BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15223
(2492 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure
With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure
With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure
With Trna(Ile) And Mupirocin
Length = 917
Score = 593 bits (1530), Expect = e-169, Method: Compositional matrix adjust.
Identities = 333/933 (35%), Positives = 510/933 (54%), Gaps = 56/933 (6%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G L +EP +KW + YH+ + + FILHDGPPYANG++H+GHA+NKILKD
Sbjct: 16 MRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKD 75
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK--LYGKNLSPIEIQNKARALAYEKIEQQ 1685
IV++ M GF A YVPG+D HG+PIE + K + K +S E + K + A E+IE Q
Sbjct: 76 FIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQ 135
Query: 1686 KMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAE 1745
K DF RLG+ G++++ Y T+ EA ++R FG + KG +Y G KPV W +S+LAE
Sbjct: 136 KKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAE 195
Query: 1746 AEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVH 1805
AEIEY K SIYV F+ + K + +IWT+TPWTIP+N A+ VH
Sbjct: 196 AEIEYHDKRSASIYVAFNVKDD---------KGVVDADAKFIIWTTTPWTIPSNVAITVH 246
Query: 1806 PEFDYALVHIKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSNID 1865
PE Y ++ + ++ + V L L + HP
Sbjct: 247 PELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPF---- 302
Query: 1866 INYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFIS 1925
+R S + GD++T D+GTG VH+AP +G +D+++ ++ + +I+P+ D G F
Sbjct: 303 --LDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELP---VISPIDDKGVFTE 357
Query: 1926 TLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMD 1985
F GM KA+K + L + L ++ HSY H WR K P+I+R T QWF ++
Sbjct: 358 EGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASIS 417
Query: 1986 KIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHK 2045
K+ R+ + AI F +WGK R+ +M+ +R +W ISRQR WGVP+ F +
Sbjct: 418 KV--------RQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVF-YA 468
Query: 2046 KSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFL-------GDDAVNYKKSNDTLDV 2098
++G++ T E + +A +G IW + K+ L G + K D +DV
Sbjct: 469 ENGEI-IMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDV 527
Query: 2099 WFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH 2158
WFDSG +H+ V+ + +L FPAD+YLEGSDQ+RGWF+SS+ TS+ +PYK LL+H
Sbjct: 528 WFDSGSSHRGVLET--RPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSH 585
Query: 2159 GFVVDXXXXXXXXXXXNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETY 2218
GFV+D N+I P ++ GA+I RLWV+STDY D+ IS+EIL + + Y
Sbjct: 586 GFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDY 645
Query: 2219 RRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIV 2278
R+IRNTLRF+L N +DFNP+ + I S+++E+D+Y + + +++Y +++ I
Sbjct: 646 RKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIY 705
Query: 2279 SKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSE 2338
++Q + + +L +FYLD KD LY +++SH RRS QT ++ I + +L++PIL T+E
Sbjct: 706 QEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAE 765
Query: 2339 EAWSIFSDKNFYIESGETIFTQLHY-KLPKVYN-SXXXXXXXXXXXXXRSKVMQKLEKIR 2396
E WS + +H +PKV R V + LE R
Sbjct: 766 EVWS---------HTPHVKEESVHLADMPKVVEVDQALLDKWRTFMNLRDDVNRALETAR 816
Query: 2397 STGIIGSSLQAEIILKINKL--DFEILNEFGEELKFFLLTSSVSLFQIKNLSEEC----I 2450
+ +IG SL+A++ + N E L F + F+++ + ++ + + I
Sbjct: 817 NEKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDI 876
Query: 2451 IIKPSIYKKCNRCWHYQADVGERDDYPDLCNRC 2483
+I+ + +KC RCW+Y D+G D+ LC RC
Sbjct: 877 VIEHADGEKCERCWNYSEDLGAVDELTHLCPRC 909
Score = 580 bits (1494), Expect = e-165, Method: Compositional matrix adjust.
Identities = 325/899 (36%), Positives = 495/899 (55%), Gaps = 56/899 (6%)
Query: 452 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK-- 509
FILHDGPPYANG++H+GHA+NKILKD IV++ M GF A YVPG+D HG+PIE + K
Sbjct: 50 FILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKG 109
Query: 510 LYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGI 569
+ K +S E + K + A E+IE QK DF RLG+ G++++ Y T+ EA ++R FG
Sbjct: 110 VDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGE 169
Query: 570 IFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNL 629
+ KG +Y G KPV W +S+LAEAEIEY K SIYV F+ + K +
Sbjct: 170 MADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDD---------KGV 220
Query: 630 PSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLXXXXX 689
+IWT+TPWTIP+N A+ VHPE Y ++ + ++ + V L
Sbjct: 221 VDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKA 280
Query: 690 XXXXXXXXXXXXLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIED 749
L + HP +R S + GD++T D+GTG VH+AP +G +D
Sbjct: 281 SIKLEKEYTGKELEWVVAQHPF------LDRESLVINGDHVTTDAGTGCVHTAPGHGEDD 334
Query: 750 FLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFE 809
+++ ++ + +I+P+ D G F F GM KA+K + L + L ++
Sbjct: 335 YIVGQQYELP---VISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFIT 391
Query: 810 HSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKS 869
HSY H WR K P+I+R T QWF ++ K+ R+ + AI F +WGK R+ +
Sbjct: 392 HSYPHDWRTKKPVIFRATPQWFASISKV--------RQDILDAIENTNFKVNWGKTRIYN 443
Query: 870 MILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIK 929
M+ +R +W ISRQR WGVP+ F + ++G++ T E + +A +G IW + K
Sbjct: 444 MVRDRGEWVISRQRVWGVPLPVF-YAENGEI-IMTKETVNHVADLFAEHGSNIWFEREAK 501
Query: 930 EFL-------GDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQH 982
+ L G + K D +DVWFDSG +H+ V+ + +L FPAD+YLEGSDQ+
Sbjct: 502 DLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLET--RPELSFPADMYLEGSDQY 559
Query: 983 RGWFHSSLLTSIILNKSAPYKALLTHGFVVDXXXXXXXXXXXNIIKPQKLCNLFGAEILR 1042
RGWF+SS+ TS+ +PYK LL+HGFV+D N+I P ++ GA+I R
Sbjct: 560 RGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIAR 619
Query: 1043 LWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDK 1102
LWV+STDY D+ IS+EIL + + YR+IRNTLRF+L N +DFNP+ + I S+++E+D+
Sbjct: 620 LWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDR 679
Query: 1103 YAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARR 1162
Y + + +++Y +++ I ++Q + + +L +FYLD KD LY +++SH RR
Sbjct: 680 YLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRR 739
Query: 1163 SAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHY-KLPKVYN- 1220
S QT ++ I + +L++PIL T+EE WS + +H +PKV
Sbjct: 740 SMQTVLYQILVDMTKLLAPILVHTAEEVWS---------HTPHVKEESVHLADMPKVVEV 790
Query: 1221 SXXXXXXXXXXXXXRSKVMQKLEKIRSTGIIGSSLQAEIILKINKL--DFEILNEFGEEL 1278
R V + LE R+ +IG SL+A++ + N E L F
Sbjct: 791 DQALLDKWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNASEFLTSFDALH 850
Query: 1279 KFFLLTSSVSLFQIKNLSEEC----IIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRC 1333
+ F+++ + ++ + + I+I+ + +KC RCW+Y D+G D+ LC RC
Sbjct: 851 QLFIVSQVKVVDKLDDQATAYEHGDIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRC 909
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 258 bits (660), Expect = 2e-68, Method: Composition-based stats.
Identities = 207/789 (26%), Positives = 348/789 (44%), Gaps = 73/789 (9%)
Query: 1583 WQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQY 1642
W+ +KI+ + + P++ +++GPP ANG H+GHA + KD+ ++ M G+ A
Sbjct: 21 WKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPR 80
Query: 1643 VPGYDCHGMPIEIQIEKLYG-KNLSPIEIQNKAR--------ALAYEKIEQQKMDFMRLG 1693
G+D HG+P+E+++EK G K+ IE R YEK + + R+
Sbjct: 81 RAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTE--RIA 138
Query: 1694 ILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE--YK 1751
+ +++Y T++ + + +F +G +Y K V +C C + L+ E+ YK
Sbjct: 139 YWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYK 198
Query: 1752 KKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYA 1811
+ D S+YV F EP+K L K ++IWT+TPWT+P N A VHPE+ YA
Sbjct: 199 EIQDPSVYVRFPLKEPKK---------LGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYA 249
Query: 1812 LVHIKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSN-IDINYNR 1870
+ ++ LIL L + L L + + P ++ Y
Sbjct: 250 AFQVGDEA---LILEEGLGRKLL---GEGTQVLKTFPGKALEGLPYTPPYPQALEKGYF- 302
Query: 1871 LSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLF 1930
+ L DY++ + GTGIVH APA+G ED + + ++ V ++G + + F
Sbjct: 303 ---VVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLP---LLKTVDEEGKLL--VEPF 354
Query: 1931 GGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKN 1990
G+ +A++ I L+ LF E + HSY HCWR TP++Y T WFI
Sbjct: 355 KGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFI-------- 406
Query: 1991 EKKSLRESAITAINKIKFFPSWGKD-RLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGK 2049
+ ++ I +I + P K+ R + N DW +SR R+WG P+ ++ + GK
Sbjct: 407 KNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGK 466
Query: 2050 LHP--KTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSG---- 2103
EL K + +D E ++ +DVW+DSG
Sbjct: 467 EEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPF 526
Query: 2104 ------ITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLT 2157
H+ V R S FPAD EG DQ RGWF+S ++L S +K ++
Sbjct: 527 ASLHYPFEHEEVFRES------FPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVIC 580
Query: 2158 HGFVVDXXXXXXXXXXXNIIKPQKLCNLFGAEILRLWV-ASTDYSKDLSISNEILNRVVE 2216
HG ++D N++ P + FGA+ LR ++ S D ++ V
Sbjct: 581 HGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVR 640
Query: 2217 TY-RRIRNTLRFLLANTSDFNPNI-NIIKISDMVEIDKYAIINITNLQKEILSHYRMYEF 2274
Y + N F + + P++ N E+D++ + + +L + + Y+
Sbjct: 641 DYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDP 700
Query: 2275 HMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHA--RRSAQTSIWHINQSLLRLISPI 2332
L+ + EDL +Y+ + R + KN A R +A +++ + L +P
Sbjct: 701 TTSARALRDFVVEDLSQWYVRRNRRRFW---KNEDALDREAAYATLYEALVLVATLAAPF 757
Query: 2333 LSFTSEEAW 2341
F +E W
Sbjct: 758 TPFLAEVLW 766
Score = 253 bits (645), Expect = 1e-66, Method: Composition-based stats.
Identities = 204/772 (26%), Positives = 340/772 (44%), Gaps = 73/772 (9%)
Query: 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK 509
P++ +++GPP ANG H+GHA + KD+ ++ M G+ A G+D HG+P+E+++EK
Sbjct: 38 PRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEK 97
Query: 510 LYG-KNLSPIEIQNKAR--------ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNE 560
G K+ IE R YEK + + R+ + +++Y T++
Sbjct: 98 KLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTE--RIAYWVDLEDAYATLEPTYI 155
Query: 561 ANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE--YKKKYDFSIYVGFSFSEPE 618
+ + +F +G +Y K V +C C + L+ E+ YK+ D S+YV F EP+
Sbjct: 156 ESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVYVRFPLKEPK 215
Query: 619 KIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFN 678
K L K ++IWT+TPWT+P N A VHPE+ YA + ++ LIL
Sbjct: 216 K---------LGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEA---LILEEG 263
Query: 679 LVKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSN-IDINYNRLSPIYLGDYITVDSGTG 737
L + L L + + P ++ Y + L DY++ + GTG
Sbjct: 264 LGRKLL---GEGTQVLKTFPGKALEGLPYTPPYPQALEKGYF----VVLADYVSQEDGTG 316
Query: 738 IVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLK 797
IVH APA+G ED + + ++ V ++G + + F G+ +A++ I L+
Sbjct: 317 IVHQAPAFGAEDLETARVYGLP---LLKTVDEEGKLL--VEPFKGLYFREANRAILRDLR 371
Query: 798 KSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIK 857
LF E + HSY HCWR TP++Y T WFI + ++ I +I
Sbjct: 372 GRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFI--------KNTLFKDELIRNNQEIH 423
Query: 858 FFPSWGKD-RLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHP--KTLELIELIAKK 914
+ P K+ R + N DW +SR R+WG P+ ++ + GK EL K
Sbjct: 424 WVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKP 483
Query: 915 IELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSG----------ITHQTVIRGSH 964
+ +D E ++ +DVW+DSG H+ V R S
Sbjct: 484 LPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRES- 542
Query: 965 KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDXXXXXXXXXXX 1024
FPAD EG DQ RGWF+S ++L S +K ++ HG ++D
Sbjct: 543 -----FPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKG 597
Query: 1025 NIIKPQKLCNLFGAEILRLWV-ASTDYSKDLSISNEILNRVVETY-RRIRNTLRFLLANT 1082
N++ P + FGA+ LR ++ S D ++ V Y + N F +
Sbjct: 598 NVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYA 657
Query: 1083 SDFNPNI-NIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGS 1141
+ P++ N E+D++ + + +L + + Y+ L+ + EDL
Sbjct: 658 NLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQ 717
Query: 1142 FYLDILKDRLYTTKKNSHA--RRSAQTSIWHINQSLLRLISPILSFTSEEAW 1191
+Y+ + R + KN A R +A +++ + L +P F +E W
Sbjct: 718 WYVRRNRRRFW---KNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLW 766
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 174/789 (22%), Positives = 308/789 (39%), Gaps = 119/789 (15%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
EP W +KW + + +P F++ PP G +H+GHA++ L+D ++++ M
Sbjct: 13 EPKWAEKWAKNPF---VANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRM 69
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMD------- 1688
GF+A ++PG D G+ ++ +E+L K + + L E++ Q K +
Sbjct: 70 RGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFL--ERVWQWKEESGGTILK 127
Query: 1689 -FMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
RLG +W TMD AF + +G Y + VNWC C++ L++ E
Sbjct: 128 QLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLE 187
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+E +EP K ++ L+ G G+I I T P T+ A+QA+ VHPE
Sbjct: 188 VE---------------TEPTPGK-LYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPE 231
Query: 1808 FDYALVHIKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSNIDIN 1867
D H+ L K PL+ + I
Sbjct: 232 -DERYRHL------------------------------------LGKRARI-PLTEVWI- 252
Query: 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTL 1927
PI + D GTG + PA+ D+ I ++ +K +IN ++ +
Sbjct: 253 -----PILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVIN--LEGRMEGERV 305
Query: 1928 P-LFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 1986
P G+ ++A + +++ L E + + C R TPI Y QW++ M
Sbjct: 306 PEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRP 365
Query: 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPI-AFFIHK 2045
+ + K LR I F P K + N DW ISRQ WG I A++
Sbjct: 366 LAEEVLKGLRR------GDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCED 419
Query: 2046 KSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGIT 2105
P+ +E D + K+ D D WF S +
Sbjct: 420 CQAVNVPRPERYLE-----------------DPTSCEACGSPRLKRDEDVFDTWFSSALW 462
Query: 2106 HQTVIRGSHKKQ---LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVV 2162
+ + + + +P D+ + G D W ++ P+K +L HG V+
Sbjct: 463 PLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVL 522
Query: 2163 DXXXXXXXXXXXNIIKPQKLCNLFGAEILR---LWVASTDYSKDLSISNEILNRVVETYR 2219
D N+I P ++ +GA+ LR +++A+ +D+ + L
Sbjct: 523 DEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATG--GQDIRLDLRWLEMARNFAN 580
Query: 2220 RIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVS 2279
++ N RF+L + F + ++ D++ ++ +EI + Y +
Sbjct: 581 KLYNAARFVLLSREGFQAKEDTPTLA-----DRFMRSRLSRGVEEITALYEALDLAQAAR 635
Query: 2280 KLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEE 2339
++ + +YL+ K L N+H R+ + + LL+L+ P++ F + E
Sbjct: 636 EVYELVWSEFCDWYLEAAKPALKAG--NAHTLRTLE----EVLAVLLKLLHPMMPFLTSE 689
Query: 2340 AWSIFSDKN 2348
+ + K
Sbjct: 690 LYQALTGKE 698
Score = 169 bits (429), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 169/767 (22%), Positives = 300/767 (39%), Gaps = 116/767 (15%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
+P F++ PP G +H+GHA++ L+D ++++ M GF+A ++PG D G+ ++ +
Sbjct: 32 GKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVV 91
Query: 508 EKLYGKNLSPIEIQNKARALAYEKIEQQKMD--------FMRLGILGEWDNSYKTMDFLN 559
E+L K + + L E++ Q K + RLG +W TMD
Sbjct: 92 ERLLLKEGKTRHDLGREKFL--ERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKR 149
Query: 560 EANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEK 619
AF + +G Y + VNWC C++ L++ E+E +EP
Sbjct: 150 SRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVE---------------TEPTP 194
Query: 620 IKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNL 679
K ++ L+ G G+I I T P T+ A+QA+ VHPE D H+
Sbjct: 195 GK-LYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPE-DERYRHL-------------- 238
Query: 680 VKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIV 739
L K PL+ + I PI + D GTG +
Sbjct: 239 ----------------------LGKRARI-PLTEVWI------PILADPAVEKDFGTGAL 269
Query: 740 HSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLP-LFGGMSIWKASKLICSYLKK 798
PA+ D+ I ++ +K +IN ++ +P G+ ++A + ++
Sbjct: 270 KVTPAHDPLDYEIGERHGLKPVSVIN--LEGRMEGERVPEALRGLDRFEARRKAVELFRE 327
Query: 799 SKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKF 858
+ L E + + C R TPI Y QW++ M + + K LR I F
Sbjct: 328 AGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRR------GDIAF 381
Query: 859 FPSWGKDRLKSMILNRPDWTISRQRHWGVPI-AFFIHKKSGKLHPKTLELIELIAKKIEL 917
P K + N DW ISRQ WG I A++ P+ +E
Sbjct: 382 VPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLE-------- 433
Query: 918 NGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQ---LIFPADL 974
D + K+ D D WF S + + + + + +P D+
Sbjct: 434 ---------DPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDV 484
Query: 975 YLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDXXXXXXXXXXXNIIKPQKLCN 1034
+ G D W ++ P+K +L HG V+D N+I P ++
Sbjct: 485 LVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVE 544
Query: 1035 LFGAEILR---LWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINI 1091
+GA+ LR +++A+ +D+ + L ++ N RF+L + F +
Sbjct: 545 RYGADALRFALIYLATG--GQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAKEDT 602
Query: 1092 IKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRL 1151
++ D++ ++ +EI + Y + ++ + +YL+ K L
Sbjct: 603 PTLA-----DRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPAL 657
Query: 1152 YTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKN 1198
N+H R+ + + LL+L+ P++ F + E + + K
Sbjct: 658 KAG--NAHTLRTLE----EVLAVLLKLLHPMMPFLTSELYQALTGKE 698
>pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
pdb|1Z3A|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
Length = 168
Score = 144 bits (362), Expect = 7e-34, Method: Composition-based stats.
Identities = 69/140 (49%), Positives = 92/140 (65%), Gaps = 1/140 (0%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
AK A EVPVGAVLV NN VI G+N+ I R+DPTAHAEI+ALR ++ NYR +
Sbjct: 20 AKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLI-D 78
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
+YVTLEPC MCAGA+IH R+G +++G KTGA GS++++ +NH +T G++
Sbjct: 79 ATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGIL 138
Query: 177 QKQCEKLLKSFFIKRRNFVK 196
+C LL FF RR +K
Sbjct: 139 ADECAALLSDFFRMRRQEIK 158
Score = 78.6 bits (192), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 1338 FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEK 1397
EPC MCAGA+IH R+G +++G KTGA GS++++ +NH +T G++ +C
Sbjct: 85 LEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAA 144
Query: 1398 LLKSFFIKRRNFVKNKIQA 1416
LL FF RR +K + +A
Sbjct: 145 LLSDFFRMRRQEIKAQKKA 163
>pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase
From Salmonella Enterica
Length = 183
Score = 142 bits (358), Expect = 2e-33, Method: Composition-based stats.
Identities = 69/140 (49%), Positives = 92/140 (65%), Gaps = 1/140 (0%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
AK A EVPVGAVLV N+ VI G+N+ I R+DPTAHAEI+ALR +L NYR +
Sbjct: 30 AKRAWDEREVPVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLL-D 88
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
+YVTLEPC MCAGA++H R+G +++G KTGA GS+I++ +NH + GV+
Sbjct: 89 TTLYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHPGMNHRVEIIEGVL 148
Query: 177 QKQCEKLLKSFFIKRRNFVK 196
+ +C LL FF RR +K
Sbjct: 149 RDECATLLSDFFRMRRQEIK 168
Score = 77.4 bits (189), Expect = 9e-14, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 1338 FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEK 1397
EPC MCAGA++H R+G +++G KTGA GS+I++ +NH + GV++ +C
Sbjct: 95 LEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHPGMNHRVEIIEGVLRDECAT 154
Query: 1398 LLKSFFIKRRNFVK 1411
LL FF RR +K
Sbjct: 155 LLSDFFRMRRQEIK 168
>pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|B Chain B, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|C Chain C, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|D Chain D, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
Length = 159
Score = 123 bits (309), Expect = 1e-27, Method: Composition-based stats.
Identities = 61/142 (42%), Positives = 89/142 (62%), Gaps = 4/142 (2%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
AK A GEVP+GA++ K++ VI+ +N + T PTAHAE IA+ A+K+L ++R +
Sbjct: 18 AKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRL-EG 76
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
+YVTLEPC MCAG I+ R+ ++YG K G GS++NL Q+ NH I+ GV+
Sbjct: 77 CTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVL 136
Query: 177 QKQCEKLLKSFFIKRRNFVKNK 198
++ C LL +FF +N NK
Sbjct: 137 KEACSTLLTTFF---KNLRANK 155
Score = 71.2 bits (173), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1338 FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEK 1397
EPC MCAG I+ R+ ++YG K G GS++NL Q+ NH I+ GV+++ C
Sbjct: 83 LEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACST 142
Query: 1398 LLKSFFIKRRNFVKNK 1413
LL +FF +N NK
Sbjct: 143 LLTTFF---KNLRANK 155
>pdb|1VHY|A Chain A, Crystal Structure Of Haemophilus Influenzae Protein
Hi0303, Pfam Duf558
pdb|1VHY|B Chain B, Crystal Structure Of Haemophilus Influenzae Protein
Hi0303, Pfam Duf558
Length = 257
Score = 99.4 bits (246), Expect = 2e-20, Method: Composition-based stats.
Identities = 73/247 (29%), Positives = 112/247 (45%), Gaps = 7/247 (2%)
Query: 201 NIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYXXXXXXXXX 259
++++ R Y+PI YL ++ NH+ VLR + LF+G +
Sbjct: 2 SLRIPRIYHPISLENQTQCYLSEDAANHVARVLRXTEGEQLELFDG--SNHIYPAKIIES 59
Query: 260 XXXXXXXXFLFREI---ELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCII 316
L RE+ E I L Q + + + I+KSVELGV +I P+ + RC +
Sbjct: 60 NKKSVKVEILGRELADKESHLKIHLGQVISRGERXEFTIQKSVELGVNVITPLWSERCGV 119
Query: 317 QLXXXXXXXXXXXXXXXXXSATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRK 376
+L +A EQ GRNI+P + P +W ++ L PR
Sbjct: 120 KLDAERXDKKIQQWQKIAIAACEQCGRNIVPEIRPLXKLQDWCAENDGALKLNLHPRAHY 179
Query: 377 KLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAIL 436
+ + V LLIG EGG + +E + G + LGKR+LRTETASL A++ L
Sbjct: 180 SIKTLPTIPA-GGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISAL 238
Query: 437 NGVWGEI 443
+G++
Sbjct: 239 QICFGDL 245
Score = 86.3 bits (212), Expect = 2e-16, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Query: 1415 QALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLXXXXXXXXXXXXXXXXXSATEQSG 1474
Q + + + I+KSVELGV +I P+ + RC ++L +A EQ G
Sbjct: 86 QVISRGERXEFTIQKSVELGVNVITPLWSERCGVKLDAERXDKKIQQWQKIAIAACEQCG 145
Query: 1475 RNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTE 1534
RNI+P + P +W ++ L PR + + V LLIG EGG +
Sbjct: 146 RNIVPEIRPLXKLQDWCAENDGALKLNLHPRAHYSIKTLPTIPA-GGVRLLIGSEGGLSA 204
Query: 1535 KEENLAYECGVIILSLGKRILRTETASLVALAIL 1568
+E + G + LGKR+LRTETASL A++ L
Sbjct: 205 QEIAQTEQQGFTEILLGKRVLRTETASLAAISAL 238
>pdb|1NXZ|A Chain A, X-Ray Crystal Structure Of Protein Yggj_haein Of
Haemophilus Influenzae. Northeast Structural Genomics
Consortium Target Ir73.
pdb|1NXZ|B Chain B, X-Ray Crystal Structure Of Protein Yggj_haein Of
Haemophilus Influenzae. Northeast Structural Genomics
Consortium Target Ir73
Length = 246
Score = 98.6 bits (244), Expect = 4e-20, Method: Composition-based stats.
Identities = 73/245 (29%), Positives = 110/245 (44%), Gaps = 7/245 (2%)
Query: 203 KMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYXXXXXXXXXXX 261
++ R Y+PI YL ++ NH+ VLR + LF+G +
Sbjct: 1 RIPRIYHPISLENQTQCYLSEDAANHVARVLRXTEGEQLELFDG--SNHIYPAKIIESNK 58
Query: 262 XXXXXXFLFREI---ELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQL 318
L RE+ E I L Q + + + I+KSVELGV +I P+ + RC ++L
Sbjct: 59 KSVKVEILGRELADKESHLKIHLGQVISRGERXEFTIQKSVELGVNVITPLWSERCGVKL 118
Query: 319 XXXXXXXXXXXXXXXXXSATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKL 378
+A EQ GRNI+P + P +W ++ L PR +
Sbjct: 119 DAERXDKKIQQWQKIAIAACEQCGRNIVPEIRPLXKLQDWCAENDGALKLNLHPRAHYSI 178
Query: 379 SCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNG 438
+ V LLIG EGG + +E + G + LGKR+LRTETASL A++ L
Sbjct: 179 KTLPTIPA-GGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQI 237
Query: 439 VWGEI 443
+G++
Sbjct: 238 CFGDL 242
Score = 86.3 bits (212), Expect = 2e-16, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Query: 1415 QALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLXXXXXXXXXXXXXXXXXSATEQSG 1474
Q + + + I+KSVELGV +I P+ + RC ++L +A EQ G
Sbjct: 83 QVISRGERXEFTIQKSVELGVNVITPLWSERCGVKLDAERXDKKIQQWQKIAIAACEQCG 142
Query: 1475 RNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTE 1534
RNI+P + P +W ++ L PR + + V LLIG EGG +
Sbjct: 143 RNIVPEIRPLXKLQDWCAENDGALKLNLHPRAHYSIKTLPTIPA-GGVRLLIGSEGGLSA 201
Query: 1535 KEENLAYECGVIILSLGKRILRTETASLVALAIL 1568
+E + G + LGKR+LRTETASL A++ L
Sbjct: 202 QEIAQTEQQGFTEILLGKRVLRTETASLAAISAL 235
>pdb|4E8B|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsme From
E.Coli
Length = 251
Score = 96.7 bits (239), Expect = 1e-19, Method: Composition-based stats.
Identities = 70/250 (28%), Positives = 109/250 (43%), Gaps = 16/250 (6%)
Query: 202 IKMLRFYYPIPFIIGQYLYLPDNIVNHLN-VLRVKYKNTIILFNG----FGGEYXXXXXX 256
+++ R Y+P P ++ L ++ NH+ VLR+ + LF+G F E
Sbjct: 1 MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKK 60
Query: 257 XXXXXXXXXXXFLFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCII 316
+ E P I L Q + K + I+KS+ELGV +I P+ + RC +
Sbjct: 61 SVEVKVLEGQ---IDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGV 117
Query: 317 QLXXXXXXXXXXXXXXXXXSATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRK 376
+L +A EQ GRN +P + P + W + ++ L PR
Sbjct: 118 KLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASN 177
Query: 377 KLSCWANNQSPQEVE---LLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVAL 433
+ N P VE LLIGPEGG + E + + LG R+LRTET +L A+
Sbjct: 178 SI-----NTLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAI 232
Query: 434 AILNGVWGEI 443
L +G++
Sbjct: 233 TALQVRFGDL 242
Score = 83.6 bits (205), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 73/157 (46%), Gaps = 8/157 (5%)
Query: 1415 QALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLXXXXXXXXXXXXXXXXXSATEQSG 1474
Q + K + I+KS+ELGV +I P+ + RC ++L +A EQ G
Sbjct: 84 QVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCG 143
Query: 1475 RNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVE---LLIGPEGG 1531
RN +P + P + W + ++ L PR + N P VE LLIGPEGG
Sbjct: 144 RNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSI-----NTLPLPVERVRLLIGPEGG 198
Query: 1532 FTEKEENLAYECGVIILSLGKRILRTETASLVALAIL 1568
+ E + + LG R+LRTET +L A+ L
Sbjct: 199 LSADEIAMTARYQFTDILLGPRVLRTETTALTAITAL 235
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|C Chain C, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|D Chain D, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
Length = 171
Score = 96.3 bits (238), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/137 (39%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
AK A GEVPVGA++VK +IS +N DPTAHAE++A++ A + LN ++ +
Sbjct: 34 AKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNT-KYLEG 92
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
++YVTLEPC MC+ A++ R+ ++I+ K G S+ N+ E LNH +
Sbjct: 93 CELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPL 152
Query: 177 QKQCEKLLKSFFIKRRN 193
++ E LL FF K RN
Sbjct: 153 EEASE-LLSEFFKKLRN 168
Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 1338 FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEK 1397
EPC MC+ A++ R+ ++I+ K G S+ N+ E LNH +++ E
Sbjct: 99 LEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPLEEASE- 157
Query: 1398 LLKSFFIKRRN 1408
LL FF K RN
Sbjct: 158 LLSEFFKKLRN 168
>pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine
Deaminase From Streptococcus Pyogenes
Length = 179
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 43 IETDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALR 102
+E + ++ ++ +L E+P+G V+VK+ +I G+N + N HAE++A+
Sbjct: 13 LEEQTYFMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAIN 72
Query: 103 MASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQE 162
A+ N+R + ++VT+EPC MC+GAI R+ +IYG + K G S+ + +
Sbjct: 73 EANAHEGNWRLL-DTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTD 131
Query: 163 KKLNHHTILTGGVMQKQCEKLLKSFFIKRR 192
++LNH + G++ C ++++FF + R
Sbjct: 132 ERLNHRVQVERGLLAADCANIMQTFFRQGR 161
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
EPC MC+GAI R+ +IYG + K G S+ + +++LNH + G++ C +
Sbjct: 93 EPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANI 152
Query: 1399 LKSFFIKRR 1407
+++FF + R
Sbjct: 153 MQTFFRQGR 161
>pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By
Trna:a34 Deaminases At The Wobble Position Of Transfer
Rna
pdb|2A8N|B Chain B, Biochemical And Structural Studies Of A-To-I Editing By
Trna:a34 Deaminases At The Wobble Position Of Transfer
Rna
Length = 144
Score = 88.2 bits (217), Expect = 5e-17, Method: Composition-based stats.
Identities = 54/140 (38%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 55 HRAKLALI----AGE---VPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKL 107
H +LAL+ AGE VP+GAVLV + VI+ N+ ND TAHAEI +RMA +
Sbjct: 6 HFMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEA 65
Query: 108 LNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNH 167
L R +YVTLEPC MCA AI R+ + YG K GA S + F + +H
Sbjct: 66 LGQERLP-GADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHH 124
Query: 168 HTILTGGVMQKQCEKLLKSF 187
+ G+ + + ++L+ F
Sbjct: 125 APDVYSGLAESESAEILRQF 144
Score = 44.3 bits (103), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 1338 FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEK 1397
EPC MCA AI R+ + YG K GA S + F + +H + G+ + + +
Sbjct: 80 LEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLAESESAE 139
Query: 1398 LLKSF 1402
+L+ F
Sbjct: 140 ILRQF 144
>pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
pdb|1WK8|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
Length = 194
Score = 86.3 bits (212), Expect = 2e-16, Method: Composition-based stats.
Identities = 65/216 (30%), Positives = 100/216 (46%), Gaps = 25/216 (11%)
Query: 600 YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFD 659
YK+ D S+YV F EP+K L K ++IWT+TPWT+P N A VHPE+
Sbjct: 3 YKEIQDPSVYVRFPLKEPKK---------LGLEKASLLIWTTTPWTLPGNVAAAVHPEYT 53
Query: 660 YALVHIKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSN-IDINY 718
YA + ++ LIL L + L L + + P ++ Y
Sbjct: 54 YAAFQVGDEA---LILEEGLGRKLL---GEGTPVLKTFPGKALEGLPYTPPYPQALEKGY 107
Query: 719 NRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLP 778
+ L DY++ + GTGIVH APA+G ED + + ++ V ++G + +
Sbjct: 108 F----VVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLP---LLKTVDEEGKLL--VE 158
Query: 779 LFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMH 814
F G+ +A++ I L+ LF E + HSY H
Sbjct: 159 PFKGLYFREANRAILRDLRGRGLLFKEESYLHSYPH 194
Score = 86.3 bits (212), Expect = 2e-16, Method: Composition-based stats.
Identities = 65/216 (30%), Positives = 100/216 (46%), Gaps = 25/216 (11%)
Query: 1750 YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFD 1809
YK+ D S+YV F EP+K L K ++IWT+TPWT+P N A VHPE+
Sbjct: 3 YKEIQDPSVYVRFPLKEPKK---------LGLEKASLLIWTTTPWTLPGNVAAAVHPEYT 53
Query: 1810 YALVHIKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSN-IDINY 1868
YA + ++ LIL L + L L + + P ++ Y
Sbjct: 54 YAAFQVGDEA---LILEEGLGRKLL---GEGTPVLKTFPGKALEGLPYTPPYPQALEKGY 107
Query: 1869 NRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLP 1928
+ L DY++ + GTGIVH APA+G ED + + ++ V ++G + +
Sbjct: 108 F----VVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLP---LLKTVDEEGKLL--VE 158
Query: 1929 LFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMH 1964
F G+ +A++ I L+ LF E + HSY H
Sbjct: 159 PFKGLYFREANRAILRDLRGRGLLFKEESYLHSYPH 194
>pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNY|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Post-Transfer Editing Substrate Analogue, Val-2aa
Length = 186
Score = 78.2 bits (191), Expect = 6e-14, Method: Composition-based stats.
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 25/208 (12%)
Query: 605 DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVH 664
D S+YV F EP+K L K ++IWT+TPWT+P N A VHPE+ YA
Sbjct: 3 DPSVYVRFPLKEPKK---------LGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQ 53
Query: 665 IKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSN-IDINYNRLSP 723
+ ++ LIL L + L L + + P ++ Y
Sbjct: 54 VGDEA---LILEEGLGRKLL---GEGTPVLKTFPGKALEGLPYTPPYPQALEKGYF---- 103
Query: 724 IYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGM 783
+ L DY++ + GTGIVH APA+G ED + + ++ V ++G + + F G+
Sbjct: 104 VVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLP---LLKTVDEEGKLL--VEPFKGL 158
Query: 784 SIWKASKLICSYLKKSKTLFNIEMFEHS 811
+A++ I L+ LF E + HS
Sbjct: 159 YFREANRAILRDLRGRGLLFKEESYLHS 186
Score = 78.2 bits (191), Expect = 6e-14, Method: Composition-based stats.
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 25/208 (12%)
Query: 1755 DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVH 1814
D S+YV F EP+K L K ++IWT+TPWT+P N A VHPE+ YA
Sbjct: 3 DPSVYVRFPLKEPKK---------LGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQ 53
Query: 1815 IKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSN-IDINYNRLSP 1873
+ ++ LIL L + L L + + P ++ Y
Sbjct: 54 VGDEA---LILEEGLGRKLL---GEGTPVLKTFPGKALEGLPYTPPYPQALEKGYF---- 103
Query: 1874 IYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGM 1933
+ L DY++ + GTGIVH APA+G ED + + ++ V ++G + + F G+
Sbjct: 104 VVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLP---LLKTVDEEGKLL--VEPFKGL 158
Query: 1934 SIWKASKLICSYLKKSKTLFNIEMFEHS 1961
+A++ I L+ LF E + HS
Sbjct: 159 YFREANRAILRDLRGRGLLFKEESYLHS 186
>pdb|3DH1|A Chain A, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
pdb|3DH1|B Chain B, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
pdb|3DH1|C Chain C, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
pdb|3DH1|D Chain D, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
Length = 189
Score = 75.5 bits (184), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 76/135 (56%), Gaps = 11/135 (8%)
Query: 33 MGSISLKNMLIETDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDP 92
+G+ +L +E ++ H AK AL EVPVG ++V NN V+ G N+ +
Sbjct: 13 LGTENLYFQSMEETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNA 72
Query: 93 TAHAEIIALRMASKLLNNYRFS--------KNYKIYVTLEPCAMCAGAIIHVRLGEIIYG 144
T HAE++A+ ++L+ R S ++ +YVT+EPC MCA A+ +++ ++YG
Sbjct: 73 TRHAEMVAI---DQVLDWCRQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYG 129
Query: 145 TPSFKTGACGSIINL 159
+ + G CGS++N+
Sbjct: 130 CQNERFGGCGSVLNI 144
Score = 40.0 bits (92), Expect = 0.017, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTG-------GVM 1391
EPC MCA A+ +++ ++YG + + G CGS++N+ N TG G
Sbjct: 109 EPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPN-----TGRPFQCIPGYR 163
Query: 1392 QKQCEKLLKSFFIKRR-NFVKNKIQ 1415
++ ++LK+F+ + N K+K++
Sbjct: 164 AEEAVEMLKTFYKQENPNAPKSKVR 188
>pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
pdb|1UE0|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
Length = 182
Score = 73.9 bits (180), Expect = 1e-12, Method: Composition-based stats.
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 25/203 (12%)
Query: 605 DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVH 664
D S+YV F EP+K L K ++IWT+TPWT+P N A VHPE+ YA
Sbjct: 3 DPSVYVRFPLKEPKK---------LGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQ 53
Query: 665 IKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSN-IDINYNRLSP 723
+ ++ LIL L + L L + + P ++ Y
Sbjct: 54 VGDEA---LILEEGLGRKLL---GEGTQVLKTFPGKALEGLPYTPPYPQALEKGYF---- 103
Query: 724 IYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGM 783
+ L DY++ + GTGIVH APA+G ED + + ++ V ++G + + F G+
Sbjct: 104 VVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLP---LLKTVDEEGKLL--VEPFKGL 158
Query: 784 SIWKASKLICSYLKKSKTLFNIE 806
+A++ I L+ LF E
Sbjct: 159 YFREANRAILRDLRGRGFLFKEE 181
Score = 73.9 bits (180), Expect = 1e-12, Method: Composition-based stats.
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 25/203 (12%)
Query: 1755 DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVH 1814
D S+YV F EP+K L K ++IWT+TPWT+P N A VHPE+ YA
Sbjct: 3 DPSVYVRFPLKEPKK---------LGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQ 53
Query: 1815 IKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSN-IDINYNRLSP 1873
+ ++ LIL L + L L + + P ++ Y
Sbjct: 54 VGDEA---LILEEGLGRKLL---GEGTQVLKTFPGKALEGLPYTPPYPQALEKGYF---- 103
Query: 1874 IYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGM 1933
+ L DY++ + GTGIVH APA+G ED + + ++ V ++G + + F G+
Sbjct: 104 VVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLP---LLKTVDEEGKLL--VEPFKGL 158
Query: 1934 SIWKASKLICSYLKKSKTLFNIE 1956
+A++ I L+ LF E
Sbjct: 159 YFREANRAILRDLRGRGFLFKEE 181
>pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1UDZ|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
Length = 182
Score = 73.6 bits (179), Expect = 1e-12, Method: Composition-based stats.
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 25/203 (12%)
Query: 605 DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVH 664
D S+YV F EP+K L K ++IWT+TPWT+P N A VHPE+ YA
Sbjct: 3 DPSVYVRFPLKEPKK---------LGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQ 53
Query: 665 IKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSN-IDINYNRLSP 723
+ ++ LIL L + L L + + P ++ Y
Sbjct: 54 VGDEA---LILEEGLGRKLL---GEGTPVLKTFPGKALEGLPYTPPYPQALEKGYF---- 103
Query: 724 IYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGM 783
+ L DY++ + GTGIVH APA+G ED + + ++ V ++G + + F G+
Sbjct: 104 VVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLP---LLKTVDEEGKLL--VEPFKGL 158
Query: 784 SIWKASKLICSYLKKSKTLFNIE 806
+A++ I L+ LF E
Sbjct: 159 YFREANRAILRDLRGRGFLFKEE 181
Score = 73.6 bits (179), Expect = 1e-12, Method: Composition-based stats.
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 25/203 (12%)
Query: 1755 DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVH 1814
D S+YV F EP+K L K ++IWT+TPWT+P N A VHPE+ YA
Sbjct: 3 DPSVYVRFPLKEPKK---------LGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQ 53
Query: 1815 IKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSN-IDINYNRLSP 1873
+ ++ LIL L + L L + + P ++ Y
Sbjct: 54 VGDEA---LILEEGLGRKLL---GEGTPVLKTFPGKALEGLPYTPPYPQALEKGYF---- 103
Query: 1874 IYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGM 1933
+ L DY++ + GTGIVH APA+G ED + + ++ V ++G + + F G+
Sbjct: 104 VVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLP---LLKTVDEEGKLL--VEPFKGL 158
Query: 1934 SIWKASKLICSYLKKSKTLFNIE 1956
+A++ I L+ LF E
Sbjct: 159 YFREANRAILRDLRGRGFLFKEE 181
>pdb|1YIX|A Chain A, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
Coli K12, At 1.9 A Resolution
pdb|1YIX|B Chain B, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
Coli K12, At 1.9 A Resolution
Length = 265
Score = 73.6 bits (179), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/56 (53%), Positives = 44/56 (78%)
Query: 3 DVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
+ A ++++LGFYISFSGIVTF+N++ L+ + L +L+ETDSPYL+P+PHR K
Sbjct: 162 ETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGK 217
>pdb|1WKQ|A Chain A, Crystal Structure Of Bacillus Subtilis Guanine Deaminase.
The First Domain-Swapped Structure In The Cytidine
Deaminase Superfamily
pdb|1WKQ|B Chain B, Crystal Structure Of Bacillus Subtilis Guanine Deaminase.
The First Domain-Swapped Structure In The Cytidine
Deaminase Superfamily
Length = 164
Score = 73.2 bits (178), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 67 PVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPC 126
P GAV+VK+ +I+ G N T NDPTAHAE+ A+R A K+L Y+ + +Y + EPC
Sbjct: 33 PFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLD-DCILYTSCEPC 91
Query: 127 AMCAGAIIHVRLGEIIYG 144
MC GAI R + Y
Sbjct: 92 PMCLGAIYWARPKAVFYA 109
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With A
Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With A
Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 11/173 (6%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W + W+EK + + + R K + PY +GD+H+GH N + D++ +F M
Sbjct: 10 EAKWQRFWEEKG-FMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRM 68
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGIL 1695
G++ + G+D G+P E K + P + Y I Q K +GIL
Sbjct: 69 QGYEVLHPMGWDAFGLPAENAALKF---GVHP-------KDWTYANIRQAKESLRLMGIL 118
Query: 1696 GEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI 1748
+WD T + F +++KG Y VNWC C++ LA ++
Sbjct: 119 YDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQV 171
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
PY +GD+H+GH N + D++ +F M G++ + G+D G+P E K + P
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKF---GVHP- 97
Query: 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578
+ Y I Q K +GIL +WD T + F +++KG Y
Sbjct: 98 ------KDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYR 151
Query: 579 GLKPVNWCFDCKSALAEAEI 598
VNWC C++ LA ++
Sbjct: 152 AKGLVNWCPKCQTVLANEQV 171
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 23/159 (14%)
Query: 876 DWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIK---EFL 932
DW ISRQR+WG PI + G + EL L+ ++ I ++ EF
Sbjct: 421 DWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFY 480
Query: 933 GDDAVN----YKKSNDTLDVWFDSGITHQTVIRGSHKKQLIF---------PADLYLEGS 979
K+ DT+D +FDS + H +L F P D Y+ G
Sbjct: 481 ETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYT-DPHNDRLPFDPEKANAWMPVDQYIGGV 539
Query: 980 DQ------HRGWFHSSLLTSIILNKSAPYKALLTHGFVV 1012
+ + +F L ++ P++ L T G V+
Sbjct: 540 EHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVL 578
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 23/159 (14%)
Query: 2026 DWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIK---EFL 2082
DW ISRQR+WG PI + G + EL L+ ++ I ++ EF
Sbjct: 421 DWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFY 480
Query: 2083 GDDAVN----YKKSNDTLDVWFDSGITHQTVIRGSHKKQLIF---------PADLYLEGS 2129
K+ DT+D +FDS + H +L F P D Y+ G
Sbjct: 481 ETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYT-DPHNDRLPFDPEKANAWMPVDQYIGGV 539
Query: 2130 DQ------HRGWFHSSLLTSIILNKSAPYKALLTHGFVV 2162
+ + +F L ++ P++ L T G V+
Sbjct: 540 EHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVL 578
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 11/173 (6%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W + W+EK + + + R K + PY +GD+H+GH N + D++ +F M
Sbjct: 10 EAKWQRFWEEKG-FMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRM 68
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGIL 1695
G++ + G+D G+P E K + P + Y I Q K +GIL
Sbjct: 69 QGYEVLHPMGWDAFGLPAENAALKF---GVHP-------KDWTYANIRQAKESLRLMGIL 118
Query: 1696 GEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI 1748
+WD T + F +++KG Y VNWC C++ LA ++
Sbjct: 119 YDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQV 171
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
PY +GD+H+GH N + D++ +F M G++ + G+D G+P E K + P
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKF---GVHP- 97
Query: 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578
+ Y I Q K +GIL +WD T + F +++KG Y
Sbjct: 98 ------KDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYR 151
Query: 579 GLKPVNWCFDCKSALAEAEI 598
VNWC C++ LA ++
Sbjct: 152 AKGLVNWCPKCQTVLANEQV 171
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 23/159 (14%)
Query: 876 DWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIK---EFL 932
DW ISRQR+WG PI + G + EL L+ ++ I ++ EF
Sbjct: 421 DWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFY 480
Query: 933 GDDAVN----YKKSNDTLDVWFDSGITHQTVIRGSHKKQLIF---------PADLYLEGS 979
K+ DT+D +FDS + H +L F P D Y+ G
Sbjct: 481 ETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYT-DPHNDRLPFDPEKANAWMPVDQYIGGV 539
Query: 980 DQ------HRGWFHSSLLTSIILNKSAPYKALLTHGFVV 1012
+ + +F L ++ P++ L T G V+
Sbjct: 540 EHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVL 578
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 23/159 (14%)
Query: 2026 DWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIK---EFL 2082
DW ISRQR+WG PI + G + EL L+ ++ I ++ EF
Sbjct: 421 DWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFY 480
Query: 2083 GDDAVN----YKKSNDTLDVWFDSGITHQTVIRGSHKKQLIF---------PADLYLEGS 2129
K+ DT+D +FDS + H +L F P D Y+ G
Sbjct: 481 ETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYT-DPHNDRLPFDPEKANAWMPVDQYIGGV 539
Query: 2130 DQ------HRGWFHSSLLTSIILNKSAPYKALLTHGFVV 2162
+ + +F L ++ P++ L T G V+
Sbjct: 540 EHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVL 578
>pdb|1TIY|A Chain A, X-Ray Structure Of Guanine Deaminase From Bacillus
Subtilis Northeast Structural Genomics Consortium Target
Sr160
pdb|1TIY|B Chain B, X-Ray Structure Of Guanine Deaminase From Bacillus
Subtilis Northeast Structural Genomics Consortium Target
Sr160
Length = 164
Score = 70.5 bits (171), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 67 PVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPC 126
P GAV+VK+ +I+ G N T NDPTAHAE+ A+R A K+L Y+ + +Y + EPC
Sbjct: 25 PFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLD-DCILYTSCEPC 83
Query: 127 AMCAGAIIHVRLGEIIYG 144
C GAI R + Y
Sbjct: 84 PXCLGAIYWARPKAVFYA 101
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu)
And Leucyl-Adenylate Analogue In The Aminoacylation
Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu)
And Leucyl-Adenylate Analogue In The Aminoacylation
Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu)
And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu)
And The Benzoxaborole An2679 In The Editing Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu)
And The Benzoxaborole An2679 In The Editing Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase, Trna(leu)
And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase, Trna(leu)
And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/373 (21%), Positives = 137/373 (36%), Gaps = 67/373 (17%)
Query: 1583 WQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQY 1642
W EK+ + S + K+ PY +G +H+GH N + D+I ++ M G +
Sbjct: 38 WDEKRTFEVTEDES--KEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQ 95
Query: 1643 VPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSY 1702
G+D G+P E K N +P Y+ I K LG +W
Sbjct: 96 PIGWDAFGLPAEGAAVK---NNTAPA-------PWTYDNIAYMKNQLKMLGFGYDWSREL 145
Query: 1703 KTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA------------EAEIEY 1750
T E + F ++KKG VY VNWC + ++ LA + ++E
Sbjct: 146 ATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVER 205
Query: 1751 KKKYDFSIYVGFSFSE-----------PEKIKSI--------------FNLKNLPSGKGY 1785
K+ + I + E P+ +K++ FN+ + +
Sbjct: 206 KEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDN---T 262
Query: 1786 IVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLXXXXXXXXXXX 1845
+ ++T+ P T L V A +N+P L AF + C
Sbjct: 263 LTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPEL---AAF--IDECRNTKVAEAEMAT 317
Query: 1846 XXXXXXLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKK 1905
+ HPL+ +I P++ +++ ++ GTG V + P + D+ K
Sbjct: 318 MEKKGVDTGFKAVHPLTGEEI------PVWAANFVLMEYGTGAVMAVPGHDQRDYEFASK 371
Query: 1906 QNMKDSDIINPVM 1918
+ I PV+
Sbjct: 372 YGLN----IKPVI 380
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/347 (21%), Positives = 128/347 (36%), Gaps = 65/347 (18%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
PY +G +H+GH N + D+I ++ M G + G+D G+P E K N +P
Sbjct: 62 PYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVK---NNTAPA 118
Query: 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578
Y+ I K LG +W T E + F ++KKG VY
Sbjct: 119 -------PWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYK 171
Query: 579 GLKPVNWCFDCKSALA------------EAEIEYKKKYDFSIYVGFSFSE---------- 616
VNWC + ++ LA + ++E K+ + I + E
Sbjct: 172 KTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDH 231
Query: 617 -PEKIKSI--------------FNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYA 661
P+ +K++ FN+ + + + ++T+ P T L V A
Sbjct: 232 WPDTVKTMQRNWIGRSEGVEITFNVNDYDN---TLTVYTTRPDTFMGCTYLAVAAGHPLA 288
Query: 662 LVHIKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSNIDINYNRL 721
+N+P L AF + C + HPL+ +I
Sbjct: 289 QKAAENNPEL---AAF--IDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEI----- 338
Query: 722 SPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768
P++ +++ ++ GTG V + P + D+ K + I PV+
Sbjct: 339 -PVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLN----IKPVI 380
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 27/158 (17%)
Query: 876 DWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI-------WQNLDI 928
DW +SRQR+WG PI + + +L ++ + + ++GI W +
Sbjct: 439 DWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTV 498
Query: 929 KEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI--------FPADLYLEGSD 980
+ + + DT D + +S + +K+ ++ P D+Y+ G +
Sbjct: 499 ------NGMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIE 552
Query: 981 Q------HRGWFHSSLLTSIILNKSAPYKALLTHGFVV 1012
+ +FH + + ++N P K LL G V+
Sbjct: 553 HAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVL 590
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 27/158 (17%)
Query: 2026 DWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI-------WQNLDI 2078
DW +SRQR+WG PI + + +L ++ + + ++GI W +
Sbjct: 439 DWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTV 498
Query: 2079 KEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI--------FPADLYLEGSD 2130
+ + + DT D + +S + +K+ ++ P D+Y+ G +
Sbjct: 499 ------NGMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIE 552
Query: 2131 Q------HRGWFHSSLLTSIILNKSAPYKALLTHGFVV 2162
+ +FH + + ++N P K LL G V+
Sbjct: 553 HAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVL 590
>pdb|1VHK|A Chain A, Crystal Structure Of An Hypothetical Protein
pdb|1VHK|B Chain B, Crystal Structure Of An Hypothetical Protein
pdb|1VHK|C Chain C, Crystal Structure Of An Hypothetical Protein
pdb|1VHK|D Chain D, Crystal Structure Of An Hypothetical Protein
Length = 268
Score = 64.3 bits (155), Expect = 8e-10, Method: Composition-based stats.
Identities = 54/171 (31%), Positives = 71/171 (41%), Gaps = 7/171 (4%)
Query: 274 ELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLXXXXXXXXXXXXXXX 333
ELP + + LP+ K + II+K ELG P R +++L
Sbjct: 78 ELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKI 137
Query: 334 XXSATEQSGRNILPVLAPNIYFNNWL-----ISKISCARILLSPRGRKKLSCWANNQSPQ 388
A EQS RN +P + F L K A S +G + P+
Sbjct: 138 AKEAAEQSYRNEVPRVXDVHSFQQLLQRXQDFDKCVVAYEESSKQGEISAFSAIVSSLPK 197
Query: 389 EVELLI--GPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 437
LLI GPEGG TE E E + LG RILRTETA L AL+ ++
Sbjct: 198 GSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAIS 248
Score = 57.4 bits (137), Expect = 9e-08, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 66/161 (40%), Gaps = 7/161 (4%)
Query: 1416 ALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLXXXXXXXXXXXXXXXXXSATEQSGR 1475
LP+ K + II+K ELG P R +++L A EQS R
Sbjct: 88 GLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYR 147
Query: 1476 NILPVLAPNIYFNNWL-----ISKISCARILLSPRGRKKLSCWANNQSPQEVELLI--GP 1528
N +P + F L K A S +G + P+ LLI GP
Sbjct: 148 NEVPRVXDVHSFQQLLQRXQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGP 207
Query: 1529 EGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 1569
EGG TE E E + LG RILRTETA L AL+ ++
Sbjct: 208 EGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAIS 248
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 73/174 (41%), Gaps = 14/174 (8%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGD-IHIGHAVNKILKDIIVKFYN 1634
E W +W++ K + K+ + KF D PY +G +H+GH DII ++
Sbjct: 15 EKKWQTRWEKTKAFKTTNKS---KDKFYALDMFPYPSGSGLHVGHPEGYTATDIISRYKR 71
Query: 1635 MDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGI 1694
+ GFD + G+D G+P E Q GK+ P ++N IE + LG
Sbjct: 72 LKGFDVLHPIGWDAFGLPAE-QYALSSGKHPQPFTLKN---------IENFRRQLKSLGF 121
Query: 1695 LGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI 1748
+++ T D F I+KKG VNWC + LA EI
Sbjct: 122 SFDYEKEVNTTDPSYYRWTQWIFKQIYKKGLAEIREVDVNWCPGLGTVLANEEI 175
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 11/152 (7%)
Query: 448 NRPKFILHDGPPYANGD-IHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQ 506
++ KF D PY +G +H+GH DII ++ + GFD + G+D G+P E Q
Sbjct: 34 SKDKFYALDMFPYPSGSGLHVGHPEGYTATDIISRYKRLKGFDVLHPIGWDAFGLPAE-Q 92
Query: 507 IEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRA 566
GK+ P ++N IE + LG +++ T D
Sbjct: 93 YALSSGKHPQPFTLKN---------IENFRRQLKSLGFSFDYEKEVNTTDPSYYRWTQWI 143
Query: 567 FGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI 598
F I+KKG VNWC + LA EI
Sbjct: 144 FKQIYKKGLAEIREVDVNWCPGLGTVLANEEI 175
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/350 (20%), Positives = 139/350 (39%), Gaps = 64/350 (18%)
Query: 863 GKDRLKSMILNR-PDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 921
GK+ + I + DW +RQR+WG P + + + + LI + +EL +E
Sbjct: 233 GKEEIDGKITYKLQDWIFARQRYWGEPFPVYFDEDNN---------VYLIDELVELPHME 283
Query: 922 -----------IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI- 969
+ N + ++ ++ + +K+ +T+ W S + I +
Sbjct: 284 NIMPSGTGEGPLATNTEWVQYKKNNKI-FKRDTNTMPQWAGSCWYYLAYIMKQEDGTYLP 342
Query: 970 -------------FPADLYLEGSDQ------HRGWFHSSLLTSIILNKSAPYKALLTHGF 1010
P DLY+ G + + ++H L I+ P++ L+ G
Sbjct: 343 IDSKKAYEAFSKWLPVDLYIGGQEHAVLHLLYARFWHKILYDLKIVPTKEPFQKLINQGM 402
Query: 1011 VVDXXXXXXXXXXXNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYR- 1069
++ N++ P ++ FGA+ LR++ D NE + V TY+
Sbjct: 403 ILGKDGQKMSKSLGNVVNPDEIIQNFGADTLRVYEMFMGPLTDTKKWNE--STVEATYKW 460
Query: 1070 --RIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMI 1127
R++ + + + S KI+ + + D++ I L KEI +F+++
Sbjct: 461 ILRVKRIFQIFIEDKS---------KINSLHKDDQF-ISEHNLLIKEITQDIEDLKFNIM 510
Query: 1128 VSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLR 1177
+SKL I+ + S Y K+++Y+ K T HI++ LL
Sbjct: 511 ISKLMIFVN----SLY---KKEKIYSLKPLKDFAIMFSTIAPHISEELLE 553
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/350 (20%), Positives = 139/350 (39%), Gaps = 64/350 (18%)
Query: 2013 GKDRLKSMILNR-PDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 2071
GK+ + I + DW +RQR+WG P + + + + LI + +EL +E
Sbjct: 233 GKEEIDGKITYKLQDWIFARQRYWGEPFPVYFDEDNN---------VYLIDELVELPHME 283
Query: 2072 -----------IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI- 2119
+ N + ++ ++ + +K+ +T+ W S + I +
Sbjct: 284 NIMPSGTGEGPLATNTEWVQYKKNNKI-FKRDTNTMPQWAGSCWYYLAYIMKQEDGTYLP 342
Query: 2120 -------------FPADLYLEGSDQ------HRGWFHSSLLTSIILNKSAPYKALLTHGF 2160
P DLY+ G + + ++H L I+ P++ L+ G
Sbjct: 343 IDSKKAYEAFSKWLPVDLYIGGQEHAVLHLLYARFWHKILYDLKIVPTKEPFQKLINQGM 402
Query: 2161 VVDXXXXXXXXXXXNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYR- 2219
++ N++ P ++ FGA+ LR++ D NE + V TY+
Sbjct: 403 ILGKDGQKMSKSLGNVVNPDEIIQNFGADTLRVYEMFMGPLTDTKKWNE--STVEATYKW 460
Query: 2220 --RIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMI 2277
R++ + + + S KI+ + + D++ I L KEI +F+++
Sbjct: 461 ILRVKRIFQIFIEDKS---------KINSLHKDDQF-ISEHNLLIKEITQDIEDLKFNIM 510
Query: 2278 VSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLR 2327
+SKL I+ + S Y K+++Y+ K T HI++ LL
Sbjct: 511 ISKLMIFVN----SLY---KKEKIYSLKPLKDFAIMFSTIAPHISEELLE 553
>pdb|2GZX|A Chain A, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446
From Staphylococcus Aureus. Northeast Structural
Genomics Consortium Target Zr237.
pdb|2GZX|B Chain B, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446
From Staphylococcus Aureus. Northeast Structural
Genomics Consortium Target Zr237
Length = 265
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 11 LGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
L FYIS G VTFKN+K ++V +S + +L+ETD+PYLSP P+R K
Sbjct: 169 LNFYISLGGPVTFKNAKQPKEVAKHVSXERLLVETDAPYLSPHPYRGK 216
>pdb|2O3K|A Chain A, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
Transition State Analogue Hpy
pdb|2O3K|B Chain B, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
Transition State Analogue Hpy
Length = 161
Score = 57.0 bits (136), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 22/142 (15%)
Query: 57 AKLALIAGEVPVGAVLV--KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS 114
A L G VP+G L+ K+ V+ G+N + + T H EI L +L +
Sbjct: 25 ALLGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEG--KVY 82
Query: 115 KNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQ--EKKLN---HHT 169
K+ +Y TL PC MC GAI I+YG P G +N EK L H
Sbjct: 83 KDTTLYTTLSPCEMCTGAI-------IMYGIPRC---VIGENVNFKSKGEKYLQTRGHEV 132
Query: 170 ILTGGVMQKQCEKLLKSFFIKR 191
++ V ++C+KL+K F +R
Sbjct: 133 VV---VDDERCKKLMKQFIDER 151
>pdb|1YSD|A Chain A, Yeast Cytosine Deaminase Double Mutant
pdb|1YSD|B Chain B, Yeast Cytosine Deaminase Double Mutant
Length = 161
Score = 57.0 bits (136), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 22/142 (15%)
Query: 57 AKLALIAGEVPVGAVLV--KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS 114
A L G VP+G L+ K+ V+ G+N + + T H EI L +L +
Sbjct: 25 ALLGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEG--KVY 82
Query: 115 KNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQ--EKKLN---HHT 169
K+ +Y TL PC MC GAI I+YG P G +N EK L H
Sbjct: 83 KDTTLYTTLSPCDMCTGAI-------IMYGIPRC---VVGENVNFKSKGEKYLQTRGHEV 132
Query: 170 ILTGGVMQKQCEKLLKSFFIKR 191
++ V ++C+KL+K F +R
Sbjct: 133 VV---VDDERCKKLMKQFIDER 151
>pdb|1YSB|A Chain A, Yeast Cytosine Deaminase Triple Mutant
pdb|1YSB|B Chain B, Yeast Cytosine Deaminase Triple Mutant
Length = 161
Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 22/142 (15%)
Query: 57 AKLALIAGEVPVGAVLV--KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS 114
A L G VP+G L+ K+ V+ G+N + + T H EI L +L +
Sbjct: 25 ALLGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEG--KVY 82
Query: 115 KNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQ--EKKLN---HHT 169
K+ +Y TL PC MC GAI I+YG P G +N EK L H
Sbjct: 83 KDTTLYTTLSPCDMCTGAI-------IMYGIPRC---VIGENVNFKSKGEKYLQTRGHEV 132
Query: 170 ILTGGVMQKQCEKLLKSFFIKR 191
++ V ++C+KL+K F +R
Sbjct: 133 VV---VDDERCKKLMKQFIDER 151
>pdb|1P6O|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
pdb|1P6O|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
pdb|1RB7|A Chain A, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
Acetate.
pdb|1RB7|B Chain B, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
Acetate
Length = 161
Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 22/142 (15%)
Query: 57 AKLALIAGEVPVGAVLV--KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS 114
A L G VP+G L+ K+ V+ G+N + + T H EI L +L +
Sbjct: 25 AALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEG--KVY 82
Query: 115 KNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQ--EKKLN---HHT 169
K+ +Y TL PC MC GAI I+YG P G +N EK L H
Sbjct: 83 KDTTLYTTLSPCDMCTGAI-------IMYGIPRC---VVGENVNFKSKGEKYLQTRGHEV 132
Query: 170 ILTGGVMQKQCEKLLKSFFIKR 191
++ V ++C+K++K F +R
Sbjct: 133 VV---VDDERCKKIMKQFIDER 151
>pdb|1UAQ|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase
pdb|1UAQ|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase
Length = 158
Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 22/142 (15%)
Query: 57 AKLALIAGEVPVGAVLV--KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS 114
A L G VP+G L+ K+ V+ G+N + + T H EI L +L +
Sbjct: 22 AALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEG--KVY 79
Query: 115 KNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQ--EKKLN---HHT 169
K+ +Y TL PC MC GAI I+YG P G +N EK L H
Sbjct: 80 KDTTLYTTLSPCDMCTGAI-------IMYGIPRC---VVGENVNFKSKGEKYLQTRGHEV 129
Query: 170 ILTGGVMQKQCEKLLKSFFIKR 191
++ V ++C+K++K F +R
Sbjct: 130 VV---VDDERCKKIMKQFIDER 148
>pdb|4J3C|A Chain A, Crystal Structure Of 16s Ribosomal Rna Methyltransferase
Rsme
pdb|4J3C|B Chain B, Crystal Structure Of 16s Ribosomal Rna Methyltransferase
Rsme
Length = 267
Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 27/226 (11%)
Query: 229 LNVLRVKYKNTIILFNGFGGEYXXXXXXXXXXXXXXXXXFLFREIELPYTITLVQALPEN 288
+NVLR+ +++++FNG GE+ R P + + A +
Sbjct: 55 INVLRLGEGSSLLVFNGRDGEWRAEIAXPSRKQAVLVAVEQTRPQPAPCDLVYLFAPLKV 114
Query: 289 RKFDLIIEKSVELGVKIIQPIITNRCIIQLXXXXXXXXXXXXXXXXXSATEQSGRNILPV 348
+ D +++K+VE G ++QP+ T ++ A EQ G +P
Sbjct: 115 GRLDYLVQKAVEXGAGVLQPVXTQHVQGKI------GSLERVRANVIEAAEQCGVLGIPA 168
Query: 349 LAPNIYFNNWLISKISCARILLSPRGRKKLSCWANN--QSP---------QEVELLIGPE 397
+ + LI PR R+ + C N Q+P + + LLIGPE
Sbjct: 169 VEEPRKLEDLLID---------WPRDRRIVFCDEGNDSQNPLPILEGIAERRLALLIGPE 219
Query: 398 GGFTEKEENLAYECG-VIILSLGKRILRTETASLVALAILNGVWGE 442
GGF+E E +L V + LG RILR +TA++ A A++ G+
Sbjct: 220 GGFSEAERDLLRSRDFVTAIPLGPRILRADTAAVAAXAVIQATLGD 265
Score = 48.1 bits (113), Expect = 6e-05, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 27/150 (18%)
Query: 1422 KFDLIIEKSVELGVKIIQPIITNRCIIQLXXXXXXXXXXXXXXXXXSATEQSGRNILPVL 1481
+ D +++K+VE G ++QP+ T ++ A EQ G +P +
Sbjct: 116 RLDYLVQKAVEXGAGVLQPVXTQHVQGKIGSLERVRANVI------EAAEQCGVLGIPAV 169
Query: 1482 APNIYFNNWLISKISCARILLSPRGRKKLSCWANN--QSP---------QEVELLIGPEG 1530
+ LI PR R+ + C N Q+P + + LLIGPEG
Sbjct: 170 EEPRKLEDLLID---------WPRDRRIVFCDEGNDSQNPLPILEGIAERRLALLIGPEG 220
Query: 1531 GFTEKEENLAYECG-VIILSLGKRILRTET 1559
GF+E E +L V + LG RILR +T
Sbjct: 221 GFSEAERDLLRSRDFVTAIPLGPRILRADT 250
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/377 (19%), Positives = 138/377 (36%), Gaps = 38/377 (10%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W K+W E KI+ + KF + PY +G +H+GHA + D+I +F M
Sbjct: 10 EEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRM 69
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI------------- 1682
G++ + + G PI E++ ++ I I + E +
Sbjct: 70 QGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYF 129
Query: 1683 -EQQKMDFMRLGILGEWDNSYKTMDFLNEANEL--RAFGIIFKKGYVYHGLKPVNWCFDC 1739
+ K F+R G +W + T ++ F + +KGY+ G V W
Sbjct: 130 MKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVV 189
Query: 1740 KSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPAN 1799
+ L + ++ + Y+ F E + I+ LP+ T P T+
Sbjct: 190 GTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIY----LPAA-------TLRPETVYGV 238
Query: 1800 QALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFH 1859
+ V+P Y ++ + L L +
Sbjct: 239 TNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRN 298
Query: 1860 PLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKK-----QNMKDSDII 1914
P+S ++ I +++ D+ TG+V S PA+ D + + + ++ DI
Sbjct: 299 PVSGDEVI------ILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDID 352
Query: 1915 NPVMDDGNFISTLPLFG 1931
++++ +IS + L G
Sbjct: 353 PRIVENITYISLIKLEG 369
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/360 (18%), Positives = 130/360 (36%), Gaps = 38/360 (10%)
Query: 443 IKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMP 502
I+ KF + PY +G +H+GHA + D+I +F M G++ + + G P
Sbjct: 27 IRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSP 86
Query: 503 IEIQIEKLYGKNLSPIEIQNKARALAYEKI--------------EQQKMDFMRLGILGEW 548
I E++ ++ I I + E + + K F+R G +W
Sbjct: 87 IVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDW 146
Query: 549 DNSYKTMDFLNEANEL--RAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 606
+ T ++ F + +KGY+ G V W + L + ++ +
Sbjct: 147 SREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPI 206
Query: 607 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIK 666
Y+ F E + I+ LP+ T P T+ + V+P Y ++
Sbjct: 207 LDYIIIKFELRENGEVIY----LPAA-------TLRPETVYGVTNMWVNPNATYVKAKVR 255
Query: 667 NDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSNIDINYNRLSPIYL 726
+ L L +P+S ++ I
Sbjct: 256 RKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVI------ILP 309
Query: 727 GDYITVDSGTGIVHSAPAYGIEDFLIFKK-----QNMKDSDIINPVMDDGNFISTLPLFG 781
+++ D+ TG+V S PA+ D + + + ++ DI ++++ +IS + L G
Sbjct: 310 AEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEG 369
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/377 (19%), Positives = 138/377 (36%), Gaps = 38/377 (10%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W K+W E KI+ + KF + PY +G +H+GHA + D+I +F M
Sbjct: 10 EEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRM 69
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI------------- 1682
G++ + + G PI E++ ++ I I + E +
Sbjct: 70 QGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYF 129
Query: 1683 -EQQKMDFMRLGILGEWDNSYKTMDFLNEANEL--RAFGIIFKKGYVYHGLKPVNWCFDC 1739
+ K F+R G +W + T ++ F + +KGY+ G V W
Sbjct: 130 MKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVV 189
Query: 1740 KSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPAN 1799
+ L + ++ + Y+ F E + I+ LP+ T P T+
Sbjct: 190 GTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIY----LPAA-------TLRPETVYGV 238
Query: 1800 QALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFH 1859
+ V+P Y ++ + L L +
Sbjct: 239 TNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRN 298
Query: 1860 PLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKK-----QNMKDSDII 1914
P+S ++ I +++ D+ TG+V S PA+ D + + + ++ DI
Sbjct: 299 PVSGDEVI------ILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDID 352
Query: 1915 NPVMDDGNFISTLPLFG 1931
++++ +IS + L G
Sbjct: 353 PRIVENITYISLIKLEG 369
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/360 (18%), Positives = 130/360 (36%), Gaps = 38/360 (10%)
Query: 443 IKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMP 502
I+ KF + PY +G +H+GHA + D+I +F M G++ + + G P
Sbjct: 27 IRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSP 86
Query: 503 IEIQIEKLYGKNLSPIEIQNKARALAYEKI--------------EQQKMDFMRLGILGEW 548
I E++ ++ I I + E + + K F+R G +W
Sbjct: 87 IVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDW 146
Query: 549 DNSYKTMDFLNEANEL--RAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 606
+ T ++ F + +KGY+ G V W + L + ++ +
Sbjct: 147 SREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPI 206
Query: 607 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIK 666
Y+ F E + I+ LP+ T P T+ + V+P Y ++
Sbjct: 207 LDYIIIKFELRENGEVIY----LPAA-------TLRPETVYGVTNMWVNPNATYVKAKVR 255
Query: 667 NDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSNIDINYNRLSPIYL 726
+ L L +P+S ++ I
Sbjct: 256 RKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVI------ILP 309
Query: 727 GDYITVDSGTGIVHSAPAYGIEDFLIFKK-----QNMKDSDIINPVMDDGNFISTLPLFG 781
+++ D+ TG+V S PA+ D + + + ++ DI ++++ +IS + L G
Sbjct: 310 AEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEG 369
>pdb|1V6Z|A Chain A, Crystal Structure Of Tt1573 From Thermus Thermophilus
pdb|1V6Z|B Chain B, Crystal Structure Of Tt1573 From Thermus Thermophilus
pdb|2CX8|A Chain A, Crystal Structure Of Methyltransferase With Ligand(Sah)
pdb|2CX8|B Chain B, Crystal Structure Of Methyltransferase With Ligand(Sah)
pdb|2Z0Y|A Chain A, Crystal Structure Of Ttha0657-Sam Complex
pdb|2Z0Y|B Chain B, Crystal Structure Of Ttha0657-Sam Complex
Length = 228
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 272 EIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLXXXXXXXXXXXXX 331
E E+ + L AL + K ++ + ELG IQP++T + +
Sbjct: 66 EREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPK---EXGEGKLRRLR 122
Query: 332 XXXXSATEQSGRNILPVLAPNIYFNNW-LISKISCARILLSPRGRKKLSCWANNQSPQEV 390
A +QSGR ++P + P I +++ A + + R R+ L + + P +
Sbjct: 123 AVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVL----DPEKP--L 176
Query: 391 ELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTET 427
L +GPEGGF E+E L G +SLG+RILR ET
Sbjct: 177 ALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAET 213
Score = 53.1 bits (126), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 1416 ALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLXXXXXXXXXXXXXXXXXSATEQSGR 1475
AL + K ++ + ELG IQP++T + + A +QSGR
Sbjct: 78 ALLKGDKLAEVVRAATELGATRIQPLVTRHSVPK---EXGEGKLRRLRAVALEAAKQSGR 134
Query: 1476 NILPVLAPNIYFNNW-LISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTE 1534
++P + P I +++ A + + R R+ L + + P + L +GPEGGF E
Sbjct: 135 VVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVL----DPEKP--LALAVGPEGGFAE 188
Query: 1535 KEENLAYECGVIILSLGKRILRTET 1559
+E L G +SLG+RILR ET
Sbjct: 189 EEVALLEARGFTPVSLGRRILRAET 213
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 78/157 (49%), Gaps = 19/157 (12%)
Query: 1592 IRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGM 1651
++K + P + ++D P H+GHA I D I ++Y + +D ++ G D HG+
Sbjct: 4 MKKFYVTTPIYYVNDVP-------HLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGL 56
Query: 1652 PIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEA 1711
I+ + E+L +SP E+ ++ A ++K+ +F+++ E+ +T D +
Sbjct: 57 KIQKKAEEL---GISPKELVDR-NAERFKKL----WEFLKI----EYTKFIRTTDPYHVK 104
Query: 1712 NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI 1748
+ F +K+G +Y G +C C+ +EAE+
Sbjct: 105 FVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAEL 141
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 12/139 (8%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y N H+GHA I D I ++Y + +D ++ G D HG+ I+ + E+L +SP E
Sbjct: 15 YVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEEL---GISPKE 71
Query: 520 IQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 579
+ ++ A ++K+ +F+++ E+ +T D + + F +K+G +Y G
Sbjct: 72 LVDR-NAERFKKL----WEFLKI----EYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLG 122
Query: 580 LKPVNWCFDCKSALAEAEI 598
+C C+ +EAE+
Sbjct: 123 EYEGWYCVGCEEFKSEAEL 141
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 84/205 (40%), Gaps = 24/205 (11%)
Query: 945 TLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPY 1002
T+ VWFD+ + + + K ++ +PADL+L G D R FH+ + + L P
Sbjct: 226 TIYVWFDALFNYISAL--EDKVEIYWPADLHLVGKDILR--FHTVYWPAFLMSLGYELP- 280
Query: 1003 KALLTHGFVVDXXXXXXXXXXXNIIKPQKLCNLFGAEILRLWV-------ASTDYSKDL- 1054
K + HG+ N++ P ++ +G + +R ++ D+SK
Sbjct: 281 KKVFAHGWWT-VEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAI 339
Query: 1055 --SISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQ 1112
I+ E+ N + Y R+ N L ++ + + +I + +I N N
Sbjct: 340 LNRINGELANEIGNLYSRVVNMAHKFLGG------EVSGARDEEYAKIAQESIKNYENYM 393
Query: 1113 KEILSHYRMYEFHMIVSKLQIYCSE 1137
+++ + + E S L Y E
Sbjct: 394 EKVNFYKAIEEILKFTSYLNKYVDE 418
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 84/205 (40%), Gaps = 24/205 (11%)
Query: 2095 TLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPY 2152
T+ VWFD+ + + + K ++ +PADL+L G D R FH+ + + L P
Sbjct: 226 TIYVWFDALFNYISAL--EDKVEIYWPADLHLVGKDILR--FHTVYWPAFLMSLGYELP- 280
Query: 2153 KALLTHGFVVDXXXXXXXXXXXNIIKPQKLCNLFGAEILRLWV-------ASTDYSKDL- 2204
K + HG+ N++ P ++ +G + +R ++ D+SK
Sbjct: 281 KKVFAHGWWT-VEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAI 339
Query: 2205 --SISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQ 2262
I+ E+ N + Y R+ N L ++ + + +I + +I N N
Sbjct: 340 LNRINGELANEIGNLYSRVVNMAHKFLGG------EVSGARDEEYAKIAQESIKNYENYM 393
Query: 2263 KEILSHYRMYEFHMIVSKLQIYCSE 2287
+++ + + E S L Y E
Sbjct: 394 EKVNFYKAIEEILKFTSYLNKYVDE 418
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 510
K ++ PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++L
Sbjct: 19 KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 78
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 1660
K ++ PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++L
Sbjct: 19 KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 78
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 510
PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++L
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 65
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 1660
PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++L
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 65
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 510
PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++L
Sbjct: 15 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 66
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 1660
PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++L
Sbjct: 15 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 66
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 510
PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++L
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 65
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 1660
PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++L
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 65
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 510
PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++L
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 65
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 1660
PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++L
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 65
>pdb|1OX7|A Chain A, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
Inorganic Zinc Bound
pdb|1OX7|B Chain B, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
Inorganic Zinc Bound
Length = 161
Score = 51.2 bits (121), Expect = 6e-06, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 57 AKLALIAGEVPVGAVLV--KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS 114
A L G VP+G L+ K+ V+ G+N + + T H EI L +L +
Sbjct: 25 AALGYKEGGVPIGGCLINNKDGSVLGRGHNXRFQKGSATLHGEISTLENCGRLEG--KVY 82
Query: 115 KNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQ--EKKLN---HHT 169
K+ +Y TL PC C GAII YG P G +N EK L H
Sbjct: 83 KDTTLYTTLSPCDXCTGAIIX-------YGIPRC---VVGENVNFKSKGEKYLQTRGHEV 132
Query: 170 ILTGGVMQKQCEKLLKSFFIKR 191
++ V ++C+K+ K F +R
Sbjct: 133 VV---VDDERCKKIXKQFIDER 151
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 48.1 bits (113), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 445 ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIE 504
S++R K+ + Y NG HIGHA I D + +F ++G D ++ G D HG+ +
Sbjct: 20 GSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKM- 78
Query: 505 IQIEKLYGKNLSPIEIQNKA----RALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNE 560
++ + ++P ++ ++ R +A E + D++R + YK + +
Sbjct: 79 --LQSARKEGITPRDLADRNTSAFRRMA-EVLNSSNDDYIRT----SEERHYKASQAIWQ 131
Query: 561 ANELRAFGIIFKKGY 575
A + A G I+K GY
Sbjct: 132 A--MVANGDIYKGGY 144
Score = 48.1 bits (113), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 1595 ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIE 1654
S++R K+ + Y NG HIGHA I D + +F ++G D ++ G D HG+ +
Sbjct: 20 GSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKM- 78
Query: 1655 IQIEKLYGKNLSPIEIQNKA----RALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNE 1710
++ + ++P ++ ++ R +A E + D++R + YK + +
Sbjct: 79 --LQSARKEGITPRDLADRNTSAFRRMA-EVLNSSNDDYIRT----SEERHYKASQAIWQ 131
Query: 1711 ANELRAFGIIFKKGY 1725
A + A G I+K GY
Sbjct: 132 A--MVANGDIYKGGY 144
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 48.1 bits (113), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 452 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHG 500
F + Y NG HIGHA I D I +F +DG+D +Y+ G D HG
Sbjct: 14 FYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHG 62
Score = 48.1 bits (113), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 1602 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHG 1650
F + Y NG HIGHA I D I +F +DG+D +Y+ G D HG
Sbjct: 14 FYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHG 62
>pdb|1J6O|A Chain A, Crystal Structure Of Tatd-related Deoxyribonuclease
(tm0667) From Thermotoga Maritima At 1.8 A Resolution
Length = 268
Score = 48.1 bits (113), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 36/54 (66%)
Query: 5 AREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
A++ I+LGF + G VT+ ++ L++V+ + L+ +++ETD P+L P P R K
Sbjct: 173 AKKFIDLGFLLGIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFLPPQPFRGK 226
>pdb|2HVV|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVV|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|C Chain C, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
Length = 184
Score = 48.1 bits (113), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 18/93 (19%)
Query: 68 VGAVLVKNNLVISYGYNQQITRNDP---------------TAHAEIIALRMASKLLNNYR 112
VGAVLVKNN +I+ GYN + D T HAE+ AL +K
Sbjct: 63 VGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAK---EGI 119
Query: 113 FSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGT 145
+ N +IYVT PC C A++ + +I Y T
Sbjct: 120 SANNTEIYVTHFPCINCTKALLQAGVKKITYNT 152
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 451 KFILHDGPPYANGDIHIGHAVNKIL-KDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK 509
++++ PYANG IH GH L DI V++ + G D ++ G D HG PI + K
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Query: 510 LYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGI 544
+ SP EI + E EQ K+ F R I
Sbjct: 63 ---EGRSPREIVD-------EFHEQIKITFQRAKI 87
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 1601 KFILHDGPPYANGDIHIGHAVNKIL-KDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK 1659
++++ PYANG IH GH L DI V++ + G D ++ G D HG PI + K
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Query: 1660 LYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGI 1694
+ SP EI + E EQ K+ F R I
Sbjct: 63 ---EGRSPREIVD-------EFHEQIKITFQRAKI 87
>pdb|1Z85|A Chain A, Crystal Structure Of A Predicted Rna Methyltransferase
(Tm1380) From Thermotoga Maritima Msb8 At 2.12 A
Resolution
pdb|1Z85|B Chain B, Crystal Structure Of A Predicted Rna Methyltransferase
(Tm1380) From Thermotoga Maritima Msb8 At 2.12 A
Resolution
Length = 234
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 390 VELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAIL 436
+ +++GPEGGF+EKE L I+SLGK+ILR ETA+++ + +
Sbjct: 182 ITVVVGPEGGFSEKEREL-LRSSTTIVSLGKKILRFETAAILTVGYI 227
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 1522 VELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAIL 1568
+ +++GPEGGF+EKE L I+SLGK+ILR ETA+++ + +
Sbjct: 182 ITVVVGPEGGFSEKEREL-LRSSTTIVSLGKKILRFETAAILTVGYI 227
>pdb|2G84|A Chain A, Cytidine And Deoxycytidylate Deaminase Zinc-Binding Region
From Nitrosomonas Europaea.
pdb|2G84|B Chain B, Cytidine And Deoxycytidylate Deaminase Zinc-Binding Region
From Nitrosomonas Europaea
Length = 197
Score = 44.7 bits (104), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 56 RAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSK 115
RA +A G + L+I+ G N+ + AHAEI+AL +A L+ + S
Sbjct: 40 RANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSA 99
Query: 116 N----YKIYVTLEPCAMCAGAII 134
+ ++ + EPC MC GA+I
Sbjct: 100 DGLPACELVTSAEPCVMCFGAVI 122
>pdb|3KW2|A Chain A, Crystal Structure Of Probable Rrna-Methyltransferase From
Porphyromonas Gingivalis
pdb|3KW2|B Chain B, Crystal Structure Of Probable Rrna-Methyltransferase From
Porphyromonas Gingivalis
Length = 257
Score = 44.7 bits (104), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 388 QEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVA 432
Q+V +LIGPEG F+ E A G +SLG+ LRTETA LVA
Sbjct: 191 QDVLILIGPEGDFSPSEVESALLAGFAPVSLGESRLRTETAGLVA 235
Score = 44.7 bits (104), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 1520 QEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVA 1564
Q+V +LIGPEG F+ E A G +SLG+ LRTETA LVA
Sbjct: 191 QDVLILIGPEGDFSPSEVESALLAGFAPVSLGESRLRTETAGLVA 235
>pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli
pdb|2G6V|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli
pdb|2OBC|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
pdb|2OBC|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
Length = 402
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 20/131 (15%)
Query: 68 VGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCA 127
VG V+VK+ ++ GY+Q+ +P HAE+ ALR A + +K YVTLEPC+
Sbjct: 54 VGCVIVKDGEIVGEGYHQRA--GEP--HAEVHALRXAGEK------AKGATAYVTLEPCS 103
Query: 128 M------CAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCE 181
C A+I + ++ G + Q+ ++ ++ G+ + E
Sbjct: 104 HHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGID----VSHGLXXSEAE 159
Query: 182 KLLKSFFIKRR 192
+L K F + R
Sbjct: 160 QLNKGFLKRXR 170
>pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
pdb|2O7P|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
Length = 380
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 20/131 (15%)
Query: 68 VGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCA 127
VG V+VK+ ++ GY+Q+ +P HAE+ ALR A + +K YVTLEPC+
Sbjct: 32 VGCVIVKDGEIVGEGYHQRA--GEP--HAEVHALRXAGEK------AKGATAYVTLEPCS 81
Query: 128 M------CAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCE 181
C A+I + ++ G + Q+ ++ ++ G+ + E
Sbjct: 82 HHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGID----VSHGLXXSEAE 137
Query: 182 KLLKSFFIKRR 192
+L K F + R
Sbjct: 138 QLNKGFLKRXR 148
>pdb|2HXV|A Chain A, Crystal Structure Of A
Diaminohydroxyphosphoribosylaminopyrimidine Deaminase
5-Amino-6-(5-Phosphoribosylamino)uracil Reductase
(Tm1828) From Thermotoga Maritima At 1.80 A Resolution
Length = 360
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 67 PVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPC 126
PVGAV+VK+ +I+ G++ HAE A+ A K + R + + VTLEPC
Sbjct: 37 PVGAVVVKDGRIIAEGFHPYFG----GPHAERXAIESARKKGEDLRGAT---LIVTLEPC 89
Query: 127 ------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQC 180
C II + ++ GT + + EK NH + GV++++
Sbjct: 90 DHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGV-----EKFRNHGIEVIEGVLEEEV 144
Query: 181 EKLLKSFFI----KRRNFVKNK 198
+KL + FFI K+R FV K
Sbjct: 145 KKLCE-FFITYVTKKRPFVALK 165
>pdb|2EGV|A Chain A, Crystal Structure Of Rrna Methyltransferase With Sam
Ligand
pdb|2EGV|B Chain B, Crystal Structure Of Rrna Methyltransferase With Sam
Ligand
pdb|2EGW|A Chain A, Crystal Structure Of Rrna Methyltransferase With Sah
Ligand
pdb|2EGW|B Chain B, Crystal Structure Of Rrna Methyltransferase With Sah
Ligand
Length = 229
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 24/171 (14%)
Query: 276 PYTITLVQALPENRK-FDLIIEKSVELGVKIIQPIITNRCIIQLXXXXXXXXXXXXXXXX 334
P ITL Q++ + K D I+ ++ ELGV PII+ R +
Sbjct: 70 PKDITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQK--EEAILKKTEKWKRIV 127
Query: 335 XSATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKK--LSCWANNQSPQEVEL 392
A +QS R I + + ++ L P + L + P++V L
Sbjct: 128 IEAMKQSRRPIPMEIKKPVRLSD------------LIPESEENIILDNFYEGVKPKDVNL 175
Query: 393 -------LIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAIL 436
++GPEGGF+++E + E G + L LRTETA + ++IL
Sbjct: 176 EAKTYSVVVGPEGGFSKRESQILREKGFKSVLLEPYTLRTETAVVSIVSIL 226
Score = 37.4 bits (85), Expect = 0.097, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 23/157 (14%)
Query: 1421 RKFDLIIEKSVELGVKIIQPIITNRCIIQLXXXXXXXXXXXXXXXXXSATEQSGRNILPV 1480
+ D I+ ++ ELGV PII+ R + A +QS R I
Sbjct: 84 KTMDTIVRQATELGVLTFVPIISERSFQK--EEAILKKTEKWKRIVIEAMKQSRRPIPME 141
Query: 1481 LAPNIYFNNWLISKISCARILLSPRGRKK--LSCWANNQSPQEVEL-------LIGPEGG 1531
+ + ++ L P + L + P++V L ++GPEGG
Sbjct: 142 IKKPVRLSD------------LIPESEENIILDNFYEGVKPKDVNLEAKTYSVVVGPEGG 189
Query: 1532 FTEKEENLAYECGVIILSLGKRILRTETASLVALAIL 1568
F+++E + E G + L LRTETA + ++IL
Sbjct: 190 FSKRESQILREKGFKSVLLEPYTLRTETAVVSIVSIL 226
>pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|3EX8|A Chain A, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|B Chain B, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|C Chain C, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|D Chain D, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|4G3M|A Chain A, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|B Chain B, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|C Chain C, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|D Chain D, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
Length = 373
Score = 40.4 bits (93), Expect = 0.012, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 20/127 (15%)
Query: 68 VGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCA 127
VGAV+VK+ ++ G + + AHAE+ A+ MA ++ IYVTLEPC+
Sbjct: 38 VGAVVVKDGQIVGMGAHLKYGE----AHAEVHAIHMAGA------HAEGADIYVTLEPCS 87
Query: 128 M------CAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCE 181
CA II+ + + G I++ +E + + G++ Q E
Sbjct: 88 HYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIE----VREGILADQAE 143
Query: 182 KLLKSFF 188
+L + F
Sbjct: 144 RLNEKFL 150
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 39.3 bits (90), Expect = 0.030, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHG 500
Y N + H+GHA ++ D + +++ +DG+ ++ G D HG
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
Score = 39.3 bits (90), Expect = 0.030, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHG 1650
Y N + H+GHA ++ D + +++ +DG+ ++ G D HG
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 39.3 bits (90), Expect = 0.031, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHG 500
Y N + H+GHA ++ D + +++ +DG+ ++ G D HG
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
Score = 39.3 bits (90), Expect = 0.031, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHG 1650
Y N + H+GHA ++ D + +++ +DG+ ++ G D HG
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 39.3 bits (90), Expect = 0.031, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHG 500
Y N + H+GHA ++ D + +++ +DG+ ++ G D HG
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
Score = 39.3 bits (90), Expect = 0.031, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHG 1650
Y N + H+GHA ++ D + +++ +DG+ ++ G D HG
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
>pdb|1ZZM|A Chain A, Crystal Structure Of Yjjv, Tatd Homolog From Escherichia
Coli K12, At 1.8 A Resolution
Length = 259
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSP 48
SL A ++LG+ I G +T+ + + V+ + L ++L+ETD+P
Sbjct: 162 SLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAP 209
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y N HIGH + ++ D+I +++ + G + G D HG + E K +SP +
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV---AEAAKQKQVSPYD 75
Query: 520 IQNKARALAYEKIEQQKMDF 539
A A ++K +Q MD+
Sbjct: 76 FTT-AVAGEFKKCFEQ-MDY 93
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y N HIGH + ++ D+I +++ + G + G D HG + E K +SP +
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV---AEAAKQKQVSPYD 75
Query: 1670 IQNKARALAYEKIEQQKMDF 1689
A A ++K +Q MD+
Sbjct: 76 FTT-AVAGEFKKCFEQ-MDY 93
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y N HIGH + ++ D+I +++ + G + G D HG + E K +SP +
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV---AEAAKQKQVSPYD 75
Query: 520 IQNKARALAYEKIEQQKMDF 539
A A ++K +Q MD+
Sbjct: 76 FTT-AVAGEFKKCFEQ-MDY 93
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y N HIGH + ++ D+I +++ + G + G D HG + E K +SP +
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV---AEAAKQKQVSPYD 75
Query: 1670 IQNKARALAYEKIEQQKMDF 1689
A A ++K +Q MD+
Sbjct: 76 FTT-AVAGEFKKCFEQ-MDY 93
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y N HIGH + ++ D+I +++ + G + G D HG + E K +SP +
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV---AEAAKQKQVSPYD 75
Query: 520 IQNKARALAYEKIEQQKMDF 539
A A ++K +Q MD+
Sbjct: 76 FTT-AVAGEFKKXFEQ-MDY 93
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y N HIGH + ++ D+I +++ + G + G D HG + E K +SP +
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV---AEAAKQKQVSPYD 75
Query: 1670 IQNKARALAYEKIEQQKMDF 1689
A A ++K +Q MD+
Sbjct: 76 FTT-AVAGEFKKXFEQ-MDY 93
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y N HIGH + ++ D++ +++ + G + + G D HG + E + +SP++
Sbjct: 36 YVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKV---AEAAAKQGVSPMD 92
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y N HIGH + ++ D++ +++ + G + + G D HG + E + +SP++
Sbjct: 36 YVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKV---AEAAAKQGVSPMD 92
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 146
Score = 32.3 bits (72), Expect = 3.2, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 623 IFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 657
++ L+ G G+I I T P T+ A+QA+ VHPE
Sbjct: 6 LYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPE 40
Score = 32.3 bits (72), Expect = 3.2, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 1773 IFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
++ L+ G G+I I T P T+ A+QA+ VHPE
Sbjct: 6 LYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPE 40
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 147
Score = 32.3 bits (72), Expect = 3.2, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 623 IFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 657
++ L+ G G+I I T P T+ A+QA+ VHPE
Sbjct: 6 LYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPE 40
Score = 32.3 bits (72), Expect = 3.2, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 1773 IFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
++ L+ G G+I I T P T+ A+QA+ VHPE
Sbjct: 6 LYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPE 40
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 31.2 bits (69), Expect = 6.7, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 510 LYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGI 569
LYGK +E+ ++ R +A+ K +Q +D R+G+ G + Y T+ L +A++ A G+
Sbjct: 574 LYGKQ-GTVEVADQLRGVAWLK-QQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGV 631
Score = 31.2 bits (69), Expect = 6.7, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1660 LYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGI 1719
LYGK +E+ ++ R +A+ K +Q +D R+G+ G + Y T+ L +A++ A G+
Sbjct: 574 LYGKQ-GTVEVADQLRGVAWLK-QQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGV 631
>pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate
Deaminase, Mutant R115e
Length = 193
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 95 HAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIY 143
HAE+ A+ A++ N + +YVTL PC CA AI + +++Y
Sbjct: 104 HAELNAILFAAE---NGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVY 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,680,415
Number of Sequences: 62578
Number of extensions: 2955914
Number of successful extensions: 6655
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 6365
Number of HSP's gapped (non-prelim): 208
length of query: 2492
length of database: 14,973,337
effective HSP length: 115
effective length of query: 2377
effective length of database: 7,776,867
effective search space: 18485612859
effective search space used: 18485612859
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)