Query psy15222
Match_columns 444
No_of_seqs 340 out of 1831
Neff 6.6
Searched_HMMs 29240
Date Sat Aug 17 00:20:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4edg_A DNA primase; catalytic 100.0 2.1E-76 7.3E-81 593.8 29.0 302 1-322 12-322 (329)
2 1dd9_A DNA primase, DNAG; topr 100.0 5.4E-75 1.8E-79 586.6 32.2 307 1-321 25-336 (338)
3 2au3_A DNA primase; zinc ribbo 100.0 2.5E-65 8.6E-70 529.2 29.3 293 2-321 110-405 (407)
4 1nui_A DNA primase/helicase; z 100.0 4.2E-35 1.4E-39 284.8 11.1 172 17-252 76-254 (255)
5 1q57_A DNA primase/helicase; d 100.0 7.6E-34 2.6E-38 300.3 8.8 178 17-258 13-197 (503)
6 1t6t_1 Putative protein; struc 99.5 8.1E-14 2.8E-18 119.3 9.0 78 138-216 8-87 (118)
7 2fcj_A Small toprim domain pro 98.4 2.1E-06 7.1E-11 73.5 10.5 97 148-256 4-105 (119)
8 1t3w_A DNA primase; DNAG, DNA- 97.4 0.00038 1.3E-08 61.5 8.0 96 340-441 14-111 (148)
9 2r6a_C DNAG primase, helicase 93.8 0.054 1.9E-06 46.1 4.5 74 339-419 5-79 (143)
10 1b79_A DNAB helicase; hexamer, 90.6 0.66 2.3E-05 38.9 7.2 65 339-406 19-84 (119)
11 3gxv_A Replicative DNA helicas 88.0 1.6 5.6E-05 36.7 7.8 63 341-406 11-74 (123)
12 3vdp_A Recombination protein R 87.3 2.4 8.2E-05 39.3 8.9 88 146-236 91-194 (212)
13 1vdd_A Recombination protein R 85.7 1 3.4E-05 42.2 5.5 104 147-257 78-195 (228)
14 2r5u_A Replicative DNA helicas 85.5 1.3 4.5E-05 40.4 6.3 65 339-406 29-94 (200)
15 2q6t_A DNAB replication FORK h 75.3 5.5 0.00019 40.5 7.4 65 339-406 8-74 (444)
16 2r6a_A DNAB helicase, replicat 73.5 6.3 0.00022 40.2 7.3 65 339-406 12-77 (454)
17 3can_A Pyruvate-formate lyase- 57.4 67 0.0023 27.6 9.9 66 164-233 29-105 (182)
18 3bgw_A DNAB-like replicative h 50.5 18 0.00061 36.9 5.5 62 339-405 13-75 (444)
19 3pkr_A FLIG, flagellar motor s 37.4 1.7E+02 0.0057 28.0 9.8 118 232-364 49-180 (279)
20 1xn7_A Hypothetical protein YH 36.4 30 0.001 26.6 3.5 35 282-322 4-38 (78)
21 2ggv_B NS3, non-structural pro 29.8 28 0.00097 31.2 2.6 17 96-112 137-153 (185)
22 3dlo_A Universal stress protei 28.8 1.9E+02 0.0064 23.9 7.8 26 191-216 24-50 (155)
23 3c8f_A Pyruvate formate-lyase 28.4 2E+02 0.007 25.2 8.4 81 149-232 71-172 (245)
24 2k02_A Ferrous iron transport 28.2 36 0.0012 26.8 2.8 21 302-322 18-38 (87)
25 2fp7_B Serine protease NS3; fl 27.8 24 0.00082 31.3 1.8 17 96-112 123-139 (172)
26 3o9x_A Uncharacterized HTH-typ 27.5 81 0.0028 25.7 5.1 45 304-361 88-132 (133)
27 3e90_B NS3 protease; trypsin-l 25.3 30 0.001 31.3 2.0 17 96-112 142-158 (198)
28 1wi3_A DNA-binding protein SAT 24.4 1.8E+02 0.0061 22.1 5.8 41 279-324 19-59 (71)
29 3hug_A RNA polymerase sigma fa 24.3 2.3E+02 0.0077 21.4 6.9 20 303-322 56-75 (92)
30 2fom_B Polyprotein; flavivirus 24.1 26 0.0009 31.4 1.4 17 96-112 138-154 (185)
31 3u1j_B Serine protease NS3; se 24.0 32 0.0011 31.0 1.9 17 96-112 147-163 (191)
32 3idf_A USP-like protein; unive 23.0 2.4E+02 0.0083 22.2 7.2 34 192-228 2-36 (138)
33 3lkw_A Fusion protein of nonst 22.3 34 0.0012 31.8 1.8 17 96-112 188-204 (236)
34 1xl3_C Protein type A, secreti 21.4 3.1E+02 0.011 21.8 7.0 47 262-308 25-75 (92)
35 1p0z_A Sensor kinase CITA; tra 21.0 63 0.0022 26.4 3.1 18 92-109 103-120 (131)
36 4dn7_A ABC transporter, ATP-bi 20.3 54 0.0019 33.4 3.0 26 15-40 377-403 (429)
37 3lfj_A Manxb, phosphotransfera 20.2 2E+02 0.0069 25.7 6.5 94 134-244 79-183 (187)
No 1
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=100.00 E-value=2.1e-76 Score=593.83 Aligned_cols=302 Identities=30% Similarity=0.510 Sum_probs=281.6
Q ss_pred CHHHHHHHHHHhcC---CHHHHHHHHHcCCCHHHHHHccceeecCCchHHHHHhc--cCCchhHHHHcCCceeccccccC
Q psy15222 1 MICASDFYKIQLKN---SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFL--DYNNINTLASSGLVVDKIINKVN 75 (444)
Q Consensus 1 ~~~a~~~y~~~L~~---~~~a~~YL~~RGis~e~i~~f~lGyap~~~~~L~~~l~--~~~~~~~l~~~GL~~~~~~~~~~ 75 (444)
|+.|++|||++|.+ +..|++||++||||+++|++|+|||+|++|+.|.++|. +|+. +.|.++||+..+++
T Consensus 12 ~~~a~~~y~~~L~~~~~g~~a~~YL~~Rgl~~e~i~~f~lGyap~~~~~l~~~l~~~g~~~-~~l~~~GL~~~~~~---- 86 (329)
T 4edg_A 12 HELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDI-ELAYEAGLLSRNEE---- 86 (329)
T ss_dssp HHHHHHHHHHHHHHSSTTHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHHHTTCCH-HHHHHTTSEEEETT----
T ss_pred HHHHHHHHHHHHccCcccHHHHHHHHHcCCCHHHHHhCCeeeccCcHHHHHHHHHHCCCCH-HHHHHCCCeEECCC----
Confidence 57899999999964 35799999999999999999999999999999999987 4777 99999999997765
Q ss_pred CCcccccccccccCCceEEEEEecCCCCEEEEEeeecCCCCCcccccCCCCCccccCCcccCcHHHHHHhhccCcEEEec
Q psy15222 76 QSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITE 155 (444)
Q Consensus 76 ~g~~~~~~~~yd~F~~RiifPI~d~~G~vvgf~gR~l~~~~~pKYlNspet~~F~K~~~Lygl~~a~~~i~~~~~viIvE 155 (444)
| .++||+|++||||||+|.+|+||||+||.+ +++.|||+|||||++|+|++.|||+|.|+++|++.+.+||||
T Consensus 87 -g-----~~~yd~Fr~Ri~fPI~d~~G~vigF~gR~l-~~~~pKYlNspet~~f~K~~~Lygl~~a~~~i~~~~~vivvE 159 (329)
T 4edg_A 87 -N-----FSYYDRFRNRIMFPLKNAQGRIVGYSGRTY-TGQEPKYLNSPETPIFQKRKLLYNLDKARKSIRKLDEIVLLE 159 (329)
T ss_dssp -T-----TEEEESCCSEEEEEEECTTSCEEEEEEECS-SSCSSSEEECCCCSSCCTTTCCBTHHHHHHHHHHHTCEEEES
T ss_pred -C-----CccccccCCEEEEEEECCCCCEEEEEeEEC-CCCCCeEeCCCCcccccccchhccHHHHHHHhccCCcEEEEe
Confidence 3 158999999999999999999999999999 556899999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHcCCCeEEEcCCccCCHHHHHHHhccCCeEEEEeCCChhHHHHHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q psy15222 156 GYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYD 235 (444)
Q Consensus 156 G~~Dvlsl~q~Gi~naVA~lGtalt~~q~~~L~r~~~~Vil~~D~D~AG~~aa~r~~~~l~~~~~~g~~v~v~~lP~gkD 235 (444)
||||||+++|+|++||||++||++|++|+++|++++++||+|||||.||++|++|+++.+.+ .|+.++++.+|+|||
T Consensus 160 G~~Dvial~q~Gi~naVA~lGTalt~~~~~~L~r~~~~Vil~~D~D~AG~~Aa~r~~~~l~~---~g~~v~v~~lP~gkD 236 (329)
T 4edg_A 160 GFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQHLLQ---QGLNVFVIQLPSGMD 236 (329)
T ss_dssp CHHHHHHHHHHTCCSEEECSSSCCCHHHHHHHHHHCSEEEECCCSSHHHHHHHHHHHHHHHH---TTCEEEECCCCTTCC
T ss_pred cHHHHHHHHHcCCCeEEECCccCCCHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHHh---cCCeEEEEECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998764 689999999999999
Q ss_pred cchhhhhhcHHHHHHHH-HhcCCHHHHHHHHHHhh---CCCCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Q psy15222 236 PDSYIRKFGYKIFSKKV-LEAMSLLQFFLEEIILN---YNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIISSLSKIIK 311 (444)
Q Consensus 236 pdd~l~~~G~~~~~~~l-~~a~~~~~f~~~~~~~~---~~~~~~~~k~~~~~~~~~~l~~i~~~~~~r~~~~~~la~~~g 311 (444)
||||++++|.++|.++| +++.|+++|+++.+.++ +|++++ ++++++.+.|+.+++ +++|+.|++++|+.+|
T Consensus 237 pdd~l~~~G~~~~~~~i~~~~~~~~~f~~~~~~~~~~~~~l~~~----~~~~~~~~~i~~i~~-~~~r~~y~~~la~~~~ 311 (329)
T 4edg_A 237 PDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEIAHNDLSYE----RYLKELSHDISLMKS-SILQQKAINDVAPFFN 311 (329)
T ss_dssp HHHHHHHHCHHHHHHHHHHCCEEHHHHHHHHTHHHHHHCHHHHH----HHHHHHHHHHHHCCC-HHHHHHHHHHHGGGGT
T ss_pred HHHHHHHhCHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCcHH----HHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHC
Confidence 99999999999999985 78999999999999888 776655 899999999999999 9999999999999999
Q ss_pred CCHHHHHHHHh
Q psy15222 312 VSFNEINNLFK 322 (444)
Q Consensus 312 i~~~~i~~~~~ 322 (444)
++++.|.+.+.
T Consensus 312 i~~~~l~~~~~ 322 (329)
T 4edg_A 312 VSPEQLANEIQ 322 (329)
T ss_dssp CCHHHHHHHC-
T ss_pred cCHHHHHHHHH
Confidence 99999988764
No 2
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=100.00 E-value=5.4e-75 Score=586.57 Aligned_cols=307 Identities=38% Similarity=0.694 Sum_probs=286.3
Q ss_pred CHHHHHHHHHHhc--CCHHHHHHHHHcCCCHHHHHHccceeecCCchHHHHHhcc--CCchhHHHHcCCceeccccccCC
Q psy15222 1 MICASDFYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLD--YNNINTLASSGLVVDKIINKVNQ 76 (444)
Q Consensus 1 ~~~a~~~y~~~L~--~~~~a~~YL~~RGis~e~i~~f~lGyap~~~~~L~~~l~~--~~~~~~l~~~GL~~~~~~~~~~~ 76 (444)
|+.|++||+++|. .++.|++||++||||++||++|+|||+|.+|+.|.+++.+ ++. +.|.++||+..+++
T Consensus 25 ~~~a~~~y~~~L~~~~~~~a~~YL~~RGls~e~i~~f~lGyap~~~~~L~~~l~~~g~~~-~~l~~~GL~~~~~~----- 98 (338)
T 1dd9_A 25 MDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENR-QSLIDAGMLVTNDQ----- 98 (338)
T ss_dssp HHHHHHHHHHHHTSGGGHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHCSSHHHH-HHHHHTTSEEEC-------
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHcCCCHHHHHHcceeeccccHHHHHHHHHHcCCCH-HHHHHCCCeeecCC-----
Confidence 4789999999998 4678999999999999999999999999999999999975 555 89999999997765
Q ss_pred CcccccccccccCCceEEEEEecCCCCEEEEEeeecCCCCCcccccCCCCCccccCCcccCcHHHHHHhhccCcEEEecC
Q psy15222 77 SPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEG 156 (444)
Q Consensus 77 g~~~~~~~~yd~F~~RiifPI~d~~G~vvgf~gR~l~~~~~pKYlNspet~~F~K~~~Lygl~~a~~~i~~~~~viIvEG 156 (444)
| ++||+|++||||||+|.+|+||||+||.+ +++.|||+|||||++|+|++.|||++.|++++++.++||||||
T Consensus 99 g------~~yd~Fr~Ri~fPI~d~~G~vigf~gR~l-~~~~pKYlnspet~if~K~~~Lygl~~A~~~i~~~~~viIvEG 171 (338)
T 1dd9_A 99 G------RSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEG 171 (338)
T ss_dssp -------CEEESCCSEEEEEEECTTSCEEEEEEEES-SSCSCSEEECCCCSSCCTTTCCBTHHHHHHTCSSCSCEEEESS
T ss_pred C------ccccccCCEEEEEEECCCCcEEEEEEEeC-CCCCCceecCCCCcccccCccccCccHHHHhhccCCeEEEEec
Confidence 5 68999999999999999999999999999 4568999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHcCCCeEEEcCCccCCHHHHHHHhccCCeEEEEeCCChhHHHHHHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q psy15222 157 YMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDP 236 (444)
Q Consensus 157 ~~Dvlsl~q~Gi~naVA~lGtalt~~q~~~L~r~~~~Vil~~D~D~AG~~aa~r~~~~l~~~~~~g~~v~v~~lP~gkDp 236 (444)
|||||+++|+|++||||++||++|++|+++|++++++||+|||||.||++|++|+++.++|++..|+.++++.+|+||||
T Consensus 172 ~~Dvlsl~q~G~~~aVA~lGtalt~~~~~~L~r~~~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~lP~gkDp 251 (338)
T 1dd9_A 172 YMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 251 (338)
T ss_dssp HHHHHHHHHTTCCCEEECCC-CCCHHHHHHHHHHCSEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEEECTTCCH
T ss_pred hHhHHHHHHcCCCcEEEeCccccCHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999987776678999999999999999
Q ss_pred chhhhhhcHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC-CHH
Q psy15222 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIISSLSKIIKV-SFN 315 (444)
Q Consensus 237 dd~l~~~G~~~~~~~l~~a~~~~~f~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~i~~~~~~r~~~~~~la~~~gi-~~~ 315 (444)
|||++++|.++|.++|++|.|+++|+++.+.+++|++++++|.++++++.++|+.+++ +++|+.|+++||+.+|+ +++
T Consensus 252 dd~l~~~G~~~~~~~l~~a~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~i~~-~~~r~~y~~~la~~~~~~~~~ 330 (338)
T 1dd9_A 252 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPG-ETLRIYLRQELGNKLGILDDS 330 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEHHHHHHHHHGGGCCTTSHHHHHHHHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTCSCGG
T ss_pred HHHHHHhcHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999999999 988
Q ss_pred HHHHHH
Q psy15222 316 EINNLF 321 (444)
Q Consensus 316 ~i~~~~ 321 (444)
.+++++
T Consensus 331 ~l~~~~ 336 (338)
T 1dd9_A 331 QLERLM 336 (338)
T ss_dssp GGC---
T ss_pred HHHHHh
Confidence 877654
No 3
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=100.00 E-value=2.5e-65 Score=529.16 Aligned_cols=293 Identities=31% Similarity=0.576 Sum_probs=273.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCCHHHHHHccceeecCCchHHHHHhcc--CCchhHHHHcCCceeccccccCCCcc
Q psy15222 2 ICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLD--YNNINTLASSGLVVDKIINKVNQSPV 79 (444)
Q Consensus 2 ~~a~~~y~~~L~~~~~a~~YL~~RGis~e~i~~f~lGyap~~~~~L~~~l~~--~~~~~~l~~~GL~~~~~~~~~~~g~~ 79 (444)
+.|++||+++|..++.|++||.+||||++++++|+|||+|. |+.|.+++.+ |+. +.+.++||+..++ |
T Consensus 110 ~~a~~~~~~~L~~~~~a~~YL~~RGi~~~~i~~f~lGyap~-~~~l~~~l~~~~~~~-~~l~~~Gl~~~~~------g-- 179 (407)
T 2au3_A 110 DRVCDFYRESLLKNREASEYVKSRGIDPKVARKFDLGYAPS-SEALVKVLKENDLLE-AYLETKNLLSPTK------G-- 179 (407)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHTTCEECCC-HHHHHHHHHHHTCHH-HHHTTTCEECSST------T--
T ss_pred HHHHHHHHHHHhcChHHHHHHHHcCCCHHHHHHhCCCCCCc-hHHHHHHHHhcCCCH-HHHHHCCceEecC------C--
Confidence 56889999999878899999999999999999999999999 9999999864 666 8899999998654 2
Q ss_pred cccccccccCCceEEEEEecCCCCEEEEEee-ecCCCCCcccccCCCCCccccCCcccCcHHHHHHhhccCcEEEecChh
Q psy15222 80 IEKYKRYDRFRGRIMFPIKNTDGQIIGFGGR-LIKDSNEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYM 158 (444)
Q Consensus 80 ~~~~~~yd~F~~RiifPI~d~~G~vvgf~gR-~l~~~~~pKYlNspet~~F~K~~~Lygl~~a~~~i~~~~~viIvEG~~ 158 (444)
++||+|++||||||+|.+|+||||+|| .+ +++.|||+|||||++|+|++.|||++.|++++++.++++||||||
T Consensus 180 ----~~~d~f~~ri~fPi~d~~G~vigf~gRr~l-~~~~pKylnspet~~f~k~~~lygl~~a~~~i~~~~~viivEG~~ 254 (407)
T 2au3_A 180 ----VYRDLFLRRVVIPIKDPRGRVIGFGGRRIV-EDKSPKYINSPDSRVFKKGENLFGLYEAKEYIKEEGFAILVEGYF 254 (407)
T ss_dssp ----CCEETTTTEEEEEEECTTSCEEEEEEEECS-CCSSCSEEECCCCSSCCGGGCEETHHHHHHHHHHHTCEEECSSHH
T ss_pred ----CcccccCCeEEEEEECCCCCEEEEEEEEec-CCCCCeeecCCCCCCCCCCccccChHHHHHHhccCCeEEEEechH
Confidence 479999999999999999999999999 88 557899999999999999999999999999998999999999999
Q ss_pred hHHHHHHcCCCeEEEcCCccCCHHHHHHHhccCCeEEEEeCCChhHHHHHHHHHHHHHhhcCCCcEEEEEeCCCCCCcch
Q psy15222 159 DVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDS 238 (444)
Q Consensus 159 Dvlsl~q~Gi~naVA~lGtalt~~q~~~L~r~~~~Vil~~D~D~AG~~aa~r~~~~l~~~~~~g~~v~v~~lP~gkDpdd 238 (444)
||||++|+|++|+||++||++|++|++.|++++++|++|||||.||++||+|+++.+.. .|+.++++.+|+||||||
T Consensus 255 Dvlsl~q~G~~n~VA~lGtalt~~~~~~L~r~~~~vil~~D~D~AG~~Aa~r~~~~l~~---~g~~~~v~~lP~gkDpdd 331 (407)
T 2au3_A 255 DLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPLLLS---AGVEVYPVYLPEGYDPDE 331 (407)
T ss_dssp HHHHHHHTTCCSEEEESSSSCCHHHHHHHHTTCSEEEEECCSSHHHHHHHHHHHHHHHH---TTCEEEEECCCTTCCHHH
T ss_pred hHHHHHHCCCCcEEEcCcccCCHHHHHHHHhcCCeEEEEEcCCHHHHHHHHHHHHHHHh---CCCeEEEEECCCCCChHH
Confidence 99999999999999999999999999999999899999999999999999999998753 699999999999999999
Q ss_pred hhhhhcHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCHHHHH
Q psy15222 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIISSLSKIIKVSFNEIN 318 (444)
Q Consensus 239 ~l~~~G~~~~~~~l~~a~~~~~f~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~i~~~~~~r~~~~~~la~~~gi~~~~i~ 318 (444)
|++++|.++|.++|++|.|+++|+++.+.+++ .. +++++.++|+.+++ +++|+.|++++|+.+|++++.|.
T Consensus 332 ~l~~~g~~~~~~~l~~a~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~ 402 (407)
T 2au3_A 332 FIKEFGKEELRRLINSSGELFETLIKTARENL-----EE---KTREFRYYLGFISD-GVRRFALASEFHTKYKVPMEILL 402 (407)
T ss_dssp HHHHHCHHHHHHHHHHCCCHHHHHHHHGGGCH-----HH---HHHHHHHHHTTCCC-HHHHHHHHHHHHHHHCCCHHHHT
T ss_pred HHHhcCHHHHHHHHHcCCCHHHHHHHHHHHHH-----HH---HHHHHHHHHHhCCC-HHHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999998776 11 99999999999999 99999999999999999999887
Q ss_pred HHH
Q psy15222 319 NLF 321 (444)
Q Consensus 319 ~~~ 321 (444)
+.+
T Consensus 403 ~~~ 405 (407)
T 2au3_A 403 MKI 405 (407)
T ss_dssp TCC
T ss_pred HHH
Confidence 543
No 4
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=100.00 E-value=4.2e-35 Score=284.78 Aligned_cols=172 Identities=22% Similarity=0.269 Sum_probs=147.4
Q ss_pred HHHHHHHHcCCCHHHHHHccceeecCCchHHHHHhccCCchhHHHHcCCceeccccccCCCcccccccccccCCceEEEE
Q psy15222 17 EAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFP 96 (444)
Q Consensus 17 ~a~~YL~~RGis~e~i~~f~lGyap~~~~~L~~~l~~~~~~~~l~~~GL~~~~~~~~~~~g~~~~~~~~yd~F~~RiifP 96 (444)
.+++||.+|||+++++++|++||+.. . | ..| ||||
T Consensus 76 ~~~~YL~~RGi~~~~i~~f~~~~~~~----------------------------~-----g------~~~------i~fp 110 (255)
T 1nui_A 76 GRYSALTARGISKETCQKAGYWIAKV----------------------------D-----G------VMY------QVAD 110 (255)
T ss_dssp CBCCCBGGGTBCHHHHHHHTEEEEEE----------------------------T-----T------EEE------EEEE
T ss_pred HHHHHHHHcCCCHHHHHHhCeEEEcc----------------------------C-----C------cEE------EEEE
Confidence 47899999999999999999998521 1 3 223 9999
Q ss_pred EecCCCCEEEEEeeecCCCCCcccccCCCCCccccCCcccCcHHHHHHhhccCcEEEecChhhHHHHHHc-CCCeEEEcC
Q psy15222 97 IKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQF-GFLQTVAIL 175 (444)
Q Consensus 97 I~d~~G~vvgf~gR~l~~~~~pKYlNspet~~F~K~~~Lygl~~a~~~i~~~~~viIvEG~~Dvlsl~q~-Gi~naVA~l 175 (444)
|+|.+|+||||++|.+ +..|||+||| |+..|||++.++ +.++|+||||+|||||++|+ |+.++|+++
T Consensus 111 ~~d~~G~vvg~~~R~~--~~~~Ky~~s~------k~~~lyg~~~~~----~~~~v~i~EG~~Dals~~~~~g~~~~v~sl 178 (255)
T 1nui_A 111 YRDQNGNIVSQKVRDK--DKNFKTTGSH------KSDALFGKHLWN----GGKKIVVTEGEIDMLTVMELQDCKYPVVSL 178 (255)
T ss_dssp EECTTSCEEEEEEECT--TCCCEEEECC------CTTCCTTGGGCC----CBSCCEEESSHHHHHHHHHHHTTCSCEECC
T ss_pred EECCCCCEEEEEEECC--CCCceEecCC------CCccccCccccC----CCCEEEEEeCHHHHHHHHHhhCCCcEEEEC
Confidence 9999999999999996 4579999988 678899999874 57889999999999999999 887889999
Q ss_pred CccCCHH------HHHHHhccCCeEEEEeCCChhHHHHHHHHHHHHHhhcCCCcEEEEEeCCCCCCcchhhhhhcHHHHH
Q psy15222 176 GTACTST------HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFS 249 (444)
Q Consensus 176 Gtalt~~------q~~~L~r~~~~Vil~~D~D~AG~~aa~r~~~~l~~~~~~g~~v~v~~lP~gkDpdd~l~~~G~~~~~ 249 (444)
||++|.. ++..|.++ ++||+|+|||.||++|+.++++.+ ..| .|+++.+| +|||||+++++|.++|+
T Consensus 179 g~~~~~~~~~l~~~~~~l~~~-~~iil~~D~D~aG~~aa~~~~~~l----~~~-~v~~~~~p-~kD~nd~l~~~g~~~~~ 251 (255)
T 1nui_A 179 GHGASAAKKTCAANYEYFDQF-EQIILMFDMDEAGRKAVEEAAQVL----PAG-KVRVAVLP-CKDANECHLNGHDREIM 251 (255)
T ss_dssp TTTTTTHHHHHHHTHHHHTTB-SCEEEECCSSHHHHHHHHHHHHHS----CTT-TEEECCCS-SSSHHHHHTTTTHHHHH
T ss_pred CCccchhHHHHHHHHHHhcCC-CEEEEEeCCCHHHHHHHHHHHHhc----cCC-CEEEEeCC-CCCHHHHHHhcCHHHHH
Confidence 9998864 45555554 899999999999999999988764 236 78888888 99999999999999998
Q ss_pred HHH
Q psy15222 250 KKV 252 (444)
Q Consensus 250 ~~l 252 (444)
++|
T Consensus 252 ~~i 254 (255)
T 1nui_A 252 EQV 254 (255)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 5
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=100.00 E-value=7.6e-34 Score=300.33 Aligned_cols=178 Identities=21% Similarity=0.230 Sum_probs=154.1
Q ss_pred HHHHHHHHcCCCHHHHHHccceeecCCchHHHHHhccCCchhHHHHcCCceeccccccCCCcccccccccccCCceEEEE
Q psy15222 17 EAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFP 96 (444)
Q Consensus 17 ~a~~YL~~RGis~e~i~~f~lGyap~~~~~L~~~l~~~~~~~~l~~~GL~~~~~~~~~~~g~~~~~~~~yd~F~~RiifP 96 (444)
.+++||++|||+++++++|++||+|.. | +.+||||
T Consensus 13 ~~~~YL~~Rgi~~~~~~~~~~~~~~~~---------------------------------g------------~~~i~fp 47 (503)
T 1q57_A 13 GRYSALTARGISKETCQKAGYWIAKVD---------------------------------G------------VMYQVAD 47 (503)
T ss_dssp CBCCCBTTTTBCHHHHHHHTEEECCBT---------------------------------T------------BCEEEEE
T ss_pred HHHHHHHHCCCCHHHHHHcCeEEECCC---------------------------------C------------cEEEEEE
Confidence 578999999999999999999998741 3 1369999
Q ss_pred EecCCCCEEEEEeeecCCCCCcccccCCCCCccccCCcccCcHHHHHHhhccCcEEEecChhhHHHHHHc-CCCeEEEcC
Q psy15222 97 IKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQF-GFLQTVAIL 175 (444)
Q Consensus 97 I~d~~G~vvgf~gR~l~~~~~pKYlNspet~~F~K~~~Lygl~~a~~~i~~~~~viIvEG~~Dvlsl~q~-Gi~naVA~l 175 (444)
|+|.+|++|||++|.. +..|||+|+| |+..|||++.++ +.++++||||+|||||++|+ |+.++|+++
T Consensus 48 ~~d~~G~~~g~~~R~~--~~~~ky~~~~------k~~~lyg~~~~~----~~~~v~i~EG~~D~ls~~~~~g~~~~v~sl 115 (503)
T 1q57_A 48 YRDQNGNIVSQKVRDK--DKNFKTTGSH------KSDALFGKHLWN----GGKKIVVTEGEIDMLTVMELQDCKYPVVSL 115 (503)
T ss_dssp EECTTSCEEEEEEEET--TTEEEEEECC------CTTCEETGGGCS----SEEEEEEESSHHHHHHHTTTTTTCSCEEEE
T ss_pred EECCCCCEEEEEeECC--CCCceEecCC------CCCceECccccC----CCCEEEEECCHHHHHHHHHhcCCCcEEEEC
Confidence 9999999999999994 4579999998 578999999875 57889999999999999999 998899999
Q ss_pred CccCCHH------HHHHHhccCCeEEEEeCCChhHHHHHHHHHHHHHhhcCCCcEEEEEeCCCCCCcchhhhhhcHHHHH
Q psy15222 176 GTACTST------HIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFS 249 (444)
Q Consensus 176 Gtalt~~------q~~~L~r~~~~Vil~~D~D~AG~~aa~r~~~~l~~~~~~g~~v~v~~lP~gkDpdd~l~~~G~~~~~ 249 (444)
||++|.. ++..|.+ .++|++|||+|.||++|+.++.+.+. .+ .|+++.+| +|||||+++++|.++|.
T Consensus 116 g~~~~~~~~~l~~~l~~l~~-~~~ivl~~D~D~aG~~aa~~~~~~l~----~~-~~~~~~~p-~kD~nd~l~~~g~~~~~ 188 (503)
T 1q57_A 116 GHGASAAKKTCAANYEYFDQ-FEQIILMFDMDEAGRKAVEEAAQVLP----AG-KVRVAVLP-CKDANECHLNGHDREIM 188 (503)
T ss_dssp SSTTTTHHHHHHTTHHHHHT-EEEEEEECCSSHHHHHHHHHHHHHSC----GG-GEEECCCS-SSSHHHHHTTSCHHHHH
T ss_pred CcccchhHHHHHHHHHhhcC-CCEEEEEeCCCHHHHHHHHHHHHhcc----cC-cEEEEeCC-CCCHHHHHHhcCHHHHH
Confidence 9998875 2344444 47999999999999999999888653 23 78888888 99999999999999999
Q ss_pred HHHHhcCCH
Q psy15222 250 KKVLEAMSL 258 (444)
Q Consensus 250 ~~l~~a~~~ 258 (444)
+++++|.|+
T Consensus 189 ~~i~~a~~~ 197 (503)
T 1q57_A 189 EQVWNAGPW 197 (503)
T ss_dssp HHHTTCCCC
T ss_pred HHHHhcCCC
Confidence 999998865
No 6
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=99.48 E-value=8.1e-14 Score=119.33 Aligned_cols=78 Identities=23% Similarity=0.296 Sum_probs=68.8
Q ss_pred cHHHHHHhhcc--CcEEEecChhhHHHHHHcCCCeEEEcCCccCCHHHHHHHhccCCeEEEEeCCChhHHHHHHHHHHHH
Q psy15222 138 LFEAKNAIEKS--GYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNSIIFSFDGDQAGRRAARRALEVC 215 (444)
Q Consensus 138 l~~a~~~i~~~--~~viIvEG~~Dvlsl~q~Gi~naVA~lGtalt~~q~~~L~r~~~~Vil~~D~D~AG~~aa~r~~~~l 215 (444)
+.+.++.+++. +.+|||||++|+++++++|+.|+|++.||++ +++++.|.+....|++|+|+|.||++++.++.+.+
T Consensus 8 l~e~~~~l~~~s~~~vIvVEGk~D~~~L~~~g~~~iI~t~Gtal-~~~i~~l~~~~~~VIIltD~D~aGe~ir~~i~~~l 86 (118)
T 1t6t_1 8 LSEWIKELKKASREAVILVEGKNDKKALSKFSIKNVIDLSGKRY-ADVVDMLEGKWEKVILLFDLDTHGERINQKMKELL 86 (118)
T ss_dssp HHHHHHHHHHHTTTSEEEESSHHHHHHHHTTTCCCEEECTTSCH-HHHHHHHTTTCSEEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEEEChHHHHHHHHhCcCcEEEECCCcH-HHHHHHHHhCCCEEEEEECCChhHHHHHHHHHHhc
Confidence 55567777776 8899999999999999999999999999999 56999888776669999999999999999988865
Q ss_pred H
Q psy15222 216 L 216 (444)
Q Consensus 216 ~ 216 (444)
.
T Consensus 87 ~ 87 (118)
T 1t6t_1 87 S 87 (118)
T ss_dssp H
T ss_pred C
Confidence 3
No 7
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=98.38 E-value=2.1e-06 Score=73.51 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=70.4
Q ss_pred cCcEEEecChhhHHHHHHcC--CCeEEEcCCccCCHHHHHHHhcc--CCeEEEEeCCChhHHHHHHHHHHHHHhhcCCCc
Q psy15222 148 SGYVLITEGYMDVIGLSQFG--FLQTVAILGTACTSTHIKKILFY--TNSIIFSFDGDQAGRRAARRALEVCLLYATDDK 223 (444)
Q Consensus 148 ~~~viIvEG~~Dvlsl~q~G--i~naVA~lGtalt~~q~~~L~r~--~~~Vil~~D~D~AG~~aa~r~~~~l~~~~~~g~ 223 (444)
-+.+|||||-.|+.++.++| ..+++++.|+ ++.+.+..+... .+.|+++.|+|.+|.+-..+..+ .+| +.
T Consensus 4 i~~vIVVEGk~D~~~L~~~~~~~~~iI~t~Gs-i~~~~l~~I~~~~~~r~VIi~TD~D~~GekIRk~i~~-~lp----~~ 77 (119)
T 2fcj_A 4 VEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGT-ISDARLEELADELEGYDVYLLADADEAGEKLRRQFRR-MFP----EA 77 (119)
T ss_dssp CCEEEEESSHHHHHHHHHHBSSCCEEEECCSC-CCHHHHHHHHHHTTTSEEEEECCSSHHHHHHHHHHHH-HCT----TS
T ss_pred cCeEEEEechHHHHHHHHhcCCCCCEEEeCCc-cCHHHHHHHHHHhcCCCEEEEECCCccHHHHHHHHHH-HCC----CC
Confidence 46799999999999999997 3479999999 999888777654 46899999999999998766544 344 33
Q ss_pred EEEEEeCCCCC-CcchhhhhhcHHHHHHHHHhcC
Q psy15222 224 IIKFLFLPDKY-DPDSYIRKFGYKIFSKKVLEAM 256 (444)
Q Consensus 224 ~v~v~~lP~gk-Dpdd~l~~~G~~~~~~~l~~a~ 256 (444)
+...+|... +..+. .++.+.+.|.++.
T Consensus 78 --~hafi~r~~~gVE~a----~~~~I~~aL~~~~ 105 (119)
T 2fcj_A 78 --EHLYIDRAYREVAAA----PIWHLAQVLLRAR 105 (119)
T ss_dssp --EEECCCTTTCSTTTS----CHHHHHHHHHHTT
T ss_pred --cEEeccCCccCcccC----CHHHHHHHHHhcc
Confidence 456677542 22221 2455666666653
No 8
>1t3w_A DNA primase; DNAG, DNA-directed RNA polymerase, E. coli, DNA replication, replication; HET: DNA MSE; 2.80A {Escherichia coli} SCOP: a.236.1.1 PDB: 2haj_A*
Probab=97.40 E-value=0.00038 Score=61.54 Aligned_cols=96 Identities=13% Similarity=0.141 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHhcCcchhhhcchhhhhhhhccCccHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhh--hHHHHHHHHHH
Q psy15222 340 PICIEYQIMKLLISYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKI--NKNFESIIVKI 417 (444)
Q Consensus 340 ~~~~E~~ll~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~ 417 (444)
..+..+.+|++|++||+++..++.. ..+.....+...+|..+++.|++ ++..+++.|+++++++ ...+.++...-
T Consensus 14 ~~t~~r~~I~LLLq~P~la~~~~~~--~~l~~~~~~~~~Ll~~L~e~~~~-~p~~~t~~LLE~~r~t~~~~~L~~La~~~ 90 (148)
T 1t3w_A 14 KRTTMRILIGLLVQNPELATLVPPL--ENLDENKLPGLGLFRELVNTCLS-QPGLTTGQLLEHYRGTNNAATLEKLSMWD 90 (148)
T ss_dssp CHHHHHHHHHHHHHCGGGGGGCCCC--TTSCGGGSTTHHHHHHHHHHHHT-STTCCHHHHHHTTCSGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHChHHHhcCCcH--HHHhhCcCchHHHHHHHHHHHHH-CCCCCHHHHHHHHcCCchHHHHHHHHhhc
Confidence 4567899999999999999988632 23444447899999999999998 8999999999999988 44566665543
Q ss_pred hcCCCCCHHHHHHHHHHHHHhhhh
Q psy15222 418 QDNFEYSIEIAKKTLLDAIYKDRK 441 (444)
Q Consensus 418 ~~~~e~~~e~~~~~~~~~~~~~~~ 441 (444)
+.- +.++.+..|.|++.+.+.
T Consensus 91 ~~~---~~~~~~~eF~d~l~~L~~ 111 (148)
T 1t3w_A 91 DIA---DKNIAEQTFTDSLNHMFD 111 (148)
T ss_dssp HHH---HHHHHHHHHHHHHHTTTH
T ss_pred ccC---CcHHHHHHHHHHHHHHHH
Confidence 321 236788999999887554
No 9
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=93.81 E-value=0.054 Score=46.12 Aligned_cols=74 Identities=4% Similarity=-0.004 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHHhcCcchhhhcchhhhhhhhccCcc-HHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhHHHHHHHHHH
Q psy15222 339 QPICIEYQIMKLLISYPSLINEINSEDMIIFSKCSQN-YVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKI 417 (444)
Q Consensus 339 ~~~~~E~~ll~~ll~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 417 (444)
....+|+.+|..|+.+|+.+..+... + .. +|..+ +..++..+.+.+.+ +.++|+..+.+.|.+ .+.+.+.++
T Consensus 5 ~~~~AE~~lL~~ll~~~~~~~~v~~~-l-~~-dF~~~~h~~If~~i~~l~~~-~~~~d~~tl~~~l~~---~~~~~l~~l 77 (143)
T 2r6a_C 5 AFQNAERLLLAHMMRSRDVALVVQER-I-GG-RFNIEEHRALAAYIYAFYEE-GHEADPGALISRIPG---ELQPLASEL 77 (143)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-C-CS-CCSSHHHHHHHHHHHHHHTT-SCCSCHHHHTTTSCS---SSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHh-c-cc-cCCcHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH---HHHHHHHHH
Confidence 44678999999999999999887654 2 11 34444 55566667777776 889999999988854 245556666
Q ss_pred hc
Q psy15222 418 QD 419 (444)
Q Consensus 418 ~~ 419 (444)
..
T Consensus 78 ~~ 79 (143)
T 2r6a_C 78 SL 79 (143)
T ss_dssp TT
T ss_pred HH
Confidence 55
No 10
>1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A {Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A
Probab=90.58 E-value=0.66 Score=38.95 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=47.5
Q ss_pred ChhHHHHHHHHHHhcCcchhhhcchhhhhhhhccC-ccHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q psy15222 339 QPICIEYQIMKLLISYPSLINEINSEDMIIFSKCS-QNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKI 406 (444)
Q Consensus 339 ~~~~~E~~ll~~ll~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ 406 (444)
....+|+.+|..|+.+|+.+..+.+. +. -++|. +.++.+|..+.+.+.+ +..+|+-.+.+.|.+.
T Consensus 19 ~~~eAEqaVLGalL~d~~~~~~v~~~-L~-~edFy~~~H~~If~ai~~L~~~-g~piD~vtv~~~L~~~ 84 (119)
T 1b79_A 19 HSIEAEQSVLGGLMLDNERWDDVAER-VV-ADDFYTRPHRHIFTEMARLQES-GSPIDLITLAESLERQ 84 (119)
T ss_dssp CHHHHHHHHHHHHHHCGGGHHHHHTT-CC-GGGSSSHHHHHHHHHHHHHHHT-TCCCSHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHcChHHHHHHHhh-CC-HHHCCcHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHhcc
Confidence 44678999999999999998876432 10 11233 4466677777777776 8999999999999865
No 11
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Probab=88.04 E-value=1.6 Score=36.72 Aligned_cols=63 Identities=16% Similarity=0.029 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHhcCcchhhhcchhhhhhhhccC-ccHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q psy15222 341 ICIEYQIMKLLISYPSLINEINSEDMIIFSKCS-QNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKI 406 (444)
Q Consensus 341 ~~~E~~ll~~ll~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ 406 (444)
..+|+.+|..|+.+|+.+..+.+. + .-++|. +.++.+|..+.+.+.+ +..+|+-.+.+.|.+.
T Consensus 11 ~eAEqaVLGalLld~~~~~~v~~~-L-~~edFy~~~H~~If~ai~~L~~~-~~piD~vtl~~~L~~~ 74 (123)
T 3gxv_A 11 QNIERIVLSGIVLANHKIEEVHSV-L-EPSDFYYPPNGLFFEIALKLHEE-DCPIDENFIRQKMPKD 74 (123)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHTT-C-CGGGCSSHHHHHHHHHHHHHHHT-TCCCSHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHcCHHHHHHHHhh-C-CHHHCCCHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhC
Confidence 578999999999999998776432 1 111233 4466677777777776 8999999999998765
No 12
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=87.32 E-value=2.4 Score=39.29 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=58.7
Q ss_pred hccCcEEEecChhhHHHHHHcCCCeEE-EcCCccC------CHHH--HHHH-hc----cCCeEEEEeCCChhHHHHHHHH
Q psy15222 146 EKSGYVLITEGYMDVIGLSQFGFLQTV-AILGTAC------TSTH--IKKI-LF----YTNSIIFSFDGDQAGRRAARRA 211 (444)
Q Consensus 146 ~~~~~viIvEG~~Dvlsl~q~Gi~naV-A~lGtal------t~~q--~~~L-~r----~~~~Vil~~D~D~AG~~aa~r~ 211 (444)
|....+-|||..-|++++.+.|.-+.+ -++|..+ .+++ +..| .| ..++||+|++..--|+.-|.-.
T Consensus 91 Rd~~~iCVVE~~~Dv~aiE~t~~y~G~YhVLgG~iSPldGigP~~L~i~~L~~Ri~~~~v~EVIlAtnpTvEGeaTa~Yi 170 (212)
T 3vdp_A 91 RDHSTICVVSHPMDVVAMEKVKEYKGVYHVLHGVISPIEGVGPEDIRIKELLERVRDGSVKEVILATNPDIEGEATAMYI 170 (212)
T ss_dssp SEEEEEEEESSHHHHHHHHTTSCCCEEEEECSSCCBTTTTBCGGGTTHHHHHHHHHHSCCSEEEECCCSSHHHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHhhCccceEEEecCCccCccCCCCccccCHHHHHHHHhcCCCcEEEEECCCCccHHHHHHHH
Confidence 355679999999999999999854443 3555444 3443 2323 22 3689999999999999988887
Q ss_pred HHHHHhhcCCCcEEEEE--eCCCCCCc
Q psy15222 212 LEVCLLYATDDKIIKFL--FLPDKYDP 236 (444)
Q Consensus 212 ~~~l~~~~~~g~~v~v~--~lP~gkDp 236 (444)
.+.+.+ .|++|..+ =+|-|-|.
T Consensus 171 ~~~Lk~---~~vkvTRiA~GiPvGgeL 194 (212)
T 3vdp_A 171 AKLLKP---FGVKVTRIAHGIPVGGDL 194 (212)
T ss_dssp HHHHTT---TTCEEEECCBSBCTTCCG
T ss_pred HHHhhh---cCCCeeeccccCcCCcch
Confidence 776543 25444432 15666444
No 13
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=85.72 E-value=1 Score=42.24 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=64.9
Q ss_pred ccCcEEEecChhhHHHHHHcCCCeEE-EcCCccCC------HHHH--H-HHhc--cCCeEEEEeCCChhHHHHHHHHHHH
Q psy15222 147 KSGYVLITEGYMDVIGLSQFGFLQTV-AILGTACT------STHI--K-KILF--YTNSIIFSFDGDQAGRRAARRALEV 214 (444)
Q Consensus 147 ~~~~viIvEG~~Dvlsl~q~Gi~naV-A~lGtalt------~~q~--~-~L~r--~~~~Vil~~D~D~AG~~aa~r~~~~ 214 (444)
....+-|||-.-|++++.+.|.-+.+ -++|..++ ++++ . ++.| ..++||++++.+--|+.-|.-..+.
T Consensus 78 d~~~iCVVE~~~Dv~aiE~t~~y~G~YhVLgG~lSPldGigP~dL~i~~L~~Rl~~V~EVIlAtnpTvEGEaTA~YI~~~ 157 (228)
T 1vdd_A 78 DQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQRL 157 (228)
T ss_dssp CTTEEEEESSHHHHHHTTTTSSCCSEEEECSSCCBGGGTBCTTTSTTGGGGGGCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCHHHHHHHHHhcccceEEEecCCccCcccCCChhhcCHHHHHHHhCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence 45679999999999999998854333 34554433 3332 2 2233 3679999999999999999887776
Q ss_pred HHhhcCCCcEEEEE--eCCCCCCcchhhhhhcHHHHHHHHHhcCC
Q psy15222 215 CLLYATDDKIIKFL--FLPDKYDPDSYIRKFGYKIFSKKVLEAMS 257 (444)
Q Consensus 215 l~~~~~~g~~v~v~--~lP~gkDpdd~l~~~G~~~~~~~l~~a~~ 257 (444)
+.+ .|++|..+ =+|-|-|.+ |+- ...+.+.+++..+
T Consensus 158 Lk~---~~vkVTRiA~GiPvGgeLE-Y~D---e~TL~~Al~~R~~ 195 (228)
T 1vdd_A 158 LEP---LGAAISRIAYGVPVGGSLE-YTD---EVTLGRALTGRQT 195 (228)
T ss_dssp HTT---SSCEEEECCBCBCTTCCGG-GSC---HHHHHHHHHTCEE
T ss_pred HHH---cCCCEEEecccCCCCccee-ecc---HHHHHHHHHcCcc
Confidence 643 25554433 256664443 222 2234555555433
No 14
>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding, autocatal cleavage, DNA replication, DNA-binding, endonuclease; 1.90A {Mycobacterium tuberculosis}
Probab=85.50 E-value=1.3 Score=40.44 Aligned_cols=65 Identities=9% Similarity=0.077 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHHHhcCcchhhhcchhhhhhhhccC-ccHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q psy15222 339 QPICIEYQIMKLLISYPSLINEINSEDMIIFSKCS-QNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKI 406 (444)
Q Consensus 339 ~~~~~E~~ll~~ll~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ 406 (444)
....+|+.+|..||.+|+.+..+... +. -++|. +.+..+|..+.+.+.+ +..+|+-.+.+.|.+.
T Consensus 29 ~~~eAEqaVLG~lL~d~~~~~~v~~~-L~-~edFy~~~H~~If~ai~~L~~~-g~piD~vtv~~~L~~~ 94 (200)
T 2r5u_A 29 QDLAAEQSVLGGMLLSKDAIADVLER-LR-PGDFYRPAHQNVYDAILDLYGR-GEPADAVTVAAELDRR 94 (200)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHTT-CC-TTCCSSHHHHHHHHHHHHHHHT-TCCCSHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCHhhHHHHhcc-CC-HHHcCCHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhc
Confidence 44679999999999999998776432 10 11233 4466677777777777 8999999999999765
No 15
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=75.28 E-value=5.5 Score=40.51 Aligned_cols=65 Identities=8% Similarity=0.104 Sum_probs=46.9
Q ss_pred ChhHHHHHHHHHHhcCcchhhhcchhhh-hhhhccC-ccHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q psy15222 339 QPICIEYQIMKLLISYPSLINEINSEDM-IIFSKCS-QNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKI 406 (444)
Q Consensus 339 ~~~~~E~~ll~~ll~~p~~~~~~~~~~~-~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ 406 (444)
....+|+.+|..||.+|+.+..+.+. + . -++|. +.+..+|..+.+.+.+ +..+|+..+.+.|.+.
T Consensus 8 ~~~eaE~~vLg~ll~~~~~~~~v~~~-L~~-~edFy~~~h~~If~ai~~l~~~-~~~iD~~tv~~~L~~~ 74 (444)
T 2q6t_A 8 HSLEAEQSVLGSILLDSDVMDEVEGL-LPS-PEAFYAEAHRKIYAAMQALRSQ-GRPVDLVTLSEELSRR 74 (444)
T ss_dssp CCHHHHHHHHHHHHHCGGGHHHHHHH-CCS-GGGCSSHHHHHHHHHHHHHHHT-TCCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcChhHHHHHHHh-cCC-HHHcCcHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhc
Confidence 34578999999999999998776432 1 0 11243 4466677777777776 8899999999988764
No 16
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=73.47 E-value=6.3 Score=40.17 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=46.9
Q ss_pred ChhHHHHHHHHHHhcCcchhhhcchhhhhhhhccC-ccHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q psy15222 339 QPICIEYQIMKLLISYPSLINEINSEDMIIFSKCS-QNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKI 406 (444)
Q Consensus 339 ~~~~~E~~ll~~ll~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ 406 (444)
....+|+.+|..||.+|+.+..+.+. + .-++|. +.+..+|..+.+.+.+ +..+|+..+.+.|.+.
T Consensus 12 ~~~eaE~~vLg~lL~~~~~~~~v~~~-L-~~edFy~~~h~~If~ai~~l~~~-~~~iD~~tv~~~L~~~ 77 (454)
T 2r6a_A 12 QSIEAEQAVLGAVFLDPAALVPASEI-L-IPEDFYRAAHQKIFHAMLRVADR-GEPVDLVTVTAELAAS 77 (454)
T ss_dssp CCHHHHHHHHHHHHHCGGGHHHHHHH-C-CGGGCSSHHHHHHHHHHHHHHHT-TCCCSHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcChHHHHHHHhc-C-CHHHcCCHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhc
Confidence 34678999999999999998876432 1 011233 4466677777777776 8899999998888764
No 17
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=57.40 E-value=67 Score=27.60 Aligned_cols=66 Identities=9% Similarity=0.130 Sum_probs=44.3
Q ss_pred HHcCCCeEEEcCCccCCHHHHHHHhccCCeEEEEeCC-ChhHH--------HHHHHHHHHHHhhcCCCc--EEEEEeCCC
Q psy15222 164 SQFGFLQTVAILGTACTSTHIKKILFYTNSIIFSFDG-DQAGR--------RAARRALEVCLLYATDDK--IIKFLFLPD 232 (444)
Q Consensus 164 ~q~Gi~naVA~lGtalt~~q~~~L~r~~~~Vil~~D~-D~AG~--------~aa~r~~~~l~~~~~~g~--~v~v~~lP~ 232 (444)
.+.|+..++.|.|+ ++++.++.|....+.|.+-+|+ |..-. +.+.+.++.+.. .|. .++++..|.
T Consensus 29 ~~~g~~~~l~TNG~-l~~~~~~~l~~~~d~v~isld~~~~~~~~~~~g~~~~~i~~~i~~l~~---~g~~v~i~~~v~~~ 104 (182)
T 3can_A 29 GQQGIHRAVDTTLL-ARKETVDEVMRNCELLLIDLKSMDSTVHQTFCDVPNELILKNIRRVAE---ADFPYYIRIPLIEG 104 (182)
T ss_dssp HHTTCCEEEECTTC-CCHHHHHHHHHTCSEEEEECCCSCHHHHHHHHSSCSHHHHHHHHHHHH---TTCCEEEEEEECBT
T ss_pred HHCCCcEEEECCCC-CCHHHHHHHHhhCCEEEEECCCCCHHHHHHHhCCCHHHHHHHHHHHHh---CCCeEEEEEEEECC
Confidence 45688888999998 7888888888777889999998 44211 334555555543 354 445555674
Q ss_pred C
Q psy15222 233 K 233 (444)
Q Consensus 233 g 233 (444)
-
T Consensus 105 ~ 105 (182)
T 3can_A 105 V 105 (182)
T ss_dssp T
T ss_pred C
Confidence 3
No 18
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=50.47 E-value=18 Score=36.89 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=43.8
Q ss_pred ChhHHHHHHHHHHhcCcchhhhcchhhhhhhhccC-ccHHHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q psy15222 339 QPICIEYQIMKLLISYPSLINEINSEDMIIFSKCS-QNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKK 405 (444)
Q Consensus 339 ~~~~~E~~ll~~ll~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~ 405 (444)
....+|+.+|..||.+|+.+..+. -. -++|. +.+..+|..+.+.+.+ +..+|+-.+.+.|.+
T Consensus 13 ~~~eaE~~vLg~ll~~~~~~~~v~-l~---~~dF~~~~h~~If~~i~~l~~~-~~~~D~~tv~~~l~~ 75 (444)
T 3bgw_A 13 YNEYAEQAVLGSILTEPELIKECP-LT---PEHFSPGKHFNIYFTMQDLDRK-GQSVDFTSIAARVGE 75 (444)
T ss_dssp -CHHHHHHHHHHHHHSTTHHHHSC-CC---GGGSCTTHHHHHHHHHHHHHHT-TCCCSHHHHHHHSST
T ss_pred CCHHHHHHHHHHHHcCccccceee-cC---HHHcCCHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHH
Confidence 346789999999999999988764 11 11233 4466667777777776 888998888777764
No 19
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=37.35 E-value=1.7e+02 Score=27.95 Aligned_cols=118 Identities=9% Similarity=0.054 Sum_probs=71.7
Q ss_pred CCCC-cchhhhhhcHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy15222 232 DKYD-PDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIISSLSKII 310 (444)
Q Consensus 232 ~gkD-pdd~l~~~G~~~~~~~l~~a~~~~~f~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~i~~~~~~r~~~~~~la~~~ 310 (444)
...+ |-+++++-.++.+..+|.+-.|-+--++ .+.. .|+ ....+|..+|. ..|...+.++|..=
T Consensus 49 ~~~~~~~~~L~~~dp~~La~~l~~EhPQtiAlI---Ls~L---~~~-------~AA~VL~~Lp~--~~r~dV~~Ria~l~ 113 (279)
T 3pkr_A 49 LQTQKNFAYLGKIKPQQLADFIINEHPQTIALI---LAHM---EAP-------NAAETLSYFPD--EMKAEISIRMANLG 113 (279)
T ss_dssp ----CCCGGGGGSCHHHHHHHHTTSCHHHHHHH---HHTS---CHH-------HHHHHHTTSCH--HHHHHHHHHHHTCC
T ss_pred cccCchHHHHhCCCHHHHHHHHHhcCHHHHHHH---HHcC---CHH-------HHHHHHHHCCH--HHHHHHHHHHHccC
Confidence 3456 9999999999999999988777654433 2222 232 33466778874 78888999999999
Q ss_pred CCCHHHHHHH---Hhhcccc-ccccc-c---c----ccCCChhHHHHHHHHHHh-cCcchhhhcchh
Q psy15222 311 KVSFNEINNL---FKINTSS-IKHKT-I---E----KKNIQPICIEYQIMKLLI-SYPSLINEINSE 364 (444)
Q Consensus 311 gi~~~~i~~~---~~~~~~~-~~~~~-~---~----~~~~~~~~~E~~ll~~ll-~~p~~~~~~~~~ 364 (444)
+++++.++.. +...-.. ..... . . --+.-....|..+|..|= .+|++..+|...
T Consensus 114 ~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~ILN~~d~~~e~~iL~~L~~~dpelAe~Ir~~ 180 (279)
T 3pkr_A 114 EISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEM 180 (279)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHHHTSCHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHHcCChHHHHHHHHHHHhhCHHHHHHHHHh
Confidence 9999987653 2211000 00000 0 0 001222345677777665 589999988765
No 20
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=36.42 E-value=30 Score=26.57 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh
Q psy15222 282 KYNIEYLFKIIPLSSSLRFKIISSLSKIIKVSFNEINNLFK 322 (444)
Q Consensus 282 ~~~~~~~l~~i~~~~~~r~~~~~~la~~~gi~~~~i~~~~~ 322 (444)
++++..+|..-.. .-+++||+.|++++.+|++.+.
T Consensus 4 L~~Il~~L~~~g~------vsv~eLa~~l~VS~~TIRrdL~ 38 (78)
T 1xn7_A 4 LIQVRDLLALRGR------MEAAQISQTLNTPQPMINAMLQ 38 (78)
T ss_dssp HHHHHHHHHHSCS------BCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCC------CcHHHHHHHHCcCHHHHHHHHH
Confidence 3455555554333 2367899999999999998765
No 21
>2ggv_B NS3, non-structural protein 3; beta barrel, serine protease, viral protease, flavivirus, hydrolase; 1.80A {West nile virus} PDB: 2ijo_B
Probab=29.82 E-value=28 Score=31.18 Aligned_cols=17 Identities=35% Similarity=0.769 Sum_probs=15.6
Q ss_pred EEecCCCCEEEEEeeec
Q psy15222 96 PIKNTDGQIIGFGGRLI 112 (444)
Q Consensus 96 PI~d~~G~vvgf~gR~l 112 (444)
||.|.+|+|||+.|--+
T Consensus 137 PIin~~G~vvGLYGNGv 153 (185)
T 2ggv_B 137 PIVDKNGDVIGLYGNGV 153 (185)
T ss_dssp EEECTTSCEEEEEEEEE
T ss_pred ceEcCCCcEEEEecceE
Confidence 99999999999999763
No 22
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=28.76 E-value=1.9e+02 Score=23.94 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=21.0
Q ss_pred CCeEEEEeCC-ChhHHHHHHHHHHHHH
Q psy15222 191 TNSIIFSFDG-DQAGRRAARRALEVCL 216 (444)
Q Consensus 191 ~~~Vil~~D~-D~AG~~aa~r~~~~l~ 216 (444)
.++|+++.|+ ......|...+++...
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~ 50 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEAR 50 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHH
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHH
Confidence 5799999999 8888888877777554
No 23
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=28.39 E-value=2e+02 Score=25.16 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=49.5
Q ss_pred CcEEEecCh----hh----HHH-HHHcCCCeEEEcCCccC-CHHHHHHHhccCCeEEEEeCC-ChhHH--------HHHH
Q psy15222 149 GYVLITEGY----MD----VIG-LSQFGFLQTVAILGTAC-TSTHIKKILFYTNSIIFSFDG-DQAGR--------RAAR 209 (444)
Q Consensus 149 ~~viIvEG~----~D----vls-l~q~Gi~naVA~lGtal-t~~q~~~L~r~~~~Vil~~D~-D~AG~--------~aa~ 209 (444)
..|.++=|+ .| .+. +.+.|+...+.+.|+.+ +.+.+..|.+..+.|.+.+|+ |+.-. +.+.
T Consensus 71 ~~i~~~GGEP~l~~~~l~~l~~~~~~~~~~i~i~Tng~~~~~~~~~~~l~~~~~~v~isld~~~~~~~~~~~~~~~~~~~ 150 (245)
T 3c8f_A 71 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTL 150 (245)
T ss_dssp CEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCCCCCHHHHHHHHTCSEEEEECCCSSHHHHHHHHSSCSHHHH
T ss_pred CeEEEECCCcCCCHHHHHHHHHHHHHcCCcEEEEeCCCcCcCHHHHHHHHHhCCEEEEeCCCCCHHHhhhccCCCHHHHH
Confidence 457777663 23 232 34468877788889753 667777776667889999998 54221 2344
Q ss_pred HHHHHHHhhcCCCcE--EEEEeCCC
Q psy15222 210 RALEVCLLYATDDKI--IKFLFLPD 232 (444)
Q Consensus 210 r~~~~l~~~~~~g~~--v~v~~lP~ 232 (444)
++++.+.. .|+. +.++.+|+
T Consensus 151 ~~i~~l~~---~g~~v~i~~~~~~g 172 (245)
T 3c8f_A 151 EFAKYLAN---KNVKVWIRYVVVPG 172 (245)
T ss_dssp HHHHHHHH---HTCCEEEEEEECTT
T ss_pred HHHHHHHh---cCCEEEEEEeecCC
Confidence 55555543 3544 44456674
No 24
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=28.19 E-value=36 Score=26.81 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHh
Q psy15222 302 IISSLSKIIKVSFNEINNLFK 322 (444)
Q Consensus 302 ~~~~la~~~gi~~~~i~~~~~ 322 (444)
-+++||+.|++|+.+|++.+.
T Consensus 18 sv~eLA~~l~VS~~TIRrDL~ 38 (87)
T 2k02_A 18 EAKQLSARLQTPQPLIDAMLE 38 (87)
T ss_dssp EHHHHHHHTTCCHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHH
Confidence 367899999999999998775
No 25
>2fp7_B Serine protease NS3; flavivirus, NS3 protease, NS2B cofactor; HET: OAR; 1.68A {West nile virus} SCOP: b.47.1.3
Probab=27.77 E-value=24 Score=31.34 Aligned_cols=17 Identities=35% Similarity=0.769 Sum_probs=15.4
Q ss_pred EEecCCCCEEEEEeeec
Q psy15222 96 PIKNTDGQIIGFGGRLI 112 (444)
Q Consensus 96 PI~d~~G~vvgf~gR~l 112 (444)
||.|.+|+|||+.|--+
T Consensus 123 PIin~~G~vVGLYGNGv 139 (172)
T 2fp7_B 123 PIVDKNGDVIGLYGNGV 139 (172)
T ss_dssp EEECTTSCEEEESCCEE
T ss_pred ceEccCCcEEEEecceE
Confidence 99999999999999763
No 26
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=27.48 E-value=81 Score=25.73 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=25.8
Q ss_pred HHHHHHhCCCHHHHHHHHhhcccccccccccccCCChhHHHHHHHHHHhcCcchhhhc
Q psy15222 304 SSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINEI 361 (444)
Q Consensus 304 ~~la~~~gi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ll~~ll~~p~~~~~~ 361 (444)
.++|+.+|++..+|.+.-+. ... + ...-..++.++-.+|+++.++
T Consensus 88 ~~la~~~g~s~~~i~~~E~g-----~~~-------p-~~~~~~l~~~~~~~p~~~~~l 132 (133)
T 3o9x_A 88 KEASEIFGGGVNAFSRYEKG-----NAQ-------P-HPSTIKLLRVLDKHPELLNEI 132 (133)
T ss_dssp HHHHHHHCSCTTHHHHHHHT-----SSC-------C-CHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHCCCHHHHHHHHCC-----CCC-------C-CHHHHHHHHHHccCHHHHHHh
Confidence 46677777777666553221 000 1 112256788888899887654
No 27
>3e90_B NS3 protease; trypsin-like serine protease, protease inhibitor, catalytic histidine, induced FIT, ATP-binding, capsid protein, helicase; HET: NKK; 2.45A {West nile virus} SCOP: b.47.1.3
Probab=25.26 E-value=30 Score=31.30 Aligned_cols=17 Identities=35% Similarity=0.769 Sum_probs=15.3
Q ss_pred EEecCCCCEEEEEeeec
Q psy15222 96 PIKNTDGQIIGFGGRLI 112 (444)
Q Consensus 96 PI~d~~G~vvgf~gR~l 112 (444)
||.|.+|+|||+.|--+
T Consensus 142 PIin~~G~VVGLYGNGv 158 (198)
T 3e90_B 142 PIVDKNGDVIGLYGNGV 158 (198)
T ss_dssp EEECTTCCEEEECCCEE
T ss_pred ceecCCCcEEEEecceE
Confidence 99999999999998654
No 28
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=24.42 E-value=1.8e+02 Score=22.06 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhhc
Q psy15222 279 EKSKYNIEYLFKIIPLSSSLRFKIISSLSKIIKVSFNEINNLFKIN 324 (444)
Q Consensus 279 ~~~~~~~~~~l~~i~~~~~~r~~~~~~la~~~gi~~~~i~~~~~~~ 324 (444)
..+++.....+..-|+ ..-...||..+|+++..|.-.|+..
T Consensus 19 L~~Lqs~f~~~~~yPd-----~~~r~~La~~tGL~~~~IqVWFQNr 59 (71)
T 1wi3_A 19 LGILQSFIHDVGLYPD-----QEAIHTLSAQLDLPKHTIIKFFQNQ 59 (71)
T ss_dssp HHHHHHHHHHHCSCCC-----HHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCC-----HHHHHHHHHHhCCCHHHHHHhhccc
Confidence 4555555555555566 3456789999999999999888753
No 29
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=24.28 E-value=2.3e+02 Score=21.40 Aligned_cols=20 Identities=0% Similarity=0.142 Sum_probs=16.7
Q ss_pred HHHHHHHhCCCHHHHHHHHh
Q psy15222 303 ISSLSKIIKVSFNEINNLFK 322 (444)
Q Consensus 303 ~~~la~~~gi~~~~i~~~~~ 322 (444)
.++||+.+|++..+|+..+.
T Consensus 56 ~~eIA~~lgis~~tV~~~l~ 75 (92)
T 3hug_A 56 TAQIATDLGIAEGTVKSRLH 75 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 56999999999999987554
No 30
>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral protein-prote complex; 1.50A {Dengue virus 2} SCOP: b.47.1.3 PDB: 1df9_A 2qid_A 1bef_A
Probab=24.12 E-value=26 Score=31.44 Aligned_cols=17 Identities=29% Similarity=0.729 Sum_probs=15.2
Q ss_pred EEecCCCCEEEEEeeec
Q psy15222 96 PIKNTDGQIIGFGGRLI 112 (444)
Q Consensus 96 PI~d~~G~vvgf~gR~l 112 (444)
||+|.+|+|||+.|--+
T Consensus 138 PIin~~G~vvGLYGNGv 154 (185)
T 2fom_B 138 PIVDKKGKVVGLYGNGV 154 (185)
T ss_dssp EEECTTSCEEEETTCEE
T ss_pred ceEccCCcEEEEecceE
Confidence 99999999999998653
No 31
>3u1j_B Serine protease NS3; serine protease, ER MEM hydrolase-hydrolase inhibitor complex; 1.80A {Dengue virus 3} SCOP: b.47.1.3 PDB: 3u1i_B
Probab=24.01 E-value=32 Score=30.97 Aligned_cols=17 Identities=35% Similarity=0.790 Sum_probs=15.4
Q ss_pred EEecCCCCEEEEEeeec
Q psy15222 96 PIKNTDGQIIGFGGRLI 112 (444)
Q Consensus 96 PI~d~~G~vvgf~gR~l 112 (444)
||.|.+|+|||+.|--+
T Consensus 147 PIin~~G~VVGLYGNG~ 163 (191)
T 3u1j_B 147 PIINREGKVVGLYGNGV 163 (191)
T ss_dssp EEECTTSCEEEECCBEE
T ss_pred ceecCCCcEEEEecCeE
Confidence 99999999999998655
No 32
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=22.98 E-value=2.4e+02 Score=22.15 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=25.1
Q ss_pred CeEEEEeCCChhHHHHHHHHHHHH-HhhcCCCcEEEEE
Q psy15222 192 NSIIFSFDGDQAGRRAARRALEVC-LLYATDDKIIKFL 228 (444)
Q Consensus 192 ~~Vil~~D~D~AG~~aa~r~~~~l-~~~~~~g~~v~v~ 228 (444)
++|+++.|+......|...+++.. . ..+..+.++
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~---~~~a~l~ll 36 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGK---DADCTLTLI 36 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTT---CTTEEEEEE
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhcc---CCCCEEEEE
Confidence 579999999999988888877755 3 235555554
No 33
>3lkw_A Fusion protein of nonstructural protein 2B and nonstructural protein 3; viral protease, serine protease, NS3 protease, NS2B cofactor; 2.00A {Dengue virus 1} PDB: 3l6p_A
Probab=22.33 E-value=34 Score=31.80 Aligned_cols=17 Identities=41% Similarity=0.815 Sum_probs=15.3
Q ss_pred EEecCCCCEEEEEeeec
Q psy15222 96 PIKNTDGQIIGFGGRLI 112 (444)
Q Consensus 96 PI~d~~G~vvgf~gR~l 112 (444)
||.|.+|+|||++|--+
T Consensus 188 PIin~~G~VvGLYGnG~ 204 (236)
T 3lkw_A 188 PIVNREGKIVGLYGNGV 204 (236)
T ss_dssp EEECTTSCEEEESCCEE
T ss_pred ceecCCCcEEEEecceE
Confidence 99999999999998655
No 34
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=21.39 E-value=3.1e+02 Score=21.77 Aligned_cols=47 Identities=15% Similarity=0.274 Sum_probs=36.4
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHH
Q psy15222 262 FLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPL----SSSLRFKIISSLSK 308 (444)
Q Consensus 262 ~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~i~~----~~~~r~~~~~~la~ 308 (444)
-++.+....++.+++.+..+++++...++.+|- ++..|...+.-+.+
T Consensus 25 ~I~~l~~~~~~~d~e~qI~Flqel~~l~R~iP~~vf~d~e~R~~lL~a~Q~ 75 (92)
T 1xl3_C 25 DIEHLANAFSLPTPEIXVRFYQDLXRMFRLFPLGVFSDEEQRQNLLQMCQN 75 (92)
T ss_dssp HHHHHHHTTCCSSHHHHHHHHHHHHHHHHTSCGGGSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHCCHHhcCCHHHHHHHHHHHHH
Confidence 356788889999999999999999999999986 24456655554443
No 35
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=21.00 E-value=63 Score=26.41 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=15.1
Q ss_pred eEEEEEecCCCCEEEEEe
Q psy15222 92 RIMFPIKNTDGQIIGFGG 109 (444)
Q Consensus 92 RiifPI~d~~G~vvgf~g 109 (444)
|...||+|.+|++||.-.
T Consensus 103 ~~~~PV~~~~g~viGvv~ 120 (131)
T 1p0z_A 103 RGKSPIQDATGKVIGIVS 120 (131)
T ss_dssp EEEEEEECTTCCEEEEEE
T ss_pred EEEEeEECCCCCEEEEEE
Confidence 677899998999998754
No 36
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}
Probab=20.29 E-value=54 Score=33.37 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=19.5
Q ss_pred CHHHHHHHHHcCCCHHHHHHcc-ceee
Q psy15222 15 SKEAINFLKKRGLNEEIILRFN-LGYA 40 (444)
Q Consensus 15 ~~~a~~YL~~RGis~e~i~~f~-lGya 40 (444)
+++.+-||.+|||+++.+++.= -||.
T Consensus 377 deeqLFYL~SRGIse~eA~~LIV~GFl 403 (429)
T 4dn7_A 377 AKDQVEYLMARGLTEDEAVGMIIRGFL 403 (429)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3678999999999998776532 2454
No 37
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=20.19 E-value=2e+02 Score=25.74 Aligned_cols=94 Identities=13% Similarity=0.157 Sum_probs=56.4
Q ss_pred cccCcHHHHHHhhc-----cCcEEEecChhhHHHHHHcCCCe-E--EEcCCccCCHHHHHHHhccCCeEEEEeCCChhHH
Q psy15222 134 ELYGLFEAKNAIEK-----SGYVLITEGYMDVIGLSQFGFLQ-T--VAILGTACTSTHIKKILFYTNSIIFSFDGDQAGR 205 (444)
Q Consensus 134 ~Lygl~~a~~~i~~-----~~~viIvEG~~Dvlsl~q~Gi~n-a--VA~lGtalt~~q~~~L~r~~~~Vil~~D~D~AG~ 205 (444)
.++....|.+.+.+ .+..+||+..-|++.+.+.|++- . |+.++.. +.- +..++.|.+ |.++.
T Consensus 79 ~i~sve~ai~~~~~~~~~~~~v~il~k~p~d~~~lve~Gv~i~~vNvG~m~~~--~gk----~~i~~~V~v--~~ed~-- 148 (187)
T 3lfj_A 79 KVFGVDAALKEWSQKTSVEEKVFLLFKNIDTCKRVMDGGLPITTLNIGGVAKT--PQR----KGISQSVSL--SEDEV-- 148 (187)
T ss_dssp EEECHHHHHHHHHSBCSSCEEEEEEESSHHHHHHHHHTTCCCSEEEEEEBCCC--TTS----EECSSSBEE--CHHHH--
T ss_pred EEEEHHHHHHHHhCCccCCceEEEEECCHHHHHHHHHcCCCCCEEEECCCCCC--CCC----EEEeccEee--CHHHH--
Confidence 45677777776654 34689999999999999999651 2 3444432 220 123444433 32222
Q ss_pred HHHHHHHHHHHhhcCC-CcEEEEEeCCCC--CCcchhhhhhc
Q psy15222 206 RAARRALEVCLLYATD-DKIIKFLFLPDK--YDPDSYIRKFG 244 (444)
Q Consensus 206 ~aa~r~~~~l~~~~~~-g~~v~v~~lP~g--kDpdd~l~~~G 244 (444)
.+++.+. .. |+.+.+-.+|+. .|.++++.+.+
T Consensus 149 ----~~lk~L~---~~~Gv~v~~q~vP~d~~~~~~~~lkk~~ 183 (187)
T 3lfj_A 149 ----KTLLELK---TKYNVDVYLQMIPDSEKIHLTTVVEKYF 183 (187)
T ss_dssp ----HHHHHHH---HHHCCEEEECSSTTSCCEEHHHHHHHHS
T ss_pred ----HHHHHHH---hccCCEEEEEECCCCChhcHHHHHHhhh
Confidence 2233332 35 889988888964 46677766543
Done!