G ++GFG R L + N K
Sbjct: 181 -DKELLLSGLSQEGRRGPI-------DRFRGRLMWPIRDIGGDVVGFGARKLYEADNGPK 232
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+N+P+T ++ KS LYG+ AK I K+ ++ EGY DV+ G +A GTA
Sbjct: 233 YLNTPDTAIYKKSQVLYGIDLAKKDIAKASRAVVVEGYTDVMACHLAGVTTAIATCGTAF 292
Query: 180 TSTHIK---KILFYTNS--IIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKY 234
HIK ++L S +IF+FDGD AG++AA RA E +A + I PD
Sbjct: 293 GGDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAAETYIA---IAPDGM 349
Query: 235 DPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
DP G + V L +F L +I+ Y+L T
Sbjct: 350 DPCDLRLAKGDDAVADLVEPRTPLFEFALRQIVARYDLDT 389
>sp|P50070|PRIM_MYXXA DNA primase OS=Myxococcus xanthus GN=dnaG PE=3 SV=1
Length = 606
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 122/235 (51%), Gaps = 14/235 (5%)
Query: 11 QLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLVVDKI 70
Q + A ++ RG+++E + F LG+AP EW +L + F + A +GLV+
Sbjct: 128 QQDEGRSARAYIASRGVSDETAMAFGLGWAPLEWASLTERFQKLGMLEWAAKAGLVL--- 184
Query: 71 INKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFH 130
K N + Y YD FR R+M PI+ +G+ I FGGRLI KY+NS E+ L++
Sbjct: 185 --KRNSG---DGY--YDFFRSRVMVPIRAPEGRPIAFGGRLIGADEGPKYLNSRESRLYN 237
Query: 131 KSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKI-LF 189
KS L+G+ ++++ I K ++ EGY D +GL Q G VA+ T T+ H++ +
Sbjct: 238 KSETLFGMDQSRDEIRKRKAAVLVEGYFDALGLHQVGVRHAVALCSTNLTAGHMQVLKRA 297
Query: 190 YTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+I DGD AG A R L LL A + LP DPD++ R+ G
Sbjct: 298 EARELILLLDGDSAGLAAVER-LSGPLLAA--GATARVALLPQGDDPDTFARREG 349
>sp|P63965|PRIM_STAAN DNA primase OS=Staphylococcus aureus (strain N315) GN=dnaG PE=3
SV=1
Length = 605
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 125/237 (52%), Gaps = 17/237 (7%)
Query: 15 SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN--NINTLASSGLVVDKIIN 72
++A+ +L++RG + +I +G+AP+ + + FL +I +GL+
Sbjct: 136 GEQALTYLQERGFTDALIKERGIGFAPDSSHFCHD-FLQKKGYDIELAYEAGLL------ 188
Query: 73 KVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKS 132
S E + YDRFR RIMFP+KN G+I+G+ GR E KY+NSPETP+F K
Sbjct: 189 ----SRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYT-GQEPKYLNSPETPIFQKR 243
Query: 133 NELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTN 192
LY L +A+ +I K +++ EG+MDVI G VA +GT + HI I T+
Sbjct: 244 KLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRKLTS 303
Query: 193 SIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFS 249
+I FDGD AG A + + L + +I+ LP DPD YI K+G F+
Sbjct: 304 NITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQ---LPSGMDPDEYIGKYGNDAFT 357
>sp|P63964|PRIM_STAAM DNA primase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=dnaG PE=3 SV=1
Length = 605
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 125/237 (52%), Gaps = 17/237 (7%)
Query: 15 SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN--NINTLASSGLVVDKIIN 72
++A+ +L++RG + +I +G+AP+ + + FL +I +GL+
Sbjct: 136 GEQALTYLQERGFTDALIKERGIGFAPDSSHFCHD-FLQKKGYDIELAYEAGLL------ 188
Query: 73 KVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKS 132
S E + YDRFR RIMFP+KN G+I+G+ GR E KY+NSPETP+F K
Sbjct: 189 ----SRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYT-GQEPKYLNSPETPIFQKR 243
Query: 133 NELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTN 192
LY L +A+ +I K +++ EG+MDVI G VA +GT + HI I T+
Sbjct: 244 KLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRKLTS 303
Query: 193 SIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFS 249
+I FDGD AG A + + L + +I+ LP DPD YI K+G F+
Sbjct: 304 NITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQ---LPSGMDPDEYIGKYGNDAFT 357
>sp|O05338|PRIM_STAAU DNA primase OS=Staphylococcus aureus GN=dnaG PE=1 SV=2
Length = 605
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 125/237 (52%), Gaps = 17/237 (7%)
Query: 15 SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN--NINTLASSGLVVDKIIN 72
++A+ +L++RG + +I +G+AP+ + + FL +I +GL+
Sbjct: 136 GEQALTYLQERGFTDALIKERGIGFAPDSSHFCHD-FLQKKGYDIELAYEAGLL------ 188
Query: 73 KVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKS 132
S E + YDRFR RIMFP+KN G+I+G+ GR E KY+NSPETP+F K
Sbjct: 189 ----SRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYT-GQEPKYLNSPETPIFQKR 243
Query: 133 NELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTN 192
LY L +A+ +I K +++ EG+MDVI G VA +GT + HI I T+
Sbjct: 244 KLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRKLTS 303
Query: 193 SIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFS 249
+I FDGD AG A + + L + +I+ LP DPD YI K+G F+
Sbjct: 304 NITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQ---LPSGMDPDEYIGKYGNDAFT 357
>sp|Q6GGD7|PRIM_STAAR DNA primase OS=Staphylococcus aureus (strain MRSA252) GN=dnaG PE=3
SV=1
Length = 599
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 125/237 (52%), Gaps = 17/237 (7%)
Query: 15 SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN--NINTLASSGLVVDKIIN 72
++A+ +L++RG + +I +G+AP+ + + FL +I +GL+
Sbjct: 136 GEQALTYLQERGFTDALIKERGIGFAPDSSHFCHD-FLQKKGYDIELAYEAGLL------ 188
Query: 73 KVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKS 132
S E + YDRFR RIMFP+KN G+I+G+ GR E KY+NSPETP+F K
Sbjct: 189 ----SRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYT-GQEPKYLNSPETPIFQKR 243
Query: 133 NELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTN 192
LY L +A+ +I K +++ EG+MDVI G VA +GT + HI I T+
Sbjct: 244 KLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRKLTS 303
Query: 193 SIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFS 249
+I FDGD AG A + + L + +I+ LP DPD YI K+G F+
Sbjct: 304 NITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQ---LPSGMDPDEYIGKYGNDAFT 357
>sp|Q5HFJ8|PRIM_STAAC DNA primase OS=Staphylococcus aureus (strain COL) GN=dnaG PE=3 SV=1
Length = 599
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 125/237 (52%), Gaps = 17/237 (7%)
Query: 15 SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN--NINTLASSGLVVDKIIN 72
++A+ +L++RG + +I +G+AP+ + + FL +I +GL+
Sbjct: 136 GEQALTYLQERGFTDALIKERGIGFAPDSSHFCHD-FLQKKGYDIELAYEAGLL------ 188
Query: 73 KVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKS 132
S E + YDRFR RIMFP+KN G+I+G+ GR E KY+NSPETP+F K
Sbjct: 189 ----SRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYT-GQEPKYLNSPETPIFQKR 243
Query: 133 NELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTN 192
LY L +A+ +I K +++ EG+MDVI G VA +GT + HI I T+
Sbjct: 244 KLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRKLTS 303
Query: 193 SIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFS 249
+I FDGD AG A + + L + +I+ LP DPD YI K+G F+
Sbjct: 304 NITLMFDGDFAGSEATLKTGQNLLQQGLNVFVIQ---LPSGMDPDEYIGKYGNDAFT 357
>sp|Q9X1G3|PRIM_THEMA DNA primase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM
3109 / JCM 10099) GN=dnaG PE=3 SV=1
Length = 565
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 136/258 (52%), Gaps = 20/258 (7%)
Query: 8 YKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLVV 67
Y +L+ SKEA ++LK RG +EE I +F GY P ++I+ + G+ +
Sbjct: 119 YVKELEKSKEAKDYLKSRGFSEEDIAKFGFGYVPKR-----------SSISIEVAEGMNI 167
Query: 68 DKIINKVNQSPVIEKYKRY-DRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPET 126
+ V ++K R+ DRF GRI+ PIKN G I+ FGGR + + E KY+NSPET
Sbjct: 168 -TLEELVRYGIALKKGDRFVDRFEGRIVVPIKNDSGHIVAFGGRALGN-EEPKYLNSPET 225
Query: 127 PLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKK 186
F K L+ EAK ++ G+ +ITEGY D + + G VA+LG + + I K
Sbjct: 226 RYFSKKKTLFLFDEAKKVAKEVGFFVITEGYFDALAFRKDGIPTAVAVLGASLSREAILK 285
Query: 187 ILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKY-DPDSYIRKFGY 245
+ Y+ ++I FD D+AG RA ++LE L Y + + P Y DPD +K G
Sbjct: 286 LSAYSKNVILCFDNDKAGFRATLKSLEDLLDYEFN----VLVATPSPYKDPDELFQKEGE 341
Query: 246 KIFSKKVLEAMSLLQFFL 263
KK+L+ ++FL
Sbjct: 342 GSL-KKMLKNSRSFEYFL 358
>sp|Q6G904|PRIM_STAAS DNA primase OS=Staphylococcus aureus (strain MSSA476) GN=dnaG PE=3
SV=1
Length = 605
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 122/236 (51%), Gaps = 15/236 (6%)
Query: 15 SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTLASSGLVVDKIINK 73
++A+ +L++RG + +I +G+AP+ + + +I +GL+
Sbjct: 136 GEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKRGYDIELAYEAGLL------- 188
Query: 74 VNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSN 133
S E + YDRFR RIMFP+KN G+I+G+ GR E KY+NSPETP+F K
Sbjct: 189 ---SRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYT-GQEPKYLNSPETPIFQKRK 244
Query: 134 ELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNS 193
LY L +A+ +I K +++ EG+MDVI G VA +GT + HI I T +
Sbjct: 245 LLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRKLTLN 304
Query: 194 IIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFS 249
I FDGD AG A + + L + +I+ LP DPD YI K+G F+
Sbjct: 305 ITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQ---LPSGMDPDEYIGKYGNDAFT 357
>sp|Q8NWB7|PRIM_STAAW DNA primase OS=Staphylococcus aureus (strain MW2) GN=dnaG PE=3 SV=1
Length = 605
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 124/237 (52%), Gaps = 17/237 (7%)
Query: 15 SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN--NINTLASSGLVVDKIIN 72
++A+ +L++RG + +I +G+AP+ + + FL +I +GL+
Sbjct: 136 GEQALTYLQERGFTDALIKERGIGFAPDSSHFCHD-FLQKKGYDIELAYEAGLL------ 188
Query: 73 KVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKS 132
S E + YDRFR RIMFP+KN G+I+G+ GR E KY+NSPETP+F K
Sbjct: 189 ----SRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYT-GQEPKYLNSPETPIFQKR 243
Query: 133 NELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTN 192
LY L +A+ +I K +++ EG+MDVI G VA +GT + HI I T
Sbjct: 244 KLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRKLTL 303
Query: 193 SIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFS 249
+I FDGD AG A + + L + +I+ LP DPD YI K+G F+
Sbjct: 304 NITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQ---LPSGMDPDEYIGKYGNDAFT 357
>sp|Q9X4D0|PRIM_GEOSE DNA primase OS=Geobacillus stearothermophilus GN=dnaG PE=1 SV=1
Length = 597
Score = 135 bits (340), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 150/290 (51%), Gaps = 19/290 (6%)
Query: 10 IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTLASSGLVVD 68
+ K + A+++L+ RG +E I RF +GYAP+ +A K+ ++ ++ + +GL+
Sbjct: 134 VHTKEGQAALDYLQARGWTKETIDRFEIGYAPDAPDAAAKLLESHSFSLPVMEKAGLLTK 193
Query: 69 KIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPL 128
K E + RFR RIMFPI + G+ +GF GRL+ + + KY+NSPETP+
Sbjct: 194 K-----------EDGRYVGRFRNRIMFPIHDHRGETVGFSGRLLGEGH-PKYVNSPETPV 241
Query: 129 FHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKIL 188
F K LY A+ I K L+ EG+ DVI +Q G +A +GT+ T +IL
Sbjct: 242 FRKGAILYHFHAARVPIRKRQEALLVEGFADVISAAQAGIDYAIATMGTSLTEEQA-RIL 300
Query: 189 FYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIF 248
++I +DGD+AG AA A E +K LP+ DPD YIR +G + F
Sbjct: 301 RPCDTITICYDGDRAGIEAAWAAAEQLSALGCR---VKVASLPNGLDPDEYIRVYGGERF 357
Query: 249 SKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSL 298
+ + L+ F + + NL+ + E+ +Y E L +I LSS +
Sbjct: 358 AGEAGCRRPLVAFKMAYLRRGKNLQ--HEGERLRYIDEALREIGKLSSPV 405
>sp|Q04505|PRIM_LACLA DNA primase OS=Lactococcus lactis subsp. lactis (strain IL1403)
GN=dnaG PE=3 SV=3
Length = 637
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 131/251 (52%), Gaps = 22/251 (8%)
Query: 4 ASDFYKIQLKNSK---EAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL 60
A+ Y I L +++ A +L++RG+ +++I RFN+G AP E + + K + + +
Sbjct: 119 AARLYNILLMSTELGERARKYLEERGITDDVIKRFNIGLAPEENDFIFKNLSNKFDEEIM 178
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIK--DSNEA 118
A SGL +D F RIMFPI N G IGF GR + D ++A
Sbjct: 179 AKSGLFH------------FSNNNVFDAFTNRIMFPITNEYGHTIGFSGRKWQENDDSKA 226
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KYIN+ T +F KS EL+ L +AK I K V + EG+MDVI + G VA +GTA
Sbjct: 227 KYINTSATTIFDKSYELWNLDKAKPTISKQHEVYLMEGFMDVIAAYKAGINNVVASMGTA 286
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238
T HI+++ + +DGD AG+ A +A+++ + ++ + +P+ DPD
Sbjct: 287 LTEKHIRRLKQMAKKFVLVYDGDSAGQNAIYKAIDLI-----GESAVQIVKVPEGLDPDE 341
Query: 239 YIRKFGYKIFS 249
Y + +G K S
Sbjct: 342 YSKNYGLKGLS 352
>sp|Q9PM37|PRIM_CAMJE DNA primase OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=dnaG PE=3 SV=1
Length = 605
Score = 132 bits (331), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 152/304 (50%), Gaps = 15/304 (4%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLV 66
++K LK+ KE + +L +R LN++ I +F LG+A ++ I L + +
Sbjct: 117 YFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDS----------IRLLQNQKIP 166
Query: 67 VDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPET 126
++ ++ V E + Y F RI FPI + ++GFGGR + + AKY+NSP+
Sbjct: 167 LEDAMS-VGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQN 225
Query: 127 PLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKK 186
LF KS Y AK I K +++ EGYMD I + GF VA+LGTA T H+
Sbjct: 226 ILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGTALTEHHLPL 285
Query: 187 ILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYK 246
I Y +I FD D+AG +AA R+ L +T+ K L DP + K
Sbjct: 286 IRRYDAKVILCFDNDEAGLKAATRS---AFLLSTNKIDGKVAILQGGKDPAELVAKNEST 342
Query: 247 IFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIE-YLFKIIPLSSSLRFKIISS 305
+ E + L +F++ +I +++ + D +K+ I+ + F + PL ++ ++S+
Sbjct: 343 KLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLEPLVANSYTSLVSN 402
Query: 306 LSKI 309
L K+
Sbjct: 403 LLKV 406
>sp|Q9PLC9|PRIM_CHLMU DNA primase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=dnaG
PE=3 SV=1
Length = 600
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 184/382 (48%), Gaps = 43/382 (11%)
Query: 12 LKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLVVDKII 71
L EA+++L KRG + + I RF +GYAP + +VF + + G+ V ++
Sbjct: 131 LPEGGEALSYLYKRGFSLDTIDRFQIGYAPEQ-----RVF-----VRAMEERGISVKQLE 180
Query: 72 NKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA-KYINSPETPLFH 130
S K + F RIMFPI+++ G IGF R K+ + KYINSPET LF
Sbjct: 181 WAGYLS------KDWFLFAQRIMFPIQDSLGYTIGFSSRRFKEGGKGGKYINSPETLLFK 234
Query: 131 KSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKIL-F 189
KS LYGL ++ I K V++ EG D + + FGF T+A GT+ T TH+K+++
Sbjct: 235 KSRVLYGLQFSRKRIAKEKRVILVEGQADCLQMIDFGFNCTLAAQGTSFTETHVKELVKL 294
Query: 190 YTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFS 249
+ FDGD AG +A+ R ++C + + + LP DPDS++ + G +
Sbjct: 295 GVSKAYLLFDGDAAGEKASLRVGDLCQVAGIAVIVCR---LPSGQDPDSFLMQRGPEELR 351
Query: 250 KKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLR-FKIISSLSK 308
+ + L F + I +Y T + EK++ E + ++ S + + + L+
Sbjct: 352 ELLDRGEDYLSFLVWHKIRSYEQFTPR--EKARVVEEVIQQVQHWGSPIMIHEYLRQLAS 409
Query: 309 IIKVSFNEINNLFKINTSSIKHKTIE---KKNIQPICIEYQIMKLLISY----------P 355
++KV + + SSIK T + K + + +C + + ++Y P
Sbjct: 410 LVKVPEAAVLSYL----SSIKSATEDKGKKADAKEVCPDPEATA--VAYKGGKASKKISP 463
Query: 356 SLINEINSEDMIIFSKCSQNYV 377
+I E + ++F+K + +V
Sbjct: 464 RMILEADVIRCLLFAKPEEEFV 485
>sp|P63962|PRIM_MYCTU DNA primase OS=Mycobacterium tuberculosis GN=dnaG PE=3 SV=1
Length = 639
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 141/298 (47%), Gaps = 37/298 (12%)
Query: 10 IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTLASSGLVVD 68
+Q + A +L +R + +F G+AP+ W++L K L ++GL
Sbjct: 132 LQSDEAAPARQYLTERSFDAAAARKFGCGFAPSGWDSLTKHLQRKGFEFEELEAAGLS-- 189
Query: 69 KIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLI--KDSNEAKYINSPET 126
+ P+ DRF R+++PI+ + G+++GFG R + D+ EAKY+N+PET
Sbjct: 190 ---RQGRHGPM-------DRFHRRLLWPIRTSAGEVVGFGARRLFDDDAMEAKYVNTPET 239
Query: 127 PLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH--- 183
L+ KS+ ++G+ AK I K ++ EGY DV+ + G VA GTA H
Sbjct: 240 LLYKKSSVMFGIDLAKRDIAKGHQAVVVEGYTDVMAMHLAGVTTAVASCGTAFGGEHLAM 299
Query: 184 IKKIL----FYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFL---PDKYDP 236
+++++ F+ +I+ FDGD+AGR AA +A + + K+ F+ PD DP
Sbjct: 300 LRRLMMDDSFFRGELIYVFDGDEAGRAAALKAFD------GEQKLAGQSFVAVAPDGMDP 353
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL 294
K G V L +F + I D++ ++ + L + +P+
Sbjct: 354 CDLRLKCGDAALRDLVARRTPLFEFAIRAAIAEM------DLDSAEGRVAALRRCVPM 405
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,102,669
Number of Sequences: 539616
Number of extensions: 6547075
Number of successful extensions: 20344
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 20069
Number of HSP's gapped (non-prelim): 263
length of query: 444
length of database: 191,569,459
effective HSP length: 121
effective length of query: 323
effective length of database: 126,275,923
effective search space: 40787123129
effective search space used: 40787123129
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)