Your job contains 1 sequence.
>psy15222
MICASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTL
ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKY
INSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACT
STHIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYI
RKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRF
KIISSLSKIIKVSFNEINNLFKINTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLINE
INSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLKKINKNFESIIVKIQDN
FEYSIEIAKKTLLDAIYKDRKSVV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15222
(444 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|P0ABS5 - symbol:dnaG species:83333 "Escherichia... 496 2.0e-47 1
TIGR_CMR|CBU_1595 - symbol:CBU_1595 "DNA primase" species... 489 1.1e-46 1
TIGR_CMR|SO_1286 - symbol:SO_1286 "DNA primase" species:2... 474 4.4e-45 1
TIGR_CMR|CPS_4335 - symbol:CPS_4335 "DNA primase" species... 458 2.2e-43 1
TIGR_CMR|BA_4516 - symbol:BA_4516 "DNA primase" species:1... 404 1.0e-39 2
TIGR_CMR|CHY_0454 - symbol:CHY_0454 "DNA primase" species... 363 6.2e-33 1
TIGR_CMR|GSU_3090 - symbol:GSU_3090 "DNA primase" species... 342 1.6e-30 1
TIGR_CMR|SPO_1749 - symbol:SPO_1749 "DNA primase" species... 337 8.3e-30 1
TIGR_CMR|ECH_0761 - symbol:ECH_0761 "DNA primase" species... 308 1.9e-29 2
TIGR_CMR|DET_0552 - symbol:DET_0552 "DNA primase" species... 328 5.6e-29 1
UNIPROTKB|Q9X4D0 - symbol:dnaG "DNA primase" species:1422... 317 9.5e-28 1
TIGR_CMR|CJE_1810 - symbol:CJE_1810 "DNA primase" species... 305 2.0e-26 1
TIGR_CMR|APH_0571 - symbol:APH_0571 "DNA primase" species... 304 5.2e-26 1
TIGR_CMR|NSE_0961 - symbol:NSE_0961 "DNA primase" species... 295 3.3e-24 1
UNIPROTKB|P63962 - symbol:dnaG "DNA primase" species:1773... 251 1.2e-18 1
>UNIPROTKB|P0ABS5 [details] [associations]
symbol:dnaG species:83333 "Escherichia coli K-12"
[GO:0008270 "zinc ion binding" evidence=IEA;IDA] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003896 "DNA primase activity"
evidence=IEA;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] InterPro:IPR002694
InterPro:IPR006295 InterPro:IPR013173 InterPro:IPR019475
Pfam:PF01807 Pfam:PF08278 Pfam:PF10410 PIRSF:PIRSF002811
SMART:SM00400 SMART:SM00766 InterPro:IPR006171 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:U28379 GO:GO:0003896 GO:GO:0030894 Gene3D:1.10.860.10
InterPro:IPR016136 PROSITE:PS50880 EMBL:J01687 EMBL:V00274
EMBL:V00346 PIR:A03423 RefSeq:NP_417538.1 RefSeq:YP_491258.1
PDB:1DD9 PDB:1DDE PDB:1EQN PDB:1T3W PDB:2HAJ PDB:3B39 PDBsum:1DD9
PDBsum:1DDE PDBsum:1EQN PDBsum:1T3W PDBsum:2HAJ PDBsum:3B39
ProteinModelPortal:P0ABS5 SMR:P0ABS5 DIP:DIP-47954N IntAct:P0ABS5
MINT:MINT-1222307 PRIDE:P0ABS5 EnsemblBacteria:EBESCT00000002137
EnsemblBacteria:EBESCT00000002138 EnsemblBacteria:EBESCT00000002139
EnsemblBacteria:EBESCT00000017276 GeneID:12933152 GeneID:947570
KEGG:ecj:Y75_p2992 KEGG:eco:b3066 PATRIC:32121546 EchoBASE:EB0235
EcoGene:EG10239 eggNOG:COG0358 HOGENOM:HOG000014483 KO:K02316
OMA:HMFDSML ProtClustDB:PRK05667 BioCyc:EcoCyc:EG10239-MONOMER
BioCyc:ECOL316407:JW3038-MONOMER BioCyc:MetaCyc:EG10239-MONOMER
EvolutionaryTrace:P0ABS5 Genevestigator:P0ABS5 Gene3D:3.90.580.10
Gene3D:3.90.980.10 InterPro:IPR013264 Pfam:PF13662 Pfam:PF08275
SMART:SM00493 TIGRFAMs:TIGR01391 Uniprot:P0ABS5
Length = 581
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 104/271 (38%), Positives = 163/271 (60%)
Query: 7 FYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEW-NALNKVFLDYNNINTLASS 63
FY+ L+ + A +L+KRGL+ E+I RF +G+AP W N L + + N +L +
Sbjct: 126 FYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDA 185
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G++V ++ + YDRFR R+MFPI++ G++IGFGGR++ ++ KY+NS
Sbjct: 186 GMLVTN-----------DQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNS 233
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
PET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+ H
Sbjct: 234 PETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADH 293
Query: 184 IKKILFYTNSIIFSFDGDQXXXXXXXXXLEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
I+ + TN++I +DGD+ LE L Y TD + ++F+FLPD DPD+ +RK
Sbjct: 294 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 353
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILNYNLKT 274
G + F ++ +AM L F ++ +L T
Sbjct: 354 GKEAFEARMEQAMPLSAFLFNSLMPQVDLST 384
>TIGR_CMR|CBU_1595 [details] [associations]
symbol:CBU_1595 "DNA primase" species:227377 "Coxiella
burnetii RSA 493" [GO:0003896 "DNA primase activity" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] InterPro:IPR002694 InterPro:IPR006295
InterPro:IPR013173 InterPro:IPR019475 Pfam:PF01807 Pfam:PF08278
Pfam:PF10410 PIRSF:PIRSF002811 SMART:SM00400 SMART:SM00766
InterPro:IPR006171 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003896 GO:GO:0030894
Gene3D:1.10.860.10 InterPro:IPR016136 HOGENOM:HOG000014483
KO:K02316 Gene3D:3.90.580.10 Gene3D:3.90.980.10 InterPro:IPR013264
Pfam:PF13662 Pfam:PF08275 SMART:SM00493 TIGRFAMs:TIGR01391
RefSeq:NP_820578.2 PRIDE:Q83BB7 GeneID:1209505 KEGG:cbu:CBU_1595
PATRIC:17931955 OMA:EDMIARR ProtClustDB:CLSK914890
BioCyc:CBUR227377:GJ7S-1574-MONOMER Uniprot:Q83BB7
Length = 572
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 115/285 (40%), Positives = 157/285 (55%)
Query: 5 SDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
S FY+ +LK S AI++LK RGL E +F +GYAPN W L + + L + G
Sbjct: 140 SRFYQRELKRSPTAIHYLKSRGLTGETAKQFAIGYAPNAWENLRPFAKNSKTQSQLVTHG 199
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
L+V K + + +DRFR RIMFPI++ G++I FGGR + + + KY+NSP
Sbjct: 200 LLVKK------------ENRCFDRFRHRIMFPIRDVRGRVIAFGGRSVGE-DLPKYMNSP 246
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ETPLF K NELYGL EA LI EGYMDV+ L Q G VA LGTA + H+
Sbjct: 247 ETPLFQKGNELYGLHEACKTHRPLPRALIVEGYMDVVSLHQHGITYAVATLGTATSVRHL 306
Query: 185 KKILFYTNSIIFSFDGDQXXXXXXXXXLEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+K+L YT+ II+ FDGD L L + I+FLFLP DPDS I+K G
Sbjct: 307 QKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDSLIQKIG 366
Query: 245 YKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEK-SKYNIEYL 288
+ F K+ +A L + F + +++I D +K +E+L
Sbjct: 367 REAFENKIDQAPPLSEVFFSHLQKEIPIRSIDDKAAFAKQALEHL 411
>TIGR_CMR|SO_1286 [details] [associations]
symbol:SO_1286 "DNA primase" species:211586 "Shewanella
oneidensis MR-1" [GO:0003896 "DNA primase activity" evidence=ISS]
[GO:0005658 "alpha DNA polymerase:primase complex" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] InterPro:IPR002694 InterPro:IPR006295
InterPro:IPR013173 InterPro:IPR019475 Pfam:PF01807 Pfam:PF08278
Pfam:PF10410 PIRSF:PIRSF002811 SMART:SM00400 SMART:SM00766
InterPro:IPR006171 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003896 GO:GO:0030894
Gene3D:1.10.860.10 InterPro:IPR016136 HOGENOM:HOG000014483
KO:K02316 Gene3D:3.90.580.10 Gene3D:3.90.980.10 InterPro:IPR013264
Pfam:PF13662 Pfam:PF08275 SMART:SM00493 TIGRFAMs:TIGR01391
RefSeq:NP_716908.1 HSSP:P02923 ProteinModelPortal:Q8EHD9 SMR:Q8EHD9
GeneID:1169105 KEGG:son:SO_1286 PATRIC:23522220 OMA:VIDFVME
ProtClustDB:CLSK906182 Uniprot:Q8EHD9
Length = 574
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 104/272 (38%), Positives = 160/272 (58%)
Query: 4 ASDFYKIQLK---NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI-NT 59
AS F++ QL+ + ++ I++L RGL+++I+ F +G+AP+ W+ L + + +
Sbjct: 120 ASRFFQTQLRQHQDKQKVIDYLAYRGLSDDIVEHFGIGFAPDGWDGLLSRYRQNQDAQDK 179
Query: 60 LASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAK 119
L ++G+++ N S KRYDRFR R+MFPI++ G++IGFGGR++ D K
Sbjct: 180 LLTAGMLIS------NDSG-----KRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGTP-K 227
Query: 120 YINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTAC 179
Y+NSPETP+FHK NELYGL+E K VLI EGYMDV+ L+Q+G VA LGT+
Sbjct: 228 YLNSPETPIFHKGNELYGLYELKQRHRDPDKVLIVEGYMDVVALAQYGVDYAVASLGTST 287
Query: 180 TSTHIKKILFYTNSIIFSFDGDQXXXXXXXXXLEVCL-LYATDDKIIKFLFLPDKYDPDS 238
T+ + +L +I +DGD+ LE L L DK+ +F+FLP DPDS
Sbjct: 288 TAEQFQLLLRSAKEVICCYDGDRAGNEAAWRALETALPLLKPGDKV-RFMFLPQSEDPDS 346
Query: 239 YIRKFGYKIFSKKVLEAMSLLQFFLEEIILNY 270
+RK G F + + A++L +F + + +
Sbjct: 347 MVRKIGKDPFEQLMESAITLPEFLFDTLATKF 378
>TIGR_CMR|CPS_4335 [details] [associations]
symbol:CPS_4335 "DNA primase" species:167879 "Colwellia
psychrerythraea 34H" [GO:0003896 "DNA primase activity"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] InterPro:IPR002694 InterPro:IPR006295
InterPro:IPR013173 InterPro:IPR019475 Pfam:PF01807 Pfam:PF08278
Pfam:PF10410 PIRSF:PIRSF002811 SMART:SM00400 SMART:SM00766
InterPro:IPR006171 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003896 GO:GO:0030894
Gene3D:1.10.860.10 InterPro:IPR016136 eggNOG:COG0358
HOGENOM:HOG000014483 KO:K02316 Gene3D:3.90.580.10
Gene3D:3.90.980.10 InterPro:IPR013264 Pfam:PF13662 Pfam:PF08275
SMART:SM00493 TIGRFAMs:TIGR01391 OMA:VGRYHCF RefSeq:YP_270984.1
ProteinModelPortal:Q47W38 SMR:Q47W38 STRING:Q47W38 GeneID:3522342
KEGG:cps:CPS_4335 PATRIC:21471515
BioCyc:CPSY167879:GI48-4344-MONOMER Uniprot:Q47W38
Length = 585
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 114/368 (30%), Positives = 193/368 (52%)
Query: 5 SDFYKIQLK--NSKE-AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA 61
S F++ QLK + KE AI++LK RGL+ E++ RF +GY + W+ + +N+ +
Sbjct: 130 SRFFQQQLKVASDKERAIDYLKARGLSGEVVKRFGIGYISDAWDGV---------MNSFS 180
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+G ++I+ + + +K + YDRFRGRIMFPI + G++IGFGGR++ D + KY+
Sbjct: 181 RNGQANQQLID-LGMAISGDKKRPYDRFRGRIMFPISDKRGRVIGFGGRVLGDE-KPKYL 238
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET ++HK ELYGL EAK A ++ +++ EGYMDV+ L+Q G VA LGTA T
Sbjct: 239 NSPETRVYHKGQELYGLHEAKQANKQLKRLIVVEGYMDVVALAQHGVDYAVASLGTATTF 298
Query: 182 THIKKILFYTNSIIFSFDGDQXXXXXXXXXLEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
++ + +I +DGD+ +E L D +KF+FLPD DPDS I
Sbjct: 299 EQLQTLFRTVPDVICCYDGDRAGRDAAWRAMENALPLIRDGFSLKFVFLPDGEDPDSLIG 358
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIE-YLFKIIPXXXXXXX 300
G + F + A+ L +F E+++ ++ +++ + + YL K+ P
Sbjct: 359 TQGQQAFETIIDNAVPLSKFLFEQLMQKVDMSSLEGRAALVESFQPYLSKL-PDSILKDA 417
Query: 301 XXXXXXXXXXXXXFNEINNLFK-INTSSIKHKTIEKKNIQPICIEYQIMKLLISYPSLIN 359
+ K I ++++K + + P+ + LL+ +P + N
Sbjct: 418 MLNEIANNFGTGSEQFLAKFTKSIKSTAVKTAVKTRTKVTPV---RSALALLLEHPHIAN 474
Query: 360 EINSEDMI 367
+ +++
Sbjct: 475 SLGDINVL 482
>TIGR_CMR|BA_4516 [details] [associations]
symbol:BA_4516 "DNA primase" species:198094 "Bacillus
anthracis str. Ames" [GO:0003896 "DNA primase activity"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] InterPro:IPR002694 InterPro:IPR006295
InterPro:IPR013173 InterPro:IPR019475 Pfam:PF01807 Pfam:PF10410
PIRSF:PIRSF002811 SMART:SM00400 SMART:SM00766 InterPro:IPR006171
GO:GO:0046872 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0003896
GO:GO:0030894 HOGENOM:HOG000014483 KO:K02316 ProtClustDB:PRK05667
Gene3D:3.90.580.10 Gene3D:3.90.980.10 InterPro:IPR013264
Pfam:PF13662 Pfam:PF08275 SMART:SM00493 TIGRFAMs:TIGR01391
RefSeq:NP_846740.1 RefSeq:YP_021161.1 RefSeq:YP_030443.1
HSSP:Q9X4D0 ProteinModelPortal:Q81LU4 SMR:Q81LU4 IntAct:Q81LU4
DNASU:1088242 EnsemblBacteria:EBBACT00000011868
EnsemblBacteria:EBBACT00000015052 EnsemblBacteria:EBBACT00000021626
GeneID:1088242 GeneID:2819029 GeneID:2852222 KEGG:ban:BA_4516
KEGG:bar:GBAA_4516 KEGG:bat:BAS4195 OMA:LELVEVC
BioCyc:BANT260799:GJAJ-4251-MONOMER
BioCyc:BANT261594:GJ7F-4393-MONOMER Uniprot:Q81LU4
Length = 598
Score = 404 (147.3 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 89/266 (33%), Positives = 142/266 (53%)
Query: 10 IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTLASSGLVVD 68
+ + EA+++L KRG+ +E+I +F +GYA W+A K+ +++++ +GL++
Sbjct: 133 VNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRGLSLSSMEQAGLLIR 192
Query: 69 KIINKVNQSPVIEKY-KRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETP 127
EK YDRFRGR+MFPI G++I F GR + D KY+NSPETP
Sbjct: 193 S-----------EKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRALGDDTP-KYLNSPETP 240
Query: 128 LFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKI 187
+FHKS LY +A+ I K G V++ EGY DV+ + G + VA +GTA T K +
Sbjct: 241 IFHKSKLLYNFHQARPFIRKRGQVVLFEGYADVLAAVKSGVEEAVATMGTALTEEQAKLL 300
Query: 188 LFYTNSIIFSFDGDQXXXXXXXXXLEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKI 247
+++ +DGD+ ++ L K+ LPDK DPD Y++++G
Sbjct: 301 RRNVETVVLCYDGDKAGREATMKAGQLLLQVGCQVKVTS---LPDKLDPDEYVQQYGTTA 357
Query: 248 FSKKVLEAMSLLQFFLEEIILNYNLK 273
F V ++S + F + + L NL+
Sbjct: 358 FENLVKSSISFVGFKINYLRLGKNLQ 383
Score = 39 (18.8 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 262 FLEEIILNYNLKTIKDIEKSKYNIEYLFKI 291
+ EE++ ++ L+T++ ++ +E +FKI
Sbjct: 544 YTEEVLQSH-LETLRRHQEKLEKMEIIFKI 572
>TIGR_CMR|CHY_0454 [details] [associations]
symbol:CHY_0454 "DNA primase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003896 "DNA primase
activity" evidence=ISS] [GO:0006269 "DNA replication, synthesis of
RNA primer" evidence=ISS] InterPro:IPR002694 InterPro:IPR006295
Pfam:PF01807 PIRSF:PIRSF002811 SMART:SM00400 InterPro:IPR006171
GO:GO:0046872 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0008270 GO:GO:0003896 GO:GO:0030894 eggNOG:COG0358
HOGENOM:HOG000014483 KO:K02316 Gene3D:3.90.580.10
Gene3D:3.90.980.10 InterPro:IPR013264 Pfam:PF13662 Pfam:PF08275
SMART:SM00493 TIGRFAMs:TIGR01391 RefSeq:YP_359315.1
ProteinModelPortal:Q3AEW9 STRING:Q3AEW9 GeneID:3727622
KEGG:chy:CHY_0454 PATRIC:21274069 OMA:YFDALAF
BioCyc:CHYD246194:GJCN-455-MONOMER Uniprot:Q3AEW9
Length = 575
Score = 363 (132.8 bits), Expect = 6.2e-33, P = 6.2e-33
Identities = 124/423 (29%), Positives = 200/423 (47%)
Query: 1 MICASDFYKIQLKNSK--EAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN 58
++ A+ FY LK +A ++L+ RG+ EE + F LG+AP+ AL FL N
Sbjct: 111 LLLAAKFYHEILKTEAAGKARDYLQSRGITEETVKDFMLGFAPSA-KAL-PAFLSSKGYN 168
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
LV I+ K + +DRF GR++FPI + +G+++GFGGR + + +
Sbjct: 169 P---GELVKIGIVTKSYSGNL------HDRFAGRLIFPIFDREGRVVGFGGRALGEE-KP 218
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY NSP++ +F K YG +A+ I + ++ EGY DVI L Q G +A LGTA
Sbjct: 219 KYFNSPQSVIFDKGKLFYGFKQARTTIREKRQAILVEGYFDVISLHQAGVKNAIACLGTA 278
Query: 179 CTSTHIK--KILFYTNSIIFSFDGDQXXXXXXXXXLEVCLLYATDDKIIKFLFLPDKYDP 236
T H+ K Y II ++D DQ LE+ L+ A+ D IK + L + DP
Sbjct: 279 FTEEHLNFLKNYGYIEEIILAYDSDQAGEKAAYRALEM-LVRASADLSIKIIRLGEFKDP 337
Query: 237 DSYIRKFGYKIFSKKVLEAMSLLQFFLE-EIILNYNLKTIKDIEKSKYNIEYL---FKII 292
D I+ G F +++ +A + +F LE E+ +L + K I YL ++
Sbjct: 338 DELIKNRGATAFLEEIEKAKTPAEFLLELELKEKSSLNLNEQRALLKKLIPYLVLEYEKT 397
Query: 293 PXXXXXXXXXXXXXXXXXXXXF-NEINN-LFK-----INTSSI-KHKTIEKKNIQPICIE 344
P +EI ++K +N SS ++ T E KN + +E
Sbjct: 398 PALFAERIGGIASKLKMSEGALVDEIRREIYKNEEKSLNNSSFGENITNEHKNYGLLKVE 457
Query: 345 YQIMKLLISYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDIDHSKFIKYLK 404
+++ LL+ YP E + D + +N ++F L + + D +S ++ YL+
Sbjct: 458 SELLGLLLEYPEYQKEFLN-DFFFYEFQGKNQ-EVFNYLKENKFPDREDPLYS-YMTYLR 514
Query: 405 KIN 407
IN
Sbjct: 515 -IN 516
>TIGR_CMR|GSU_3090 [details] [associations]
symbol:GSU_3090 "DNA primase" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003896 "DNA primase activity"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] InterPro:IPR002694 InterPro:IPR006295
InterPro:IPR019475 Pfam:PF01807 Pfam:PF10410 PIRSF:PIRSF002811
SMART:SM00400 InterPro:IPR006171 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003896
GO:GO:0030894 HOGENOM:HOG000014483 KO:K02316 OMA:HMFDSML
Gene3D:3.90.580.10 Gene3D:3.90.980.10 InterPro:IPR013264
Pfam:PF13662 Pfam:PF08275 SMART:SM00493 TIGRFAMs:TIGR01391
RefSeq:NP_954131.1 ProteinModelPortal:Q748B7 GeneID:2686785
KEGG:gsu:GSU3090 PATRIC:22029035 ProtClustDB:CLSK829102
BioCyc:GSUL243231:GH27-3064-MONOMER Uniprot:Q748B7
Length = 587
Score = 342 (125.4 bits), Expect = 1.6e-30, P = 1.6e-30
Identities = 88/281 (31%), Positives = 144/281 (51%)
Query: 1 MICASDFYKIQLKNSKEA---INFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNI 57
M A+ Y+ L+ ++EA +L+ RG++ E + LG+AP+ W+ L++ L + +
Sbjct: 119 MDLAARLYREALERNEEAGAARRYLETRGVDRETSEAYRLGFAPDRWDYLSR-HLQHRKV 177
Query: 58 NT-LASS-GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDS 115
+ LA GLV + E +D FR R++F I + G+ IGFGGR++ DS
Sbjct: 178 SMDLAERLGLVRRR-----------EGGGYFDIFRNRLLFAITDIHGRTIGFGGRVLDDS 226
Query: 116 NEAKYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAIL 175
KYINSPE+P++HKS+ L+G+ AK A+ + G +I EGY D + L Q G VA
Sbjct: 227 LP-KYINSPESPIYHKSDVLFGVHLAKGALREQGSAIIVEGYFDHLALYQAGVRNVVATC 285
Query: 176 GTACTSTHIKKILFYTNSIIFSFDGDQXXXXXXXXXLEVCLLYATDDKIIKFLFLPDKYD 235
GTA T H+K + Y FD D +++ L +++ L D
Sbjct: 286 GTALTEGHVKLLRRYAGKAYTLFDADSAGRKATVRAIDLFLAENFPAHVVE---LTQGED 342
Query: 236 PDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIK 276
PDS+++K G IF ++ +A F +++ + T++
Sbjct: 343 PDSFVKKEGADIFRTRLAKARPAFDFLFRDLLGQVDAGTVE 383
>TIGR_CMR|SPO_1749 [details] [associations]
symbol:SPO_1749 "DNA primase" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0003896 "DNA primase activity" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] InterPro:IPR002694 InterPro:IPR006295
InterPro:IPR019475 Pfam:PF01807 Pfam:PF10410 PIRSF:PIRSF002811
SMART:SM00400 InterPro:IPR006171 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003896 GO:GO:0030894 KO:K02316 ProtClustDB:PRK05667
Gene3D:3.90.580.10 Gene3D:3.90.980.10 InterPro:IPR013264
Pfam:PF13662 Pfam:PF08275 SMART:SM00493 TIGRFAMs:TIGR01391
HOGENOM:HOG000014484 RefSeq:YP_166987.1 ProteinModelPortal:Q5LSL8
GeneID:3195570 KEGG:sil:SPO1749 PATRIC:23376821 OMA:LFHKGNV
Uniprot:Q5LSL8
Length = 649
Score = 337 (123.7 bits), Expect = 8.3e-30, P = 8.3e-30
Identities = 83/256 (32%), Positives = 129/256 (50%)
Query: 7 FYKIQLK--NSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSG 64
F+++ L A ++L +RGL+ + + R+ +G+AP+ W L D+ L G
Sbjct: 127 FFRLNLSAGGGGAARDYLARRGLSAQALERWEIGFAPDGWQGL----WDH-----LRGKG 177
Query: 65 LVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSP 124
+ + I P + K YD FR RIMFPI++ G+ I FGGR + + AKY+NSP
Sbjct: 178 VGEELITGAGLAKPSTKGGKPYDTFRNRIMFPIRDARGRCIAFGGRAMDPKDNAKYLNSP 237
Query: 125 ETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI 184
ET LF K L+ A+ A + +++ EGYMDVI L++ GF VA LGTA T +
Sbjct: 238 ETLLFDKGRSLFNHGPARTAAGQGQPLIVAEGYMDVIALAEAGFGAAVAPLGTAVTEHQL 297
Query: 185 KKILFYTNSIIFSFDGDQXXXXXXXXXLEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFG 244
+ I + I + DGD +++ L K ++F +P+ DPD IR G
Sbjct: 298 QMIWRIADEPIVALDGDTAGLRAALRVVDLALPLLEAGKSVRFAIMPEGKDPDDLIRAEG 357
Query: 245 YKIFSKKVLEAMSLLQ 260
+ +A ++Q
Sbjct: 358 PAAMQSVLDQARPMVQ 373
>TIGR_CMR|ECH_0761 [details] [associations]
symbol:ECH_0761 "DNA primase" species:205920 "Ehrlichia
chaffeensis str. Arkansas" [GO:0003896 "DNA primase activity"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] InterPro:IPR002694 InterPro:IPR006295
Pfam:PF01807 PIRSF:PIRSF002811 SMART:SM00400 InterPro:IPR006171
GO:GO:0046872 GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0008270 GO:GO:0003896 GO:GO:0030894 eggNOG:COG0358 KO:K02316
Gene3D:3.90.580.10 Gene3D:3.90.980.10 InterPro:IPR013264
Pfam:PF13662 Pfam:PF08275 SMART:SM00493 TIGRFAMs:TIGR01391
OMA:KDPYDIC RefSeq:YP_507559.1 STRING:Q2GG74 GeneID:3928074
KEGG:ech:ECH_0761 PATRIC:20576956 HOGENOM:HOG000014484
ProtClustDB:CLSK749506 BioCyc:ECHA205920:GJNR-764-MONOMER
Uniprot:Q2GG74
Length = 588
Score = 308 (113.5 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 88/280 (31%), Positives = 137/280 (48%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTLAS 62
A+ +++ QL+N+ AI +++ R ++ + + +F +GYAP L K L NI+ + +
Sbjct: 108 ATLWFEEQLRNNHVAIEYIRSRKISNDTVKKFRMGYAPTY--GLGKYLLSLGFNIDDIKN 165
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GL +N NQ D F R++FPI N+ G IIGFGGR I + KY+N
Sbjct: 166 TGL-----LNSQNQ----------DYFYNRVIFPICNSSGNIIGFGGRSIISTQNPKYLN 210
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
S + F K LY A +K G +++ EGYMDV+ L Q G V +LGT+ TS
Sbjct: 211 SKGSAFFQKRENLYASHFAVREAKKQGKIIVVEGYMDVLMLHQMGISNVVGLLGTSMTSE 270
Query: 183 HIKKILFYTNSIIFSFDGDQXXXXXXXXXLEVCLLYATDDKIIKFLFLPDKYDP-DSYIR 241
H+ + T+ II DGD + L IIKF+ + DP D I
Sbjct: 271 HVMYLWEITSEIIVWMDGDIAGKMASIKSASLALSLIRPGCIIKFVDVFTGKDPYDICIN 330
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKS 281
+ + +L++ LL E I +Y L + ++ K+
Sbjct: 331 DGVDSVIA--LLDSAKLLS----EFIWDYELARV-NVNKN 363
Score = 47 (21.6 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 391 KNDIDHSKFIKYLKKINKNFESIIVKIQDNFEYSIEIAKKTL 432
KN++D + + ++ I + S + +QD EYS++++KK +
Sbjct: 504 KNNLD--EIVNFV--IKRMSTSNFMVLQDR-EYSVDVSKKEI 540
>TIGR_CMR|DET_0552 [details] [associations]
symbol:DET_0552 "DNA primase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003896 "DNA primase
activity" evidence=ISS] [GO:0006269 "DNA replication, synthesis of
RNA primer" evidence=ISS] InterPro:IPR002694 InterPro:IPR006295
InterPro:IPR019475 Pfam:PF01807 Pfam:PF10410 PIRSF:PIRSF002811
InterPro:IPR006171 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0003896 GO:GO:0030894
eggNOG:COG0358 HOGENOM:HOG000014483 KO:K02316 Gene3D:3.90.580.10
Gene3D:3.90.980.10 InterPro:IPR013264 Pfam:PF13662 Pfam:PF08275
SMART:SM00493 TIGRFAMs:TIGR01391 RefSeq:YP_181296.1
ProteinModelPortal:Q3Z903 STRING:Q3Z903 GeneID:3230114
KEGG:det:DET0552 PATRIC:21608173 OMA:VIISYDA ProtClustDB:CLSK837409
BioCyc:DETH243164:GJNF-552-MONOMER Uniprot:Q3Z903
Length = 590
Score = 328 (120.5 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 90/267 (33%), Positives = 131/267 (49%)
Query: 2 ICASDFYKIQLKNSKEAIN---FLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNIN 58
+ A+ +Y L NS +A + +LK RGLNE+ + F LGYA EW L DY
Sbjct: 113 LAAAQYYHNLLLNSPQAESARSYLKSRGLNEQSLADFQLGYALPEWQGL----YDYLKER 168
Query: 59 TLASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEA 118
+ L+ +I + ++ + +DRFR I++PI N GQI GFG R++ D+++
Sbjct: 169 SYTDEDLLKAGVIVRSDEGRI------HDRFRNNIIYPIANYKGQIAGFGARVM-DNSQP 221
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY NSP+T LF+KS+ LYGL A +I + +I EGYMD I Q GF TVA +GTA
Sbjct: 222 KYRNSPQTDLFNKSSLLYGLHLASASIREKNQAIIVEGYMDAIMSHQGGFTNTVACMGTA 281
Query: 179 CTSTHIKKILFYTNSIIFSFDGDQXXXXXXXXXLEVCLLYATD-DKIIKFLFLPDKYDPD 237
T I + T +I D D ++ Y + I+ DPD
Sbjct: 282 LTDRQIALVKRQTKHLILGLDADSAGEEATLRAID----YENQIESEIRVAVPEGGKDPD 337
Query: 238 SYIRKFGYKIFSKKVLEAMSLLQFFLE 264
IR + + + + A LL + E
Sbjct: 338 EIIRH-APQTWQEILDNARPLLDYIFE 363
>UNIPROTKB|Q9X4D0 [details] [associations]
symbol:dnaG "DNA primase" species:1422 "Geobacillus
stearothermophilus" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR002694 InterPro:IPR006295 InterPro:IPR007693
InterPro:IPR019475 Pfam:PF01807 Pfam:PF10410 PIRSF:PIRSF002811
SMART:SM00400 InterPro:IPR006171 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003678 GO:GO:0003896
GO:GO:0032508 GO:GO:0030894 SUPFAM:SSF48024 PROSITE:PS50880
Gene3D:3.90.580.10 Gene3D:3.90.980.10 InterPro:IPR013264
Pfam:PF13662 Pfam:PF08275 SMART:SM00493 TIGRFAMs:TIGR01391
EMBL:AF106033 PDB:1D0Q PDB:1Z8S PDB:2R6A PDB:2R6C PDBsum:1D0Q
PDBsum:1Z8S PDBsum:2R6A PDBsum:2R6C ProteinModelPortal:Q9X4D0
SMR:Q9X4D0 DIP:DIP-48436N EvolutionaryTrace:Q9X4D0 Uniprot:Q9X4D0
Length = 597
Score = 317 (116.6 bits), Expect = 9.5e-28, P = 9.5e-28
Identities = 94/289 (32%), Positives = 148/289 (51%)
Query: 7 FYKIQLKNSKE---AINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTLAS 62
FY L ++KE A+++L+ RG +E I RF +GYAP+ +A K+ ++ ++ +
Sbjct: 128 FYHHLLVHTKEGQAALDYLQARGWTKETIDRFEIGYAPDAPDAAAKLLESHSFSLPVMEK 187
Query: 63 SGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYIN 122
+GL+ K E + RFR RIMFPI + G+ +GF GRL+ + + KY+N
Sbjct: 188 AGLLTKK-----------EDGRYVGRFRNRIMFPIHDHRGETVGFSGRLLGEGHP-KYVN 235
Query: 123 SPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTST 182
SPETP+F K LY A+ I K L+ EG+ DVI +Q G +A +GT+ T
Sbjct: 236 SPETPVFRKGAILYHFHAARVPIRKRQEALLVEGFADVISAAQAGIDYAIATMGTSLTEE 295
Query: 183 HIKKILFYTNSIIFSFDGDQXXXXXXXXXLEVCLLYATDDKIIKFLFLPDKYDPDSYIRK 242
+ IL ++I +DGD+ E L A ++ K LP+ DPD YIR
Sbjct: 296 QAR-ILRPCDTITICYDGDRAGIEAAWAAAEQ--LSALGCRV-KVASLPNGLDPDEYIRV 351
Query: 243 FGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKI 291
+G + F+ + L+ F + + NL+ + E+ +Y E L +I
Sbjct: 352 YGGERFAGEAGCRRPLVAFKMAYLRRGKNLQ--HEGERLRYIDEALREI 398
>TIGR_CMR|CJE_1810 [details] [associations]
symbol:CJE_1810 "DNA primase" species:195099
"Campylobacter jejuni RM1221" [GO:0003896 "DNA primase activity"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] InterPro:IPR002694 InterPro:IPR006295
Pfam:PF01807 PIRSF:PIRSF002811 SMART:SM00400 InterPro:IPR006171
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003896 GO:GO:0030894
eggNOG:COG0358 KO:K02316 ProtClustDB:PRK05667 Gene3D:3.90.580.10
Gene3D:3.90.980.10 InterPro:IPR013264 Pfam:PF13662 Pfam:PF08275
SMART:SM00493 TIGRFAMs:TIGR01391 RefSeq:YP_179780.1
ProteinModelPortal:Q5HSF5 STRING:Q5HSF5 GeneID:3232437
KEGG:cjr:CJE1810 PATRIC:20045442 HOGENOM:HOG000104729 OMA:KQLASLM
BioCyc:CJEJ195099:GJC0-1844-MONOMER Uniprot:Q5HSF5
Length = 605
Score = 305 (112.4 bits), Expect = 2.0e-26, P = 2.0e-26
Identities = 114/441 (25%), Positives = 194/441 (43%)
Query: 7 FYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLV 66
++K LK+ KE + +L +R LN++ I +F LG+A ++I L + +
Sbjct: 117 YFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAG----------ASEDSIRLLRNQKIP 166
Query: 67 VDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPET 126
++ ++ V E + Y F RI FPI + ++GFGGR + + AKY+NSP+
Sbjct: 167 LEDAMS-VGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQN 225
Query: 127 PLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKK 186
LF KS Y AK I K +++ EGYMD I + GF VA+LGTA T H+
Sbjct: 226 ILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGTALTEHHLPL 285
Query: 187 ILFYTNSIIFSFDGDQXXXXXXXXXLEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYK 246
I Y +I FD D+ L +T+ K L DP + K
Sbjct: 286 IRRYDAKVILCFDNDEAGLKAATRS---AFLLSTNKIDGKVAILQGGKDPAELVAKNEST 342
Query: 247 IFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIE-YLFKIIPXXXXXXXXXXXX 305
+ E + L +F++ +I +++ + D +K+ I+ + F + P
Sbjct: 343 KLHDILDEGIELGEFYIRRLISTHSIISALDKQKALEAIQKFTFNLEPLVANSYTSLVSN 402
Query: 306 XXXXXXXXFNEINNLFK-INTSSIKHK--TIEKKNIQPICIEYQIMKLLISYPSLINEIN 362
N K I+T I K+ I E +++ L +P + N+
Sbjct: 403 LLKVDEKFIVLSQNSKKTIHTPLISQNKYNFPKEKIH--IAELELIAFLKQHPDICNDFK 460
Query: 363 S-EDMIIFS-KCSQNYV--KMFFQLIDTIHIFKN-----DIDHSKFIKYLKKINKNFESI 413
D + F K + + K ++ D I F+N ++++S+F+ + K+N F +
Sbjct: 461 QISDSVCFKHKILLDKILEKKGYEDSD-IREFENKNIRKNLNYSEFLLGICKVNLAFLNN 519
Query: 414 IVKIQDNFEYSIEIAKKTLLD 434
VKI+ N +++ TL+D
Sbjct: 520 -VKIK-NSTLALKKQLFTLID 538
>TIGR_CMR|APH_0571 [details] [associations]
symbol:APH_0571 "DNA primase" species:212042 "Anaplasma
phagocytophilum HZ" [GO:0003896 "DNA primase activity"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] InterPro:IPR002694 InterPro:IPR006295
Pfam:PF01807 PIRSF:PIRSF002811 SMART:SM00400 InterPro:IPR006171
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0003896 GO:GO:0030894
eggNOG:COG0358 KO:K02316 Gene3D:3.90.580.10 Gene3D:3.90.980.10
InterPro:IPR013264 Pfam:PF13662 Pfam:PF08275 SMART:SM00493
TIGRFAMs:TIGR01391 OMA:KDPYDIC HOGENOM:HOG000014484
ProtClustDB:CLSK749506 RefSeq:YP_505162.1 STRING:Q2GKD9
GeneID:3930161 KEGG:aph:APH_0571 PATRIC:20949806
BioCyc:APHA212042:GHPM-595-MONOMER Uniprot:Q2GKD9
Length = 607
Score = 304 (112.1 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 85/266 (31%), Positives = 130/266 (48%)
Query: 4 ASDFYKIQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASS 63
A+ F QL SK A+++LK RG+++ I RF LGY + + L S
Sbjct: 119 AAVFLSQQLSVSKAALSYLKDRGISDSTINRFRLGYVTSTGIKAH-----------LLSL 167
Query: 64 GLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINS 123
G+ ++K+ +++ ++ K + D RI+FPI N G++I GGR I + KY+NS
Sbjct: 168 GISMEKM----SETGLLTKSVQ-DCLYNRIIFPICNPMGKVIALGGRSITPGHTPKYLNS 222
Query: 124 PETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTH 183
E LF K +YGL A +K G +++ EGYMDV+ LSQ G V +LGT+ T H
Sbjct: 223 AENALFKKRECMYGLHLAMGQAKKLGKIIVVEGYMDVLMLSQLGIHNVVGLLGTSMTEFH 282
Query: 184 IKKILFYTNSIIFSFDGDQXXXXXXXXXLEVCLLYATDDKIIKFLFLPDKYDPDSYIRKF 243
+K I II DGD ++ + I+F+ + + DP R+
Sbjct: 283 LKNIWSVVPEIIVWLDGDFAGLKASVKIAQLAVSIMKSGSSIRFISIAEGKDPYDICREQ 342
Query: 244 GYKIFSKKVLEAMSLLQFFLEEIILN 269
F K ++E LL F+ E L+
Sbjct: 343 SID-FVKDLIERAKLLSEFIWEYELS 367
>TIGR_CMR|NSE_0961 [details] [associations]
symbol:NSE_0961 "DNA primase" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003896 "DNA primase
activity" evidence=ISS] [GO:0006269 "DNA replication, synthesis of
RNA primer" evidence=ISS] InterPro:IPR002694 InterPro:IPR006295
Pfam:PF01807 SMART:SM00400 InterPro:IPR006171 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0003896 GO:GO:0030894 eggNOG:COG0358 KO:K02316
Gene3D:3.90.580.10 Gene3D:3.90.980.10 InterPro:IPR013264
Pfam:PF13662 Pfam:PF08275 SMART:SM00493 TIGRFAMs:TIGR01391
RefSeq:YP_506825.1 ProteinModelPortal:Q2GCH1 STRING:Q2GCH1
GeneID:3931738 KEGG:nse:NSE_0961 PATRIC:22681895
HOGENOM:HOG000127147 OMA:KDPYDIC ProtClustDB:CLSK2527994
BioCyc:NSEN222891:GHFU-963-MONOMER Uniprot:Q2GCH1
Length = 579
Score = 295 (108.9 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 83/225 (36%), Positives = 120/225 (53%)
Query: 74 VNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSN 133
+ S V++K R FR R++FPI N G++IGFG R++K+ KYINS ET F KS
Sbjct: 169 IKNSGVLDKLGRC-YFRDRLVFPIHNIQGKVIGFGSRVVKEGIFPKYINSCETEFFKKSE 227
Query: 134 ELYGLFEA-KNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTN 192
LY + + KN+ E +++ EGYMDVI L QFG+ + ILGT+ TS H+K +
Sbjct: 228 LLYNIDKIPKNSEEP---IILVEGYMDVISLCQFGYKSVLGILGTSITSHHLKLLNRLRR 284
Query: 193 SIIFSFDGDQXXXXXXXXXLEVCLLYATDDKIIK--FLFLPDKYDPDSYIRKFGYKIFSK 250
++IF FDGD +E+ + + IK F FLP DPD +R + +
Sbjct: 285 NLIFCFDGDNAGIKAAGRVVELIMDEFINSLEIKTTFSFLPIGKDPDDLVRSD--RAAFQ 342
Query: 251 KVLE-AMSLLQ--FFLEEIILNYNLKTIKD-IEKSKYNIEYLFKI 291
+VL+ A SL FFL + + +D IE K +YL +
Sbjct: 343 RVLDGARSLSDTIFFLAKY--GRQCSSPEDFIELEKILEKYLINV 385
Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 53/157 (33%), Positives = 81/157 (51%)
Query: 16 KEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGLVVDKIINKVN 75
+EA +++ R L++++I F LGY P+ + F+ N S+ +
Sbjct: 127 QEASYYIRNR-LDDDVISEFKLGYCPSNLTS----FI--NKTKNFPST---------VIK 170
Query: 76 QSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPETPLFHKSNEL 135
S V++K R FR R++FPI N G++IGFG R++K+ KYINS ET F KS L
Sbjct: 171 NSGVLDKLGRC-YFRDRLVFPIHNIQGKVIGFGSRVVKEGIFPKYINSCETEFFKKSELL 229
Query: 136 YGLFEA-KNAIEK----SGYV----LITEGYMDVIGL 163
Y + + KN+ E GY+ L GY V+G+
Sbjct: 230 YNIDKIPKNSEEPIILVEGYMDVISLCQFGYKSVLGI 266
>UNIPROTKB|P63962 [details] [associations]
symbol:dnaG "DNA primase" species:1773 "Mycobacterium
tuberculosis" [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] InterPro:IPR002694
InterPro:IPR006295 InterPro:IPR013173 InterPro:IPR019475
Pfam:PF01807 Pfam:PF08278 Pfam:PF10410 PIRSF:PIRSF002811
SMART:SM00400 SMART:SM00766 InterPro:IPR006171 GO:GO:0005886
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:BX842579 GO:GO:0003896 GO:GO:0030894 PROSITE:PS50880
eggNOG:COG0358 KO:K02316 ProtClustDB:PRK05667 Gene3D:3.90.580.10
Gene3D:3.90.980.10 InterPro:IPR013264 Pfam:PF13662 Pfam:PF08275
SMART:SM00493 TIGRFAMs:TIGR01391 PIR:H70661 RefSeq:NP_216859.1
RefSeq:NP_336887.1 RefSeq:YP_006515777.1 ProteinModelPortal:P63962
SMR:P63962 PRIDE:P63962 EnsemblBacteria:EBMYCT00000000306
EnsemblBacteria:EBMYCT00000071727 GeneID:13319049 GeneID:885996
GeneID:924001 KEGG:mtc:MT2408 KEGG:mtu:Rv2343c KEGG:mtv:RVBD_2343c
PATRIC:18127046 TubercuList:Rv2343c HOGENOM:HOG000014485
OMA:VGRYHCF Uniprot:P63962
Length = 639
Score = 251 (93.4 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 76/281 (27%), Positives = 126/281 (44%)
Query: 4 ASDFYK--IQLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYN-NINTL 60
A+ FY +Q + A +L +R + +F G+AP+ W++L K L
Sbjct: 124 AAAFYAQALQSDEAAPARQYLTERSFDAAAARKFGCGFAPSGWDSLTKHLQRKGFEFEEL 183
Query: 61 ASSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSN--EA 118
++GL + P+ DRF R+++PI+ + G+++GFG R + D + EA
Sbjct: 184 EAAGLS-----RQGRHGPM-------DRFHRRLLWPIRTSAGEVVGFGARRLFDDDAMEA 231
Query: 119 KYINSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTA 178
KY+N+PET L+ KS+ ++G+ AK I K ++ EGY DV+ + G VA GTA
Sbjct: 232 KYVNTPETLLYKKSSVMFGIDLAKRDIAKGHQAVVVEGYTDVMAMHLAGVTTAVASCGTA 291
Query: 179 CTSTHI---KKIL----FYTNSIIFSFDGDQXXXXXXXXXLEVCLLYATDDKIIKFLFLP 231
H+ ++++ F+ +I+ FDGD+ + A + P
Sbjct: 292 FGGEHLAMLRRLMMDDSFFRGELIYVFDGDEAGRAAALKAFDGEQKLAGQSFVA---VAP 348
Query: 232 DKYDPDSYIRKFGYKIFSKKVLEAMSLLQFFLEEIILNYNL 272
D DP K G V L +F + I +L
Sbjct: 349 DGMDPCDLRLKCGDAALRDLVARRTPLFEFAIRAAIAEMDL 389
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.141 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 444 415 0.00081 118 3 11 22 0.36 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 15
No. of states in DFA: 594 (63 KB)
Total size of DFA: 235 KB (2128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.98u 0.14s 34.12t Elapsed: 00:00:02
Total cpu time: 33.98u 0.14s 34.12t Elapsed: 00:00:02
Start: Thu Aug 15 16:34:44 2013 End: Thu Aug 15 16:34:46 2013