RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15222
(444 letters)
>d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia
coli [TaxId: 562]}
Length = 314
Score = 158 bits (401), Expect = 1e-45
Identities = 112/312 (35%), Positives = 176/312 (56%), Gaps = 14/312 (4%)
Query: 4 ASDFYKIQLKN--SKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLA 61
+ FY+ L+ + A +L+KRGL+ E+I RF +G+AP W+ + K F
Sbjct: 9 LNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNP------ 62
Query: 62 SSGLVVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYI 121
+ + ++ + YDRFR R+MFPI++ G++IGFGGR++ + + KY+
Sbjct: 63 ----ENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYL 117
Query: 122 NSPETPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTS 181
NSPET +FHK +LYGL+EA+ + +L+ EGYMDV+ L+Q+G VA LGT+ T+
Sbjct: 118 NSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTA 177
Query: 182 THIKKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIR 241
HI+ + TN++I +DGD+AGR AA RALE L Y TD + ++F+FLPD DPD+ +R
Sbjct: 178 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 237
Query: 242 KFGYKIFSKKVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFK 301
K G + F ++ +AM L F ++ +L T + L +P +LR
Sbjct: 238 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVP-GETLRIY 296
Query: 302 IISSLSKIIKVS 313
+ L + +
Sbjct: 297 LRQELGNKLGIL 308
>d1t6t1_ c.136.1.1 (1:) Hypothetical protein aq_2086 {Aquifex
aeolicus [TaxId: 63363]}
Length = 108
Score = 71.5 bits (175), Expect = 5e-16
Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 13/117 (11%)
Query: 136 YGLFEAKNAIEKS--GYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHIKKILFYTNS 193
L E ++K+ V++ EG D LS+F + + G + +
Sbjct: 2 RNLSEWIKELKKASREAVILVEGKNDKKALSKFSIKNVIDLSGKRYA-DVVDMLEGKWEK 60
Query: 194 IIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSK 250
+I FD D G R ++ E+ + ++++K+ +
Sbjct: 61 VILLFDLDTHGERINQKMKELLSSQG----------FLVDENFRNFLKKWNIIHIEE 107
>d1nuia1 e.13.1.2 (A:64-255) Primase fragment of primase-helicase
protein {Bacteriophage T7 [TaxId: 10760]}
Length = 192
Score = 68.8 bits (167), Expect = 3e-14
Identities = 31/253 (12%), Positives = 66/253 (26%), Gaps = 70/253 (27%)
Query: 7 FYKI-QLKNSKEAINFLKKRGLNEEIILRFNLGYAPNEWNALNKVFLDYNNINTLASSGL 65
Y + S + L RG+++E + A
Sbjct: 2 TYNVWNFGESNGRYSALTARGISKETCQKAGYWIA------------------------- 36
Query: 66 VVDKIINKVNQSPVIEKYKRYDRFRGRIMFPIKNTDGQIIGFGGRLIKDSNEAKYINSPE 125
+ ++ +G I+ + +
Sbjct: 37 --------------------KVDGVMYQVADYRDQNGNIVSQK------------VRDKD 64
Query: 126 TPLFHKSNELYGLFEAKNAIEKSGYVLITEGYMDVIGLSQFGFLQTVAILGTACTSTHI- 184
+ K+ +++TEG +D++ + + + + S
Sbjct: 65 KNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKK 124
Query: 185 -----KKILFYTNSIIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSY 239
+ II FD D+AGR+A A +V ++ LP K D +
Sbjct: 125 TCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQVLP-----AGKVRVAVLPCK-DANEC 178
Query: 240 IRKFGYKIFSKKV 252
+ ++V
Sbjct: 179 HLNGHDREIMEQV 191
>d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 114
Score = 61.1 bits (148), Expect = 3e-12
Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 6/103 (5%)
Query: 145 IEKSGYVLITEGYMDVIGLSQFGFLQTVAI-LGTACTSTHIKKILFYTNS--IIFSFDGD 201
+ + V+I EG D ++ V + + ++++ + D D
Sbjct: 1 MRRVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADAD 60
Query: 202 QAGRRAARRALEV---CLLYATDDKIIKFLFLPDKYDPDSYIR 241
+AG + R+ + D + P + +R
Sbjct: 61 EAGEKLRRQFRRMFPEAEHLYIDRAYREVAAAPIWHLAQVLLR 103
>d1jida_ d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 27.5 bits (61), Expect = 1.6
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 69 KIINKVNQSPVIEKYKRYDR-------FRGRIMFPIKNTDGQII 105
+ + V + +EK K Y R +RGR+ +K DG +
Sbjct: 47 DVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLC 90
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 160
Score = 27.6 bits (60), Expect = 2.2
Identities = 16/93 (17%), Positives = 34/93 (36%)
Query: 194 IIFSFDGDQAGRRAARRALEVCLLYATDDKIIKFLFLPDKYDPDSYIRKFGYKIFSKKVL 253
I++ D + A + L A + ++ + + D + G +K V
Sbjct: 6 ILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVE 65
Query: 254 EAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIE 286
E + L+ L E N K++E + ++
Sbjct: 66 EFENELKNKLTEEAKNKMENIKKELEDVGFKVK 98
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
dehydrogenase, PP module {Thermus thermophilus [TaxId:
274]}
Length = 362
Score = 27.6 bits (60), Expect = 3.2
Identities = 8/107 (7%), Positives = 37/107 (34%), Gaps = 12/107 (11%)
Query: 335 KKNIQPICIEYQIMKLLISYPSLINEINSEDMIIFSKCSQNYVKMFFQLIDTIHIFKNDI 394
++ P +E ++ + +S D + + + D I F+ +
Sbjct: 250 RRGEGPSLVELRVYRY--------GPHSSADDDSRYRPKEEVAFWRKK--DPIPRFRRFL 299
Query: 395 DHSKFI--KYLKKINKNFESIIVKIQDNFEYSIEIAKKTLLDAIYKD 439
+ ++ + + + + + + E + + + + + ++ +
Sbjct: 300 EARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAE 346
>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId:
11034]}
Length = 152
Score = 26.8 bits (59), Expect = 3.5
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 94 MFPIKNTDGQIIGF----GGRLIKDSNEAKYINSPE 125
+F +KN DG +IG G+++K + I+ P
Sbjct: 3 LFDVKNEDGDVIGHALAMEGKVMKPLHVKGTIDHPV 38
>d1lnga_ d.201.1.1 (A:) SRP19 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 87
Score = 25.4 bits (56), Expect = 4.5
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 69 KIINKVNQSPVIEKYKRYDR----FRGRIMFPIKNTDGQIIGFGGRLIKDSN 116
K + K+ P I + KRY R G + K Q++ ++IK N
Sbjct: 36 KALKKLGLEPKIYRDKRYPRQHWEICGCVEVDYKGNKLQLLKEICKIIKGKN 87
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4
(Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 25.0 bits (55), Expect = 4.9
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 251 KVLEAMSLLQFFLEEIILNYNLKTIKDIEKSKYNIEYLFKIIPLSSSLRFKIISSLSKI 309
KV + LLQ LE+ + S+Y++++ ++ LS RF + + +K+
Sbjct: 16 KVTPSTVLLQV-LEDTCRRQDF------NPSEYDLKFQRTVLDLSLQWRFANLPNNAKL 67
>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Rhodospirillum rubrum [TaxId:
1085]}
Length = 320
Score = 26.7 bits (59), Expect = 5.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 199 DGDQAGRRAARRALEVC 215
DG AG R+ R+A +
Sbjct: 264 DGPVAGARSLRQAWQAW 280
>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}
Length = 283
Score = 26.7 bits (59), Expect = 6.1
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 199 DGDQAGRRAARRALEVCL 216
G +AG ++ R+A E
Sbjct: 245 MGPKAGAKSIRQAWEAIE 262
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.394
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,698,972
Number of extensions: 87361
Number of successful extensions: 366
Number of sequences better than 10.0: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 49
Length of query: 444
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 356
Effective length of database: 1,199,356
Effective search space: 426970736
Effective search space used: 426970736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)