Query psy15223
Match_columns 2492
No_of_seqs 1312 out of 8924
Neff 7.9
Searched_HMMs 46136
Date Sat Aug 17 00:25:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0060 IleS Isoleucyl-tRNA sy 100.0 4E-204 8E-209 1979.0 71.4 867 438-1339 35-931 (933)
2 COG0060 IleS Isoleucyl-tRNA sy 100.0 3E-196 7E-201 1904.1 71.4 890 1566-2490 14-932 (933)
3 KOG0433|consensus 100.0 6E-184 1E-188 1659.0 60.9 852 445-1338 54-933 (937)
4 PLN02843 isoleucyl-tRNA synthe 100.0 1E-180 3E-185 1849.5 87.6 885 438-1347 20-972 (974)
5 PRK13804 ileS isoleucyl-tRNA s 100.0 7E-180 1E-184 1845.0 89.7 871 438-1338 41-953 (961)
6 PRK05743 ileS isoleucyl-tRNA s 100.0 1E-179 3E-184 1841.6 87.5 863 438-1337 36-910 (912)
7 PRK05743 ileS isoleucyl-tRNA s 100.0 6E-179 1E-183 1835.0 87.2 885 1567-2488 16-911 (912)
8 PRK13804 ileS isoleucyl-tRNA s 100.0 2E-178 4E-183 1831.0 89.6 894 1567-2489 21-954 (961)
9 PLN02843 isoleucyl-tRNA synthe 100.0 1E-177 2E-182 1821.0 88.0 896 1568-2489 1-964 (974)
10 KOG0433|consensus 100.0 3E-171 6E-176 1548.3 59.6 873 1567-2489 27-934 (937)
11 PTZ00427 isoleucine-tRNA ligas 100.0 2E-158 5E-163 1628.4 81.2 883 1552-2454 50-1030(1205)
12 PLN02882 aminoacyl-tRNA ligase 100.0 3E-158 7E-163 1639.0 81.9 837 438-1306 25-907 (1159)
13 PTZ00427 isoleucine-tRNA ligas 100.0 1E-157 2E-162 1622.2 81.8 849 438-1306 89-1032(1205)
14 PLN02882 aminoacyl-tRNA ligase 100.0 1E-157 3E-162 1633.3 81.1 841 1569-2442 7-894 (1159)
15 COG0525 ValS Valyl-tRNA synthe 100.0 1E-157 3E-162 1518.7 70.6 768 1569-2442 4-784 (877)
16 PRK06039 ileS isoleucyl-tRNA s 100.0 2E-155 3E-160 1615.4 77.5 821 1568-2438 9-857 (975)
17 PRK06039 ileS isoleucyl-tRNA s 100.0 9E-154 2E-158 1597.7 78.9 801 438-1287 28-856 (975)
18 COG0525 ValS Valyl-tRNA synthe 100.0 1E-152 3E-157 1472.7 70.9 738 450-1291 33-783 (877)
19 TIGR00392 ileS isoleucyl-tRNA 100.0 1E-151 3E-156 1577.1 76.1 799 1567-2401 3-838 (861)
20 TIGR00392 ileS isoleucyl-tRNA 100.0 7E-151 2E-155 1569.4 76.3 792 438-1261 23-859 (861)
21 PLN02381 valyl-tRNA synthetase 100.0 1E-147 3E-152 1527.1 70.7 791 1569-2440 99-963 (1066)
22 PTZ00419 valyl-tRNA synthetase 100.0 3E-146 7E-151 1531.5 72.4 792 1568-2440 26-893 (995)
23 PLN02381 valyl-tRNA synthetase 100.0 4E-145 9E-150 1501.9 71.4 766 446-1290 124-963 (1066)
24 PRK05729 valS valyl-tRNA synth 100.0 6E-145 1E-149 1503.5 71.9 760 1569-2441 8-780 (874)
25 PLN02943 aminoacyl-tRNA ligase 100.0 1E-144 3E-149 1493.8 72.5 767 1569-2440 60-856 (958)
26 PRK14900 valS valyl-tRNA synth 100.0 5E-144 1E-148 1496.7 71.2 771 1569-2441 18-810 (1052)
27 PTZ00419 valyl-tRNA synthetase 100.0 1E-143 3E-148 1505.1 72.3 764 446-1290 56-893 (995)
28 TIGR00422 valS valyl-tRNA synt 100.0 6E-143 1E-147 1487.2 76.2 771 1569-2442 4-787 (861)
29 PLN02943 aminoacyl-tRNA ligase 100.0 2E-142 3E-147 1473.5 72.8 737 447-1285 85-849 (958)
30 PRK05729 valS valyl-tRNA synth 100.0 2E-142 4E-147 1478.7 73.4 732 449-1290 35-779 (874)
31 PRK14900 valS valyl-tRNA synth 100.0 8E-142 2E-146 1474.9 71.4 744 446-1290 44-809 (1052)
32 PRK13208 valS valyl-tRNA synth 100.0 6E-141 1E-145 1456.9 74.1 775 1568-2443 8-791 (800)
33 TIGR00422 valS valyl-tRNA synt 100.0 2E-139 4E-144 1452.3 75.6 744 447-1291 30-786 (861)
34 PRK13208 valS valyl-tRNA synth 100.0 4E-138 8E-143 1429.2 75.5 747 448-1293 36-791 (800)
35 PLN02959 aminoacyl-tRNA ligase 100.0 1E-134 3E-139 1402.6 72.8 788 1567-2416 10-950 (1084)
36 KOG0434|consensus 100.0 7E-136 1E-140 1220.8 50.9 825 440-1302 27-892 (1070)
37 KOG0434|consensus 100.0 7E-136 2E-140 1220.5 49.4 848 1569-2454 7-894 (1070)
38 KOG0432|consensus 100.0 2E-133 5E-138 1245.8 62.5 795 1567-2444 43-901 (995)
39 PLN02959 aminoacyl-tRNA ligase 100.0 6E-132 1E-136 1376.3 73.9 756 448-1267 43-951 (1084)
40 PF00133 tRNA-synt_1: tRNA syn 100.0 1E-133 2E-138 1340.0 45.3 580 437-1057 9-601 (601)
41 PF00133 tRNA-synt_1: tRNA syn 100.0 1E-133 3E-138 1339.6 44.6 589 1578-2207 1-601 (601)
42 TIGR00395 leuS_arch leucyl-tRN 100.0 2E-127 4E-132 1326.7 69.5 754 1574-2415 2-833 (938)
43 KOG0432|consensus 100.0 3E-127 6E-132 1191.5 60.0 764 448-1293 73-900 (995)
44 PRK12300 leuS leucyl-tRNA synt 100.0 2E-126 4E-131 1312.2 68.2 718 1615-2414 1-786 (897)
45 PRK12300 leuS leucyl-tRNA synt 100.0 4E-126 8E-131 1308.9 71.1 721 465-1265 1-787 (897)
46 TIGR00395 leuS_arch leucyl-tRN 100.0 7E-123 1E-127 1281.6 71.0 730 448-1265 23-833 (938)
47 TIGR00396 leuS_bact leucyl-tRN 100.0 2E-120 3E-125 1240.8 53.6 667 1570-2367 1-774 (842)
48 PLN02563 aminoacyl-tRNA ligase 100.0 3E-120 5E-125 1232.9 51.1 688 1555-2367 65-889 (963)
49 PRK00390 leuS leucyl-tRNA synt 100.0 1E-119 3E-124 1231.7 56.6 666 1568-2367 3-737 (805)
50 PRK00390 leuS leucyl-tRNA synt 100.0 5E-117 1E-121 1205.9 49.3 633 450-1216 32-736 (805)
51 TIGR00396 leuS_bact leucyl-tRN 100.0 3E-116 6E-121 1199.2 53.5 639 446-1216 25-773 (842)
52 PLN02563 aminoacyl-tRNA ligase 100.0 3E-114 6E-119 1173.9 51.2 647 446-1216 106-888 (963)
53 COG0495 LeuS Leucyl-tRNA synth 100.0 4E-102 8E-107 1013.1 44.0 671 1569-2369 4-749 (814)
54 KOG0435|consensus 100.0 3.7E-98 8E-103 902.2 34.5 664 1574-2368 34-797 (876)
55 COG0495 LeuS Leucyl-tRNA synth 100.0 8.6E-90 1.9E-94 897.1 45.1 641 450-1218 34-748 (814)
56 KOG0437|consensus 100.0 2.3E-87 4.9E-92 810.6 41.0 806 1571-2434 13-955 (1080)
57 KOG0435|consensus 100.0 3.4E-87 7.3E-92 807.3 31.1 640 446-1217 54-796 (876)
58 KOG0437|consensus 100.0 1.9E-77 4.1E-82 724.5 41.2 784 446-1288 40-959 (1080)
59 cd00817 ValRS_core catalytic c 100.0 1E-77 2.3E-82 761.0 32.9 370 450-1056 1-382 (382)
60 cd00817 ValRS_core catalytic c 100.0 2.8E-76 6E-81 748.0 32.5 370 1600-2206 1-382 (382)
61 PRK12268 methionyl-tRNA synthe 100.0 8.3E-75 1.8E-79 776.7 36.5 498 450-1214 3-520 (556)
62 PRK12268 methionyl-tRNA synthe 100.0 2.9E-74 6.3E-79 771.4 37.4 500 1600-2365 3-521 (556)
63 TIGR00398 metG methionyl-tRNA 100.0 5.7E-73 1.2E-77 754.8 38.0 484 452-1196 1-503 (530)
64 TIGR00398 metG methionyl-tRNA 100.0 6.8E-72 1.5E-76 744.4 39.2 484 1602-2346 1-503 (530)
65 PRK12267 methionyl-tRNA synthe 100.0 1.6E-71 3.5E-76 752.3 39.9 461 449-1196 3-478 (648)
66 PRK12267 methionyl-tRNA synthe 100.0 1.6E-70 3.4E-75 742.7 39.9 462 1599-2346 3-478 (648)
67 PLN02610 probable methionyl-tR 100.0 3.6E-70 7.9E-75 734.5 39.9 498 445-1196 12-532 (801)
68 PLN02610 probable methionyl-tR 100.0 7.9E-70 1.7E-74 731.3 41.0 496 1597-2346 14-532 (801)
69 PLN02224 methionine-tRNA ligas 100.0 2.2E-69 4.8E-74 707.0 40.5 464 447-1196 66-546 (616)
70 PRK00133 metG methionyl-tRNA s 100.0 2.4E-69 5.3E-74 730.4 39.8 482 450-1196 2-503 (673)
71 PRK11893 methionyl-tRNA synthe 100.0 3.1E-69 6.6E-74 719.9 39.6 458 450-1196 1-476 (511)
72 PLN02224 methionine-tRNA ligas 100.0 1.3E-68 2.8E-73 699.7 40.4 463 1598-2346 67-546 (616)
73 PRK00133 metG methionyl-tRNA s 100.0 8.8E-69 1.9E-73 724.9 39.9 481 1600-2346 2-503 (673)
74 PRK11893 methionyl-tRNA synthe 100.0 3.9E-68 8.5E-73 709.2 40.3 458 1600-2346 1-476 (511)
75 cd00818 IleRS_core catalytic c 100.0 1.3E-68 2.9E-73 667.0 32.1 327 450-1056 1-338 (338)
76 cd00818 IleRS_core catalytic c 100.0 2.7E-67 5.9E-72 655.3 31.0 327 1600-2206 1-338 (338)
77 COG0143 MetG Methionyl-tRNA sy 100.0 8.9E-66 1.9E-70 655.2 37.4 488 1599-2347 4-513 (558)
78 COG0143 MetG Methionyl-tRNA sy 100.0 1.1E-65 2.4E-70 654.3 37.9 487 449-1196 4-512 (558)
79 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.5E-58 3.3E-63 575.4 28.5 305 451-1056 1-312 (312)
80 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.4E-57 3.1E-62 566.7 27.9 305 1601-2206 1-312 (312)
81 KOG0436|consensus 100.0 4.7E-55 1E-59 503.7 34.1 468 448-1196 37-527 (578)
82 KOG0436|consensus 100.0 8.7E-54 1.9E-58 493.2 33.2 469 1598-2347 37-528 (578)
83 cd00814 MetRS_core catalytic c 100.0 3.3E-51 7.2E-56 509.4 25.6 306 451-1056 1-319 (319)
84 PF09334 tRNA-synt_1g: tRNA sy 100.0 1.1E-51 2.5E-56 520.9 18.6 360 1602-2216 1-376 (391)
85 PF09334 tRNA-synt_1g: tRNA sy 100.0 1.2E-51 2.7E-56 520.6 18.8 360 452-1066 1-376 (391)
86 cd00814 MetRS_core catalytic c 100.0 1.1E-50 2.5E-55 504.6 25.8 306 1601-2206 1-319 (319)
87 cd00812 LeuRS_core catalytic c 100.0 1.2E-50 2.5E-55 502.2 20.7 295 1601-2208 1-314 (314)
88 cd00812 LeuRS_core catalytic c 100.0 1.6E-50 3.4E-55 501.1 20.8 294 451-1057 1-313 (314)
89 COG1385 Uncharacterized protei 100.0 6.7E-49 1.4E-53 458.7 20.4 239 202-441 1-245 (246)
90 TIGR00046 RNA methyltransferas 100.0 7.8E-46 1.7E-50 439.8 22.6 236 203-442 1-239 (240)
91 PF04452 Methyltrans_RNA: RNA 100.0 5E-45 1.1E-49 430.2 19.1 220 219-438 1-225 (225)
92 PRK11713 16S ribosomal RNA met 100.0 7.5E-44 1.6E-48 421.8 21.3 229 204-441 1-231 (234)
93 KOG1247|consensus 100.0 5.5E-38 1.2E-42 362.3 17.5 493 445-1196 9-520 (567)
94 PRK00260 cysS cysteinyl-tRNA s 100.0 1.2E-36 2.6E-41 394.1 29.9 156 2120-2295 219-375 (463)
95 KOG1247|consensus 100.0 1.3E-37 2.9E-42 359.1 18.6 488 1597-2346 11-520 (567)
96 PRK00260 cysS cysteinyl-tRNA s 100.0 3.3E-36 7.2E-41 390.0 29.0 155 971-1145 220-375 (463)
97 COG1385 Uncharacterized protei 100.0 3.8E-35 8.2E-40 343.3 13.8 165 1407-1572 76-244 (246)
98 PTZ00399 cysteinyl-tRNA-synthe 100.0 1.1E-32 2.3E-37 365.0 29.9 169 970-1145 267-437 (651)
99 PTZ00399 cysteinyl-tRNA-synthe 100.0 1.9E-32 4E-37 362.7 31.8 169 2120-2295 267-437 (651)
100 PF04452 Methyltrans_RNA: RNA 100.0 4.5E-34 9.7E-39 337.3 13.7 164 1407-1570 59-225 (225)
101 TIGR00435 cysS cysteinyl-tRNA 100.0 1.8E-32 3.8E-37 353.7 27.1 154 2120-2286 218-372 (465)
102 TIGR00046 RNA methyltransferas 100.0 3E-33 6.5E-38 332.3 16.4 163 1406-1571 73-236 (240)
103 TIGR03447 mycothiol_MshC cyste 100.0 2E-32 4.4E-37 339.0 23.0 140 2121-2285 241-382 (411)
104 TIGR03447 mycothiol_MshC cyste 100.0 2.4E-32 5.3E-37 338.3 23.5 140 971-1135 241-382 (411)
105 PRK12418 cysteinyl-tRNA synthe 100.0 5.1E-32 1.1E-36 334.9 24.6 147 2121-2294 214-362 (384)
106 PRK12418 cysteinyl-tRNA synthe 100.0 5.6E-32 1.2E-36 334.5 24.2 147 971-1144 214-362 (384)
107 TIGR00435 cysS cysteinyl-tRNA 100.0 4.2E-31 9E-36 341.0 28.3 153 971-1136 219-372 (465)
108 PRK11713 16S ribosomal RNA met 100.0 1.1E-31 2.5E-36 318.0 14.9 159 1406-1571 71-229 (234)
109 PRK10860 tRNA-specific adenosi 100.0 9.5E-32 2.1E-36 297.7 12.4 147 46-193 13-159 (172)
110 PLN02946 cysteine-tRNA ligase 100.0 1.4E-29 3E-34 324.2 27.3 165 971-1145 277-443 (557)
111 PLN02946 cysteine-tRNA ligase 100.0 1.8E-29 4E-34 323.0 27.1 165 2121-2295 277-443 (557)
112 COG0590 CumB Cytosine/adenosin 100.0 4.4E-31 9.5E-36 287.8 10.4 148 41-189 3-151 (152)
113 PRK14535 cysS cysteinyl-tRNA s 100.0 1.5E-29 3.2E-34 322.6 25.7 147 2121-2286 446-608 (699)
114 PRK14536 cysS cysteinyl-tRNA s 100.0 1.5E-29 3.3E-34 321.4 25.8 165 2121-2286 233-400 (490)
115 PRK14535 cysS cysteinyl-tRNA s 100.0 1.6E-29 3.5E-34 322.3 24.9 147 971-1136 446-608 (699)
116 PRK14536 cysS cysteinyl-tRNA s 100.0 4.1E-29 8.9E-34 317.6 25.4 164 972-1136 234-400 (490)
117 PRK14534 cysS cysteinyl-tRNA s 99.9 1.2E-26 2.7E-31 293.1 26.1 159 2121-2286 233-393 (481)
118 PRK14534 cysS cysteinyl-tRNA s 99.9 4.8E-26 1E-30 287.8 25.0 159 971-1136 233-393 (481)
119 cd00672 CysRS_core catalytic c 99.9 6.4E-27 1.4E-31 271.0 15.4 86 2121-2207 128-213 (213)
120 cd00672 CysRS_core catalytic c 99.9 9.5E-27 2.1E-31 269.6 15.9 86 971-1057 128-213 (213)
121 PRK01611 argS arginyl-tRNA syn 99.9 1.7E-24 3.6E-29 285.5 36.6 196 974-1181 276-501 (507)
122 COG0215 CysS Cysteinyl-tRNA sy 99.9 6.1E-25 1.3E-29 270.0 23.9 147 2122-2286 222-369 (464)
123 COG0215 CysS Cysteinyl-tRNA sy 99.9 1.3E-24 2.8E-29 267.1 23.4 147 972-1136 222-369 (464)
124 PRK01611 argS arginyl-tRNA syn 99.9 1.1E-23 2.5E-28 277.7 32.7 195 2124-2330 276-500 (507)
125 PRK10786 ribD bifunctional dia 99.9 1.3E-24 2.9E-29 272.7 14.0 182 45-245 2-195 (367)
126 PLN02807 diaminohydroxyphospho 99.9 2E-24 4.3E-29 268.9 13.3 178 43-243 29-218 (380)
127 COG0117 RibD Pyrimidine deamin 99.9 1.5E-24 3.3E-29 222.9 8.9 135 43-191 3-145 (146)
128 cd00674 LysRS_core_class_I cat 99.9 4.3E-23 9.4E-28 253.6 20.4 122 448-576 17-149 (353)
129 cd00674 LysRS_core_class_I cat 99.9 4.6E-23 1E-27 253.4 20.4 122 1598-1726 17-149 (353)
130 TIGR00326 eubact_ribD riboflav 99.9 1.7E-23 3.7E-28 263.1 15.1 175 50-243 1-187 (344)
131 cd07960 Anticodon_Ia_Ile_BEm A 99.9 5.5E-22 1.2E-26 227.8 20.1 179 1056-1238 1-179 (180)
132 cd01285 nucleoside_deaminase N 99.9 8.2E-23 1.8E-27 212.9 9.9 105 50-155 1-106 (109)
133 cd07960 Anticodon_Ia_Ile_BEm A 99.9 1.3E-21 2.9E-26 224.6 20.5 179 2206-2388 1-179 (180)
134 PF01406 tRNA-synt_1e: tRNA sy 99.9 9.4E-23 2E-27 240.1 9.3 126 448-588 7-133 (300)
135 PF01406 tRNA-synt_1e: tRNA sy 99.9 2.8E-22 6E-27 236.2 12.5 126 1598-1738 7-133 (300)
136 cd07961 Anticodon_Ia_Ile_ABEc 99.9 1.8E-21 4E-26 224.1 19.1 178 1056-1237 1-181 (183)
137 PHA02588 cd deoxycytidylate de 99.9 2.6E-22 5.6E-27 222.3 10.8 130 45-185 2-163 (168)
138 KOG2007|consensus 99.9 2.8E-20 6.1E-25 222.9 27.1 171 2122-2300 259-430 (586)
139 cd01284 Riboflavin_deaminase-r 99.9 5.7E-22 1.2E-26 205.7 10.2 106 50-164 1-115 (115)
140 cd07961 Anticodon_Ia_Ile_ABEc 99.9 7E-21 1.5E-25 219.3 19.9 174 2206-2383 1-177 (183)
141 KOG1018|consensus 99.9 3.9E-22 8.5E-27 218.0 7.8 154 41-195 6-166 (169)
142 TIGR02571 ComEB ComE operon pr 99.9 8.2E-22 1.8E-26 214.1 8.9 118 44-168 4-136 (151)
143 KOG2007|consensus 99.9 1.1E-19 2.3E-24 218.0 27.4 173 972-1152 259-432 (586)
144 PRK00750 lysK lysyl-tRNA synth 99.8 1.8E-20 3.8E-25 244.5 15.4 101 2121-2225 234-336 (510)
145 PRK00750 lysK lysyl-tRNA synth 99.8 4E-20 8.7E-25 241.2 17.1 101 971-1075 234-336 (510)
146 PF13603 tRNA-synt_1_2: Leucyl 99.8 1.6E-20 3.4E-25 209.7 10.7 161 1755-1947 7-185 (185)
147 cd01286 deoxycytidylate_deamin 99.8 2.4E-20 5.3E-25 199.6 8.5 101 46-150 1-122 (131)
148 PF08264 Anticodon_1: Anticodo 99.8 2.4E-18 5.2E-23 192.9 16.6 153 1101-1261 1-153 (153)
149 PF08264 Anticodon_1: Anticodo 99.8 2.7E-18 5.8E-23 192.5 16.7 153 2251-2411 1-153 (153)
150 cd00786 cytidine_deaminase-lik 99.8 3.2E-19 6.9E-24 181.3 8.3 92 50-145 1-95 (96)
151 PF00383 dCMP_cyt_deam_1: Cyti 99.8 1.2E-19 2.5E-24 188.2 4.9 100 44-145 2-102 (102)
152 PF13603 tRNA-synt_1_2: Leucyl 99.7 1.7E-18 3.8E-23 193.4 8.9 162 604-797 6-185 (185)
153 TIGR00456 argS arginyl-tRNA sy 99.7 2.3E-16 4.9E-21 210.8 30.6 198 973-1181 330-560 (566)
154 TIGR00456 argS arginyl-tRNA sy 99.7 1.6E-15 3.6E-20 202.6 28.0 197 2123-2330 330-559 (566)
155 TIGR00467 lysS_arch lysyl-tRNA 99.7 6.2E-16 1.3E-20 199.8 21.5 102 972-1077 226-332 (515)
156 COG2131 ComEB Deoxycytidylate 99.7 5E-17 1.1E-21 173.2 7.0 121 44-168 7-149 (164)
157 COG0018 ArgS Arginyl-tRNA synt 99.7 6.6E-14 1.4E-18 182.7 35.8 200 973-1181 337-571 (577)
158 TIGR00467 lysS_arch lysyl-tRNA 99.7 2.1E-15 4.5E-20 194.9 21.3 104 2121-2227 225-332 (515)
159 PRK12451 arginyl-tRNA syntheta 99.6 1.9E-13 4.1E-18 181.9 33.7 195 973-1180 327-555 (562)
160 COG0018 ArgS Arginyl-tRNA synt 99.6 5.4E-13 1.2E-17 174.3 33.4 200 2123-2331 337-571 (577)
161 PLN02286 arginine-tRNA ligase 99.6 8E-13 1.7E-17 176.0 35.4 200 973-1181 330-570 (576)
162 PRK12451 arginyl-tRNA syntheta 99.5 4E-12 8.7E-17 169.4 33.6 195 2123-2330 327-555 (562)
163 PLN02286 arginine-tRNA ligase 99.5 1.9E-11 4.1E-16 163.0 35.6 199 2123-2330 330-569 (576)
164 KOG2771|consensus 99.5 9.3E-15 2E-19 170.4 3.7 130 49-181 170-338 (344)
165 cd07962 Anticodon_Ia_Val Antic 99.5 8.4E-13 1.8E-17 144.4 16.3 135 1056-1194 1-135 (135)
166 cd07962 Anticodon_Ia_Val Antic 99.5 1.3E-12 2.8E-17 143.0 16.7 135 2206-2344 1-135 (135)
167 cd00671 ArgRS_core catalytic c 99.4 3.1E-13 6.7E-18 159.0 12.2 123 452-589 2-124 (212)
168 COG0590 CumB Cytosine/adenosin 99.4 8.6E-14 1.9E-18 152.6 5.8 78 1328-1405 74-152 (152)
169 cd00671 ArgRS_core catalytic c 99.4 6.2E-13 1.4E-17 156.4 12.6 123 1602-1739 2-124 (212)
170 cd07959 Anticodon_Ia_Leu_AEc A 99.4 4.6E-12 1E-16 135.2 14.3 116 2206-2344 1-117 (117)
171 PRK10860 tRNA-specific adenosi 99.4 2.8E-13 6E-18 151.1 4.0 79 1331-1409 81-160 (172)
172 cd07959 Anticodon_Ia_Leu_AEc A 99.3 8.7E-12 1.9E-16 133.1 14.2 116 1056-1194 1-117 (117)
173 KOG3127|consensus 99.3 2.3E-12 5E-17 141.3 4.9 121 41-167 62-204 (230)
174 cd01283 cytidine_deaminase Cyt 99.3 9.4E-12 2E-16 131.0 7.8 91 55-149 6-103 (112)
175 cd07957 Anticodon_Ia_Met Antic 99.2 6.6E-11 1.4E-15 128.6 13.8 96 2247-2344 34-129 (129)
176 cd07957 Anticodon_Ia_Met Antic 99.2 8.3E-11 1.8E-15 127.8 14.3 96 1097-1194 34-129 (129)
177 cd07958 Anticodon_Ia_Leu_BEm A 99.2 2.1E-10 4.6E-15 122.4 13.0 117 2206-2344 1-117 (117)
178 cd07958 Anticodon_Ia_Leu_BEm A 99.2 2.6E-10 5.6E-15 121.7 12.9 117 1056-1194 1-117 (117)
179 KOG2771|consensus 99.0 6.6E-11 1.4E-15 138.7 2.7 71 1326-1396 267-338 (344)
180 PF00750 tRNA-synt_1d: tRNA sy 99.0 3.5E-09 7.6E-14 134.1 15.7 61 447-507 17-77 (354)
181 cd00802 class_I_aaRS_core cata 98.9 2.7E-09 5.9E-14 118.0 8.2 76 1605-1690 2-77 (143)
182 cd00802 class_I_aaRS_core cata 98.9 3.5E-09 7.7E-14 117.1 8.1 76 455-540 2-77 (143)
183 PF00750 tRNA-synt_1d: tRNA sy 98.8 4.2E-08 9.1E-13 124.4 17.7 60 1598-1657 18-77 (354)
184 PRK14719 bifunctional RNAse/5- 98.8 2.1E-08 4.6E-13 125.4 11.0 118 115-244 44-186 (360)
185 cd07375 Anticodon_Ia_like Anti 98.8 7.5E-08 1.6E-12 102.5 13.6 116 1059-1183 2-117 (117)
186 cd07375 Anticodon_Ia_like Anti 98.7 1.1E-07 2.4E-12 101.3 13.8 116 2209-2333 2-117 (117)
187 PF14439 Bd3614-deam: Bd3614-l 98.6 1E-07 2.2E-12 93.8 8.9 83 66-150 8-118 (136)
188 COG1384 LysS Lysyl-tRNA synthe 98.6 1.2E-06 2.7E-11 109.6 18.0 95 450-546 19-123 (521)
189 COG1384 LysS Lysyl-tRNA synthe 98.5 4.9E-07 1.1E-11 113.1 13.4 95 1600-1696 19-123 (521)
190 KOG1018|consensus 98.5 1.1E-07 2.5E-12 105.1 4.7 77 1330-1406 83-162 (169)
191 COG0084 TatD Mg-dependent DNas 98.4 2E-07 4.4E-12 110.9 4.9 57 1-57 160-216 (256)
192 TIGR00326 eubact_ribD riboflav 98.3 3.9E-07 8.5E-12 115.6 5.2 89 1331-1423 58-155 (344)
193 PRK10786 ribD bifunctional dia 98.3 5.4E-07 1.2E-11 114.4 5.4 89 1331-1423 64-161 (367)
194 cd01285 nucleoside_deaminase N 98.2 3.8E-07 8.1E-12 95.6 1.8 45 1328-1372 63-108 (109)
195 PLN02807 diaminohydroxyphospho 98.2 1.5E-06 3.2E-11 109.9 4.8 89 1331-1423 93-190 (380)
196 TIGR01354 cyt_deam_tetra cytid 98.0 1.4E-05 2.9E-10 85.9 7.8 81 54-137 8-94 (127)
197 PF01921 tRNA-synt_1f: tRNA sy 97.8 1.9E-05 4.1E-10 97.2 6.5 104 2120-2225 233-340 (360)
198 PRK11449 putative deoxyribonuc 97.8 1.5E-05 3.2E-10 96.9 5.3 54 1-54 162-215 (258)
199 PF01921 tRNA-synt_1f: tRNA sy 97.6 5.2E-05 1.1E-09 93.5 5.9 103 971-1075 234-340 (360)
200 PRK10425 DNase TatD; Provision 97.6 4.7E-05 1E-09 92.4 4.6 54 1-54 157-211 (258)
201 PRK10812 putative DNAse; Provi 97.6 6.6E-05 1.4E-09 91.6 5.0 54 1-54 160-213 (265)
202 cd09287 GluRS_non_core catalyt 97.4 0.00025 5.5E-09 83.6 6.8 93 1606-1728 5-97 (240)
203 cd01284 Riboflavin_deaminase-r 97.4 4.4E-05 9.5E-10 80.2 0.2 44 1331-1374 60-110 (115)
204 PF06827 zf-FPG_IleRS: Zinc fi 97.3 3.1E-05 6.7E-10 60.6 -1.3 30 1307-1336 1-30 (30)
205 PHA02588 cd deoxycytidylate de 97.3 0.00011 2.5E-09 82.5 2.2 63 1330-1399 99-162 (168)
206 PRK04156 gltX glutamyl-tRNA sy 97.3 0.00038 8.2E-09 91.6 6.9 97 1603-1729 102-198 (567)
207 PF01026 TatD_DNase: TatD rela 97.2 0.00033 7.2E-09 85.6 4.7 52 1-52 160-211 (255)
208 cd09287 GluRS_non_core catalyt 97.1 0.00076 1.7E-08 79.6 7.1 92 457-578 6-97 (240)
209 PRK04156 gltX glutamyl-tRNA sy 97.1 0.00076 1.7E-08 88.8 7.3 96 453-578 102-197 (567)
210 PF06827 zf-FPG_IleRS: Zinc fi 97.1 4.3E-05 9.3E-10 59.8 -2.9 30 2457-2486 1-30 (30)
211 TIGR00463 gltX_arch glutamyl-t 97.0 0.001 2.3E-08 87.5 7.5 96 1602-1729 93-188 (560)
212 PRK12558 glutamyl-tRNA synthet 97.0 0.0014 3.1E-08 84.4 8.4 91 456-578 6-96 (445)
213 COG0117 RibD Pyrimidine deamin 96.9 0.00055 1.2E-08 72.5 3.0 69 1334-1406 71-145 (146)
214 PF00383 dCMP_cyt_deam_1: Cyti 96.8 0.00038 8.3E-09 72.3 1.1 26 1335-1360 77-102 (102)
215 PRK12558 glutamyl-tRNA synthet 96.7 0.0038 8.2E-08 80.5 9.1 92 1605-1728 5-96 (445)
216 PTZ00402 glutamyl-tRNA synthet 96.7 0.0026 5.7E-08 83.6 7.7 93 1603-1727 53-146 (601)
217 PLN03233 putative glutamate-tR 96.7 0.0026 5.6E-08 82.9 7.5 95 1603-1729 12-106 (523)
218 cd00786 cytidine_deaminase-lik 96.7 0.00057 1.2E-08 70.0 1.2 27 1334-1360 69-95 (96)
219 cd01286 deoxycytidylate_deamin 96.7 0.00072 1.6E-08 73.3 1.9 34 1331-1364 87-121 (131)
220 PRK06848 hypothetical protein; 96.7 0.002 4.3E-08 70.0 5.1 85 49-137 10-108 (139)
221 TIGR02571 ComEB ComE operon pr 96.7 0.00092 2E-08 73.8 2.4 31 1331-1361 86-117 (151)
222 cd00807 GlnRS_core catalytic c 96.6 0.0039 8.4E-08 73.5 7.4 92 1605-1728 4-95 (238)
223 PTZ00402 glutamyl-tRNA synthet 96.6 0.0039 8.5E-08 82.1 8.2 93 453-577 53-146 (601)
224 TIGR00463 gltX_arch glutamyl-t 96.6 0.0036 7.9E-08 82.5 7.6 96 452-579 93-188 (560)
225 PLN03233 putative glutamate-tR 96.5 0.0047 1E-07 80.6 7.9 95 453-579 12-106 (523)
226 TIGR00440 glnS glutaminyl-tRNA 96.5 0.0051 1.1E-07 80.4 8.1 93 1605-1729 3-96 (522)
227 PTZ00437 glutaminyl-tRNA synth 96.5 0.0026 5.7E-08 82.8 5.4 95 453-579 52-146 (574)
228 PLN02907 glutamate-tRNA ligase 96.5 0.0041 8.8E-08 85.3 7.4 94 1603-1728 214-307 (722)
229 cd00807 GlnRS_core catalytic c 96.5 0.0026 5.7E-08 74.9 4.8 92 455-578 4-95 (238)
230 PTZ00437 glutaminyl-tRNA synth 96.5 0.0061 1.3E-07 79.6 8.3 95 1603-1729 52-146 (574)
231 TIGR03838 queuosine_YadB gluta 96.4 0.0061 1.3E-07 73.9 7.6 90 458-579 6-96 (272)
232 KOG3020|consensus 96.3 0.0025 5.3E-08 76.9 3.5 51 1-53 185-235 (296)
233 PRK05347 glutaminyl-tRNA synth 96.3 0.0073 1.6E-07 79.1 7.6 93 1603-1729 30-125 (554)
234 COG0008 GlnS Glutamyl- and glu 96.3 0.0057 1.2E-07 79.4 6.6 95 1603-1729 10-105 (472)
235 PRK12410 glutamylglutaminyl-tR 96.2 0.0071 1.5E-07 77.7 7.1 90 458-579 5-94 (433)
236 PF00749 tRNA-synt_1c: tRNA sy 96.2 0.012 2.7E-07 73.5 9.1 91 1607-1729 6-97 (314)
237 PLN02907 glutamate-tRNA ligase 96.2 0.0083 1.8E-07 82.3 8.1 94 453-578 214-307 (722)
238 PRK01406 gltX glutamyl-tRNA sy 96.2 0.0098 2.1E-07 78.4 8.4 93 454-578 6-106 (476)
239 PF00749 tRNA-synt_1c: tRNA sy 96.2 0.0079 1.7E-07 75.3 7.2 90 458-579 7-97 (314)
240 PLN02627 glutamyl-tRNA synthet 96.2 0.019 4.1E-07 75.1 10.8 94 453-578 46-148 (535)
241 TIGR03838 queuosine_YadB gluta 96.2 0.013 2.9E-07 71.1 8.8 91 1607-1729 5-96 (272)
242 PRK05710 glutamyl-Q tRNA(Asp) 96.2 0.0099 2.1E-07 73.0 7.5 93 454-578 7-100 (299)
243 PLN02859 glutamine-tRNA ligase 96.1 0.0093 2E-07 80.5 7.6 95 1603-1729 265-359 (788)
244 PRK05347 glutaminyl-tRNA synth 96.1 0.0051 1.1E-07 80.4 5.0 93 453-579 30-125 (554)
245 TIGR00440 glnS glutaminyl-tRNA 96.1 0.013 2.8E-07 76.7 8.4 92 456-579 4-96 (522)
246 PRK01406 gltX glutamyl-tRNA sy 96.1 0.012 2.5E-07 77.7 8.1 94 1603-1728 5-106 (476)
247 COG0295 Cdd Cytidine deaminase 96.1 0.02 4.3E-07 61.0 8.2 78 63-145 23-108 (134)
248 COG0008 GlnS Glutamyl- and glu 96.0 0.01 2.3E-07 77.0 6.9 95 453-579 10-105 (472)
249 PRK14895 gltX glutamyl-tRNA sy 96.0 0.016 3.4E-07 75.8 8.3 94 1604-1729 6-100 (513)
250 PRK14895 gltX glutamyl-tRNA sy 95.9 0.018 3.9E-07 75.2 8.5 93 455-579 7-100 (513)
251 PRK12410 glutamylglutaminyl-tR 95.8 0.0069 1.5E-07 77.8 4.3 90 1608-1729 5-94 (433)
252 TIGR00464 gltX_bact glutamyl-t 95.8 0.015 3.3E-07 76.6 7.5 92 1606-1729 5-97 (470)
253 PRK12411 cytidine deaminase; P 95.8 0.029 6.3E-07 60.7 8.1 79 54-137 11-97 (132)
254 TIGR00464 gltX_bact glutamyl-t 95.8 0.02 4.2E-07 75.6 8.2 91 457-579 6-97 (470)
255 PLN02859 glutamine-tRNA ligase 95.8 0.0082 1.8E-07 81.0 4.7 95 453-579 265-359 (788)
256 PLN02627 glutamyl-tRNA synthet 95.8 0.037 7.9E-07 72.6 10.4 94 1603-1728 46-148 (535)
257 PRK05710 glutamyl-Q tRNA(Asp) 95.7 0.027 6E-07 69.2 8.4 94 1603-1728 6-100 (299)
258 cd00418 GlxRS_core catalytic c 95.7 0.033 7.2E-07 65.9 8.8 88 1605-1724 4-92 (230)
259 PRK14703 glutaminyl-tRNA synth 95.6 0.018 3.8E-07 78.9 6.7 97 1602-1730 31-128 (771)
260 cd00418 GlxRS_core catalytic c 95.6 0.022 4.9E-07 67.3 6.7 86 457-574 6-92 (230)
261 PRK05578 cytidine deaminase; V 95.5 0.056 1.2E-06 58.4 8.8 69 64-137 22-97 (131)
262 cd07956 Anticodon_Ia_Arg Antic 95.3 0.21 4.6E-06 56.3 13.4 137 2185-2329 2-148 (156)
263 PRK14703 glutaminyl-tRNA synth 95.2 0.013 2.8E-07 80.2 3.5 95 453-579 32-127 (771)
264 cd00808 GluRS_core catalytic c 95.1 0.062 1.3E-06 64.2 8.4 88 1605-1724 4-100 (239)
265 PRK08298 cytidine deaminase; V 94.9 0.028 6E-07 60.9 4.5 69 67-139 24-102 (136)
266 TIGR01355 cyt_deam_dimer cytid 94.8 0.055 1.2E-06 65.4 7.1 84 49-137 25-112 (283)
267 cd07956 Anticodon_Ia_Arg Antic 94.7 0.27 5.9E-06 55.4 12.2 138 1035-1180 2-149 (156)
268 KOG0833|consensus 94.7 0.056 1.2E-06 59.3 6.1 72 64-139 40-118 (173)
269 cd00808 GluRS_core catalytic c 94.6 0.1 2.2E-06 62.3 8.6 86 457-574 6-100 (239)
270 PLN02402 cytidine deaminase 94.4 0.073 1.6E-06 64.6 6.9 69 64-137 44-115 (303)
271 PRK05912 tyrosyl-tRNA syntheta 93.9 0.089 1.9E-06 68.3 6.6 73 970-1047 187-259 (408)
272 cd00395 Tyr_Trp_RS_core cataly 93.8 0.15 3.3E-06 62.6 8.1 58 970-1029 152-209 (273)
273 PRK13354 tyrosyl-tRNA syntheta 93.7 0.052 1.1E-06 70.3 4.2 59 970-1031 185-243 (410)
274 PRK05912 tyrosyl-tRNA syntheta 93.5 0.13 2.7E-06 66.9 7.1 73 2120-2197 187-259 (408)
275 PRK13354 tyrosyl-tRNA syntheta 93.2 0.069 1.5E-06 69.2 3.9 72 2120-2196 185-256 (410)
276 PRK09027 cytidine deaminase; P 93.1 0.21 4.6E-06 60.9 7.6 69 64-137 69-140 (295)
277 cd00395 Tyr_Trp_RS_core cataly 92.8 0.14 3E-06 63.0 5.7 72 2120-2197 152-225 (273)
278 cd00530 PTE Phosphotriesterase 92.6 0.1 2.2E-06 65.4 4.3 53 1-53 190-251 (293)
279 PRK14719 bifunctional RNAse/5- 92.5 0.11 2.4E-06 66.0 4.3 81 1337-1423 51-154 (360)
280 TIGR00233 trpS tryptophanyl-tR 92.0 0.3 6.5E-06 61.7 7.2 60 969-1031 137-206 (328)
281 cd00805 TyrRS_core catalytic c 91.9 0.14 3.1E-06 62.9 4.1 68 2122-2197 152-221 (269)
282 PLN02182 cytidine deaminase 91.8 0.51 1.1E-05 58.1 8.5 71 64-137 64-143 (339)
283 TIGR00233 trpS tryptophanyl-tR 91.7 0.36 7.7E-06 61.0 7.5 80 2120-2207 138-229 (328)
284 cd00805 TyrRS_core catalytic c 91.5 0.18 3.8E-06 62.1 4.4 54 972-1028 152-205 (269)
285 PRK09027 cytidine deaminase; P 91.4 0.25 5.5E-06 60.3 5.4 88 52-141 195-289 (295)
286 TIGR00010 hydrolase, TatD fami 90.7 0.23 5E-06 60.7 4.4 52 1-52 156-207 (252)
287 PF00579 tRNA-synt_1b: tRNA sy 90.0 0.19 4.2E-06 62.9 3.0 62 970-1032 148-213 (292)
288 PRK08560 tyrosyl-tRNA syntheta 90.0 0.27 5.8E-06 62.3 4.2 59 2120-2181 167-228 (329)
289 KOG1147|consensus 90.0 0.88 1.9E-05 57.8 8.3 99 1603-1733 201-299 (712)
290 PF14437 MafB19-deam: MafB19-l 89.8 1.9 4.1E-05 46.9 9.6 54 92-147 79-136 (146)
291 PF00579 tRNA-synt_1b: tRNA sy 89.7 0.21 4.5E-06 62.6 2.8 63 2120-2182 148-213 (292)
292 PRK08560 tyrosyl-tRNA syntheta 89.6 0.3 6.4E-06 61.9 4.1 60 970-1032 167-229 (329)
293 TIGR00234 tyrS tyrosyl-tRNA sy 89.5 0.36 7.8E-06 62.1 4.7 57 972-1031 178-234 (377)
294 PRK12556 tryptophanyl-tRNA syn 88.6 0.33 7.2E-06 61.2 3.5 59 2119-2180 147-214 (332)
295 TIGR00234 tyrS tyrosyl-tRNA sy 88.6 0.43 9.3E-06 61.4 4.5 57 2122-2181 178-234 (377)
296 KOG1147|consensus 88.4 1.5 3.3E-05 55.8 8.8 99 453-583 201-299 (712)
297 COG2131 ComEB Deoxycytidylate 88.4 0.23 5E-06 54.8 1.7 32 1332-1363 97-129 (164)
298 KOG1148|consensus 88.3 0.97 2.1E-05 58.1 7.1 95 1603-1729 249-343 (764)
299 cd01283 cytidine_deaminase Cyt 88.2 0.23 5E-06 52.6 1.5 27 1338-1364 77-103 (112)
300 PRK12556 tryptophanyl-tRNA syn 88.1 0.38 8.3E-06 60.7 3.6 58 969-1029 147-213 (332)
301 PRK02135 hypothetical protein; 87.8 5.6 0.00012 45.8 12.1 154 1389-1564 27-190 (201)
302 KOG1148|consensus 85.5 1.8 3.9E-05 55.8 7.3 99 446-578 244-342 (764)
303 KOG4426|consensus 85.4 11 0.00025 46.9 13.6 139 1003-1144 432-610 (656)
304 PRK12284 tryptophanyl-tRNA syn 85.0 0.57 1.2E-05 60.1 2.8 60 968-1030 145-214 (431)
305 PRK12282 tryptophanyl-tRNA syn 84.9 0.53 1.1E-05 59.5 2.4 60 2119-2181 140-209 (333)
306 PTZ00126 tyrosyl-tRNA syntheta 84.6 0.95 2.1E-05 58.2 4.5 70 2119-2196 208-281 (383)
307 cd00806 TrpRS_core catalytic c 84.5 0.81 1.8E-05 56.7 3.8 69 2120-2196 136-215 (280)
308 PRK12285 tryptophanyl-tRNA syn 84.4 0.57 1.2E-05 59.9 2.4 59 2120-2181 202-265 (368)
309 PRK12284 tryptophanyl-tRNA syn 84.2 0.77 1.7E-05 59.0 3.5 69 2120-2196 147-225 (431)
310 cd01310 TatD_DNAse TatD like p 84.2 1 2.2E-05 55.0 4.5 52 2-53 157-208 (251)
311 PTZ00126 tyrosyl-tRNA syntheta 84.0 1 2.3E-05 57.8 4.5 60 969-1031 208-271 (383)
312 PRK12282 tryptophanyl-tRNA syn 83.8 0.61 1.3E-05 59.0 2.4 63 969-1031 140-209 (333)
313 cd00806 TrpRS_core catalytic c 83.3 1 2.2E-05 55.9 3.9 59 970-1031 136-205 (280)
314 COG0180 TrpS Tryptophanyl-tRNA 82.7 0.85 1.8E-05 56.3 2.8 61 969-1029 143-210 (314)
315 PRK12285 tryptophanyl-tRNA syn 82.6 0.76 1.6E-05 58.8 2.5 59 970-1031 202-265 (368)
316 COG0180 TrpS Tryptophanyl-tRNA 82.3 0.87 1.9E-05 56.2 2.7 61 2120-2180 144-211 (314)
317 TIGR01355 cyt_deam_dimer cytid 82.3 2 4.3E-05 52.4 5.7 86 53-139 181-274 (283)
318 COG1901 Uncharacterized conser 82.0 12 0.00027 42.2 11.0 154 1389-1564 27-188 (197)
319 PF05746 DALR_1: DALR anticodo 81.0 11 0.00023 40.3 10.3 109 2215-2330 2-112 (119)
320 COG0162 TyrS Tyrosyl-tRNA synt 81.0 1.3 2.9E-05 56.7 3.8 53 2122-2177 181-233 (401)
321 PF04013 Methyltrn_RNA_2: Puta 80.7 11 0.00024 43.6 10.4 151 1389-1564 27-190 (199)
322 PF05746 DALR_1: DALR anticodo 79.5 13 0.00027 39.7 10.3 108 1066-1180 3-112 (119)
323 KOG1195|consensus 78.5 16 0.00034 47.2 11.7 145 1577-1726 89-275 (567)
324 PRK12283 tryptophanyl-tRNA syn 78.4 1.6 3.5E-05 55.7 3.4 25 1007-1031 253-277 (398)
325 PRK12283 tryptophanyl-tRNA syn 78.2 1.6 3.5E-05 55.7 3.3 36 2157-2197 253-288 (398)
326 PLN02486 aminoacyl-tRNA ligase 77.8 13 0.00029 47.9 11.2 89 448-560 70-159 (383)
327 KOG4426|consensus 77.5 34 0.00074 43.0 13.7 145 2149-2294 428-610 (656)
328 COG0162 TyrS Tyrosyl-tRNA synt 77.5 1.9 4.1E-05 55.4 3.6 53 972-1027 181-233 (401)
329 PRK02135 hypothetical protein; 77.4 7.2 0.00016 45.0 7.7 80 352-435 113-193 (201)
330 PRK00927 tryptophanyl-tRNA syn 76.6 1.6 3.6E-05 55.4 2.7 68 2120-2196 137-219 (333)
331 PF04013 Methyltrn_RNA_2: Puta 76.3 4.5 9.8E-05 46.6 5.8 78 353-434 113-192 (199)
332 KOG1195|consensus 76.2 16 0.00034 47.2 10.9 125 449-576 109-275 (567)
333 PRK00927 tryptophanyl-tRNA syn 76.2 1.7 3.8E-05 55.2 2.8 58 970-1031 137-209 (333)
334 KOG1149|consensus 73.4 10 0.00022 47.9 8.0 130 1606-1766 37-190 (524)
335 PF14439 Bd3614-deam: Bd3614-l 72.4 1.9 4.1E-05 44.1 1.4 38 1335-1374 81-125 (136)
336 PF08210 APOBEC_N: APOBEC-like 71.3 11 0.00023 43.9 7.3 128 65-199 23-171 (188)
337 PLN02486 aminoacyl-tRNA ligase 68.2 27 0.00058 45.2 10.7 89 1598-1710 70-159 (383)
338 PTZ00348 tyrosyl-tRNA syntheta 66.3 5.2 0.00011 54.9 4.1 60 2119-2181 173-236 (682)
339 KOG1149|consensus 65.7 18 0.00038 45.8 7.9 128 458-616 39-190 (524)
340 PTZ00348 tyrosyl-tRNA syntheta 64.2 6 0.00013 54.4 4.0 60 969-1031 173-236 (682)
341 PF14424 Toxin-deaminase: The 62.9 12 0.00026 40.8 5.3 46 92-137 72-119 (133)
342 PRK11081 tRNA guanosine-2'-O-m 60.7 27 0.0006 41.9 8.2 125 1399-1542 9-135 (229)
343 PF00588 SpoU_methylase: SpoU 56.2 16 0.00034 40.5 4.9 109 1415-1541 7-117 (142)
344 PF14431 YwqJ-deaminase: YwqJ- 54.4 12 0.00025 40.6 3.4 47 92-138 65-125 (125)
345 COG1901 Uncharacterized conser 54.0 47 0.001 37.8 7.9 89 341-433 99-189 (197)
346 PLN02402 cytidine deaminase 51.2 12 0.00026 46.1 3.1 44 64-108 211-255 (303)
347 smart00836 DALR_1 DALR anticod 50.9 2E+02 0.0044 30.7 12.3 79 1099-1181 36-116 (122)
348 KOG2623|consensus 48.1 17 0.00037 45.4 3.8 60 2120-2181 226-286 (467)
349 PF00588 SpoU_methylase: SpoU 47.2 36 0.00077 37.7 6.0 110 281-408 5-116 (142)
350 KOG2623|consensus 44.9 24 0.00053 44.1 4.4 62 969-1032 225-287 (467)
351 smart00836 DALR_1 DALR anticod 42.0 3.4E+02 0.0074 28.9 12.4 79 2248-2330 35-115 (122)
352 PRK10864 putative methyltransf 41.7 1.4E+02 0.0031 38.1 10.6 110 1411-1540 200-312 (346)
353 TIGR00185 rRNA_methyl_2 rRNA m 40.2 1.6E+02 0.0035 33.1 9.8 107 1414-1540 6-114 (153)
354 PRK11181 23S rRNA (guanosine-2 37.1 1.1E+02 0.0023 37.4 8.4 123 1399-1540 85-210 (244)
355 PF14440 XOO_2897-deam: Xantho 34.6 22 0.00048 37.8 1.6 54 93-149 45-103 (118)
356 COG4080 SpoU rRNA Methylase fa 32.4 1.4E+02 0.0031 32.4 7.0 106 1418-1539 11-118 (147)
357 PLN02886 aminoacyl-tRNA ligase 32.2 36 0.00078 43.9 3.3 15 969-983 182-196 (389)
358 KOG2144|consensus 31.9 29 0.00064 41.7 2.2 54 2119-2176 175-230 (360)
359 COG4080 SpoU rRNA Methylase fa 31.6 3.3E+02 0.0071 29.8 9.4 104 286-406 11-117 (147)
360 TIGR00185 rRNA_methyl_2 rRNA m 31.2 2.4E+02 0.0052 31.7 9.3 106 284-408 8-114 (153)
361 PRK10358 putative rRNA methyla 30.4 3.7E+02 0.008 30.5 10.6 107 1414-1540 6-114 (157)
362 PLN02886 aminoacyl-tRNA ligase 30.0 39 0.00085 43.6 3.1 14 2120-2133 183-196 (389)
363 KOG3127|consensus 28.3 25 0.00053 40.8 0.8 26 1337-1362 158-183 (230)
364 PRK11081 tRNA guanosine-2'-O-m 27.6 1.8E+02 0.0039 35.1 7.9 109 279-408 21-133 (229)
365 PRK10864 putative methyltransf 26.2 2.4E+02 0.0052 36.2 9.0 110 279-408 200-312 (346)
366 PRK01130 N-acetylmannosamine-6 25.3 1.5E+02 0.0033 35.5 6.9 37 1526-1562 176-213 (221)
367 KOG2145|consensus 24.6 55 0.0012 39.3 2.7 86 1597-1710 81-171 (397)
368 PRK15114 tRNA (cytidine/uridin 24.3 3.4E+02 0.0074 33.1 9.6 111 1413-1542 8-130 (245)
369 PRK00278 trpC indole-3-glycero 23.3 2E+02 0.0043 35.5 7.4 31 397-427 217-248 (260)
370 PF08211 dCMP_cyt_deam_2: Cyti 22.9 52 0.0011 35.4 1.9 60 48-108 35-96 (124)
371 PF09895 DUF2122: RecB-family 22.2 1.5E+02 0.0033 31.1 5.0 57 350-407 23-80 (106)
372 KOG2713|consensus 22.1 2.8E+02 0.0061 33.9 7.7 86 2120-2210 154-253 (347)
373 PRK07114 keto-hydroxyglutarate 21.1 7.1E+02 0.015 30.0 11.1 126 1409-1552 15-140 (222)
374 TIGR03128 RuMP_HxlA 3-hexulose 20.6 1.6E+02 0.0035 34.7 5.8 117 292-426 66-193 (206)
375 PF14441 OTT_1508_deam: OTT_15 20.1 1.6E+02 0.0035 32.6 5.3 45 89-137 63-107 (142)
No 1
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-204 Score=1979.01 Aligned_cols=867 Identities=45% Similarity=0.825 Sum_probs=813.5
Q ss_pred ccccccc--ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc--
Q psy15223 438 GVWGEIK--ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-- 513 (2492)
Q Consensus 438 ~ly~~~~--~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~-- 513 (2492)
.+|++++ .++++|+|+||||||||||.+|||||+|||+||||.||++|+||+|.|+|||||||||||.+|+|++|.
T Consensus 35 ~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k 114 (933)
T COG0060 35 DIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGK 114 (933)
T ss_pred hHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCc
Confidence 5788877 368899999999999999999999999999999999999999999999999999999999999999983
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCC
Q psy15223 514 ----NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 589 (2492)
Q Consensus 514 ----~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~ 589 (2492)
+++.++||++||++|.++++.|+++|+|||+++||+++|.|||++|++.++|+|++|++|||||||.|||+|||+|
T Consensus 115 ~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c 194 (933)
T COG0060 115 KDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRC 194 (933)
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCC
Q psy15223 590 KSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDP 669 (2492)
Q Consensus 590 ~taLae~Evey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~ 669 (2492)
+|||||+||||.++.||||||+|++.+.. ...+.+++||||||||||||+|||||||.+|++|+.++
T Consensus 195 ~TaLAeaEvey~d~~dpSIyV~F~v~~~~-----------~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~-- 261 (933)
T COG0060 195 ETALAEAEVEYGDVKDPSIYVKFPVKDEG-----------LDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNG-- 261 (933)
T ss_pred CcchhhhhhcccccCCceEEEEEEeccCC-----------CCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECC--
Confidence 99999999999999999999999998641 24579999999999999999999999999999999987
Q ss_pred CceeeeeHHhHHHHHHHcCCcCc-EEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHH
Q psy15223 670 PLLLILAFNLVKSCLKKFGFKGN-IIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIE 748 (2492)
Q Consensus 670 ~~~~i~a~~~~~~~~~~~~~~~~-~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~ 748 (2492)
+.||+|++++++++++.+.+.+ ++++++|++|+|++|.|||... .+++.+||+.+||||.+.|||+||+|||||+|
T Consensus 262 -~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~--~~~~~~~v~~gd~VT~d~GTG~VHtAPghGee 338 (933)
T COG0060 262 -EKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDF--VYDRAFPVILGDHVTLDDGTGLVHTAPGHGEE 338 (933)
T ss_pred -EEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccc--cccceeeEEecCeEecCCCccceecCCCCCHH
Confidence 8999999999999999998854 4599999999999999999832 33689999999999999999999999999999
Q ss_pred HHHHHHHcC-CCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeec
Q psy15223 749 DFLIFKKQN-MKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTT 827 (2492)
Q Consensus 749 D~~~~~~~~-l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t 827 (2492)
||.+|+++| + ++++|||++|+|++++|.|.|+.|.+||+.|++.|+++|.|++.++|+||||||||||+|||||+|
T Consensus 339 Dy~vg~~~g~l---~v~~pVD~~G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt 415 (933)
T COG0060 339 DYEVGKKYGLL---EVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRAT 415 (933)
T ss_pred HHHHHHHcCCc---CCccccCCCccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeec
Confidence 999999999 8 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHH
Q psy15223 828 LQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLEL 907 (2492)
Q Consensus 828 ~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~ 907 (2492)
+|||++|++ +|+++++++++|+|+|+|+++||.+||++|+||||||||+||||||+|+|++||++++.+.++
T Consensus 416 ~QWFi~v~~--------~r~~~l~~i~~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El 487 (933)
T COG0060 416 PQWFVSVDK--------LRDKMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEEL 487 (933)
T ss_pred chheeEHHH--------HHHHHHHHHhcceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEECCCCCeeccHHHH
Confidence 999999998 999999999999999999999999999999999999999999999999999999998668999
Q ss_pred HHHHHHHHhhcCCccccccCchhhcCC---CccCceecCCccccccccccccchhcccCccccCCcCe---eeeeccccc
Q psy15223 908 IELIAKKIELNGIEIWQNLDIKEFLGD---DAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPA---DLYLEGSDQ 981 (2492)
Q Consensus 908 i~~~~~~~~~~g~~~w~~~~~~~~~~~---~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~---Dl~~~G~D~ 981 (2492)
.+++++.+++.|++.||+..+.++++. ++..|+|++||||||||||++|.+++..++ +.++|+ |+|+||+||
T Consensus 488 ~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~~~~--~~~~~~~~aD~~lEGsDQ 565 (933)
T COG0060 488 EELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPRE--NLKFPALFADFYLEGSDQ 565 (933)
T ss_pred HHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccCCcc--cccCccccCcEEEEeccc
Confidence 999999999999999999999999873 466999999999999999999999998444 355666 999999999
Q ss_pred chhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcccccccCHHHH
Q psy15223 982 HRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEIL 1061 (2492)
Q Consensus 982 ~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~~d~~fs~~~l 1061 (2492)
+||||+|++++++++++.+||++|++|||++|++|+|||||+||+|+|.+++++||||+||||++++++..|++||++++
T Consensus 566 ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s~~il 645 (933)
T COG0060 566 TRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEIL 645 (933)
T ss_pred cchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecCchhccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhh
Q psy15223 1062 NRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGS 1141 (2492)
Q Consensus 1062 ~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~ 1141 (2492)
+++.+.|++|||++||+++|+++|+|..+.+...++..+|||||+++++++++++++|++|+|+++++.|++||+.+||+
T Consensus 646 ~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~ 725 (933)
T COG0060 646 KQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSN 725 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhH
Confidence 99999999999999999999999999877677778999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCC-
Q psy15223 1142 FYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYN- 1220 (2492)
Q Consensus 1142 ~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~- 1220 (2492)
|||+++|||+|++..++.+|++||++|+++|..++++||||+||+|||+|++|+.. ..++|||+++||+......
T Consensus 726 ~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~----~~~eSVhl~~~p~~~~~~~~ 801 (933)
T COG0060 726 WYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGE----RKEESVHLEDWPEVDEELID 801 (933)
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccC----CCCceeEeccCCcccccccc
Confidence 99999999999998999999999999999999999999999999999999999875 2268999999999766554
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCchhHHHHHHhHHHHHHhhhccceEEeecCCC----
Q psy15223 1221 -SKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNL---- 1295 (2492)
Q Consensus 1221 -~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~~~~~~l~~~~~~L~~l~~vs~v~i~~~~~~---- 1295 (2492)
+..+..+|+..+++|..|+++++.+|.++.|++++++++++..+. ...+..+..+|..+|++|.+++....+.
T Consensus 802 ~~~~~~~r~~~~~k~R~~v~~~l~~~r~~~~I~~~lnak~~~~~~~--~~~~~~~~~~l~~~~~~s~~~v~~~~~~~~~~ 879 (933)
T COG0060 802 VEAALAARWEALLKLRDPVNKALEAARLEKVIGSSLNAKVVIYTED--SELLYKLKPNLGKVLITSAVEVAKALEALAGA 879 (933)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcceeEEEEeecc--hhhhhhhchhHHHHHhhhHHHHHhhhccccch
Confidence 556788999999999999999999999999999999999998765 4455566667999999997766543111
Q ss_pred -----Cc---eEEEEEecCCCCCccccccccccCCCCCCCCcchhhhhhccC
Q psy15223 1296 -----SE---ECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLFE 1339 (2492)
Q Consensus 1296 -----~~---~~v~v~~~~~~kC~RCw~~~~~v~~~~~~~~LC~RC~~~v~~ 1339 (2492)
.. +.+.++++.+.||+|||+|..+++.+..++.||.||+.++++
T Consensus 880 ~~~~~~~~~~~~~~~~~~eg~~c~r~~~~~~~~~~~~~~e~l~~~~v~~iq~ 931 (933)
T COG0060 880 EAEELVDGDGVELTVEKAEGEKCPRCWHYDTELGEELEEEGLCRRCVRRIQE 931 (933)
T ss_pred hhhhhhcccceeEEEEeccCCcCCeEEEEcCcCCcccccchHHHHHHHHHhh
Confidence 11 788899999999999999999999999999999999998764
No 2
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-196 Score=1904.14 Aligned_cols=890 Identities=45% Similarity=0.819 Sum_probs=835.0
Q ss_pred hhhccccCCCCchhHHHhhhcccchhcc-cccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccc
Q psy15223 1566 AILNGELSKREPGWIKKWQEKKIYHQIR-KASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVP 1644 (2492)
Q Consensus 1566 ~~~~a~l~~~E~~~~~~W~~~~~~~~~~-~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~ 1644 (2492)
-+|+++++++|++++++|+++++|++.+ +.++++++|++|||||||||.+|+|||+|+|+||||.||++|+||+|.|+|
T Consensus 14 fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~p 93 (933)
T COG0060 14 FPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVP 93 (933)
T ss_pred CCccCChhhcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCC
Confidence 3789999999999999999999999988 477899999999999999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHH
Q psy15223 1645 GYDCHGMPIEIQIEKLYGK------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFG 1718 (2492)
Q Consensus 1645 G~D~hGlPie~~a~k~~~~------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~ 1718 (2492)
||||||||||.+++|++|. +++.++|+++|+++|.++++.|+++|+|||+++||+++|.|||++|++.++|+|+
T Consensus 94 GWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~ 173 (933)
T COG0060 94 GWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFK 173 (933)
T ss_pred CCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHH
Confidence 9999999999999999983 5889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhcc
Q psy15223 1719 IIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPA 1798 (2492)
Q Consensus 1719 ~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~ 1798 (2492)
+|++|||||||.|||+|||+|+|+|||+||||.++.|||+||+|++.+.. .+.+.+++||||||||||+
T Consensus 174 ~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~~~~-----------~~~~~~lviWTTTPWTLPa 242 (933)
T COG0060 174 ELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEG-----------LDENAYLVIWTTTPWTLPA 242 (933)
T ss_pred HHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceEEEEEEeccCC-----------CCCCcEEEEEeCCCCCchh
Confidence 99999999999999999999999999999999999999999999997641 1357899999999999999
Q ss_pred ccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceE-EEEecccccccEEeCCCCccccCCCceecEEec
Q psy15223 1799 NQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNIDINYNRLSPIYLG 1877 (2492)
Q Consensus 1799 ~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~ 1877 (2492)
|.||||||+.+|++++..+ +.+|+|++++++++++++.+.+++ .+++|++|+|++|.|||... .+++..||+.+
T Consensus 243 N~aiav~pd~~Y~lv~~~~---~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~--~~~~~~~v~~g 317 (933)
T COG0060 243 NLAIAVHPDLDYVLVEVNG---EKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDF--VYDRAFPVILG 317 (933)
T ss_pred cceeEeCCCcceEEEEECC---EEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccc--cccceeeEEec
Confidence 9999999999999999875 889999999999999999876555 99999999999999999843 33689999999
Q ss_pred CccccCCCCceEEcCCCCChhhHHHHHHcC-CCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceee
Q psy15223 1878 DYITVDSGTGIVHSAPAYGIEDFLIFKKQN-MKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIE 1956 (2492)
Q Consensus 1878 ~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~-l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~ 1956 (2492)
|||+.+.|||+||+|||||.+||.+|+++| + ++.||||++|+|+++++.|.|+.|++|++.|++.|+++|.|++.+
T Consensus 318 d~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l---~v~~pVD~~G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e 394 (933)
T COG0060 318 DHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLL---EVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSE 394 (933)
T ss_pred CeEecCCCccceecCCCCCHHHHHHHHHcCCc---CCccccCCCccccccchhhCCceeccCCHHHHHHHHhCCceeeee
Confidence 999999999999999999999999999999 8 999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCC
Q psy15223 1957 MFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWG 2036 (2492)
Q Consensus 1957 ~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG 2036 (2492)
+++||||||||||+|+|||+|+|||+++++ +|+++++.+++|+|+|+++++||.+||++++||||||||+||
T Consensus 395 ~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~--------~r~~~l~~i~~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WG 466 (933)
T COG0060 395 KIEHSYPHCWRTKTPLIYRATPQWFVSVDK--------LRDKMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWG 466 (933)
T ss_pred eEEeCCCcccCCCCeeEEeecchheeEHHH--------HHHHHHHHHhcceEEChhHHHHHHHHHcCCCcceeeccccCC
Confidence 999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred ceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCC---CccCceecccccccccccCcchhhhccCC
Q psy15223 2037 VPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD---DAVNYKKSNDTLDVWFDSGITHQTVIRGS 2113 (2492)
Q Consensus 2037 ~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~---~~~~~~~~~dvlDvWfdSg~~~~~~~~~~ 2113 (2492)
+|||+|+|++||++.+...++.+++.+.+++.|++.|+...++++++. ++..|+|++||||||||||++|++++..+
T Consensus 467 vPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~~~ 546 (933)
T COG0060 467 VPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPR 546 (933)
T ss_pred CceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccCCc
Confidence 999999999999887557899999999999999999999999999873 46699999999999999999999999855
Q ss_pred ccccCCcCc---eeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhH
Q psy15223 2114 HKKQLIFPA---DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEI 2190 (2492)
Q Consensus 2114 ~~~~~~~P~---Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~ 2190 (2492)
+ +.++|. |+|+||+||+||||+|+++.++++++++||++|++|||++|++|+|||||+||+|+|.+++++||||+
T Consensus 547 ~--~~~~~~~~aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADi 624 (933)
T COG0060 547 E--NLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADI 624 (933)
T ss_pred c--cccCccccCcEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHhhCchh
Confidence 5 456666 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh
Q psy15223 2191 LRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR 2270 (2492)
Q Consensus 2191 lR~~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e 2270 (2492)
||||++++++..|+.||++.++++.+.|++|||++||+++++++|+|..+.....++..+|||||+++++++++++++|+
T Consensus 625 LRLwv~ssd~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye 704 (933)
T COG0060 625 LRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYE 704 (933)
T ss_pred eeeeeeecCchhccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999876666678899999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCcc
Q psy15223 2271 MYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFY 2350 (2492)
Q Consensus 2271 ~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~ 2350 (2492)
+|+|+++++.|++|++.+||+|||+++|+|+|++..++.+|+++|++|+++|.+++++||||+||+|||+|+.|++.
T Consensus 705 ~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~--- 781 (933)
T COG0060 705 NYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGE--- 781 (933)
T ss_pred hcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccC---
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999875
Q ss_pred ccCCCCeeeccCCCCCccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeChhhHHHHHHhHHHH
Q psy15223 2351 IESGETIFTQLHYKLPKVYN--SKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEEL 2428 (2492)
Q Consensus 2351 ~~~~~sV~~~~wP~~~~~~~--~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~~~~~~l~~~~~~L 2428 (2492)
...+|||+..||+...... +..+...|+.++.+|+.|+++++.+|.++.|+.++++++++..++ ...+..+..+|
T Consensus 782 -~~~eSVhl~~~p~~~~~~~~~~~~~~~r~~~~~k~R~~v~~~l~~~r~~~~I~~~lnak~~~~~~~--~~~~~~~~~~l 858 (933)
T COG0060 782 -RKEESVHLEDWPEVDEELIDVEAALAARWEALLKLRDPVNKALEAARLEKVIGSSLNAKVVIYTED--SELLYKLKPNL 858 (933)
T ss_pred -CCCceeEeccCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcceeEEEEeecc--hhhhhhhchhH
Confidence 2368999999999877665 456788899999999999999999999999999999999998865 44455666778
Q ss_pred HHhhhcccEEEeecCCC---------Cc---eEEEEEeCCCCCCcccceEecCCCCCCCCCCCChhhHHhhhcc
Q psy15223 2429 KFFLLTSSVSLFQIKNL---------SE---ECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLFAE 2490 (2492)
Q Consensus 2429 ~~l~~vs~v~i~~~~~~---------~~---~~v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~~~~~ 2490 (2492)
..++++|.+++....+. .. +.+.++++.+.||+|||++..+++.+..++.+|.||..++++.
T Consensus 859 ~~~~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~eg~~c~r~~~~~~~~~~~~~~e~l~~~~v~~iq~~ 932 (933)
T COG0060 859 GKVLITSAVEVAKALEALAGAEAEELVDGDGVELTVEKAEGEKCPRCWHYDTELGEELEEEGLCRRCVRRIQEM 932 (933)
T ss_pred HHHHhhhHHHHHhhhccccchhhhhhhcccceeEEEEeccCCcCCeEEEEcCcCCcccccchHHHHHHHHHhhc
Confidence 88898887765553111 12 7888999999999999999999998889999999999998753
No 3
>KOG0433|consensus
Probab=100.00 E-value=5.8e-184 Score=1658.95 Aligned_cols=852 Identities=35% Similarity=0.599 Sum_probs=772.6
Q ss_pred ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHH-HHHHHHhCc---CCCHHHH
Q psy15223 445 ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIE-IQIEKLYGK---NLSPIEI 520 (2492)
Q Consensus 445 ~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE-~~a~k~~~~---~~~~~e~ 520 (2492)
.+++++.|++|| |||+||||||+|+|+||||.||+.++|++|+|+||||||||||| .+|.+.+.. +++|.|+
T Consensus 54 s~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~lei 129 (937)
T KOG0433|consen 54 SDQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEI 129 (937)
T ss_pred hhccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHH
Confidence 667788999999 99999999999999999999999999999999999999999999 688887654 6799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccc
Q psy15223 521 QNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEY 600 (2492)
Q Consensus 521 ~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey 600 (2492)
|++++.+|.+.|++|++.|+||||++||+++|.||||+|+..++++|.+||+||||||+.|||||||+++|||||+|+||
T Consensus 130 R~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEY 209 (937)
T KOG0433|consen 130 RAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEY 209 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-ceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCC-CCceeeeeHH
Q psy15223 601 K-KKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKND-PPLLLILAFN 678 (2492)
Q Consensus 601 ~-~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~-~~~~~i~a~~ 678 (2492)
+ +|.|+|+|++||+...... .... ......+|++||||||||||+|.||||||+..|++|+.++. ..++|+||.+
T Consensus 210 n~nH~S~S~Y~~F~L~~~S~~--~~~~-~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~ 286 (937)
T KOG0433|consen 210 NDNHQSTSAYFRFKLINFSSS--AHSE-DSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASK 286 (937)
T ss_pred CcCCcceeEEEEEeccCCccc--cccC-CCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccc
Confidence 8 5999999999999865421 1111 11234599999999999999999999999999999998732 2478999999
Q ss_pred hHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCC
Q psy15223 679 LVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNM 758 (2492)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l 758 (2492)
+++++....+.+...+++++|.+|+|.+|.||+.+ ++..|++.++|||.+.|||+||+|||||+|||.++.++||
T Consensus 287 L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~-----~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l 361 (937)
T KOG0433|consen 287 LLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLHN-----ELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGL 361 (937)
T ss_pred hhhhhhhhcCcceeeeeecchhhccCceecCcCcc-----ccCCccccccceecCcccceeecCCCCChHHHHHHhhcCC
Confidence 99999888877777779999999999999999974 7789999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCcccccCC-CCCCcchh-hchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCC
Q psy15223 759 KDSDIINPVMDDGNFISTLP-LFGGMSIW-KASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 836 (2492)
Q Consensus 759 ~~~~~~~~vd~~G~~~~~~~-~~~G~~v~-~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~ 836 (2492)
++.+|||++|+||.+++ .+.|+.|. |+++.|+..|. ..+++.++|.||||++||||+|||+|+|+||||++++
T Consensus 362 ---~~~s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~ 436 (937)
T KOG0433|consen 362 ---RVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEE 436 (937)
T ss_pred ---CcccccCCCCceecccccccccchhhccccHhHHHHHh--hhhhhhhcccccCCcccccCCceEEecchhheeeHHh
Confidence 77799999999999996 89999998 78999999999 6899999999999999999999999999999999998
Q ss_pred CCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHh
Q psy15223 837 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIE 916 (2492)
Q Consensus 837 ~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~ 916 (2492)
+|..++++|++|+|+|..+.+||..|+..|++|||||||.||+|||+||++++|++. ++.+++.|+...++
T Consensus 437 --------~k~~A~~al~~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l-~ns~~~~h~~~~~e 507 (937)
T KOG0433|consen 437 --------IKKRASMALDDVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYL-SNSLIEWHAKLTRE 507 (937)
T ss_pred --------hhhHHHHHHhhceeCCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecCCCcee-ehHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887 89999999999999
Q ss_pred hcCCccccccCchhhcCC--------CccCceecCCccccccccccccchhcccCccccCCcCeeeeecccccchhhHHH
Q psy15223 917 LNGIEIWQNLDIKEFLGD--------DAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS 988 (2492)
Q Consensus 917 ~~g~~~w~~~~~~~~~~~--------~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~s 988 (2492)
++|+|.||..++++++|. ...+|.|++||||||||||++|.++++.. ...++|+|+||+||+||||||
T Consensus 508 qeGsD~Ww~~~~eellpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~~~~----~~~~aDv~LEG~DQ~rGWFQS 583 (937)
T KOG0433|consen 508 QEGSDVWWEIDVEELLPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVLDNE----REHVADVYLEGVDQFRGWFQS 583 (937)
T ss_pred HhCCcceEeCChhHhCcHhhhcccchhHHHhccCCceeeeEecCCCcceeecCCC----CCcceeeEEecchhcchHHHH
Confidence 999999999999999873 25679999999999999999999998742 457899999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhh------cChhhHHHHhhccCcccccccCHHHHH
Q psy15223 989 SLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL------FGAEILRLWVASTDYSKDLSISNEILN 1062 (2492)
Q Consensus 989 ~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~------yGaD~lRl~l~s~~~~~d~~fs~~~l~ 1062 (2492)
+|++++|..+++||++|++|||++|++|.|||||+||||+|+.+++. ||+|+||||++++++..|+.+++.+|+
T Consensus 584 sLLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA~~~~t~d~~iGp~il~ 663 (937)
T KOG0433|consen 584 SLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGSENTGESKIGPKILD 663 (937)
T ss_pred HHHHHHHHhccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeeeecccccCceecCHHHHH
Confidence 99999999999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhh
Q psy15223 1063 RVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSF 1142 (2492)
Q Consensus 1063 ~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~ 1142 (2492)
++.+.+.|+||++||+++|+.+|++..+.++..++..+|+++|.+|+++++++++.|++|+|+++++.|..|++++||++
T Consensus 664 qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~ 743 (937)
T KOG0433|consen 664 QVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAF 743 (937)
T ss_pred HHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCch
Q psy15223 1143 YLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSK 1222 (2492)
Q Consensus 1143 Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~ 1222 (2492)
||+++||||||+..++..||++|++|++++..+++.++||+||++||+||+|+.. .++ +|...||.+...+...
T Consensus 744 YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~-----~~~-~f~~k~~~l~s~~~~~ 817 (937)
T KOG0433|consen 744 YFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGS-----HEK-IFRLKWEDLHSGLLTP 817 (937)
T ss_pred HHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCC-----CCc-ccccCccccchhhcCc
Confidence 9999999999999999999999999999999999999999999999999999953 223 8999999987766544
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeC----chhHHHHHHhHHHHHHhhhccceEEeecCCCC
Q psy15223 1223 KL--LYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKIN----KLDFEILNEFGEELKFFLLTSSVSLFQIKNLS 1296 (2492)
Q Consensus 1223 ~~--~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~----~~~~~~l~~~~~~L~~l~~vs~v~i~~~~~~~ 1296 (2492)
.. ...|..+++++....+.++.++..+.+++++++.+.++.. .++.++++.++.++.++.+.+.|++.+....-
T Consensus 818 ~~~~~~~~~~vl~~~~~~~~~l~la~~~~~~~s~L~~~~~~ht~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~vE~~~~~ 897 (937)
T KOG0433|consen 818 HDQLSKHMKFVLEVRNELESTLGLAIDTSKKGSVLQVTPEYHTIRIYESELPELLNVSQVILHENRDENSVELVESRLRY 897 (937)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHhhhhhhhccceEEEEEeecccccchhHHHHHHHHhhhhhhhhhcccchHHHHhhhHH
Confidence 33 2358889999999999999999999999999998888764 23344444444455555544444443322111
Q ss_pred ceEEEEEecCCCCCccccccccccCCCCCCCCcchhhhhhcc
Q psy15223 1297 EECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLF 1338 (2492)
Q Consensus 1297 ~~~v~v~~~~~~kC~RCw~~~~~v~~~~~~~~LC~RC~~~v~ 1338 (2492)
+.......+.+.||+|||+++.. .+.||.||..++.
T Consensus 898 ~~~~~~~ra~~~~c~rcw~~~~~------~~~lc~rc~~~~~ 933 (937)
T KOG0433|consen 898 CERCRKHRATFSRCVRCWDLRKQ------DPPLCLRCQDLRF 933 (937)
T ss_pred HHHHHHHHhcccccHHHHhhhcc------CCcccchHHHHHh
Confidence 23344568999999999999873 3459999998864
No 4
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=1.5e-180 Score=1849.51 Aligned_cols=885 Identities=40% Similarity=0.717 Sum_probs=797.5
Q ss_pred cccccccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc----
Q psy15223 438 GVWGEIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK---- 513 (2492)
Q Consensus 438 ~ly~~~~~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~---- 513 (2492)
.+|++..+...+++|+||+|||||||.||||||+|++++||++||+||+||+|+|+|||||||||||++++|.++.
T Consensus 20 ~~y~~~~~~~~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~ 99 (974)
T PLN02843 20 QVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARK 99 (974)
T ss_pred CCccccccccCCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhc
Confidence 4565544323356799999999999999999999999999999999999999999999999999999999998763
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccc
Q psy15223 514 NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSAL 593 (2492)
Q Consensus 514 ~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taL 593 (2492)
++++++|+++|++|+.++++.|+++|+|||+++||+++|+||||.|++.++++|.+|+++|||||+.|||+|||+|+|||
T Consensus 100 ~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~Tal 179 (974)
T PLN02843 100 ELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTAL 179 (974)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc-eeccEEEEEeecCCchh-hhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCC---
Q psy15223 594 AEAEIEYKK-KYDFSIYVGFSFSEPEK-IKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKND--- 668 (2492)
Q Consensus 594 ae~Evey~~-~~~~s~yv~f~~~~~~~-~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~--- 668 (2492)
||+||+|++ +.++++||+|++.+... +.. .... ...+.+++||||||||||||+||||||+++|++|+.+++
T Consensus 180 ae~Evey~e~~~~~s~yv~f~~~~~~~~~~~--~~~~-~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d 256 (974)
T PLN02843 180 AEAELEYPEGHVSKSIYVAFPVVSPSETSPE--ELEE-FLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSED 256 (974)
T ss_pred hHhHhcccCCccCceEEEEEEecCCcccccc--cccc-ccccceEEEEeCcchhhccCcEEEECCCCceEEEEecccccc
Confidence 999999996 78999999999976321 100 0000 001369999999999999999999999999999997521
Q ss_pred -------------------CCceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEe-cC
Q psy15223 669 -------------------PPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL-GD 728 (2492)
Q Consensus 669 -------------------~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~-~~ 728 (2492)
.++.||||+++++++.++++.+..++++++|++|+|++|.|||+ ++++||+. ++
T Consensus 257 ~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~------~~~~pii~~~~ 330 (974)
T PLN02843 257 ESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLY------NRESPVVIGGD 330 (974)
T ss_pred ccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCC------CCceeEEecCC
Confidence 13689999999999999988765556999999999999999998 78899974 89
Q ss_pred CcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCCCCcccccCCCCCCcchh-hchHHHHHHHHhcCCeeeeee
Q psy15223 729 YITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIW-KASKLICSYLKKSKTLFNIEM 807 (2492)
Q Consensus 729 ~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~-~a~~~i~~~L~~~g~l~~~~~ 807 (2492)
||++++|||+||+|||||++||++|++||| ++++|||++|+|++++|+|+|+.|+ +||+.|++.|+++|.|++.+.
T Consensus 331 ~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l---~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~ 407 (974)
T PLN02843 331 YITTESGTGLVHTAPGHGQEDYITGLKYGL---PLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEA 407 (974)
T ss_pred ccCCCCCCCeEEeCCCCCHHHHHHHHHcCC---CcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCCCeeeeee
Confidence 999999999999999999999999999999 8889999999999999999999998 899999999999999999999
Q ss_pred eccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCc
Q psy15223 808 FEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGV 887 (2492)
Q Consensus 808 ~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGv 887 (2492)
++|+||||||||+|||+|+|+||||++++ +|+++++++++|+|+|+++++|+.+||++|+||||||||+|||
T Consensus 408 ~~H~yp~cwR~~~pvi~r~t~QWFi~~~~--------~k~~al~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG~ 479 (974)
T PLN02843 408 YGHKYPYDWRTKKPTIFRATEQWFASVEG--------FRQAALDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGV 479 (974)
T ss_pred ecCCCCccCCCCCeEEEEecCceeEeCHH--------HHHHHHHHHhccEEEChHHHHHHHHHHhcCcceeeeecccccc
Confidence 99999999999999999999999999987 9999999999999999999999999999999999999999999
Q ss_pred eeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccccCchhhcCC----CccCceecCCccccccccccccchhcccC
Q psy15223 888 PIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD----DAVNYKKSNDTLDVWFDSGITHQTVIRGS 963 (2492)
Q Consensus 888 pIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~~~~~----~~~~~~~~~dvlDvWfdSg~~~~~~~~~~ 963 (2492)
|||+|||++||+++ .+.+++++++++++..|++.||..++++++++ +...|.|++||||||||||++|..+++.+
T Consensus 480 pIP~~~~~~~~~~~-~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~~~ 558 (974)
T PLN02843 480 PIPVFYHVETKEPL-MNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLGSR 558 (974)
T ss_pred EEEEEEEcCCCCEe-echhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhccc
Confidence 99999999999887 67899999999999999999999988888874 24569999999999999999998887654
Q ss_pred ccccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhh---------
Q psy15223 964 HKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN--------- 1034 (2492)
Q Consensus 964 ~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~--------- 1034 (2492)
. +.+||+|+|++|+||+|||||++++++.++.+.+||++|++|||++|.+|+|||||+||+|+|.++|+
T Consensus 559 ~--~~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~ 636 (974)
T PLN02843 559 E--GLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEP 636 (974)
T ss_pred c--ccCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhcccccccc
Confidence 3 46799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChhhHHHHhhccCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHH
Q psy15223 1035 LFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKE 1114 (2492)
Q Consensus 1035 ~yGaD~lRl~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~ 1114 (2492)
+||+|+||||++++++++|++|+.+.++++.+.+++|||++||+++|+.+|++ ...++..++..+|+|+++++++++++
T Consensus 637 ~yGaD~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~-~~~~~~~~~~~~D~wiLskL~~li~~ 715 (974)
T PLN02843 637 AYGADVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKP-DNAVPYEDLPSIDKYALFQLENVVNE 715 (974)
T ss_pred ccChHHHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCc-ccccCccccCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999876 22334445678899999999999999
Q ss_pred HHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHc
Q psy15223 1115 ILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 1194 (2492)
Q Consensus 1115 v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l 1194 (2492)
+.++|++|+|++|++.+++|++.++||+||+.+|||+|++..++..|++++++|+.+++.++++|+|||||+|||||++|
T Consensus 716 v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L 795 (974)
T PLN02843 716 IEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNL 795 (974)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999987777888999999999999999999999999999999999
Q ss_pred cCCCccccCCCceeeccCCCCcccCCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCc-hhHHHH
Q psy15223 1195 SDKNFYIESGETIFTQLHYKLPKVYNS--KKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINK-LDFEIL 1271 (2492)
Q Consensus 1195 ~~~~~~~~~~~SV~~~~wp~~~~~~~~--~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~-~~~~~l 1271 (2492)
+... .....+|||++.||+.++.+.+ ..+.+.|+.++++|.+|++++|.+|+++.|++++++.|+|..+. +..+.+
T Consensus 796 ~~~~-~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~l~~~r~~~~i~~~~~~~v~l~~~~~~~~~~l 874 (974)
T PLN02843 796 PFQE-DGSAAESVFEAGWPTPNEEWLSFPAEDVDFWSLLLEVRDEVNKVLESARNGKLIGASLEAKVYLHASDASLAARL 874 (974)
T ss_pred cccc-cCCCCCceEecCCCCCchhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccceeEEEEeCCHHHHHHH
Confidence 7420 0012469999999997765443 44566799999999999999999999999999999999997643 355667
Q ss_pred HHh------HHHHHHhhhccceEEeecCC----------------CCceEEEEEecCCCCCccccccccccCCCCCCCCc
Q psy15223 1272 NEF------GEELKFFLLTSSVSLFQIKN----------------LSEECIIIKPSIYKKCNRCWHYQADVGERDDYPDL 1329 (2492)
Q Consensus 1272 ~~~------~~~L~~l~~vs~v~i~~~~~----------------~~~~~v~v~~~~~~kC~RCw~~~~~v~~~~~~~~L 1329 (2492)
+.+ .++|+++|+||+|++...+. ..+++|.|.++.++||||||+|.+++|.++++++|
T Consensus 875 ~~~~~~~~~~~~l~~l~~vs~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~kC~RCW~~~~~~~~~~~~~~l 954 (974)
T PLN02843 875 AELCGASNGADELRRIFITSQVEVVSSEDDETAACGSYTGEYVEGAGRVWVGVSRADGSKCERCWNYSPAVGSFSDHPTL 954 (974)
T ss_pred HhhccccchHHHHHHHhccCceEeecCCCccccccchhccccccccCceEEEEEeCCCCCCCCCCCEeCCcCCCCCCCCc
Confidence 663 37899999999999963211 02478899999999999999999999998889999
Q ss_pred chhhhhhccCCccchhHH
Q psy15223 1330 CNRCFNNLFEPCAMCAGA 1347 (2492)
Q Consensus 1330 C~RC~~~v~~~c~mC~~a 1347 (2492)
|.||..++..+-|--++|
T Consensus 955 C~rc~~~~~~~~~~~~~~ 972 (974)
T PLN02843 955 CERCYPVVIAQPPPLAAA 972 (974)
T ss_pred ChhhHHHHcCCCCccccc
Confidence 999999998666555444
No 5
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.8e-180 Score=1844.97 Aligned_cols=871 Identities=42% Similarity=0.700 Sum_probs=793.0
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHh---Cc
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLY---GK 513 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~---~~ 513 (2492)
.+|++.. .+.++++|+||||||||||.||||||+|+|+|||++||+||+||+|+|+|||||||||||.+|+|.+ |+
T Consensus 41 ~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~ 120 (961)
T PRK13804 41 DLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGK 120 (961)
T ss_pred CCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCC
Confidence 4566554 4567899999999999999999999999999999999999999999999999999999999999987 33
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCC
Q psy15223 514 ---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCK 590 (2492)
Q Consensus 514 ---~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~ 590 (2492)
++++++|+++|++||.++++.|++||+|||+++||+|+|.||||.|+++++|+|.+|+++|||||+.+||+|||.|+
T Consensus 121 ~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~ 200 (961)
T PRK13804 121 NKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVER 200 (961)
T ss_pred ChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCC--
Q psy15223 591 SALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKND-- 668 (2492)
Q Consensus 591 taLae~Evey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~-- 668 (2492)
|||||+||||+++.|+++||+|++.+...+ ...+.+++||||||||||||+||||||+++|++++.++.
T Consensus 201 TaLa~~Evey~~~~s~~~~v~F~~~~~~~~---------~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~ 271 (961)
T PRK13804 201 TALAEAEIEYHDIESDTIWVKFPVKDGKGI---------LDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAEN 271 (961)
T ss_pred CCccchhcccccccCceEEEEEEecCcccc---------cCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccc
Confidence 999999999999999999999999653211 013469999999999999999999999999999997531
Q ss_pred -----CCceeeeeHHhHHHHHHHcCCcCcE-EEEEecccccCCEEecCCcccccCCCc-----eecEEecCCcccCCCCc
Q psy15223 669 -----PPLLLILAFNLVKSCLKKFGFKGNI-IGICKGIKLSKINFFHPLSNIDINYNR-----LSPIYLGDYITVDSGTG 737 (2492)
Q Consensus 669 -----~~~~~i~a~~~~~~~~~~~~~~~~~-~~~~~G~~l~g~~~~~P~~~~~~~~~~-----~~pii~~~~V~~~~GTG 737 (2492)
.++.||||+++++++.++.+.+.+. +.+++|++|.|++|.|||+ ++ .+|||+++||++++|||
T Consensus 272 ~~~~~~~e~~iva~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~------~~~~~~~~~pvi~~~~V~~~~GTG 345 (961)
T PRK13804 272 DFWAKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLD------GLDGYEFEVPVLDGDHVTDDAGTG 345 (961)
T ss_pred cccccCCcEEEeHHHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCC------CcccccceeEEEecCccCCCCCCc
Confidence 1268999999999999998876654 4999999999999999998 66 89999999999999999
Q ss_pred cEEecCCCCHHHHHHHHHcCC-CCCCcccccCCCCcccccCCC--------CCCcchhhchHHHHHHHHhcCCeeeeeee
Q psy15223 738 IVHSAPAYGIEDFLIFKKQNM-KDSDIINPVMDDGNFISTLPL--------FGGMSIWKASKLICSYLKKSKTLFNIEMF 808 (2492)
Q Consensus 738 ~Vh~aPahg~~D~~~~~~~~l-~~~~~~~~vd~~G~~~~~~~~--------~~G~~v~~a~~~i~~~L~~~g~l~~~~~~ 808 (2492)
+||+|||||++||++|++||| +. ++|||++|+|++++|. |.|+.+++||+.|++.|++.|.|++.++|
T Consensus 346 ~Vh~aPahg~~Dy~~~~~~~l~~~---~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~ 422 (961)
T PRK13804 346 FVHTAPGHGREDFNVWMKYGRTEI---PVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRL 422 (961)
T ss_pred eEEeCCCCCHHHHHHHHHcCCCcc---cccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhCCCcccccce
Confidence 999999999999999999999 54 4899999999999887 89999999999999999999999999999
Q ss_pred ccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCce
Q psy15223 809 EHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVP 888 (2492)
Q Consensus 809 ~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvp 888 (2492)
.|+||||||||+|||+|+++||||++++.. .++.++|+++++++++|+|+|+++++|+.+||++|+||||||||+||||
T Consensus 423 ~h~yp~~wR~~~pii~r~t~QWFi~~~~~~-~~~~~~k~~al~~i~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~P 501 (961)
T PRK13804 423 KHSYPHSWRSKKPVIFRNTPQWFISMDKDL-GDGTTLRSRALDAIDKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVP 501 (961)
T ss_pred ecCCCccCCCCCeEEEeccccccEEcCCcc-cchHHHHHHHHHHHhccEEECHHHHHHHHHHHhcCccceeeeeccCCce
Confidence 999999999999999999999999998611 1234599999999999999999999999999999999999999999999
Q ss_pred eeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccccCchhhcCC---CccCceecCCccccccccccccchhcccCcc
Q psy15223 889 IAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD---DAVNYKKSNDTLDVWFDSGITHQTVIRGSHK 965 (2492)
Q Consensus 889 IP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~~~~~---~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~ 965 (2492)
||+|||+ +|+++ .+.+++.++.+.++..|+++||+.+..+++++ ++..++|++||||||||||++|..+++.+.
T Consensus 502 IP~~~~~-~~~~~-~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~~~~~- 578 (961)
T PRK13804 502 IPIFVAE-DGEIL-MDEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVLEDRP- 578 (961)
T ss_pred eeEEEcC-CCCEe-ccHHHHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCccccccCCc-
Confidence 9999996 56765 67789999999999999999998887777764 356799999999999999999988776544
Q ss_pred ccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHh
Q psy15223 966 KQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWV 1045 (2492)
Q Consensus 966 ~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l 1045 (2492)
+..||+|+|++|+||+|||||++++++.++.+.+||++|++|||++|.+|+|||||+||+|+|.+++++||||+||||+
T Consensus 579 -~~~~PaD~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~l 657 (961)
T PRK13804 579 -DLKWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWV 657 (961)
T ss_pred -ccCCCceEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchH
Q psy15223 1046 ASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFH 1125 (2492)
Q Consensus 1046 ~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~ 1125 (2492)
+++++++|++||++.++++.+.+++|+|++||+++++.+|++....++...+..+|+|++++++++++++.++|++|+|+
T Consensus 658 ls~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~ 737 (961)
T PRK13804 658 ASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFK 737 (961)
T ss_pred HhCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 99899999999999999999999999999999999999887654333345567889999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCC
Q psy15223 1126 MIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGE 1205 (2492)
Q Consensus 1126 ~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~ 1205 (2492)
+|++.+++|++++||++||+++|+|+|++..++..|++++++|+.+++.++++|+|||||+|||||++|++. ..+
T Consensus 738 ~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~~-----~~~ 812 (961)
T PRK13804 738 RIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYPE-----EEV 812 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcccC-----CCC
Confidence 999999999999999999999999999988888889999999999999999999999999999999999842 236
Q ss_pred ceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCc-hhHHHHHHhHHHHHHhhhc
Q psy15223 1206 TIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINK-LDFEILNEFGEELKFFLLT 1284 (2492)
Q Consensus 1206 SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~-~~~~~l~~~~~~L~~l~~v 1284 (2492)
|||++.||+.++.+.++++++.|+.+.++|+.|++++|.+|+++.|++++++.|+|.++. +..+.|..+ +|+++|+|
T Consensus 813 sv~l~~wP~~~~~~~d~~~~~~~~~~~~~r~~v~~~le~~R~~~~i~~~~e~~v~l~~~~~~~~~~l~~~--~l~~~~~v 890 (961)
T PRK13804 813 SVHLEQFPETPAFWRDDALAEKWRKFRAVRDVVTGALEEERAAKRIGSSLEAAPTVYIADPELLAALEGL--DFAEICIT 890 (961)
T ss_pred ceEecCCCCCcchhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEEcCCHHHHHHHHHH--HHHHHhhh
Confidence 999999999776666777888899999999999999999999999999999999997644 455666665 59999999
Q ss_pred cceEEeecC--C-------CCceEEEEEecCCCCCccccccccccCCCCCCCCcchhhhhhcc
Q psy15223 1285 SSVSLFQIK--N-------LSEECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLF 1338 (2492)
Q Consensus 1285 s~v~i~~~~--~-------~~~~~v~v~~~~~~kC~RCw~~~~~v~~~~~~~~LC~RC~~~v~ 1338 (2492)
|+|++...+ + ..+++|.|.++.++||||||+|.+++|.+.++++||.||..++.
T Consensus 891 s~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~~~ 953 (961)
T PRK13804 891 SQLTVAAGEAPADAFRLDEVEGVAVVVEKAEGEKCARSWRITPDVGSDPYYPDVSPRDAKALR 953 (961)
T ss_pred CceEEecCCCcchhhcccccCceEEEEEeCCCCCCcCCCCCcCCcCCCCCCCCcChhHHHHHH
Confidence 999996321 0 02478999999999999999999999988889999999999986
No 6
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-179 Score=1841.60 Aligned_cols=863 Identities=52% Similarity=0.932 Sum_probs=799.9
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc---
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK--- 513 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~--- 513 (2492)
.+|++.. .+.++++|+||+|||||||.||||||+|+|++||++||+||+||+|+|+|||||||||||.+|+|++|.
T Consensus 36 ~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~ 115 (912)
T PRK05743 36 DLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGK 115 (912)
T ss_pred CCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccc
Confidence 4565544 456788999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccc
Q psy15223 514 NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSAL 593 (2492)
Q Consensus 514 ~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taL 593 (2492)
++++++|+++|++|+.++++.|++||+|||+++||+++|.||||.|+++++++|.+|+++|||||+.+||+|||.|+|||
T Consensus 116 ~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaL 195 (912)
T PRK05743 116 KLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSAL 195 (912)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCcee
Q psy15223 594 AEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLL 673 (2492)
Q Consensus 594 ae~Evey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~ 673 (2492)
||+||+|+++.|+++||+|++.+.. +... ..+.+++||||||||||||+||||||+++|++++.++ +.|
T Consensus 196 ad~Evey~~~~s~~~yv~f~l~~~~-~~~~-------~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~---~~~ 264 (912)
T PRK05743 196 AEAEVEYHDKTSPSIYVAFPVVDGK-LAAA-------FKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEG---EKL 264 (912)
T ss_pred hhhHhhcccccCceEEEEEEecCcc-hhcc-------cCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCC---CEE
Confidence 9999999999999999999996532 1000 0246999999999999999999999999999999865 689
Q ss_pred eeeHHhHHHHHHHcCCcCcEE-EEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHH
Q psy15223 674 ILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLI 752 (2492)
Q Consensus 674 i~a~~~~~~~~~~~~~~~~~~-~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~ 752 (2492)
|+|+++++++.++.+++...+ .+++|++|.|++|.|||+ ++++||++++||++++|||+||+|||||++||.+
T Consensus 265 i~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~------~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~ 338 (912)
T PRK05743 265 IVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPFY------DRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVV 338 (912)
T ss_pred EEeHHhHHHHHHhhCCcceEEEEEechHhhcCCEEECCCC------CCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHH
Confidence 999999999999988876554 999999999999999998 7899999999999999999999999999999999
Q ss_pred HHHcCCCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeeccccee
Q psy15223 753 FKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFI 832 (2492)
Q Consensus 753 ~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi 832 (2492)
|++||| ++++|||++|+|++++|+|.|+++++|++.|++.|++.|.|++.++++|+||||||||+||++|+++|||+
T Consensus 339 ~~~~~L---~~~~~vd~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi 415 (912)
T PRK05743 339 GQKYGL---EVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFI 415 (912)
T ss_pred HHHcCC---CcccccCCCceEecCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccE
Confidence 999999 88899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHH
Q psy15223 833 NMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIA 912 (2492)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~ 912 (2492)
++++ +++|+++++++++++|+|+++++|+.+||++|+||||||||+||||||+|||++||+++ .+.+++.+++
T Consensus 416 ~~~~------~~~k~~~l~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~g~~~-~~~~~~~~i~ 488 (912)
T PRK05743 416 SMDK------KGLREQALKAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELH-PTPELIEHVA 488 (912)
T ss_pred eCCh------HHHHHHHHHHHcccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEEEECCCCcEe-ecHHHHHHHH
Confidence 9996 35999999999999999999999999999999999999999999999999999999887 4778899999
Q ss_pred HHHhhcCCccccccCchhhcCCCccCceecCCccccccccccccchhcccCccccCCcCeeeeecccccchhhHHHHHHH
Q psy15223 913 KKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLT 992 (2492)
Q Consensus 913 ~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~ 992 (2492)
++++..|++.|++..+.+++|+++..+.+++||||||||||++|+++++.+. +++||+|+|++|+||+|||||+++++
T Consensus 489 ~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~~~--~~~~P~Dl~~~G~Di~r~Wf~~~l~~ 566 (912)
T PRK05743 489 KLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQRP--ELGYPADLYLEGSDQHRGWFQSSLLT 566 (912)
T ss_pred HHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhcCcc--ccCCCceEEEecccccchHHHHHHHH
Confidence 9999999999999998888886567899999999999999999999887543 47899999999999999999999999
Q ss_pred HHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcccccccCHHHHHHHHHHHHHHH
Q psy15223 993 SIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIR 1072 (2492)
Q Consensus 993 ~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~~d~~fs~~~l~~~~~~~~kl~ 1072 (2492)
++++.+.+||++|++|||++|++|+|||||+||+|+|.+++++||||+||||++++++++|++||++.++++.+.+++|+
T Consensus 567 ~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~~~~~~D~~~s~~~l~~~~~~~~kl~ 646 (912)
T PRK05743 567 SVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIR 646 (912)
T ss_pred HHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHhcCCCCCeeecHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhc
Q psy15223 1073 NTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLY 1152 (2492)
Q Consensus 1073 n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~ 1152 (2492)
|++||+++|+.+|++....++...+..+|+|++++++++++++.++|++|+|++|++.+++|++++||++|++++|+|+|
T Consensus 647 N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly 726 (912)
T PRK05743 647 NTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLY 726 (912)
T ss_pred HHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhh
Confidence 99999999998887643333344567899999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHH
Q psy15223 1153 TTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILK 1232 (2492)
Q Consensus 1153 ~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~ 1232 (2492)
+...++..|++++++|+.++..++++|+|||||+|||+|++|+.. ..+|||++.||+.++.+.+..+++.|+.++
T Consensus 727 ~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~~-----~~~sv~~~~wP~~~~~~~~~~~~~~~~~~~ 801 (912)
T PRK05743 727 TDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPGE-----REESVFLEEWPEVPELADDEELLAKWEELL 801 (912)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcccC-----CCCceEEecCCCCccccCCHHHHHHHHHHH
Confidence 987777788999999999999999999999999999999999631 247999999999777666777888999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCchhHHHHHHhHHHHHHhhhccceEEeecCC-------CCceEEEEEec
Q psy15223 1233 KIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKN-------LSEECIIIKPS 1305 (2492)
Q Consensus 1233 ~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~~~~~~l~~~~~~L~~l~~vs~v~i~~~~~-------~~~~~v~v~~~ 1305 (2492)
++|++|++++|.+|+++.|++++++.|+|..++ +.|..+.++|+++|+||+|++....+ .++++|.|.++
T Consensus 802 ~~r~~v~~~i~~~r~~~~i~~~~~~~~~~~~~~---~~l~~~~~~l~~~~~vs~v~~~~~~~~~~~~~~~~~~~v~v~~~ 878 (912)
T PRK05743 802 EVRDEVNKALEEARKEKVIGSSLEAEVTLYADA---ALLESLGDELRFLLIVSQVEVADGPAAAAAAEEVEGLAVKVEKA 878 (912)
T ss_pred HHHHHHHHHHHHhhhccCCCcccceEEEEEcCH---HHHHHHHHHHHHHhhhCceEEecCccccccccccCceEEEEEeC
Confidence 999999999999999999999999999987654 66777778999999999999964211 13578999999
Q ss_pred CCCCCccccccccccCCCCCCCCcchhhhhhc
Q psy15223 1306 IYKKCNRCWHYQADVGERDDYPDLCNRCFNNL 1337 (2492)
Q Consensus 1306 ~~~kC~RCw~~~~~v~~~~~~~~LC~RC~~~v 1337 (2492)
.++||||||+|..++|.++.+++||.||..++
T Consensus 879 ~~~kC~RCW~~~~~~~~~~~~~~~C~rC~~~~ 910 (912)
T PRK05743 879 EGEKCERCWHYREDVGSDAEHPTLCGRCVSNV 910 (912)
T ss_pred CCCCCCCcCCEeCCcCCCCCCCCcChhHHHHh
Confidence 99999999999999988888899999999987
No 7
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.3e-179 Score=1834.98 Aligned_cols=885 Identities=52% Similarity=0.938 Sum_probs=819.7
Q ss_pred hhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccc
Q psy15223 1567 ILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 1646 (2492)
Q Consensus 1567 ~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~ 1646 (2492)
+|+++++++|++||++|+++++|++..+.+.++++|+||+|||||||.||||||+|++++||++||+||+||+|+|+|||
T Consensus 16 ~m~~~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~ 95 (912)
T PRK05743 16 PMRANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGW 95 (912)
T ss_pred CCCCChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCc
Confidence 47899999999999999999999876555567889999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhC
Q psy15223 1647 DCHGMPIEIQIEKLYGK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKK 1723 (2492)
Q Consensus 1647 D~hGlPie~~a~k~~~~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~k 1723 (2492)
||||||||.+|+|++|. ++++++|+++|++|+.++++.|++||++||+++||+++|.||||.|+++++|+|.+|+++
T Consensus 96 D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~ 175 (912)
T PRK05743 96 DCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKK 175 (912)
T ss_pred CCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHC
Confidence 99999999999998753 789999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEE
Q psy15223 1724 GYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALH 1803 (2492)
Q Consensus 1724 Gliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~ 1803 (2492)
|||||+.+||+|||.|+|+|||+||+|+++.++++||+|++.+.. +...+ .+.+++||||||||||||+|||
T Consensus 176 Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~~yv~f~l~~~~-~~~~~-------~~~~l~i~TTrP~Tl~~n~aia 247 (912)
T PRK05743 176 GYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIYVAFPVVDGK-LAAAF-------KDASLVIWTTTPWTLPANQAIA 247 (912)
T ss_pred CCEEecceeEecCCCcCCCchhhHhhcccccCceEEEEEEecCcc-hhccc-------CCCEEEEEeCCChhhhhCeEEE
Confidence 999999999999999999999999999999999999999986532 11000 2469999999999999999999
Q ss_pred EcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceE-EEEecccccccEEeCCCCccccCCCceecEEecCcccc
Q psy15223 1804 VHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITV 1882 (2492)
Q Consensus 1804 v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~ 1882 (2492)
|||+++|++++.++ +.||+|+++++++.+..+.+...+ .+++|++|+|++|.||++ ++++||++++||++
T Consensus 248 v~p~~~Y~~~~~~~---~~~i~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~------~~~~pvi~~~~V~~ 318 (912)
T PRK05743 248 VHPEFDYVLVEVEG---EKLIVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPFY------DRDSPVILGDHVTL 318 (912)
T ss_pred ECCCCeeEEEEcCC---CEEEEeHHhHHHHHHhhCCcceEEEEEechHhhcCCEEECCCC------CCeeeEeCCCccCC
Confidence 99999999999864 579999999999999888766655 999999999999999998 88999999999999
Q ss_pred CCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccc
Q psy15223 1883 DSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSY 1962 (2492)
Q Consensus 1883 ~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~ 1962 (2492)
++|||+||+|||||++||+++++||| ++++++|++|+|+++.|+|.|+++++|+++|++.|+++|.|++.++++|+|
T Consensus 319 ~~GTG~Vh~aPahg~~Dy~~~~~~~L---~~~~~vd~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~y 395 (912)
T PRK05743 319 DAGTGLVHTAPGHGEDDYVVGQKYGL---EVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSY 395 (912)
T ss_pred CCCcCeEEeCCCCCHHHHHHHHHcCC---CcccccCCCceEecCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccC
Confidence 99999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEE
Q psy15223 1963 MHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFF 2042 (2492)
Q Consensus 1963 p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~ 2042 (2492)
|||||||+||++|+++|||+++++ +.+|+++++++++|+|+|+++++++.+||++++||||||||+||||||+|
T Consensus 396 p~~wR~~~pvi~r~~~QWFi~~~~------~~~k~~~l~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~ 469 (912)
T PRK05743 396 PHCWRTKKPVIFRATPQWFISMDK------KGLREQALKAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIF 469 (912)
T ss_pred CeecCCCCEEEEEecCcccEeCCh------HHHHHHHHHHHcccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEE
Confidence 999999999999999999999997 44999999999999999999999999999999999999999999999999
Q ss_pred EECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCCCccCceecccccccccccCcchhhhccCCccccCCcCc
Q psy15223 2043 IHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPA 2122 (2492)
Q Consensus 2043 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~P~ 2122 (2492)
+|++||.+.+ +.+++.++++.++..|++.|++..+.+++|+++..+.|++||||||||||++|++++..+. +.+||+
T Consensus 470 ~~~~~g~~~~-~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~~~--~~~~P~ 546 (912)
T PRK05743 470 YHKETGELHP-TPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQRP--ELGYPA 546 (912)
T ss_pred EECCCCcEee-cHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhcCcc--ccCCCc
Confidence 9999998754 6678889999999999999999998888886567899999999999999999999887544 478999
Q ss_pred eeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccCCCC
Q psy15223 2123 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSK 2202 (2492)
Q Consensus 2123 Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~~~~ 2202 (2492)
|+|++|+||+|||||+++++++++.+.+||++|++|||++|.+|+|||||+||||+|.+++++||||+||||++++++++
T Consensus 547 Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~~~~~~ 626 (912)
T PRK05743 547 DLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVASTDYSG 626 (912)
T ss_pred eEEEecccccchHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q psy15223 2203 DLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQ 2282 (2492)
Q Consensus 2203 d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~ 2282 (2492)
|++|+++.++++.+.+++|+|++||+++++.+|.+....++...+..+|+|+++++++++++++++|++|+|++|++.++
T Consensus 627 D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~ 706 (912)
T PRK05743 627 DVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLH 706 (912)
T ss_pred CeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999999999888765333233345678899999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccC
Q psy15223 2283 IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLH 2362 (2492)
Q Consensus 2283 ~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~w 2362 (2492)
+|++++||++||+.+|+|+|+...++..|++++++|+.+++.++++|+|||||+|||+|+.|+.. ..+||+++.|
T Consensus 707 ~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~~-----~~~sv~~~~w 781 (912)
T PRK05743 707 NFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPGE-----REESVFLEEW 781 (912)
T ss_pred HHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcccC-----CCCceEEecC
Confidence 99999999999999999999987666778899999999999999999999999999999999632 2469999999
Q ss_pred CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeChhhHHHHHHhHHHHHHhhhcccEEEeec
Q psy15223 2363 YKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQI 2442 (2492)
Q Consensus 2363 P~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~~~~~~l~~~~~~L~~l~~vs~v~i~~~ 2442 (2492)
|+.++.+.++.+++.|+.++++|+.|++++|.+|+++.|++++++.++|..++ +.+..+.++|+.+++||+|++...
T Consensus 782 P~~~~~~~~~~~~~~~~~~~~~r~~v~~~i~~~r~~~~i~~~~~~~~~~~~~~---~~l~~~~~~l~~~~~vs~v~~~~~ 858 (912)
T PRK05743 782 PEVPELADDEELLAKWEELLEVRDEVNKALEEARKEKVIGSSLEAEVTLYADA---ALLESLGDELRFLLIVSQVEVADG 858 (912)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceEEEEEcCH---HHHHHHHHHHHHHhhhCceEEecC
Confidence 99888777888889999999999999999999999999999999999987654 667777789999999999999643
Q ss_pred C-------CCCceEEEEEeCCCCCCcccceEecCCCCCCCCCCCChhhHHhhh
Q psy15223 2443 K-------NLSEECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLF 2488 (2492)
Q Consensus 2443 ~-------~~~~~~v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~~~ 2488 (2492)
. +.++++|.|.++.++||||||+|+.+++.++.+++||+||.+||.
T Consensus 859 ~~~~~~~~~~~~~~v~v~~~~~~kC~RCW~~~~~~~~~~~~~~~C~rC~~~~~ 911 (912)
T PRK05743 859 PAAAAAAEEVEGLAVKVEKAEGEKCERCWHYREDVGSDAEHPTLCGRCVSNVE 911 (912)
T ss_pred ccccccccccCceEEEEEeCCCCCCCCcCCEeCCcCCCCCCCCcChhHHHHhc
Confidence 1 113688999999999999999999988877788899999999983
No 8
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-178 Score=1831.04 Aligned_cols=894 Identities=41% Similarity=0.699 Sum_probs=812.2
Q ss_pred hhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccc
Q psy15223 1567 ILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 1646 (2492)
Q Consensus 1567 ~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~ 1646 (2492)
+|+++++++|++||++|+++++|++..+.+.++++|+||+|||||||.||||||+|+|++||++||+||+||+|+|+|||
T Consensus 21 ~m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGw 100 (961)
T PRK13804 21 PMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGW 100 (961)
T ss_pred CCCCChHHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCc
Confidence 57899999999999999999999986655668899999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHh---cc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHH
Q psy15223 1647 DCHGMPIEIQIEKLY---GK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGII 1720 (2492)
Q Consensus 1647 D~hGlPie~~a~k~~---~~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L 1720 (2492)
||||||||.+++|.+ |+ ++++++|++.|++|+.++++.|++||+|||+++||+++|.||||.|+++++|+|.+|
T Consensus 101 D~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l 180 (961)
T PRK13804 101 DCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKF 180 (961)
T ss_pred CCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHH
Confidence 999999999999987 33 578999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhcccc
Q psy15223 1721 FKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQ 1800 (2492)
Q Consensus 1721 ~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ 1800 (2492)
+++|||||+.+||+|||.|+|+|||+||||+++.++++||+|++.+...+ + .++.+++||||||||||||+
T Consensus 181 ~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~~~~v~F~~~~~~~~---~------~~~~~lviwTTtPwTl~an~ 251 (961)
T PRK13804 181 AAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIWVKFPVKDGKGI---L------DSGTYVVIWTTTPWTIPANR 251 (961)
T ss_pred HHCCCEEeCCcceecCCCCCCCccchhcccccccCceEEEEEEecCcccc---c------CCCCeEEEEeCCchhhhhCe
Confidence 99999999999999999999999999999999999999999998653211 0 12469999999999999999
Q ss_pred EEEEcCCCCEEEEEecCCC-------CceehhhHHhHHHHHHHcCCcCceE-EEEecccccccEEeCCCCccccCCCc--
Q psy15223 1801 ALHVHPEFDYALVHIKNDP-------PLLLILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNIDINYNR-- 1870 (2492)
Q Consensus 1801 ai~v~p~~~Y~~~~~~~~~-------~~~~i~a~~~~~~~~~~~~~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~~~~-- 1870 (2492)
||||||+++|++++.++.. ++.+|+|+++++++.+..+.+.+.+ .+++|++|+|++|.|||+ ++
T Consensus 252 aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~------~~~~ 325 (961)
T PRK13804 252 AISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLD------GLDG 325 (961)
T ss_pred EEEECCCCceEEEEeccccccccccCCcEEEeHHHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCC------Cccc
Confidence 9999999999999975310 2579999999999998887766655 999999999999999998 66
Q ss_pred ---eecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCC--------CCCccHHhhh
Q psy15223 1871 ---LSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPL--------FGGMSIWKAS 1939 (2492)
Q Consensus 1871 ---~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~--------~~G~~v~~a~ 1939 (2492)
.+||++++||++++|||+||+|||||++||+++++|||. ++.++||++|+|++++|. |+|+.+.+|+
T Consensus 326 ~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~--~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~ 403 (961)
T PRK13804 326 YEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRT--EIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDAN 403 (961)
T ss_pred ccceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCC--cccccCCCCeEEccCCCccccccccccCCcchhhhh
Confidence 899999999999999999999999999999999999983 456799999999998877 8999999999
Q ss_pred HHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHH
Q psy15223 1940 KLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKS 2019 (2492)
Q Consensus 1940 ~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~ 2019 (2492)
+.|++.|+++|.|++.++++|+||||||||+|||+|+++|||+++++. ..++..||+++++++++|+|+|+++++++.+
T Consensus 404 ~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~-~~~~~~~k~~al~~i~~v~~~P~~~~~r~~~ 482 (961)
T PRK13804 404 KAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKD-LGDGTTLRSRALDAIDKTRFVPAAGQNRLYN 482 (961)
T ss_pred HHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcCCc-ccchHHHHHHHHHHHhccEEECHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999971 1122349999999999999999999999999
Q ss_pred hhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCC---CccCceeccccc
Q psy15223 2020 MILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD---DAVNYKKSNDTL 2096 (2492)
Q Consensus 2020 ~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~---~~~~~~~~~dvl 2096 (2492)
||++++||||||||+||||||+|||++ ++.. .+.+++.++.+.++..|++.||+....+++++ ++..++|++|||
T Consensus 483 ~i~~~~DWcISRQR~WG~PIP~~~~~~-~~~~-~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~Dvl 560 (961)
T PRK13804 483 MIEDRPDWVISRQRAWGVPIPIFVAED-GEIL-MDEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDIL 560 (961)
T ss_pred HHhcCccceeeeeccCCceeeEEEcCC-CCEe-ccHHHHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcce
Confidence 999999999999999999999999975 4443 45678889999999999999998877777764 356799999999
Q ss_pred ccccccCcchhhhccCCccccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCc
Q psy15223 2097 DVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNI 2176 (2492)
Q Consensus 2097 DvWfdSg~~~~~~~~~~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNv 2176 (2492)
|||||||++|..+++.+. ++.||+|+|++|+||+|||||++++++.++.+.+||++|++|||++|.+|+|||||+|||
T Consensus 561 DvWFdSg~s~~~~~~~~~--~~~~PaD~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNv 638 (961)
T PRK13804 561 DVWFDSGSTHAFVLEDRP--DLKWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNT 638 (961)
T ss_pred eeeecCCCCccccccCCc--ccCCCceEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCc
Confidence 999999999988776554 467999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhhccChhHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHH
Q psy15223 2177 IKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAII 2256 (2492)
Q Consensus 2177 i~p~~ii~~yGaD~lR~~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~ 2256 (2492)
|+|.+++++||||+||||++++++++|++|+++.++++.+.+++|+|++||+++++.+|.+....++...+..+|+|+++
T Consensus 639 IdP~~ii~~yGaD~lRl~lls~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~ 718 (961)
T PRK13804 639 VSPQDVIKQSGADILRLWVASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLH 718 (961)
T ss_pred CCHHHHHHhcCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHH
Confidence 99999999999999999999989999999999999999999999999999999999888765333233456788999999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHH
Q psy15223 2257 NITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFT 2336 (2492)
Q Consensus 2257 ~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~ 2336 (2492)
+++++++.++++|++|+|++|++.+++|++++|||+||+.+|+|+|+...++..+++++++|+.+++.++++|+|||||+
T Consensus 719 ~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~ 798 (961)
T PRK13804 719 RLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFT 798 (961)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999877777888999999999999999999999999
Q ss_pred HHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeCh-
Q psy15223 2337 SEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINK- 2415 (2492)
Q Consensus 2337 aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~- 2415 (2492)
|||||+.|++. ..+||+++.||+.++.+.++++++.|+.++.+|..|++++|++|+++.|++++++.|+|.+++
T Consensus 799 aEeiw~~L~~~-----~~~sv~l~~wP~~~~~~~d~~~~~~~~~~~~~r~~v~~~le~~R~~~~i~~~~e~~v~l~~~~~ 873 (961)
T PRK13804 799 AEEAWLYRYPE-----EEVSVHLEQFPETPAFWRDDALAEKWRKFRAVRDVVTGALEEERAAKRIGSSLEAAPTVYIADP 873 (961)
T ss_pred HHHHHHhcccC-----CCCceEecCCCCCcchhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEEcCCH
Confidence 99999999842 236999999999887777888888999999999999999999999999999999999987643
Q ss_pred hhHHHHHHhHHHHHHhhhcccEEEeecCC---------CCceEEEEEeCCCCCCcccceEecCCCCCCCCCCCChhhHHh
Q psy15223 2416 LDFEILNEFGEELKFFLLTSSVSLFQIKN---------LSEECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNN 2486 (2492)
Q Consensus 2416 ~~~~~l~~~~~~L~~l~~vs~v~i~~~~~---------~~~~~v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~ 2486 (2492)
...+.+..+ +|+++++||+|++...+. ..+++|.|.++.++||||||+|+.++|.++++++||+||.+|
T Consensus 874 ~~~~~l~~~--~l~~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~ 951 (961)
T PRK13804 874 ELLAALEGL--DFAEICITSQLTVAAGEAPADAFRLDEVEGVAVVVEKAEGEKCARSWRITPDVGSDPYYPDVSPRDAKA 951 (961)
T ss_pred HHHHHHHHH--HHHHHhhhCceEEecCCCcchhhcccccCceEEEEEeCCCCCCcCCCCCcCCcCCCCCCCCcChhHHHH
Confidence 445566655 599999999999964221 025789999999999999999999888888888999999999
Q ss_pred hhc
Q psy15223 2487 LFA 2489 (2492)
Q Consensus 2487 ~~~ 2489 (2492)
|.+
T Consensus 952 ~~~ 954 (961)
T PRK13804 952 LRE 954 (961)
T ss_pred HHh
Confidence 974
No 9
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=1.1e-177 Score=1821.00 Aligned_cols=896 Identities=40% Similarity=0.725 Sum_probs=808.8
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
|+++++++|++|+++|+++++|++..+.+ .+++|+||+|||||||.||||||+|++++||++||+||+||+|+|+||||
T Consensus 1 m~~~~~~~E~~~~~~W~~~~~y~~~~~~~-~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D 79 (974)
T PLN02843 1 MRANSVTREPEIQKLWEENQVYKRVSDRN-NGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWD 79 (974)
T ss_pred CCCChHHhhHHHHHHHHHCCCcccccccc-CCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccC
Confidence 68999999999999999999999865433 34679999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhC
Q psy15223 1648 CHGMPIEIQIEKLYGK----NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKK 1723 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~~----~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~k 1723 (2492)
|||||||.+++|.++. ++++++|+++|++|+.++++.|++||+|||+++||+++|+||||.|+++++|+|.+|+++
T Consensus 80 ~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~ 159 (974)
T PLN02843 80 CHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLN 159 (974)
T ss_pred CCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHC
Confidence 9999999999998763 689999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeCcccccCCCCCccccccccccee-eecceEEEEEeccCchh-hHhhhccCCCCCCccEEEEeecCcchhccccE
Q psy15223 1724 GYVYHGLKPVNWCFDCKSALAEAEIEYKK-KYDFSIYVGFSFSEPEK-IKSIFNLKNLPSGKGYIVIWTSTPWTIPANQA 1801 (2492)
Q Consensus 1724 Gliyr~~~~v~wcp~~~t~Lad~Evey~~-~~~~~~yv~f~~~~~~~-~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~a 1801 (2492)
|||||+.+||+|||+|+|+|||+||+|++ +.++++||+|++.+... +.... .. ...+.+++||||||||||||+|
T Consensus 160 GlIyr~~kpV~Wcp~~~Talae~Evey~e~~~~~s~yv~f~~~~~~~~~~~~~--~~-~~~~~~lviwTTtPwTlpan~A 236 (974)
T PLN02843 160 GYIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVAFPVVSPSETSPEEL--EE-FLPGLSLAIWTTTPWTMPANAA 236 (974)
T ss_pred CCEEecceeeeecCCCCCcchHhHhcccCCccCceEEEEEEecCCcccccccc--cc-ccccceEEEEeCcchhhccCcE
Confidence 99999999999999999999999999997 57999999999975321 10000 00 0013699999999999999999
Q ss_pred EEEcCCCCEEEEEecCC----------------------CCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeC
Q psy15223 1802 LHVHPEFDYALVHIKND----------------------PPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFH 1859 (2492)
Q Consensus 1802 i~v~p~~~Y~~~~~~~~----------------------~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~ 1859 (2492)
|||||+++|++|+.+++ +.+.+|+|+++++++.+.++.+...+++++|++|+|++|.|
T Consensus 237 iaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~ 316 (974)
T PLN02843 237 VAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIH 316 (974)
T ss_pred EEECCCCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEEC
Confidence 99999999999997521 12579999999999999887652334999999999999999
Q ss_pred CCCccccCCCceecEE-ecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHH-h
Q psy15223 1860 PLSNIDINYNRLSPIY-LGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIW-K 1937 (2492)
Q Consensus 1860 Pl~~~~~~~~~~~pi~-~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~-~ 1937 (2492)
||+ ++++||+ +++||++++|||+||+|||||++||+++++||| ++++++|++|+|++++|+|+|+.|+ +
T Consensus 317 P~~------~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l---~~~~~vd~~G~~~~~~~~~~G~~v~~~ 387 (974)
T PLN02843 317 PLY------NRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGL---PLLSPVDDAGKFTEEAGQFSGLSVLGE 387 (974)
T ss_pred CCC------CCceeEEecCCccCCCCCCCeEEeCCCCCHHHHHHHHHcCC---CcccccCCCceEccCCcccCCcEehhc
Confidence 998 7889996 589999999999999999999999999999999 8999999999999999999999998 8
Q ss_pred hhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHH
Q psy15223 1938 ASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRL 2017 (2492)
Q Consensus 1938 a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~ 2017 (2492)
||+.|++.|+++|.|++.+.++|+||||||||+|||+|+++|||+++++ ||+++++++++|+|+|+++++++
T Consensus 388 a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~--------~k~~al~~~~~v~~~P~~~~~r~ 459 (974)
T PLN02843 388 GNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEG--------FRQAALDAIDKVKWIPAQGENRI 459 (974)
T ss_pred chHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHH--------HHHHHHHHHhccEEEChHHHHHH
Confidence 9999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred HHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCCC----ccCceecc
Q psy15223 2018 KSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDD----AVNYKKSN 2093 (2492)
Q Consensus 2018 ~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~----~~~~~~~~ 2093 (2492)
.+||++++||||||||+||||||+|+|.+|+++. .+.+.+.+++++++..|++.||..++++++|+. ...+.|++
T Consensus 460 ~~~i~~~~DWcISRQr~WG~pIP~~~~~~~~~~~-~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~ 538 (974)
T PLN02843 460 RAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPL-MNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGT 538 (974)
T ss_pred HHHHhcCcceeeeeccccccEEEEEEEcCCCCEe-echhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecc
Confidence 9999999999999999999999999999998764 566888999999999999999998888888742 45699999
Q ss_pred cccccccccCcchhhhccCCccccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeecc
Q psy15223 2094 DTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSK 2173 (2492)
Q Consensus 2094 dvlDvWfdSg~~~~~~~~~~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~ 2173 (2492)
||||||||||++|..+++.+. ++.||+|+|++|+||+||||++++++++++.+..||+++++|||++|.+|+|||||+
T Consensus 539 DvlDvWFdSg~~~~~~~~~~~--~~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSl 616 (974)
T PLN02843 539 DTMDVWFDSGSSWAGVLGSRE--GLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSL 616 (974)
T ss_pred cccccchhcCCChHHHhcccc--ccCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCC
Confidence 999999999999988876554 567999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCcchhhh---------ccChhHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccc
Q psy15223 2174 GNIIKPQKLCN---------LFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKI 2244 (2492)
Q Consensus 2174 GNvi~p~~ii~---------~yGaD~lR~~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~ 2244 (2492)
||||+|.++++ +||+|+||||++++++++|++|+.+.++++.+.+++|||+++|+++|+.+|++. ...+.
T Consensus 617 GNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~-~~~~~ 695 (974)
T PLN02843 617 GNVVDPRLVIEGGKNQKQEPAYGADVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPD-NAVPY 695 (974)
T ss_pred CCcCCHHHHHhhccccccccccChHHHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcc-cccCc
Confidence 99999999999 799999999999999999999999999999999999999999999999888652 22333
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHH
Q psy15223 2245 SDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQS 2324 (2492)
Q Consensus 2245 ~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~ 2324 (2492)
.++..+|+|++++++++++++.++|++|+|++|++.+++|++.++||+||+.+|+|+|+...++..|++++++|+.+++.
T Consensus 696 ~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~ 775 (974)
T PLN02843 696 EDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLS 775 (974)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999998876677788999999999999
Q ss_pred HHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy15223 2325 LLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNS--KKLLYKYMILKKIRSKVMQKLEKIRSTGIIG 2402 (2492)
Q Consensus 2325 l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~--~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~ 2402 (2492)
++++|+|||||+|||||+.|+... .....+||+++.||+.++.+.+ ..+.+.|+.++++|.+|++++|.+|+++.|+
T Consensus 776 l~~LLaPimPf~aEEiw~~L~~~~-~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~l~~~r~~~~i~ 854 (974)
T PLN02843 776 LLRAIAPILPHLAEDAWQNLPFQE-DGSAAESVFEAGWPTPNEEWLSFPAEDVDFWSLLLEVRDEVNKVLESARNGKLIG 854 (974)
T ss_pred HHHHHhhhhhHHHHHHHHhccccc-cCCCCCceEecCCCCCchhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999997420 0012469999999998766654 4566779999999999999999999999999
Q ss_pred CCceeEEEEEeCh-hhHHHHHHh------HHHHHHhhhcccEEEeecCC----------------CCceEEEEEeCCCCC
Q psy15223 2403 SSLQAEIILKINK-LDFEILNEF------GEELKFFLLTSSVSLFQIKN----------------LSEECIIIKPSIYKK 2459 (2492)
Q Consensus 2403 ~~~~~~v~i~~~~-~~~~~l~~~------~~~L~~l~~vs~v~i~~~~~----------------~~~~~v~v~~~~~~k 2459 (2492)
+++++.|+|..++ +..+.++.+ .++|+++++||+|++...+. ..+++|.|.++.++|
T Consensus 855 ~~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~vs~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~k 934 (974)
T PLN02843 855 ASLEAKVYLHASDASLAARLAELCGASNGADELRRIFITSQVEVVSSEDDETAACGSYTGEYVEGAGRVWVGVSRADGSK 934 (974)
T ss_pred cccceeEEEEeCCHHHHHHHHhhccccchHHHHHHHhccCceEeecCCCccccccchhccccccccCceEEEEEeCCCCC
Confidence 9999999987643 355667663 37899999999999964221 125788999999999
Q ss_pred CcccceEecCCCCCCCCCCCChhhHHhhhc
Q psy15223 2460 CNRCWHYQADVGERDDYPDLCNRCFNNLFA 2489 (2492)
Q Consensus 2460 C~RCw~~~~~~~~~~~~~~lC~rC~~~~~~ 2489 (2492)
|||||+|+.++|.++++++||+||.+||.+
T Consensus 935 C~RCW~~~~~~~~~~~~~~lC~rc~~~~~~ 964 (974)
T PLN02843 935 CERCWNYSPAVGSFSDHPTLCERCYPVVIA 964 (974)
T ss_pred CCCCCCEeCCcCCCCCCCCcChhhHHHHcC
Confidence 999999999998888888999999999974
No 10
>KOG0433|consensus
Probab=100.00 E-value=2.8e-171 Score=1548.29 Aligned_cols=873 Identities=35% Similarity=0.597 Sum_probs=785.5
Q ss_pred hhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccc
Q psy15223 1567 ILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 1646 (2492)
Q Consensus 1567 ~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~ 1646 (2492)
+++.|...++.+.++-|+...++..+ ....+++.|+++| +||+||||||+|+|++||+.||+.++|++|+|+|||
T Consensus 27 ~v~~Ns~gr~~q~~evi~~~~~~~~q-ls~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGw 101 (937)
T KOG0433|consen 27 LVHFNSTGRIGQVIEVIQPPEILSSQ-LSDQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGW 101 (937)
T ss_pred ccccccccchHHHHHHhCChHHHHHH-HhhccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCC
Confidence 78889999999999999988877654 3456788999999 999999999999999999999999999999999999
Q ss_pred ccCChHHH-HHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHh
Q psy15223 1647 DCHGMPIE-IQIEKLYGK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFK 1722 (2492)
Q Consensus 1647 D~hGlPie-~~a~k~~~~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~ 1722 (2492)
|||||||| .+|.+.+.. +++|.|+|++++.+|.+.|++|++.|+|||++.||.++|.|+||+|+..++++|.+|++
T Consensus 102 DchGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lye 181 (937)
T KOG0433|consen 102 DCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYE 181 (937)
T ss_pred CcCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHh
Confidence 99999999 688776654 67999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCcccccCCCCCcccccccccceee-ecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccE
Q psy15223 1723 KGYVYHGLKPVNWCFDCKSALAEAEIEYKKK-YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQA 1801 (2492)
Q Consensus 1723 kGliyr~~~~v~wcp~~~t~Lad~Evey~~~-~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~a 1801 (2492)
||||||+.|||||||+++|||||+|+||.+. .|+|+|++|++...+.-+ ... ......+|++||||||||||+|.|
T Consensus 182 kgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y~~F~L~~~S~~~--~~~-~~~~~~iyaLVWTTTPWTlPsN~A 258 (937)
T KOG0433|consen 182 KGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKLINFSSSA--HSE-DSKIPQIYALVWTTTPWTLPSNNA 258 (937)
T ss_pred ccceeccCCcceecCcchhhhhhhhccCCcCCcceeEEEEEeccCCcccc--ccC-CCccCcEEEEEEeCCCccccccce
Confidence 9999999999999999999999999999875 699999999997654211 111 112345899999999999999999
Q ss_pred EEEcCCCCEEEEEecCC-CCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCcc
Q psy15223 1802 LHVHPEFDYALVHIKND-PPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYI 1880 (2492)
Q Consensus 1802 i~v~p~~~Y~~~~~~~~-~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V 1880 (2492)
|||||+..|++++.++. .+++++||.++++++-...+.+...++++.|.+|+|.+|.||+.+ +...|++.++||
T Consensus 259 i~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~-----~~~~P~l~g~hV 333 (937)
T KOG0433|consen 259 ISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLHN-----ELGLPILEGPHV 333 (937)
T ss_pred eeeccccceEEEEeccCCcceEEEEccchhhhhhhhcCcceeeeeecchhhccCceecCcCcc-----ccCCccccccce
Confidence 99999999999998732 247899999999998776665555558999999999999999974 677999999999
Q ss_pred ccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCC-CCCCccHH-hhhHHHHHHHHhcCCcceeeee
Q psy15223 1881 TVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLP-LFGGMSIW-KASKLICSYLKKSKTLFNIEMF 1958 (2492)
Q Consensus 1881 ~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~-~~~G~~v~-~a~~~i~~~L~~~g~l~~~~~~ 1958 (2492)
+++.|||+||+|||||++||.++.++|| ++.++||+.|+|+.+++ .+.|+.|. |+++.|+..|. ..+++.++|
T Consensus 334 T~~~GTGLVHTAP~HG~eDYlv~l~~~l---~~~s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~--~~iv~~sky 408 (937)
T KOG0433|consen 334 TDTVGTGLVHTAPAHGFEDYLVAISKGL---RVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLN--HDIVHVSKY 408 (937)
T ss_pred ecCcccceeecCCCCChHHHHHHhhcCC---CcccccCCCCceecccccccccchhhccccHhHHHHHh--hhhhhhhcc
Confidence 9999999999999999999999999999 99999999999999987 79999998 58899999998 789999999
Q ss_pred ccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCce
Q psy15223 1959 EHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVP 2038 (2492)
Q Consensus 1959 ~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~p 2038 (2492)
.|+||++||||+|+|+|+|+|||+++++ +|..+.+++++|+|+|..+.+++..++..|++|||||||.||+|
T Consensus 409 ~HsYPYDWRTKKPvIiRAseQWFi~~e~--------~k~~A~~al~~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvP 480 (937)
T KOG0433|consen 409 VHSYPYDWRTKKPVIIRASEQWFIDVEE--------IKKRASMALDDVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVP 480 (937)
T ss_pred cccCCcccccCCceEEecchhheeeHHh--------hhhHHHHHHhhceeCCcchHHHHHHHHcCCCcceeeeccccCCc
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred eeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCC--------CccCceecccccccccccCcchhhhc
Q psy15223 2039 IAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD--------DAVNYKKSNDTLDVWFDSGITHQTVI 2110 (2492)
Q Consensus 2039 IP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~--------~~~~~~~~~dvlDvWfdSg~~~~~~~ 2110 (2492)
||++|++..+++ +...+.+.|+...++++|+|.||+.++++++|. ...+|.|++||||||||||.+|.+++
T Consensus 481 IP~ly~k~~~~~-l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~ 559 (937)
T KOG0433|consen 481 IPALYDKNGGSY-LSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVL 559 (937)
T ss_pred ceeEEecCCCce-eehHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhcccchhHHHhccCCceeeeEecCCCcceeec
Confidence 999999998876 478889999999999999999999999998873 24679999999999999999999988
Q ss_pred cCCccccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhc-----
Q psy15223 2111 RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL----- 2185 (2492)
Q Consensus 2111 ~~~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~----- 2185 (2492)
+.. ...++|+|+||.||+|||||++|++++|..+++||+.|++|||++|++|.|||||+||||+|..+++.
T Consensus 560 ~~~----~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~p 635 (937)
T KOG0433|consen 560 DNE----REHVADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQP 635 (937)
T ss_pred CCC----CCcceeeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCC
Confidence 752 35789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -cChhHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHH
Q psy15223 2186 -FGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKE 2264 (2492)
Q Consensus 2186 -yGaD~lR~~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~ 2264 (2492)
||+|+||||++++++..|+..+++.|+++.+.+.|+||++||+++|+.++++....++..++.-+|+++|..|++++++
T Consensus 636 ayGaD~LR~WVA~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~ 715 (937)
T KOG0433|consen 636 AYGADGLRFWVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKR 715 (937)
T ss_pred CccccceeeeeecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998878888889999999999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHc
Q psy15223 2265 ILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 2344 (2492)
Q Consensus 2265 v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L 2344 (2492)
+++.|++|+|+++++.|..|++++||++||+++||||||+..++..|+++|++|.+++..++..++||+||++||+||+|
T Consensus 716 i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~l 795 (937)
T KOG0433|consen 716 IIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHL 795 (937)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCeeeccCCCCCccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeChhhHHHHH
Q psy15223 2345 SDKNFYIESGETIFTQLHYKLPKVYNSKKLLY--KYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILN 2422 (2492)
Q Consensus 2345 ~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~--~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~~~~~~l~ 2422 (2492)
+.. .+-+|...||.+...+.....++ .|..+++.|....+.+..++..+.++..+++.+.+.+..
T Consensus 796 P~~------~~~~f~~k~~~l~s~~~~~~~~~~~~~~~vl~~~~~~~~~l~la~~~~~~~s~L~~~~~~ht~~------- 862 (937)
T KOG0433|consen 796 PGS------HEKIFRLKWEDLHSGLLTPHDQLSKHMKFVLEVRNELESTLGLAIDTSKKGSVLQVTPEYHTIR------- 862 (937)
T ss_pred CCC------CCcccccCccccchhhcCchhHHHHHHHHHHHHHHhHHHHHHhhhhhhhccceEEEEEeecccc-------
Confidence 954 12399999999988777654433 477889999999999998888888888888887776541
Q ss_pred HhHHHHHHhhhcccEEEeecCCC-----------CceEEEEEeCCCCCCcccceEecCCCCCCCCCCCChhhHHhhhc
Q psy15223 2423 EFGEELKFFLLTSSVSLFQIKNL-----------SEECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLFA 2489 (2492)
Q Consensus 2423 ~~~~~L~~l~~vs~v~i~~~~~~-----------~~~~v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~~~~ 2489 (2492)
.....|+++++++++++...... -+.+....++.+.||+|||+++.. ++.||.||.+++..
T Consensus 863 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~vE~~~~~~~~~~~~ra~~~~c~rcw~~~~~------~~~lc~rc~~~~~~ 934 (937)
T KOG0433|consen 863 IYESELPELLNVSQVILHENRDENSVELVESRLRYCERCRKHRATFSRCVRCWDLRKQ------DPPLCLRCQDLRFQ 934 (937)
T ss_pred cchhHHHHHHHHhhhhhhhhhcccchHHHHhhhHHHHHHHHHHhcccccHHHHhhhcc------CCcccchHHHHHhh
Confidence 11234555555555554443211 123344568999999999999863 34599999998754
No 11
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=2.2e-158 Score=1628.44 Aligned_cols=883 Identities=25% Similarity=0.426 Sum_probs=739.5
Q ss_pred Cccceeeccchhhh----hhhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHH
Q psy15223 1552 KRILRTETASLVAL----AILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627 (2492)
Q Consensus 1552 ~rILR~ETA~~~~~----~~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~D 1627 (2492)
.++.+.|.|...-. -.++++++++|++|+++|+++++|++..+.+.++++|+|++|||||||.||||||+|++++|
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikD 129 (1205)
T PTZ00427 50 VRIKTMEGAEMVTVTFTGVSENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKD 129 (1205)
T ss_pred cccccccccccccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHH
Confidence 34554444433321 34578899999999999999999998655456778899999999999999999999999999
Q ss_pred HHHHHHHHCCCccccccccccCChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy15223 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDN 1700 (2492)
Q Consensus 1628 ii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~ 1700 (2492)
+++||+||+||+|+|+|||||||||||.+++|.+|. ++++++|+++|++|+.++.+.|+++|+|||+|+||++
T Consensus 130 ii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~ 209 (1205)
T PTZ00427 130 CVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKN 209 (1205)
T ss_pred HHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCC
Confidence 999999999999999999999999999999999874 3799999999999999999999999999999999999
Q ss_pred eeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccc--cceeeecceEEEEEeccCchhh--------
Q psy15223 1701 SYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI--EYKKKYDFSIYVGFSFSEPEKI-------- 1770 (2492)
Q Consensus 1701 ~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Ev--ey~~~~~~~~yv~f~~~~~~~~-------- 1770 (2492)
+|.||||.|++.++|+|.+|+++|||||+.+||+|||.|+|+|||+|| +|++..+|++||+|++.+....
T Consensus 210 ~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~ 289 (1205)
T PTZ00427 210 DYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIE 289 (1205)
T ss_pred CcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeeccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999 8999999999999999753100
Q ss_pred ------Hh----hhcc---CC--C---------CCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhh
Q psy15223 1771 ------KS----IFNL---KN--L---------PSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILA 1826 (2492)
Q Consensus 1771 ------~~----~~~~---~~--~---------~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a 1826 (2492)
.. .+.. .. . ..++.+++||||||||||||+||||||+++|+.++... +++.+|+|
T Consensus 290 ~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~-~~~~~i~a 368 (1205)
T PTZ00427 290 EDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVK-SNRVVIVG 368 (1205)
T ss_pred ccccccccceeeccccccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecC-CCeEEEEe
Confidence 00 0000 00 0 01246999999999999999999999999999998632 24789999
Q ss_pred HHhHHHHHHHcCC--cCceE-EEEecccccccEEeCCCCccc---cCCCceecEEecCccccCCCCceEEcCCCCChhhH
Q psy15223 1827 FNLVKSCLKKFGF--KGNII-GICKGIKLSKINFFHPLSNID---INYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDF 1900 (2492)
Q Consensus 1827 ~~~~~~~~~~~~~--~~~~v-~~~~G~~l~g~~~~~Pl~~~~---~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~ 1900 (2492)
+++++.++++.+. +.++| .+++|++|+|++|.+|+..+. +..++.+||++++||++++|||+||+|||||++||
T Consensus 369 ~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy 448 (1205)
T PTZ00427 369 ECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDF 448 (1205)
T ss_pred hHHHHHHHHhhcccccccEEEEEeechhhCCCeeeCCccccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHH
Confidence 9999999988764 34555 999999999999998873211 11267899999999999999999999999999999
Q ss_pred HHHHHcCCCC--C-CcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeec
Q psy15223 1901 LIFKKQNMKD--S-DIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTT 1977 (2492)
Q Consensus 1901 ~~~~~~~l~~--~-~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~ 1977 (2492)
++|++|||+. . ++++|+|++|+|++++|.|+|+.|++|++.|++.|+++|.|++.+++.|+||||||||+|||++++
T Consensus 449 ~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~ 528 (1205)
T PTZ00427 449 RVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAI 528 (1205)
T ss_pred HHHHHcCCCCccccccccccCCCceecCCCcccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEec
Confidence 9999999932 1 368999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCCcchhHHHHHHHHHhhhcceEecccc-hhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHH
Q psy15223 1978 LQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG-KDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLE 2056 (2492)
Q Consensus 1978 ~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~-~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~ 2056 (2492)
+||||++++ +++++++++++++|+|++. +++|.+||++++|||||||||||||||+|+|++|+.... ..
T Consensus 529 ~QWFI~~~~--------~k~~~l~~~~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~~~~~~~--i~ 598 (1205)
T PTZ00427 529 PAWFIRVSN--------STNELVKNNETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEKMETVIC--VE 598 (1205)
T ss_pred ceeEEeCcH--------HHHHHHHcCCccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCCCCeEec--cC
Confidence 999999998 9999999999999999998 699999999999999999999999999999998876431 22
Q ss_pred HHHHHHHHHhhcCc-cccccc-chhhhc-CC--CccCceecccccccccccCcchhhhccCC-----ccccCCcCceeee
Q psy15223 2057 LIELIAKKIELNGI-EIWQNL-DIKEFL-GD--DAVNYKKSNDTLDVWFDSGITHQTVIRGS-----HKKQLIFPADLYL 2126 (2492)
Q Consensus 2057 ~~~~i~~~~~~~g~-~~w~~~-~~~~~~-~~--~~~~~~~~~dvlDvWfdSg~~~~~~~~~~-----~~~~~~~P~Dl~~ 2126 (2492)
.++++.+.....+. +.|... +...+. |+ ....++|++||||||||||++|++.+..+ ..++.+||+|+++
T Consensus 599 s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~ 678 (1205)
T PTZ00427 599 SIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIA 678 (1205)
T ss_pred CHHHHHHHhccccchhhcccccChhhccCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEE
Confidence 23333322221122 234331 111122 21 12359999999999999999999988642 2335689999999
Q ss_pred cccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhcc-CC-CCcc
Q psy15223 2127 EGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DY-SKDL 2204 (2492)
Q Consensus 2127 ~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~-~~-~~d~ 2204 (2492)
+|.||+||||+++++.+.+++++.||++|++||||+|++|+|||||+||||+|.++|++||||+|||||+++ .. ++|+
T Consensus 679 eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~~~~~~Dl 758 (1205)
T PTZ00427 679 EGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENL 758 (1205)
T ss_pred EecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcCCCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974 44 6899
Q ss_pred cccHHHHHH-HHHHHHHHHHHHHHHHhcCCCCC--------CCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHH
Q psy15223 2205 SISNEILNR-VVETYRRIRNTLRFLLANTSDFN--------PNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFH 2275 (2492)
Q Consensus 2205 ~fs~~~l~~-~~~~~~kl~n~~r~~~~~~~~~~--------~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~ 2275 (2492)
+|+++.+.+ ..+.++++||+++|+.+++.++. +..... ......+|+||+++++++++.++++|++|+|+
T Consensus 759 ~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~-~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~ 837 (1205)
T PTZ00427 759 KFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYI-YKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLY 837 (1205)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccc-cccCCHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 999998864 56778999999999988765332 111000 12346789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCc-c----
Q psy15223 2276 MIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNF-Y---- 2350 (2492)
Q Consensus 2276 ~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~-~---- 2350 (2492)
+|++.|++|++ ++|+||++++|+|+|.... ..++.+++++|+++|+.+++||||||||+|||||+.|+.... .
T Consensus 838 ~A~~~i~~Fi~-~lsnwYIe~~K~rl~~~~~-~~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~~~~~~~~~~ 915 (1205)
T PTZ00427 838 NVLPKLLQFIE-NLTNWYIRLNRDRMRGSLG-EENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRRVKSTNEHNE 915 (1205)
T ss_pred HHHHHHHHHHH-HhccHHHHHcchhhccCCC-cHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhhccccccccc
Confidence 99999999996 6999999999999997532 345678999999999999999999999999999999964100 0
Q ss_pred --------------ccCCCCeeeccCCCCCccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeE-EEEEe-
Q psy15223 2351 --------------IESGETIFTQLHYKLPKVY-NSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAE-IILKI- 2413 (2492)
Q Consensus 2351 --------------~~~~~sV~~~~wP~~~~~~-~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~-v~i~~- 2413 (2492)
....+|||++.||+.++.. .|+++++.|+.++ .+...+|++|++.+++.+.+.. ++|..
T Consensus 916 ~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~~~d~~~e~~~~~~~----~ii~~~R~~R~~~~i~~r~pl~~~~v~~~ 991 (1205)
T PTZ00427 916 NNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKYIIDYEIIELIEKMK----DVILLGRVLRERRKVASKKPLKSITILHP 991 (1205)
T ss_pred cccccccccccccccCCCCeeEeeCCCCCcchhccCHHHHHHHHHHH----HHHHHHHHHHHHcCCCCCCccceeEEecC
Confidence 0013699999999987665 5777777776664 5778889999999988877654 44543
Q ss_pred ChhhHHHHHHhHHHHHHhhhcccEEEeecCCCCceEEEEEe
Q psy15223 2414 NKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKP 2454 (2492)
Q Consensus 2414 ~~~~~~~l~~~~~~L~~l~~vs~v~i~~~~~~~~~~v~v~~ 2454 (2492)
+....+.++.+.+.|++.++|.+|++..... .+.+++.+
T Consensus 992 ~~~~~~~~~~~~~~i~~e~nv~~v~~~~~~~--~~~~~~~p 1030 (1205)
T PTZ00427 992 NESYFKNFDQISNYIKEELNVLNVECSNDTS--CLDFSAIP 1030 (1205)
T ss_pred cHHHHHHHHHHHHHHHHhhCcceEEEEecCc--eEEEEEEe
Confidence 3445566788889999999999999876532 24444443
No 12
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.2e-158 Score=1639.04 Aligned_cols=837 Identities=24% Similarity=0.421 Sum_probs=722.2
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc---
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK--- 513 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~--- 513 (2492)
.+|++.. .++++|+|+|+||||||||.||||||+|+|+|||++||+||+||+|+|+|||||||||||.+|+|.+|.
T Consensus 25 ~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~ 104 (1159)
T PLN02882 25 DAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRR 104 (1159)
T ss_pred CCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCc
Confidence 4565544 456788999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCC
Q psy15223 514 ----NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 589 (2492)
Q Consensus 514 ----~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~ 589 (2492)
.+++++|+++|++++.++++.|+++|+|||+|+||+++|.||||.|++.++|+|.+|+++|||||+.+||+|||.|
T Consensus 105 ~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v~wcp~~ 184 (1159)
T PLN02882 105 DDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTAC 184 (1159)
T ss_pred cchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeEeecCCC
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccccccc--cccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecC
Q psy15223 590 KSALAEAEI--EYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKN 667 (2492)
Q Consensus 590 ~taLae~Ev--ey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~ 667 (2492)
+|+||++|+ +|+++.++++||+|++.+.. .+.+++||||||||||||+||||||+++|++++...
T Consensus 185 ~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~-------------~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~ 251 (1159)
T PLN02882 185 KTPLSNFEAGLNYKDVSDPAVMVSFPIVGDP-------------DNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKY 251 (1159)
T ss_pred CCCcchhhhhhhcccCCCcEEEEEEEecCCC-------------CCcEEEEEeCCccccccCeEEEECCCCcEEEEEecC
Confidence 999997666 89999999999999986521 236999999999999999999999999999998642
Q ss_pred CCCceeeeeHHhHHHHHHHcC-----------CcCc-EEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCC
Q psy15223 668 DPPLLLILAFNLVKSCLKKFG-----------FKGN-IIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSG 735 (2492)
Q Consensus 668 ~~~~~~i~a~~~~~~~~~~~~-----------~~~~-~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~G 735 (2492)
.++.||+|+++++++.+..+ .+++ ++++++|++|+|++|.|||.......++.+||++++||++++|
T Consensus 252 -~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~G 330 (1159)
T PLN02882 252 -TGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSG 330 (1159)
T ss_pred -CCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCC
Confidence 14799999999999987652 2234 4499999999999998776211111246899999999999999
Q ss_pred CccEEecCCCCHHHHHHHHHcCCCCC--CcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccc
Q psy15223 736 TGIVHSAPAYGIEDFLIFKKQNMKDS--DIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYM 813 (2492)
Q Consensus 736 TG~Vh~aPahg~~D~~~~~~~~l~~~--~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp 813 (2492)
||+||+|||||++||.+|++|||+.+ ++++|||++|+|++++|+|+|+.+++|++.|++.|+++|.|++.+++.|+||
T Consensus 331 TGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp 410 (1159)
T PLN02882 331 TGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYP 410 (1159)
T ss_pred cceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCC
Confidence 99999999999999999999999422 4789999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchh-hHHHHHHHhcCCCeeeeccccCCceeeEE
Q psy15223 814 HCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG-KDRLKSMILNRPDWTISRQRHWGVPIAFF 892 (2492)
Q Consensus 814 ~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~-~~rl~~~l~~~~DWcISRqr~WGvpIP~~ 892 (2492)
||||||+|||||+++||||++++ +|+++++++++++|+|+++ ++|+.+||++++||||||||+||||||+|
T Consensus 411 ~cwR~~tpli~~a~~qWFi~~~~--------~k~~~l~~~~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPvw 482 (1159)
T PLN02882 411 FCWRSDTPLIYRAVPSWFVKVEE--------IKDRLLENNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIW 482 (1159)
T ss_pred EeeCCCCEEEEEecceeEEEcHH--------HHHHHHHhhCCcEEECCcchhhHHHHHHhcCcccceeeccccCCccceE
Confidence 99999999999999999999988 9999999999999999999 58999999999999999999999999999
Q ss_pred EECCCCccccCcHHHHHHHHHHHhhcCCccccccCchhh-cCCC----ccCceecCCccccccccccccchhcccCcc--
Q psy15223 893 IHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEF-LGDD----AVNYKKSNDTLDVWFDSGITHQTVIRGSHK-- 965 (2492)
Q Consensus 893 ~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~~-~~~~----~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~-- 965 (2492)
+|+++++.+ ....++++.+.....+.|.|+. ...++ +++. ...++|++||||||||||++|+++++++.+
T Consensus 483 ~~~~~~~~~--~~~s~~el~~~~~~~~~dlh~~-~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~~ 559 (1159)
T PLN02882 483 ISDDGEEVV--VIGSIAELEKLSGVKVTDLHRH-FIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENK 559 (1159)
T ss_pred EeCCCCeEE--ecCcHHHHHHHhCCchhhcccc-chhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccCh
Confidence 998876543 2345666666666667788875 33333 3321 247999999999999999999999976532
Q ss_pred --ccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHH
Q psy15223 966 --KQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 1043 (2492)
Q Consensus 966 --~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl 1043 (2492)
+...||+|++++|+||+||||+++++.++++++.+||++|++|||++|++|+|||||+||+|+|.+++++||||+|||
T Consensus 560 ~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~ 639 (1159)
T PLN02882 560 ELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRL 639 (1159)
T ss_pred hHhhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHH
Confidence 245799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCc--ccccccCHHHHHHH-HHHHHHHHHHHHHHhhcCCC--------CCCCcccccccccchHHHHHHHHHHHHH
Q psy15223 1044 WVASTDY--SKDLSISNEILNRV-VETYRRIRNTLRFLLANTSD--------FNPNINIIKISDMVEIDKYAIINITNLQ 1112 (2492)
Q Consensus 1044 ~l~s~~~--~~d~~fs~~~l~~~-~~~~~kl~n~~rf~l~~l~~--------~~~~~~~~~~~~~~~~D~~il~~l~~~~ 1112 (2492)
|++++++ .+|++|+.+.+.+. .+.+.++||++||+++++.+ |.|............+|+||++++++++
T Consensus 640 ~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li 719 (1159)
T PLN02882 640 YLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLV 719 (1159)
T ss_pred HHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHH
Confidence 9998765 57899999888765 46899999999999988754 3332100000223678999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Q psy15223 1113 KEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWS 1192 (2492)
Q Consensus 1113 ~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~ 1192 (2492)
+.+.++|++|+|++|++.|++|++ +|||+|++..|+|+|... ++.++++++++|+++|..++++|+|||||+||+||+
T Consensus 720 ~~v~~~me~y~f~~A~~~I~~Fv~-~lsN~YIe~~Kprl~~~~-~~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q 797 (1159)
T PLN02882 720 KFVREEMGAYRLYTVVPYLVKFID-NLTNIYVRFNRKRLKGRT-GEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQ 797 (1159)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH-HHhHHHHHhCCHhhhCCC-ChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Confidence 999999999999999999999995 699999999999999864 456788999999999999999999999999999999
Q ss_pred HccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCchhHH-HH
Q psy15223 1193 IFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFE-IL 1271 (2492)
Q Consensus 1193 ~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~~~~~-~l 1271 (2492)
+|+.. .....+|||++.||+.++.+.+.++++.|+.++++++.++.+.+ |....++.++++.+++..+.+..+ .+
T Consensus 798 ~L~~~--~~~~~~SVh~~~~P~~~~~~~d~~le~~~~~~~~ii~~~r~~r~--~~~~~~~~pl~~~~~~~~~~~~~~~~~ 873 (1159)
T PLN02882 798 NLRKV--LPGSEESIHYCSFPQVDEGELDERIEQSVSRMQTVIELARNIRE--RHNKPLKTPLKEMVVVHPDAEFLDDIT 873 (1159)
T ss_pred Hhccc--cCCCCCceeecCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHH--HcCCCCCCccceeeEecCCHHHHHHHH
Confidence 99751 00124799999999977766677888899999999888876644 555567788887666655544433 33
Q ss_pred HHhHHHHHHhhhccceEEeecCCCCceEEEEEecC
Q psy15223 1272 NEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSI 1306 (2492)
Q Consensus 1272 ~~~~~~L~~l~~vs~v~i~~~~~~~~~~v~v~~~~ 1306 (2492)
..+.+.|.+.++|.+|++.+... .-+.+.+.+..
T Consensus 874 ~~~~~~i~~e~nv~~v~~~~~~~-~~~~~~~~pn~ 907 (1159)
T PLN02882 874 GKLKEYVLEELNVRSLVPCNDPL-KYASLRAEPNF 907 (1159)
T ss_pred HHHHHHHHHhhCcceEEEeeccc-ceEEEEEeeCc
Confidence 67888999999999999865322 22355555533
No 13
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=9.5e-158 Score=1622.19 Aligned_cols=849 Identities=25% Similarity=0.429 Sum_probs=710.8
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc---
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK--- 513 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~--- 513 (2492)
.+|++.. .+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||||||||.+|+|.+|.
T Consensus 89 ~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k 168 (1205)
T PTZ00427 89 DAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKK 168 (1205)
T ss_pred CCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcc
Confidence 3455443 245678899999999999999999999999999999999999999999999999999999999999874
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCC
Q psy15223 514 ----NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 589 (2492)
Q Consensus 514 ----~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~ 589 (2492)
.+++++|+++|++|+.++.+.|+++|+|||+|+||+++|+||||.|++.++|+|.+|+++|||||+.+||+|||.|
T Consensus 169 ~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c 248 (1205)
T PTZ00427 169 EDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKC 248 (1205)
T ss_pred cchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeccCCCC
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccccccc--cccceeccEEEEEeecCCchhh--------------hhhhccC------C------------CCCCCeE
Q psy15223 590 KSALAEAEI--EYKKKYDFSIYVGFSFSEPEKI--------------KSIFNLK------N------------LPSGKGY 635 (2492)
Q Consensus 590 ~taLae~Ev--ey~~~~~~s~yv~f~~~~~~~~--------------~~~~~~~------~------------~~~~~~~ 635 (2492)
+||||++|| +|+|+.+||+||+|++.+.... ...+.+. . ....+.+
T Consensus 249 ~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1205)
T PTZ00427 249 NTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSE 328 (1205)
T ss_pred CCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeeccccccccccccccccccccccCCCCE
Confidence 999999999 8999999999999999752100 0000000 0 0012479
Q ss_pred EEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCC--cCc-EEEEEecccccCCEEecCCc
Q psy15223 636 IVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF--KGN-IIGICKGIKLSKINFFHPLS 712 (2492)
Q Consensus 636 ~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~--~~~-~~~~~~G~~l~g~~~~~P~~ 712 (2492)
++||||||||||||+||||||+++|+.++... .++.||+|+++++.++++.++ ++. ++.+++|++|+|++|.||+.
T Consensus 329 lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~-~~~~~i~a~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~ 407 (1205)
T PTZ00427 329 ILAWTTTPWTLPSNLALCVNEHFTYLRIHHVK-SNRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFT 407 (1205)
T ss_pred EEEEECCchhhhhceEEEECCCCeEEEEEecC-CCeEEEEehHHHHHHHHhhcccccccEEEEEeechhhCCCeeeCCcc
Confidence 99999999999999999999999999998622 247899999999999988865 333 44999999999999998873
Q ss_pred ccc---cCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCC--CC-CcccccCCCCcccccCCCCCCcchh
Q psy15223 713 NID---INYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMK--DS-DIINPVMDDGNFISTLPLFGGMSIW 786 (2492)
Q Consensus 713 ~~~---~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~--~~-~~~~~vd~~G~~~~~~~~~~G~~v~ 786 (2492)
... +..++.+|||+++||++++|||+||+|||||++||.+|++|||+ .. ++++|||++|+|++++|+|+|+.++
T Consensus 408 ~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ 487 (1205)
T PTZ00427 408 NFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIK 487 (1205)
T ss_pred ccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCcccCCCCHH
Confidence 111 11267899999999999999999999999999999999999993 11 3689999999999999999999999
Q ss_pred hchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchh-hH
Q psy15223 787 KASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG-KD 865 (2492)
Q Consensus 787 ~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~-~~ 865 (2492)
+|++.|++.|+++|.|++.+++.|+||||||||+||||++++||||++++ +++++++++++++|+|++. ++
T Consensus 488 dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~--------~k~~~l~~~~~i~w~P~~~~~~ 559 (1205)
T PTZ00427 488 EADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSN--------STNELVKNNETTYWIPAHIKEK 559 (1205)
T ss_pred HhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcH--------HHHHHHHcCCccEEeCchhhHh
Confidence 99999999999999999999999999999999999999999999999998 9999999999999999998 69
Q ss_pred HHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCC-cccccc-Cchhhc-CCC--ccCce
Q psy15223 866 RLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGI-EIWQNL-DIKEFL-GDD--AVNYK 940 (2492)
Q Consensus 866 rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~-~~w~~~-~~~~~~-~~~--~~~~~ 940 (2492)
|+.+||++++||||||||+||||||+|+|++||... ..+.++++.+.....+. +.|... +...+. +++ +..++
T Consensus 560 r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~~~~~~--~i~s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~ 637 (1205)
T PTZ00427 560 KFHNWIKDAKDWCISRNRYWGTPIPIWADEKMETVI--CVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLK 637 (1205)
T ss_pred HHHHHHhcCccceeeeccccCccceeEEcCCCCeEe--ccCCHHHHHHHhccccchhhcccccChhhccCCcccccccee
Confidence 999999999999999999999999999999888654 22334444433322222 344331 222222 211 23699
Q ss_pred ecCCccccccccccccchhcccCc-----cccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCC
Q psy15223 941 KSNDTLDVWFDSGITHQTVIRGSH-----KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSK 1015 (2492)
Q Consensus 941 ~~~dvlDvWfdSg~~~~~~~~~~~-----~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~ 1015 (2492)
+++||||||||||++|++.++++. +++.+||+|++++|.||+||||+++++.++++++++||++|++|||++|++
T Consensus 638 r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~d 717 (1205)
T PTZ00427 638 RIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASD 717 (1205)
T ss_pred ecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCC
Confidence 999999999999999999887532 235789999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCccCcchhhhhcChhhHHHHhhcc-Cc-ccccccCHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCC-----
Q psy15223 1016 GKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DY-SKDLSISNEILNR-VVETYRRIRNTLRFLLANTSDFNP----- 1087 (2492)
Q Consensus 1016 G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~-~~d~~fs~~~l~~-~~~~~~kl~n~~rf~l~~l~~~~~----- 1087 (2492)
|+|||||+||+|+|.++|++||||+||||+++. .. .+|++|+++.+.+ ..+.+.++||++||+++++.++..
T Consensus 718 G~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~ 797 (1205)
T PTZ00427 718 GKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQ 797 (1205)
T ss_pred CCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 999999999999999999999999999999974 54 6899999998864 567788999999999988764321
Q ss_pred ---CcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHH
Q psy15223 1088 ---NINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSA 1164 (2492)
Q Consensus 1088 ---~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa 1164 (2492)
..... ......+|+||+++++++++.++++|++|+|++|++.|++|++ +||+||++++|+|+|++.. ...+.++
T Consensus 798 f~~~~~~~-~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~-~lsnwYIe~~K~rl~~~~~-~~~~~~a 874 (1205)
T PTZ00427 798 FLFNTDYI-YKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIE-NLTNWYIRLNRDRMRGSLG-EENCLQS 874 (1205)
T ss_pred CCcCcccc-cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HhccHHHHHcchhhccCCC-cHHHHHH
Confidence 11000 1235678999999999999999999999999999999999995 6999999999999998633 3456789
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCc-c------------------ccCCCceeeccCCCCcccC-CchHH
Q psy15223 1165 QTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNF-Y------------------IESGETIFTQLHYKLPKVY-NSKKL 1224 (2492)
Q Consensus 1165 ~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~-~------------------~~~~~SV~~~~wp~~~~~~-~~~~~ 1224 (2492)
+++|+++|+.++++|||||||+|||+|+.|+.... . ....+|||++.||+.++.. .+.++
T Consensus 875 ~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~~~d~~~ 954 (1205)
T PTZ00427 875 LCTTYRTLHLFTVLMAPFTPFITEYIYQQLRRVKSTNEHNENNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKYIIDYEI 954 (1205)
T ss_pred HHHHHHHHHHHHHHccccchHHHHHHHHHhhhccccccccccccccccccccccccCCCCeeEeeCCCCCcchhccCHHH
Confidence 99999999999999999999999999999964100 0 0013699999999976554 46677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcce-EEEEEe-CchhHHHHHHhHHHHHHhhhccceEEeecCCCCceEEEE
Q psy15223 1225 LYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQA-EIILKI-NKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIII 1302 (2492)
Q Consensus 1225 ~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a-~v~i~~-~~~~~~~l~~~~~~L~~l~~vs~v~i~~~~~~~~~~v~v 1302 (2492)
++.++.++++ ...++.+|...+++..... .++|.. ++...+.++.+.+.|.+.++|.+|++..... .+.+.+
T Consensus 955 e~~~~~~~~i----i~~~R~~R~~~~i~~r~pl~~~~v~~~~~~~~~~~~~~~~~i~~e~nv~~v~~~~~~~--~~~~~~ 1028 (1205)
T PTZ00427 955 IELIEKMKDV----ILLGRVLRERRKVASKKPLKSITILHPNESYFKNFDQISNYIKEELNVLNVECSNDTS--CLDFSA 1028 (1205)
T ss_pred HHHHHHHHHH----HHHHHHHHHHcCCCCCCccceeEEecCcHHHHHHHHHHHHHHHHhhCcceEEEEecCc--eEEEEE
Confidence 7777777754 4455678888877755443 344533 3445566788888999999999999875432 245555
Q ss_pred EecC
Q psy15223 1303 KPSI 1306 (2492)
Q Consensus 1303 ~~~~ 1306 (2492)
.+..
T Consensus 1029 ~pn~ 1032 (1205)
T PTZ00427 1029 IPNY 1032 (1205)
T ss_pred Eech
Confidence 5533
No 14
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.2e-157 Score=1633.27 Aligned_cols=841 Identities=25% Similarity=0.425 Sum_probs=727.3
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
.++++++|++|+++|+++++|++..+.+.++++|+|++|||||||.|||||++|++++||++||+||+||+|+|+|||||
T Consensus 7 ~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~ 86 (1159)
T PLN02882 7 DFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDC 86 (1159)
T ss_pred CCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCC
Confidence 46889999999999999999998765566788999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHH
Q psy15223 1649 HGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIF 1721 (2492)
Q Consensus 1649 hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~ 1721 (2492)
||||||.+++|.+|. ++++++|+++|++|+.++++.|+++|+|||+|+||+++|.||||.|++.++|+|.+|+
T Consensus 87 hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~ 166 (1159)
T PLN02882 87 HGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLF 166 (1159)
T ss_pred CCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHH
Confidence 999999999999885 3789999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEeCcccccCCCCCcccccccc--cceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccc
Q psy15223 1722 KKGYVYHGLKPVNWCFDCKSALAEAEI--EYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPAN 1799 (2492)
Q Consensus 1722 ~kGliyr~~~~v~wcp~~~t~Lad~Ev--ey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~ 1799 (2492)
++|||||+.+||+|||.|+|+||++|+ +|++..++++||+|++.+.. .+.+++||||||||||||
T Consensus 167 ~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~-------------~~~~l~iwTTtPwTLpsn 233 (1159)
T PLN02882 167 EKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDP-------------DNASFVAWTTTPWTLPSN 233 (1159)
T ss_pred HCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCC-------------CCcEEEEEeCCccccccC
Confidence 999999999999999999999998777 79999999999999986421 236999999999999999
Q ss_pred cEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC-----------CcCceE-EEEecccccccEEeCCCCccccC
Q psy15223 1800 QALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG-----------FKGNII-GICKGIKLSKINFFHPLSNIDIN 1867 (2492)
Q Consensus 1800 ~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~-----------~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~ 1867 (2492)
+||||||+++|++++...+ ++.||+|+++++++.+..+ .+.+++ ++++|++|+|++|.+||..+...
T Consensus 234 ~Al~VnP~~~Y~~v~~~~~-~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~ 312 (1159)
T PLN02882 234 LALCVNPNFTYVKVRNKYT-GKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEF 312 (1159)
T ss_pred eEEEECCCCcEEEEEecCC-CeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccc
Confidence 9999999999999986422 3789999999999886642 233555 99999999999998776322111
Q ss_pred CCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCC--CcccccCCCCccccCCCCCCCccHHhhhHHHHHH
Q psy15223 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDS--DIINPVMDDGNFISTLPLFGGMSIWKASKLICSY 1945 (2492)
Q Consensus 1868 ~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~--~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~ 1945 (2492)
.++.+||++++||++++|||+||+|||||++||++|++|||+.+ +++++||++|+|+++++.|+|+.|++|++.|++.
T Consensus 313 ~~~~~~Vi~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~ 392 (1159)
T PLN02882 313 SDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAA 392 (1159)
T ss_pred cCceEEEEccCccCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHH
Confidence 24689999999999999999999999999999999999999432 5899999999999999999999999999999999
Q ss_pred HHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccc-hhHHHHhhhCC
Q psy15223 1946 LKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG-KDRLKSMILNR 2024 (2492)
Q Consensus 1946 L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~-~~~~~~~l~~~ 2024 (2492)
|+++|.|++.+++.|+||||||||+|+|+++++||||++++ +|+++++++++++|+|++. ++||.+||+++
T Consensus 393 Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~--------~k~~~l~~~~~i~w~P~~~~~~r~~~wl~~~ 464 (1159)
T PLN02882 393 IKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEE--------IKDRLLENNKQTYWVPDYVKEKRFHNWLENA 464 (1159)
T ss_pred HHHCCCccceeeeecCCCEeeCCCCEEEEEecceeEEEcHH--------HHHHHHHhhCCcEEECCcchhhHHHHHHhcC
Confidence 99999999999999999999999999999999999999988 9999999999999999999 58999999999
Q ss_pred CCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhh-cCCC----ccCceecccccccc
Q psy15223 2025 PDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEF-LGDD----AVNYKKSNDTLDVW 2099 (2492)
Q Consensus 2025 ~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~-~~~~----~~~~~~~~dvlDvW 2099 (2492)
+||||||||+||||||+|+|++++.... ...++++.+.....+.|.|+. ..+++ +|+. ...++|++||||||
T Consensus 465 ~DW~ISRqR~WGtPIPvw~~~~~~~~~~--~~s~~el~~~~~~~~~dlh~~-~id~i~~p~~~~~~~~~~~r~~dVlD~W 541 (1159)
T PLN02882 465 RDWAVSRSRFWGTPLPIWISDDGEEVVV--IGSIAELEKLSGVKVTDLHRH-FIDHITIPSSRGPEFGVLRRVDDVFDCW 541 (1159)
T ss_pred cccceeeccccCCccceEEeCCCCeEEe--cCcHHHHHHHhCCchhhcccc-chhhhccccccCCchhceEecCceeeee
Confidence 9999999999999999999988765321 223444555444456677765 33333 3321 23699999999999
Q ss_pred cccCcchhhhccCCc----cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCC
Q psy15223 2100 FDSGITHQTVIRGSH----KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGN 2175 (2492)
Q Consensus 2100 fdSg~~~~~~~~~~~----~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN 2175 (2492)
||||++|++++..+. .++..||+|++++|+||+||||+++++.++++++.+||++|++|||++|++|+|||||+||
T Consensus 542 FdSg~~p~a~~~~p~e~~~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGN 621 (1159)
T PLN02882 542 FESGSMPYAYIHYPFENKELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKN 621 (1159)
T ss_pred eccCccHHHHcCCcccChhHhhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCC
Confidence 999999999986542 2244699999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhccChhHHHHHHhccCC--CCcccccHHHHHHH-HHHHHHHHHHHHHHHhcCCC--------CCCCcccccc
Q psy15223 2176 IIKPQKLCNLFGAEILRLWVASTDY--SKDLSISNEILNRV-VETYRRIRNTLRFLLANTSD--------FNPNINIIKI 2244 (2492)
Q Consensus 2176 vi~p~~ii~~yGaD~lR~~l~s~~~--~~d~~fs~~~l~~~-~~~~~kl~n~~r~~~~~~~~--------~~~~~~~~~~ 2244 (2492)
+|+|.+++++||||+|||||+++++ .+|++|+++.+.+. .+.++++||+++|+++++.+ |.|.......
T Consensus 622 vIdP~evi~~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~ 701 (1159)
T PLN02882 622 YPDPNEVIDKYGADALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQ 701 (1159)
T ss_pred CCCHHHHHHHhCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCcccccccc
Confidence 9999999999999999999998764 58899999988765 56899999999999887644 3332100000
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHH
Q psy15223 2245 SDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQS 2324 (2492)
Q Consensus 2245 ~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~ 2324 (2492)
.....+|+||+++++++++.++++|++|+|++|++.+++|++ ++||+||+.+|+|+|... ++.++++++++|+++++.
T Consensus 702 ~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~I~~Fv~-~lsN~YIe~~Kprl~~~~-~~~~~~~al~tL~~vL~~ 779 (1159)
T PLN02882 702 NSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKFID-NLTNIYVRFNRKRLKGRT-GEEDCRTALSTLYNVLLT 779 (1159)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHhHHHHHhCCHhhhCCC-ChHHHHHHHHHHHHHHHH
Confidence 123678999999999999999999999999999999999995 699999999999999864 446788999999999999
Q ss_pred HHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC
Q psy15223 2325 LLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGI--IG 2402 (2492)
Q Consensus 2325 l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~--i~ 2402 (2492)
++++|+|||||+||+||+.|++.. ....+|||++.||+.++.+.+++++..|+.+++++.. ++++|.+.+ ++
T Consensus 780 l~~LLaPfmPf~aEeI~q~L~~~~--~~~~~SVh~~~~P~~~~~~~d~~le~~~~~~~~ii~~----~r~~r~~~~~~~~ 853 (1159)
T PLN02882 780 SCKVMAPFTPFFTEVLYQNLRKVL--PGSEESIHYCSFPQVDEGELDERIEQSVSRMQTVIEL----ARNIRERHNKPLK 853 (1159)
T ss_pred HHHHhhchhhHHHHHHHHHhcccc--CCCCCceeecCCCCcchhhcchhHHHHHHHHHHHHHH----HHHHHHHcCCCCC
Confidence 999999999999999999997520 1134799999999988777788888888888765554 455555554 55
Q ss_pred CCceeEEEEEeChhhH-HHHHHhHHHHHHhhhcccEEEeec
Q psy15223 2403 SSLQAEIILKINKLDF-EILNEFGEELKFFLLTSSVSLFQI 2442 (2492)
Q Consensus 2403 ~~~~~~v~i~~~~~~~-~~l~~~~~~L~~l~~vs~v~i~~~ 2442 (2492)
.+++..+++..+.+.. +.++.+.+.|.+.++|.+|++...
T Consensus 854 ~pl~~~~~~~~~~~~~~~~~~~~~~~i~~e~nv~~v~~~~~ 894 (1159)
T PLN02882 854 TPLKEMVVVHPDAEFLDDITGKLKEYVLEELNVRSLVPCND 894 (1159)
T ss_pred CccceeeEecCCHHHHHHHHHHHHHHHHHhhCcceEEEeec
Confidence 5555555554444333 333678889999999999998754
No 15
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-157 Score=1518.72 Aligned_cols=768 Identities=27% Similarity=0.483 Sum_probs=698.0
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
.++..++|++|++.|++++.|+... +...++|+|..||||++|.||||||+++|+.|+++||+||+||+|+|+|||||
T Consensus 4 ~ydp~~iE~k~~~~W~~~~~f~~~~--~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~Dh 81 (877)
T COG0525 4 TYDPKEIEEKWYKKWEESGYFKPDP--NEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDH 81 (877)
T ss_pred CCChhhhhHHHHHHHHhcCCccCCC--CCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCC
Confidence 3678899999999999999998742 22215699999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHh---cc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHh
Q psy15223 1649 HGMPIEIQIEKLY---GK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFK 1722 (2492)
Q Consensus 1649 hGlPie~~a~k~~---~~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~ 1722 (2492)
+|+|+|.++||++ |+ ++++++|+++|++|.+++.+.+++|++|||+|+||+++|+||||.+.+.|+.+|.+||+
T Consensus 82 AGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~ 161 (877)
T COG0525 82 AGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYE 161 (877)
T ss_pred CCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999998 54 78899999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEE
Q psy15223 1723 KGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQAL 1802 (2492)
Q Consensus 1723 kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai 1802 (2492)
+|||||+.++|||||.|+|||||.||+|++..+..+|++|++.+. +.+|+|||||||||+|++||
T Consensus 162 ~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~---------------~~~i~VATTRPEtmlgdtAV 226 (877)
T COG0525 162 KGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADG---------------DGYLVVATTRPETLLGDTAV 226 (877)
T ss_pred CCceeecCCcccCCCccccchhhhhhccceeeeeEEEEEEecCCC---------------CceEEEEecCccccccceEE
Confidence 999999999999999999999999999999999999999998753 35999999999999999999
Q ss_pred EEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCcccc
Q psy15223 1803 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITV 1882 (2492)
Q Consensus 1803 ~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~ 1882 (2492)
+|||++ +||+ +|+|+.+++|+. ++++||+.++||++
T Consensus 227 aVhP~D--------------------------eRYk------------~LvGk~v~lPl~------~r~IpIiaD~~VD~ 262 (877)
T COG0525 227 AVHPDD--------------------------ERYK------------HLVGKEVILPLV------GREIPIIADEYVDP 262 (877)
T ss_pred EECCCC--------------------------hhhH------------hhcCCEEecCCC------CCeeeeecCcccCC
Confidence 999995 3565 799999999999 99999999999999
Q ss_pred CCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCC-CCCCccHHhhhHHHHHHHHhcCCcceeeeeccc
Q psy15223 1883 DSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLP-LFGGMSIWKASKLICSYLKKSKTLFNIEMFEHS 1961 (2492)
Q Consensus 1883 ~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~-~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~ 1961 (2492)
++|||+|+++||||++||+++++|+| |+++.+|++|+++++++ +|+||++++||++|++.|++.|+|++.+++.|+
T Consensus 263 eFGTG~VkItpahD~nD~e~~krh~L---p~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~ 339 (877)
T COG0525 263 EFGTGAVKITPAHDFNDYEVGKRHNL---PLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHS 339 (877)
T ss_pred cCCCceEEecCCCCchhhhhhhcCCC---CceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeecccc
Confidence 99999999999999999999999999 99999999999998885 999999999999999999999999999999999
Q ss_pred cccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhh--cceEecccchhHHHHhhhCCCCcccccccCCCcee
Q psy15223 1962 YMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPI 2039 (2492)
Q Consensus 1962 ~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~--~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pI 2039 (2492)
+|||||||+||++++++|||+++.. +++.++++.+ +++|+|+..++++.+|+++++||||||||||||||
T Consensus 340 V~~~~R~g~~IEp~ls~QWfVk~~~--------la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~I 411 (877)
T COG0525 340 VGHCERCGTPIEPLLSKQWFVKVLE--------LAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRI 411 (877)
T ss_pred CccccCCCceeeeeecceeeEEhHh--------hHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCccc
Confidence 9999999999999999999999988 9999999999 99999999999999999999999999999999999
Q ss_pred eEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCCCccCceecccccccccccCcchhhhccCCccc---
Q psy15223 2040 AFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK--- 2116 (2492)
Q Consensus 2040 P~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~--- 2116 (2492)
|+|||++||.+.+.... .+ +.+- ... +....+.+++||||||||||++|++++++..+.
T Consensus 412 PvWy~~~~g~v~v~~~~-~~-----------~~~~----~~~--~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l 473 (877)
T COG0525 412 PVWYCKECGNVVVAEEE-PE-----------DPAA----AEK--CPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDL 473 (877)
T ss_pred ceEEecCCCcEEeCCcc-cc-----------chhh----hcc--CchhcccCCcchhhhhhhcccccccccCCCCcchHH
Confidence 99999998887543221 00 0000 000 011467899999999999999999999876532
Q ss_pred cCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHh
Q psy15223 2117 QLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2117 ~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
+..||.|+.++|.||+|+|..+|++.+..+.++.||+.|++||+|+|++|+|||||+||||||.++|++||+|+||||++
T Consensus 474 ~~fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la 553 (877)
T COG0525 474 KKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLA 553 (877)
T ss_pred HhcCCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHH
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHH
Q psy15223 2197 ST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFH 2275 (2492)
Q Consensus 2197 s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~ 2275 (2492)
+. ..++|++|+++.++...++.+||||+.||+++++.+..+.... ....+.+|+||+++|+++++.++++|++|+|.
T Consensus 554 ~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~--~~~~~~~drWIls~l~~~v~~v~~~ld~y~f~ 631 (877)
T COG0525 554 SLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLD--LLALSLADRWILSRLNETVKEVTEALDNYRFD 631 (877)
T ss_pred hccCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCccccc--ccccchHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 74 7899999999999999999999999999999988665543211 13336899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCC
Q psy15223 2276 MIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGE 2355 (2492)
Q Consensus 2276 ~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~ 2355 (2492)
.|.++|++|+|++||+||+|++|.++|.. ...+.+++.+|+++|+.+++||||||||+||||||.++.. +
T Consensus 632 ~a~~~ly~F~W~~fcD~YlEl~K~~l~~~---~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~-------~ 701 (877)
T COG0525 632 EAARALYEFIWNDFCDWYLELAKPRLYGG---EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT-------E 701 (877)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhcCc---HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC-------C
Confidence 99999999999999999999999999986 5566799999999999999999999999999999999763 6
Q ss_pred CeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeChhhHHHHHHhHHHHHHhhhcc
Q psy15223 2356 TIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTS 2435 (2492)
Q Consensus 2356 sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~~~~~~l~~~~~~L~~l~~vs 2435 (2492)
||+.+.||+..+...++..+..++.+. +++.++|++|+++++..+....+.+...++..+.++.....|..+++++
T Consensus 702 si~~~~~P~~~~~~~d~~a~~~~~~l~----~ii~~iR~~r~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 777 (877)
T COG0525 702 SIHLASWPEVDEELIDEEAEKEFELLK----EIISAIRNLRAEMNLSPSAPLKVVLVGSEELEDRLEANEDDIKGLANLE 777 (877)
T ss_pred eEEeccCCCcchhhccHHHHHHHHHHH----HHHHHHHHHHHHcCCCCCCceeEEEeccHhHHHHHHHHHHHHHHhcCcc
Confidence 999999999887777776766666654 5788899999999999988877766554555677787888999999999
Q ss_pred cEEEeec
Q psy15223 2436 SVSLFQI 2442 (2492)
Q Consensus 2436 ~v~i~~~ 2442 (2492)
++++...
T Consensus 778 ~i~~~~~ 784 (877)
T COG0525 778 ELEILSP 784 (877)
T ss_pred eeeeccc
Confidence 9998863
No 16
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-155 Score=1615.37 Aligned_cols=821 Identities=29% Similarity=0.517 Sum_probs=722.9
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
-+++++++|++||++|+++++|++..+.+.++++|+|++|||||||.|||||++|+|++|+++||+||+||+|+|+||||
T Consensus 9 ~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD 88 (975)
T PRK06039 9 SQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWD 88 (975)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcC
Confidence 35788999999999999999999765545678999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHH
Q psy15223 1648 CHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGII 1720 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L 1720 (2492)
|||||||.+|+|.+|. ++++++|+++|++|+.++++.|++||+|||+|+||+|+|.||||.|+++++|+|.+|
T Consensus 89 ~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l 168 (975)
T PRK06039 89 THGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQL 168 (975)
T ss_pred CCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHH
Confidence 9999999999998774 478999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceEEeCcccccCCCCCccccccccc--ceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhcc
Q psy15223 1721 FKKGYVYHGLKPVNWCFDCKSALAEAEIE--YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPA 1798 (2492)
Q Consensus 1721 ~~kGliyr~~~~v~wcp~~~t~Lad~Eve--y~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~ 1798 (2492)
+++|||||+.+||+|||.|+|+|||+||+ |++..++++||+|++.+. .+.+++|||||||||||
T Consensus 169 ~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~--------------~~~~l~i~TTrP~Tl~~ 234 (975)
T PRK06039 169 YDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGE--------------ENEYLLAWTTTPWTLPS 234 (975)
T ss_pred HHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCceEEEEEEecCC--------------CCCEEEEEECCcccccc
Confidence 99999999999999999999999999999 999999999999998531 24699999999999999
Q ss_pred ccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceE-EEEecccccccEEeCCCCccccCCCceecEEec
Q psy15223 1799 NQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNIDINYNRLSPIYLG 1877 (2492)
Q Consensus 1799 ~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~ 1877 (2492)
|+||||||+++|++++.++ +.||+|+++++++++ +.+.+ .+++|++|+|++|.|||..+.. ..+.+||+++
T Consensus 235 n~avaV~P~~~Y~~~~~~~---~~yi~a~~~~~~~~~----~~~~~~~~~~G~~L~G~~~~~P~~~~~~-~~~~~pii~~ 306 (975)
T PRK06039 235 NLALAVHPDIDYVKVEGGG---EVYILAEALLEKVLK----EDYEVVETFKGSELEGLEYEPPFPYFAD-EKNAFRVVLA 306 (975)
T ss_pred ceEEEECCCCceEEEecCC---eEEEEhHHHHHHHhh----cccEEEeeecCccccCCEEECCcccccC-CcceeEEEec
Confidence 9999999999999998653 789999999999876 23444 9999999999999999962211 0157999999
Q ss_pred CccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeee
Q psy15223 1878 DYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEM 1957 (2492)
Q Consensus 1878 ~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~ 1957 (2492)
+||++++|||+||+|||||++||+++++||| ++++++|++|+|++++|+|+|+++++|++.|++.|+++|.|++.++
T Consensus 307 ~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l---~~~~~id~~G~~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~ 383 (975)
T PRK06039 307 DFVTTEDGTGIVHIAPAFGEDDFEVGKKYGL---PVVCPVDDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAET 383 (975)
T ss_pred CccCCCCCccceeeCCCCChHHHHHHHHcCC---CccceeCCCceEcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeee
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred eccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchh-HHHHhhhCCCCcccccccCCC
Q psy15223 1958 FEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKD-RLKSMILNRPDWTISRQRHWG 2036 (2492)
Q Consensus 1958 ~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~-~~~~~l~~~~DW~ISRqr~WG 2036 (2492)
++|+||||||||+||++++++||||++++ +++++++++++++|+|++.++ ++.+||++++||||||||+||
T Consensus 384 ~~h~~p~c~R~g~pv~~~~~~qWFi~~~~--------~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG 455 (975)
T PRK06039 384 YEHSYPHCWRCDTPLIYYATESWFIRVTK--------IKDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWG 455 (975)
T ss_pred ecCCCCEeCCCCCEEEEEecCeeeEecHH--------HHHHHHHhhCCeEEECcccchhhHHHHHhcCccceeeeccccC
Confidence 99999999999999999999999999998 999999999999999999999 999999999999999999999
Q ss_pred ceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCc--------ccccccchhhhcCCCccCceecccccccccccCcchhh
Q psy15223 2037 VPIAFFIHKKSGKLHPKTLELIELIAKKIELNGI--------EIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQT 2108 (2492)
Q Consensus 2037 ~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~--------~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~ 2108 (2492)
||||+|+|++|+...+ +.++.++.+..|. ..|++... --+| .+..+.|++||||||||||++|++
T Consensus 456 ~PIPiw~~~~~g~~~v-----~~~~~el~~~~g~~~~~~~l~~~~~d~~~-~~~~-~~~~~~r~~dVlDvWFdSg~~p~a 528 (975)
T PRK06039 456 TPLPIWRCEDCGRIDV-----IGSIEELEELFGEDVEPIDLHRPYVDEVT-LPCP-DGGTMRRVPDVIDVWFDSGSMPYA 528 (975)
T ss_pred CcceEEEecCCCeEEE-----eccHHHHHHHhCCCcchhhhccccccccc-ccCC-CCcceEeccccccceeecCCccHH
Confidence 9999999999875421 1223333333332 13332110 0012 245799999999999999999999
Q ss_pred hccCC----ccccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhh
Q psy15223 2109 VIRGS----HKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN 2184 (2492)
Q Consensus 2109 ~~~~~----~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~ 2184 (2492)
.+... ..++.+||+|++++|+||+||||+++++.+.++++..||+++++||+|+|.+|+|||||+||+|+|.++++
T Consensus 529 ~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~ 608 (975)
T PRK06039 529 QLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFD 608 (975)
T ss_pred HhCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHH
Confidence 88642 22467899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHhccC-CCCcccccHHH-HHHHHHHHHHHHHHHHHHH--hcCCCCCCCcccccccccchHHHHHHHHHHH
Q psy15223 2185 LFGAEILRLWVASTD-YSKDLSISNEI-LNRVVETYRRIRNTLRFLL--ANTSDFNPNINIIKISDMVEIDKYAIINITN 2260 (2492)
Q Consensus 2185 ~yGaD~lR~~l~s~~-~~~d~~fs~~~-l~~~~~~~~kl~n~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~ 2260 (2492)
+||+|++|||+++.. .++|++|+++. ++.+.+.+++|||+++|+. .++.+|.+.........+..+|+|+++++++
T Consensus 609 ~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~ 688 (975)
T PRK06039 609 KYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNS 688 (975)
T ss_pred HhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHH
Confidence 999999999999754 68999999999 7777888999999999975 4454543321112223457899999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q psy15223 2261 LQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEA 2340 (2492)
Q Consensus 2261 ~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEel 2340 (2492)
+++.++++|++|+|+.|++.+++|+ ++||+||++.+|+|+|.... +.++++++++|+++++.++++|+|||||+||||
T Consensus 689 li~~v~~a~e~y~~~~A~~~l~~f~-~~lsn~Yi~~~k~r~w~~~~-~~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei 766 (975)
T PRK06039 689 LVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRRSRRRFWKEED-DPDKLAAYATLYTVLETLSRLAAPFTPFIAEEI 766 (975)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH-HHHHHHHHHHhhhhhccCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999999999999 89999999999999998643 345778999999999999999999999999999
Q ss_pred HHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeE-EEEEeChhhHH
Q psy15223 2341 WSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAE-IILKINKLDFE 2419 (2492)
Q Consensus 2341 w~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~-v~i~~~~~~~~ 2419 (2492)
|+.|+.. ...+|||++.||+.++.+.|+++++.|+.++ ++...+|++|++.+|+.+.+.. ++|..+.+..+
T Consensus 767 ~~~L~~~----~~~~sv~~~~~P~~~~~~~d~~le~~~~~~~----~ii~~~r~~r~~~~i~~~~pl~~~~v~~~~~~~~ 838 (975)
T PRK06039 767 YQNLTRE----DAPESVHLADWPEVDESLIDEELEEAMDLVR----EIVSLGRSARKKAGIKVRQPLSKITVAEDEEVAE 838 (975)
T ss_pred HHhcccc----CCCCeeEecCCCCCccccCCHHHHHHHHHHH----HHHHHHHHHHHHcCCCCCCccceEEEecCHHHHH
Confidence 9999752 1246999999999888777888877777665 4778889999999988877654 44444433556
Q ss_pred HHHHhHHHHHHhhhcccEE
Q psy15223 2420 ILNEFGEELKFFLLTSSVS 2438 (2492)
Q Consensus 2420 ~l~~~~~~L~~l~~vs~v~ 2438 (2492)
.++.+.+.|+++++|.+|.
T Consensus 839 ~~~~~~~~i~~~~nv~~v~ 857 (975)
T PRK06039 839 ALERYEDLIKDELNVKEVP 857 (975)
T ss_pred HHHHHHHHHHHHhCcccch
Confidence 6788888999999998883
No 17
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.2e-154 Score=1597.73 Aligned_cols=801 Identities=29% Similarity=0.520 Sum_probs=700.8
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc---
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK--- 513 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~--- 513 (2492)
.+|+... .++++++|++++|||||||.||||||+|+|++|+++||+||+||+|+|+|||||||||||.+|+|.+|.
T Consensus 28 ~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~ 107 (975)
T PRK06039 28 DIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGK 107 (975)
T ss_pred CCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccc
Confidence 3454433 346789999999999999999999999999999999999999999999999999999999999998774
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCC
Q psy15223 514 ----NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 589 (2492)
Q Consensus 514 ----~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~ 589 (2492)
.+++++|+++|++|+.++++.|++||+|||+|+||+|+|.||||.|+++++|+|.+|+++|||||+.+||+|||.|
T Consensus 108 ~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~ 187 (975)
T PRK06039 108 KDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRC 187 (975)
T ss_pred cchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccccc--ccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecC
Q psy15223 590 KSALAEAEIE--YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKN 667 (2492)
Q Consensus 590 ~taLae~Eve--y~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~ 667 (2492)
+|+||++||+ |+++.++++||+|++.+. .+.+++||||||||||||+||||||+++|++++.++
T Consensus 188 ~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~--------------~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~ 253 (975)
T PRK06039 188 ETPLSNHEVAQGYKDVKDPSVYVKFKLKGE--------------ENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGG 253 (975)
T ss_pred CCCccHHHHhhcccccCCceEEEEEEecCC--------------CCCEEEEEECCccccccceEEEECCCCceEEEecCC
Confidence 9999999999 999999999999998531 246999999999999999999999999999999655
Q ss_pred CCCceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCH
Q psy15223 668 DPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGI 747 (2492)
Q Consensus 668 ~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~ 747 (2492)
+.||+|+++++++.+ ....++.+++|++|+|++|.|||..... ..+.+||++++||++++|||+||+|||||+
T Consensus 254 ---~~yi~a~~~~~~~~~---~~~~~~~~~~G~~L~G~~~~~P~~~~~~-~~~~~pii~~~~V~~~~GTG~V~~aPahg~ 326 (975)
T PRK06039 254 ---EVYILAEALLEKVLK---EDYEVVETFKGSELEGLEYEPPFPYFAD-EKNAFRVVLADFVTTEDGTGIVHIAPAFGE 326 (975)
T ss_pred ---eEEEEhHHHHHHHhh---cccEEEeeecCccccCCEEECCcccccC-CcceeEEEecCccCCCCCccceeeCCCCCh
Confidence 789999999999876 1233459999999999999999962111 015799999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeec
Q psy15223 748 EDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTT 827 (2492)
Q Consensus 748 ~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t 827 (2492)
+||++|++||| ++++|||++|+|++++|+|+|+++++|++.|++.|++.|.|++.+++.|+||||||||+||+++++
T Consensus 327 ~D~~~~~~~~l---~~~~~id~~G~~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~ 403 (975)
T PRK06039 327 DDFEVGKKYGL---PVVCPVDDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYAT 403 (975)
T ss_pred HHHHHHHHcCC---CccceeCCCceEcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEec
Confidence 99999999999 888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhH-HHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHH
Q psy15223 828 LQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKD-RLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLE 906 (2492)
Q Consensus 828 ~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~-rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~ 906 (2492)
+||||++++ +|+++++++++++|+|++.++ ++.+||++++||||||||+||||||+|+|++||+..
T Consensus 404 ~qWFi~~~~--------~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~~g~~~----- 470 (975)
T PRK06039 404 ESWFIRVTK--------IKDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCEDCGRID----- 470 (975)
T ss_pred CeeeEecHH--------HHHHHHHhhCCeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecCCCeEE-----
Confidence 999999998 999999999999999999999 999999999999999999999999999999998653
Q ss_pred HHHHHHHHHhhcCCc--------cccccCchhhcCCCccCceecCCccccccccccccchhcccCc----cccCCcCeee
Q psy15223 907 LIELIAKKIELNGIE--------IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLIFPADL 974 (2492)
Q Consensus 907 ~i~~~~~~~~~~g~~--------~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~----~~~~~~p~Dl 974 (2492)
++.++.++.+..|.+ .|++... --++ .+..+.|++||||||||||++|++.++++. .++.+||+|+
T Consensus 471 v~~~~~el~~~~g~~~~~~~l~~~~~d~~~-~~~~-~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad~ 548 (975)
T PRK06039 471 VIGSIEELEELFGEDVEPIDLHRPYVDEVT-LPCP-DGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADF 548 (975)
T ss_pred EeccHHHHHHHhCCCcchhhhccccccccc-ccCC-CCcceEeccccccceeecCCccHHHhCCcccChhhhhccCCceE
Confidence 122334444444431 2222110 0011 245799999999999999999999887543 2367999999
Q ss_pred eecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccC-cccc
Q psy15223 975 YLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD-YSKD 1053 (2492)
Q Consensus 975 ~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~-~~~d 1053 (2492)
+++|+||+||||+++++.+.++++..||++|++|||++|.+|+|||||+||+|+|.++|++||+|++|||+++.. .++|
T Consensus 549 ~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D 628 (975)
T PRK06039 549 IVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWED 628 (975)
T ss_pred EEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999765 5899
Q ss_pred cccCHHH-HHHHHHHHHHHHHHHHHHh--hcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q psy15223 1054 LSISNEI-LNRVVETYRRIRNTLRFLL--ANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSK 1130 (2492)
Q Consensus 1054 ~~fs~~~-l~~~~~~~~kl~n~~rf~l--~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~ 1130 (2492)
++||++. ++.+.+.+++|||+++|++ +++.+|++.........+.+.|+|++++++++++++.++|++|+|++|++.
T Consensus 629 ~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~ 708 (975)
T PRK06039 629 LRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARA 708 (975)
T ss_pred ceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999 7777788999999999986 455555433222223446789999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeec
Q psy15223 1131 LQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQ 1210 (2492)
Q Consensus 1131 l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~ 1210 (2492)
|++|+ ++||++|++.+|+|+|+... +..+++++++|+++|+.++++|+|||||+|||||+.|+.. ...+|||++
T Consensus 709 l~~f~-~~lsn~Yi~~~k~r~w~~~~-~~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~----~~~~sv~~~ 782 (975)
T PRK06039 709 IRDFV-DDLSNWYIRRSRRRFWKEED-DPDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTRE----DAPESVHLA 782 (975)
T ss_pred HHHHH-HHHHHHHHHHhhhhhccCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccc----CCCCeeEec
Confidence 99999 89999999999999998743 4557789999999999999999999999999999999742 124799999
Q ss_pred cCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcce-EEEEEeCchhHHHHHHhHHHHHHhhhccce
Q psy15223 1211 LHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQA-EIILKINKLDFEILNEFGEELKFFLLTSSV 1287 (2492)
Q Consensus 1211 ~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a-~v~i~~~~~~~~~l~~~~~~L~~l~~vs~v 1287 (2492)
.||+.++...+..+++.++.++++. ..++.+|++.+++..... .+.+..+.+..+.++.+.+.|..+++|.+|
T Consensus 783 ~~P~~~~~~~d~~le~~~~~~~~ii----~~~r~~r~~~~i~~~~pl~~~~v~~~~~~~~~~~~~~~~i~~~~nv~~v 856 (975)
T PRK06039 783 DWPEVDESLIDEELEEAMDLVREIV----SLGRSARKKAGIKVRQPLSKITVAEDEEVAEALERYEDLIKDELNVKEV 856 (975)
T ss_pred CCCCCccccCCHHHHHHHHHHHHHH----HHHHHHHHHcCCCCCCccceEEEecCHHHHHHHHHHHHHHHHHhCcccc
Confidence 9999887666777888888777554 455568888877755443 344444433556778888889999998877
No 18
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-152 Score=1472.68 Aligned_cols=738 Identities=27% Similarity=0.483 Sum_probs=673.6
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHh---Cc---CCCHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLY---GK---NLSPIEIQNK 523 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~---~~---~~~~~e~~~~ 523 (2492)
++|+|..||||++|.||||||+|.++.|+++||+||+||+|+|+|||||||+|+|.+||+++ |. ++++++|+++
T Consensus 33 ~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~ 112 (877)
T COG0525 33 PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKK 112 (877)
T ss_pred CCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHH
Confidence 66999999999999999999999999999999999999999999999999999999999998 54 6789999999
Q ss_pred HHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccce
Q psy15223 524 ARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKK 603 (2492)
Q Consensus 524 ~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~ 603 (2492)
|++|.+++.+.+++|++|||+|+||+++|+||||.+.+.++.+|.+||++|||||+.++|||||.|+|||||.||||++.
T Consensus 113 ~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~ 192 (877)
T COG0525 113 CWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKEV 192 (877)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCccccchhhhhhcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
.+..+|++|++.+. +.+|+|+|||||||+|++||+|||+++
T Consensus 193 ~g~L~~i~y~l~~~---------------~~~i~VATTRPEtmlgdtAVaVhP~De------------------------ 233 (877)
T COG0525 193 EGKLYYIKYPLADG---------------DGYLVVATTRPETLLGDTAVAVHPDDE------------------------ 233 (877)
T ss_pred eeeEEEEEEecCCC---------------CceEEEEecCccccccceEEEECCCCh------------------------
Confidence 99999999999763 349999999999999999999999964
Q ss_pred HHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCc
Q psy15223 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 763 (2492)
Q Consensus 684 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~ 763 (2492)
|| ++|+|+++.+|+. ++++|||.++||++++|||+|+++|||+++||+++++|+| |+
T Consensus 234 --RY------------k~LvGk~v~lPl~------~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~L---p~ 290 (877)
T COG0525 234 --RY------------KHLVGKEVILPLV------GREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNL---PL 290 (877)
T ss_pred --hh------------HhhcCCEEecCCC------CCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCC---Cc
Confidence 55 5899999999999 8999999999999999999999999999999999999999 88
Q ss_pred ccccCCCCcccccCC-CCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchh
Q psy15223 764 INPVMDDGNFISTLP-LFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEK 842 (2492)
Q Consensus 764 ~~~vd~~G~~~~~~~-~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~ 842 (2492)
++.+|++|+++++++ +|+||++++||++|++.|++.|.|++.+++.|++|||||||+||++++++|||+++..
T Consensus 291 i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~------ 364 (877)
T COG0525 291 INIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLE------ 364 (877)
T ss_pred eEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHh------
Confidence 899999999998885 9999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhh--cceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCC
Q psy15223 843 KSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGI 920 (2492)
Q Consensus 843 ~~~~~~~~~~i~--~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~ 920 (2492)
++++++++.+ +++|+|+..++++.+|+++++||||||||+||||||+|||++||...+..... .
T Consensus 365 --la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~~~------------~ 430 (877)
T COG0525 365 --LAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEP------------E 430 (877)
T ss_pred --hHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCCCcEEeCCccc------------c
Confidence 9999999999 89999999999999999999999999999999999999999999876322100 0
Q ss_pred ccccccCchhhcCCCccCceecCCccccccccccccchhcccCcc---ccCCcCeeeeecccccchhhHHHHHHHHHHhc
Q psy15223 921 EIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK---KQLIFPADLYLEGSDQHRGWFHSSLLTSIILN 997 (2492)
Q Consensus 921 ~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~---~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~ 997 (2492)
+.+. ... +....+++++|||||||+||+++++++++..+ ++.+||.|+.++|.||+|+|..+|++.+..+.
T Consensus 431 ~~~~----~~~--~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~~~~~ 504 (877)
T COG0525 431 DPAA----AEK--CPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLT 504 (877)
T ss_pred chhh----hcc--CchhcccCCcchhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhHHHHHHHHHHHHHhc
Confidence 0000 000 11156889999999999999999999988752 25677999999999999999999999999999
Q ss_pred CCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc-CcccccccCHHHHHHHHHHHHHHHHHHH
Q psy15223 998 KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLR 1076 (2492)
Q Consensus 998 ~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~r 1076 (2492)
++.||+.|++||+|+|++|+|||||+||||+|.++|++||||+||||+++. ..++|++|+.+.++...++.+|+||..|
T Consensus 505 ~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~R 584 (877)
T COG0525 505 GEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATR 584 (877)
T ss_pred CCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999999999999999999999999974 7899999999999999999999999999
Q ss_pred HHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccC
Q psy15223 1077 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK 1156 (2492)
Q Consensus 1077 f~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~ 1156 (2492)
|+++|+.+..+..... ...++.||||+++|+++++.++++|++|+|..|.++|++|+|++||++|++++|.++|.+
T Consensus 585 fv~~~~~~~~~~~~~~--~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~-- 660 (877)
T COG0525 585 FVLMNLDDLGPDDLDL--LALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG-- 660 (877)
T ss_pred HHHhcccccCcccccc--cccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCc--
Confidence 9999987655432111 233789999999999999999999999999999999999999999999999999999987
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHH
Q psy15223 1157 NSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRS 1236 (2492)
Q Consensus 1157 ~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~ 1236 (2492)
...+++++.+|+.+|+.+++||||||||+|||||+.++.. +||+++.||...+...+++.+..++.+.+
T Consensus 661 -~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~-------~si~~~~~P~~~~~~~d~~a~~~~~~l~~--- 729 (877)
T COG0525 661 -EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT-------ESIHLASWPEVDEELIDEEAEKEFELLKE--- 729 (877)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC-------CeEEeccCCCcchhhccHHHHHHHHHHHH---
Confidence 5566799999999999999999999999999999999763 69999999997766666666677777764
Q ss_pred HHHHHHHHHHhhCCCCCCcceEEEEEeCchhHHHHHHhHHHHHHhhhccceEEee
Q psy15223 1237 KVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQ 1291 (2492)
Q Consensus 1237 ~v~~~le~~R~~k~i~~s~~a~v~i~~~~~~~~~l~~~~~~L~~l~~vs~v~i~~ 1291 (2492)
+..+++++|++.++..+....+.+....+..+.++.....|..+++++++++..
T Consensus 730 -ii~~iR~~r~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~ 783 (877)
T COG0525 730 -IISAIRNLRAEMNLSPSAPLKVVLVGSEELEDRLEANEDDIKGLANLEELEILS 783 (877)
T ss_pred -HHHHHHHHHHHcCCCCCCceeEEEeccHhHHHHHHHHHHHHHHhcCcceeeecc
Confidence 455667899999998888877776554555677788888999999999998875
No 19
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=1.2e-151 Score=1577.05 Aligned_cols=799 Identities=41% Similarity=0.732 Sum_probs=703.7
Q ss_pred hhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccc
Q psy15223 1567 ILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 1646 (2492)
Q Consensus 1567 ~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~ 1646 (2492)
+|++++.++|++||++|+++++|++..+.+.++++|++++|||||||.|||||++|++++||++||+||+||+|+|+|||
T Consensus 3 ~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~ 82 (861)
T TIGR00392 3 PMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGW 82 (861)
T ss_pred CCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCc
Confidence 46789999999999999999999976544567889999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHhccC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHH
Q psy15223 1647 DCHGMPIEIQIEKLYGKN-------LSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGI 1719 (2492)
Q Consensus 1647 D~hGlPie~~a~k~~~~~-------~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~ 1719 (2492)
||||||||.+|+|.+|.. .++++|+++|++|+.++++.|++||++||+|+||+|+|.|+||.|+++++|+|.+
T Consensus 83 D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~ 162 (861)
T TIGR00392 83 DTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKE 162 (861)
T ss_pred CCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHH
Confidence 999999999999987742 3457899999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceEEeCcccccCCCCCccccccccccee----eecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcch
Q psy15223 1720 IFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKK----KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWT 1795 (2492)
Q Consensus 1720 L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~----~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~T 1795 (2492)
|+++|||||+.+||+|||.|+|+|||+||+|++ +.++++||+|++.+..... .. .+..+++||||||||
T Consensus 163 l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~----~~---~~~~~l~i~TTrP~T 235 (861)
T TIGR00392 163 AHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTY----LK---VKLSSLLIWTTTPWT 235 (861)
T ss_pred HHHCCCEeecceeeecCCCcCCcccHHHHhcccccccccCceEEEEEEecCCcccc----cc---cccceEEEEECCccc
Confidence 999999999999999999999999999999987 8899999999986432100 00 011289999999999
Q ss_pred hccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCcee---
Q psy15223 1796 IPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLS--- 1872 (2492)
Q Consensus 1796 l~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~--- 1872 (2492)
||||+||||||+++|++++.+++ ++.||+++++++++.+..+.+...+.+++|.+|+|++|.||++ ++++
T Consensus 236 l~~~~ai~v~p~~~Y~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~------~~~~~~~ 308 (861)
T TIGR00392 236 LPSNLAIAVHPDFEYALVQDNTK-VEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLY------DFVSQLK 308 (861)
T ss_pred ccCCeeeeeCCCCceEEEEcCCC-CcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCC------ccccccc
Confidence 99999999999999999997532 3689999999999987766442234999999999999999998 6677
Q ss_pred ---cE-EecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCC-------CCCCccHHhhhHH
Q psy15223 1873 ---PI-YLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLP-------LFGGMSIWKASKL 1941 (2492)
Q Consensus 1873 ---pi-~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~-------~~~G~~v~~a~~~ 1941 (2492)
|+ ++++||++++|||+||+|||||++||+++++||| ++++++|++|+|+.+.+ .|.|+++++|++.
T Consensus 309 ~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l---~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ 385 (861)
T TIGR00392 309 EGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGL---EVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKI 385 (861)
T ss_pred cCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCC---CcccccCCCceECCcCccccccccccCCccHHHhHHH
Confidence 86 5559999999999999999999999999999999 78999999999987665 4899999999999
Q ss_pred HHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhh
Q psy15223 1942 ICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMI 2021 (2492)
Q Consensus 1942 i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l 2021 (2492)
|++.|+++|.|++.+++.|+||||||||+||++++++||||++++ +++++++++++++|+|++.++++.+||
T Consensus 386 ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~--------~k~~~l~~~~~i~~~P~~~~~~~~~~l 457 (861)
T TIGR00392 386 IIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKD--------IKDQMLEQIKKVNWVPEWGEGRFGNWL 457 (861)
T ss_pred HHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHH--------HHHHHHHHhCCcEEECchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988 999999999999999999999999999
Q ss_pred hCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCC------CccCceecccc
Q psy15223 2022 LNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD------DAVNYKKSNDT 2095 (2492)
Q Consensus 2022 ~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~------~~~~~~~~~dv 2095 (2492)
++++||||||||+||||||+|+|++|+.. ....+++++.+.+...|.+.|+.....++++. ++..+.|++||
T Consensus 458 ~~l~DW~ISRqr~WG~pIP~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dv 535 (861)
T TIGR00392 458 ENRPDWCISRQRYWGIPIPIWYCEDTGEP--IVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDV 535 (861)
T ss_pred hCCCcceeeccccCCCeeeEEEECCCCCC--cCchhHHHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEEcccc
Confidence 99999999999999999999999999875 45566777777777788999887555544431 23679999999
Q ss_pred cccccccCcchhhhccCCc---cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeec
Q psy15223 2096 LDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKS 2172 (2492)
Q Consensus 2096 lDvWfdSg~~~~~~~~~~~---~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS 2172 (2492)
||||||||++|++.+.... +++.|||+|+|++|+||+||||++++++++++.+..||+++++||||++.+|+|||||
T Consensus 536 lDvWfdS~~~~~~~~~~~~~~~~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKS 615 (861)
T TIGR00392 536 LDVWFDSGSMPYASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKS 615 (861)
T ss_pred ccchhhcCcchHHhcCCCCCcchhhccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCC
Confidence 9999999999998886432 2467899999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCcchhhhccChhHHHHHHhccCCCCcccccHHHHHHHHH-HHHHHHHHHHHHH--hcCCCCCCCcccccccccch
Q psy15223 2173 KGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE-TYRRIRNTLRFLL--ANTSDFNPNINIIKISDMVE 2249 (2492)
Q Consensus 2173 ~GNvi~p~~ii~~yGaD~lR~~l~s~~~~~d~~fs~~~l~~~~~-~~~kl~n~~r~~~--~~~~~~~~~~~~~~~~~~~~ 2249 (2492)
+||+|+|.++|++||+|++|||+++.++.+|++|+++.++.+.+ ..++++|+++|+. +++.++.+.....+...+..
T Consensus 616 kGNvI~p~d~i~~yGaDalR~~ll~~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 695 (861)
T TIGR00392 616 LGNVVDPLKVINKYGADILRLYVASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPE 695 (861)
T ss_pred CCCCCCHHHHHHHcCHHHHHHHHHhCCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCH
Confidence 99999999999999999999999977899999999999988766 6778899999998 77776664322222334567
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHH
Q psy15223 2250 IDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLI 2329 (2492)
Q Consensus 2250 ~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lL 2329 (2492)
.|+|++++++++++++.++|++|+|++|++.+++|++.++||+||+.+|+++|+...++..+ +++++++.+++.++++|
T Consensus 696 ~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~-~~~~~l~~~l~~l~~lL 774 (861)
T TIGR00392 696 EDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKR-AAQTTLYYALLTLVRLL 774 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999988899999999999999876554444 88999999999999999
Q ss_pred hccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15223 2330 SPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGII 2401 (2492)
Q Consensus 2330 aPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i 2401 (2492)
+|||||+|||||+.|+.. ...+||+.++||..++.+.++.++..++.+++ +.+.++++|++.++
T Consensus 775 ~P~~P~~aeeiw~~L~~~----~~~~si~~~~wP~~~~~~~d~~~~~~~~~l~~----~i~~ir~ir~~~~~ 838 (861)
T TIGR00392 775 APFLPHTAEEIYQNLPGG----EEEESVHLNLWPEVDEEFIDEALEANMAIVRE----IVEAFLALRDAANK 838 (861)
T ss_pred HHhhhhhHHHHHHhcccc----CCCCceeccCCCCCchhhcCHHHHHHHHHHHH----HHHHHHHHHHHhCh
Confidence 999999999999999753 12469999999998877667666655444332 33444555554443
No 20
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=7e-151 Score=1569.38 Aligned_cols=792 Identities=41% Similarity=0.717 Sum_probs=702.1
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcC--
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKN-- 514 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~-- 514 (2492)
.+|+... .+.++++|++|+|||||||.||||||+|+|++||++||+||+||+|+|+|||||||||||.+|+|.+|..
T Consensus 23 ~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~ 102 (861)
T TIGR00392 23 DIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGK 102 (861)
T ss_pred CchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccc
Confidence 3454433 2457889999999999999999999999999999999999999999999999999999999999987742
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCC
Q psy15223 515 -----LSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 589 (2492)
Q Consensus 515 -----~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~ 589 (2492)
.++++|+++|++|+.++++.|++||+|||+++||+|+|.||||.|+++++|+|.+|+++|||||+.+||+|||.|
T Consensus 103 ~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~ 182 (861)
T TIGR00392 103 KEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRC 182 (861)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecceeeecCCCc
Confidence 345789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccccccccccc----eeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEe
Q psy15223 590 KSALAEAEIEYKK----KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHI 665 (2492)
Q Consensus 590 ~taLae~Evey~~----~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~ 665 (2492)
+|+|||+||+|++ +.++++||+|++.+..... . ..+..+++||||||||||||+||||||+++|++++.
T Consensus 183 ~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~----~---~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~ 255 (861)
T TIGR00392 183 RTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTY----L---KVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQD 255 (861)
T ss_pred CCcccHHHHhcccccccccCceEEEEEEecCCcccc----c---ccccceEEEEECCcccccCCeeeeeCCCCceEEEEc
Confidence 9999999999987 8999999999996532100 0 011128999999999999999999999999999997
Q ss_pred cCCCCceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCcee------cEE-ecCCcccCCCCcc
Q psy15223 666 KNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLS------PIY-LGDYITVDSGTGI 738 (2492)
Q Consensus 666 ~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~------pii-~~~~V~~~~GTG~ 738 (2492)
++ .++.||+|+++++++.+..+.+...+.+++|++|.|++|.||++ ++++ |++ .++||++++|||+
T Consensus 256 ~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~------~~~~~~~~~~p~v~~~~~V~~~~GTG~ 328 (861)
T TIGR00392 256 NT-KVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLY------DFVSQLKEGAPVVIGGDHVTTEDGTGI 328 (861)
T ss_pred CC-CCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCC------ccccccccCCcEEeCCCCCCCCCCCce
Confidence 53 23689999999999988876554455999999999999999998 6677 875 5599999999999
Q ss_pred EEecCCCCHHHHHHHHHcCCCCCCcccccCCCCcccccCC-------CCCCcchhhchHHHHHHHHhcCCeeeeeeeccc
Q psy15223 739 VHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLP-------LFGGMSIWKASKLICSYLKKSKTLFNIEMFEHS 811 (2492)
Q Consensus 739 Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~-------~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~ 811 (2492)
||+|||||++||++|++||| +++++||++|+|+.+.+ .|.|+++++|++.|++.|++.|.|++.+++.|+
T Consensus 329 V~~~Pah~~~D~~~~~~~~l---~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~ 405 (861)
T TIGR00392 329 VHTAPGHGEEDYEIGKKYGL---EVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHS 405 (861)
T ss_pred eEcCCCCCHHHHHHHHHcCC---CcccccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecC
Confidence 99999999999999999999 78899999999987765 488999999999999999999999999999999
Q ss_pred cccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeE
Q psy15223 812 YMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAF 891 (2492)
Q Consensus 812 yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~ 891 (2492)
||||||||+||++++++||||++++ +++++++++++++|+|+++++++.+||++++||||||||+||||||+
T Consensus 406 ~p~~~R~~~~v~~~~~~QWFi~~~~--------~k~~~l~~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~ 477 (861)
T TIGR00392 406 YPHCWRTKTPVIYRATEQWFIKTKD--------IKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPI 477 (861)
T ss_pred CCccCCCCCEEEEecCccccEEcHH--------HHHHHHHHhCCcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeE
Confidence 9999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred EEECCCCccccCcHHHHHHHHHHHhhcCCccccccCchhhcCC------CccCceecCCccccccccccccchhcccCc-
Q psy15223 892 FIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD------DAVNYKKSNDTLDVWFDSGITHQTVIRGSH- 964 (2492)
Q Consensus 892 ~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~~~~~------~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~- 964 (2492)
|+|++||+. +...+++++.+.+...|.+.|+.....++++. ++..+.|++||||||||||++|+++++.+.
T Consensus 478 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~~~~~ 555 (861)
T TIGR00392 478 WYCEDTGEP--IVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYPFE 555 (861)
T ss_pred EEECCCCCC--cCchhHHHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcCCCCC
Confidence 999999976 46677888888788889999987665554431 236799999999999999999998887543
Q ss_pred --cccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHH
Q psy15223 965 --KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 1042 (2492)
Q Consensus 965 --~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lR 1042 (2492)
++++|||+|+|++|+||+||||++++++++++.+..||+++++||||+|.+|+|||||+||+|+|.++|++||+|++|
T Consensus 556 ~~~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR 635 (861)
T TIGR00392 556 NEKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILR 635 (861)
T ss_pred cchhhccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHH
Confidence 246899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCcccccccCHHHHHHHHH-HHHHHHHHHHHHh--hcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH
Q psy15223 1043 LWVASTDYSKDLSISNEILNRVVE-TYRRIRNTLRFLL--ANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY 1119 (2492)
Q Consensus 1043 l~l~s~~~~~d~~fs~~~l~~~~~-~~~kl~n~~rf~l--~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~ 1119 (2492)
||+++.++.+|++|+++.++...+ ..++++|+++|++ +++.+|.+....++...+...|+|++++++++++++.++|
T Consensus 636 ~~ll~~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~ 715 (861)
T TIGR00392 636 LYVASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEAL 715 (861)
T ss_pred HHHHhCCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999988889999999999988766 6677889999998 8887776532223334467889999999999999999999
Q ss_pred hccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCc
Q psy15223 1120 RMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNF 1199 (2492)
Q Consensus 1120 ~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~ 1199 (2492)
++|+|++|++.+++|++.+||++|++.+|+|+|+...++..| +++++|+.+++.++++|+|||||+|||||+.|+..
T Consensus 716 e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~-~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~-- 792 (861)
T TIGR00392 716 EKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKR-AAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGG-- 792 (861)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCHHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc--
Confidence 999999999999999988899999999999999877665444 89999999999999999999999999999999753
Q ss_pred cccCCCceeeccCCCCcccCCchHHH-------HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEE
Q psy15223 1200 YIESGETIFTQLHYKLPKVYNSKKLL-------YKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIIL 1261 (2492)
Q Consensus 1200 ~~~~~~SV~~~~wp~~~~~~~~~~~~-------~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i 1261 (2492)
...+||+++.||..++...+..++ +.++.++++|++++..++..++++.|+.++++.|.+
T Consensus 793 --~~~~si~~~~wP~~~~~~~d~~~~~~~~~l~~~i~~ir~ir~~~~~~~~~~~~~~~i~~~~~~~~~~ 859 (861)
T TIGR00392 793 --EEEESVHLNLWPEVDEEFIDEALEANMAIVREIVEAFLALRDAANKKLRQPLKELVIGKSLEAVLKA 859 (861)
T ss_pred --CCCCceeccCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHhChhhhhHhhcCEEcCCchhheEe
Confidence 124699999999977654455444 446667777777777788888877788888877665
No 21
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=1.2e-147 Score=1527.08 Aligned_cols=791 Identities=22% Similarity=0.363 Sum_probs=682.5
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
.+++.++|++||++|+++++|++.. +.++++|+|++||||+||.||||||+|++++||++||+||+||+|+|+|||||
T Consensus 99 ~yd~~~iE~~w~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~ 176 (1066)
T PLN02381 99 QYSPSAVEKSWYAWWEKSGYFGADA--KSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDH 176 (1066)
T ss_pred CCCHHHHHHHHHHHHHHCCCccCCc--cCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCC
Confidence 4788899999999999999998743 45678899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHh----cc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHH
Q psy15223 1649 HGMPIEIQIEKLY----GK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIF 1721 (2492)
Q Consensus 1649 hGlPie~~a~k~~----~~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~ 1721 (2492)
||||+|.+++|.+ |. ++++++|++.|++|+.++++.|++||++||+|+||+++|+||||.|+++++|+|.+||
T Consensus 177 ~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~ 256 (1066)
T PLN02381 177 AGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLY 256 (1066)
T ss_pred CcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHH
Confidence 9999999999876 32 5789999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchh-hH----hhhccCCCCCCccEEEEeecCcchh
Q psy15223 1722 KKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEK-IK----SIFNLKNLPSGKGYIVIWTSTPWTI 1796 (2492)
Q Consensus 1722 ~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~-~~----~~~~~~~~~~~~~~l~i~TT~P~Tl 1796 (2492)
++|||||+.+||||||.|+|+|||+||+|++..++++| +|+...... +. ..+.+. +++.+++|||||||||
T Consensus 257 ~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~-~~~~~~~~~~~g~~~~~~Y~l~---~~~~~i~vATtRpEti 332 (1066)
T PLN02381 257 KEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLL-KVPGYDKPVEFGVLTSFAYPLE---GGLGEIVVATTRIETM 332 (1066)
T ss_pred HCCCEEeccccccCCCCCCCCccHHHhhhhccccchhh-cccCCCcceeeEEEEEEEEEec---CCCCEEEEecCCHHHH
Confidence 99999999999999999999999999999998888766 554321110 00 001111 1234799999999999
Q ss_pred ccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEe
Q psy15223 1797 PANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL 1876 (2492)
Q Consensus 1797 ~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~ 1876 (2492)
+|++||+|||+++ + +++|+|++|.|||+ ++.+|||.
T Consensus 333 ~g~~avaV~P~d~--------------------------r------------y~~L~G~~~~~Pl~------~~~ipIi~ 368 (1066)
T PLN02381 333 LGDTAIAIHPDDE--------------------------R------------YKHLHGKFAVHPFN------GRKLPIIC 368 (1066)
T ss_pred hcccceeeCCCCc--------------------------c------------hhhhCCCEEECCCC------CCEEEEEE
Confidence 9999999999953 1 23789999999998 89999998
Q ss_pred c-CccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCC-CCCCccHHhhhHHHHHHHHhcCCcce
Q psy15223 1877 G-DYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLP-LFGGMSIWKASKLICSYLKKSKTLFN 1954 (2492)
Q Consensus 1877 ~-~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~-~~~G~~v~~a~~~i~~~L~~~g~l~~ 1954 (2492)
+ +||++++|||+||++||||++||+++++|+| ++++++|++|+|+++++ .|+|+++++||+.|++.|++.|+|++
T Consensus 369 d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L---~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~ 445 (1066)
T PLN02381 369 DAILVDPNFGTGAVKITPAHDPNDFEVGKRHNL---EFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRG 445 (1066)
T ss_pred CCccccccCCCCcEEecCCCChHHHHHHHHcCC---CeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEec
Confidence 6 5999999999999999999999999999999 99999999999998864 89999999999999999999999999
Q ss_pred eeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhh-----hcceEecccchhHHHHhhhCCCCccc
Q psy15223 1955 IEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAI-----NKIKFFPSWGKDRLKSMILNRPDWTI 2029 (2492)
Q Consensus 1955 ~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~-----~~v~~~P~~~~~~~~~~l~~~~DW~I 2029 (2492)
.+.++|+||||||||+||++++++||||++++ +++++++++ ++|+|+|++.++++.+||++++||||
T Consensus 446 ~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~--------l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcI 517 (1066)
T PLN02381 446 AKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSS--------MAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCI 517 (1066)
T ss_pred ceeeecCCCeeCCCCceEEEeecccceEEchH--------HHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCcccee
Confidence 99999999999999999999999999999998 999999998 78999999999999999999999999
Q ss_pred ccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCc--cccccc-chhhhcC-------CCccCceecccccccc
Q psy15223 2030 SRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGI--EIWQNL-DIKEFLG-------DDAVNYKKSNDTLDVW 2099 (2492)
Q Consensus 2030 SRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~--~~w~~~-~~~~~~~-------~~~~~~~~~~dvlDvW 2099 (2492)
|||||||||||+|+|..++.. +...|+ +.|+.. +..+.++ +....+.+++||||||
T Consensus 518 SRQr~WG~pIPiw~~~~~~~~--------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtW 583 (1066)
T PLN02381 518 SRQLWWGHRIPAWYVTLEDDQ--------------LKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTW 583 (1066)
T ss_pred eeecccCCccceEEeccChhh--------------cccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEE
Confidence 999999999999998621110 011222 345422 2122221 1112489999999999
Q ss_pred cccCcchhhhccCCc---cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCc
Q psy15223 2100 FDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNI 2176 (2492)
Q Consensus 2100 fdSg~~~~~~~~~~~---~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNv 2176 (2492)
||||++|+++++... +++.+||+|++++|.||+||||++|++.++.+++++||++|++||||+|.+|+|||||+|||
T Consensus 584 F~Sg~~p~~~lg~P~~~~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNv 663 (1066)
T PLN02381 584 FSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNV 663 (1066)
T ss_pred EeCCchHHHHhcCCCCHHHHhccCCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCCC
Confidence 999999999987532 23568999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhh-------------------------------------ccChhHHHHHHhcc-CCCCcccccHHHHHHHHHHH
Q psy15223 2177 IKPQKLCN-------------------------------------LFGAEILRLWVAST-DYSKDLSISNEILNRVVETY 2218 (2492)
Q Consensus 2177 i~p~~ii~-------------------------------------~yGaD~lR~~l~s~-~~~~d~~fs~~~l~~~~~~~ 2218 (2492)
|+|.++|+ +||||+||||+++. ..++|++|+.+.+....+++
T Consensus 664 IdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~ 743 (1066)
T PLN02381 664 IDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWC 743 (1066)
T ss_pred CCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHH
Confidence 99999999 79999999999974 56789999999999899999
Q ss_pred HHHHHHHHHHHhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhh
Q psy15223 2219 RRIRNTLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDIL 2297 (2492)
Q Consensus 2219 ~kl~n~~r~~~~~~~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~ 2297 (2492)
++|||++||+++++.+ +.+.. ..+...+..+|+||+++|+.+++.++++|++|+|+.|++.++.|++++|||+||+.+
T Consensus 744 nKlwNa~rf~~~~~~~~~~~~~-~~~~~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~dl~d~Yie~~ 822 (1066)
T PLN02381 744 NKLWNAVRFAMSKLGDDYTPPA-TLSVETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAI 822 (1066)
T ss_pred HHHHHHHHHHHhhcccccCccc-ccCccccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 9999999999887753 44321 112234567999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccC-ChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHH
Q psy15223 2298 KDRLYTTKK-NSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLY 2376 (2492)
Q Consensus 2298 K~~l~~~~~-~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~ 2376 (2492)
|+++|+... ++.++++++.+|++++..+++||+|||||+|||||+.|+... +....+||+++.||+.++.+.|+++++
T Consensus 823 K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~~-~~~~~~SI~~~~~P~~~~~~~d~~le~ 901 (1066)
T PLN02381 823 KPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQPK-DHTRKDSIMISEYPSAVEAWTNEKVEY 901 (1066)
T ss_pred HHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhc-cCCCCCeeEeCCCCCCCchhCCHHHHH
Confidence 999997543 245677899999999999999999999999999999997420 001236999999999888777877877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CCCCCceeEEEEE-eChhhHHHHHHhHHHHHHhhhcccEEEe
Q psy15223 2377 KYMILKKIRSKVMQKLEKIRSTG-IIGSSLQAEIILK-INKLDFEILNEFGEELKFFLLTSSVSLF 2440 (2492)
Q Consensus 2377 ~~~~~~~~r~~v~~~i~~~R~~~-~i~~~~~~~v~i~-~~~~~~~~l~~~~~~L~~l~~vs~v~i~ 2440 (2492)
.++.+. .+.+.+|++|++. .+..+....+.+. .+....+.++.+...|..++++++|++.
T Consensus 902 ~~~~l~----~ii~~iR~lR~~~~~i~~k~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~v~~~ 963 (1066)
T PLN02381 902 EMDLVL----STVKCLRSLRAEVLEKQKNERLPAFALCRNQEIAAIIKSHQLEILTLANLSSLKVL 963 (1066)
T ss_pred HHHHHH----HHHHHHHHHHHHccccccCcCCcEEEEcCCHHHHHHHHHHHHHHHHhhCCCeeeee
Confidence 777665 4778889999988 5655544444433 3445567788888899999999999885
No 22
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=3e-146 Score=1531.45 Aligned_cols=792 Identities=23% Similarity=0.369 Sum_probs=688.8
Q ss_pred hccccCCCCchhHHHhhhcccchhcc--cccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIR--KASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPG 1645 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~--~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G 1645 (2492)
-.+++.++|++||++|+++++|++.. ..+.++++|+|++|||||||.||||||+|++++||++||+||+||+|+|+||
T Consensus 26 ~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G 105 (995)
T PTZ00419 26 ASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPG 105 (995)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 35788999999999999999998742 1245678999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHH
Q psy15223 1646 YDCHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFG 1718 (2492)
Q Consensus 1646 ~D~hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~ 1718 (2492)
|||||||+|.++|+.++. ++++++|++.|++|+.++++.|++||++||+++||+|+|+||||.|+++++|+|.
T Consensus 106 ~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~ 185 (995)
T PTZ00419 106 TDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFV 185 (995)
T ss_pred CCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHH
Confidence 999999999999987632 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCch---hh--HhhhccCCCCCCc-cEEEEeecC
Q psy15223 1719 IIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPE---KI--KSIFNLKNLPSGK-GYIVIWTST 1792 (2492)
Q Consensus 1719 ~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~---~~--~~~~~~~~~~~~~-~~l~i~TT~ 1792 (2492)
+|+++|||||+.+||+|||.|+|+|||+||+|++..++++ ++|+..... .. .-+|.+. +.+ .+++|||||
T Consensus 186 ~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~-~~~~~~~~~~~~g~l~~i~f~l~---~~~~~~l~vaTTr 261 (995)
T PTZ00419 186 RLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTK-ITIPGYDKKVEVGVLWHFAYPLE---DSGQEEIVVATTR 261 (995)
T ss_pred HHHHCCCEEecceeeecCCCCCCCCchhhcccccccccce-eeccccccccccceeEEEEEeec---CCCCcEEEEEeCC
Confidence 9999999999999999999999999999999999887775 444432110 00 0001111 122 399999999
Q ss_pred cchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCC-CccccCCCce
Q psy15223 1793 PWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPL-SNIDINYNRL 1871 (2492)
Q Consensus 1793 P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl-~~~~~~~~~~ 1871 (2492)
||||+||+||||||+++ +|. +|+|++|.||+ + ++.
T Consensus 262 PeTl~g~~avav~P~d~--------------------------~y~------------~l~G~~~~~Pl~~------~~~ 297 (995)
T PTZ00419 262 IETMLGDVAVAVHPKDE--------------------------RYK------------KLHGKELIHPFIP------DRK 297 (995)
T ss_pred cchhhhCeEEEECCCCc--------------------------HHH------------HhcCCEEECCccC------CCE
Confidence 99999999999999963 121 68999999999 7 889
Q ss_pred ecEEecC-ccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcC
Q psy15223 1872 SPIYLGD-YITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSK 1950 (2492)
Q Consensus 1872 ~pi~~~~-~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g 1950 (2492)
+||++++ ||++++|||+||++||||++||+++++||| ++++++|++|+|++++|.|.|+.+++||+.|++.|+++|
T Consensus 298 ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L---~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g 374 (995)
T PTZ00419 298 IPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNL---PFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMG 374 (995)
T ss_pred EEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCC---CeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcC
Confidence 9999999 999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhh--cceEecccchhHHHHhhhCCCCcc
Q psy15223 1951 TLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWT 2028 (2492)
Q Consensus 1951 ~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~--~v~~~P~~~~~~~~~~l~~~~DW~ 2028 (2492)
.+++.+.+.|+||||||||+||++++++|||+++++ |+++++++++ +++|+|+..++++.+||++++|||
T Consensus 375 ~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~--------~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWc 446 (995)
T PTZ00419 375 LLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKD--------MAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWC 446 (995)
T ss_pred CEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHH--------HHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccce
Confidence 999999999999999999999999999999999998 9999999997 799999999999999999999999
Q ss_pred cccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccccccc-chhhhc---------CCCccCceeccccccc
Q psy15223 2029 ISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNL-DIKEFL---------GDDAVNYKKSNDTLDV 2098 (2492)
Q Consensus 2029 ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~-~~~~~~---------~~~~~~~~~~~dvlDv 2098 (2492)
|||||+||||||+|+|++|+.... ..+.+.|+-. ...+.+ +.++..+.|++|||||
T Consensus 447 ISRQr~WG~pIP~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDt 512 (995)
T PTZ00419 447 ISRQLWWGHRIPAYRVISKGPETD--------------PSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDT 512 (995)
T ss_pred eeeecccCceeeEEEeCCCCcccc--------------CCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEE
Confidence 999999999999999999874310 1112223211 111111 1123468999999999
Q ss_pred ccccCcchhhhccCCc---cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCC
Q psy15223 2099 WFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGN 2175 (2492)
Q Consensus 2099 WfdSg~~~~~~~~~~~---~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN 2175 (2492)
|||||++|+++++... +++++||+|++++|+||+|+||++|++.+..+.++.||++|++||+|+|.+|+|||||+||
T Consensus 513 WFdS~l~p~~~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGN 592 (995)
T PTZ00419 513 WFSSGLFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGN 592 (995)
T ss_pred EEeCCHHHHHHhCCCCChHHHhhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcccCCCC
Confidence 9999999999886532 2366899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhh-------------------------------------ccChhHHHHHHhc-cCCCCcccccHHHHHHHHHH
Q psy15223 2176 IIKPQKLCN-------------------------------------LFGAEILRLWVAS-TDYSKDLSISNEILNRVVET 2217 (2492)
Q Consensus 2176 vi~p~~ii~-------------------------------------~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~ 2217 (2492)
||+|.++|+ +||||+||||+++ ++.++|++|+.+.+....++
T Consensus 593 vIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f 672 (995)
T PTZ00419 593 VIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHF 672 (995)
T ss_pred cCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHH
Confidence 999999999 8999999999996 56789999999999988899
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccc-----ccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhh
Q psy15223 2218 YRRIRNTLRFLLANTSDFNPNINI-----IKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSF 2292 (2492)
Q Consensus 2218 ~~kl~n~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~ 2292 (2492)
+++|||+++|+++++.++.+.... .+...+..+|+||+++++++++.++++|++|+|+.|++.+++|+++++||+
T Consensus 673 ~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~~~~n~ 752 (995)
T PTZ00419 673 CNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDV 752 (995)
T ss_pred HHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhHHH
Confidence 999999999999887765332111 112345678999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCH
Q psy15223 2293 YLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSK 2372 (2492)
Q Consensus 2293 Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~ 2372 (2492)
||+.+|+|++.. .++..+++++++|+++++.+++||+|||||+|||||+.|+... ...+||++++||..++.+.++
T Consensus 753 Yie~~K~~l~~~-~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~~~---~~~~si~~~~~P~~~~~~~d~ 828 (995)
T PTZ00419 753 YLELIKPRLSKQ-SDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPNYL---RKSESISIAKYPQPNPGWNNE 828 (995)
T ss_pred HHHHhhhhhhcC-CCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhccC---CCCCeeeccCCCCCCcccCCH
Confidence 999999998432 3445677899999999999999999999999999999997420 124699999999988777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEe-ChhhHHHHHHhHHHHHHhhhcccEEEe
Q psy15223 2373 KLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKI-NKLDFEILNEFGEELKFFLLTSSVSLF 2440 (2492)
Q Consensus 2373 ~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~-~~~~~~~l~~~~~~L~~l~~vs~v~i~ 2440 (2492)
+++..|+.++ .+.+.+|++|++.+|+.+....+.+.. +.+..+.++.+.+.|+.++++++|++.
T Consensus 829 ~~e~~~~~~~----~ii~~iR~~r~~~~i~~~~~l~~~i~~~~~~~~~~~~~~~~~i~~l~~~~~v~~~ 893 (995)
T PTZ00419 829 ALDEEMKIIM----SIVKSIRSLIATLGIPNKTKPDCYVTAKDAELIELIESAENLISTLAKIGSVSVI 893 (995)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHcCCCCCCceeEEEEeCCHHHHHHHHHHHHHHHHhcCCCeeEEe
Confidence 7877777665 477889999999999887776665544 445567788888999999999999886
No 23
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=4.2e-145 Score=1501.85 Aligned_cols=766 Identities=23% Similarity=0.366 Sum_probs=659.3
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHh----Cc---CCCHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLY----GK---NLSPI 518 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~----~~---~~~~~ 518 (2492)
+.++++|+|++|||||||.||||||+|+|++||++||+||+||+|+|+|||||||||+|.+|++.+ |. +++++
T Consensus 124 ~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re 203 (1066)
T PLN02381 124 KSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGRE 203 (1066)
T ss_pred cCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHH
Confidence 346788999999999999999999999999999999999999999999999999999999999877 32 57899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccc
Q psy15223 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI 598 (2492)
Q Consensus 519 e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Ev 598 (2492)
+|+++|++|+.++++.|++||++||+++||+++|+||||.|+++++|+|.+||++|||||+.+||||||.|+||||++||
T Consensus 204 ~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EV 283 (1066)
T PLN02381 204 EFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEV 283 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeccEEEEEeecCCchh---hh--hhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCcee
Q psy15223 599 EYKKKYDFSIYVGFSFSEPEK---IK--SIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLL 673 (2492)
Q Consensus 599 ey~~~~~~s~yv~f~~~~~~~---~~--~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~ 673 (2492)
+|.++.++++| +|+..+... .. ..+.+. +.+.+++|||||||||+|++||+|||+++
T Consensus 284 ey~d~~~~s~~-~~~~~~~~~~~g~~~~~~Y~l~---~~~~~i~vATtRpEti~g~~avaV~P~d~-------------- 345 (1066)
T PLN02381 284 DYIDIKERTLL-KVPGYDKPVEFGVLTSFAYPLE---GGLGEIVVATTRIETMLGDTAIAIHPDDE-------------- 345 (1066)
T ss_pred hhhccccchhh-cccCCCcceeeEEEEEEEEEec---CCCCEEEEecCCHHHHhcccceeeCCCCc--------------
Confidence 99999988877 666432210 00 001111 12357999999999999999999999964
Q ss_pred eeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEec-CCcccCCCCccEEecCCCCHHHHHH
Q psy15223 674 ILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLG-DYITVDSGTGIVHSAPAYGIEDFLI 752 (2492)
Q Consensus 674 i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~-~~V~~~~GTG~Vh~aPahg~~D~~~ 752 (2492)
+ +++|+|++|.|||. ++.+|||.+ +||++++|||+||+|||||++||++
T Consensus 346 ------------r------------y~~L~G~~~~~Pl~------~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~ 395 (1066)
T PLN02381 346 ------------R------------YKHLHGKFAVHPFN------GRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEV 395 (1066)
T ss_pred ------------c------------hhhhCCCEEECCCC------CCEEEEEECCccccccCCCCcEEecCCCChHHHHH
Confidence 1 25789999999998 889999986 5999999999999999999999999
Q ss_pred HHHcCCCCCCcccccCCCCcccccC-CCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccce
Q psy15223 753 FKKQNMKDSDIINPVMDDGNFISTL-PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWF 831 (2492)
Q Consensus 753 ~~~~~l~~~~~~~~vd~~G~~~~~~-~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWF 831 (2492)
|++||| ++++++|++|+|++++ +.|+|+++++||+.|++.|++.|.|++.+.++|+||||||||+||++++++|||
T Consensus 396 ~~~~~L---~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWF 472 (1066)
T PLN02381 396 GKRHNL---EFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWF 472 (1066)
T ss_pred HHHcCC---CeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccce
Confidence 999999 8999999999999886 489999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcchhHHHHHHHHHHh-----hcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHH
Q psy15223 832 INMDKIPKNEKKSLRESAITAI-----NKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLE 906 (2492)
Q Consensus 832 i~~~~~~~~~~~~~~~~~~~~i-----~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~ 906 (2492)
|+++. +++++++++ ++|+|+|++.++++.+||++++||||||||+||||||+|||..++..
T Consensus 473 i~~~~--------l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~------ 538 (1066)
T PLN02381 473 VNCSS--------MAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQ------ 538 (1066)
T ss_pred EEchH--------HHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhh------
Confidence 99998 999999998 78999999999999999999999999999999999999998622110
Q ss_pred HHHHHHHHHhhcCC--cccccc-CchhhcCC------C-ccCceecCCccccccccccccchhcccCc---cccCCcCee
Q psy15223 907 LIELIAKKIELNGI--EIWQNL-DIKEFLGD------D-AVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPAD 973 (2492)
Q Consensus 907 ~i~~~~~~~~~~g~--~~w~~~-~~~~~~~~------~-~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~D 973 (2492)
+...|+ +.|+.. +..+.++. + ...+++++||||||||||++|+++++++. +++++||+|
T Consensus 539 --------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~P~d 610 (1066)
T PLN02381 539 --------LKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTS 610 (1066)
T ss_pred --------cccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccCCCe
Confidence 112232 456532 22222221 1 12489999999999999999999988643 236799999
Q ss_pred eeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhh-------------------
Q psy15223 974 LYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN------------------- 1034 (2492)
Q Consensus 974 l~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~------------------- 1034 (2492)
++++|+||+||||+++++.++++++.+||++|++||||+|.+|+|||||+||||+|.++|+
T Consensus 611 ~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~ 690 (1066)
T PLN02381 611 VLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPK 690 (1066)
T ss_pred eeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------hcChhhHHHHhhcc-CcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCcccccc
Q psy15223 1035 ------------------LFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSD-FNPNINIIKI 1094 (2492)
Q Consensus 1035 ------------------~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~-~~~~~~~~~~ 1094 (2492)
+||||+||||+++. ..++|++|+.+.+....++++||||++||+++++.+ |++.. .++.
T Consensus 691 e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~-~~~~ 769 (1066)
T PLN02381 691 ELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPA-TLSV 769 (1066)
T ss_pred hhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCccc-ccCc
Confidence 79999999999975 467899999999998889999999999999988763 44321 1223
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccC-ChHHHHHHHHHHHHHHH
Q psy15223 1095 SDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK-NSHARRSAQTSIWHINQ 1173 (2492)
Q Consensus 1095 ~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~-~~~~r~sa~~~L~~il~ 1173 (2492)
..+..+|+|++++|+.++++++++|++|+|+.|++.+++|++.+|||+||+.+|+|+|++.. ++..|++++++|+.++.
T Consensus 770 ~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~ 849 (1066)
T PLN02381 770 ETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLD 849 (1066)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHH
Confidence 44667999999999999999999999999999999999999999999999999999997643 34567889999999999
Q ss_pred HHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCC
Q psy15223 1174 SLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTG-IIG 1252 (2492)
Q Consensus 1174 ~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k-~i~ 1252 (2492)
.+++||+|||||+|||||+.|+... .....+||+++.||+.++.+.+..+++.++.+.++. ..++.+|++. .+.
T Consensus 850 ~llrLL~PfmPfitEELw~~L~~~~-~~~~~~SI~~~~~P~~~~~~~d~~le~~~~~l~~ii----~~iR~lR~~~~~i~ 924 (1066)
T PLN02381 850 TGLRLLHPFMPFVTEELWQRLPQPK-DHTRKDSIMISEYPSAVEAWTNEKVEYEMDLVLSTV----KCLRSLRAEVLEKQ 924 (1066)
T ss_pred HHHHHHHhHhHHHHHHHHHHhhhhc-cCCCCCeeEeCCCCCCCchhCCHHHHHHHHHHHHHH----HHHHHHHHHccccc
Confidence 9999999999999999999997420 001236999999999876666777777787777544 4555678877 555
Q ss_pred CCcceEEEEE-eCchhHHHHHHhHHHHHHhhhccceEEe
Q psy15223 1253 SSLQAEIILK-INKLDFEILNEFGEELKFFLLTSSVSLF 1290 (2492)
Q Consensus 1253 ~s~~a~v~i~-~~~~~~~~l~~~~~~L~~l~~vs~v~i~ 1290 (2492)
......+.+. .+.+..+.++.+...|..+.++++|++.
T Consensus 925 ~k~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~v~~~ 963 (1066)
T PLN02381 925 KNERLPAFALCRNQEIAAIIKSHQLEILTLANLSSLKVL 963 (1066)
T ss_pred cCcCCcEEEEcCCHHHHHHHHHHHHHHHHhhCCCeeeee
Confidence 4444334333 3445567788888889999998877763
No 24
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.4e-145 Score=1503.49 Aligned_cols=760 Identities=25% Similarity=0.420 Sum_probs=684.9
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
.+++.++|++||++|+++++|++.. + .+++|+|++||||+||.||||||+|++++|+++||+||+||+|+|+|||||
T Consensus 8 ~y~~~~~E~~~~~~W~~~~~f~~~~--~-~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 84 (874)
T PRK05729 8 TYDPKEVEAKWYQKWEEKGYFKPDD--N-SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDH 84 (874)
T ss_pred CCCHHHHHHHHHHHHHHCCCcccCc--C-CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCc
Confidence 5788899999999999999998743 2 345699999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhc---c---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHh
Q psy15223 1649 HGMPIEIQIEKLYG---K---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFK 1722 (2492)
Q Consensus 1649 hGlPie~~a~k~~~---~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~ 1722 (2492)
||+|+|.++++.++ . .+++++|++.|++|+.++++.|++||++||+|+||+|+|+||||.|.++|+|+|.+||+
T Consensus 85 ~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~ 164 (874)
T PRK05729 85 AGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYE 164 (874)
T ss_pred cchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999998763 2 57889999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEE
Q psy15223 1723 KGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQAL 1802 (2492)
Q Consensus 1723 kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai 1802 (2492)
+|||||+.+||+|||.|+|+|||+||+|++..++++|++|++.+ .+.+++|||||||||+||+||
T Consensus 165 ~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~~~~~~i~f~~~~---------------~~~~l~vaTtrPeTl~~~~av 229 (874)
T PRK05729 165 KGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKGKLWHIRYPLAD---------------GSDYLVVATTRPETMLGDTAV 229 (874)
T ss_pred CCCEeecCcccccCCCCCCcchhhhcccccccceEEEEEEEecC---------------CCcEEEEEeCCcchhhcCeeE
Confidence 99999999999999999999999999999999999999999854 246999999999999999999
Q ss_pred EEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCcccc
Q psy15223 1803 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITV 1882 (2492)
Q Consensus 1803 ~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~ 1882 (2492)
||||+++ +|. +|+|++|.||++ ++++|||+++||++
T Consensus 230 aV~P~d~--------------------------ry~------------~l~g~~~~~P~~------~~~ipii~~~~V~~ 265 (874)
T PRK05729 230 AVNPEDE--------------------------RYK------------HLIGKTVILPLV------GREIPIIADEYVDP 265 (874)
T ss_pred eECCCcc--------------------------HHH------------HhcCCEEECCCC------CCeeeEecCccCCC
Confidence 9999952 222 689999999999 89999999999999
Q ss_pred CCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccc
Q psy15223 1883 DSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSY 1962 (2492)
Q Consensus 1883 ~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~ 1962 (2492)
++|||+||++||||++||+++++|+| ++++++|++|+|+++++.|+|+++++||+.|++.|++.|.+++.++++|+|
T Consensus 266 ~~GTG~V~~~Pah~~~D~~~~~~~~l---~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~ 342 (874)
T PRK05729 266 EFGTGAVKITPAHDPNDFEVGKRHNL---PMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSV 342 (874)
T ss_pred CCCCcceEecCCCCHHHHHHHHHcCC---CcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccC
Confidence 99999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhh--cceEecccchhHHHHhhhCCCCcccccccCCCceee
Q psy15223 1963 MHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIA 2040 (2492)
Q Consensus 1963 p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~--~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP 2040 (2492)
|+|||||+||++++++|||+++++ ++++++++++ +++|+|+..++++.+||++++||||||||+||||||
T Consensus 343 p~~~R~~~~i~~~~~~QWFi~~~~--------~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP 414 (874)
T PRK05729 343 GHSDRSGVVIEPYLSDQWFVKMKP--------LAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIP 414 (874)
T ss_pred CeeCCCCceEEEEecCcceEehHH--------HHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCccc
Confidence 999999999999999999999998 9999999995 699999999999999999999999999999999999
Q ss_pred EEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCCCccCceecccccccccccCcchhhhccCCc---ccc
Q psy15223 2041 FFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQ 2117 (2492)
Q Consensus 2041 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~ 2117 (2492)
+|+|.+ +.+.+ |.+.+. . .....+++++||||||||||++|+++++... +++
T Consensus 415 ~~~~~~-~~~~v--------------------~~~~~~--~--~~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~ 469 (874)
T PRK05729 415 AWYDED-GEVYV--------------------GREEPE--A--REKALLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLK 469 (874)
T ss_pred EEEeCC-CcEEe--------------------CCcccc--c--ccccCeEeCCceecceecCCccHHHHhCCCCCcHHHH
Confidence 999976 33321 111110 0 0112489999999999999999999986532 235
Q ss_pred CCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2118 LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2118 ~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
.+||+|++++|+||+|+|+.++++.+..+.++.||++|++||+|+|.+|+|||||+||+|+|.++|++||+|+||||+++
T Consensus 470 ~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~ 549 (874)
T PRK05729 470 RFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAA 549 (874)
T ss_pred hcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHH
Q psy15223 2198 T-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHM 2276 (2492)
Q Consensus 2198 ~-~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~ 2276 (2492)
. +.++|++|+++.+....+++++|||+.||+++++.++.+.. ......+...|+|++++++++++.+.++|++|+|+.
T Consensus 550 ~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~-~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~ 628 (874)
T PRK05729 550 LASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGE-LPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDE 628 (874)
T ss_pred CCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCccc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 4 78999999999999999999999999999988765543221 111234578899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCC
Q psy15223 2277 IVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGET 2356 (2492)
Q Consensus 2277 a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~s 2356 (2492)
|++.+++|+++++||+||+.+|+++| . . .+++++.+++++++.+++||+|||||+|||||+.|+.. ...+|
T Consensus 629 a~~~l~~f~~~~~~~~Yle~~k~~l~-~---~-~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~~----~~~~s 699 (874)
T PRK05729 629 AARALYEFIWNEFCDWYLELAKPVLQ-E---A-AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAPL----GIEES 699 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-h---h-HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhcccC----CCCCc
Confidence 99999999999999999999999988 2 1 26789999999999999999999999999999999753 12358
Q ss_pred eeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEe-ChhhHHHHHHhHHHHHHhhhcc
Q psy15223 2357 IFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKI-NKLDFEILNEFGEELKFFLLTS 2435 (2492)
Q Consensus 2357 V~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~-~~~~~~~l~~~~~~L~~l~~vs 2435 (2492)
|+.++||+.++.+ ++++++.|+.++ .+.+.+|++|++++|+.+.+..+.+.. +....+.++.+.+.|+.+++++
T Consensus 700 i~~~~~P~~~~~~-~~~~~~~~~~~~----~ii~~ir~~r~~~~i~~~~~~~~~i~~~~~~~~~~l~~~~~~i~~l~~~~ 774 (874)
T PRK05729 700 IMLAPWPEADEAI-DEAAEAEFEWLK----ELITAIRNIRAEMNIPPSKKLPLLLKGADAEDRARLEANEAYIKRLARLE 774 (874)
T ss_pred eeecCCCCCCccc-CHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCeeeEEEEeCCHHHHHHHHHHHHHHHHHhCcC
Confidence 9999999987766 777777777665 488899999999999998888777754 4455677888889999999999
Q ss_pred cEEEee
Q psy15223 2436 SVSLFQ 2441 (2492)
Q Consensus 2436 ~v~i~~ 2441 (2492)
+|++..
T Consensus 775 ~v~~~~ 780 (874)
T PRK05729 775 SLEILA 780 (874)
T ss_pred ceEEec
Confidence 999865
No 25
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.4e-144 Score=1493.85 Aligned_cols=767 Identities=22% Similarity=0.376 Sum_probs=671.5
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
.+++.+ |++||++|+++++|++.. +.++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|+|||||
T Consensus 60 ~y~~~~-E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 136 (958)
T PLN02943 60 SFDFTS-EERIYNWWESQGYFKPNF--DRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDH 136 (958)
T ss_pred CCChhh-hHHHHHHHHHCCCcccCc--ccCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCc
Confidence 367777 999999999999998743 24678899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHh---cc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHh
Q psy15223 1649 HGMPIEIQIEKLY---GK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFK 1722 (2492)
Q Consensus 1649 hGlPie~~a~k~~---~~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~ 1722 (2492)
||||+|.+++|.+ |. .+++++|+++|++|+.++++.|++||++||+|+||+|+|+||||.|+++++|+|.+||+
T Consensus 137 ~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~ 216 (958)
T PLN02943 137 AGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHE 216 (958)
T ss_pred ccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999987 32 57889999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEE
Q psy15223 1723 KGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQAL 1802 (2492)
Q Consensus 1723 kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai 1802 (2492)
+|||||+.+||+|||.|+|+|||+||+|++..++++||+|++.+. .+.+++||||||||||||+||
T Consensus 217 ~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~~~~~~i~f~l~~~--------------~~~~l~vaTTrPeTl~~~~av 282 (958)
T PLN02943 217 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGG--------------SEDFLTIATTRPETLFGDVAI 282 (958)
T ss_pred CCCEEecCceeccCCCCCCCcCHHHhhcccccccEEEEEEEEcCC--------------CCCEEEEEeCChhhhhcceEE
Confidence 999999999999999999999999999999999999999998542 235899999999999999999
Q ss_pred EEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCcccc
Q psy15223 1803 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITV 1882 (2492)
Q Consensus 1803 ~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~ 1882 (2492)
||||+++ +|. .|+|++|.||++. ++++||++++||++
T Consensus 283 avnP~d~--------------------------ry~------------~l~g~~~~~Pl~~-----~~~ipii~~~~V~~ 319 (958)
T PLN02943 283 AVNPEDD--------------------------RYS------------KYIGKMAIVPMTY-----GRHVPIIADRYVDK 319 (958)
T ss_pred EECCCCH--------------------------HHH------------HHcCCEEECCCcC-----CCeeeEEecCcccC
Confidence 9999964 222 4679999999942 78999999999999
Q ss_pred CCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccc
Q psy15223 1883 DSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSY 1962 (2492)
Q Consensus 1883 ~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~ 1962 (2492)
++|||+||++||||++||+++++||| ++++++|++|+|++. .|+.+++||+.|++.|+++|+|++.++++|+|
T Consensus 320 ~~GTG~V~~~Pahd~~D~~~~~~~~L---~~~~~id~~G~~~~~----~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~ 392 (958)
T PLN02943 320 DFGTGVLKISPGHDHNDYLLARKLGL---PILNVMNKDGTLNEV----AGLYWFEAREKLWSDLEETGLAVKKEPHTLRV 392 (958)
T ss_pred CCCCceEEeCCCCChHHHHHHHHcCC---CceeeeCCCceeecc----CCccHHHHHHHHHHHHHHCCCeeeeeeeecCC
Confidence 99999999999999999999999999 999999999999875 46669999999999999999999999999999
Q ss_pred ccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhh--cceEecccchhHHHHhhhCCCCcccccccCCCceee
Q psy15223 1963 MHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIA 2040 (2492)
Q Consensus 1963 p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~--~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP 2040 (2492)
|+|||||+||++++++|||+++++ ++++++++++ +++|+|++.++++.+||++++||||||||+||||||
T Consensus 393 p~c~R~~~~Ie~~~~~QWFi~~~~--------l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP 464 (958)
T PLN02943 393 PRSQRGGEVIEPLVSKQWFVTMEP--------LAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIP 464 (958)
T ss_pred CeeCCCCcEeEEEeccceeEEHHH--------HHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccC
Confidence 999999999999999999999998 9999999996 599999999999999999999999999999999999
Q ss_pred EEEE--CCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCCCccCceecccccccccccCcchhhhccCCc----
Q psy15223 2041 FFIH--KKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---- 2114 (2492)
Q Consensus 2041 ~~~~--~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---- 2114 (2492)
+|+| .+|+..........+.+....+..| ....+.+++||||||||||++|++.++...
T Consensus 465 ~w~~~~~~~~~~~~v~~~~~~~~~~~~~~~g---------------~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~ 529 (958)
T PLN02943 465 VWYIVGKDCEEDYIVARSAEEALEKAREKYG---------------KDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAE 529 (958)
T ss_pred ceeccccCCCceEEecCcHHHHHHHhhhhcC---------------CchheeecCceEEEEEcCccchHHhcCCCccChH
Confidence 9997 4665411111111111111111111 112478999999999999999999986532
Q ss_pred cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHH
Q psy15223 2115 KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLW 2194 (2492)
Q Consensus 2115 ~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~ 2194 (2492)
+++++||+|++++|+||+|+||.+|++.+..+.++.||+++++||+++|.+|+|||||+||+|+|.+++++||+|++|||
T Consensus 530 ~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~ 609 (958)
T PLN02943 530 DFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFT 609 (958)
T ss_pred HHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCC--------------CCCcccccccccchHHHHHHHHHHH
Q psy15223 2195 VASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDF--------------NPNINIIKISDMVEIDKYAIINITN 2260 (2492)
Q Consensus 2195 l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~--------------~~~~~~~~~~~~~~~D~~il~~l~~ 2260 (2492)
++++++++|++|+++.+....+.+++|||+.+|+++++.+. ++. .+...+...|+||++++++
T Consensus 610 l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~D~wilskl~~ 686 (958)
T PLN02943 610 LALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKE---ESLLSLPLPECWVVSKLHE 686 (958)
T ss_pred HHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCcc---ccccccCHHHHHHHHHHHH
Confidence 99877899999999999999999999999999998876431 111 0112456889999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q psy15223 2261 LQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEA 2340 (2492)
Q Consensus 2261 ~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEel 2340 (2492)
++++++++|++|+|+.|++.+++|+++++||+|++.+|+++|+... ...+.+++++++++++.+++||+|||||+||||
T Consensus 687 ~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~-~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEEL 765 (958)
T PLN02943 687 LIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGD-NSALSRAQAVLLYVFENILKLLHPFMPFVTEEL 765 (958)
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCc-hHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHH
Confidence 9999999999999999999999999899999999999999997533 234678999999999999999999999999999
Q ss_pred HHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeChhhHHH
Q psy15223 2341 WSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEI 2420 (2492)
Q Consensus 2341 w~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~~~~~~ 2420 (2492)
|+.|++. .+||+.+.||+.. ...+.++++.++.++ ++.+.+|++|++.++.++....+.+....+..+.
T Consensus 766 wq~L~~~------~~si~~~~wP~~~-~~~d~~~~~~~~~v~----~ii~~iR~~r~~~~i~~~~~~~~~i~~~~~~~~~ 834 (958)
T PLN02943 766 WQALPYR------KEALIVSPWPQTS-LPKDLKSIKRFENLQ----SLTRAIRNARAEYSVEPAKRISASIVASAEVIEY 834 (958)
T ss_pred HHHcCCC------CCceeecCCCCCc-ccCCHHHHHHHHHHH----HHHHHHHHHHHHcCCCCCCcccEEEecChhHHHH
Confidence 9999753 3589999999975 344555666666654 5778899999999998777766666554444566
Q ss_pred HHHhHHHHHHhhhcc--cEEEe
Q psy15223 2421 LNEFGEELKFFLLTS--SVSLF 2440 (2492)
Q Consensus 2421 l~~~~~~L~~l~~vs--~v~i~ 2440 (2492)
+....+.|+.|.+++ ++++.
T Consensus 835 ~~~~~~~i~~l~~~~~~~~~~~ 856 (958)
T PLN02943 835 ISKEKEVLALLSRLDLQNVHFT 856 (958)
T ss_pred HHHHHHHHHHHhcCcccccccc
Confidence 777778888888764 67664
No 26
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.9e-144 Score=1496.70 Aligned_cols=771 Identities=22% Similarity=0.368 Sum_probs=679.5
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
++++.++|++||++|+++++|++.. .+.++++|+|++||||+||.|||||++|++++||++||+||+||+|+|+|||||
T Consensus 18 ~y~~~~iE~~~~~~W~~~~~f~~~~-~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~ 96 (1052)
T PRK14900 18 GYEHREVEARWYPFWQERGYFHGDE-HDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDH 96 (1052)
T ss_pred CCCHHHHHHHHHHHHHHCCCccCCc-ccCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCc
Confidence 4788899999999999999998742 245678999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHH
Q psy15223 1649 HGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIF 1721 (2492)
Q Consensus 1649 hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~ 1721 (2492)
||||+|.++++.++. ++++++|++.|++|+.++++.|++||++||+|+||+++|+|+||+|.++++|+|.+||
T Consensus 97 ~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~ 176 (1052)
T PRK14900 97 AGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLH 176 (1052)
T ss_pred cchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHH
Confidence 999999999987632 6789999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEeCcccccCCCCCccccccccccee-eecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhcccc
Q psy15223 1722 KKGYVYHGLKPVNWCFDCKSALAEAEIEYKK-KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQ 1800 (2492)
Q Consensus 1722 ~kGliyr~~~~v~wcp~~~t~Lad~Evey~~-~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ 1800 (2492)
++|||||+.+||+|||.|+|+|||+||+|++ ..+..+||+|++.+. +.+++||||||||||||+
T Consensus 177 ~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l~~~---------------~~~l~vaTTrPeTl~~~~ 241 (1052)
T PRK14900 177 EEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQGELWSFAYPLADG---------------SGEIVVATTRPETMLGDT 241 (1052)
T ss_pred HCCCEEeccceeccCCCCCCCccHHHhcccCCCCCeEEEEEEEecCC---------------CcEEEEEECchhhhhcce
Confidence 9999999999999999999999999999998 567778999998542 358999999999999999
Q ss_pred EEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEec-Cc
Q psy15223 1801 ALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLG-DY 1879 (2492)
Q Consensus 1801 ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~-~~ 1879 (2492)
||||||+++ +|. +|+|++|.||++ ++.+|||.+ +|
T Consensus 242 avaV~P~~~--------------------------~y~------------~L~G~~~~~Pl~------~~~ipIi~d~~~ 277 (1052)
T PRK14900 242 AVAVHPLDP--------------------------RYM------------ALHGKKVRHPIT------GRTFPIVADAIL 277 (1052)
T ss_pred eEEECCCcH--------------------------HHH------------HhcCCEEECCCC------CCeeEEEecccc
Confidence 999999953 222 689999999998 899999965 48
Q ss_pred cccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeec
Q psy15223 1880 ITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFE 1959 (2492)
Q Consensus 1880 V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~ 1959 (2492)
|++++|||+||++||||++||+++++|+| ++++++|++|+|+++++.|.|+++++||+.|++.|++.|++++.+.|+
T Consensus 278 vd~~~GTG~V~~~Pahd~~D~~~~~~~~L---~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~ 354 (1052)
T PRK14900 278 VDPKFGTGAVKVTPAHDFNDFEVGKRHGL---EMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHV 354 (1052)
T ss_pred cCcCCCCCeEEecCCCChhHHHHHHHcCC---CccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeee
Confidence 99999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhc--ceEecccchhHHHHhhhCCCCcccccccCCCc
Q psy15223 1960 HSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINK--IKFFPSWGKDRLKSMILNRPDWTISRQRHWGV 2037 (2492)
Q Consensus 1960 h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~--v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~ 2037 (2492)
|+||||||||+||++++++||||++++ +++++++++++ ++|+|++.++++.+||++++||||||||+|||
T Consensus 355 h~~~~c~R~~~~ie~~~s~qWFi~l~~--------~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~ 426 (1052)
T PRK14900 355 LPLGRCQRSATILEPLLSDQWYVRIEP--------LARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGH 426 (1052)
T ss_pred ccCceeCCCCceEEEEeccceeeehHH--------HHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCc
Confidence 999999999999999999999999998 99999999964 99999999999999999999999999999999
Q ss_pred eeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcC-CCccCceecccccccccccCcchhhhccCCc--
Q psy15223 2038 PIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLG-DDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-- 2114 (2492)
Q Consensus 2038 pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~-~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~-- 2114 (2492)
|||+|+|+++..+. ... . ...++ +....+.+++||||||||||++|++.++...
T Consensus 427 PIP~w~~~~~~~~v-~~~-~---------------------~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~ 483 (1052)
T PRK14900 427 QIPAWYCPDGHVTV-ARE-T---------------------PEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQT 483 (1052)
T ss_pred eeCeEEcCCCcEEe-ccc-c---------------------cccccccCccceecCCceEEEEEcCChHHHHHHcCCCch
Confidence 99999997643221 110 0 00011 1233588999999999999999998886432
Q ss_pred -cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHH
Q psy15223 2115 -KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 2193 (2492)
Q Consensus 2115 -~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~ 2193 (2492)
+++.|||+|+|++|+||+++||.++++.++.+.+..||++|++|||++|.+|+|||||+||+|+|.++|++||+|+|||
T Consensus 484 ~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~ 563 (1052)
T PRK14900 484 DTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRF 563 (1052)
T ss_pred HHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHH
Confidence 2356899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc-cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy15223 2194 WVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMY 2272 (2492)
Q Consensus 2194 ~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~ 2272 (2492)
||++ ++.++|++|+++.++...+++++|||+.||+++++.+|.+....+....+...|+||+++++.++++++++|++|
T Consensus 564 ~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~y 643 (1052)
T PRK14900 564 TLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQERGEDPARLARTPADRWILARLQRAVNETVEALEAF 643 (1052)
T ss_pred HHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9996 578999999999998888999999999999988776664432222223456789999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCcccc
Q psy15223 2273 EFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIE 2352 (2492)
Q Consensus 2273 ~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~ 2352 (2492)
+|++|++.+++|+++++||+||+..|+++|.. +...+.+++.+|+++++.+++||+|||||+|||||+.|+.......
T Consensus 644 ~f~~A~~~i~~f~~~~~~n~Yie~~k~~l~~~--~~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~~~~~ 721 (1052)
T PRK14900 644 RFNDAANAVYAFVWHELCDWYIELAKEALASE--DPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASA 721 (1052)
T ss_pred CHHHHHHHHHHHHHHhhhHHHHHhccHhhccC--CHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccCC
Confidence 99999999999999999999999999999874 3445667899999999999999999999999999999975200001
Q ss_pred CCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcee----EEEEEe-ChhhHHHHHH-hHH
Q psy15223 2353 SGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQA----EIILKI-NKLDFEILNE-FGE 2426 (2492)
Q Consensus 2353 ~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~----~v~i~~-~~~~~~~l~~-~~~ 2426 (2492)
..+||+++.||+.++ .++.+++.++.++ .+...+|++|++.+|+.+... .+.|.. +.+..+.++. +.+
T Consensus 722 ~~~SV~~~~wP~~~~--~d~~~e~~~~~v~----~ii~~iR~~R~~~~i~~~~~l~~~~~~~v~~~~~~~~~~l~~~~~~ 795 (1052)
T PRK14900 722 WADSVLAAEYPRKGE--ADEAAEAAFRPVL----GIIDAVRNIRGEMGIPWKVKLGAQAPVEIAVADPALRDLLQAGELA 795 (1052)
T ss_pred CCCceeecCCCCCCc--ccHHHHHHHHHHH----HHHHHHHHHHHHcCCCCCCccCCCCeEEEEcCCHHHHHHHHHHHHH
Confidence 136999999999765 4555666665554 577889999999999876654 455533 4455566777 788
Q ss_pred HHHHhhhcccEEEee
Q psy15223 2427 ELKFFLLTSSVSLFQ 2441 (2492)
Q Consensus 2427 ~L~~l~~vs~v~i~~ 2441 (2492)
.|..++++++|++..
T Consensus 796 ~i~~l~~~~~v~~~~ 810 (1052)
T PRK14900 796 RVHRVAGVEGSRLVV 810 (1052)
T ss_pred HHHHhhCCCeeEeec
Confidence 899999999999864
No 27
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=1.2e-143 Score=1505.14 Aligned_cols=764 Identities=24% Similarity=0.365 Sum_probs=664.2
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc-------CCCHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPI 518 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~-------~~~~~ 518 (2492)
+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||||||+|.++|+.++. +++++
T Consensus 56 ~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e 135 (995)
T PTZ00419 56 LNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGRE 135 (995)
T ss_pred cCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHH
Confidence 45678999999999999999999999999999999999999999999999999999999999987631 57899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccc
Q psy15223 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI 598 (2492)
Q Consensus 519 e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Ev 598 (2492)
+|+++|++|+.++++.|++||++||+++||+++|+||||.|++.++++|.+|+++|||||+.+||+|||.|+|||||+||
T Consensus 136 ~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EV 215 (995)
T PTZ00419 136 EFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEV 215 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeccEEEEEeecCCch---hh--hhhhccCCCCCCC-eEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCce
Q psy15223 599 EYKKKYDFSIYVGFSFSEPE---KI--KSIFNLKNLPSGK-GYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLL 672 (2492)
Q Consensus 599 ey~~~~~~s~yv~f~~~~~~---~~--~~~~~~~~~~~~~-~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~ 672 (2492)
+|+++.++++ ++|+..... +. .-+|.+. +.+ .+++||||||||||||+||||||+++
T Consensus 216 e~~~~~~~~~-~~~~~~~~~~~~g~l~~i~f~l~---~~~~~~l~vaTTrPeTl~g~~avav~P~d~------------- 278 (995)
T PTZ00419 216 EFEEIEKPTK-ITIPGYDKKVEVGVLWHFAYPLE---DSGQEEIVVATTRIETMLGDVAVAVHPKDE------------- 278 (995)
T ss_pred ccccccccce-eeccccccccccceeEEEEEeec---CCCCcEEEEEeCCcchhhhCeEEEECCCCc-------------
Confidence 9999998876 555443211 00 0001111 122 39999999999999999999999964
Q ss_pred eeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCC-cccccCCCceecEEecC-CcccCCCCccEEecCCCCHHHH
Q psy15223 673 LILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPL-SNIDINYNRLSPIYLGD-YITVDSGTGIVHSAPAYGIEDF 750 (2492)
Q Consensus 673 ~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~-~~~~~~~~~~~pii~~~-~V~~~~GTG~Vh~aPahg~~D~ 750 (2492)
+| ++|+|++|.||+ . ++.+|||+++ ||++++|||+||+|||||++||
T Consensus 279 -------------~y------------~~l~G~~~~~Pl~~------~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~ 327 (995)
T PTZ00419 279 -------------RY------------KKLHGKELIHPFIP------DRKIPIIADDELVDMEFGTGAVKITPAHDPNDY 327 (995)
T ss_pred -------------HH------------HHhcCCEEECCccC------CCEEEEEeCCcccCCCcCCCCeEeCCCCChHHH
Confidence 12 468999999999 6 8899999999 9999999999999999999999
Q ss_pred HHHHHcCCCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccc
Q psy15223 751 LIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQW 830 (2492)
Q Consensus 751 ~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QW 830 (2492)
+++++||| ++++++|++|+|++++|.|.|+++++||+.|++.|++.|.|++.+.+.|+||||||||+||++++++||
T Consensus 328 ~~~~~~~L---~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QW 404 (995)
T PTZ00419 328 EIAKRHNL---PFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQW 404 (995)
T ss_pred HHHHHcCC---CeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCee
Confidence 99999999 888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcchhHHHHHHHHHHhh--cceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHH
Q psy15223 831 FINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELI 908 (2492)
Q Consensus 831 Fi~~~~~~~~~~~~~~~~~~~~i~--~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i 908 (2492)
||+|++ ++++++++++ +++|+|+..++++.+||++++||||||||+||||||+|||++||... .
T Consensus 405 Fi~~~~--------~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~-~----- 470 (995)
T PTZ00419 405 YVNCKD--------MAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPET-D----- 470 (995)
T ss_pred eEecHH--------HHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCccc-c-----
Confidence 999998 9999999997 79999999999999999999999999999999999999999998431 0
Q ss_pred HHHHHHHhhcCCcccccc-CchhhcC---------CCccCceecCCccccccccccccchhcccCc---cccCCcCeeee
Q psy15223 909 ELIAKKIELNGIEIWQNL-DIKEFLG---------DDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLY 975 (2492)
Q Consensus 909 ~~~~~~~~~~g~~~w~~~-~~~~~~~---------~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~Dl~ 975 (2492)
..+.+.|+-. +..+.++ .++..+++++||||||||||++|+++++++. +++++||+|++
T Consensus 471 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P~d~~ 542 (995)
T PTZ00419 471 --------PSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTSLL 542 (995)
T ss_pred --------CCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCCCcEE
Confidence 1122334321 1111111 1124689999999999999999999887643 23679999999
Q ss_pred ecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhh---------------------
Q psy15223 976 LEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN--------------------- 1034 (2492)
Q Consensus 976 ~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~--------------------- 1034 (2492)
++|+||+|+||+++++.+..+.+.+||++|++||+|+|.+|+|||||+||||+|.++|+
T Consensus 543 ~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~ 622 (995)
T PTZ00419 543 ETGSDILFFWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEI 622 (995)
T ss_pred EechhHHhHHHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------hcChhhHHHHhhc-cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccc-----c
Q psy15223 1035 ----------------LFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINI-----I 1092 (2492)
Q Consensus 1035 ----------------~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~-----~ 1092 (2492)
+||||+||||+++ ++..+|++|+.+.+....++++||||++||+++++.++.+.... .
T Consensus 623 ~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~ 702 (995)
T PTZ00419 623 KRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPN 702 (995)
T ss_pred hhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 8999999999996 56789999999999988899999999999999988765432111 1
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHH
Q psy15223 1093 KISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHIN 1172 (2492)
Q Consensus 1093 ~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il 1172 (2492)
+...+..+|+|+++++++++++++++|++|+|++|++.+++|++.++||+||+++|+|++. ..++.++++++++|+++|
T Consensus 703 ~~~~~~~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~-~~~~~~~~~~~~~L~~vL 781 (995)
T PTZ00419 703 NVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDVYLELIKPRLSK-QSDGERKQHAQDVLHTVL 781 (995)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhc-CCCcHHHHHHHHHHHHHH
Confidence 1234567899999999999999999999999999999999999999999999999999943 234566788999999999
Q ss_pred HHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy15223 1173 QSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIG 1252 (2492)
Q Consensus 1173 ~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~ 1252 (2492)
+.++++|+|||||+|||||+.|+.. ....+||+++.||..++.+.+.++++.|+.++++. ..++.+|++..|+
T Consensus 782 ~~~l~LL~PfmPfitEElw~~L~~~---~~~~~si~~~~~P~~~~~~~d~~~e~~~~~~~~ii----~~iR~~r~~~~i~ 854 (995)
T PTZ00419 782 DIGLRLLHPMMPFITEELYQRLPNY---LRKSESISIAKYPQPNPGWNNEALDEEMKIIMSIV----KSIRSLIATLGIP 854 (995)
T ss_pred HHHHHHHhhhhhhhHHHHHHhhhcc---CCCCCeeeccCCCCCCcccCCHHHHHHHHHHHHHH----HHHHHHHHHcCCC
Confidence 9999999999999999999999742 01246999999999776666777778888887554 4556788888888
Q ss_pred CCcceEEEEEe-CchhHHHHHHhHHHHHHhhhccceEEe
Q psy15223 1253 SSLQAEIILKI-NKLDFEILNEFGEELKFFLLTSSVSLF 1290 (2492)
Q Consensus 1253 ~s~~a~v~i~~-~~~~~~~l~~~~~~L~~l~~vs~v~i~ 1290 (2492)
......+.+.. +++..+.++.+.+.|..++++.+|++.
T Consensus 855 ~~~~l~~~i~~~~~~~~~~~~~~~~~i~~l~~~~~v~~~ 893 (995)
T PTZ00419 855 NKTKPDCYVTAKDAELIELIESAENLISTLAKIGSVSVI 893 (995)
T ss_pred CCCceeEEEEeCCHHHHHHHHHHHHHHHHhcCCCeeEEe
Confidence 76666655543 444567788888899999999888764
No 28
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=6.1e-143 Score=1487.17 Aligned_cols=771 Identities=27% Similarity=0.453 Sum_probs=691.6
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
.++++++|++||++|+++++|++.. +.++++|+|++||||+||.|||||++|++++|+++||+||+||+|+|+|||||
T Consensus 4 ~y~~~~iE~~~~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 81 (861)
T TIGR00422 4 DYDPHEVEKKWYKKWEKSGFFKPDG--NSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDH 81 (861)
T ss_pred CCCHHHHHHHHHHHHHHCCCcccCc--ccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCc
Confidence 4678899999999999999998743 34678899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHh
Q psy15223 1649 HGMPIEIQIEKLYGK------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFK 1722 (2492)
Q Consensus 1649 hGlPie~~a~k~~~~------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~ 1722 (2492)
||+|||.+|+|.++. ++++++|+++|++|+.++.+.+++||++||+|+||+|+|+||||.|.++|+|+|.+||+
T Consensus 82 ~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~ 161 (861)
T TIGR00422 82 AGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYE 161 (861)
T ss_pred CCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHH
Confidence 999999999998754 46889999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEE
Q psy15223 1723 KGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQAL 1802 (2492)
Q Consensus 1723 kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai 1802 (2492)
+||||++.++|+|||.|+|+|||+||+|++..++++|++|++.+. .+.+++|||||||||+||+||
T Consensus 162 ~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~~~~~~i~f~~~~~--------------~~~~l~vaTtrPeTl~~~~av 227 (861)
T TIGR00422 162 KGLIYRGEYLVNWDPKLNTAISDIEVEYKEVKGKLYYIRYPLANG--------------SKDYLVVATTRPETMFGDTAV 227 (861)
T ss_pred CCCeeecCcccccCCCCCCcchHhHhhcccccceEEEEEEEecCC--------------CCCEEEEEeCCcchhhhCeEE
Confidence 999999999999999999999999999999999999999998642 236999999999999999999
Q ss_pred EEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCcccc
Q psy15223 1803 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITV 1882 (2492)
Q Consensus 1803 ~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~ 1882 (2492)
||||+++ +|. +|+|++|.+|++ ++++||++++||++
T Consensus 228 ~V~P~~~--------------------------ry~------------~l~g~~~~~P~~------~~~ipii~~~~V~~ 263 (861)
T TIGR00422 228 AVHPEDE--------------------------RYK------------HLIGKKVILPLT------GRKIPIIADEYVDM 263 (861)
T ss_pred EECCCch--------------------------HHH------------HhcCCEEEcCCC------CCcceeeecCCCCc
Confidence 9999953 222 689999999999 88999999999999
Q ss_pred CCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccc
Q psy15223 1883 DSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSY 1962 (2492)
Q Consensus 1883 ~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~ 1962 (2492)
++|||+||++||||++||+++++||| ++++++|++|+|+++++.|+|+++++||+.|++.|+++|.+++.++++|+|
T Consensus 264 ~~GTG~V~~~Pah~~~D~~~~~~~~l---~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~ 340 (861)
T TIGR00422 264 EFGTGAVKVTPAHDFNDYEWGKRHNL---EFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNV 340 (861)
T ss_pred ccCCCceEecCCCChHHHHHHHHcCC---CccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccC
Confidence 99999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhh--cceEecccchhHHHHhhhCCCCcccccccCCCceee
Q psy15223 1963 MHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIA 2040 (2492)
Q Consensus 1963 p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~--~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP 2040 (2492)
|+|||||+||++++++|||+++++ ++++++++++ +++|+|++.++++.+||++++||||||||+||||||
T Consensus 341 p~~~R~g~~ve~~~~~qWFi~~~~--------~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP 412 (861)
T TIGR00422 341 GTCWRSGTVVEPLLSKQWFVKVEK--------LADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIP 412 (861)
T ss_pred CEeCCCCCEEEEEecCcceEecHH--------HHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcce
Confidence 999999999999999999999988 9999999997 699999999999999999999999999999999999
Q ss_pred EEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCCCccCceecccccccccccCcchhhhccCCc---ccc
Q psy15223 2041 FFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQ 2117 (2492)
Q Consensus 2041 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~ 2117 (2492)
+|+|++|+.+.+.... .+... .. ..+ ....+.+++||||||||||++|++.++... +++
T Consensus 413 ~w~~~~~~~~~v~~~~-~~~~~----~~------------~~~-~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~ 474 (861)
T TIGR00422 413 VWYCKECGEVYVAKEE-PLPDD----KT------------NTG-PSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLK 474 (861)
T ss_pred EEEECCCCcEEeccch-HHhhh----hh------------ccC-CcccEEECCCcccceeccchHHHHHhCCCCChHHHh
Confidence 9999988875432111 00000 00 001 124689999999999999999999887543 246
Q ss_pred CCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2118 LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2118 ~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
.+||+|++++|+||+|||+.++++.+.+++++.||++|++||+++|.+|+|||||+||+|+|.+++++||+|++|||+++
T Consensus 475 ~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~ 554 (861)
T TIGR00422 475 KFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLAS 554 (861)
T ss_pred hcCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHH
Q psy15223 2198 T-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHM 2276 (2492)
Q Consensus 2198 ~-~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~ 2276 (2492)
. +.++|++|+++.+....+++++|||+.||+..++..+.. . ..........|+||+++++.+++.++++|++|+|+.
T Consensus 555 ~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~-~-~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~ 632 (861)
T TIGR00422 555 LVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLE-L-SGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAE 632 (861)
T ss_pred CCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccccccc-c-ccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 5 569999999999999999999999999999877654411 0 011123567899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCC
Q psy15223 2277 IVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGET 2356 (2492)
Q Consensus 2277 a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~s 2356 (2492)
|++.+++|+++++||+|++.+|+|++... ...+.+++.+|+++++.+++||+|||||+|||||+.|+.. .+|
T Consensus 633 A~~~l~~f~~~~~~n~Yie~~k~~~~~~~--~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~------~~s 704 (861)
T TIGR00422 633 AAKALYEFIWNDFCDWYIELVKYRLYNGN--EAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG------ADS 704 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCccc------CCc
Confidence 99999999988999999999999998642 4567789999999999999999999999999999999753 369
Q ss_pred eeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEe-ChhhHHHHHHhHHHHHHhhhcc
Q psy15223 2357 IFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKI-NKLDFEILNEFGEELKFFLLTS 2435 (2492)
Q Consensus 2357 V~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~-~~~~~~~l~~~~~~L~~l~~vs 2435 (2492)
|++++||+.++.+.|+++++.++.++ .+...+|++|++.+|+.+....+.+.. +....+.++.+.+.|..+++++
T Consensus 705 i~~~~~P~~~~~~~d~~~e~~~~~l~----~ii~~iR~~r~~~~i~~~~~l~~~i~~~~~~~~~~l~~~~~~I~~l~~v~ 780 (861)
T TIGR00422 705 IMLQSYPVVDAEFVDEEAEKAFELLK----EIIVSIRNLKAESNIPPNAPLKVLLIYTEAETAERLKLNAVDIKGAINFS 780 (861)
T ss_pred eeecCCCCcccccCCHHHHHHHHHHH----HHHHHHHHHHHHcCCCCCCcceEEEEeCCHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999888777877877777665 577889999999999888776665543 4445577888889999999999
Q ss_pred cEEEeec
Q psy15223 2436 SVSLFQI 2442 (2492)
Q Consensus 2436 ~v~i~~~ 2442 (2492)
+|++...
T Consensus 781 ~v~~~~~ 787 (861)
T TIGR00422 781 EVEVVIE 787 (861)
T ss_pred ceEeecc
Confidence 9998654
No 29
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.6e-142 Score=1473.48 Aligned_cols=737 Identities=23% Similarity=0.379 Sum_probs=646.2
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhC---c---CCCHHHH
Q psy15223 447 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG---K---NLSPIEI 520 (2492)
Q Consensus 447 ~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~---~---~~~~~e~ 520 (2492)
.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||||||+|.+|+|.++ . .+++++|
T Consensus 85 ~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f 164 (958)
T PLN02943 85 RGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEF 164 (958)
T ss_pred cCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHH
Confidence 457789999999999999999999999999999999999999999999999999999999999873 2 5788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccc
Q psy15223 521 QNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEY 600 (2492)
Q Consensus 521 ~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey 600 (2492)
+++|++|++++++.|++||++||+++||+++|+||||.|+++++++|.+||++|||||+.+||+|||.|+|+||++||+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey 244 (958)
T PLN02943 165 TKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 244 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhH
Q psy15223 601 KKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLV 680 (2492)
Q Consensus 601 ~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~ 680 (2492)
+++.++++||+|++.+. .+.+++||||||||||||+||||||+++
T Consensus 245 ~e~~~~~~~i~f~l~~~--------------~~~~l~vaTTrPeTl~~~~avavnP~d~--------------------- 289 (958)
T PLN02943 245 SEEPGTLYYIKYRVAGG--------------SEDFLTIATTRPETLFGDVAIAVNPEDD--------------------- 289 (958)
T ss_pred ccccccEEEEEEEEcCC--------------CCCEEEEEeCChhhhhcceEEEECCCCH---------------------
Confidence 99999999999998642 1358999999999999999999999965
Q ss_pred HHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCC
Q psy15223 681 KSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKD 760 (2492)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~ 760 (2492)
+| ++|.|+++.||++. ++++|||+++||++++|||+||+|||||++||++|++|||
T Consensus 290 -----ry------------~~l~g~~~~~Pl~~-----~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L-- 345 (958)
T PLN02943 290 -----RY------------SKYIGKMAIVPMTY-----GRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGL-- 345 (958)
T ss_pred -----HH------------HHHcCCEEECCCcC-----CCeeeEEecCcccCCCCCceEEeCCCCChHHHHHHHHcCC--
Confidence 22 24679999999942 7899999999999999999999999999999999999999
Q ss_pred CCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcc
Q psy15223 761 SDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKN 840 (2492)
Q Consensus 761 ~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~ 840 (2492)
++++++|++|+|++. .|+.+++||+.|++.|++.|.|++.++++|+||+|||||+||++++++|||+++++
T Consensus 346 -~~~~~id~~G~~~~~----~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~---- 416 (958)
T PLN02943 346 -PILNVMNKDGTLNEV----AGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP---- 416 (958)
T ss_pred -CceeeeCCCceeecc----CCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHH----
Confidence 888999999999874 46679999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHhh--cceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEE--CCCCccccCcHHHHHHHHHHHh
Q psy15223 841 EKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIH--KKSGKLHPKTLELIELIAKKIE 916 (2492)
Q Consensus 841 ~~~~~~~~~~~~i~--~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~--~~~~~~~~~~~~~i~~~~~~~~ 916 (2492)
++++++++++ +++|+|+..++++.+||++++||||||||+||||||+||| .+||+.........+.+.....
T Consensus 417 ----l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~~~~~~ 492 (958)
T PLN02943 417 ----LAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEKARE 492 (958)
T ss_pred ----HHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHHHHhhh
Confidence 9999999996 5999999999999999999999999999999999999998 5677522111111122211111
Q ss_pred hcCCccccccCchhhcCCCccCceecCCccccccccccccchhcccCc----cccCCcCeeeeecccccchhhHHHHHHH
Q psy15223 917 LNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLIFPADLYLEGSDQHRGWFHSSLLT 992 (2492)
Q Consensus 917 ~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~----~~~~~~p~Dl~~~G~D~~rgwf~s~l~~ 992 (2492)
..|. ...+.+++||||||||||++|++.+++.. +++++||+|++++|+||+||||.++++.
T Consensus 493 ~~g~---------------~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~ 557 (958)
T PLN02943 493 KYGK---------------DVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMM 557 (958)
T ss_pred hcCC---------------chheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHh
Confidence 1111 12478899999999999999999987643 3368999999999999999999999999
Q ss_pred HHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcccccccCHHHHHHHHHHHHHHH
Q psy15223 993 SIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIR 1072 (2492)
Q Consensus 993 ~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~~d~~fs~~~l~~~~~~~~kl~ 1072 (2492)
+..+.+..||++|++||+++|.+|+|||||+||+|+|.+++++||+|++|||++++++++|++|+++.+....+++++|+
T Consensus 558 ~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~ 637 (958)
T PLN02943 558 GIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLW 637 (958)
T ss_pred hhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHhhcCCCC--------------CCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q psy15223 1073 NTLRFLLANTSDF--------------NPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSED 1138 (2492)
Q Consensus 1073 n~~rf~l~~l~~~--------------~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ 1138 (2492)
|+.||+++++.+. ++. .+...+...|+|++++++.+++++.++|++|+|+.|++.+++|++++
T Consensus 638 N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~ 714 (958)
T PLN02943 638 NAGKFVLQNLPSQSDTSAWEHILACKFDKE---ESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSD 714 (958)
T ss_pred HHHHHHHhccccccccccccccccccCCcc---ccccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Confidence 9999998876431 111 11124568899999999999999999999999999999999999999
Q ss_pred hhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCccc
Q psy15223 1139 LGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKV 1218 (2492)
Q Consensus 1139 ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~ 1218 (2492)
+||+|++.+|+|+|++..+ ..+++++++|+.+++.+++||+|||||+|||||+.|+.. .+||+++.||+.. .
T Consensus 715 ~~d~YiE~~Kprl~~~~~~-~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~~------~~si~~~~wP~~~-~ 786 (958)
T PLN02943 715 FADWYIEASKTRLYHSGDN-SALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPYR------KEALIVSPWPQTS-L 786 (958)
T ss_pred HHHHHHHhccHhhccCCch-HHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCCC------CCceeecCCCCCc-c
Confidence 9999999999999976432 447789999999999999999999999999999999753 3699999999865 3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCchhHHHHHHhHHHHHHhhhcc
Q psy15223 1219 YNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTS 1285 (2492)
Q Consensus 1219 ~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~~~~~~l~~~~~~L~~l~~vs 1285 (2492)
..+.++++.++.+.++ .+.++.+|++..+..+....+.+....+..+.+....+.|..+.+++
T Consensus 787 ~~d~~~~~~~~~v~~i----i~~iR~~r~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~i~~l~~~~ 849 (958)
T PLN02943 787 PKDLKSIKRFENLQSL----TRAIRNARAEYSVEPAKRISASIVASAEVIEYISKEKEVLALLSRLD 849 (958)
T ss_pred cCCHHHHHHHHHHHHH----HHHHHHHHHHcCCCCCCcccEEEecChhHHHHHHHHHHHHHHHhcCc
Confidence 3355566667777654 44556788888887766666666554444566677777788777643
No 30
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.9e-142 Score=1478.73 Aligned_cols=732 Identities=25% Similarity=0.412 Sum_probs=661.5
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc------CCCHHHHHH
Q psy15223 449 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK------NLSPIEIQN 522 (2492)
Q Consensus 449 ~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~------~~~~~e~~~ 522 (2492)
+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||||||+|.++++.++. .+++++|++
T Consensus 35 ~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~ 114 (874)
T PRK05729 35 KKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLE 114 (874)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999987632 578899999
Q ss_pred HHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccc
Q psy15223 523 KARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKK 602 (2492)
Q Consensus 523 ~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~ 602 (2492)
+|++|++++.+.|++||++||+++||+|+|+||||.|.++++++|.+||++|||||+.+||+|||.|+|+|||+||+|++
T Consensus 115 ~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~ 194 (874)
T PRK05729 115 KVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKE 194 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHH
Q psy15223 603 KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKS 682 (2492)
Q Consensus 603 ~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~ 682 (2492)
+.++++|++|++.+. +.+++|||||||||+||+||||||+++
T Consensus 195 ~~~~~~~i~f~~~~~---------------~~~l~vaTtrPeTl~~~~avaV~P~d~----------------------- 236 (874)
T PRK05729 195 VKGKLWHIRYPLADG---------------SDYLVVATTRPETMLGDTAVAVNPEDE----------------------- 236 (874)
T ss_pred ccceEEEEEEEecCC---------------CcEEEEEeCCcchhhcCeeEeECCCcc-----------------------
Confidence 999999999998642 468999999999999999999999953
Q ss_pred HHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCC
Q psy15223 683 CLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSD 762 (2492)
Q Consensus 683 ~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~ 762 (2492)
+| ++|+|++|.||+. ++++|||+++||++++|||+||++||||++||+++++||| +
T Consensus 237 ---ry------------~~l~g~~~~~P~~------~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l---~ 292 (874)
T PRK05729 237 ---RY------------KHLIGKTVILPLV------GREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNL---P 292 (874)
T ss_pred ---HH------------HHhcCCEEECCCC------CCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCC---C
Confidence 22 4789999999998 8999999999999999999999999999999999999999 8
Q ss_pred cccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchh
Q psy15223 763 IINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEK 842 (2492)
Q Consensus 763 ~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~ 842 (2492)
+++++|++|+|++++|.|+|+++++||+.|++.|++.|.+.+.+++.|+||||||||+||++++++|||+++++
T Consensus 293 ~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~------ 366 (874)
T PRK05729 293 MINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKP------ 366 (874)
T ss_pred cccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHH------
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhh--cceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCC
Q psy15223 843 KSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGI 920 (2492)
Q Consensus 843 ~~~~~~~~~~i~--~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~ 920 (2492)
++++++++++ +++|+|+..++++.+||++++||||||||+||||||+|||.+ |+..+
T Consensus 367 --~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~-~~~~v------------------ 425 (874)
T PRK05729 367 --LAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDED-GEVYV------------------ 425 (874)
T ss_pred --HHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCC-CcEEe------------------
Confidence 9999999995 699999999999999999999999999999999999999976 44331
Q ss_pred ccccccCchhhcCCCccCceecCCccccccccccccchhcccCc---cccCCcCeeeeecccccchhhHHHHHHHHHHhc
Q psy15223 921 EIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILN 997 (2492)
Q Consensus 921 ~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~ 997 (2492)
|.+.+. . .....+++++||||||||||++|++++++.. +++++||+|++++|+||+|+|+.++++.+..+.
T Consensus 426 --~~~~~~--~--~~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~ 499 (874)
T PRK05729 426 --GREEPE--A--REKALLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFT 499 (874)
T ss_pred --CCcccc--c--ccccCeEeCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHHHHHhc
Confidence 222110 0 0113589999999999999999999987643 236799999999999999999999999999999
Q ss_pred CCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc-CcccccccCHHHHHHHHHHHHHHHHHHH
Q psy15223 998 KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLR 1076 (2492)
Q Consensus 998 ~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~r 1076 (2492)
+..||++|++||+++|.+|+|||||+||+|+|.++|++||+|+||||+++. ++++|++|+++.++...+++++|||+.|
T Consensus 500 ~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~R 579 (874)
T PRK05729 500 GQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASR 579 (874)
T ss_pred CCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 7889999999999999999999999999
Q ss_pred HHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccC
Q psy15223 1077 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK 1156 (2492)
Q Consensus 1077 f~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~ 1156 (2492)
|++.++.++.+.. ......+...|+|++++++++++++.++|++|+|+.|++.+++|+++++|++|++.+|+|+| +
T Consensus 580 f~~~~~~~~~~~~-~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~-~-- 655 (874)
T PRK05729 580 FVLMNLEGADVGE-LPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQ-E-- 655 (874)
T ss_pred HHHHhcccCCccc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h--
Confidence 9988766543321 11223457889999999999999999999999999999999999999999999999999998 2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHH
Q psy15223 1157 NSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRS 1236 (2492)
Q Consensus 1157 ~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~ 1236 (2492)
. .+++++.+|+++++.++++|+|||||+|||||+.|+.. ...+||+++.||+.++.+ +..+++.++.+++
T Consensus 656 -~-~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~~----~~~~si~~~~~P~~~~~~-~~~~~~~~~~~~~--- 725 (874)
T PRK05729 656 -A-AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAPL----GIEESIMLAPWPEADEAI-DEAAEAEFEWLKE--- 725 (874)
T ss_pred -h-HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhcccC----CCCCceeecCCCCCCccc-CHHHHHHHHHHHH---
Confidence 1 27789999999999999999999999999999999753 123589999999977655 6667777777764
Q ss_pred HHHHHHHHHHhhCCCCCCcceEEEEEe-CchhHHHHHHhHHHHHHhhhccceEEe
Q psy15223 1237 KVMQKLEKIRSTGIIGSSLQAEIILKI-NKLDFEILNEFGEELKFFLLTSSVSLF 1290 (2492)
Q Consensus 1237 ~v~~~le~~R~~k~i~~s~~a~v~i~~-~~~~~~~l~~~~~~L~~l~~vs~v~i~ 1290 (2492)
+...++.+|+++.|+.+.+..+.+.. +....+.++.+.+.|..++++++|++.
T Consensus 726 -ii~~ir~~r~~~~i~~~~~~~~~i~~~~~~~~~~l~~~~~~i~~l~~~~~v~~~ 779 (874)
T PRK05729 726 -LITAIRNIRAEMNIPPSKKLPLLLKGADAEDRARLEANEAYIKRLARLESLEIL 779 (874)
T ss_pred -HHHHHHHHHHhcCCCCCCeeeEEEEeCCHHHHHHHHHHHHHHHHHhCcCceEEe
Confidence 56677789999999988888877754 344567788888899999999998874
No 31
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.6e-142 Score=1474.86 Aligned_cols=744 Identities=22% Similarity=0.373 Sum_probs=654.9
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc-------CCCHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPI 518 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~-------~~~~~ 518 (2492)
+.++++|+|++||||+||.|||||++|++++||++||+||+||+|+|+|||||||||+|.++++.++. +++++
T Consensus 44 ~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e 123 (1052)
T PRK14900 44 DRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGRE 123 (1052)
T ss_pred cCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHH
Confidence 35678999999999999999999999999999999999999999999999999999999999987732 67899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccc
Q psy15223 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI 598 (2492)
Q Consensus 519 e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Ev 598 (2492)
+|++.|++|++++++.|++||++||+++||+++|+||||.|.++++|+|.+||++|||||+.+||+|||.|+|+|||+||
T Consensus 124 ~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev 203 (1052)
T PRK14900 124 AFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEV 203 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-eeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeH
Q psy15223 599 EYKK-KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAF 677 (2492)
Q Consensus 599 ey~~-~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~ 677 (2492)
+|++ +.+.++||+|++.+. +.+++||||||||||||+||||||+++
T Consensus 204 ~~~e~~~~~~~~i~f~l~~~---------------~~~l~vaTTrPeTl~~~~avaV~P~~~------------------ 250 (1052)
T PRK14900 204 EHEEAHQGELWSFAYPLADG---------------SGEIVVATTRPETMLGDTAVAVHPLDP------------------ 250 (1052)
T ss_pred cccCCCCCeEEEEEEEecCC---------------CcEEEEEECchhhhhcceeEEECCCcH------------------
Confidence 9998 777888999998542 358999999999999999999999964
Q ss_pred HhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEec-CCcccCCCCccEEecCCCCHHHHHHHHHc
Q psy15223 678 NLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLG-DYITVDSGTGIVHSAPAYGIEDFLIFKKQ 756 (2492)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~-~~V~~~~GTG~Vh~aPahg~~D~~~~~~~ 756 (2492)
+| ++|.|++|.|||. ++.+|||.+ +||++++|||+||++||||++||++|++|
T Consensus 251 --------~y------------~~L~G~~~~~Pl~------~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~ 304 (1052)
T PRK14900 251 --------RY------------MALHGKKVRHPIT------GRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRH 304 (1052)
T ss_pred --------HH------------HHhcCCEEECCCC------CCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHc
Confidence 22 3689999999998 889999964 48999999999999999999999999999
Q ss_pred CCCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCC
Q psy15223 757 NMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 836 (2492)
Q Consensus 757 ~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~ 836 (2492)
|| +++++||++|+|++++|.|.|+++++||+.|++.|++.|.+++.+.|.|+||||||||+||++++++||||++++
T Consensus 305 ~L---~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~ 381 (1052)
T PRK14900 305 GL---EMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEP 381 (1052)
T ss_pred CC---CccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHH
Confidence 99 888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcchhHHHHHHHHHHhhc--ceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHH
Q psy15223 837 IPKNEKKSLRESAITAINK--IKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKK 914 (2492)
Q Consensus 837 ~~~~~~~~~~~~~~~~i~~--v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~ 914 (2492)
+++++++++++ ++|+|+..++++.+||++++||||||||+||||||+|||++ |++.+...
T Consensus 382 --------~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~-~~~~v~~~--------- 443 (1052)
T PRK14900 382 --------LARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPD-GHVTVARE--------- 443 (1052)
T ss_pred --------HHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCC-CcEEeccc---------
Confidence 99999999965 99999999999999999999999999999999999999976 33321100
Q ss_pred HhhcCCccccccCchhhcC-CCccCceecCCccccccccccccchhcccCc---cccCCcCeeeeecccccchhhHHHHH
Q psy15223 915 IELNGIEIWQNLDIKEFLG-DDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSL 990 (2492)
Q Consensus 915 ~~~~g~~~w~~~~~~~~~~-~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~Dl~~~G~D~~rgwf~s~l 990 (2492)
. ...++ ++...+.+++||||||||||++|++.+++.. ++++|||+|+|++|+||+|+||.+++
T Consensus 444 -----------~--~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~a~~l 510 (1052)
T PRK14900 444 -----------T--PEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMM 510 (1052)
T ss_pred -----------c--cccccccCccceecCCceEEEEEcCChHHHHHHcCCCchHHHHhhCCchhhcccccHHhHHHHHHH
Confidence 0 00111 2234588999999999999999998887543 23679999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHHHH
Q psy15223 991 LTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYR 1069 (2492)
Q Consensus 991 ~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~ 1069 (2492)
+.++.+.+..||++|++|||++|.+|+|||||+||+|+|.++|++||+|+|||||++ ++.++|++|+++.++...++++
T Consensus 511 ~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~n 590 (1052)
T PRK14900 511 MMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFAN 590 (1052)
T ss_pred HHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 5788999999999988889999
Q ss_pred HHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhh
Q psy15223 1070 RIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKD 1149 (2492)
Q Consensus 1070 kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kd 1149 (2492)
+|||+.||++.++.+|.+....+....+...|+|++++++.+++++.++|++|+|++|++.+++|+++++||+||+..|+
T Consensus 591 kl~N~~R~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~ 670 (1052)
T PRK14900 591 KLWNASRFALMNLSGYQERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKE 670 (1052)
T ss_pred HHHHHHHHHHHhhhccCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhccH
Confidence 99999999988877775432222223456789999999999999999999999999999999999999999999999999
Q ss_pred hhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHH
Q psy15223 1150 RLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYM 1229 (2492)
Q Consensus 1150 rl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~ 1229 (2492)
++|++ +...+++++++|+++|+.++++|+|||||+|||||+.|+.........+||+++.||+.++ .+..+++.++
T Consensus 671 ~l~~~--~~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~~~~~~~~SV~~~~wP~~~~--~d~~~e~~~~ 746 (1052)
T PRK14900 671 ALASE--DPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASAWADSVLAAEYPRKGE--ADEAAEAAFR 746 (1052)
T ss_pred hhccC--CHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccCCCCCceeecCCCCCCc--ccHHHHHHHH
Confidence 99875 3455678899999999999999999999999999999974200001126999999998765 3455666666
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCcce----EEEEEe-CchhHHHHHH-hHHHHHHhhhccceEEe
Q psy15223 1230 ILKKIRSKVMQKLEKIRSTGIIGSSLQA----EIILKI-NKLDFEILNE-FGEELKFFLLTSSVSLF 1290 (2492)
Q Consensus 1230 ~~~~lr~~v~~~le~~R~~k~i~~s~~a----~v~i~~-~~~~~~~l~~-~~~~L~~l~~vs~v~i~ 1290 (2492)
.+.+ +...++.+|++..|+..... .+.|.. +.+..+.++. +...|..++++++|++.
T Consensus 747 ~v~~----ii~~iR~~R~~~~i~~~~~l~~~~~~~v~~~~~~~~~~l~~~~~~~i~~l~~~~~v~~~ 809 (1052)
T PRK14900 747 PVLG----IIDAVRNIRGEMGIPWKVKLGAQAPVEIAVADPALRDLLQAGELARVHRVAGVEGSRLV 809 (1052)
T ss_pred HHHH----HHHHHHHHHHHcCCCCCCccCCCCeEEEEcCCHHHHHHHHHHHHHHHHHhhCCCeeEee
Confidence 6664 44556678998888765443 455533 4445566777 77889999998887763
No 32
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6e-141 Score=1456.93 Aligned_cols=775 Identities=25% Similarity=0.415 Sum_probs=685.9
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
++++++++|++||++|+++++|++..+ .++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|+||||
T Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D 85 (800)
T PRK13208 8 KKYDPEELEEKWQKIWEEEGTYKFDPD--ERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWD 85 (800)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccccc--cCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcC
Confidence 468899999999999999999987532 357899999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCC
Q psy15223 1648 CHGMPIEIQIEKLYGK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKG 1724 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kG 1724 (2492)
|||+|||.+|+|++|. .+++++|++.|++|+.++++.|++||++||+++||+++|+|+||.|+++++|+|.+|+++|
T Consensus 86 ~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~G 165 (800)
T PRK13208 86 DNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKG 165 (800)
T ss_pred CCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 9999999999997775 5788999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEE
Q psy15223 1725 YVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHV 1804 (2492)
Q Consensus 1725 liyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v 1804 (2492)
|||++.++|+|||.|+|+|||+||+|++..++++||+|++.+ +.+++||||||||||||+||||
T Consensus 166 liy~~~~~v~wcp~~~t~Lsd~ev~~~~~~~~~~~ikf~~~~----------------~~~l~v~TtrPeTl~g~~ai~v 229 (800)
T PRK13208 166 LIYRAEAPVLWCPRCETAIAQAEVEYREREGKLNYIKFPVED----------------GEEIEIATTRPELLPACVAVVV 229 (800)
T ss_pred CeeecCcccccCCCCCCccchhhhccccccceEEEEEEEecC----------------CCEEEEEeCCcchhhhCeEEEE
Confidence 999999999999999999999999999999999999999752 2489999999999999999999
Q ss_pred cCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCC
Q psy15223 1805 HPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDS 1884 (2492)
Q Consensus 1805 ~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~ 1884 (2492)
||+++ +|. +|.|++|.||++ ++++||++++||++++
T Consensus 230 ~p~~~--------------------------~~~------------~l~g~~~~~P~~------~~~ipii~~~~V~~~~ 265 (800)
T PRK13208 230 HPDDE--------------------------RYK------------HLVGKTAIVPLF------GVEVPILADPLVDPDF 265 (800)
T ss_pred CCCch--------------------------HHH------------HhcCCEEEcCCC------CCcceEECCCccCCCC
Confidence 99952 121 688999999998 8899999999999999
Q ss_pred CCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccccc
Q psy15223 1885 GTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMH 1964 (2492)
Q Consensus 1885 GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~ 1964 (2492)
|||+||++|+||++||+++++||| ++++++|++|+|++++|.|+|+++++|++.|++.|+++|.+++.+++.|+||+
T Consensus 266 GTG~V~~~p~hd~~D~~~~~~~~l---~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~ 342 (800)
T PRK13208 266 GTGAVMICTFGDKTDVTWWRELNL---PTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKF 342 (800)
T ss_pred CcceEEeCCCCCHHHHHHHHHcCC---CcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCc
Confidence 999999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCC-CcccccccCCCceeeEEE
Q psy15223 1965 CWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRP-DWTISRQRHWGVPIAFFI 2043 (2492)
Q Consensus 1965 ~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~-DW~ISRqr~WG~pIP~~~ 2043 (2492)
|||||+||++++++||||++++ |++++++++++++|+|++.++++.+||++++ ||||||||+||||||+|+
T Consensus 343 ~~r~~~~v~~~~~~qwfl~~~~--------~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~ 414 (800)
T PRK13208 343 CERCDTPLEILVTRQWFIKVLD--------LKEELLERGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWY 414 (800)
T ss_pred cCCCCCEEEEeccceeeEeCHH--------HHHHHHHhhcCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEE
Confidence 9999999999999999999988 9999999999999999999999999999977 999999999999999999
Q ss_pred ECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCC-CccCceecccccccccccCcchhhhccCC---ccccCC
Q psy15223 2044 HKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD-DAVNYKKSNDTLDVWFDSGITHQTVIRGS---HKKQLI 2119 (2492)
Q Consensus 2044 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~-~~~~~~~~~dvlDvWfdSg~~~~~~~~~~---~~~~~~ 2119 (2492)
|++||.+.+.+++-+ ..+.|.+......++. +...+.+++||||||||||++|+++++.. ..++.|
T Consensus 415 ~~~~g~~~~~~~~~l----------~~~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~ 484 (800)
T PRK13208 415 CKDCGHPILPDEEDL----------PVDPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFEKV 484 (800)
T ss_pred eCCCCCeecCchhhh----------ccCchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhc
Confidence 999987643211100 0122322211111111 12468999999999999999998877532 234678
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccC
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 2199 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~ 2199 (2492)
||+|++++|+||++|||.++++.+.++.+..||+++++||+++|.+|+|||||+||+|+|.+++++||+|++|||+++++
T Consensus 485 ~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~~ 564 (800)
T PRK13208 485 FPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASAR 564 (800)
T ss_pred CCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVS 2279 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~ 2279 (2492)
+++|++|+++.+..+.+.+++|||+++++.. +.+ . ............|+|++++++.+++++.++|++|+|++|++
T Consensus 565 ~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~-~~~-~--~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~ 640 (800)
T PRK13208 565 LGSDTPFDEKQVKIGRRLLTKLWNASRFVLH-FSA-D--PEPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALE 640 (800)
T ss_pred CCCCceecHHHHHHHHHHHHHHHHHHHHHHh-ccc-c--cccCccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999999999999863 222 0 00111234567899999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeee
Q psy15223 2280 KLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFT 2359 (2492)
Q Consensus 2280 ~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~ 2359 (2492)
.+++|+++++||+||+.+|+|+|....+ ..+.+++.+++++++.+++||+|||||+|||||+.|+ . +||+.
T Consensus 641 ~i~~f~~~~~~n~Yie~~k~~~~~~~~~-~~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~-~-------~si~~ 711 (800)
T PRK13208 641 EIESFFWHVFCDDYLELVKSRAYGEDEE-EEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY-G-------GSVHR 711 (800)
T ss_pred HHHHHHHHHhhHHHHHHhhHHhcCCCCc-HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCC-C-------CceEe
Confidence 9999998889999999999999875432 2367889999999999999999999999999999997 3 48999
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEE-EEEeChhhHHHHHHhHHHHHHhhhcccEE
Q psy15223 2360 QLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEI-ILKINKLDFEILNEFGEELKFFLLTSSVS 2438 (2492)
Q Consensus 2360 ~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v-~i~~~~~~~~~l~~~~~~L~~l~~vs~v~ 2438 (2492)
+.||+.++...++.++..++.+. .++..+|++|++.+++...+..+ ++..+.+ .+.++.+.+.|+++++|++|.
T Consensus 712 ~~wP~~~~~~~~~~~~~~~~~v~----~ii~~iR~~r~~~~i~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~v~ 786 (800)
T PRK13208 712 ASWPEPDEELIDEEDEELGELAK----EILSAVRKYKSEAGLSLNAPLKKVEVYGPAD-LELLEAAEEDLKAAGNIEELE 786 (800)
T ss_pred ccCCCCCcccccHHHHHHHHHHH----HHHHHHHHHHHHcCCCcCCccceEEEecchH-HHHHHHHHHHHHHHhCcCeEE
Confidence 99999876666666666666554 47778888898888876665543 3444445 778888889999999999999
Q ss_pred EeecC
Q psy15223 2439 LFQIK 2443 (2492)
Q Consensus 2439 i~~~~ 2443 (2492)
+....
T Consensus 787 ~~~~~ 791 (800)
T PRK13208 787 LVEGD 791 (800)
T ss_pred EecCC
Confidence 97653
No 33
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=1.9e-139 Score=1452.28 Aligned_cols=744 Identities=27% Similarity=0.449 Sum_probs=666.8
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc------CCCHHHH
Q psy15223 447 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK------NLSPIEI 520 (2492)
Q Consensus 447 ~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~------~~~~~e~ 520 (2492)
.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||||+|||.+|+|.++. ++++++|
T Consensus 30 ~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f 109 (861)
T TIGR00422 30 SNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEF 109 (861)
T ss_pred cCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999998754 4678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccc
Q psy15223 521 QNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEY 600 (2492)
Q Consensus 521 ~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey 600 (2492)
+++|++|++++.+.+++||++||+|+||+++|+||||.|.++++|+|.+||++|||||+.++|+|||.|+|+||++||+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~ 189 (861)
T TIGR00422 110 REKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEY 189 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCcchHhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhH
Q psy15223 601 KKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLV 680 (2492)
Q Consensus 601 ~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~ 680 (2492)
++..++++|++|++.+. .+.+++||||||||||||+||||||+++
T Consensus 190 ~~~~~~~~~i~f~~~~~--------------~~~~l~vaTtrPeTl~~~~av~V~P~~~--------------------- 234 (861)
T TIGR00422 190 KEVKGKLYYIRYPLANG--------------SKDYLVVATTRPETMFGDTAVAVHPEDE--------------------- 234 (861)
T ss_pred ccccceEEEEEEEecCC--------------CCCEEEEEeCCcchhhhCeEEEECCCch---------------------
Confidence 99999999999999642 2369999999999999999999999954
Q ss_pred HHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCC
Q psy15223 681 KSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKD 760 (2492)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~ 760 (2492)
+| ++|+|++|.||++ ++++|||+++||++++|||+||+|||||++||+++++|||
T Consensus 235 -----ry------------~~l~g~~~~~P~~------~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l-- 289 (861)
T TIGR00422 235 -----RY------------KHLIGKKVILPLT------GRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNL-- 289 (861)
T ss_pred -----HH------------HHhcCCEEEcCCC------CCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCC--
Confidence 22 4689999999999 8899999999999999999999999999999999999999
Q ss_pred CCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcc
Q psy15223 761 SDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKN 840 (2492)
Q Consensus 761 ~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~ 840 (2492)
++++++|++|+|++++|.|+|+++++||+.|++.|+++|.|++.++++|+||||||||+||++++++||||++++
T Consensus 290 -~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~---- 364 (861)
T TIGR00422 290 -EFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEK---- 364 (861)
T ss_pred -CccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHH----
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHhh--cceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhc
Q psy15223 841 EKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELN 918 (2492)
Q Consensus 841 ~~~~~~~~~~~~i~--~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 918 (2492)
++++++++++ +++|+|+..++++.+||++++||||||||+||||||+|+|++||++.+.... .+... ..
T Consensus 365 ----~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~-~~~~~----~~ 435 (861)
T TIGR00422 365 ----LADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEE-PLPDD----KT 435 (861)
T ss_pred ----HHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccch-HHhhh----hh
Confidence 9999999997 6999999999999999999999999999999999999999999876522111 11000 00
Q ss_pred CCccccccCchhhcCCCccCceecCCccccccccccccchhcccCc---cccCCcCeeeeecccccchhhHHHHHHHHHH
Q psy15223 919 GIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSII 995 (2492)
Q Consensus 919 g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~ 995 (2492)
..+ ....+.+++||||||||||+++++.+++.. +++++||+|++++|+||+|||+.++++.+.+
T Consensus 436 ------------~~~-~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~ 502 (861)
T TIGR00422 436 ------------NTG-PSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLA 502 (861)
T ss_pred ------------ccC-CcccEEECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHH
Confidence 011 124689999999999999999999987643 2367999999999999999999999999999
Q ss_pred hcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc-CcccccccCHHHHHHHHHHHHHHHHH
Q psy15223 996 LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNT 1074 (2492)
Q Consensus 996 ~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~ 1074 (2492)
+.+..||++|++|||++|.+|+|||||+||+|+|.+++++||+|++|||+++. +.++|++|+++.+....+++++|||+
T Consensus 503 ~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~ 582 (861)
T TIGR00422 503 LTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNA 582 (861)
T ss_pred hcCCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999975 45899999999999999999999999
Q ss_pred HHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccc
Q psy15223 1075 LRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTT 1154 (2492)
Q Consensus 1075 ~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~ 1154 (2492)
.||+..++..+... ..........|+|++++++.+++++.++|++|+|+.|++.+++|+++++||+|++.+|+|+|++
T Consensus 583 ~rf~~~~~~~~~~~--~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~ 660 (861)
T TIGR00422 583 SRFVLMNLSDDLEL--SGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNG 660 (861)
T ss_pred HHHHHhcccccccc--ccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCC
Confidence 99998876654210 0111235678999999999999999999999999999999999998999999999999999864
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHH
Q psy15223 1155 KKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKI 1234 (2492)
Q Consensus 1155 ~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~l 1234 (2492)
. ..++++++.+|+++++.++++|+|||||+|||||+.|+.. .+||+++.||+..+.+.+.++++.++.++++
T Consensus 661 ~--~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~------~~si~~~~~P~~~~~~~d~~~e~~~~~l~~i 732 (861)
T TIGR00422 661 N--EAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG------ADSIMLQSYPVVDAEFVDEEAEKAFELLKEI 732 (861)
T ss_pred C--cHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCccc------CCceeecCCCCcccccCCHHHHHHHHHHHHH
Confidence 3 4567889999999999999999999999999999999753 3699999999987666677777778777754
Q ss_pred HHHHHHHHHHHHhhCCCCCCcceEEEEEe-CchhHHHHHHhHHHHHHhhhccceEEee
Q psy15223 1235 RSKVMQKLEKIRSTGIIGSSLQAEIILKI-NKLDFEILNEFGEELKFFLLTSSVSLFQ 1291 (2492)
Q Consensus 1235 r~~v~~~le~~R~~k~i~~s~~a~v~i~~-~~~~~~~l~~~~~~L~~l~~vs~v~i~~ 1291 (2492)
. ..++.+|++..|+......+.+.. +.+..+.++.+.+.|..++++++|++..
T Consensus 733 i----~~iR~~r~~~~i~~~~~l~~~i~~~~~~~~~~l~~~~~~I~~l~~v~~v~~~~ 786 (861)
T TIGR00422 733 I----VSIRNLKAESNIPPNAPLKVLLIYTEAETAERLKLNAVDIKGAINFSEVEVVI 786 (861)
T ss_pred H----HHHHHHHHHcCCCCCCcceEEEEeCCHHHHHHHHHHHHHHhhhcCCCceEeec
Confidence 4 455678999888876666555543 3445577888889999999999998854
No 34
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.7e-138 Score=1429.24 Aligned_cols=747 Identities=26% Similarity=0.415 Sum_probs=659.1
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc---CCCHHHHHHHH
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK---NLSPIEIQNKA 524 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~---~~~~~e~~~~~ 524 (2492)
++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||||||||.+|++.+|. .+++++|++.|
T Consensus 36 ~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~ 115 (800)
T PRK13208 36 RKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELC 115 (800)
T ss_pred CCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999997765 57789999999
Q ss_pred HHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccccccccccccee
Q psy15223 525 RALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKY 604 (2492)
Q Consensus 525 ~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~ 604 (2492)
++|++++++.|+++|++||+++||+++|+||||.|+++++|+|.+|+++|||||+.++|+|||.|+|+|||+||+|.++.
T Consensus 116 ~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~ 195 (800)
T PRK13208 116 RELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYRERE 195 (800)
T ss_pred HHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCccchhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHH
Q psy15223 605 DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCL 684 (2492)
Q Consensus 605 ~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~ 684 (2492)
++++||+|++.+ +.+++||||||||||||+||||||+++
T Consensus 196 ~~~~~ikf~~~~----------------~~~l~v~TtrPeTl~g~~ai~v~p~~~------------------------- 234 (800)
T PRK13208 196 GKLNYIKFPVED----------------GEEIEIATTRPELLPACVAVVVHPDDE------------------------- 234 (800)
T ss_pred ceEEEEEEEecC----------------CCEEEEEeCCcchhhhCeEEEECCCch-------------------------
Confidence 999999999853 248999999999999999999999953
Q ss_pred HHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcc
Q psy15223 685 KKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDII 764 (2492)
Q Consensus 685 ~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~ 764 (2492)
++ ++|.|+++.||++ ++++|||+++||++++|||+||++|+||++||+++++||| +++
T Consensus 235 -~~------------~~l~g~~~~~P~~------~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l---~~~ 292 (800)
T PRK13208 235 -RY------------KHLVGKTAIVPLF------GVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNL---PTR 292 (800)
T ss_pred -HH------------HHhcCCEEEcCCC------CCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCC---Ccc
Confidence 12 3689999999998 8899999999999999999999999999999999999999 888
Q ss_pred cccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHH
Q psy15223 765 NPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKS 844 (2492)
Q Consensus 765 ~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~ 844 (2492)
+++|++|+|++++|.|+|+++++|++.|++.|+++|.+++.+++.|+||+|||||+||++++++|||+++++
T Consensus 293 ~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~-------- 364 (800)
T PRK13208 293 IIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLD-------- 364 (800)
T ss_pred cccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhhcceEecchhhHHHHHHHhcCC-CeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccc
Q psy15223 845 LRESAITAINKIKFFPSWGKDRLKSMILNRP-DWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW 923 (2492)
Q Consensus 845 ~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~-DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w 923 (2492)
+++++++++++++|+|++.++++.+||++++ ||||||||+||+|||+|+|++||..++...+.+ ..+.|
T Consensus 365 ~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l----------~~~~~ 434 (800)
T PRK13208 365 LKEELLERGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDL----------PVDPT 434 (800)
T ss_pred HHHHHHHhhcCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhh----------ccCch
Confidence 9999999999999999999999999999976 999999999999999999999997652211100 11233
Q ss_pred cccCchhhcC-CCccCceecCCccccccccccccchhcccCc---cccCCcCeeeeecccccchhhHHHHHHHHHHhcCC
Q psy15223 924 QNLDIKEFLG-DDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKS 999 (2492)
Q Consensus 924 ~~~~~~~~~~-~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~ 999 (2492)
.+......++ ++...+++++||||||||||++++++++... .+++|||+|++++|+||+||||.++++.+.++.+.
T Consensus 435 ~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~ 514 (800)
T PRK13208 435 KDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGK 514 (800)
T ss_pred hhccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCC
Confidence 2222211111 1224689999999999999999988776432 23679999999999999999999999999999999
Q ss_pred CCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcccccccCHHHHHHHHHHHHHHHHHHHHHh
Q psy15223 1000 APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLL 1079 (2492)
Q Consensus 1000 ~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l 1079 (2492)
.||+++++|||++|.+|+|||||+||+|+|.+++++||+|++|||++++++++|++|+++.+..+.+.+++|+|++||++
T Consensus 515 ~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~ 594 (800)
T PRK13208 515 LPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASRFVL 594 (800)
T ss_pred CCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcCCCCCCceecHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999987
Q ss_pred hcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChH
Q psy15223 1080 ANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSH 1159 (2492)
Q Consensus 1080 ~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~ 1159 (2492)
. +.+ . ........+...|+|++++++.+++++.++|++|+|++|++.+++|+++++||+|++.+|+|+|.+..+ .
T Consensus 595 ~-~~~-~--~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~-~ 669 (800)
T PRK13208 595 H-FSA-D--PEPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEE-E 669 (800)
T ss_pred h-ccc-c--cccCccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCCc-H
Confidence 3 322 0 001112345678999999999999999999999999999999999998899999999999999976433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHH
Q psy15223 1160 ARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVM 1239 (2492)
Q Consensus 1160 ~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~ 1239 (2492)
.+++++++++++++.++++|+|||||+|||||+.|+ . +||+++.||+.++...+..+++.++.+.++..
T Consensus 670 ~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~-~-------~si~~~~wP~~~~~~~~~~~~~~~~~v~~ii~--- 738 (800)
T PRK13208 670 EQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY-G-------GSVHRASWPEPDEELIDEEDEELGELAKEILS--- 738 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCC-C-------CceEeccCCCCCcccccHHHHHHHHHHHHHHH---
Confidence 367899999999999999999999999999999997 3 59999999997655545556666776665444
Q ss_pred HHHHHHHhhCCCCCCcceEE-EEEeCchhHHHHHHhHHHHHHhhhccceEEeecC
Q psy15223 1240 QKLEKIRSTGIIGSSLQAEI-ILKINKLDFEILNEFGEELKFFLLTSSVSLFQIK 1293 (2492)
Q Consensus 1240 ~~le~~R~~k~i~~s~~a~v-~i~~~~~~~~~l~~~~~~L~~l~~vs~v~i~~~~ 1293 (2492)
.++.+|++.+++......+ .+..+.+ .+.++.+.+.|+++++|++|++....
T Consensus 739 -~iR~~r~~~~i~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~v~~~~~~ 791 (800)
T PRK13208 739 -AVRKYKSEAGLSLNAPLKKVEVYGPAD-LELLEAAEEDLKAAGNIEELELVEGD 791 (800)
T ss_pred -HHHHHHHHcCCCcCCccceEEEecchH-HHHHHHHHHHHHHHhCcCeEEEecCC
Confidence 4445677666654444332 3344445 77888888999999999999987543
No 35
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.3e-134 Score=1402.62 Aligned_cols=788 Identities=18% Similarity=0.214 Sum_probs=633.4
Q ss_pred hhccccCCCCchhHHHhhhcccchhccccc--CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccc
Q psy15223 1567 ILNGELSKREPGWIKKWQEKKIYHQIRKAS--INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVP 1644 (2492)
Q Consensus 1567 ~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~--~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~ 1644 (2492)
.+++++.++|++||++|+++++|++..+.+ .++++|++|+|||||||.|||||++|++++||++||+||+||+|+|||
T Consensus 10 ~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~ 89 (1084)
T PLN02959 10 ARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPF 89 (1084)
T ss_pred chhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 578899999999999999999999865422 245889999999999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHHHh------c-------------------------cCCCHHHHHHHHHHHHHH-------------
Q psy15223 1645 GYDCHGMPIEIQIEKLY------G-------------------------KNLSPIEIQNKARALAYE------------- 1680 (2492)
Q Consensus 1645 G~D~hGlPie~~a~k~~------~-------------------------~~~~~~e~~~~~~~~~~~------------- 1680 (2492)
||||||||||.+|+|.. | .+.++.+|+++|++++.+
T Consensus 90 G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~ 169 (1084)
T PLN02959 90 AFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRS 169 (1084)
T ss_pred CcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhh
Confidence 99999999999998853 2 134578899999999866
Q ss_pred ----------------HH----HHHHHHHHHhcccccccCeeccCC--hHHHHHHHHHHHHHHhCCceEEeCcccccCCC
Q psy15223 1681 ----------------KI----EQQKMDFMRLGILGEWDNSYKTMD--FLNEANELRAFGIIFKKGYVYHGLKPVNWCFD 1738 (2492)
Q Consensus 1681 ----------------~i----~~~~~~~~~lGi~~Dw~~~y~T~d--~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~ 1738 (2492)
++ ..|+++|++||+++||+|+|.|+| |.|.++++|+|.+|+++|+||+|.+||+|||.
T Consensus 170 ~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~ 249 (1084)
T PLN02959 170 FGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPL 249 (1084)
T ss_pred cCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCC
Confidence 33 778999999999999999999999 99999999999999999999999999999999
Q ss_pred CCcccccccccceeeecceEEE--EEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEec
Q psy15223 1739 CKSALAEAEIEYKKKYDFSIYV--GFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIK 1816 (2492)
Q Consensus 1739 ~~t~Lad~Evey~~~~~~~~yv--~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~ 1816 (2492)
|+|+|||||++|++..+++.|+ +|++.++. ...+.. ..+++.++++|||||||||||+||||||+.+|++++++
T Consensus 250 ~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~--~~~~~~--~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~ 325 (1084)
T PLN02959 250 DGQPCADHDRASGEGVGPQEYVLIKMEVLPPF--PGKLKA--LEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEIN 325 (1084)
T ss_pred CCCCchhhHHhcCCCCCcceeEEEEEeecCcc--hhhhhh--cCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEec
Confidence 9999999999999999999994 57765531 111110 01245799999999999999999999999999999987
Q ss_pred CCCCceehhhHHhHHHH-H-HHcCCc-CceE-EEEecccccccEEeCCCCccccCCCce-ecEEecCccccCCCCceEEc
Q psy15223 1817 NDPPLLLILAFNLVKSC-L-KKFGFK-GNII-GICKGIKLSKINFFHPLSNIDINYNRL-SPIYLGDYITVDSGTGIVHS 1891 (2492)
Q Consensus 1817 ~~~~~~~i~a~~~~~~~-~-~~~~~~-~~~v-~~~~G~~l~g~~~~~Pl~~~~~~~~~~-~pi~~~~~V~~~~GTG~V~~ 1891 (2492)
+ ++.+|+++++++++ + ...+.. ...+ .+++|++|+|++|.||++ +++ +||++++||++++|||+||+
T Consensus 326 ~--~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~------~~~~i~ilp~~~V~~~~GTGvV~~ 397 (1084)
T PLN02959 326 D--TEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLA------FNEVIYALPMLTILTDKGTGVVTS 397 (1084)
T ss_pred C--CeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCC------CCcceeEeceEEEeCCCCeeeEEe
Confidence 4 37899999988864 2 221221 2334 999999999999999998 655 89999999999999999999
Q ss_pred CCCCChhhHHH----------HHHcCCCCC-----CcccccCCCCc----------------------------------
Q psy15223 1892 APAYGIEDFLI----------FKKQNMKDS-----DIINPVMDDGN---------------------------------- 1922 (2492)
Q Consensus 1892 ~Pahg~~D~~~----------~~~~~l~~~-----~~~~~vd~~G~---------------------------------- 1922 (2492)
|||||++||.+ +++|||++. +++++||.+|.
T Consensus 398 vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~ 477 (1084)
T PLN02959 398 VPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKG 477 (1084)
T ss_pred CCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhc
Confidence 99999999998 578898432 34667676553
Q ss_pred cccC---CCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHH
Q psy15223 1923 FIST---LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA 1999 (2492)
Q Consensus 1923 ~~~~---~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~ 1999 (2492)
|++. +|.|+|++|++||+.|++.|+++|.++...+. ..|+|||||+||++++++||||++++ +.||+++
T Consensus 478 f~~g~m~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep--~~pv~~R~g~~~~v~l~~QWFi~~~~------~~~k~~a 549 (1084)
T PLN02959 478 FTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEP--EKKVMSRSGDECVVALTDQWYLTYGE------EEWKKKA 549 (1084)
T ss_pred cccccccCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEc--CCCeEECCCCEEEEeecCCeeEECCc------hHHHHHH
Confidence 4433 68899999999999999999999988753331 36899999999999999999999986 3499999
Q ss_pred HHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEE----CC-CCcccCCcHHHHHHHHHHHhhcCccccc
Q psy15223 2000 ITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIH----KK-SGKLHPKTLELIELIAKKIELNGIEIWQ 2074 (2492)
Q Consensus 2000 ~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~----~~-~~~~~~~~~~~~~~i~~~~~~~g~~~w~ 2074 (2492)
++++++|+|+|++++++|.+||+|++||||||||+|||||| |++ +. ++..+......+.++.+.....|.+.|
T Consensus 550 ~~~l~~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpIP-Wd~~~~ieslsdstiy~a~yti~~~~~~~~~~g~~~~- 627 (1084)
T PLN02959 550 EKCLSKMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIP-WDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGKDKS- 627 (1084)
T ss_pred HHHHcccEEECHHHHHHHHHHHhCCCceeecccccCCCcCC-cccceeeccCCCCceeechhhHHHHHhhhhccCCccc-
Confidence 99999999999999999999999999999999999999999 432 11 111111122334555544444455555
Q ss_pred ccchhhhcCCCccCceecccccccccccCcchhhh------c-cCCccccCCcCceeeecccchhhhhHHHHHHHHHHhc
Q psy15223 2075 NLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTV------I-RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILN 2147 (2492)
Q Consensus 2075 ~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~------~-~~~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~ 2147 (2492)
...++ . -..||+|+||+||.++++. + ..+.++++|||+|++++|+||+++||.++++.+.+++
T Consensus 628 ~i~~~--------~--~~~dV~D~wF~Sg~~p~~t~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~ 697 (1084)
T PLN02959 628 SIKPE--------Q--MTDEVWDFVFCGGPLPKSSDIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIW 697 (1084)
T ss_pred cCChh--------h--cCccceeEeecCCCcccccCCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhc
Confidence 22221 1 1578999999999876543 1 1134457799999999999999999999999999999
Q ss_pred CCccc-cEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhcc-CCCCcccccHHHHHHHHHHHHHHHHHH
Q psy15223 2148 KSAPY-KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTL 2225 (2492)
Q Consensus 2148 ~~~pf-k~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~ 2225 (2492)
++.|| +.+++||+|+ .+|+|||||+||+|+|.++|++||||++|||++++ +..+|.+|+++.++. ...+++|.+
T Consensus 698 ~~~P~p~~v~v~G~V~-~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n~---~~~~l~n~~ 773 (1084)
T PLN02959 698 AEEHWPRGFRCNGHLM-LNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETANA---AILRLTKEI 773 (1084)
T ss_pred CCCCCCceEEEccEEe-cCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHHH---HHHHHHHHH
Confidence 99999 5799999999 99999999999999999999999999999999964 788999999988764 455677777
Q ss_pred HHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhH-HHhhhh--hhc
Q psy15223 2226 RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY-LDILKD--RLY 2302 (2492)
Q Consensus 2226 r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Y-le~~K~--~l~ 2302 (2492)
+|+..++.... .......+...|+|++++++.++++++++|++|+|++|++. .|| |+..|+ |+|
T Consensus 774 ~~~~~~~~~~~---~~~~~~~~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~----------~~Yel~~~k~~yr~~ 840 (1084)
T PLN02959 774 AWMEEVLAAES---SLRTGPPSTYADRVFENEINIAIAETEKNYEAMMFREALKS----------GFYDLQAARDEYRLS 840 (1084)
T ss_pred HHHHHhhhhhc---ccCCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH----------HHHHHHHhHHHHhhc
Confidence 77655432100 00011224678999999999999999999999999999994 356 777777 777
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHH---
Q psy15223 2303 TTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYM--- 2379 (2492)
Q Consensus 2303 ~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~--- 2379 (2492)
+... ..++.+|++++..+++||||||||+|||||+.|.+. .+||+++.||..+. .+..++..++
T Consensus 841 ~~~~-----~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~------~~sI~~~~wP~~~~--~d~~~e~~~~~l~ 907 (1084)
T PLN02959 841 CGSG-----GMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKK------EGFAVTAGWPVAGE--PDLTLKRANKYLQ 907 (1084)
T ss_pred cccc-----hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCC------CCeEEecCCCCCCc--cCHHHHHHHHHHH
Confidence 6421 146789999999999999999999999999999532 36999999998763 2455554444
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCCCCC-----ceeEEEEEeChh
Q psy15223 2380 -ILKKIRSKVMQKLEKIRSTGIIGSS-----LQAEIILKINKL 2416 (2492)
Q Consensus 2380 -~~~~~r~~v~~~i~~~R~~~~i~~~-----~~~~v~i~~~~~ 2416 (2492)
.+..+|..+.......|.++..+.+ ....++|+++.+
T Consensus 908 ~~i~~iR~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~IyVA~~ 950 (1084)
T PLN02959 908 DSIVSFRKLLQKQLAGSKKAKKGGAPVTLPEKKLAGLIYVAEK 950 (1084)
T ss_pred HHHHHHHHhHHHhchhhhhcCCCCCCcccccCcceEEEEECCC
Confidence 3444555555555555554443322 123477777554
No 36
>KOG0434|consensus
Probab=100.00 E-value=6.5e-136 Score=1220.79 Aligned_cols=825 Identities=26% Similarity=0.417 Sum_probs=716.3
Q ss_pred ccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc-----
Q psy15223 440 WGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK----- 513 (2492)
Q Consensus 440 y~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~----- 513 (2492)
|..+. ..+++|+|.+.||||+|+|-+|.||.+.-|+||++.||..|+||.|-..+||||||||+|..+.|.+|.
T Consensus 27 F~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~d 106 (1070)
T KOG0434|consen 27 FHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDD 106 (1070)
T ss_pred HHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHH
Confidence 44444 467899999999999999999999999999999999999999999999999999999999999999986
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCc
Q psy15223 514 --NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKS 591 (2492)
Q Consensus 514 --~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~t 591 (2492)
.++..++.++||..+.+|..++++...|||-|+|+++-|.||+|.|.+.+||+|++|++||+||||.|..+||..|.|
T Consensus 107 V~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~T 186 (1070)
T KOG0434|consen 107 VMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACTT 186 (1070)
T ss_pred HHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCceecceeeeccccccCC
Confidence 577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc--ccccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCC
Q psy15223 592 ALAEAE--IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDP 669 (2492)
Q Consensus 592 aLae~E--vey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~ 669 (2492)
+||+-| -.|+|..+|+++|.||+.+. ..+.++.|||||||||+|.|+||||++.|+.++... .
T Consensus 187 PLSNFEa~QNYKdV~DPav~v~F~li~~--------------~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~-~ 251 (1070)
T KOG0434|consen 187 PLSNFEAQQNYKDVPDPAVFVAFPLIGD--------------PNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKT-T 251 (1070)
T ss_pred cccchhcccCcccCCCCeEEEEeeccCC--------------cceeEEEEecCCccCccceeEEEcCCeEEEEEEecc-C
Confidence 999655 47999999999999999764 257899999999999999999999999999998754 4
Q ss_pred CceeeeeHHhHHHHHHHcCCcCcEE-EEEecccccCCEEecCCcccc-cCCCceecEEecCCcccCCCCccEEecCCCCH
Q psy15223 670 PLLLILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNID-INYNRLSPIYLGDYITVDSGTGIVHSAPAYGI 747 (2492)
Q Consensus 670 ~~~~i~a~~~~~~~~~~~~~~~~~~-~~~~G~~l~g~~~~~P~~~~~-~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~ 747 (2492)
+..||+.++++..+.+.-.-++++| ..++|++|.|++|..+|-... ........|+.++||+.+.|||+||+||++|+
T Consensus 252 ~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe 331 (1070)
T KOG0434|consen 252 GKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGE 331 (1070)
T ss_pred CeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccCh
Confidence 5889999999998876554455555 899999999999987663211 22356789999999999999999999999999
Q ss_pred HHHHHHHHcCCCCC--CcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEe
Q psy15223 748 EDFLIFKKQNMKDS--DIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYR 825 (2492)
Q Consensus 748 ~D~~~~~~~~l~~~--~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r 825 (2492)
+||.+|...|+..+ -+.||||++|+||.+.++|+|..|.||.+.||+.|++.|.|+....+.||||+||||.+|+|||
T Consensus 332 ~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYr 411 (1070)
T KOG0434|consen 332 EDYRACVANGIIRKDSLPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYR 411 (1070)
T ss_pred hhHHHHHHcCcccCCCCCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHh
Confidence 99999999998654 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhh-HHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCc
Q psy15223 826 TTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGK-DRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKT 904 (2492)
Q Consensus 826 ~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~-~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~ 904 (2492)
+.|.||+++.+ +.+++++...+..|+|+..+ +|+.|||++.+||.|||+|+||+|||+|+.++..+++
T Consensus 412 aVPsWFVrVk~--------~v~~ll~nn~~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD~eevV--- 480 (1070)
T KOG0434|consen 412 AVPSWFVRVKN--------IVDQLLRNNMKTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVV--- 480 (1070)
T ss_pred hccHhhhhHHH--------HHHHHHhcccccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccCCceEE---
Confidence 99999999988 99999999999999999764 8999999999999999999999999999998876665
Q ss_pred HHHHHHHHHHHhhcCCccccccCchhh----cC--CCccCceecCCccccccccccccchhcccCcc----ccCCcCeee
Q psy15223 905 LELIELIAKKIELNGIEIWQNLDIKEF----LG--DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK----KQLIFPADL 974 (2492)
Q Consensus 905 ~~~i~~~~~~~~~~g~~~w~~~~~~~~----~~--~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~----~~~~~p~Dl 974 (2492)
.+.++.++.+..|.. -.+++-+.. +| .+.+.+.|.++|+|+||+||++|++...++.+ ++..||+|+
T Consensus 481 --cigSi~eLEeLSG~k-ItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPadF 557 (1070)
T KOG0434|consen 481 --CIGSIKELEELSGVK-ITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADF 557 (1070)
T ss_pred --EeccHHHHHHhcCCc-chhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhhcCchHh
Confidence 456677777777755 223322211 23 24578999999999999999999998766543 367899999
Q ss_pred eecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCc--cc
Q psy15223 975 YLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY--SK 1052 (2492)
Q Consensus 975 ~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~--~~ 1052 (2492)
.-||.||.||||+..+..+.++++++||++|+++|+|+.++|+|||||+.|+-+|..|+++||||+||+||.+++. ..
T Consensus 558 IaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE 637 (1070)
T KOG0434|consen 558 IAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAE 637 (1070)
T ss_pred hhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998765 36
Q ss_pred ccccCHHHHHHHH-HHHHHHHHHHHHHhhcCCC--------CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccc
Q psy15223 1053 DLSISNEILNRVV-ETYRRIRNTLRFLLANTSD--------FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYE 1123 (2492)
Q Consensus 1053 d~~fs~~~l~~~~-~~~~kl~n~~rf~l~~l~~--------~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~ 1123 (2492)
.+.|.++.++++. +.+.-++|.+||+.+|... |++.. .+. ..+.+|+||++..++++.-+++-|++|+
T Consensus 638 ~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~-~~~--S~NvmDrWI~a~~qslv~fv~~eM~~Yr 714 (1070)
T KOG0434|consen 638 NLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDD-SVT--SSNVMDRWILASTQSLVGFVREEMDQYR 714 (1070)
T ss_pred ccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCcccccc-ccc--cchhHHHHHHHHHHHHHHHHHHHHHhee
Confidence 8999999988775 4566799999999887542 32221 122 3467999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCC---cc
Q psy15223 1124 FHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKN---FY 1200 (2492)
Q Consensus 1124 f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~---~~ 1200 (2492)
+.+++-.+..|+ ++|+|||+.+.+.||..+. ...+--.|+.+|.++|.+++++|+||.||++|.+||.|.... .+
T Consensus 715 LytVvp~llkfi-D~LTNwYiR~nRrrlkGe~-G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~~ 792 (1070)
T KOG0434|consen 715 LYTVVPRLLKFI-DELTNWYIRFNRRRLKGEN-GEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDKN 792 (1070)
T ss_pred hhhhHHHHHHHH-HHhhhhheehhhhhhcCCC-chHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCcccc
Confidence 999999999999 7899999999999997653 345567899999999999999999999999999999997421 01
Q ss_pred ccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCCCcceEEEEEeCchhHHHHHHhHHHH
Q psy15223 1201 IESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGI--IGSSLQAEIILKINKLDFEILNEFGEEL 1278 (2492)
Q Consensus 1201 ~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~--i~~s~~a~v~i~~~~~~~~~l~~~~~~L 1278 (2492)
.....|||...+|...+...++.++..++.++.+.+.++ ..|..+. ++.+++.-++|+.+++..+-+..+...+
T Consensus 793 ~~~~~SVHfl~~P~~~~~~~de~ve~~v~~m~siIdl~R----~iRern~islKtPLK~~ivi~~d~~~ledik~l~~yI 868 (1070)
T KOG0434|consen 793 EKSERSVHFLSYPTPKEELIDETVERRVERMQSIIDLAR----NIRERNTISLKTPLKELIVIHSDEEYLEDIKSLERYI 868 (1070)
T ss_pred CCccceeEEeecCCchhhhccchHHHHHHHHHHHHHHHH----HHhhccCCcccCchhheEEEcCCHHHHHHHHHHHHHH
Confidence 123579999999987777777777777777776665444 4565555 4678888888888888888888888888
Q ss_pred HHhhhccceEEeecCCCCceEEEE
Q psy15223 1279 KFFLLTSSVSLFQIKNLSEECIII 1302 (2492)
Q Consensus 1279 ~~l~~vs~v~i~~~~~~~~~~v~v 1302 (2492)
.+-++|.+|.+.+.+...++.+++
T Consensus 869 ~eElNVr~v~~~~d~~kyg~~lka 892 (1070)
T KOG0434|consen 869 LEELNVREVVFTSDEEKYGVVLKA 892 (1070)
T ss_pred HHhhcceeeeecccchhcceEEEe
Confidence 888999999887654322334443
No 37
>KOG0434|consensus
Probab=100.00 E-value=7.1e-136 Score=1220.49 Aligned_cols=848 Identities=26% Similarity=0.424 Sum_probs=741.6
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
..|+++-|+++.++|.+.+.|+.+.+..+++|+|.+.||||+|+|.+|.||.+.-|+||++.||..|+||.|-..+||||
T Consensus 7 n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~ 86 (1070)
T KOG0434|consen 7 NFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDT 86 (1070)
T ss_pred cCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeeccccc
Confidence 46889999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHH
Q psy15223 1649 HGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIF 1721 (2492)
Q Consensus 1649 hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~ 1721 (2492)
||||+|..++|.+|+ +++..++.++||..+.++...|++...|+|-|+|+++-|.||+|.|.+.|||+|++|+
T Consensus 87 HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~ 166 (1070)
T KOG0434|consen 87 HGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELH 166 (1070)
T ss_pred CCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHH
Confidence 999999999999987 6788999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEeCcccccCCCCCcccccccc--cceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccc
Q psy15223 1722 KKGYVYHGLKPVNWCFDCKSALAEAEI--EYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPAN 1799 (2492)
Q Consensus 1722 ~kGliyr~~~~v~wcp~~~t~Lad~Ev--ey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~ 1799 (2492)
+||+||||.+..+||..|.|+||+-|- .|+|..+|+++|.|++.+. ..+.++.|||||||||+|
T Consensus 167 ~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~v~F~li~~--------------~~~slvAWTTTPWTLPSN 232 (1070)
T KOG0434|consen 167 EKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGD--------------PNVSLVAWTTTPWTLPSN 232 (1070)
T ss_pred hcCceecceeeeccccccCCcccchhcccCcccCCCCeEEEEeeccCC--------------cceeEEEEecCCccCccc
Confidence 999999999999999999999998665 6999999999999998653 357899999999999999
Q ss_pred cEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceE-EEEecccccccEEeCCCCcccc-CCCceecEEec
Q psy15223 1800 QALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNIDI-NYNRLSPIYLG 1877 (2492)
Q Consensus 1800 ~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~-~~~~~~pi~~~ 1877 (2492)
.|+||||+..|++++..+ .++.||+.++++..+.+.-+..+++| ..+.|++|.|++|..+|-++.. .......|+.+
T Consensus 233 lal~Vnp~~~Yvki~dk~-~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d 311 (1070)
T KOG0434|consen 233 LALCVNPDFQYVKIKDKT-TGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSD 311 (1070)
T ss_pred eeEEEcCCeEEEEEEecc-CCeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEecc
Confidence 999999999999998765 34789999999998877655566667 8999999999999988854433 23567899999
Q ss_pred CccccCCCCceEEcCCCCChhhHHHHHHcCCCCC--CcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCccee
Q psy15223 1878 DYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDS--DIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNI 1955 (2492)
Q Consensus 1878 ~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~--~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~ 1955 (2492)
+||+.+.|||+||+||+.|.+||.+|...|+..+ .+.||||++|+||.+.+.|+|..|+||.+.||+.|++.|.|+..
T Consensus 312 ~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~ 391 (1070)
T KOG0434|consen 312 DYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKA 391 (1070)
T ss_pred CcEecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeee
Confidence 9999999999999999999999999999998554 57899999999999999999999999999999999999999999
Q ss_pred eeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccch-hHHHHhhhCCCCcccccccC
Q psy15223 1956 EMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGK-DRLKSMILNRPDWTISRQRH 2034 (2492)
Q Consensus 1956 ~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~-~~~~~~l~~~~DW~ISRqr~ 2034 (2492)
..+.||||+||||.+|++||+.|.||+++++ +.+++++...+..|+|+..+ +||.|||++.+||.|||+|+
T Consensus 392 ~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~--------~v~~ll~nn~~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~ 463 (1070)
T KOG0434|consen 392 SQITHSYPFCWRSDTPLIYRAVPSWFVRVKN--------IVDQLLRNNMKTHWVPQNIKEKRFANWLKNARDWNISRNRY 463 (1070)
T ss_pred eeeeeccCceecCCChHHHhhccHhhhhHHH--------HHHHHHhcccccccCChhhhHHHHHHHHhhhhhcccccccc
Confidence 9999999999999999999999999999988 99999999999999999865 79999999999999999999
Q ss_pred CCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccch---hhh-cC--CCccCceecccccccccccCcchhh
Q psy15223 2035 WGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDI---KEF-LG--DDAVNYKKSNDTLDVWFDSGITHQT 2108 (2492)
Q Consensus 2035 WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~---~~~-~~--~~~~~~~~~~dvlDvWfdSg~~~~~ 2108 (2492)
||||||+|..++.+++. .+.++.++-+..|.. -.+++- +.+ +| ++.+.+.|..+|+|+||+||.+|++
T Consensus 464 WGTPIpLWVSdD~eevV-----cigSi~eLEeLSG~k-ItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYA 537 (1070)
T KOG0434|consen 464 WGTPIPLWVSDDYEEVV-----CIGSIKELEELSGVK-ITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYA 537 (1070)
T ss_pred cCCCcceEEccCCceEE-----EeccHHHHHHhcCCc-chhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcch
Confidence 99999999999876643 344555555555543 112221 111 22 2346799999999999999999998
Q ss_pred hccCC----ccccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhh
Q psy15223 2109 VIRGS----HKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN 2184 (2492)
Q Consensus 2109 ~~~~~----~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~ 2184 (2492)
....+ ..++..||+|+..+|.||.||||+..+..+.++++++||++++++|+|+.++|+|||||+.|+-+|..+++
T Consensus 538 q~HyPFenk~~fe~~fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iin 617 (1070)
T KOG0434|consen 538 QRHYPFENKEEFEENFPADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIIN 617 (1070)
T ss_pred hhcCCccchHHHhhcCchHhhhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHH
Confidence 76432 33456699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHhccCC--CCcccccHHHHHHHHH-HHHHHHHHHHHHHhcCCC--------CCCCcccccccccchHHHH
Q psy15223 2185 LFGAEILRLWVASTDY--SKDLSISNEILNRVVE-TYRRIRNTLRFLLANTSD--------FNPNINIIKISDMVEIDKY 2253 (2492)
Q Consensus 2185 ~yGaD~lR~~l~s~~~--~~d~~fs~~~l~~~~~-~~~kl~n~~r~~~~~~~~--------~~~~~~~~~~~~~~~~D~~ 2253 (2492)
+||||+||+||.++|. .+.+.|.++.++++.. .+--+||.++|+.+|..- |.+.. ... ..+.+|+|
T Consensus 618 kYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~-~~~--S~NvmDrW 694 (1070)
T KOG0434|consen 618 KYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDD-SVT--SSNVMDRW 694 (1070)
T ss_pred hhcchheeeeeecCccccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCcccccc-ccc--cchhHHHH
Confidence 9999999999998875 4789999999888654 556789999999887432 22221 111 34679999
Q ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccc
Q psy15223 2254 AIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPIL 2333 (2492)
Q Consensus 2254 il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~ 2333 (2492)
|++..++++.-+++.|+.|++..++-.+..|+ ++|+|||+...+.|+.... ...+...|+.+|..+|.+++++|+||+
T Consensus 695 I~a~~qslv~fv~~eM~~YrLytVvp~llkfi-D~LTNwYiR~nRrrlkGe~-G~~d~~~AL~~Lf~vL~t~~r~MaPfT 772 (1070)
T KOG0434|consen 695 ILASTQSLVGFVREEMDQYRLYTVVPRLLKFI-DELTNWYIRFNRRRLKGEN-GEHDCHNALNVLFEVLFTLVRVMAPFT 772 (1070)
T ss_pred HHHHHHHHHHHHHHHHHheehhhhHHHHHHHH-HHhhhhheehhhhhhcCCC-chHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999 7999999999999997653 345667889999999999999999999
Q ss_pred hHHHHHHHHHcccCCc---cccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceeE
Q psy15223 2334 SFTSEEAWSIFSDKNF---YIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGII--GSSLQAE 2408 (2492)
Q Consensus 2334 P~~aEelw~~L~~~~~---~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i--~~~~~~~ 2408 (2492)
||+||.+||+|..... ......|||...+|.+.+...++.++..++.++ .|....|.+|..+.| +.++..-
T Consensus 773 PF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~~~de~ve~~v~~m~----siIdl~R~iRern~islKtPLK~~ 848 (1070)
T KOG0434|consen 773 PFFTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEELIDETVERRVERMQ----SIIDLARNIRERNTISLKTPLKEL 848 (1070)
T ss_pred hHHHHHHHHHHHhcCCccccCCccceeEEeecCCchhhhccchHHHHHHHHH----HHHHHHHHHhhccCCcccCchhhe
Confidence 9999999999975311 124567999999999888888887777766554 466677888888865 5556666
Q ss_pred EEEEeChhhHHHHHHhHHHHHHhhhcccEEEeecCCCCceEEEEEe
Q psy15223 2409 IILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKP 2454 (2492)
Q Consensus 2409 v~i~~~~~~~~~l~~~~~~L~~l~~vs~v~i~~~~~~~~~~v~v~~ 2454 (2492)
++|..+++..+-+..+...+.+-+||.+|.+.+++...++.+++++
T Consensus 849 ivi~~d~~~ledik~l~~yI~eElNVr~v~~~~d~~kyg~~lkaep 894 (1070)
T KOG0434|consen 849 IVIHSDEEYLEDIKSLERYILEELNVREVVFTSDEEKYGVVLKAEP 894 (1070)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHhhcceeeeecccchhcceEEEecC
Confidence 7888788888888888888888899999999887765556555543
No 38
>KOG0432|consensus
Probab=100.00 E-value=2.2e-133 Score=1245.77 Aligned_cols=795 Identities=23% Similarity=0.364 Sum_probs=686.6
Q ss_pred hhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccc
Q psy15223 1567 ILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 1646 (2492)
Q Consensus 1567 ~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~ 1646 (2492)
+..++...+|..|+.+|++++.|++... ....+.|.+..|||+++|.||||||++.++.|.++||+||+||+|+|+||+
T Consensus 43 ~~~y~p~~vE~~wy~ww~k~g~fkp~~~-~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~ 121 (995)
T KOG0432|consen 43 PAAYSPAYVESAWYKWWEKQGFFKPEYG-PNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGT 121 (995)
T ss_pred cccCCccchHHHHHHHHHHcCCCCcccC-CCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCc
Confidence 3457788899999999999999987543 345689999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHH
Q psy15223 1647 DCHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGI 1719 (2492)
Q Consensus 1647 D~hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~ 1719 (2492)
||.|+.++..+||.+.. .+++++|.+++++|.+++...+.+|+++||.|+||+|+++||||...++|.+.|.+
T Consensus 122 DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvr 201 (995)
T KOG0432|consen 122 DHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVR 201 (995)
T ss_pred cccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHH
Confidence 99999999999998753 68999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCch---hhHhhhccCCCCCCccEEEEeecCcchh
Q psy15223 1720 IFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPE---KIKSIFNLKNLPSGKGYIVIWTSTPWTI 1796 (2492)
Q Consensus 1720 L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~---~~~~~~~~~~~~~~~~~l~i~TT~P~Tl 1796 (2492)
||++|+|||+.+.|||||..+|++||.||+|.+..++.+ +..+-.+.. .+...|.+.. .+++..++|+|||||||
T Consensus 202 L~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~-l~vpGyd~~VeFG~L~~faY~v-~gs~~~i~VaTTRpET~ 279 (995)
T KOG0432|consen 202 LHEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTL-LSVPGYDTKVEFGVLYSFAYPV-EGSDEEIVVATTRPETI 279 (995)
T ss_pred HHhcCceEecCceeeechhHHhhhhhheecceecCCCce-EecCCCCcceeeeeeeEEEEec-cCCCCeEEEecCCcccc
Confidence 999999999999999999999999999999988775432 111110000 0000011111 12345999999999999
Q ss_pred ccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEe
Q psy15223 1797 PANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL 1876 (2492)
Q Consensus 1797 ~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~ 1876 (2492)
+|++||||||+++ ||+ .|.|+.++|||+ ++.+|||.
T Consensus 280 lGDvAvAVhP~D~--------------------------RYk------------~lhGk~~~hP~~------~r~lPiI~ 315 (995)
T KOG0432|consen 280 LGDVAVAVHPDDD--------------------------RYK------------HLHGKFVKHPFT------GRKLPIIC 315 (995)
T ss_pred ccceeEEeCCCCc--------------------------ccc------------cccCceeecCCC------CCccceee
Confidence 9999999999953 332 578999999999 99999999
Q ss_pred cCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceee
Q psy15223 1877 GDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIE 1956 (2492)
Q Consensus 1877 ~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~ 1956 (2492)
+.+|++++|||+|+++|||+++||+++++||| +++++++++|.+++.+|+|+||++++||++|++.|++.|++...+
T Consensus 316 D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L---~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~ 392 (995)
T KOG0432|consen 316 DIAVDMEFGTGAVKITPAHDPNDYEVGKRHNL---EFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKE 392 (995)
T ss_pred cccccccccccceEecCCCChhHHHHHHhcCC---CceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhccC
Confidence 99999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhh--cceEecccchhHHHHhhhCCCCcccccccC
Q psy15223 1957 MFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRH 2034 (2492)
Q Consensus 1957 ~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~--~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~ 2034 (2492)
.++...|.|.|||+.|++.+.+|||+++++ +.++++++++ ++++.|+..++++..|+++.+|||||||.|
T Consensus 393 ~h~mvlpiCSRsgDVIEpllkpQW~v~c~e--------ma~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLW 464 (995)
T KOG0432|consen 393 NHPMVLPICSRSGDVIEPLLKPQWFVSCKE--------MAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLW 464 (995)
T ss_pred CCceeccccCCCCCcccccccchheeehHH--------HHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhh
Confidence 999999999999999999999999999988 9999999998 799999999999999999999999999999
Q ss_pred CCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccc--------hhhhc-CCCccCceecccccccccccCcc
Q psy15223 2035 WGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLD--------IKEFL-GDDAVNYKKSNDTLDVWFDSGIT 2105 (2492)
Q Consensus 2035 WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~--------~~~~~-~~~~~~~~~~~dvlDvWfdSg~~ 2105 (2492)
|||+||+|+-.....- ...+.|.-.. +.+.. |.....+.+++|||||||+||++
T Consensus 465 WGHrIPAy~v~~~~~~-----------------~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~ 527 (995)
T KOG0432|consen 465 WGHRIPAYFVNLSDGR-----------------AEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLW 527 (995)
T ss_pred hccccceeeeecccCC-----------------CccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccc
Confidence 9999999876321100 0011222111 01122 22345678999999999999999
Q ss_pred hhhhccCCcc---ccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchh
Q psy15223 2106 HQTVIRGSHK---KQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKL 2182 (2492)
Q Consensus 2106 ~~~~~~~~~~---~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~i 2182 (2492)
|++++++.++ ....||.++.-+|.|++++|+.+|++.++-++|+.||++|++||+|.|.+|+|||||+||||||.|+
T Consensus 528 PfS~lGWP~~t~d~~~fyP~sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDV 607 (995)
T KOG0432|consen 528 PFSTLGWPEETKDFKNFYPLSLLETGHDILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDV 607 (995)
T ss_pred cchhcCCccccccHHhcCCchhhhcCchHHHHHHHHHHHhhhhhcCCCCchheeechhhccccccccchhhccccCHHHH
Confidence 9999987752 2556999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh------------------------------c-------cChhHHHHHHhcc-CCCCcccccHHHHHHHHHHHHHHHHH
Q psy15223 2183 CN------------------------------L-------FGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNT 2224 (2492)
Q Consensus 2183 i~------------------------------~-------yGaD~lR~~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~ 2224 (2492)
|+ . .|.|||||.|++. .-..|+++|-..+.....+.+||||+
T Consensus 608 I~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa 687 (995)
T KOG0432|consen 608 IDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNA 687 (995)
T ss_pred hccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHH
Confidence 97 2 4999999999974 56789999999999999999999999
Q ss_pred HHHHHhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhcc
Q psy15223 2225 LRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYT 2303 (2492)
Q Consensus 2225 ~r~~~~~~~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~ 2303 (2492)
.||+++.+.+ |.|............+|+||+++|+..++.+.+.|+.|+|+.|..++++|+..+||+.|+|.+|+-+|.
T Consensus 688 ~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~ 767 (995)
T KOG0432|consen 688 TRFALQRLGENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWG 767 (995)
T ss_pred HHHHHHhcccCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcC
Confidence 9999987653 555432222222223999999999999999999999999999999999999999999999999999987
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHH
Q psy15223 2304 TKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKK 2383 (2492)
Q Consensus 2304 ~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~ 2383 (2492)
+. ...+..+..+|+.++...++||+|||||+|||+||+|+.... ....|++.++||.....+.|++++..++.+.+
T Consensus 768 ~~--~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~r~~--~~~~si~va~yP~~~~~~~~~e~E~~~~~v~~ 843 (995)
T KOG0432|consen 768 DS--EALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPRRKG--SKPASISVSPYPSSNELWRNEELESAFELVLA 843 (995)
T ss_pred Cc--HHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcccCCC--CCCCceEecCCCchhcccCCHHHHHHHHHHHH
Confidence 53 456778899999999999999999999999999999987521 13458999999977788899999988887764
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceeEEEEEeC-hhhHHHHHHhHHHHHHhhhcccEEEeecCC
Q psy15223 2384 IRSKVMQKLEKIRSTGIIGSSLQAEIILKIN-KLDFEILNEFGEELKFFLLTSSVSLFQIKN 2444 (2492)
Q Consensus 2384 ~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~-~~~~~~l~~~~~~L~~l~~vs~v~i~~~~~ 2444 (2492)
+.+.+|++|+...+.++....+.+..+ +.....++.+.+.|..+.+++.|++....+
T Consensus 844 ----i~~~iRslra~y~l~~~~~~~v~~~~s~~~~~~~~~~~~~~i~~l~~~~~v~i~~~~~ 901 (995)
T KOG0432|consen 844 ----ITRAIRSLRAEYNLSPKPRGSVFIASSDEEDKSILKEFLDEISTLTNLELVSISSPAE 901 (995)
T ss_pred ----HHHHHHHHHHhcCCCCCCceEEEEecCCCcchhHHHHHHHHHHHhhccceeEeccCCc
Confidence 778899999999998754555666543 333567788889999999999999998754
No 39
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.7e-132 Score=1376.34 Aligned_cols=756 Identities=18% Similarity=0.213 Sum_probs=621.8
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHh------C---------
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLY------G--------- 512 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~------~--------- 512 (2492)
++++|++|+|||||||.||||||+|++++||++||+||+||+|+|+|||||||||||.+|+|.. |
T Consensus 43 ~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~ 122 (1084)
T PLN02959 43 PGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEED 122 (1084)
T ss_pred CCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCccccccc
Confidence 4588999999999999999999999999999999999999999999999999999999998852 2
Q ss_pred ----------------cCCCHHHHHHHHHHHHHH-----------------------------HH----HHHHHHHHHcc
Q psy15223 513 ----------------KNLSPIEIQNKARALAYE-----------------------------KI----EQQKMDFMRLG 543 (2492)
Q Consensus 513 ----------------~~~~~~e~~~~~~~~a~~-----------------------------~i----~~~~~~~~~lG 543 (2492)
.+.++.+|+++|+++|.+ ++ ..|+++|+|||
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG 202 (1084)
T PLN02959 123 EDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFG 202 (1084)
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhC
Confidence 134578999999999876 33 77899999999
Q ss_pred ccccccCeeecCC--hHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEE--EEeecCCchh
Q psy15223 544 ILGEWDNSYKTMD--FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIY--VGFSFSEPEK 619 (2492)
Q Consensus 544 i~~Dw~~~y~T~d--~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~y--v~f~~~~~~~ 619 (2492)
+++||+|+|.||| |.|+++++|+|.+|+++|+||||.+||+|||.|+|+|||+|++|.++.+++.| |+|++.+..
T Consensus 203 ~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~- 281 (1084)
T PLN02959 203 LGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPF- 281 (1084)
T ss_pred ceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcc-
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999 458776531
Q ss_pred hhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH--HHHcCCc--CcEEE
Q psy15223 620 IKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC--LKKFGFK--GNIIG 695 (2492)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~--~~~~~~~--~~~~~ 695 (2492)
...+. ...+++.+++||||||||||||+||||||+++|++++.++ ++.||+++++++++ +...+.. ..++.
T Consensus 282 -~~~~~--~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~--~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~ 356 (1084)
T PLN02959 282 -PGKLK--ALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEIND--TEVFILTARAALNLAYQNFSKVPGKPTCLV 356 (1084)
T ss_pred -hhhhh--hcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecC--CeEEEEehhhhhhhHHhhhcccCCCcEEEE
Confidence 11111 0123468999999999999999999999999999999864 38999999998864 2222222 23559
Q ss_pred EEecccccCCEEecCCcccccCCCce-ecEEecCCcccCCCCccEEecCCCCHHHHHH----------HHHcCCCCC---
Q psy15223 696 ICKGIKLSKINFFHPLSNIDINYNRL-SPIYLGDYITVDSGTGIVHSAPAYGIEDFLI----------FKKQNMKDS--- 761 (2492)
Q Consensus 696 ~~~G~~l~g~~~~~P~~~~~~~~~~~-~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~----------~~~~~l~~~--- 761 (2492)
+++|++|+|++|.||+. +++ +||++++||++++|||+||+|||||++||.+ +++|||+.+
T Consensus 357 ~~~G~~L~G~~~~~Pl~------~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~ 430 (1084)
T PLN02959 357 ELTGYDLIGLPLKSPLA------FNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVL 430 (1084)
T ss_pred EEEHHHhCCCEEECCCC------CCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCccccc
Confidence 99999999999999998 555 8999999999999999999999999999998 688998432
Q ss_pred --CcccccCCCCc----------------------------------cccc---CCCCCCcchhhchHHHHHHHHhcCCe
Q psy15223 762 --DIINPVMDDGN----------------------------------FIST---LPLFGGMSIWKASKLICSYLKKSKTL 802 (2492)
Q Consensus 762 --~~~~~vd~~G~----------------------------------~~~~---~~~~~G~~v~~a~~~i~~~L~~~g~l 802 (2492)
+++++||.+|. |++. +|.|+|++|++||+.|++.|++.|.+
T Consensus 431 ~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G~~v~eAr~~Ii~~L~~~G~l 510 (1084)
T PLN02959 431 PFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQA 510 (1084)
T ss_pred ccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcCCcCHHHHHHHHHHHHHhCCCc
Confidence 44778787764 5544 58899999999999999999999988
Q ss_pred ee-eeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeec
Q psy15223 803 FN-IEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISR 881 (2492)
Q Consensus 803 ~~-~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISR 881 (2492)
+. .+. ..|+|||||+||++++++||||++++ +.||+++++++++|+|+|+++++++.+||+|++||||||
T Consensus 511 ~~~~ep---~~pv~~R~g~~~~v~l~~QWFi~~~~------~~~k~~a~~~l~~v~~~P~~~~~~~~~wl~~l~DWciSR 581 (1084)
T PLN02959 511 ILYSEP---EKKVMSRSGDECVVALTDQWYLTYGE------EEWKKKAEKCLSKMNLYSDETRHGFEHTLGWLNQWACSR 581 (1084)
T ss_pred eeeeEc---CCCeEECCCCEEEEeecCCeeEECCc------hHHHHHHHHHHcccEEECHHHHHHHHHHHhCCCceeecc
Confidence 75 443 36899999999999999999999985 349999999999999999999999999999999999999
Q ss_pred cccCCceeeEEEE----C-CCCccccCcHHHHHHHHHHHhhcCCccccccCchhhcCCCccCceecCCcccccccccccc
Q psy15223 882 QRHWGVPIAFFIH----K-KSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 956 (2492)
Q Consensus 882 qr~WGvpIP~~~~----~-~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~ 956 (2492)
||+|||||| |+| + .++..+......++++.+.....|.+.| ..+++ ++ +.||+|+||+||.++
T Consensus 582 Qr~wGtpIP-Wd~~~~ieslsdstiy~a~yti~~~~~~~~~~g~~~~-~i~~~--------~~--~~dV~D~wF~Sg~~p 649 (1084)
T PLN02959 582 SFGLGTRIP-WDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGKDKS-SIKPE--------QM--TDEVWDFVFCGGPLP 649 (1084)
T ss_pred cccCCCcCC-cccceeeccCCCCceeechhhHHHHHhhhhccCCccc-cCChh--------hc--CccceeEeecCCCcc
Confidence 999999999 432 2 2222222344556676665555577666 22222 12 578999999999876
Q ss_pred chhccc--------CccccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCc-eEEEEeeEEEcCCCccccccCCCcc
Q psy15223 957 QTVIRG--------SHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKSKGNII 1027 (2492)
Q Consensus 957 ~~~~~~--------~~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~-k~v~~hG~vld~~G~KMSKS~GN~i 1027 (2492)
.+. +. +.++++|||+|+|++|+||+|+||.++++.+.++++..|| +.+++||||+ .+|+|||||+||+|
T Consensus 650 ~~t-~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G~KMSKSkGNvI 727 (1084)
T PLN02959 650 KSS-DIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLM-LNSEKMSKSTGNFL 727 (1084)
T ss_pred ccc-CCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEe-cCCcCccccCCCcC
Confidence 543 21 2334789999999999999999999999999999999999 6799999999 99999999999999
Q ss_pred CcchhhhhcChhhHHHHhhcc-CcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHH
Q psy15223 1028 KPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAII 1106 (2492)
Q Consensus 1028 ~p~~ii~~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~ 1106 (2492)
+|.++|++||||++|||++++ +..+|++|+++.++. ++++++|+++|+..++.... .......+...|+|+++
T Consensus 728 ~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n~---~~~~l~n~~~~~~~~~~~~~---~~~~~~~~~~~D~wils 801 (1084)
T PLN02959 728 TLRQAIEEFSADATRFALADAGDGVDDANFVFETANA---AILRLTKEIAWMEEVLAAES---SLRTGPPSTYADRVFEN 801 (1084)
T ss_pred CHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHHH---HHHHHHHHHHHHHHhhhhhc---ccCCcccCCHHHHHHHH
Confidence 999999999999999999974 778999999988764 46778888887765543100 00111224678999999
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhH-HHhhhh--hhccccCChHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15223 1107 NITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY-LDILKD--RLYTTKKNSHARRSAQTSIWHINQSLLRLISPIL 1183 (2492)
Q Consensus 1107 ~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Y-l~~~Kd--rl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPil 1183 (2492)
+++.++++++++|++|+|++|++. .|| |+..|+ |+|++.. ..++++|+++|..+++||||||
T Consensus 802 ~l~~~i~~v~~a~e~y~f~~A~~~----------~~Yel~~~k~~yr~~~~~~-----~~~~~~L~~vl~~~l~LLaP~~ 866 (1084)
T PLN02959 802 EINIAIAETEKNYEAMMFREALKS----------GFYDLQAARDEYRLSCGSG-----GMNRDLVWRFMDVQTRLITPIC 866 (1084)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHH----------HHHHHHHhHHHHhhccccc-----hHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999994 357 788888 8887531 1568899999999999999999
Q ss_pred hhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCCCCc----
Q psy15223 1184 SFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKY----MILKKIRSKVMQKLEKIRSTGIIGSSL---- 1255 (2492)
Q Consensus 1184 P~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~----~~~~~lr~~v~~~le~~R~~k~i~~s~---- 1255 (2492)
||+|||||+.|.+. .+||+++.||+.+.. +..+++.+ +.+..+|..+....+..|++|.++.++
T Consensus 867 PfiaEEiW~~l~~~------~~sI~~~~wP~~~~~--d~~~e~~~~~l~~~i~~iR~~~~~~~~~~~~~k~~~~~~~~~~ 938 (1084)
T PLN02959 867 PHYAEHVWREILKK------EGFAVTAGWPVAGEP--DLTLKRANKYLQDSIVSFRKLLQKQLAGSKKAKKGGAPVTLPE 938 (1084)
T ss_pred hHHHHHHHHhccCC------CCeEEecCCCCCCcc--CHHHHHHHHHHHHHHHHHHHhHHHhchhhhhcCCCCCCccccc
Confidence 99999999999532 369999999986533 44444433 445566666666666777766655432
Q ss_pred -ceEEEEEeCchh
Q psy15223 1256 -QAEIILKINKLD 1267 (2492)
Q Consensus 1256 -~a~v~i~~~~~~ 1267 (2492)
...|+|++.++.
T Consensus 939 ~~~~v~IyVA~~y 951 (1084)
T PLN02959 939 KKLAGLIYVAEKY 951 (1084)
T ss_pred CcceEEEEECCCC
Confidence 234778776553
No 40
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=1.1e-133 Score=1340.01 Aligned_cols=580 Identities=44% Similarity=0.785 Sum_probs=519.9
Q ss_pred cccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc--
Q psy15223 437 NGVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-- 513 (2492)
Q Consensus 437 ~~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~-- 513 (2492)
+.+|++.. .++++++|++++|||||||.||||||+|+|++|+++||+||+||+|+|+|||||||||||.+|+|.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~ 88 (601)
T PF00133_consen 9 NKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKE 88 (601)
T ss_dssp TTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTS
T ss_pred CCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccc
Confidence 35677665 567789999999999999999999999999999999999999999999999999999999999999864
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCC
Q psy15223 514 -----NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFD 588 (2492)
Q Consensus 514 -----~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~ 588 (2492)
.+++++|+++|++|+.++++.|++||++||+++||+++|.||||.|+++++|+|.+|+++|||||+.+||+|||.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~ 168 (601)
T PF00133_consen 89 KKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPS 168 (601)
T ss_dssp HHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETT
T ss_pred cccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcc
Confidence 688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCC
Q psy15223 589 CKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKND 668 (2492)
Q Consensus 589 ~~taLae~Evey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~ 668 (2492)
|+|+|||+||+|+++.++++||+|++.+. .+++++||||||||||||+||||||+.+|+ .++
T Consensus 169 ~~t~lsd~Ev~~~~~~~~~~~v~f~~~~~--------------~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~---~~~- 230 (601)
T PF00133_consen 169 CQTALSDHEVEYKEVKSPSIYVKFPLKDG--------------EEVYLVIWTTRPETLPGNTAIAVNPDFDYV---ING- 230 (601)
T ss_dssp TTEEE-GGGEEEEEEEEEEEEEEEEESSS--------------SEEEEEEEES-GGGGGG-BEEEE-TTSEEE---ETT-
T ss_pred cccchhhhhcccccccCceEEEEEEecCc--------------cceEEEEEechhhHHhCCeeEEECCCccce---eCC-
Confidence 99999999999999999999999999653 247999999999999999999999999999 433
Q ss_pred CCceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHH
Q psy15223 669 PPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIE 748 (2492)
Q Consensus 669 ~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~ 748 (2492)
+.+|+|++++++++++.+.. +.+++|++|+|++|.||+. ++.+|||+++||++++|||+||+|||||++
T Consensus 231 --~~~i~~~~~~~~~~~~~~~~---~~~~~g~~L~g~~~~~P~~------~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~ 299 (601)
T PF00133_consen 231 --ERYIVAKDLVEKLSKQEKTK---LEDFRGKELVGLKYIHPLT------GREVPVIPDDFVDMDKGTGIVHSAPAHGPD 299 (601)
T ss_dssp --EEEEEEHHHHHHHHTTTSSS---EEEEECHHHTTSEEE-TTS------SSSEEEEEETTS-SSSTTSEEEE-TTT-HH
T ss_pred --eeehHHHHHHHHHHhhhhhc---ccccCcceecCcEeccccc------cceeEEEcccccccccchhhhhhcccCCHH
Confidence 89999999999999887655 8999999999999999998 889999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecc
Q psy15223 749 DFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTL 828 (2492)
Q Consensus 749 D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~ 828 (2492)
||.+|++++| +++++||++|+|++++++|.|++|++||+.|++.|+++|.|++.++++|+||||||||+||++++++
T Consensus 300 Dy~~~~~~~l---~~~~~id~~G~~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~ 376 (601)
T PF00133_consen 300 DYEIGKKHNL---PIINPIDEDGRFTEEAGKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTD 376 (601)
T ss_dssp HHHHHHHHHH---CCGCCCCCTSTBBSCCSTTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEE
T ss_pred HHHHHhhcCc---eeeEecCCCceEeecccccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccc
Confidence 9999999999 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHH
Q psy15223 829 QWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELI 908 (2492)
Q Consensus 829 QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i 908 (2492)
||||++++ |++++++++++++|+|+++++++.+||++++||||||||+||||||+|+|++|++.. ...+..
T Consensus 377 QWFi~~~~--------~k~~~l~~~~~i~~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~~~-~~~~~~ 447 (601)
T PF00133_consen 377 QWFIKYDD--------WKKKALEALEKIKFYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCGEVL-VIESTI 447 (601)
T ss_dssp EEEEEHHH--------HHHHHHHHHHTSEESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETTSEEEE-CCGGHH
T ss_pred eeEEecHH--------hHHHHHhhcccceEEcccchhhhhhhccccccchhhccCCCCccceeeecccCcccc-cccccc
Confidence 99999998 999999999999999999999999999999999999999999999999999999876 334667
Q ss_pred HHHHHHHhhcCCccccccCchhhcCCCccCceecCCccccccccccccchhcccCc----cccCCcCeeeeecccccchh
Q psy15223 909 ELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLIFPADLYLEGSDQHRG 984 (2492)
Q Consensus 909 ~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~----~~~~~~p~Dl~~~G~D~~rg 984 (2492)
+.++..++..|.+.|+..+..+.++.++..+.+++||||||||||++++++++... ++++|||+|+|++|+||+||
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~~ 527 (601)
T PF00133_consen 448 ELIADRVEKEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIRG 527 (601)
T ss_dssp HHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTTT
T ss_pred cccccccccccccccccccccccccccccceEEeeeeccccccccCCcccccccccccchhccccCCcccccCCccchhh
Confidence 77777888889999999888888887888999999999999999999999887543 33789999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhh-ccCcccccccC
Q psy15223 985 WFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-STDYSKDLSIS 1057 (2492)
Q Consensus 985 wf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~-s~~~~~d~~fs 1057 (2492)
||+++++.+.++.+..||++|++||||+|.+|+|||||+||+|+|.++|++||||++|||++ ++++.+|++||
T Consensus 528 W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 528 WFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIEKYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp HHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred HHHHhHhhccccccCCchheeeecccccccceeecccCCCcccCHHHHHHHhCcHHHHHHHHhcCCcccCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999 68999999987
No 41
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=1.2e-133 Score=1339.60 Aligned_cols=589 Identities=44% Similarity=0.793 Sum_probs=527.8
Q ss_pred hhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHH
Q psy15223 1578 GWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 1657 (2492)
Q Consensus 1578 ~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a 1657 (2492)
|||++|+++++|++..+.++++++|++++||||+||.||||||+|+|++|+++||+||+||+|+|+|||||||||||.++
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~v 80 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKV 80 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhH
Confidence 79999999999999866777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeC
Q psy15223 1658 EKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGL 1730 (2492)
Q Consensus 1658 ~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~ 1730 (2492)
+|.++. .+++++|++.|++|+.++++.|++||++||+++||+++|.||||.|+++++|+|.+|+++|||||+.
T Consensus 81 ek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~ 160 (601)
T PF00133_consen 81 EKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGK 160 (601)
T ss_dssp HHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeC
Confidence 999864 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCE
Q psy15223 1731 KPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDY 1810 (2492)
Q Consensus 1731 ~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y 1810 (2492)
+||+|||.|+|+|||+||+|++..++++||+|++.+. .+++++||||||||||||+||||||+.+|
T Consensus 161 ~pv~w~p~~~t~lsd~Ev~~~~~~~~~~~v~f~~~~~--------------~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y 226 (601)
T PF00133_consen 161 KPVNWCPSCQTALSDHEVEYKEVKSPSIYVKFPLKDG--------------EEVYLVIWTTRPETLPGNTAIAVNPDFDY 226 (601)
T ss_dssp EEEEEETTTTEEE-GGGEEEEEEEEEEEEEEEEESSS--------------SEEEEEEEES-GGGGGG-BEEEE-TTSEE
T ss_pred CCCCcCcccccchhhhhcccccccCceEEEEEEecCc--------------cceEEEEEechhhHHhCCeeEEECCCccc
Confidence 9999999999999999999999999999999999653 24699999999999999999999999999
Q ss_pred EEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEE
Q psy15223 1811 ALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVH 1890 (2492)
Q Consensus 1811 ~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~ 1890 (2492)
+ .+ ++.+|+|+++++++.++.+.. +.+++|++|+|++|.||++ ++.+||++++||++++|||+||
T Consensus 227 ~---~~---~~~~i~~~~~~~~~~~~~~~~---~~~~~g~~L~g~~~~~P~~------~~~~~vi~~~~V~~~~GTGiV~ 291 (601)
T PF00133_consen 227 V---IN---GERYIVAKDLVEKLSKQEKTK---LEDFRGKELVGLKYIHPLT------GREVPVIPDDFVDMDKGTGIVH 291 (601)
T ss_dssp E---ET---TEEEEEEHHHHHHHHTTTSSS---EEEEECHHHTTSEEE-TTS------SSSEEEEEETTS-SSSTTSEEE
T ss_pred e---eC---CeeehHHHHHHHHHHhhhhhc---ccccCcceecCcEeccccc------cceeEEEcccccccccchhhhh
Confidence 9 22 388999999999998877644 8999999999999999998 8999999999999999999999
Q ss_pred cCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCC
Q psy15223 1891 SAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKT 1970 (2492)
Q Consensus 1891 ~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~ 1970 (2492)
+|||||++||.+++++++ ++++++|++|+|++++++|.|++|++|++.|++.|+++|.|++.++++|+||+|||||+
T Consensus 292 ~~Pah~~~Dy~~~~~~~l---~~~~~id~~G~~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~ 368 (601)
T PF00133_consen 292 SAPAHGPDDYEIGKKHNL---PIINPIDEDGRFTEEAGKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGT 368 (601)
T ss_dssp E-TTT-HHHHHHHHHHHH---CCGCCCCCTSTBBSCCSTTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSC
T ss_pred hcccCCHHHHHHHhhcCc---eeeEecCCCceEeecccccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCC
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcc
Q psy15223 1971 PIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKL 2050 (2492)
Q Consensus 1971 pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~ 2050 (2492)
||++++++||||++++ |++++++++++|+|+|++.+++|.+||++++||||||||+||||||+|+|++|++.
T Consensus 369 ~ii~~~~~QWFi~~~~--------~k~~~l~~~~~i~~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~~ 440 (601)
T PF00133_consen 369 PIIPRLTDQWFIKYDD--------WKKKALEALEKIKFYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCGEV 440 (601)
T ss_dssp BEEEEEEEEEEEEHHH--------HHHHHHHHHHTSEESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETTSEEE
T ss_pred EEEecccceeEEecHH--------hHHHHHhhcccceEEcccchhhhhhhccccccchhhccCCCCccceeeecccCccc
Confidence 9999999999999998 99999999999999999999999999999999999999999999999999999886
Q ss_pred cCCcHHHHHHHHHHHhhcCcccccccchhhhcCCCccCceecccccccccccCcchhhhccCC----ccccCCcCceeee
Q psy15223 2051 HPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGS----HKKQLIFPADLYL 2126 (2492)
Q Consensus 2051 ~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~----~~~~~~~P~Dl~~ 2126 (2492)
.. ..+..+.++..+...+.+.|+..+..+.++.++..+.+++||||||||||++++++++.. .++++|||+|+++
T Consensus 441 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~ 519 (601)
T PF00133_consen 441 LV-IESTIELIADRVEKEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYI 519 (601)
T ss_dssp EC-CGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEE
T ss_pred cc-ccccccccccccccccccccccccccccccccccceEEeeeeccccccccCCcccccccccccchhccccCCccccc
Confidence 53 335666667777778888898887777777778899999999999999999999988743 3346789999999
Q ss_pred cccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHh-ccCCCCccc
Q psy15223 2127 EGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-STDYSKDLS 2205 (2492)
Q Consensus 2127 ~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~-s~~~~~d~~ 2205 (2492)
+|+||+||||+++++.+.+++++.||+++++||||+|.+|+|||||+||+|+|.++|++||||++|||++ ++++.+|++
T Consensus 520 ~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~~~~~~D~~ 599 (601)
T PF00133_consen 520 EGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIEKYGADALRLWLASSADPGQDIN 599 (601)
T ss_dssp EEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHHS-TTS-EE
T ss_pred CCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCcccCHHHHHHHhCcHHHHHHHHhcCCcccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 688999999
Q ss_pred cc
Q psy15223 2206 IS 2207 (2492)
Q Consensus 2206 fs 2207 (2492)
||
T Consensus 600 ~s 601 (601)
T PF00133_consen 600 FS 601 (601)
T ss_dssp E-
T ss_pred cC
Confidence 96
No 42
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=2e-127 Score=1326.69 Aligned_cols=754 Identities=18% Similarity=0.263 Sum_probs=623.9
Q ss_pred CCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHH
Q psy15223 1574 KREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPI 1653 (2492)
Q Consensus 1574 ~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPi 1653 (2492)
++|++||++|+++++|++.. .++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|||||||||+||
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~---~~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi 78 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADP---DDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPI 78 (938)
T ss_pred hHHHHHHHHHHhCCCcccCC---CCCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCch
Confidence 58999999999999998742 257899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc------------cCCCHHHHHHHH--HHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHH
Q psy15223 1654 EIQIEKLYG------------KNLSPIEIQNKA--RALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGI 1719 (2492)
Q Consensus 1654 e~~a~k~~~------------~~~~~~e~~~~~--~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~ 1719 (2492)
|..|+|... .++++++|.++| ++|+.++.+.+++||++||+++||+|+|.|+||.|.++++|+|.+
T Consensus 79 ~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~ 158 (938)
T TIGR00395 79 LGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNK 158 (938)
T ss_pred HHHHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHH
Confidence 999988431 157899999998 899999999999999999999999999999999999999999999
Q ss_pred HHhCCceEEeCcccccCCCCCcccccccccceeeec--ceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhc
Q psy15223 1720 IFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYD--FSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIP 1797 (2492)
Q Consensus 1720 L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~--~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~ 1797 (2492)
|+++|+||++.+||+|||.|+|+|||+|+++++..+ ..+||+|++.+ .+.+++||||||||||
T Consensus 159 L~e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~---------------~~~~l~~aTtRPETl~ 223 (938)
T TIGR00395 159 LKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELED---------------GAFYFVAATLRPETVY 223 (938)
T ss_pred HHHCCCEecCCeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCC---------------CceEEEEeeCCcchhh
Confidence 999999999999999999999999999999887655 45789998743 2368999999999999
Q ss_pred cccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEec
Q psy15223 1798 ANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLG 1877 (2492)
Q Consensus 1798 ~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~ 1877 (2492)
|++||||||+++|+++++++ +.+|+++++++++..+ +.....+.+++|++|+|++|.||++ ++++||+++
T Consensus 224 g~tav~V~P~~~Y~~~~~~~---e~~i~s~~~~~~~~~q-~~~~~~~~~~~g~~l~G~~~~~P~~------~~~ipil~~ 293 (938)
T TIGR00395 224 GVTNCWVNPTITYVIAEVGG---EKWITSKEAFENLSYQ-KLKYKPIEEVPGKQFIGKKVHNPVV------GPEVPILPA 293 (938)
T ss_pred cceeEEECCCCcEEEEEeCC---cEEEEeHHHHHhhhhc-ccceeEEEEEchHhccCCEEECCCC------CCeeEEeec
Confidence 99999999999999999864 7899999999887543 1121233899999999999999998 889999999
Q ss_pred CccccCCCCceEEcCCCCChhhHHHHHHc-------CCCC----CCccc--ccCC-------------------------
Q psy15223 1878 DYITVDSGTGIVHSAPAYGIEDFLIFKKQ-------NMKD----SDIIN--PVMD------------------------- 1919 (2492)
Q Consensus 1878 ~~V~~~~GTG~V~~~Pahg~~D~~~~~~~-------~l~~----~~~~~--~vd~------------------------- 1919 (2492)
+||++++|||+||++||||++||.+++++ |+.+ -++++ .+++
T Consensus 294 ~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~ 373 (938)
T TIGR00395 294 EFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLE 373 (938)
T ss_pred ceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHH
Confidence 99999999999999999999999998863 3311 02222 2221
Q ss_pred ------------CCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEe-ecccceeecCC
Q psy15223 1920 ------------DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYR-TTLQWFINMDK 1986 (2492)
Q Consensus 1920 ------------~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~-~~~QWFi~~~~ 1986 (2492)
+|+|+.+++.|+|++|++|++.|++.|+++|.+++.+++.| +|+|||||+||+++ +++||||++++
T Consensus 374 ~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i~~~L~~~g~~~~~~~~~~-~~v~~R~g~~~vv~~~~~QWFi~~~~ 452 (938)
T TIGR00395 374 EATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVKADLIDAGLADVMYEFSE-SPVICRCGTDCIVKVVEDQWFVKYSD 452 (938)
T ss_pred HHHHHHhhhhccCceeccCCcccCCcCHHHhHHHHHHHHHHCCCceEeeecCC-CCcEecCCCeEEEeccCCCCeEEcCc
Confidence 57778788899999999999999999999999999887754 57788999999998 99999999996
Q ss_pred CCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHH-HHHHHHHHH
Q psy15223 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLE-LIELIAKKI 2065 (2492)
Q Consensus 1987 ~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~-~~~~i~~~~ 2065 (2492)
+.||+++++++++++|+|+..++++.+||+|++||||||||+||||||+...+-+..+...+.. ..+.+++.+
T Consensus 453 ------~~~k~~~~~~l~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l 526 (938)
T TIGR00395 453 ------ESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYL 526 (938)
T ss_pred ------HHHHHHHHHHHhcCEEeCHHHHHHHHHHHhhhhhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHh
Confidence 4499999999999999999999999999999999999999999999996321112222111111 122333333
Q ss_pred hhcCcccccccchhhhcCCCccCceeccccccccccc-------CcchhhhccCCccccCCcCceeeecccchhhhhHHH
Q psy15223 2066 ELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDS-------GITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS 2138 (2492)
Q Consensus 2066 ~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdS-------g~~~~~~~~~~~~~~~~~P~Dl~~~G~D~~r~wf~~ 2138 (2492)
...+.+.+ .+ ..+++|+||.+ |++.......+.++++|||+|+|++|+||+++|...
T Consensus 527 ~~~~~~~~--------------~l--~~ev~D~~~~~~~~~~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~ 590 (938)
T TIGR00395 527 NKDYYGNE--------------QM--TDEFFDYIFLGKGDVKNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTF 590 (938)
T ss_pred hccCCChH--------------HC--CcccCceEEECCCChhhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHH
Confidence 32222111 11 23456666543 332221112234457899999999999999999998
Q ss_pred HHHHHHHhcCCccc-cEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHH
Q psy15223 2139 SLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE 2216 (2492)
Q Consensus 2139 ~l~~~~~l~~~~pf-k~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~ 2216 (2492)
.++.+.++++..|| +++++|||+++ +|+|||||+||+|+|.+++++||+|++||||++ +++++|++|+++.+.++.+
T Consensus 591 ~i~~~~a~~~~~~~Pk~i~~~G~vl~-~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~ 669 (938)
T TIGR00395 591 YIFHHVAIFPEKFWPRGIVVNGYVML-EGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTIL 669 (938)
T ss_pred HHHHHHHcCCccccCcEEEEeceEEe-CCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Confidence 89999999888888 89999999996 899999999999999999999999999999997 4899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHhhhhhhHHH
Q psy15223 2217 TYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIV-SKLQIYCSEDLGSFYLD 2295 (2492)
Q Consensus 2217 ~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~-~~l~~f~~~~ls~~Yle 2295 (2492)
.+.+++|+++++..... +.. ....+..|+|+++++++++++++++|++|+|++|+ ..++.|++. +++|++
T Consensus 670 ~l~~l~n~~~~~~~~~~---~~~----~~~~~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~--~n~Yl~ 740 (938)
T TIGR00395 670 RLERLYEFAEEITKESN---LET----GEETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQAD--VDWYRR 740 (938)
T ss_pred HHHHHHHHHHHHHhhcc---cCC----CccCChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--HHHHHH
Confidence 99999999988765321 110 01245789999999999999999999999999999 778899854 799987
Q ss_pred hhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHH
Q psy15223 2296 ILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLL 2375 (2492)
Q Consensus 2296 ~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~ 2375 (2492)
..+.+ ...+++++++.+++||+|||||+|||||+.|+.. +||+.++||+.++...+++++
T Consensus 741 ~~~~~-------------~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~~-------~sv~~~~wP~~~~~~~d~~~~ 800 (938)
T TIGR00395 741 RGGVN-------------HKDVLARYLETWIKLLAPFAPHFAEEMWEEVGNE-------GFVSLAKFPEASEPAVDKEVE 800 (938)
T ss_pred hCcch-------------HHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCC-------CeEEecCCCCCCcccCCHHHH
Confidence 43221 1247899999999999999999999999999743 699999999988777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeCh
Q psy15223 2376 YKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINK 2415 (2492)
Q Consensus 2376 ~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~ 2415 (2492)
..++.+.+ .++.+|+..+++...+..++|++++
T Consensus 801 ~~~~~~~~-------~i~~iR~~~~~~~~~p~~~~i~~~~ 833 (938)
T TIGR00395 801 AAEEYLRN-------LVRDIQEIAKIDASKPKRVYLYTSE 833 (938)
T ss_pred HHHHHHHH-------HHHHHHHhhccCCCCCcEEEEEECc
Confidence 76665543 3445555566766666677777643
No 43
>KOG0432|consensus
Probab=100.00 E-value=2.6e-127 Score=1191.49 Aligned_cols=764 Identities=24% Similarity=0.381 Sum_probs=661.8
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc-------CCCHHHH
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPIEI 520 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~-------~~~~~e~ 520 (2492)
..+.|.+..|||+++|.||||||++.++.|.++||+||+||.|+|+||+|+.|+.++..|||.+.+ .+++++|
T Consensus 73 ~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F 152 (995)
T KOG0432|consen 73 PGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEF 152 (995)
T ss_pred CCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999998743 6899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccc
Q psy15223 521 QNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEY 600 (2492)
Q Consensus 521 ~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey 600 (2492)
.+++++|.+++-..+.+|+++||.++||+|.++|||+...+.|..+|.+|+++|+|||+.+.|||||..+||+|+.||+|
T Consensus 153 ~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~ 232 (995)
T KOG0432|consen 153 LKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVES 232 (995)
T ss_pred HHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccEEEEEeecCCch---hhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeH
Q psy15223 601 KKKYDFSIYVGFSFSEPE---KIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAF 677 (2492)
Q Consensus 601 ~~~~~~s~yv~f~~~~~~---~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~ 677 (2492)
.|+.++.. +..+-.+.. +..-.+... ..+++..++|+|||||||+|++||||||+++
T Consensus 233 ~ei~~~t~-l~vpGyd~~VeFG~L~~faY~-v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~------------------ 292 (995)
T KOG0432|consen 233 VEIPGRTL-LSVPGYDTKVEFGVLYSFAYP-VEGSDEEIVVATTRPETILGDVAVAVHPDDD------------------ 292 (995)
T ss_pred eecCCCce-EecCCCCcceeeeeeeEEEEe-ccCCCCeEEEecCCccccccceeEEeCCCCc------------------
Confidence 99876542 111111100 000001100 1234559999999999999999999999965
Q ss_pred HhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcC
Q psy15223 678 NLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQN 757 (2492)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~ 757 (2492)
|| ++|.|+.+.|||+ +|.+|||.+.+|++++|||+|+++|||+++||+++++||
T Consensus 293 --------RY------------k~lhGk~~~hP~~------~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~ 346 (995)
T KOG0432|consen 293 --------RY------------KHLHGKFVKHPFT------GRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHN 346 (995)
T ss_pred --------cc------------ccccCceeecCCC------CCccceeecccccccccccceEecCCCChhHHHHHHhcC
Confidence 22 4678999999999 999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCC
Q psy15223 758 MKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKI 837 (2492)
Q Consensus 758 l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~ 837 (2492)
| +.++.++++|.+++.+++|+||++|+||++|++.|++.|++...+......|.|.|||+.|++.+.+|||++++.
T Consensus 347 L---~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~e- 422 (995)
T KOG0432|consen 347 L---EFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKE- 422 (995)
T ss_pred C---CceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHH-
Confidence 9 888999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcchhHHHHHHHHHHhh--cceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHH
Q psy15223 838 PKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKI 915 (2492)
Q Consensus 838 ~~~~~~~~~~~~~~~i~--~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~ 915 (2492)
+.++++++++ +++++|+..++.+..|+++.+|||||||.|||+.||+|+-...+.
T Consensus 423 -------ma~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~---------------- 479 (995)
T KOG0432|consen 423 -------MAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDG---------------- 479 (995)
T ss_pred -------HHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccC----------------
Confidence 9999999998 699999999999999999999999999999999999987532111
Q ss_pred hhcCCccccccCch--------hhcC-CCccCceecCCccccccccccccchhcccCcc---ccCCcCeeeeecccccch
Q psy15223 916 ELNGIEIWQNLDIK--------EFLG-DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK---KQLIFPADLYLEGSDQHR 983 (2492)
Q Consensus 916 ~~~g~~~w~~~~~~--------~~~~-~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~---~~~~~p~Dl~~~G~D~~r 983 (2492)
....+.|.-...+ +..| ...-.+++|+|||||||+||++|+++++++++ ...+||.++.-+|.|+++
T Consensus 480 -~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~sllETG~DILf 558 (995)
T KOG0432|consen 480 -RAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETGHDILF 558 (995)
T ss_pred -CCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCccccccHHhcCCchhhhcCchHHH
Confidence 0112334332211 1121 23345789999999999999999999998762 267899999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhh-----------------------------
Q psy15223 984 GWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN----------------------------- 1034 (2492)
Q Consensus 984 gwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~----------------------------- 1034 (2492)
+|+.+|.+.+.-++|..||++|++||+|.|.+|||||||+||||||.|+|+
T Consensus 559 FWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~ 638 (995)
T KOG0432|consen 559 FWVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQK 638 (995)
T ss_pred HHHHHHHHhhhhhcCCCCchheeechhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999997
Q ss_pred -hc-------ChhhHHHHhhc-cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCcccccccccchHHHHH
Q psy15223 1035 -LF-------GAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSD-FNPNINIIKISDMVEIDKYA 1104 (2492)
Q Consensus 1035 -~y-------GaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~-~~~~~~~~~~~~~~~~D~~i 1104 (2492)
.| |.|+|||.|++ +.-..|+++|...+.....+.+||||..||+++.+.+ |.|............+|+||
T Consensus 639 kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WI 718 (995)
T KOG0432|consen 639 KDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWI 718 (995)
T ss_pred hhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCcchhHHHH
Confidence 34 99999999997 4567899999999999999999999999999997654 66653222222222399999
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccch
Q psy15223 1105 IINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILS 1184 (2492)
Q Consensus 1105 l~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP 1184 (2492)
+++|+..++.+.+.|+.|+|+.|++++++|+..+||+.|++.+|+-+|.+. ...+..|..+|+.+|...+++|+||||
T Consensus 719 lsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~--~~~~~~a~~vL~~~ld~gLrll~PfMP 796 (995)
T KOG0432|consen 719 LSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDS--EALAYEARRVLYRCLDNGLRLLHPFMP 796 (995)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc--HHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999999999999999998753 466788999999999999999999999
Q ss_pred hHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeC
Q psy15223 1185 FTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKIN 1264 (2492)
Q Consensus 1185 ~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~ 1264 (2492)
|+|||+||+|+... .....|+..+.||.....+.+++++..++.+++ +.+.++.+|+...+.++.+..|.+..+
T Consensus 797 FvtEel~qrlP~r~--~~~~~si~va~yP~~~~~~~~~e~E~~~~~v~~----i~~~iRslra~y~l~~~~~~~v~~~~s 870 (995)
T KOG0432|consen 797 FITEELWQRLPRRK--GSKPASISVSPYPSSNELWRNEELESAFELVLA----ITRAIRSLRAEYNLSPKPRGSVFIASS 870 (995)
T ss_pred ccHHHHHHhcccCC--CCCCCceEecCCCchhcccCCHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCceEEEEecC
Confidence 99999999998752 112358999999976667888888888888875 556667889998888755666666543
Q ss_pred -chhHHHHHHhHHHHHHhhhccceEEeecC
Q psy15223 1265 -KLDFEILNEFGEELKFFLLTSSVSLFQIK 1293 (2492)
Q Consensus 1265 -~~~~~~l~~~~~~L~~l~~vs~v~i~~~~ 1293 (2492)
++....++.+.+.|..+..++.|++....
T Consensus 871 ~~~~~~~~~~~~~~i~~l~~~~~v~i~~~~ 900 (995)
T KOG0432|consen 871 DEEDKSILKEFLDEISTLTNLELVSISSPA 900 (995)
T ss_pred CCcchhHHHHHHHHHHHhhccceeEeccCC
Confidence 33456778888889999999999887643
No 44
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.7e-126 Score=1312.23 Aligned_cols=718 Identities=19% Similarity=0.281 Sum_probs=612.8
Q ss_pred ccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhc------------cCCCHHHHHHH--HHHHHHH
Q psy15223 1615 IHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG------------KNLSPIEIQNK--ARALAYE 1680 (2492)
Q Consensus 1615 lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~------------~~~~~~e~~~~--~~~~~~~ 1680 (2492)
|||||++|++++|+++||+||+||+|+|||||||||||||.+|++... .+++.+++.++ |++|+.+
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 799999999999999999999999999999999999999999986421 15677777766 4899999
Q ss_pred HHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceE--
Q psy15223 1681 KIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI-- 1758 (2492)
Q Consensus 1681 ~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~-- 1758 (2492)
+.+.|++||++||+|+||+|+|.|+||.|+++++|+|.+|+++||||||.+||+|||.|+|+|||+|+++++..+++.
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~~~ 160 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEYT 160 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987777775
Q ss_pred EEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1759 yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
||+|+ . +.+.+++||||||||||||+||||||+++|++++.++ +.+|+|+++++++...
T Consensus 161 ~ikf~-~---------------~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~---e~~i~a~~~~~~~~~~-- 219 (897)
T PRK12300 161 LIKFE-E---------------SEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDG---EKWIVSKEAAEKLSFQ-- 219 (897)
T ss_pred EEEEe-C---------------CCceEEEEEECCcchhccceEEEECCCCcEEEEEECC---EEEEEeHHHHHHHhcC--
Confidence 67886 1 1346999999999999999999999999999999753 8899999998887433
Q ss_pred CcCceE-EEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcC--------CC
Q psy15223 1839 FKGNII-GICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQN--------MK 1909 (2492)
Q Consensus 1839 ~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~--------l~ 1909 (2492)
....++ .+++|++|+|++|.||++ ++.+||++++||++++|||+||+|||||++||.++++++ |+
T Consensus 220 ~~~~~~~~~~~G~~l~G~~~~~Pl~------~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~ 293 (897)
T PRK12300 220 DRDVEIIEEIKGSELIGKKVKNPVT------GKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIE 293 (897)
T ss_pred cCCceEEEEeehHHhcCCEEECCCC------CCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccC
Confidence 223444 999999999999999998 789999999999999999999999999999999999998 53
Q ss_pred CCCcc--------------------cccC---------------CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcce
Q psy15223 1910 DSDII--------------------NPVM---------------DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFN 1954 (2492)
Q Consensus 1910 ~~~~~--------------------~~vd---------------~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~ 1954 (2492)
..+++ +++| ++|+|++++|+|+|++|+||++.|++.|+++|.+++
T Consensus 294 ~i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~ 373 (897)
T PRK12300 294 PIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADI 373 (897)
T ss_pred CcceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEE
Confidence 22222 2335 689999999999999999999999999999999999
Q ss_pred eeeeccccccccccCCcEEEee-cccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCccccccc
Q psy15223 1955 IEMFEHSYMHCWRHKTPIIYRT-TLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQR 2033 (2492)
Q Consensus 1955 ~~~~~h~~p~~~R~~~pvi~~~-~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr 2033 (2492)
.+++.| +|+|||||+||++++ ++||||++++ +.||+++++++++|+|+|++.++++.+||+|++||||||||
T Consensus 374 ~~~~~~-~~~~~R~~~~~i~~~~~~QWFi~~~~------~~~k~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr 446 (897)
T PRK12300 374 MYEFSN-RPVYCRCGTECVVKVVKDQWFIDYSD------PEWKELAHKALDNMEIIPEEYRKEFENTIDWLKDRACARRR 446 (897)
T ss_pred EEecCC-CCcCcCCCCEEEEEecCCceEEEcCc------HHHHHHHHHHHccCEEECHHHHHHHHHHHhhhhhcceeecc
Confidence 999988 578889999999986 6999999986 34999999999999999999999999999999999999999
Q ss_pred CCCceeeE---EEECCCCcccCCcHH-HHHHHHHHHhhcCcccccccchhhhcCCCc-cCceecccccccccccCcchhh
Q psy15223 2034 HWGVPIAF---FIHKKSGKLHPKTLE-LIELIAKKIELNGIEIWQNLDIKEFLGDDA-VNYKKSNDTLDVWFDSGITHQT 2108 (2492)
Q Consensus 2034 ~WG~pIP~---~~~~~~~~~~~~~~~-~~~~i~~~~~~~g~~~w~~~~~~~~~~~~~-~~~~~~~dvlDvWfdSg~~~~~ 2108 (2492)
+||||||+ |.++.+. .++.+ .++.+++.+...|.+ ++++.++-. .-+....+++++|++||+++..
T Consensus 447 ~WGtpiP~~~~w~~esl~---ds~iY~~~~~i~~~l~~~g~~------~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~ 517 (897)
T PRK12300 447 GLGTRLPWDEEWIIESLS---DSTIYMAYYTIAHKIREYGIK------PEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEI 517 (897)
T ss_pred ccCCcCCccCCEEeeecc---ccchhhhHHHHHHHHHHcCCC------hHHCChhhCceEEeCCCccccCchhcCCCHHH
Confidence 99999997 4443321 11211 244555555444422 222211100 0112334689999999987765
Q ss_pred hccCCccccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccc-cEEEEeeeEEcCCCceeeeccCCccCcchhhhccC
Q psy15223 2109 VIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFG 2187 (2492)
Q Consensus 2109 ~~~~~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pf-k~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yG 2187 (2492)
..+.+.++++|||+|++++|+||+++|...+++.+.++++..|| +++++|||+++ +|+|||||+||+|+|.+++++||
T Consensus 518 ~~~~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~~yG 596 (897)
T PRK12300 518 LEEMREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEEYG 596 (897)
T ss_pred HHHHHHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHHHcC
Confidence 55555556889999999999999999888888899999999999 89999999998 89999999999999999999999
Q ss_pred hhHHHHHHhc-cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHH
Q psy15223 2188 AEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEIL 2266 (2492)
Q Consensus 2188 aD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~ 2266 (2492)
||++||||++ +++++|++|+++.++.+.+.+++++|+++++.+... . ..+...|+|++++++++++.++
T Consensus 597 aDalRl~L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~----~------~~~~~~D~wils~l~~~i~~v~ 666 (897)
T PRK12300 597 ADVVRLYLTSSAELLQDADWREKEVESVRRQLERFYELAKELIEIGG----E------EELRFIDKWLLSRLNRIIKETT 666 (897)
T ss_pred hHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCC----c------cccCHhHHHHHHHHHHHHHHHH
Confidence 9999999997 689999999999999999999999999998764321 1 1346789999999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2267 SHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2267 ~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
++|++|+|++|++.++.|+++. +|+|++..|+ +++.+++++++.+++||+|||||+|||||+.|+.
T Consensus 667 ~~~e~~~~~~A~~~i~~~l~~~-~n~Yi~~~k~-------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~ 732 (897)
T PRK12300 667 EAMESFQTRDAVQEAFYELLND-LRWYLRRVGE-------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGG 732 (897)
T ss_pred HHHHhcCHHHHHHHHHHHHHHH-HHHHHHhcch-------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC
Confidence 9999999999999998777655 5899987664 5678999999999999999999999999999975
Q ss_pred CCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeC
Q psy15223 2347 KNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKIN 2414 (2492)
Q Consensus 2347 ~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~ 2414 (2492)
. +||+.+.||+.++.+.|++++..++.+. .+.+.+|++|+..+++. ..++|++.
T Consensus 733 ~-------~sv~~~~wP~~~~~~~d~~~~~~~~~~~----~~i~~ir~~~~~~~~~~---~~~~i~~~ 786 (897)
T PRK12300 733 E-------GFVSLEKWPEPDESKIDEEAELAEEYVK----RLIEDIREILKVAKIKP---KKVYIYVA 786 (897)
T ss_pred C-------CeEEeCCCCCCCcccCCHHHHHHHHHHH----HHHHHHHHHHHHcCCCC---ceEEEEEC
Confidence 3 6999999999888777887877777665 46677888888877765 35666553
No 45
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.7e-126 Score=1308.87 Aligned_cols=721 Identities=19% Similarity=0.276 Sum_probs=613.2
Q ss_pred ccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhC------------cCCCHHHHHHH--HHHHHHH
Q psy15223 465 IHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG------------KNLSPIEIQNK--ARALAYE 530 (2492)
Q Consensus 465 lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~------------~~~~~~e~~~~--~~~~a~~ 530 (2492)
|||||++|++++|+++||+||+||+|+|+|||||||||||..|++... .+++.+++.+. |++|+.+
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 799999999999999999999999999999999999999999976321 15677777765 5999999
Q ss_pred HHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEE--
Q psy15223 531 KIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI-- 608 (2492)
Q Consensus 531 ~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~-- 608 (2492)
+.+.|+++|++||+++||+|+|.||||.|+++++|+|.+|+++||||||.+||+|||.|+|+|||+|++|.+..+++.
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~~~ 160 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEYT 160 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987777774
Q ss_pred EEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC
Q psy15223 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 688 (2492)
Q Consensus 609 yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 688 (2492)
||+|+ . +.+.+++||||||||||||+||||||+++|++++.++ +.||+|+++++++..+.
T Consensus 161 ~ikf~-~---------------~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~---e~~i~a~~~~~~~~~~~- 220 (897)
T PRK12300 161 LIKFE-E---------------SEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDG---EKWIVSKEAAEKLSFQD- 220 (897)
T ss_pred EEEEe-C---------------CCceEEEEEECCcchhccceEEEECCCCcEEEEEECC---EEEEEeHHHHHHHhcCc-
Confidence 78887 1 1257999999999999999999999999999999865 89999999999885442
Q ss_pred CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcC--------CCC
Q psy15223 689 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQN--------MKD 760 (2492)
Q Consensus 689 ~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~--------l~~ 760 (2492)
.+..++.+++|++|+|++|.|||+ ++.+||++++||++++|||+||+|||||++||.++++++ |+.
T Consensus 221 ~~~~~~~~~~G~~l~G~~~~~Pl~------~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~ 294 (897)
T PRK12300 221 RDVEIIEEIKGSELIGKKVKNPVT------GKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEP 294 (897)
T ss_pred CCceEEEEeehHHhcCCEEECCCC------CCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCC
Confidence 123345999999999999999998 789999999999999999999999999999999999998 533
Q ss_pred CCcc--------------------cccC---------------CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeee
Q psy15223 761 SDII--------------------NPVM---------------DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNI 805 (2492)
Q Consensus 761 ~~~~--------------------~~vd---------------~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~ 805 (2492)
.+++ +++| ++|+|++++|+|+|++|++|++.|++.|+++|.+++.
T Consensus 295 i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~ 374 (897)
T PRK12300 295 IPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIM 374 (897)
T ss_pred cceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEE
Confidence 2222 2335 6999999999999999999999999999999999999
Q ss_pred eeeccccccccccCCcEEEee-cccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeecccc
Q psy15223 806 EMFEHSYMHCWRHKTPIIYRT-TLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRH 884 (2492)
Q Consensus 806 ~~~~h~yp~~wR~~~pvi~r~-t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~ 884 (2492)
+++.| +|+|||||+|||+++ ++||||++++ +.||+++++++++++|+|++.++++.+||+|++||||||||+
T Consensus 375 ~~~~~-~~~~~R~~~~~i~~~~~~QWFi~~~~------~~~k~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~ 447 (897)
T PRK12300 375 YEFSN-RPVYCRCGTECVVKVVKDQWFIDYSD------PEWKELAHKALDNMEIIPEEYRKEFENTIDWLKDRACARRRG 447 (897)
T ss_pred EecCC-CCcCcCCCCEEEEEecCCceEEEcCc------HHHHHHHHHHHccCEEECHHHHHHHHHHHhhhhhcceeeccc
Confidence 98888 678889999999996 5999999985 349999999999999999999999999999999999999999
Q ss_pred CCceeeE---EEECCCCccccCcHHHHHHHHHHHhhcCCccccccCchhhcCCCc-cCceecCCccccccccccccchhc
Q psy15223 885 WGVPIAF---FIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDA-VNYKKSNDTLDVWFDSGITHQTVI 960 (2492)
Q Consensus 885 WGvpIP~---~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~~~~~~~-~~~~~~~dvlDvWfdSg~~~~~~~ 960 (2492)
||||||+ |.++.+.... ....+..++..+...|.+ ++++.++-. ..+....+++++|++||+++....
T Consensus 448 WGtpiP~~~~w~~esl~ds~--iY~~~~~i~~~l~~~g~~------~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~ 519 (897)
T PRK12300 448 LGTRLPWDEEWIIESLSDST--IYMAYYTIAHKIREYGIK------PEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILE 519 (897)
T ss_pred cCCcCCccCCEEeeeccccc--hhhhHHHHHHHHHHcCCC------hHHCChhhCceEEeCCCccccCchhcCCCHHHHH
Confidence 9999996 6665443210 012244455444544432 222221100 012233468999999998776554
Q ss_pred ccCccccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCc-eEEEEeeEEEcCCCccccccCCCccCcchhhhhcChh
Q psy15223 961 RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAE 1039 (2492)
Q Consensus 961 ~~~~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~-k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD 1039 (2492)
..+.++++|||+|+|++|+||+|+|....++.+.++.+..|| +++++|||+++ +|+|||||+||+|+|.+++++||+|
T Consensus 520 ~~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~~yGaD 598 (897)
T PRK12300 520 EMREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEEYGAD 598 (897)
T ss_pred HHHHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHHHcChH
Confidence 444456789999999999999999877778889999999999 89999999998 8999999999999999999999999
Q ss_pred hHHHHhhc-cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHH
Q psy15223 1040 ILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSH 1118 (2492)
Q Consensus 1040 ~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a 1118 (2492)
++|||+++ +++.+|++|+++.++.+.+.++|++|+++++.+.... ..+...|+|++++++++++++.++
T Consensus 599 alRl~L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~~----------~~~~~~D~wils~l~~~i~~v~~~ 668 (897)
T PRK12300 599 VVRLYLTSSAELLQDADWREKEVESVRRQLERFYELAKELIEIGGE----------EELRFIDKWLLSRLNRIIKETTEA 668 (897)
T ss_pred HHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCc----------cccCHhHHHHHHHHHHHHHHHHHH
Confidence 99999997 6899999999999999999999999999987653211 134678999999999999999999
Q ss_pred HhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCC
Q psy15223 1119 YRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKN 1198 (2492)
Q Consensus 1119 ~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~ 1198 (2492)
|++|+|++|++.++.|++++ +|+|++..|+ +++.+++++++.++++|+||+||+|||+|+.|+..
T Consensus 669 ~e~~~~~~A~~~i~~~l~~~-~n~Yi~~~k~-------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~- 733 (897)
T PRK12300 669 MESFQTRDAVQEAFYELLND-LRWYLRRVGE-------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE- 733 (897)
T ss_pred HHhcCHHHHHHHHHHHHHHH-HHHHHHhcch-------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC-
Confidence 99999999999998777665 5899997765 57889999999999999999999999999999743
Q ss_pred ccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCc
Q psy15223 1199 FYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINK 1265 (2492)
Q Consensus 1199 ~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~ 1265 (2492)
+||+++.||+.++...+..++..++.+.++...+ +.+|+..+++. ..++|.+.+
T Consensus 734 ------~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~i----r~~~~~~~~~~---~~~~i~~~~ 787 (897)
T PRK12300 734 ------GFVSLEKWPEPDESKIDEEAELAEEYVKRLIEDI----REILKVAKIKP---KKVYIYVAP 787 (897)
T ss_pred ------CeEEeCCCCCCCcccCCHHHHHHHHHHHHHHHHH----HHHHHHcCCCC---ceEEEEECC
Confidence 6999999999877666777877788777655554 45666665644 356666543
No 46
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=6.8e-123 Score=1281.63 Aligned_cols=730 Identities=18% Similarity=0.262 Sum_probs=606.6
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhC------------cCC
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG------------KNL 515 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~------------~~~ 515 (2492)
++++|++++|||||||.|||||++|++++|+++||+||+||+|+|+|||||||+|||..|++... .++
T Consensus 23 ~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i 102 (938)
T TIGR00395 23 DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAI 102 (938)
T ss_pred CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccC
Confidence 47899999999999999999999999999999999999999999999999999999999988431 157
Q ss_pred CHHHHHHHH--HHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccc
Q psy15223 516 SPIEIQNKA--RALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSAL 593 (2492)
Q Consensus 516 ~~~e~~~~~--~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taL 593 (2492)
++++|.+.| ++|+.++.+.++++|++||+++||+|+|.||||.|.++++|+|.+|+++|+||++.+||+|||.|+|+|
T Consensus 103 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g~~~v~wcp~~~t~l 182 (938)
T TIGR00395 103 PREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNPV 182 (938)
T ss_pred CHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecCCeeEeecCCCCCCC
Confidence 899999998 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceec--cEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCc
Q psy15223 594 AEAEIEYKKKYD--FSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPL 671 (2492)
Q Consensus 594 ae~Evey~~~~~--~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~ 671 (2492)
||+|++|.+..+ ..+||+|++.+ .+.+++||||||||||||+||||||+++|++++.++ +
T Consensus 183 sd~e~~~~e~~~~~~~~~ikf~~~~---------------~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~---e 244 (938)
T TIGR00395 183 EDHDLLSGEGVTIVEYILIKFELED---------------GAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGG---E 244 (938)
T ss_pred chhHhccCCccccceEEEEEEEcCC---------------CceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCC---c
Confidence 999999987655 55889998753 136899999999999999999999999999999876 8
Q ss_pred eeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHH
Q psy15223 672 LLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFL 751 (2492)
Q Consensus 672 ~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~ 751 (2492)
.||+++++++++..+ +.....+.+++|++|.|++|.||+. ++++||++++||++++|||+||++||||++||.
T Consensus 245 ~~i~s~~~~~~~~~q-~~~~~~~~~~~g~~l~G~~~~~P~~------~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~ 317 (938)
T TIGR00395 245 KWITSKEAFENLSYQ-KLKYKPIEEVPGKQFIGKKVHNPVV------GPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYI 317 (938)
T ss_pred EEEEeHHHHHhhhhc-ccceeEEEEEchHhccCCEEECCCC------CCeeEEeecceeecCCCcceEEeCCCCCHHHHH
Confidence 999999999998654 2333455999999999999999997 889999999999999999999999999999999
Q ss_pred HHHHc-------CCCC----CCccc--ccCC-------------------------------------CCcccccCCCCC
Q psy15223 752 IFKKQ-------NMKD----SDIIN--PVMD-------------------------------------DGNFISTLPLFG 781 (2492)
Q Consensus 752 ~~~~~-------~l~~----~~~~~--~vd~-------------------------------------~G~~~~~~~~~~ 781 (2492)
+++++ |+.. -++++ ++|+ +|+|+++++.|+
T Consensus 318 ~~~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~ 397 (938)
T TIGR00395 318 ALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYK 397 (938)
T ss_pred HHHHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccC
Confidence 98863 3321 02222 3332 466677778999
Q ss_pred CcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEe-ecccceeecCCCCcchhHHHHHHHHHHhhcceEec
Q psy15223 782 GMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYR-TTLQWFINMDKIPKNEKKSLRESAITAINKIKFFP 860 (2492)
Q Consensus 782 G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r-~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P 860 (2492)
|++|++|++.|++.|++.|.+++.+++.| +|+|||||+||+++ +++||||++++ ++||+++++++++++|+|
T Consensus 398 G~~v~ear~~i~~~L~~~g~~~~~~~~~~-~~v~~R~g~~~vv~~~~~QWFi~~~~------~~~k~~~~~~l~~~~~~P 470 (938)
T TIGR00395 398 GMKVSEAKEKVKADLIDAGLADVMYEFSE-SPVICRCGTDCIVKVVEDQWFVKYSD------ESWKELAHECLEGMRIIP 470 (938)
T ss_pred CcCHHHhHHHHHHHHHHCCCceEeeecCC-CCcEecCCCeEEEeccCCCCeEEcCc------HHHHHHHHHHHhcCEEeC
Confidence 99999999999999999999999877754 57789999999998 99999999996 459999999999999999
Q ss_pred chhhHHHHHHHhcCCCeeeeccccCCceeeE---EEECCCCccccCcH-HHHHHHHHHHhhcCCccccccCchhhcCCCc
Q psy15223 861 SWGKDRLKSMILNRPDWTISRQRHWGVPIAF---FIHKKSGKLHPKTL-ELIELIAKKIELNGIEIWQNLDIKEFLGDDA 936 (2492)
Q Consensus 861 ~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~---~~~~~~~~~~~~~~-~~i~~~~~~~~~~g~~~w~~~~~~~~~~~~~ 936 (2492)
+..++++.+||+|++||||||||+||||||+ |+++.... .+. ..+..++..+...+.+.+
T Consensus 471 ~~~~~~~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ieslsd---stiY~~~~~i~~~l~~~~~~~~------------- 534 (938)
T TIGR00395 471 EEVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSD---STIYMAYYTIAHYLNKDYYGNE------------- 534 (938)
T ss_pred HHHHHHHHHHHhhhhhcccccccccCcccceeecEEeeecch---hhhhhhhccHHHHhhccCCChH-------------
Confidence 9999999999999999999999999999996 33332110 000 112233333332222111
Q ss_pred cCceecCCcccccccc-------ccccchhcccCccccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCc-eEEEEe
Q psy15223 937 VNYKKSNDTLDVWFDS-------GITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTH 1008 (2492)
Q Consensus 937 ~~~~~~~dvlDvWfdS-------g~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~-k~v~~h 1008 (2492)
++ ..+++|.||++ |++.......+.++++|||+|+|++|+||+|+|....++.+.++.+..|| +.+++|
T Consensus 535 -~l--~~ev~D~~~~~~~~~~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~ 611 (938)
T TIGR00395 535 -QM--TDEFFDYIFLGKGDVKNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVN 611 (938)
T ss_pred -HC--CcccCceEEECCCChhhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEe
Confidence 11 23455555543 33222111123345789999999999999999988889999999888888 899999
Q ss_pred eEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15223 1009 GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNP 1087 (2492)
Q Consensus 1009 G~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~ 1087 (2492)
||+++ +|+|||||+||+|+|.+++++||+|++||||++ +++++|++|+++.+.++.+.+.+++|++++++.... +
T Consensus 612 G~vl~-~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~---~ 687 (938)
T TIGR00395 612 GYVML-EGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKESN---L 687 (938)
T ss_pred ceEEe-CCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcc---c
Confidence 99996 899999999999999999999999999999997 489999999999999999999999999988765432 1
Q ss_pred CcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHH-HHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHH
Q psy15223 1088 NINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIV-SKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQT 1166 (2492)
Q Consensus 1088 ~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~-~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~ 1166 (2492)
.. .......|+|++++++++++++.++|++|+|++|+ ..+++|++. +++|++..+++ ...
T Consensus 688 ~~----~~~~~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~--~n~Yl~~~~~~-------------~~~ 748 (938)
T TIGR00395 688 ET----GEETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQAD--VDWYRRRGGVN-------------HKD 748 (938)
T ss_pred CC----CccCChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--HHHHHHhCcch-------------HHH
Confidence 10 01245789999999999999999999999999999 778999854 79998743221 234
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15223 1167 SIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIR 1246 (2492)
Q Consensus 1167 ~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R 1246 (2492)
+++++++.+++||+|||||+|||||+.|+.. +||+++.||+.++...+..++..++.+.++..+ .|
T Consensus 749 ~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~~-------~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~-------iR 814 (938)
T TIGR00395 749 VLARYLETWIKLLAPFAPHFAEEMWEEVGNE-------GFVSLAKFPEASEPAVDKEVEAAEEYLRNLVRD-------IQ 814 (938)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHcCCC-------CeEEecCCCCCCcccCCHHHHHHHHHHHHHHHH-------HH
Confidence 7999999999999999999999999999643 699999999977665566777777776655433 44
Q ss_pred hhCCCCCCcceEEEEEeCc
Q psy15223 1247 STGIIGSSLQAEIILKINK 1265 (2492)
Q Consensus 1247 ~~k~i~~s~~a~v~i~~~~ 1265 (2492)
+...+.......++|.+.+
T Consensus 815 ~~~~~~~~~p~~~~i~~~~ 833 (938)
T TIGR00395 815 EIAKIDASKPKRVYLYTSE 833 (938)
T ss_pred HhhccCCCCCcEEEEEECc
Confidence 4455555444567776654
No 47
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=1.5e-120 Score=1240.82 Aligned_cols=667 Identities=25% Similarity=0.382 Sum_probs=547.1
Q ss_pred cccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccC
Q psy15223 1570 GELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCH 1649 (2492)
Q Consensus 1570 a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~h 1649 (2492)
+++.++|++||++|+++++|++.. +.++++|++++|||||||.|||||++||+++||++||+||+||+|+|+||||||
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~--~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~ 78 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTD--DSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAF 78 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCC--CCCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCC
Confidence 367789999999999999998743 356788999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1650 GMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1650 GlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
|||||.+|++. +++|.+ |+.++++.|++||++||+++||+++|.|+||+|+++++|+|.+|+++||||++
T Consensus 79 Glpie~~a~~~---g~~p~~-------~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~ 148 (842)
T TIGR00396 79 GLPAENAAIKR---GIHPAK-------WTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVK 148 (842)
T ss_pred ChHHHHHHHHc---CCCHHH-------HHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEee
Confidence 99999999876 778765 89999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCccccccccccee---eec--------ceEEEEEec-----cC--------chhh----HhhhccCCC--
Q psy15223 1730 LKPVNWCFDCKSALAEAEIEYKK---KYD--------FSIYVGFSF-----SE--------PEKI----KSIFNLKNL-- 1779 (2492)
Q Consensus 1730 ~~~v~wcp~~~t~Lad~Evey~~---~~~--------~~~yv~f~~-----~~--------~~~~----~~~~~~~~~-- 1779 (2492)
.++|+|||.|+|+|||+||++.. ..+ .++|+++.- .+ ++.+ .++++.+.+
T Consensus 149 ~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g~~ 228 (842)
T TIGR00396 149 EADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVE 228 (842)
T ss_pred ccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccccceEE
Confidence 99999999999999999995422 111 233444221 00 0000 011111110
Q ss_pred -----CCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCC----cCceEEEEecc
Q psy15223 1780 -----PSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF----KGNIIGICKGI 1850 (2492)
Q Consensus 1780 -----~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~----~~~~v~~~~G~ 1850 (2492)
.+.+.+++||||||||||||+||||||+++|+.+.... .+.++.+.+.... +...+.+.+|.
T Consensus 229 i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~g 299 (842)
T TIGR00396 229 ITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAEN---------NPKVAAFIKKILQKTTTERTKETKLKKG 299 (842)
T ss_pred EEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcc---------hHHHHHHHHHHhccCchhhhhhhccccc
Confidence 12245899999999999999999999999998764221 2234444443321 11222456777
Q ss_pred cccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC------------
Q psy15223 1851 KLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM------------ 1918 (2492)
Q Consensus 1851 ~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd------------ 1918 (2492)
.|.|++|.||++ ++.+||+.++||++++|||+||+|||||++||++|++||| ++++++|
T Consensus 300 ~~~g~~~~~P~~------~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L---~i~~vi~~~~~~~~~~~~~ 370 (842)
T TIGR00396 300 VFTGIKAIHPLT------GEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKL---PIKVVIDPAGKNLKTQAFT 370 (842)
T ss_pred EecCCEEECCCC------CCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCC---CcceeeCCccccccccccc
Confidence 899999999998 8999999999999999999999999999999999999999 7778887
Q ss_pred CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1919 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1919 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
++|+|++ .+.|.|+++.+|++.|++.|+++|.+. .++.+
T Consensus 371 ~~G~~~~-~~~~~Gl~~~~A~~~Ii~~L~~~g~~~----------------~~v~y------------------------ 409 (842)
T TIGR00396 371 EDGVLVN-SGEFNGLNSSEAREAIIAMLEKEGKGK----------------RKVNY------------------------ 409 (842)
T ss_pred CCceEec-chhcCCCCHHHHHHHHHHHHHHcCCCC----------------ceEEe------------------------
Confidence 4788875 488999999999999999999999742 12211
Q ss_pred HHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcc-------
Q psy15223 1999 AITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE------- 2071 (2492)
Q Consensus 1999 ~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~------- 2071 (2492)
+++|||||||||||+|||+|||++|+.+++...+++.++++.+...|.+
T Consensus 410 ------------------------rlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~ 465 (842)
T TIGR00396 410 ------------------------RLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRI 465 (842)
T ss_pred ------------------------ecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhh
Confidence 2469999999999999999999999986556667777777666544422
Q ss_pred -cccccchhhhcCCCccCceecccccccccccCcchhhhccCCc--------cccCCcCceeeecccchh-------hhh
Q psy15223 2072 -IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH--------KKQLIFPADLYLEGSDQH-------RGW 2135 (2492)
Q Consensus 2072 -~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~--------~~~~~~P~Dl~~~G~D~~-------r~w 2135 (2492)
.|.+..+ |.++..+.|++|||||||||||++.+++.... .+++|||+|+|++|.||+ |||
T Consensus 466 ~~~~~~~c----p~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~ 541 (842)
T TIGR00396 466 QEWVNVTC----PSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFW 541 (842)
T ss_pred hhhhcCcC----ccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHH
Confidence 3443332 33355799999999999999988887664322 236799999999999995 776
Q ss_pred HHHHHHHHHHhcCCccccEEEEeeeEEc----CCCc---------------------------eeeeccCCccCcchhhh
Q psy15223 2136 FHSSLLTSIILNKSAPYKALLTHGFVVD----SKGK---------------------------KMSKSKGNIIKPQKLCN 2184 (2492)
Q Consensus 2136 f~~~l~~~~~l~~~~pfk~v~~hG~vld----~~G~---------------------------KMSKS~GNvi~p~~ii~ 2184 (2492)
|++|....++.+++||++|++||||+| ++|+ |||||+||+|+|.++++
T Consensus 542 -~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~ 620 (842)
T TIGR00396 542 -HKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVK 620 (842)
T ss_pred -HHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHH
Confidence 477777777889999999999999999 8999 99999999999999999
Q ss_pred ccChhHHHHHHhc-cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHH
Q psy15223 2185 LFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQK 2263 (2492)
Q Consensus 2185 ~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~ 2263 (2492)
+||+|++|||+++ +++++|++|+++.++++.++++||||+++++++++.++.. .....+...|+|++++++++++
T Consensus 621 ~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~----~~~~~l~~~d~~il~~l~~~i~ 696 (842)
T TIGR00396 621 KHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDGKTY----LTPTILEEAQKELRRDVHKFLK 696 (842)
T ss_pred HcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhccccc----CCcccCCHHHHHHHHHHHHHHH
Confidence 9999999999995 6899999999999999999999999999998777654321 1112346789999999999999
Q ss_pred HHHHHHhccc-HHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q psy15223 2264 EILSHYRMYE-FHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWS 2342 (2492)
Q Consensus 2264 ~v~~a~e~~~-f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~ 2342 (2492)
+++++|++|+ |++|++.+++|++ +|++. . + ..++++++..+++|||||+||+|||||+
T Consensus 697 ~v~~~~e~y~~fn~ai~~l~~f~n-~L~~~-~---~----------------~~~l~~~l~~ll~lLaPf~PhiaEElW~ 755 (842)
T TIGR00396 697 KVTEDLEKLESFNTAISAMMILLN-ALYKA-K---K----------------DALYLEYLKGFLTVLSPFAPHLAEELWE 755 (842)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHH-HHHhh-h---h----------------HHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999988 9999999999994 55531 0 0 1368999999999999999999999999
Q ss_pred HcccCCccccCCCCeeeccCCCCCc
Q psy15223 2343 IFSDKNFYIESGETIFTQLHYKLPK 2367 (2492)
Q Consensus 2343 ~L~~~~~~~~~~~sV~~~~wP~~~~ 2367 (2492)
.|+.. ..||+.++||+.++
T Consensus 756 ~l~~~------~~sv~~~~wP~~d~ 774 (842)
T TIGR00396 756 KLGSE------PFIIKQAKWPKVDE 774 (842)
T ss_pred HhCCC------CCeeecCCCCCCCH
Confidence 99743 25899999998654
No 48
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.5e-120 Score=1232.86 Aligned_cols=688 Identities=20% Similarity=0.303 Sum_probs=536.1
Q ss_pred ceeeccchhhhhhhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCc-ccchHhhhhHHHHHHHHHH
Q psy15223 1555 LRTETASLVALAILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGD-IHIGHAVNKILKDIIVKFY 1633 (2492)
Q Consensus 1555 LR~ETA~~~~~~~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~-lHlGH~~~~~~~Dii~Ry~ 1633 (2492)
++++++.--......+++.++|++||++|+++++|+...+.+.++++|++++|||||||. |||||++||+++|+++||+
T Consensus 65 ~~~~~~~~~~~~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~ 144 (963)
T PLN02563 65 LTSTTAKTTPAAKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYK 144 (963)
T ss_pred hhhhhhhcccccCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHH
Confidence 344444333333456889999999999999999998754335678899999999999997 9999999999999999999
Q ss_pred HHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHH
Q psy15223 1634 NMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANE 1713 (2492)
Q Consensus 1634 rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~ 1713 (2492)
||+||+|+|+|||||||||||.+|.+. +..|.+ ++.++++.|++||++||+++||+++|.|+||+|++++
T Consensus 145 Rm~G~~Vl~~~G~D~~GlPiE~~a~~~---g~~p~~-------~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~ 214 (963)
T PLN02563 145 RMQGYNVLHPMGWDAFGLPAEQYAIET---GTHPKI-------TTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWT 214 (963)
T ss_pred HhcCCeecccccccccCcHHHHHHHHc---CCChHH-------hHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHH
Confidence 999999999999999999999998775 566654 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEeCcccccCCCCCcccccccccce-eeecceEEEEEeccC---------------------chhh-
Q psy15223 1714 LRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYK-KKYDFSIYVGFSFSE---------------------PEKI- 1770 (2492)
Q Consensus 1714 ~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~-~~~~~~~yv~f~~~~---------------------~~~~- 1770 (2492)
||+|.+|+++|||||+.++|+|||.|+|+||++||++. ...+.+.++++++.. ++.+
T Consensus 215 q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~ 294 (963)
T PLN02563 215 QWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIK 294 (963)
T ss_pred HHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHH
Confidence 99999999999999999999999999999999999874 122333223322210 0000
Q ss_pred ---HhhhccCCC-------CC-----CccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCC---ceehhhHHhHHH
Q psy15223 1771 ---KSIFNLKNL-------PS-----GKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPP---LLLILAFNLVKS 1832 (2492)
Q Consensus 1771 ---~~~~~~~~~-------~~-----~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~---~~~i~a~~~~~~ 1832 (2492)
.+++|.+.+ .+ .+.+++||||||||||||+||||||+++|+.+.+..+.. +.|+.+......
T Consensus 295 ~~q~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~ 374 (963)
T PLN02563 295 EMQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSD 374 (963)
T ss_pred HHHHHhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhH
Confidence 011111110 01 246899999999999999999999999998654322111 122222222222
Q ss_pred HHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCC
Q psy15223 1833 CLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSD 1912 (2492)
Q Consensus 1833 ~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~ 1912 (2492)
+. +. .....++..+.|+++.||++ ++++||+.++||++++|||+||+|||||++||++|++||| +
T Consensus 375 ~~-~~-----~~~~~k~g~~~g~~~~~P~~------~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~L---p 439 (963)
T PLN02563 375 LE-RT-----ELQKEKTGVFTGSYAINPAT------GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDL---P 439 (963)
T ss_pred Hh-hh-----hccceecccccCcEEeccCC------CCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCC---C
Confidence 21 11 11244666799999999998 8899999999999999999999999999999999999999 6
Q ss_pred cccccC---C-----------CCccccCCCC----CCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEE
Q psy15223 1913 IINPVM---D-----------DGNFISTLPL----FGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIY 1974 (2492)
Q Consensus 1913 ~~~~vd---~-----------~G~~~~~~~~----~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~ 1974 (2492)
++++|+ + +|++.+ .+. |.|+.+++|++.|++.|+++|.+.+ +
T Consensus 440 i~~vI~~~d~~~~~~~~~y~~~G~l~n-s~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~----------------~--- 499 (963)
T PLN02563 440 IKWVVKPADGNEDDAEKAYTGEGVIVN-SSSSGLDINGLSSKEAAKKVIEWLEETGNGKK----------------K--- 499 (963)
T ss_pred ceeeeccCccccccccccccCceeEec-CCCcccccCCcCHHHHHHHHHHHHHhCCCCCC----------------e---
Confidence 666662 2 344432 243 9999999999999999999997521 1
Q ss_pred eecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCccc-CC
Q psy15223 1975 RTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLH-PK 2053 (2492)
Q Consensus 1975 ~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~-~~ 2053 (2492)
++| +++|||||||||||+|||+|+|++||+.. +.
T Consensus 500 -------------------------------v~y--------------~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~ 534 (963)
T PLN02563 500 -------------------------------VNY--------------KLRDWLFARQRYWGEPIPVVFLEDSGEPVPVP 534 (963)
T ss_pred -------------------------------eEe--------------cCCCceEeeecccCCceEEEEEcCCCcEEecc
Confidence 222 36899999999999999999999998533 33
Q ss_pred cHHHHHHHHH--HHhhcCcccccccchhhh----cCCCccCceecccccccccccCcchhhhccCCcc--------ccCC
Q psy15223 2054 TLELIELIAK--KIELNGIEIWQNLDIKEF----LGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK--------KQLI 2119 (2492)
Q Consensus 2054 ~~~~~~~i~~--~~~~~g~~~w~~~~~~~~----~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~--------~~~~ 2119 (2492)
.++++..+++ .+...|...|.-....++ ++.++..+.||+|||||||||+|++.++..+.+. .++|
T Consensus 535 e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w 614 (963)
T PLN02563 535 ESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYW 614 (963)
T ss_pred hHhCcccchhhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCc
Confidence 3345544442 222234333332222233 2334567999999999999999998887754421 1479
Q ss_pred cCceeeecccchh-------hhhHHHHHHHHHHhcCCccccEEEEeeeEEc---------CCCc----------------
Q psy15223 2120 FPADLYLEGSDQH-------RGWFHSSLLTSIILNKSAPYKALLTHGFVVD---------SKGK---------------- 2167 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~-------r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld---------~~G~---------------- 2167 (2492)
||+|+|++|.||+ ||||++++..++ +.+++||+++++||||+| .+|+
T Consensus 615 ~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~-~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~ 693 (963)
T PLN02563 615 MPVDLYVGGAEHAVLHLLYARFWHKVLYDIGV-VSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQE 693 (963)
T ss_pred CCCcEeeccHHHHhhHhHHHHHHHHHHHHhhc-cCCcccHHHHhccceeecCccccceecCCCcCccccccccccccccc
Confidence 9999999999995 999999988887 578999999999999998 7777
Q ss_pred -----------------------------eeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHHH
Q psy15223 2168 -----------------------------KMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVET 2217 (2492)
Q Consensus 2168 -----------------------------KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~ 2217 (2492)
|||||+||+|+|.++|++||||+||||+++ ++..+|..|+.+.++.+.++
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rf 773 (963)
T PLN02563 694 KIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRF 773 (963)
T ss_pred ccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHH
Confidence 999999999999999999999999999996 56778899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhh
Q psy15223 2218 YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDIL 2297 (2492)
Q Consensus 2218 ~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~ 2297 (2492)
++++||++.....+...+.+. ... .....|+|+++++++++++++++|++|+|++|++++|+|++ .+++++
T Consensus 774 L~rlwn~~~~~~~~~~~~~~~--~~~--~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n-~l~~~~---- 844 (963)
T PLN02563 774 LGRTWRLVVGAPLPDGSFRDG--TVV--TDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTN-AAYKWD---- 844 (963)
T ss_pred HHHHHHHHHHhhhcccccCcc--ccc--cCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhCch----
Confidence 999999876542111112111 011 11246899999999999999999999999999999999995 343210
Q ss_pred hhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCc
Q psy15223 2298 KDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPK 2367 (2492)
Q Consensus 2298 K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~ 2367 (2492)
...+++++.+++||+|||||+|||||+.|+.. +||+.++||++++
T Consensus 845 ------------------~~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~~-------~sv~~~~WP~~d~ 889 (963)
T PLN02563 845 ------------------KVPREAIEPFVLLLSPYAPHLAEELWFRLGHS-------NSLAYEPWPEANP 889 (963)
T ss_pred ------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHcCCC-------CeeeeCCCCCCCH
Confidence 13467899999999999999999999999753 6899999998654
No 49
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.3e-119 Score=1231.72 Aligned_cols=666 Identities=23% Similarity=0.345 Sum_probs=545.7
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
+++++.++|++||++|+++++|++..+ .+++|++++|||||||.|||||++|++++||++||+||+||+|+|++|||
T Consensus 3 ~~y~~~~iE~~w~~~W~~~~~f~~~~~---~~~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 79 (805)
T PRK00390 3 ERYNPKEIEKKWQKYWEENKTFKTTED---SSKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 79 (805)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCcc---CCCCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccC
Confidence 467899999999999999999987432 33479999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceE
Q psy15223 1648 CHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 1727 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliy 1727 (2492)
|||+|||.+|++. +++|. +|+.++++.|++||++||+++||+++|.|+||+|+++++|+|.+|+++|+||
T Consensus 80 ~~Glpie~~a~~~---g~~~~-------~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 149 (805)
T PRK00390 80 AFGLPAENAAIKT---GTHPA-------EWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAY 149 (805)
T ss_pred CCCCHHHHHHHHc---CCCHH-------HHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEE
Confidence 9999999999876 67765 4999999999999999999999999999999999999999999999999999
Q ss_pred EeCcccccCCCCCccccccccccee-eecceEEEEE-------eccCch---------------hhH----hhhccCC--
Q psy15223 1728 HGLKPVNWCFDCKSALAEAEIEYKK-KYDFSIYVGF-------SFSEPE---------------KIK----SIFNLKN-- 1778 (2492)
Q Consensus 1728 r~~~~v~wcp~~~t~Lad~Evey~~-~~~~~~yv~f-------~~~~~~---------------~~~----~~~~~~~-- 1778 (2492)
++.++|+|||.|+|+|||+||+... ..+.+.++++ ++.+.. .++ ++++...
T Consensus 150 ~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~ 229 (805)
T PRK00390 150 RKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGA 229 (805)
T ss_pred EecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceE
Confidence 9999999999999999999997532 2233333332 221110 000 0111000
Q ss_pred -----CCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceE-EEEecccc
Q psy15223 1779 -----LPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNII-GICKGIKL 1852 (2492)
Q Consensus 1779 -----~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v-~~~~G~~l 1852 (2492)
..+.+.+++||||||||||||+||||||+++|+.+..++ . ..+++++++..+..+.+...+ .+++|. |
T Consensus 230 ~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l 303 (805)
T PRK00390 230 EVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQ---N--PAVAAFIEECKKKSDLERQTETKEKTGV-F 303 (805)
T ss_pred EEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcc---h--HHHHHHHHHHhhhcchhhhhcccceeee-e
Confidence 011246899999999999999999999999998776432 1 124455555444443333322 688997 9
Q ss_pred cccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCC-------------
Q psy15223 1853 SKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD------------- 1919 (2492)
Q Consensus 1853 ~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~------------- 1919 (2492)
.|++|.||++ ++++||+.++||++++|||+||+|||||++||+++++||| ++++++|.
T Consensus 304 ~g~~~~~P~~------~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L---~~~~~i~~~g~~~~~~~~~~~ 374 (805)
T PRK00390 304 TGLYAIHPLT------GEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGL---PIKPVIEPGDGDEDISEEAYT 374 (805)
T ss_pred cCcEEECCCC------CCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCC---CceeeeCCCCccccccccccc
Confidence 9999999998 8899999999999999999999999999999999999999 77777764
Q ss_pred -CCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1920 -DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1920 -~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
+|+|++. +.|+|+++++|++.|++.|++.|.+ +.++.+
T Consensus 375 ~~g~~~~~-~~~~Gl~~~~a~~~Ii~~L~~~g~~----------------~~~v~~------------------------ 413 (805)
T PRK00390 375 GDGVLINS-GELDGLDSEEAKEAIIAWLEEKGLG----------------KRKVNY------------------------ 413 (805)
T ss_pred CCeEEEec-cccCCCCHHHHHHHHHHHHHHcCCC----------------CCceEE------------------------
Confidence 4555433 7899999999999999999999873 122221
Q ss_pred HHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccch
Q psy15223 1999 AITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDI 2078 (2492)
Q Consensus 1999 ~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~ 2078 (2492)
+++|||||||||||+|||+|+|++||.+.+...+++.++++.+...|.+.|+...
T Consensus 414 ------------------------~l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~- 468 (805)
T PRK00390 414 ------------------------RLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKH- 468 (805)
T ss_pred ------------------------ECCCccccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhc-
Confidence 1469999999999999999999999976666677777777766667766666433
Q ss_pred hhhc----CCCccCceecccccccccccCcchhhhccCC--------ccccCCcCceeeecccchh-------hhhHHHH
Q psy15223 2079 KEFL----GDDAVNYKKSNDTLDVWFDSGITHQTVIRGS--------HKKQLIFPADLYLEGSDQH-------RGWFHSS 2139 (2492)
Q Consensus 2079 ~~~~----~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~--------~~~~~~~P~Dl~~~G~D~~-------r~wf~~~ 2139 (2492)
.+++ +.++..++|++|||||||||||++..+.... +.+++|||+|+|++|.||+ |+| ++.
T Consensus 469 ~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~-~~~ 547 (805)
T PRK00390 469 PEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFF-TKV 547 (805)
T ss_pred hhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHH-HHH
Confidence 2332 2235679999999999999997766554332 2336889999999999998 544 444
Q ss_pred HHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHHHH
Q psy15223 2140 LLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETY 2218 (2492)
Q Consensus 2140 l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~~ 2218 (2492)
|.....+.+++||++|++|||| |||||+||+|+|.+++++||||++|||+++ +++++|++|+++.++++.+.+
T Consensus 548 l~~~~~~~~~~Pfk~v~~~G~v------KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l 621 (805)
T PRK00390 548 LRDLGLVSSDEPFKKLLTQGMV------KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFL 621 (805)
T ss_pred HHHhhcccCCcchhhheecCcE------EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHH
Confidence 4444446789999999999999 999999999999999999999999999997 689999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhh
Q psy15223 2219 RRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILK 2298 (2492)
Q Consensus 2219 ~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K 2298 (2492)
+++||++++.+++...++. ....+|+|+++++++++++++++|++|+|++|++.+++|++ +++++|
T Consensus 622 ~kl~~~~~~~~~~~~~~~~--------~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n-~lsk~~----- 687 (805)
T PRK00390 622 QRVWRLVVDAKGEAGALDV--------AALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVN-ALYKAE----- 687 (805)
T ss_pred HHHHHHHHHhhhcccccCc--------ccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHH-----
Confidence 9999999996655433321 23468999999999999999999999999999999999994 677665
Q ss_pred hhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCc
Q psy15223 2299 DRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPK 2367 (2492)
Q Consensus 2299 ~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~ 2367 (2492)
.++++.+++++++.+++||+|||||+|||||+.|+.. +||+.++||+.++
T Consensus 688 ------------~~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~~-------~sv~~~~wP~~~~ 737 (805)
T PRK00390 688 ------------DEQDKAVLREALEILVRLLAPFAPHLAEELWEKLGHE-------GSIANAPWPTADE 737 (805)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC-------CeeEecCCCCCCH
Confidence 0346779999999999999999999999999999643 6899999998654
No 50
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=5.5e-117 Score=1205.92 Aligned_cols=633 Identities=22% Similarity=0.342 Sum_probs=523.1
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAY 529 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~ 529 (2492)
++|++++|||||||.|||||++|++++||++||+||+||+|+|++||||||||||.+|++. +.+|.+ |+.
T Consensus 32 ~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~---g~~~~~-------~~~ 101 (805)
T PRK00390 32 KKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKT---GTHPAE-------WTY 101 (805)
T ss_pred CCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHc---CCCHHH-------HHH
Confidence 4799999999999999999999999999999999999999999999999999999999875 667654 999
Q ss_pred HHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccc-eeccEE
Q psy15223 530 EKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKK-KYDFSI 608 (2492)
Q Consensus 530 ~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~-~~~~s~ 608 (2492)
++++.|+++|++||+++||+++|.|+||+|+++++++|.+|+++|+||++.+||+|||.|+|+||++||+... ..+.+.
T Consensus 102 ~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~ 181 (805)
T PRK00390 102 ENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAP 181 (805)
T ss_pred HHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998531 333344
Q ss_pred EEEee-------cCCch-hhh----------------------------hhhccCCCCCCCeEEEEEecCCcccccccEE
Q psy15223 609 YVGFS-------FSEPE-KIK----------------------------SIFNLKNLPSGKGYIVIWTSTPWTIPANQAL 652 (2492)
Q Consensus 609 yv~f~-------~~~~~-~~~----------------------------~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai 652 (2492)
+++++ +.+-. .+. -.|.+ .+.+.+++||||||||||||+||
T Consensus 182 ~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~---~~~~~~l~v~TTrPeTl~g~~ai 258 (805)
T PRK00390 182 VEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKV---EDSDEKIEVFTTRPDTLFGATYL 258 (805)
T ss_pred eEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEc---cCCCCEEEEEeCCchHhhcceEE
Confidence 44332 11100 000 00111 12246899999999999999999
Q ss_pred EEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCCcCcE-EEEEecccccCCEEecCCcccccCCCceecEEecCCcc
Q psy15223 653 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNI-IGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYIT 731 (2492)
Q Consensus 653 ~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~-~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~ 731 (2492)
||||+++|+.+..++ . . .++++++++....+++... +.+++|. |.|++|.||++ ++++||+.++||+
T Consensus 259 av~p~~~~~~~~~~~---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~g~~~~~P~~------~~~ipi~~~~~V~ 326 (805)
T PRK00390 259 VLAPEHPLVEKLAEQ---N-P-AVAAFIEECKKKSDLERQTETKEKTGV-FTGLYAIHPLT------GEKIPVWIADYVL 326 (805)
T ss_pred EECCCChhHHhhhcc---h-H-HHHHHHHHHhhhcchhhhhcccceeee-ecCcEEECCCC------CCeeeEEEecccc
Confidence 999999998776432 1 1 2455555554444444332 3688996 99999999998 8899999999999
Q ss_pred cCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCCCC--------------cccccCCCCCCcchhhchHHHHHHHH
Q psy15223 732 VDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDG--------------NFISTLPLFGGMSIWKASKLICSYLK 797 (2492)
Q Consensus 732 ~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~~G--------------~~~~~~~~~~G~~v~~a~~~i~~~L~ 797 (2492)
++.|||+||+|||||++||++|++||| +++++||++| +|++. +.|+|+++++|++.|++.|+
T Consensus 327 ~~~GTG~V~~~Pah~~~D~~~~~~~~L---~~~~~i~~~g~~~~~~~~~~~~~g~~~~~-~~~~Gl~~~~a~~~Ii~~L~ 402 (805)
T PRK00390 327 MDYGTGAVMAVPAHDQRDFEFAKKYGL---PIKPVIEPGDGDEDISEEAYTGDGVLINS-GELDGLDSEEAKEAIIAWLE 402 (805)
T ss_pred CCCCCCeEEEcCCCCHHHHHHHHHcCC---CceeeeCCCCcccccccccccCCeEEEec-cccCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999 7778887544 44432 78999999999999999999
Q ss_pred hcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCe
Q psy15223 798 KSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDW 877 (2492)
Q Consensus 798 ~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DW 877 (2492)
+.|.+ ++++.| +++||
T Consensus 403 ~~g~~----------------~~~v~~------------------------------------------------~l~DW 418 (805)
T PRK00390 403 EKGLG----------------KRKVNY------------------------------------------------RLRDW 418 (805)
T ss_pred HcCCC----------------CCceEE------------------------------------------------ECCCc
Confidence 99873 223322 13699
Q ss_pred eeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccccCchhhcC----CCccCceecCCccccccccc
Q psy15223 878 TISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLG----DDAVNYKKSNDTLDVWFDSG 953 (2492)
Q Consensus 878 cISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~~~~----~~~~~~~~~~dvlDvWfdSg 953 (2492)
||||||+||+|||+|||++||.+.+...++..++++.+...|.+.|+... .+++. .++..++|++|||||||||+
T Consensus 419 ~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~re~Dv~DtwfdSs 497 (805)
T PRK00390 419 GISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKH-PEWVNVTCPKCGKPARRETDTMDTFVGSS 497 (805)
T ss_pred cccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhc-hhhhCCCccccCCCceeCCcccccccccc
Confidence 99999999999999999999986556667777777777777877776433 23332 23467999999999999998
Q ss_pred cccchhccc--------CccccCCcCeeeeecccccc-------hhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCcc
Q psy15223 954 ITHQTVIRG--------SHKKQLIFPADLYLEGSDQH-------RGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKK 1018 (2492)
Q Consensus 954 ~~~~~~~~~--------~~~~~~~~p~Dl~~~G~D~~-------rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~K 1018 (2492)
+++...... ++.+++|||+|+|++|+||+ |+| ++.|.....+.+++||++|++|||+ |
T Consensus 498 w~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~-~~~l~~~~~~~~~~Pfk~v~~~G~v------K 570 (805)
T PRK00390 498 WYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFF-TKVLRDLGLVSSDEPFKKLLTQGMV------K 570 (805)
T ss_pred cHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHH-HHHHHHhhcccCCcchhhheecCcE------E
Confidence 554433321 12237899999999999998 644 4555544446789999999999999 9
Q ss_pred ccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccc
Q psy15223 1019 MSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDM 1097 (2492)
Q Consensus 1019 MSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~ 1097 (2492)
||||+||+|+|.+++++||||++|||+++ +++++|++|+++.++++.++++|++|++++.+++...++. ..
T Consensus 571 MSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~--------~~ 642 (805)
T PRK00390 571 MSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGALDV--------AA 642 (805)
T ss_pred eCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcccccCc--------cc
Confidence 99999999999999999999999999987 6899999999999999999999999999997666544321 23
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHH
Q psy15223 1098 VEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLR 1177 (2492)
Q Consensus 1098 ~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~ 1177 (2492)
...|+|+++++++++++++++|++|+|++|++.+++|++ +|+.+| .++++++++++++.+++
T Consensus 643 ~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n-~lsk~~-----------------~~~~~~~l~~~l~~l~~ 704 (805)
T PRK00390 643 LSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVN-ALYKAE-----------------DEQDKAVLREALEILVR 704 (805)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999994 677766 13578899999999999
Q ss_pred HhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCc
Q psy15223 1178 LISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLP 1216 (2492)
Q Consensus 1178 lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~ 1216 (2492)
+|+||+||+|||+|+.|+.. +||+.+.||+.+
T Consensus 705 lLaPf~P~iaEElw~~L~~~-------~sv~~~~wP~~~ 736 (805)
T PRK00390 705 LLAPFAPHLAEELWEKLGHE-------GSIANAPWPTAD 736 (805)
T ss_pred HHhhhhhHHHHHHHHHcCCC-------CeeEecCCCCCC
Confidence 99999999999999999642 699999999754
No 51
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=2.6e-116 Score=1199.18 Aligned_cols=639 Identities=25% Similarity=0.384 Sum_probs=524.0
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR 525 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~ 525 (2492)
++++++|++++|||||||.|||||++|++++|+++||+||+||+|+|++||||||||||.+|++. +++|.+
T Consensus 25 ~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~---g~~p~~------ 95 (842)
T TIGR00396 25 DSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKR---GIHPAK------ 95 (842)
T ss_pred CCCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHc---CCCHHH------
Confidence 35678899999999999999999999999999999999999999999999999999999999875 677865
Q ss_pred HHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccc---
Q psy15223 526 ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKK--- 602 (2492)
Q Consensus 526 ~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~--- 602 (2492)
|+.++++.|++||++||+++||+++|.|+||+|+++++|+|.+|+++||||++.+||+|||.|+|+||++||++..
T Consensus 96 -~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~ 174 (842)
T TIGR00396 96 -WTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSW 174 (842)
T ss_pred -HHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996422
Q ss_pred eeccEE--------EEEe---e--cCC--------ch--------------hhhhhhccCCCCCCCeEEEEEecCCcccc
Q psy15223 603 KYDFSI--------YVGF---S--FSE--------PE--------------KIKSIFNLKNLPSGKGYIVIWTSTPWTIP 647 (2492)
Q Consensus 603 ~~~~s~--------yv~f---~--~~~--------~~--------------~~~~~~~~~~~~~~~~~~~iwTTtPwTl~ 647 (2492)
..++++ |++. . +.+ ++ ...-.|.+ .+.+.+++||||||||||
T Consensus 175 ~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g~~i~f~~---~~~~~~l~v~TTrP~Tl~ 251 (842)
T TIGR00396 175 RGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKI---ADHKEKIAVFTTRPDTIF 251 (842)
T ss_pred cCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccccceEEEEEEc---CCCCCEEEEEeCCcHHhh
Confidence 111222 3321 0 000 00 00000111 112358999999999999
Q ss_pred cccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC----CcCcEEEEEecccccCCEEecCCcccccCCCceec
Q psy15223 648 ANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG----FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSP 723 (2492)
Q Consensus 648 ~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~----~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p 723 (2492)
||+||||||+++|+.+.... .+.++.+.++.. .+...+.+.+|..|.|++|.||++ ++.+|
T Consensus 252 g~~~iav~p~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~------~~~ip 316 (842)
T TIGR00396 252 GVTYLALAPEHPLVEKIAEN---------NPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLT------GEKIP 316 (842)
T ss_pred hccEEEECCCCHHHHhhhcc---------hHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCC------CCEeE
Confidence 99999999999998764211 233445544432 122223466788899999999998 88999
Q ss_pred EEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC------------CCCcccccCCCCCCcchhhchHH
Q psy15223 724 IYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM------------DDGNFISTLPLFGGMSIWKASKL 791 (2492)
Q Consensus 724 ii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd------------~~G~~~~~~~~~~G~~v~~a~~~ 791 (2492)
|+.++||+++.|||+||+|||||++||++|++||| +++++|| ++|+|++ .+.|.|+++.+|++.
T Consensus 317 i~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L---~i~~vi~~~~~~~~~~~~~~~G~~~~-~~~~~Gl~~~~A~~~ 392 (842)
T TIGR00396 317 IWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKL---PIKVVIDPAGKNLKTQAFTEDGVLVN-SGEFNGLNSSEAREA 392 (842)
T ss_pred EEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCC---CcceeeCCcccccccccccCCceEec-chhcCCCCHHHHHHH
Confidence 99999999999999999999999999999999999 7778887 3778875 488999999999999
Q ss_pred HHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHH
Q psy15223 792 ICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMI 871 (2492)
Q Consensus 792 i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l 871 (2492)
|++.|+++|.+. +|++|
T Consensus 393 Ii~~L~~~g~~~----------------~~v~y----------------------------------------------- 409 (842)
T TIGR00396 393 IIAMLEKEGKGK----------------RKVNY----------------------------------------------- 409 (842)
T ss_pred HHHHHHHcCCCC----------------ceEEe-----------------------------------------------
Confidence 999999998732 22221
Q ss_pred hcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCc--------cccccCchhhcCCCccCceecC
Q psy15223 872 LNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE--------IWQNLDIKEFLGDDAVNYKKSN 943 (2492)
Q Consensus 872 ~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~--------~w~~~~~~~~~~~~~~~~~~~~ 943 (2492)
+++||||||||+||+|||+|||++||.+.+...++..++++.+...|.+ .|.... ++..+..+.|++
T Consensus 410 -rlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~----cp~cg~~~~ret 484 (842)
T TIGR00396 410 -RLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVT----CPSCGKPALRET 484 (842)
T ss_pred -ecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCc----CccCCCCcEeCC
Confidence 1469999999999999999999999986545667777777666655532 233222 222345799999
Q ss_pred CccccccccccccchhcccC--------ccccCCcCeeeeecccccc-------hhhHHHHHHHHHHhcCCCCceEEEEe
Q psy15223 944 DTLDVWFDSGITHQTVIRGS--------HKKQLIFPADLYLEGSDQH-------RGWFHSSLLTSIILNKSAPYKALLTH 1008 (2492)
Q Consensus 944 dvlDvWfdSg~~~~~~~~~~--------~~~~~~~p~Dl~~~G~D~~-------rgwf~s~l~~~~~~~~~~p~k~v~~h 1008 (2492)
|||||||||||++....... ...++|||+|+|++|.||+ |||+ ++|....++.+++||++|++|
T Consensus 485 DtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~-~~l~~~~~~~~~~Pfk~l~~~ 563 (842)
T TIGR00396 485 DTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWH-KFLYDIGYVSTKEPFKKLINQ 563 (842)
T ss_pred CCCCCcccCCHHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHH-HHHHhccccCCCccHHHHhcc
Confidence 99999999997665433211 1236799999999999996 8864 777777788899999999999
Q ss_pred eEEEc----CCCc---------------------------cccccCCCccCcchhhhhcChhhHHHHhhc-cCccccccc
Q psy15223 1009 GFVVD----SKGK---------------------------KMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 1056 (2492)
Q Consensus 1009 G~vld----~~G~---------------------------KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~f 1056 (2492)
|||+| ++|+ |||||+||+|+|.+++++||+|++|||+++ +++++|++|
T Consensus 564 G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~ 643 (842)
T TIGR00396 564 GMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEW 643 (842)
T ss_pred ceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCcc
Confidence 99999 8999 999999999999999999999999999995 689999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHH
Q psy15223 1057 SNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYE-FHMIVSKLQIYC 1135 (2492)
Q Consensus 1057 s~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~-f~~a~~~l~~f~ 1135 (2492)
+++.++++.++++||||+++++++++.++.. .....+...|+|+++++++++++++++|++|+ |++|++.+++|+
T Consensus 644 ~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~----~~~~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~ 719 (842)
T TIGR00396 644 NDSGLEGARRFLDRVWNLFYNILGELDGKTY----LTPTILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILL 719 (842)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhccccc----CCcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999999999999998887755321 11223567999999999999999999999999 999999999999
Q ss_pred hhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCC
Q psy15223 1136 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKL 1215 (2492)
Q Consensus 1136 ~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~ 1215 (2492)
+ +|++. . + ..++++++..+++|||||+||+|||+|+.|+.. ..||+.+.||+.
T Consensus 720 n-~L~~~-~---~----------------~~~l~~~l~~ll~lLaPf~PhiaEElW~~l~~~------~~sv~~~~wP~~ 772 (842)
T TIGR00396 720 N-ALYKA-K---K----------------DALYLEYLKGFLTVLSPFAPHLAEELWEKLGSE------PFIIKQAKWPKV 772 (842)
T ss_pred H-HHHhh-h---h----------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCC------CCeeecCCCCCC
Confidence 4 55541 0 0 136899999999999999999999999999742 258999999985
Q ss_pred c
Q psy15223 1216 P 1216 (2492)
Q Consensus 1216 ~ 1216 (2492)
+
T Consensus 773 d 773 (842)
T TIGR00396 773 D 773 (842)
T ss_pred C
Confidence 4
No 52
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.7e-114 Score=1173.91 Aligned_cols=647 Identities=20% Similarity=0.308 Sum_probs=506.0
Q ss_pred cCCCCcEEEEcCCCCCCCc-ccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHH
Q psy15223 446 SINRPKFILHDGPPYANGD-IHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKA 524 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~-lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~ 524 (2492)
+.++++|++++|||||||. |||||++|++++|+++||+||+||+|+|+|||||||||||.+|.+. +..|.+
T Consensus 106 ~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~---g~~p~~----- 177 (963)
T PLN02563 106 DTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIET---GTHPKI----- 177 (963)
T ss_pred cCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHc---CCChHH-----
Confidence 4577899999999999997 9999999999999999999999999999999999999999998774 566655
Q ss_pred HHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccccccccccc-ce
Q psy15223 525 RALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYK-KK 603 (2492)
Q Consensus 525 ~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~-~~ 603 (2492)
++.++++.|++||++||+++||+++|.|+||+|+++++|+|.+|+++|||||+.++|+|||.|+|+||++||++. ..
T Consensus 178 --~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~ 255 (963)
T PLN02563 178 --TTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSE 255 (963)
T ss_pred --hHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCc
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999985 33
Q ss_pred eccEEEEEeecCC---------------------chhhhh--------------hhccCCCC--CCCeEEEEEecCCccc
Q psy15223 604 YDFSIYVGFSFSE---------------------PEKIKS--------------IFNLKNLP--SGKGYIVIWTSTPWTI 646 (2492)
Q Consensus 604 ~~~s~yv~f~~~~---------------------~~~~~~--------------~~~~~~~~--~~~~~~~iwTTtPwTl 646 (2492)
.+.+.++++++.. ++.+.. .|.+.... ..+.+++|||||||||
T Consensus 256 ~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl 335 (963)
T PLN02563 256 RGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTL 335 (963)
T ss_pred CCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHhccccceEEEEEEecCccccCCCCEEEEEeCCChHH
Confidence 3433333333321 000000 01111000 0246899999999999
Q ss_pred ccccEEEEcCCCCEEEEEecCCCC---ceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceec
Q psy15223 647 PANQALHVHPEFDYALVHIKNDPP---LLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSP 723 (2492)
Q Consensus 647 ~~n~ai~v~p~~~Y~~~~~~~~~~---~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p 723 (2492)
|||+||+|||+++|+.+....+.. +.|+.+..+...+. +. .....++..|.|+++.||++ ++.+|
T Consensus 336 ~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~-~~-----~~~~~k~g~~~g~~~~~P~~------~~~iP 403 (963)
T PLN02563 336 FGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLE-RT-----ELQKEKTGVFTGSYAINPAT------GEAIP 403 (963)
T ss_pred hhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHh-hh-----hccceecccccCcEEeccCC------CCeeE
Confidence 999999999999998544322100 12222222222221 11 11345677899999999998 88999
Q ss_pred EEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC---CC-----CcccccC-----C----CCCCcchh
Q psy15223 724 IYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM---DD-----GNFISTL-----P----LFGGMSIW 786 (2492)
Q Consensus 724 ii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd---~~-----G~~~~~~-----~----~~~G~~v~ 786 (2492)
|+.++||+++.|||+||+|||||++||++|++||| +++++|+ ++ |.|+++. + .|.|+.++
T Consensus 404 I~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~L---pi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~~Gl~~~ 480 (963)
T PLN02563 404 IWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDL---PIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDINGLSSK 480 (963)
T ss_pred EEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCC---CceeeeccCccccccccccccCceeEecCCCcccccCCcCHH
Confidence 99999999999999999999999999999999999 5666663 22 4454432 3 39999999
Q ss_pred hchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHH
Q psy15223 787 KASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDR 866 (2492)
Q Consensus 787 ~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~r 866 (2492)
+|++.|++.|++.|.+.+ .++|
T Consensus 481 eA~~~Ii~~L~~~g~~~~--------------------------------------------------~v~y-------- 502 (963)
T PLN02563 481 EAAKKVIEWLEETGNGKK--------------------------------------------------KVNY-------- 502 (963)
T ss_pred HHHHHHHHHHHhCCCCCC--------------------------------------------------eeEe--------
Confidence 999999999999988521 1222
Q ss_pred HHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCc-HHHHHHHHH--HHhhcCCccccccCchhhc----CCCccCc
Q psy15223 867 LKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKT-LELIELIAK--KIELNGIEIWQNLDIKEFL----GDDAVNY 939 (2492)
Q Consensus 867 l~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~-~~~i~~~~~--~~~~~g~~~w~~~~~~~~~----~~~~~~~ 939 (2492)
+++||||||||+||+|||+|||++||+.++.. .++...+.+ .+...|...|.-....+++ +.++..+
T Consensus 503 ------~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~ 576 (963)
T PLN02563 503 ------KLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPA 576 (963)
T ss_pred ------cCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCCchhcchhhhcCcCcCCCCCc
Confidence 36899999999999999999999999654332 233333432 2233454444333333333 2335679
Q ss_pred eecCCccccccccccccchhcccCcc--------ccCCcCeeeeecccccc-------hhhHHHHHHHHHHhcCCCCceE
Q psy15223 940 KKSNDTLDVWFDSGITHQTVIRGSHK--------KQLIFPADLYLEGSDQH-------RGWFHSSLLTSIILNKSAPYKA 1004 (2492)
Q Consensus 940 ~~~~dvlDvWfdSg~~~~~~~~~~~~--------~~~~~p~Dl~~~G~D~~-------rgwf~s~l~~~~~~~~~~p~k~ 1004 (2492)
+|++|||||||||++++.......+. .++|+|+|+|++|.||+ ||||++++..++ +.+++||++
T Consensus 577 ~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~-~~~~ePfk~ 655 (963)
T PLN02563 577 RRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARFWHKVLYDIGV-VSTKEPFQC 655 (963)
T ss_pred EECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhHhHHHHHHHHHHHHhhc-cCCcccHHH
Confidence 99999999999998777655532211 14799999999999995 999999998888 578999999
Q ss_pred EEEeeEEEc---------CCCc---------------------------------------------cccccCCCccCcc
Q psy15223 1005 LLTHGFVVD---------SKGK---------------------------------------------KMSKSKGNIIKPQ 1030 (2492)
Q Consensus 1005 v~~hG~vld---------~~G~---------------------------------------------KMSKS~GN~i~p~ 1030 (2492)
|++||||+| ++|+ |||||+||+|+|.
T Consensus 656 ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~ 735 (963)
T PLN02563 656 LVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPD 735 (963)
T ss_pred HhccceeecCccccceecCCCcCcccccccccccccccccccccccccccccccccCCcccccccccccccccCCcCCHH
Confidence 999999998 7777 9999999999999
Q ss_pred hhhhhcChhhHHHHhhcc-CcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHH
Q psy15223 1031 KLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINIT 1109 (2492)
Q Consensus 1031 ~ii~~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~ 1109 (2492)
++|++||||+||||+++. +..+|..|+.+.++.+.++++|+||++.....+...+.+. ... .....|+|++++++
T Consensus 736 eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~~~~~~~~~--~~~--~~~~~d~~ll~kl~ 811 (963)
T PLN02563 736 DVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPLPDGSFRDG--TVV--TDEEPSLEQLRLLH 811 (963)
T ss_pred HHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhhcccccCcc--ccc--cCCcchHHHHHHHH
Confidence 999999999999999964 5677889999999999889999988876542211122211 111 11346899999999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Q psy15223 1110 NLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEE 1189 (2492)
Q Consensus 1110 ~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEe 1189 (2492)
+++++++++|++|+|++|++++++|++ .++++ + ..+++++..+++||+||+||+|||
T Consensus 812 ~~ikkVte~~e~y~FntAi~~lmef~n-~l~~~--------------~--------~~~~~~l~~ll~LLaPf~PhiaEE 868 (963)
T PLN02563 812 KCIAKVTEEIESTRFNTAISAMMEFTN-AAYKW--------------D--------KVPREAIEPFVLLLSPYAPHLAEE 868 (963)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhCc--------------h--------HHHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999999999999999999999995 34321 0 134678999999999999999999
Q ss_pred HHHHccCCCccccCCCceeeccCCCCc
Q psy15223 1190 AWSIFSDKNFYIESGETIFTQLHYKLP 1216 (2492)
Q Consensus 1190 iw~~l~~~~~~~~~~~SV~~~~wp~~~ 1216 (2492)
||+.|+.. +||+.+.||+.+
T Consensus 869 LW~~Lg~~-------~sv~~~~WP~~d 888 (963)
T PLN02563 869 LWFRLGHS-------NSLAYEPWPEAN 888 (963)
T ss_pred HHHHcCCC-------CeeeeCCCCCCC
Confidence 99999743 699999999854
No 53
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-102 Score=1013.09 Aligned_cols=671 Identities=23% Similarity=0.343 Sum_probs=522.8
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCC-CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINR-PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~-~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
.++..++|+|||++|+++++|+... +.++ +|||+++|+|||||.|||||++|||+.||++||+||+|||||||||||
T Consensus 4 ~y~~~~IE~KWQ~~W~e~~~Fe~~~--d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwd 81 (814)
T COG0495 4 RYNPREIEEKWQKRWEEAKVFEADE--DSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 81 (814)
T ss_pred ccchHHHHHHHHHHHHhcCCcccCC--CCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCccc
Confidence 4556689999999999999998743 3333 699999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceE
Q psy15223 1648 CHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 1727 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliy 1727 (2492)
++|||||..|++. +.+|.. |+++||+.|++||++||+|+||+|+|.|+||+|++++||+|.+|+++||||
T Consensus 82 afGlPae~~A~~~---~~~P~~-------wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y 151 (814)
T COG0495 82 AFGLPAENAAIKI---GTDPAK-------WTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAY 151 (814)
T ss_pred ccCchHHHHHHHh---CCChHH-------HHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEE
Confidence 9999999999987 778876 999999999999999999999999999999999999999999999999999
Q ss_pred EeCcccccCCCCCcccccccccce------eee----cceEEEEEeccC--------------chhhH----hhhccCCC
Q psy15223 1728 HGLKPVNWCFDCKSALAEAEIEYK------KKY----DFSIYVGFSFSE--------------PEKIK----SIFNLKNL 1779 (2492)
Q Consensus 1728 r~~~~v~wcp~~~t~Lad~Evey~------~~~----~~~~yv~f~~~~--------------~~~~~----~~~~~~~~ 1779 (2492)
++..+|||||.|+|+|||+||... ... -++|++++.-.. ++.+. ++++.+.+
T Consensus 152 ~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g 231 (814)
T COG0495 152 RKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEG 231 (814)
T ss_pred eccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCC
Confidence 999999999999999999999855 222 345555543111 11111 23332221
Q ss_pred ------CCC---ccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCc--eE---E
Q psy15223 1780 ------PSG---KGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGN--II---G 1845 (2492)
Q Consensus 1780 ------~~~---~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~--~v---~ 1845 (2492)
.+. ...+.|+||||.|++|.+.+++.|+++.+...+.+ ..- ..+.++.+....... .+ .
T Consensus 232 ~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~---~~~----~~~a~fv~~~~~~~~~~~~~~~~ 304 (814)
T COG0495 232 YEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTN---PQT----PLVAEFVDECKGTGVVESVPAHA 304 (814)
T ss_pred eEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcC---ccc----hhHHHHHHHhcCCCceeeeeccC
Confidence 011 35799999999999999999999998765333322 000 223333332221111 11 3
Q ss_pred EEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC-------
Q psy15223 1846 ICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM------- 1918 (2492)
Q Consensus 1846 ~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd------- 1918 (2492)
+.+|.. .|.+++||++ +..+||+.++||.+.+|||+||.+|||+..||++|++|+++..+++.+.+
T Consensus 305 ~k~gv~-~g~~a~~p~~------~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~ 377 (814)
T COG0495 305 EKDGVF-LGGYAINPVN------GEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVY 377 (814)
T ss_pred CCccee-ccccccCCCC------CCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCccccee
Confidence 355654 4578899999 88999999999999999999999999999999999999994333332222
Q ss_pred -CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHH
Q psy15223 1919 -DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 1997 (2492)
Q Consensus 1919 -~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~ 1997 (2492)
++|.+. +.+.|.|+...+|...++..|.+ +...|||+++..
T Consensus 378 ~~~g~li-nS~~~~gl~~e~a~~~~~~~l~~--------------------------~~~~q~~v~Y~l----------- 419 (814)
T COG0495 378 EGEGVLI-NSGGLDGLDYEEAKVKIRCGLVK--------------------------RGLGQWFVNYRL----------- 419 (814)
T ss_pred ccCceEe-ccccccCcchhHHHHHHHHhHHH--------------------------hcCCceEEeccc-----------
Confidence 244433 34567777777565555554443 456899999976
Q ss_pred HHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCc-------
Q psy15223 1998 SAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGI------- 2070 (2492)
Q Consensus 1998 ~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~------- 2070 (2492)
+||++||||+||.|||+++|+.|+..+...+.+...+++...-.|.
T Consensus 420 ---------------------------rdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~ 472 (814)
T COG0495 420 ---------------------------RDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWD 472 (814)
T ss_pred ---------------------------chHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCC
Confidence 5999999999999999999999998765555565555555444333
Q ss_pred ccccccchhhhcCCCccCceecccccccccccCcchhhhccCCcc---------ccCCcCceeeecccchhhhhHHHHHH
Q psy15223 2071 EIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK---------KQLIFPADLYLEGSDQHRGWFHSSLL 2141 (2492)
Q Consensus 2071 ~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~---------~~~~~P~Dl~~~G~D~~r~wf~~~l~ 2141 (2492)
+.|...++ + .....|++||||+|++|+|++..+.+.... +++|||+|+|++|+||+-.|+-.+.+
T Consensus 473 ~~W~~~s~----~--~s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF 546 (814)
T COG0495 473 EEWVIESL----P--DSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRF 546 (814)
T ss_pred cceEEEec----C--CCceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHH
Confidence 33433332 2 267899999999999999999888754332 37899999999999999888777777
Q ss_pred HHHHhc------CCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHH
Q psy15223 2142 TSIILN------KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRV 2214 (2492)
Q Consensus 2142 ~~~~l~------~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~ 2214 (2492)
.+.+++ .++||++++++|||+..+|+|||||+||+|+|++++++||||++|+|+++ ++..+|++|+++.++.+
T Consensus 547 ~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~ 626 (814)
T COG0495 547 FHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGA 626 (814)
T ss_pred HHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHH
Confidence 777775 46899999999999966899999999999999999999999999999996 68899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhhhhhhH
Q psy15223 2215 VETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRM-YEFHMIVSKLQIYCSEDLGSFY 2293 (2492)
Q Consensus 2215 ~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~-~~f~~a~~~l~~f~~~~ls~~Y 2293 (2492)
.++++|+|+.+.......... ........|+|+++++ ++.+++.++. +.|+.|+..+|.|++ .| .+|
T Consensus 627 ~rfL~r~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~h~~---~~~v~~~~e~~~~~nt~i~~~m~l~N-~l-~~~ 694 (814)
T COG0495 627 RRFLQRVWNLVKEHLEKLVEE-------LTKEQGKEDRWLLHRT---IKKVTEDFEARQTFNTAIAALMELLN-AL-RKY 694 (814)
T ss_pred HHHHHHHHHHHHHhhhccccc-------ccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHH
Confidence 999999999887665432110 0111115678877766 4556666665 999999999999994 44 445
Q ss_pred HHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccC
Q psy15223 2294 LDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVY 2369 (2492)
Q Consensus 2294 le~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~ 2369 (2492)
..... ..+ .++.+++..+++||+||+||+|||+|+.|++. ++|+.++||+.++..
T Consensus 695 ~~~~~----------~~~----~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~~-------~~v~~~~wP~~de~~ 749 (814)
T COG0495 695 LRRTE----------GDR----KVLREALETWVRLLAPFAPHIAEELWEELGNE-------GFVSNAPWPEPDEEA 749 (814)
T ss_pred Hhccc----------chH----HHHHHHHHHHHHHhcccccHHHHHHHHHhcCC-------CceeeCCCCCCChhh
Confidence 43211 111 57889999999999999999999999999863 389999999987643
No 54
>KOG0435|consensus
Probab=100.00 E-value=3.7e-98 Score=902.18 Aligned_cols=664 Identities=20% Similarity=0.285 Sum_probs=504.0
Q ss_pred CCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHH
Q psy15223 1574 KREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPI 1653 (2492)
Q Consensus 1574 ~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPi 1653 (2492)
.+|+.|+++|.+...|.. +.+.+++| ||++|+|||+|.|||||.+.||++|+++||+||+||+|++|||||.+|||+
T Consensus 34 ~iEk~W~~~~~~~~~~~~--~~d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPA 110 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSK--DSDKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPA 110 (876)
T ss_pred HHHHHHHHHHhcCCcccc--ccccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCch
Confidence 789999999998877654 44567778 677999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCccc
Q psy15223 1654 EIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPV 1733 (2492)
Q Consensus 1654 e~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v 1733 (2492)
|++|.+. +++|.. |+.+||++|++|+++||+++||||+..|++|+|++|+||+|.+||++||+||...+|
T Consensus 111 ENAAier---gv~P~s-------WT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~V 180 (876)
T KOG0435|consen 111 ENAAIER---GVHPAS-------WTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEV 180 (876)
T ss_pred hhHHHhc---CCCchh-------hhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhcccccc
Confidence 9999776 889887 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccccccccccee-----------eecceEEEEEeccCc------hh------h----HhhhccCCC-------
Q psy15223 1734 NWCFDCKSALAEAEIEYKK-----------KYDFSIYVGFSFSEP------EK------I----KSIFNLKNL------- 1779 (2492)
Q Consensus 1734 ~wcp~~~t~Lad~Evey~~-----------~~~~~~yv~f~~~~~------~~------~----~~~~~~~~~------- 1779 (2492)
||||.++|+||+++|.-.. +.-.+|+++.+-... +. + .+++|...+
T Consensus 181 NWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el~F~l 260 (876)
T KOG0435|consen 181 NWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAELMFPL 260 (876)
T ss_pred ccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceEEEEEe
Confidence 9999999999999995221 112344444321110 00 1 123332211
Q ss_pred ---CCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccE
Q psy15223 1780 ---PSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKIN 1856 (2492)
Q Consensus 1780 ---~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~ 1856 (2492)
...+..|.||||||+||+|.+++++.|++..+.... ++.+.+. .-... + +|.. .+..
T Consensus 261 l~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~------------~lkefl~-~~~l~----~--Kg~~-lp~~ 320 (876)
T KOG0435|consen 261 LDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDS------------SLKEFLS-KSDLP----Q--KGVQ-LPCQ 320 (876)
T ss_pred ccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhc------------hHHHhhh-hhhcc----c--cCcc-ccee
Confidence 223589999999999999999999999986443221 1111111 00000 1 2333 3467
Q ss_pred EeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccc-cCCCCccccCCCCCCC-cc
Q psy15223 1857 FFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP-VMDDGNFISTLPLFGG-MS 1934 (2492)
Q Consensus 1857 ~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~-vd~~G~~~~~~~~~~G-~~ 1934 (2492)
+.||++ ++.+||+.++||...+|||+||.+|+|+.+|++++++.++.-...+++ .++.|+-+.. ..+.| +.
T Consensus 321 A~Np~t------g~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~-~~~tn~~~ 393 (876)
T KOG0435|consen 321 AKNPVT------GRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQ-KAFTNLDI 393 (876)
T ss_pred eccCCC------CceeeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhcc-ccccchhH
Confidence 888888 999999999999999999999999999999999999966532222232 3455554432 34577 44
Q ss_pred HHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccch
Q psy15223 1935 IWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGK 2014 (2492)
Q Consensus 1935 v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~ 2014 (2492)
.++|...|++.+++.|..-.. + .
T Consensus 394 ~q~a~~~l~~~~~~~g~g~~~----------------v-----------------------------------------s 416 (876)
T KOG0435|consen 394 RQNAALKLFQFAERKGVGGYV----------------V-----------------------------------------S 416 (876)
T ss_pred HHHHHHHHHHHHHhcCCCcce----------------e-----------------------------------------c
Confidence 456788888888776632110 0 0
Q ss_pred hHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHH--HhhcC-----cccccccchhhhcCCCcc
Q psy15223 2015 DRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKK--IELNG-----IEIWQNLDIKEFLGDDAV 2087 (2492)
Q Consensus 2015 ~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~--~~~~g-----~~~w~~~~~~~~~~~~~~ 2087 (2492)
. .++||.||||||||+|||+.+|++||.+++...+++..++++ +...| .+.|++..++. +++
T Consensus 417 ~-------kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~----cg~ 485 (876)
T KOG0435|consen 417 Y-------KLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPR----CGE 485 (876)
T ss_pred c-------hhhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCcc----CCC
Confidence 1 135999999999999999999999998877666766555533 22222 36777776543 456
Q ss_pred CceecccccccccccCcchhhhccCCccc--------cCCcCceeeecccchhhh------hHHHHHHHHHHhcCCcccc
Q psy15223 2088 NYKKSNDTLDVWFDSGITHQTVIRGSHKK--------QLIFPADLYLEGSDQHRG------WFHSSLLTSIILNKSAPYK 2153 (2492)
Q Consensus 2088 ~~~~~~dvlDvWfdSg~~~~~~~~~~~~~--------~~~~P~Dl~~~G~D~~r~------wf~~~l~~~~~l~~~~pfk 2153 (2492)
..+||+||||||+||+|+|++++++++.. .+|+|+|+|++|++|.-- +|+.++-...+....+||+
T Consensus 486 pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~ 565 (876)
T KOG0435|consen 486 PAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFT 565 (876)
T ss_pred cccccccccchhhccceeeEeecCCCCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHH
Confidence 78999999999999999999999876532 578999999999999621 2233344444556789999
Q ss_pred EEEEeeeEEcC------CC-------------------------------ceeeeccCCccCcchhhhccChhHHHHHHh
Q psy15223 2154 ALLTHGFVVDS------KG-------------------------------KKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2154 ~v~~hG~vld~------~G-------------------------------~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
.++++|||+.. .| +|||||++|+|+|.+++.+||+|++|+|++
T Consensus 566 ~Li~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~il 645 (876)
T KOG0435|consen 566 KLITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYIL 645 (876)
T ss_pred HHHhhhcccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHH
Confidence 99999999631 22 699999999999999999999999999999
Q ss_pred c-cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccH
Q psy15223 2197 S-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEF 2274 (2492)
Q Consensus 2197 s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f 2274 (2492)
. +++.++++|+++.+..+.+.+.|+|+....++..-++-.+.............++-+.+..|.+++.++++|+ .+.+
T Consensus 646 f~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~sl 725 (876)
T KOG0435|consen 646 FAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSL 725 (876)
T ss_pred hhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5 7899999999999999999999999988776654222222111122233355678899999999999999998 6889
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCC
Q psy15223 2275 HMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESG 2354 (2492)
Q Consensus 2275 ~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~ 2354 (2492)
+.|+..+|.|.| .|...| |.-+ ..+. .....+..++.+|+|++||+|+|+|..|+..
T Consensus 726 NtaIS~~m~ltN-~l~~a~----k~~~----~h~~-------~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~------- 782 (876)
T KOG0435|consen 726 NTAISDMMGLTN-ALKKAL----KIVL----VHSP-------EFERALEALVIMLAPFAPHVASELWSALAND------- 782 (876)
T ss_pred HHHHHHHHHHHH-HHHHhh----hhhh----hcCh-------HHHHHHHHHHHHHhccCchhHHHHHHHHhcc-------
Confidence 999999999984 455443 1111 0111 2345678889999999999999999999864
Q ss_pred CCe-eeccCCCCCcc
Q psy15223 2355 ETI-FTQLHYKLPKV 2368 (2492)
Q Consensus 2355 ~sV-~~~~wP~~~~~ 2368 (2492)
.+. ....||+.++.
T Consensus 783 ~~~~~~~~WP~vd~~ 797 (876)
T KOG0435|consen 783 LSWVSDVKWPEVDPD 797 (876)
T ss_pred ccchhccCCccCChh
Confidence 222 22369987654
No 55
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-90 Score=897.07 Aligned_cols=641 Identities=22% Similarity=0.333 Sum_probs=488.4
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAY 529 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~ 529 (2492)
+||++++|+|||||.|||||++|||+.||++||+||+||||+||+|||++|||||..|++. +.+|.. |+.
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~---~~~P~~-------wt~ 103 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKI---GTDPAK-------WTY 103 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHh---CCChHH-------HHH
Confidence 5999999999999999999999999999999999999999999999999999999999987 778877 999
Q ss_pred HHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccccccccccc------ce
Q psy15223 530 EKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYK------KK 603 (2492)
Q Consensus 530 ~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~------~~ 603 (2492)
++++.+++||++||.++||+|++.|+||+|++++||+|.+|+++||||++..+|+|||.|+|+||++||... ..
T Consensus 104 ~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~ 183 (814)
T COG0495 104 YNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEP 183 (814)
T ss_pred HHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999855 22
Q ss_pred eccEEE--EEeecCCchh-hh---hhh----------------ccCC-------CCCC--CeEEEEEecCCcccccccEE
Q psy15223 604 YDFSIY--VGFSFSEPEK-IK---SIF----------------NLKN-------LPSG--KGYIVIWTSTPWTIPANQAL 652 (2492)
Q Consensus 604 ~~~s~y--v~f~~~~~~~-~~---~~~----------------~~~~-------~~~~--~~~~~iwTTtPwTl~~n~ai 652 (2492)
+.+--+ ..|++.+-.. +. ..+ +-.. ..+. ...+.|+||+|.|+.|.+.+
T Consensus 184 V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~ 263 (814)
T COG0495 184 VEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYV 263 (814)
T ss_pred eeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEE
Confidence 222222 2344433110 00 000 0000 0111 35789999999999999999
Q ss_pred EEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCCcCcEE-----EEEecccccCCEEecCCcccccCCCceecEEec
Q psy15223 653 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNII-----GICKGIKLSKINFFHPLSNIDINYNRLSPIYLG 727 (2492)
Q Consensus 653 ~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~-----~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~ 727 (2492)
++-|+++.+-..+.+. . ..++.++.+...-.+... ...+|-. .|..+.||+. +..+||+.+
T Consensus 264 ~~a~~h~lv~~~~~~~--~-----~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~-~g~~a~~p~~------~e~iPi~~a 329 (814)
T COG0495 264 VLAPEHPLVGKLVTNP--Q-----TPLVAEFVDECKGTGVVESVPAHAEKDGVF-LGGYAINPVN------GEKIPVWIA 329 (814)
T ss_pred EEeCCchHHHHHhcCc--c-----chhHHHHHHHhcCCCceeeeeccCCCccee-ccccccCCCC------CCcCCEEEe
Confidence 9999987543222220 0 023333333322111111 2234433 3477889998 788999999
Q ss_pred CCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC--------CCCcccccCCCCCCcchhhchHHHHHHHHhc
Q psy15223 728 DYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM--------DDGNFISTLPLFGGMSIWKASKLICSYLKKS 799 (2492)
Q Consensus 728 ~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd--------~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~ 799 (2492)
+||.+..|||+||.+|||+..||+.+++|+++..+++.+.+ ++|.+.+ .+.+.|+...+|...++..|
T Consensus 330 ~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~lin-S~~~~gl~~e~a~~~~~~~l--- 405 (814)
T COG0495 330 NYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLIN-SGGLDGLDYEEAKVKIRCGL--- 405 (814)
T ss_pred CcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceEec-cccccCcchhHHHHHHHHhH---
Confidence 99999999999999999999999999999995443333322 2344322 24677777775544444433
Q ss_pred CCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeee
Q psy15223 800 KTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTI 879 (2492)
Q Consensus 800 g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcI 879 (2492)
+-+...|||+++.. +||++
T Consensus 406 -----------------------~~~~~~q~~v~Y~l--------------------------------------rdW~~ 424 (814)
T COG0495 406 -----------------------VKRGLGQWFVNYRL--------------------------------------RDWLK 424 (814)
T ss_pred -----------------------HHhcCCceEEeccc--------------------------------------chHHH
Confidence 33566899999865 59999
Q ss_pred eccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCC-------ccccccCchhhcCCCccCceecCCcccccccc
Q psy15223 880 SRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGI-------EIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDS 952 (2492)
Q Consensus 880 SRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~-------~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdS 952 (2492)
||||+||.|||+++|+.|+......+++...+++...-.|+ +.|...+ +......+++||||+|++|
T Consensus 425 srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s------~~~s~~~ret~Tm~~~~~s 498 (814)
T COG0495 425 SRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIES------LPDSTAYRETDTMDTFIDS 498 (814)
T ss_pred HHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEe------cCCCceeeehhhhhHhccc
Confidence 99999999999999999997653344443344443333333 2222222 1236788999999999999
Q ss_pred ccccchhcccCc---------cccCCcCeeeeecccccchhhHHHHHHHHHHhc------CCCCceEEEEeeEEEcCCCc
Q psy15223 953 GITHQTVIRGSH---------KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILN------KSAPYKALLTHGFVVDSKGK 1017 (2492)
Q Consensus 953 g~~~~~~~~~~~---------~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~------~~~p~k~v~~hG~vld~~G~ 1017 (2492)
++.+..+..... ++++|||+|+|++|+||+-.|+-.+.+.+.+++ ...||++++++|||+..+|+
T Consensus 499 swy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~ 578 (814)
T COG0495 499 SWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGE 578 (814)
T ss_pred ccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCC
Confidence 988877664322 237999999999999999888777777777765 46899999999999966899
Q ss_pred cccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccc
Q psy15223 1018 KMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISD 1096 (2492)
Q Consensus 1018 KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~ 1096 (2492)
|||||+||+|+|++++++||||++|+|+++ ++..+|++|+++.++.+.++++|+|+.+....+..... ....
T Consensus 579 KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~-------~~~~ 651 (814)
T COG0495 579 KMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEE-------LTKE 651 (814)
T ss_pred ccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhccccc-------ccch
Confidence 999999999999999999999999999996 67889999999999999999999999887765433110 0111
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHH
Q psy15223 1097 MVEIDKYAIINITNLQKEILSHYRM-YEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSL 1175 (2492)
Q Consensus 1097 ~~~~D~~il~~l~~~~~~v~~a~~~-~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l 1175 (2492)
....|+|+++++ ++.+++.++. +.|++|+..+|.|++ +| .+|..... ..+ .+|.+++..+
T Consensus 652 ~~~~~~~~~h~~---~~~v~~~~e~~~~~nt~i~~~m~l~N-~l-~~~~~~~~----------~~~----~~l~~~l~~~ 712 (814)
T COG0495 652 QGKEDRWLLHRT---IKKVTEDFEARQTFNTAIAALMELLN-AL-RKYLRRTE----------GDR----KVLREALETW 712 (814)
T ss_pred hhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHhccc----------chH----HHHHHHHHHH
Confidence 115677766554 5556666666 999999999999994 34 44443211 111 6788999999
Q ss_pred HHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCccc
Q psy15223 1176 LRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKV 1218 (2492)
Q Consensus 1176 ~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~ 1218 (2492)
++||+||+||+|||+|+.|+.. ++|+.+.||+.++.
T Consensus 713 v~lLaP~aPH~aEElW~~lg~~-------~~v~~~~wP~~de~ 748 (814)
T COG0495 713 VRLLAPFAPHIAEELWEELGNE-------GFVSNAPWPEPDEE 748 (814)
T ss_pred HHHhcccccHHHHHHHHHhcCC-------CceeeCCCCCCChh
Confidence 9999999999999999999853 48999999987653
No 56
>KOG0437|consensus
Probab=100.00 E-value=2.3e-87 Score=810.60 Aligned_cols=806 Identities=18% Similarity=0.221 Sum_probs=601.1
Q ss_pred ccCCCCchhHHHhhhcccchhcc--cccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1571 ELSKREPGWIKKWQEKKIYHQIR--KASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1571 ~l~~~E~~~~~~W~~~~~~~~~~--~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
.+.++|.++|++|+++++|+... +.+++++||+++.|+||+||.||+||+++....|+..-|+||+|++|+||+||||
T Consensus 13 ~L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHC 92 (1080)
T KOG0437|consen 13 SLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHC 92 (1080)
T ss_pred HHHHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeeccccc
Confidence 46789999999999999998754 2456789999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcc---------------------------------------------------------CCCHHHHH
Q psy15223 1649 HGMPIEIQIEKLYGK---------------------------------------------------------NLSPIEIQ 1671 (2492)
Q Consensus 1649 hGlPie~~a~k~~~~---------------------------------------------------------~~~~~e~~ 1671 (2492)
+|+||-+.|+|+... |++.+|+.
T Consensus 93 TGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~ 172 (1080)
T KOG0437|consen 93 TGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIK 172 (1080)
T ss_pred CCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhh
Confidence 999999988775210 45566666
Q ss_pred HH--HHHHHHHHHHHHHHHHHHhcccccccCeeccCC--hHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCccccccc
Q psy15223 1672 NK--ARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD--FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747 (2492)
Q Consensus 1672 ~~--~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d--~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~E 1747 (2492)
++ +..|...+.-....++++||.-+||+|.|.|+| |.|..+|.|+|.+|.+.|-|..|.+-..|||.+++++.||+
T Consensus 173 ~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHD 252 (1080)
T KOG0437|consen 173 KFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHD 252 (1080)
T ss_pred cccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccc
Confidence 65 457888888888899999999999999999998 99999999999999999999999999999999999999999
Q ss_pred ccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhH
Q psy15223 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAF 1827 (2492)
Q Consensus 1748 vey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~ 1827 (2492)
....+.+.|+-|+..++.-.+.....+ .+..+..+|++.+|.||+||+|.++++|+|+.+|..++..+ ..+++|..+
T Consensus 253 R~sGEgV~PqeytliKle~le~~p~~l--~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~-~~e~fi~t~ 329 (1080)
T KOG0437|consen 253 RASGEGVGPQEYTLIKLEVLEPFPKAL--SSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACN-ETEVFIATE 329 (1080)
T ss_pred cccCCCCCcceEEEEEEEecccchhhc--cccccceeeeeehhcCCccccCccceEEcCCccEEeEEecC-CceEEEeeh
Confidence 999999999999887765433211111 12224568999999999999999999999999999999876 336777655
Q ss_pred HhHHHHH-HHcCCcC---ceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHH
Q psy15223 1828 NLVKSCL-KKFGFKG---NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIF 1903 (2492)
Q Consensus 1828 ~~~~~~~-~~~~~~~---~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~ 1903 (2492)
..+.+.. ..+..+. ..+.+++|++|+|..+..|++. ...+-++|+..|..++|||+|.++|+..||||...
T Consensus 330 raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv-----~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al 404 (1080)
T KOG0437|consen 330 RAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSV-----YERVYALPMLTILATKGTGVVTSVPSDSPDDFAAL 404 (1080)
T ss_pred HHHhhcchhhccccCCcccceeeecchhhcCCcccCcchh-----hheeeeccceeeeccCCceeEEeCCCCCchhhhHH
Confidence 5554432 1111111 2348999999999999999985 34566999999999999999999999999999987
Q ss_pred HH-------cCCCCC-------Ccccc--------------------cC----------------CCCccccCCCCCCCc
Q psy15223 1904 KK-------QNMKDS-------DIINP--------------------VM----------------DDGNFISTLPLFGGM 1933 (2492)
Q Consensus 1904 ~~-------~~l~~~-------~~~~~--------------------vd----------------~~G~~~~~~~~~~G~ 1933 (2492)
+. ||+.++ |++.. -| .+|.|. .+.|.|.
T Consensus 405 ~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~ml--ig~y~G~ 482 (1080)
T KOG0437|consen 405 QDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTML--IGKYKGE 482 (1080)
T ss_pred HhhhhcccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEE--Eeccccc
Confidence 43 455333 22211 01 134433 4789999
Q ss_pred cHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccc
Q psy15223 1934 SIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG 2013 (2492)
Q Consensus 1934 ~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~ 2013 (2492)
+|.++++.|..+|.+.|.++.+.+.+..+ -.|||+.||+.+++|||+++.+ .+||..+.+++++++.+.+..
T Consensus 483 KVe~~K~~i~~~li~~g~a~~y~EPEkqV--mSRSGdeCiVAL~DQWYldYgE------~eWKk~a~~cLe~l~~f~dEt 554 (1080)
T KOG0437|consen 483 KVEDAKPKIKTDLIETGDALKYNEPEKQV--MSRSGDECIVALCDQWYLDYGE------AEWKKQAKECLENLNTFSDET 554 (1080)
T ss_pred cHHhhhhHHHHHHHhcccceeecCcchhh--hccCCCceEEEeccchhhhcCc------HHHHHHHHHHHhhhhccCHHH
Confidence 99999999999999999999988877665 4599999999999999999998 559999999999999999999
Q ss_pred hhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHH-HHHHHHHHhhcCcccccccchhhhcCCC--ccCce
Q psy15223 2014 KDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLEL-IELIAKKIELNGIEIWQNLDIKEFLGDD--AVNYK 2090 (2492)
Q Consensus 2014 ~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~-~~~i~~~~~~~g~~~w~~~~~~~~~~~~--~~~~~ 2090 (2492)
|+-|...|+|+..|.|||..+.||+|||.-..-.+++..++.+. ...+++++.. ++-|.. +-.++
T Consensus 555 R~~fE~tLdWL~~wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~------------d~~g~~~~plgi~ 622 (1080)
T KOG0437|consen 555 RNGFEDTLDWLGQWACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHR------------DLYGKVEGPLGIK 622 (1080)
T ss_pred HHHHHHHHHHHHhhhhhccccCCCCCCCcHHHHHHhcchhHHHHHHHHHHHHHHH------------hhccCCcccCCCC
Confidence 99999999999999999999999999983211112222122211 1223333221 111111 11223
Q ss_pred ecccccccc---cc-------cCcchhhhccCCccccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccc-cEEEEee
Q psy15223 2091 KSNDTLDVW---FD-------SGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHG 2159 (2492)
Q Consensus 2091 ~~~dvlDvW---fd-------Sg~~~~~~~~~~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pf-k~v~~hG 2159 (2492)
.+.-+=+|| |- +.++-......+.+|++|||.|++++|+|++.+|+...|+.+++++.+.-| +.+.++|
T Consensus 623 ~~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNG 702 (1080)
T KOG0437|consen 623 PDQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANG 702 (1080)
T ss_pred hhhcCHHHHHHhhccCCCCcCCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCccceeeCc
Confidence 333333444 21 222222222455677999999999999999999999999999999987666 7799999
Q ss_pred eEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy15223 2160 FVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPN 2238 (2492)
Q Consensus 2160 ~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~ 2238 (2492)
+++ .+++|||||.||+.+..+.|++||||+.|+.|+. ++..+|.||.+...+. ++-||++...++...+...+
T Consensus 703 HLm-LNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~AnA---aILRLyt~~ew~eEm~~~~s-- 776 (1080)
T KOG0437|consen 703 HLM-LNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANANA---AILRLYTYVEWIEEMCENRS-- 776 (1080)
T ss_pred eEE-ecchhhccccCCeeeHHHHHHHhCccceeeeeecccCCcccchhHHhcccH---HHHHHHHHHHHHHHHHhhHH--
Confidence 998 8999999999999999999999999999999995 6888999998776443 45566666665544332211
Q ss_pred ccccccc-ccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHH
Q psy15223 2239 INIIKIS-DMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTS 2317 (2492)
Q Consensus 2239 ~~~~~~~-~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~ 2317 (2492)
....+ .....||.+.+.+|.++....++|+...|..|+..-+.=+ ....++|-+.. . +.....+
T Consensus 777 --~LrtGp~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~-qaArD~Yrel~------g------~~mh~dL 841 (1080)
T KOG0437|consen 777 --SLRTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDL-QAARDMYRELC------G------EGMHRDL 841 (1080)
T ss_pred --hhccCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHH-HHHHHHHHHHh------c------ccccHHH
Confidence 01111 1237899999999999999999999999999998533222 12344553321 1 1223457
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy15223 2318 IWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKL--LYKYMILKKIRSKVMQKLEKI 2395 (2492)
Q Consensus 2318 l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l--~~~~~~~~~~r~~v~~~i~~~ 2395 (2492)
+...+++.+.||+||+||+||.||+.+..+ ..||. .+||..++...-..+ ....+.+..+|......+-..
T Consensus 842 v~r~ietqtlLLaPi~Ph~aeyiw~~~~~~------~~~v~-~~wP~~s~~~e~~~~~~~yl~~~l~r~~~~l~~~~~~k 914 (1080)
T KOG0437|consen 842 VFRFIETQTLLLAPICPHLAEYIWRTVLKK------NFSVN-VGWPFVSPPDEKLGSSALYLKRTLKRLRAELEKQMLKK 914 (1080)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhccC------Cceee-cCCCCCCCHHHHhhhhHHHHHHHHHHHHHHHHhhhchh
Confidence 888899999999999999999999998765 24454 499987764322111 133344555544443333222
Q ss_pred -HhcCCCC-CCceeEEEEEeChhhHHHHHHhHHHHHHhhhc
Q psy15223 2396 -RSTGIIG-SSLQAEIILKINKLDFEILNEFGEELKFFLLT 2434 (2492)
Q Consensus 2396 -R~~~~i~-~~~~~~v~i~~~~~~~~~l~~~~~~L~~l~~v 2434 (2492)
++.+... .+.+.+.+|+++.+..+.....-+.|..++.-
T Consensus 915 kkk~K~~~~~~~p~~~ti~Vae~fp~Wq~~cl~il~k~~~e 955 (1080)
T KOG0437|consen 915 KKKKKGAEVPSKPLKLTIYVAEEFPEWQAQCLSILQKIFCE 955 (1080)
T ss_pred hcccCCCCCCCCcceEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 2112111 23455677777665544444444444444433
No 57
>KOG0435|consensus
Probab=100.00 E-value=3.4e-87 Score=807.30 Aligned_cols=640 Identities=21% Similarity=0.298 Sum_probs=468.9
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR 525 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~ 525 (2492)
+.+++| +|++++|||+|.|||||.+.||+.|+++||+||+||+|++|+|||.+|||.|.+|.+. +++|..
T Consensus 54 d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAier---gv~P~s------ 123 (876)
T KOG0435|consen 54 DKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIER---GVHPAS------ 123 (876)
T ss_pred ccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhc---CCCchh------
Confidence 456677 5679999999999999999999999999999999999999999999999999999876 899988
Q ss_pred HHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceec
Q psy15223 526 ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYD 605 (2492)
Q Consensus 526 ~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~ 605 (2492)
|..++|+.|++|+++||+++||||+..|++|+|++++||+|.+||++||.||...+|||||.++|+||+++|.-. +
T Consensus 124 -WT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~---G 199 (876)
T KOG0435|consen 124 -WTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDAD---G 199 (876)
T ss_pred -hhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhccc---C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999411 1
Q ss_pred cEE--------------EEEee-----cCCc-h------hhh--------------hhhccCCCCCCCeEEEEEecCCcc
Q psy15223 606 FSI--------------YVGFS-----FSEP-E------KIK--------------SIFNLKNLPSGKGYIVIWTSTPWT 645 (2492)
Q Consensus 606 ~s~--------------yv~f~-----~~~~-~------~~~--------------~~~~~~~~~~~~~~~~iwTTtPwT 645 (2492)
.|+ +++-. +.+. + .+. ..|.+...++.+..|.||||+|+|
T Consensus 200 ~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el~F~ll~~~~~de~ltv~Tt~Pet 279 (876)
T KOG0435|consen 200 CSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAELMFPLLDDGSNDEILTVYTTRPET 279 (876)
T ss_pred ccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceEEEEEeccCCCCCceEEEEecCchh
Confidence 111 11100 0000 0 000 001111112335789999999999
Q ss_pred cccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEE
Q psy15223 646 IPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIY 725 (2492)
Q Consensus 646 l~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii 725 (2492)
|++.+.+++.|++..+.... ++.+.+. .-.+. . +|- +.+..+.+|++ ++.+||+
T Consensus 280 l~~~~f~vl~~~H~L~~~~~------------~lkefl~-~~~l~----~--Kg~-~lp~~A~Np~t------g~~iPv~ 333 (876)
T KOG0435|consen 280 LFGASFLVLAPSHSLLDKDS------------SLKEFLS-KSDLP----Q--KGV-QLPCQAKNPVT------GRAIPVV 333 (876)
T ss_pred hccceEEEEcCCchhhhhhc------------hHHHhhh-hhhcc----c--cCc-ccceeeccCCC------CceeeEE
Confidence 99999999999987443221 1111111 10000 0 122 23356677777 9999999
Q ss_pred ecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccc-cCCCCcccccCCCCCC-cchhhchHHHHHHHHhcCCee
Q psy15223 726 LGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP-VMDDGNFISTLPLFGG-MSIWKASKLICSYLKKSKTLF 803 (2492)
Q Consensus 726 ~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~-vd~~G~~~~~~~~~~G-~~v~~a~~~i~~~L~~~g~l~ 803 (2492)
.++||....|||+|+.+|+|+.+|++++++-++.....+++ .++.|+-+.. ..+.| +..++|...|++.++..|.--
T Consensus 334 ~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~-~~~tn~~~~q~a~~~l~~~~~~~g~g~ 412 (876)
T KOG0435|consen 334 VADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQ-KAFTNLDIRQNAALKLFQFAERKGVGG 412 (876)
T ss_pred EechhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhcc-ccccchhHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999966532222222 2445554432 23456 333456667777766554311
Q ss_pred eeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccc
Q psy15223 804 NIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQR 883 (2492)
Q Consensus 804 ~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr 883 (2492)
. .- .. .++||.|||||
T Consensus 413 ~----~v-----------------------------------------------------s~-------kLkDWLiSRQR 428 (876)
T KOG0435|consen 413 Y----VV-----------------------------------------------------SY-------KLKDWLISRQR 428 (876)
T ss_pred c----ee-----------------------------------------------------cc-------hhhhhhhhhhh
Confidence 0 00 00 13599999999
Q ss_pred cCCceeeEEEECCCCccccCcHHHHHHHHHH--HhhcC-----CccccccCchhhcCCCccCceecCCcccccccccccc
Q psy15223 884 HWGVPIAFFIHKKSGKLHPKTLELIELIAKK--IELNG-----IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 956 (2492)
Q Consensus 884 ~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~--~~~~g-----~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~ 956 (2492)
+||+|||+++|++||.+.+...++.-.++++ +...| .+.|.+..++. .++.-+||+||||+|+||+|+|
T Consensus 429 yWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~----cg~pAkRETDTMDTFvDSsWYY 504 (876)
T KOG0435|consen 429 YWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPR----CGEPAKRETDTMDTFVDSSWYY 504 (876)
T ss_pred ccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCcc----CCCcccccccccchhhccceee
Confidence 9999999999999997654444433333322 12222 35666665543 3557799999999999999999
Q ss_pred chhcccCccc--------cCCcCeeeeecccccchhhH------HHHHHHHHHhcCCCCceEEEEeeEEEcC------CC
Q psy15223 957 QTVIRGSHKK--------QLIFPADLYLEGSDQHRGWF------HSSLLTSIILNKSAPYKALLTHGFVVDS------KG 1016 (2492)
Q Consensus 957 ~~~~~~~~~~--------~~~~p~Dl~~~G~D~~rgwf------~s~l~~~~~~~~~~p~k~v~~hG~vld~------~G 1016 (2492)
+.+++..+.. .+|+|+|+|++|++|.--|+ +..|-..-+..+..||+.++++|||... .|
T Consensus 505 lRylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG 584 (876)
T KOG0435|consen 505 LRYLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESG 584 (876)
T ss_pred EeecCCCCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCC
Confidence 9999765421 68999999999999973332 2223333345678999999999998621 12
Q ss_pred -------------------------------ccccccCCCccCcchhhhhcChhhHHHHhh-ccCcccccccCHHHHHHH
Q psy15223 1017 -------------------------------KKMSKSKGNIIKPQKLCNLFGAEILRLWVA-STDYSKDLSISNEILNRV 1064 (2492)
Q Consensus 1017 -------------------------------~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~-s~~~~~d~~fs~~~l~~~ 1064 (2492)
+|||||++|+|+|.+++++||+|++|++++ +++++++++|+++.+..+
T Consensus 585 ~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi 664 (876)
T KOG0435|consen 585 KYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGI 664 (876)
T ss_pred ccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhH
Confidence 599999999999999999999999999988 578899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHhhhhhhhH
Q psy15223 1065 VETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIVSKLQIYCSEDLGSFY 1143 (2492)
Q Consensus 1065 ~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~~~l~~f~~~~ls~~Y 1143 (2492)
.+.+.|+|++...++..-.+-.+.............++-+.+..|.+++.+++.|+ .+.++.|+..+|.|.| .|...+
T Consensus 665 ~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN-~l~~a~ 743 (876)
T KOG0435|consen 665 KRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTN-ALKKAL 743 (876)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHhh
Confidence 99999999988777654222111111111222345667889999999999999999 6779999999999984 454433
Q ss_pred HHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCce-eeccCCCCcc
Q psy15223 1144 LDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETI-FTQLHYKLPK 1217 (2492)
Q Consensus 1144 l~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV-~~~~wp~~~~ 1217 (2492)
|.-+ ..+. .....|..++.+|+|++||+|+|+|+.|+.. .+. -...||+.++
T Consensus 744 ----k~~~----~h~~-------~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~-------~~~~~~~~WP~vd~ 796 (876)
T KOG0435|consen 744 ----KIVL----VHSP-------EFERALEALVIMLAPFAPHVASELWSALAND-------LSWVSDVKWPEVDP 796 (876)
T ss_pred ----hhhh----hcCh-------HHHHHHHHHHHHHhccCchhHHHHHHHHhcc-------ccchhccCCccCCh
Confidence 2111 0111 1234677889999999999999999999853 122 1125998654
No 58
>KOG0437|consensus
Probab=100.00 E-value=1.9e-77 Score=724.51 Aligned_cols=784 Identities=18% Similarity=0.211 Sum_probs=582.1
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHh------Cc------
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLY------GK------ 513 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~------~~------ 513 (2492)
.++++||+.+.|.||+||.||+||+++-...|+..-|+||+|++|+||+|++|.|+||-..|+|.. |.
T Consensus 40 ~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~ 119 (1080)
T KOG0437|consen 40 QKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPE 119 (1080)
T ss_pred ccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCch
Confidence 356899999999999999999999999999999999999999999999999999999999887742 11
Q ss_pred ---------------------------------------------CCCHHHHHHH--HHHHHHHHHHHHHHHHHHccccc
Q psy15223 514 ---------------------------------------------NLSPIEIQNK--ARALAYEKIEQQKMDFMRLGILG 546 (2492)
Q Consensus 514 ---------------------------------------------~~~~~e~~~~--~~~~a~~~i~~~~~~~~~lGi~~ 546 (2492)
+++.+||.+. +..|...+--...++++++|.-+
T Consensus 120 e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~i 199 (1080)
T KOG0437|consen 120 EEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLGI 199 (1080)
T ss_pred hhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCCc
Confidence 3555666554 45778888888889999999999
Q ss_pred cccCeeecCC--hHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEEEEeecCCchhhhhhh
Q psy15223 547 EWDNSYKTMD--FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIF 624 (2492)
Q Consensus 547 Dw~~~y~T~d--~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~yv~f~~~~~~~~~~~~ 624 (2492)
||+|.|.|+| |.|.+++.|+|.+|.+.|-|..|.|-..|||.++.+..|++..-.|.+.|.-|+..++.-.+.....+
T Consensus 200 DWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR~sGEgV~PqeytliKle~le~~p~~l 279 (1080)
T KOG0437|consen 200 DWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVGPQEYTLIKLEVLEPFPKAL 279 (1080)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccccccCCCCCcceEEEEEEEecccchhhc
Confidence 9999999988 99999999999999999999999999999999999999999999999999999877664322111111
Q ss_pred ccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHc-CC---cCcEEEEEecc
Q psy15223 625 NLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF-GF---KGNIIGICKGI 700 (2492)
Q Consensus 625 ~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~-~~---~~~~~~~~~G~ 700 (2492)
....+.++|++.+|.||+|++|.+.++|+|+.+|..++..+ +.+++|..+....++.-+- .. ....+.++.|.
T Consensus 280 --~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~-~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~ 356 (1080)
T KOG0437|consen 280 --SSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACN-ETEVFIATERAARNMSYQKLTKERGVVSCLVTITGY 356 (1080)
T ss_pred --cccccceeeeeehhcCCccccCccceEEcCCccEEeEEecC-CceEEEeehHHHhhcchhhccccCCcccceeeecch
Confidence 11234568999999999999999999999999999999875 4578887766666553221 11 12344799999
Q ss_pred cccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHH-------cCCCCC-------Ccccc
Q psy15223 701 KLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKK-------QNMKDS-------DIINP 766 (2492)
Q Consensus 701 ~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~-------~~l~~~-------~~~~~ 766 (2492)
+|.|..+..|++. ...+.++|+..|..++|||+|.++|+..||||...+. |||.++ |++..
T Consensus 357 ~~iGa~l~aPlsv-----~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~ 431 (1080)
T KOG0437|consen 357 DLIGAPLSAPLSV-----YERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRI 431 (1080)
T ss_pred hhcCCcccCcchh-----hheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeec
Confidence 9999999999985 4567899999999999999999999999999998732 455433 11111
Q ss_pred --------------------cC----------------CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeecc
Q psy15223 767 --------------------VM----------------DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEH 810 (2492)
Q Consensus 767 --------------------vd----------------~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h 810 (2492)
-| .+|.|. .+.|.|.+|.++.+.|-.+|.+.|.++...+.+.
T Consensus 432 ~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~ml--ig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEk 509 (1080)
T KOG0437|consen 432 PGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTML--IGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEK 509 (1080)
T ss_pred cccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEE--EeccccccHHhhhhHHHHHHHhcccceeecCcch
Confidence 01 122222 2789999999999999999999999999887776
Q ss_pred ccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceee
Q psy15223 811 SYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIA 890 (2492)
Q Consensus 811 ~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP 890 (2492)
.+. .|||+.||+.+++|||+++.. ++||+.+.+.|++++.+.+..|+.++..|+|+..|.+||..+.|++||
T Consensus 510 qVm--SRSGdeCiVAL~DQWYldYgE------~eWKk~a~~cLe~l~~f~dEtR~~fE~tLdWL~~wacsRsyGLGTrlP 581 (1080)
T KOG0437|consen 510 QVM--SRSGDECIVALCDQWYLDYGE------AEWKKQAKECLENLNTFSDETRNGFEDTLDWLGQWACSRSYGLGTRLP 581 (1080)
T ss_pred hhh--ccCCCceEEEeccchhhhcCc------HHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHHhhhhhccccCCCCCC
Confidence 664 499999999999999999987 569999999999998888888999999999999999999999999999
Q ss_pred EEEECCCCccccCcHHHHHHHHHHHhhcCCccccccCchhhcCC--CccCceecCCccccc---ccccc-------ccch
Q psy15223 891 FFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD--DAVNYKKSNDTLDVW---FDSGI-------THQT 958 (2492)
Q Consensus 891 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~~~~~--~~~~~~~~~dvlDvW---fdSg~-------~~~~ 958 (2492)
| ++..+|+++.+.......-.--.+--.++-|. .+-.+..+.-+=+|| |--+. .-..
T Consensus 582 W-----------D~qyLvESLSDSTIYmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~~e~ 650 (1080)
T KOG0437|consen 582 W-----------DEQYLVESLSDSTIYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIPEEA 650 (1080)
T ss_pred C-----------cHHHHHHhcchhHHHHHHHHHHHHHHHhhccCCcccCCCChhhcCHHHHHHhhccCCCCcCCCccHHH
Confidence 8 33344555544432221000000000011111 111233333334455 21111 1111
Q ss_pred hcccCccccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCc-eEEEEeeEEEcCCCccccccCCCccCcchhhhhcC
Q psy15223 959 VIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFG 1037 (2492)
Q Consensus 959 ~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~-k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yG 1037 (2492)
....+.++++|||.|+++.|+|++.+|+...|++++|+....-| +.+.++|+++ .+++|||||.||+.+.++.|++||
T Consensus 651 L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLm-LNsEKMSKSTGNfmTL~qaieKFg 729 (1080)
T KOG0437|consen 651 LSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLM-LNSEKMSKSTGNFMTLEQAIEKFG 729 (1080)
T ss_pred HHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEE-ecchhhccccCCeeeHHHHHHHhC
Confidence 22334567999999999999999999999999999999887666 8899999998 899999999999999999999999
Q ss_pred hhhHHHHhhc-cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccc-cchHHHHHHHHHHHHHHHH
Q psy15223 1038 AEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISD-MVEIDKYAIINITNLQKEI 1115 (2492)
Q Consensus 1038 aD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~-~~~~D~~il~~l~~~~~~v 1115 (2492)
||+.|+.|+. +|-.+|.||.+...+.+ +.||.+...++...+...+ .+..+. ....||.+.+.+|.++...
T Consensus 730 ad~tRlalAdaGD~veDANF~ea~AnAa---ILRLyt~~ew~eEm~~~~s----~LrtGp~~~FaDrvf~nemN~~i~~t 802 (1080)
T KOG0437|consen 730 ADGTRLALADAGDGVEDANFVEANANAA---ILRLYTYVEWIEEMCENRS----SLRTGPASTFADRVFENEMNALIAKT 802 (1080)
T ss_pred ccceeeeeecccCCcccchhHHhcccHH---HHHHHHHHHHHHHHHhhHH----hhccCchhhHHHHHHHHHHHHHHHHH
Confidence 9999999995 67789999998765544 5566666666544332211 111111 2378999999999999999
Q ss_pred HHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhh--ccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Q psy15223 1116 LSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRL--YTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSI 1193 (2492)
Q Consensus 1116 ~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl--~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~ 1193 (2492)
.++|+...|..|+..- |. =+...||.. .|. +......++..+++.+.||+||+||+||.||+.
T Consensus 803 ~~aye~~~fk~aLK~G--fy-------d~qaArD~Yrel~g------~~mh~dLv~r~ietqtlLLaPi~Ph~aeyiw~~ 867 (1080)
T KOG0437|consen 803 ERAYEDTLFKDALKYG--FY-------DLQAARDMYRELCG------EGMHRDLVFRFIETQTLLLAPICPHLAEYIWRT 867 (1080)
T ss_pred HHHHHHhHHHHHHHhh--hH-------HHHHHHHHHHHHhc------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 9999999999999842 21 123334432 222 123446788889999999999999999999999
Q ss_pred ccCCCccccCCCceeeccCCCCcccCCchHH--HHHHHHHHHHHHHHHHHHHHH-HhhCCCC-CCcceEEEEEeCchhHH
Q psy15223 1194 FSDKNFYIESGETIFTQLHYKLPKVYNSKKL--LYKYMILKKIRSKVMQKLEKI-RSTGIIG-SSLQAEIILKINKLDFE 1269 (2492)
Q Consensus 1194 l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~--~~~~~~~~~lr~~v~~~le~~-R~~k~i~-~s~~a~v~i~~~~~~~~ 1269 (2492)
+..+ ..||.. .||..++...-... ....+.+..+|....+++-.. ++.|..- .+.+.+.+|.+..+..+
T Consensus 868 ~~~~------~~~v~~-~wP~~s~~~e~~~~~~~yl~~~l~r~~~~l~~~~~~kkkk~K~~~~~~~p~~~ti~Vae~fp~ 940 (1080)
T KOG0437|consen 868 VLKK------NFSVNV-GWPFVSPPDEKLGSSALYLKRTLKRLRAELEKQMLKKKKKKKGAEVPSKPLKLTIYVAEEFPE 940 (1080)
T ss_pred hccC------Cceeec-CCCCCCCHHHHhhhhHHHHHHHHHHHHHHHHhhhchhhcccCCCCCCCCcceEEEEEeccCCH
Confidence 8764 345554 99987654322111 233455555555555444333 2222221 24455667776654433
Q ss_pred HHHHhHHHHHHhhhccceE
Q psy15223 1270 ILNEFGEELKFFLLTSSVS 1288 (2492)
Q Consensus 1270 ~l~~~~~~L~~l~~vs~v~ 1288 (2492)
--...-+.|..++.-+.+.
T Consensus 941 Wq~~cl~il~k~~~e~~~~ 959 (1080)
T KOG0437|consen 941 WQAQCLSILQKIFCEQTGK 959 (1080)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 2233334455555544443
No 59
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1e-77 Score=761.03 Aligned_cols=370 Identities=30% Similarity=0.540 Sum_probs=334.2
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc------CCCHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK------NLSPIEIQNK 523 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~------~~~~~e~~~~ 523 (2492)
|+|+|++|||||||.|||||+++++++|+++||+||+|++|+|++||||||+|||.+|+++++. ++++++|++.
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999998654 5799999999
Q ss_pred HHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccce
Q psy15223 524 ARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKK 603 (2492)
Q Consensus 524 ~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~ 603 (2492)
|+++++++++.++++|++||+++||+++|.|+||.|.+.++++|.+|+++|+||++.++|+|||.|+|+||++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev----- 155 (382)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV----- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999865210
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCc
Q psy15223 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 763 (2492)
Q Consensus 684 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~ 763 (2492)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhH
Q psy15223 764 INPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKK 843 (2492)
Q Consensus 764 ~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~ 843 (2492)
|||||+|++++.++|||+++++
T Consensus 156 ---------------------------------------------------c~~cg~~~~~~~~~qwf~~l~~------- 177 (382)
T cd00817 156 ---------------------------------------------------CSRSGDVIEPLLKPQWFVKVKD------- 177 (382)
T ss_pred ---------------------------------------------------cccCCCeEEEEecCeeEEehHH-------
Confidence 8999999999999999999998
Q ss_pred HHHHHHHHHhhc--ceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCc
Q psy15223 844 SLRESAITAINK--IKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 921 (2492)
Q Consensus 844 ~~~~~~~~~i~~--v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 921 (2492)
+++++++.+++ ++|+|+..++++.+||++++||||||||.||+|||+|+|.+||+... .....+.+....
T Consensus 178 -~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~-~~~~~~~~~~~~------ 249 (382)
T cd00817 178 -LAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWVV-AREEDEAIDKAA------ 249 (382)
T ss_pred -HHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEEe-cchhHHHHHHhc------
Confidence 99999999988 99999999999999999999999999999999999999999998652 222222221111
Q ss_pred cccccCchhhcCCCccCceecCCccccccccccccchhcccCc---cccCCcCeeeeecccccchhhHHHHHHHHHHhcC
Q psy15223 922 IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNK 998 (2492)
Q Consensus 922 ~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~ 998 (2492)
+....++++..+++++|||||||||+++|++.++... +++.+||+|+|++|+||+|+|+.++++.+.++.+
T Consensus 250 ------~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g 323 (382)
T cd00817 250 ------PEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTG 323 (382)
T ss_pred ------cccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhhC
Confidence 1111234566899999999999999999999887532 2367899999999999999999999999999999
Q ss_pred CCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCccccccc
Q psy15223 999 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 1056 (2492)
Q Consensus 999 ~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~f 1056 (2492)
..||+++++||+++|.+|+|||||+||+|+|+|++++||+|++|||+++ .++.+|.+|
T Consensus 324 ~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 324 KLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred CCchHHeEeeeeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 9999999999999999999999999999999999999999999999997 457888876
No 60
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=2.8e-76 Score=748.03 Aligned_cols=370 Identities=30% Similarity=0.541 Sum_probs=333.0
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhcc------CCCHHHHHHH
Q psy15223 1600 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK------NLSPIEIQNK 1673 (2492)
Q Consensus 1600 ~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~------~~~~~e~~~~ 1673 (2492)
++|+|++|||||||.|||||+++++++||++||+||+|++|+|++|||+||+|||.+|+++++. ++++++|++.
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999998654 5899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceee
Q psy15223 1674 ARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKK 1753 (2492)
Q Consensus 1674 ~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~ 1753 (2492)
|++++.++++.++++|++||+++||+++|.|+||.|.+.++++|.+|+++|+||++.++|+|||.|+|+|||+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev----- 155 (382)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV----- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999866210
Q ss_pred ecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHH
Q psy15223 1754 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 1833 (2492)
Q Consensus 1754 ~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 1833 (2492)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCc
Q psy15223 1834 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 1913 (2492)
Q Consensus 1834 ~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~ 1913 (2492)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhH
Q psy15223 1914 INPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKK 1993 (2492)
Q Consensus 1914 ~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~ 1993 (2492)
|||||+|++++.++|||+++++
T Consensus 156 ---------------------------------------------------c~~cg~~~~~~~~~qwf~~l~~------- 177 (382)
T cd00817 156 ---------------------------------------------------CSRSGDVIEPLLKPQWFVKVKD------- 177 (382)
T ss_pred ---------------------------------------------------cccCCCeEEEEecCeeEEehHH-------
Confidence 8999999999999999999999
Q ss_pred HHHHHHHHhhhc--ceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcc
Q psy15223 1994 SLRESAITAINK--IKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 2071 (2492)
Q Consensus 1994 ~~k~~~~~~~~~--v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 2071 (2492)
+++++++.+++ ++|+|++.++++.+||++++||||||||+||+|||+|+|.+|+.+.+.... ...+....
T Consensus 178 -~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~-~~~~~~~~------ 249 (382)
T cd00817 178 -LAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREE-DEAIDKAA------ 249 (382)
T ss_pred -HHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEEecchh-HHHHHHhc------
Confidence 99999999987 999999999999999999999999999999999999999998876432221 11111110
Q ss_pred cccccchhhhcCCCccCceecccccccccccCcchhhhccCCc---cccCCcCceeeecccchhhhhHHHHHHHHHHhcC
Q psy15223 2072 IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNK 2148 (2492)
Q Consensus 2072 ~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~ 2148 (2492)
+....++++..+++++|||||||||+++|++.++... +++.+||+|+|++|+||+|+|+.++++.+.++.+
T Consensus 250 ------~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g 323 (382)
T cd00817 250 ------PEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTG 323 (382)
T ss_pred ------cccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhhC
Confidence 0111233456799999999999999999999886432 2356899999999999999999999999999989
Q ss_pred CccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccc
Q psy15223 2149 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 2206 (2492)
Q Consensus 2149 ~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~f 2206 (2492)
..||+++++||+|+|.+|+|||||+||+|+|.|++++||+|++|||+++ +++.+|.+|
T Consensus 324 ~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 324 KLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred CCchHHeEeeeeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 8999999999999999999999999999999999999999999999997 568888876
No 61
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.3e-75 Score=776.66 Aligned_cols=498 Identities=20% Similarity=0.311 Sum_probs=392.6
Q ss_pred CcEEEEcCCCCCCCcccchHhhhh-HHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNK-ILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 528 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~-ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a 528 (2492)
++|+|+.|||||||.|||||++++ +++|+++||+||+|++|.|++|||+||+||+.+|++. +.++.+ +|
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~---g~~~~~-------~~ 72 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKE---GVTPQE-------LA 72 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHc---CCCHHH-------HH
Confidence 479999999999999999999997 9999999999999999999999999999999999986 778766 89
Q ss_pred HHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEE
Q psy15223 529 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 608 (2492)
Q Consensus 529 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~ 608 (2492)
.++.+.+++++++||| +||.+++|+||+|.+.++++|.+|+++|+||++..+|+|||.|+|+|++++|..
T Consensus 73 ~~~~~~~~~~~~~l~i--~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g-------- 142 (556)
T PRK12268 73 DKYHEEHKEDFKKLGI--SYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEG-------- 142 (556)
T ss_pred HHHHHHHHHHHHHcCC--cCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceec--------
Confidence 9999999999999999 566789999999999999999999999999999999999999999999865530
Q ss_pred EEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC
Q psy15223 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 688 (2492)
Q Consensus 609 yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 688 (2492)
+.|. + ..
T Consensus 143 --------------------------------~cp~----c------~~------------------------------- 149 (556)
T PRK12268 143 --------------------------------TCPY----C------GY------------------------------- 149 (556)
T ss_pred --------------------------------cCCC----C------CC-------------------------------
Confidence 1110 0 00
Q ss_pred CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC
Q psy15223 689 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768 (2492)
Q Consensus 689 ~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd 768 (2492)
.+
T Consensus 150 ------------------------------------------------------------------------------~~ 151 (556)
T PRK12268 150 ------------------------------------------------------------------------------EG 151 (556)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 769 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 848 (2492)
Q Consensus 769 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~ 848 (2492)
.+|...+.++. .+.. .+..-|+|+|||+|+++++++|||+++++ ++++
T Consensus 152 ~~G~~ce~cg~----------------------~~~~--~~l~~p~~~~~~~~~e~~~~~qwF~~l~~--------~~~~ 199 (556)
T PRK12268 152 ARGDQCDNCGA----------------------LLDP--TDLINPRSKISGSTPEFRETEHFFLDLPA--------FAER 199 (556)
T ss_pred cCCchhhhccc----------------------cCCh--HHhcCCccccCCCcCeEEecceEEEEhHH--------HHHH
Confidence 01111111100 0000 00112899999999999999999999988 9999
Q ss_pred HHHHhhcceEecchhhHHHHHHHh-cCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccccC
Q psy15223 849 AITAINKIKFFPSWGKDRLKSMIL-NRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLD 927 (2492)
Q Consensus 849 ~~~~i~~v~~~P~~~~~rl~~~l~-~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~ 927 (2492)
++++++++.|+|+..++++.+||+ +++||||||||+||+||| |++.+
T Consensus 200 l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP-~~~~~------------------------------- 247 (556)
T PRK12268 200 LRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP-WPGFE------------------------------- 247 (556)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCC-CCCCC-------------------------------
Confidence 999999899999999999999999 999999999999999999 54322
Q ss_pred chhhcCCCccCceecCCccccccccccccchhccc-------CccccCCc----CeeeeecccccchhhHHHHHHHHHHh
Q psy15223 928 IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-------SHKKQLIF----PADLYLEGSDQHRGWFHSSLLTSIIL 996 (2492)
Q Consensus 928 ~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~-------~~~~~~~~----p~Dl~~~G~D~~rgwf~s~l~~~~~~ 996 (2492)
..++|||||+.+.+.+.+.. ...+..+| |.++++.|+|+++ ||.+++++.++
T Consensus 248 ---------------~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~--Fh~~~~p~~l~ 310 (556)
T PRK12268 248 ---------------GKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIP--FHSIIWPAMLL 310 (556)
T ss_pred ---------------CcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCc--chHHHHHHHHH
Confidence 23455555544443322111 00112233 6689999999998 88888888765
Q ss_pred cCC---CCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc-CcccccccCHHHHHHH--HHHHHH
Q psy15223 997 NKS---APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRV--VETYRR 1070 (2492)
Q Consensus 997 ~~~---~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~--~~~~~k 1070 (2492)
... .+.+++++|||+++ +|+|||||+||+|+|.|++++||+|++|||+++. +..+|++|+++.+... .+..++
T Consensus 311 ~~~~~~~~P~~v~~~G~v~~-~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~ 389 (556)
T PRK12268 311 GSGEPLKLPDEIVSSEYLTL-EGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADK 389 (556)
T ss_pred hcCCCCCCCCEeeccCCEEE-CCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhh
Confidence 433 22369999999984 8999999999999999999999999999999974 6779999999987653 245667
Q ss_pred HHHHHHHHhhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhh
Q psy15223 1071 IRNTLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKD 1149 (2492)
Q Consensus 1071 l~n~~rf~l~~l~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kd 1149 (2492)
++|.+.++...+.+ ++. ..+...+...|+|++++++++++.+.++|++|+|+.|++.+++|+ +++++|++..|+
T Consensus 390 l~n~~~r~~~~~~~~~~~---~~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~--~~~n~yi~~~kp 464 (556)
T PRK12268 390 YGNLVNRVLSFIEKYFGG---IVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELA--REANKYLDEKAP 464 (556)
T ss_pred HHHHHHHHHHHHHHhcCC---cCCCCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHcCCC
Confidence 78875544332211 110 011234577899999999999999999999999999999999999 589999999999
Q ss_pred hhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCC
Q psy15223 1150 RLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYK 1214 (2492)
Q Consensus 1150 rl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~ 1214 (2492)
+.... .+....+.++.++.++++.++++|+|||||+|||||+.|+. +++....||.
T Consensus 465 w~~~~-~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~--------~~~~~~~w~~ 520 (556)
T PRK12268 465 WKLAK-TDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGG--------ENIEKLTWES 520 (556)
T ss_pred hhhhc-CCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCC--------CCCcccchhh
Confidence 76553 23344456667777899999999999999999999999964 1344556765
No 62
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.9e-74 Score=771.45 Aligned_cols=500 Identities=20% Similarity=0.314 Sum_probs=393.4
Q ss_pred CcEEEEcCCCCCCCcccchHhhhh-HHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHH
Q psy15223 1600 PKFILHDGPPYANGDIHIGHAVNK-ILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 1678 (2492)
Q Consensus 1600 ~~f~i~~~pPy~nG~lHlGH~~~~-~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~ 1678 (2492)
++|+|+.|||||||.|||||++++ +++|+++||+||+|++|.|++|||+||+||+.+|++. ++++.+ ++
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~---g~~~~~-------~~ 72 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKE---GVTPQE-------LA 72 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHc---CCCHHH-------HH
Confidence 579999999999999999999997 9999999999999999999999999999999999986 778766 89
Q ss_pred HHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceE
Q psy15223 1679 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 1758 (2492)
Q Consensus 1679 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~ 1758 (2492)
.++.+.+++++++||++ |+.+++|+||+|.+.++++|.+|+++|+||++..+|+|||.|+|+|++.+|.-
T Consensus 73 ~~~~~~~~~~~~~l~i~--~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g-------- 142 (556)
T PRK12268 73 DKYHEEHKEDFKKLGIS--YDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEG-------- 142 (556)
T ss_pred HHHHHHHHHHHHHcCCc--CCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceec--------
Confidence 99999999999999995 56789999999999999999999999999999999999999999999865430
Q ss_pred EEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1759 yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
+.|.
T Consensus 143 --------------------------------~cp~-------------------------------------------- 146 (556)
T PRK12268 143 --------------------------------TCPY-------------------------------------------- 146 (556)
T ss_pred --------------------------------cCCC--------------------------------------------
Confidence 0010
Q ss_pred CcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC
Q psy15223 1839 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 1918 (2492)
Q Consensus 1839 ~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd 1918 (2492)
++. .+
T Consensus 147 --------------------------------------------------------c~~-------------------~~ 151 (556)
T PRK12268 147 --------------------------------------------------------CGY-------------------EG 151 (556)
T ss_pred --------------------------------------------------------CCC-------------------cc
Confidence 000 00
Q ss_pred CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1919 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1919 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
.+|.+++.+|.. + +..+..-|+|+|||++++++.++|||+++++ ++++
T Consensus 152 ~~G~~ce~cg~~----------------------~--~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~--------~~~~ 199 (556)
T PRK12268 152 ARGDQCDNCGAL----------------------L--DPTDLINPRSKISGSTPEFRETEHFFLDLPA--------FAER 199 (556)
T ss_pred cCCchhhhcccc----------------------C--ChHHhcCCccccCCCcCeEEecceEEEEhHH--------HHHH
Confidence 111111111110 0 0001112899999999999999999999988 9999
Q ss_pred HHHhhhcceEecccchhHHHHhhh-CCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccc
Q psy15223 1999 AITAINKIKFFPSWGKDRLKSMIL-NRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLD 2077 (2492)
Q Consensus 1999 ~~~~~~~v~~~P~~~~~~~~~~l~-~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~ 2077 (2492)
++++++++.++|+..++++.+||+ +++||||||||+||+||| |++.+
T Consensus 200 l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP-~~~~~------------------------------- 247 (556)
T PRK12268 200 LRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP-WPGFE------------------------------- 247 (556)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCC-CCCCC-------------------------------
Confidence 999999899999999999999999 999999999999999999 43221
Q ss_pred hhhhcCCCccCceecccccccccccCcchhhhccC-------CccccCCc----CceeeecccchhhhhHHHHHHHHHHh
Q psy15223 2078 IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-------SHKKQLIF----PADLYLEGSDQHRGWFHSSLLTSIIL 2146 (2492)
Q Consensus 2078 ~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~-------~~~~~~~~----P~Dl~~~G~D~~r~wf~~~l~~~~~l 2146 (2492)
..++|||||+.+.+.+.+.. ...++.+| |.++++.|+|+++ ||..+++++++
T Consensus 248 ---------------~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~--Fh~~~~p~~l~ 310 (556)
T PRK12268 248 ---------------GKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIP--FHSIIWPAMLL 310 (556)
T ss_pred ---------------CcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCc--chHHHHHHHHH
Confidence 23455566554444332210 01111233 5689999999998 88888888775
Q ss_pred cCC---ccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHH--HHHHHH
Q psy15223 2147 NKS---APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRV--VETYRR 2220 (2492)
Q Consensus 2147 ~~~---~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~--~~~~~k 2220 (2492)
... .+++++++|||++ .+|+|||||+||+|+|.+++++||+|++|||+++ ++..+|++|+++.+... .+.+++
T Consensus 311 ~~~~~~~~P~~v~~~G~v~-~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~ 389 (556)
T PRK12268 311 GSGEPLKLPDEIVSSEYLT-LEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADK 389 (556)
T ss_pred hcCCCCCCCCEeeccCCEE-ECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhh
Confidence 433 2236999999998 4899999999999999999999999999999996 46789999999987653 345567
Q ss_pred HHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhh
Q psy15223 2221 IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDR 2300 (2492)
Q Consensus 2221 l~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~ 2300 (2492)
++|.+.++...+...... ..+...+...|+|++++++++++.+.++|++|+|+.|++.+++|+ +++|+|++..|++
T Consensus 390 l~n~~~r~~~~~~~~~~~--~~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~--~~~n~yi~~~kpw 465 (556)
T PRK12268 390 YGNLVNRVLSFIEKYFGG--IVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELA--REANKYLDEKAPW 465 (556)
T ss_pred HHHHHHHHHHHHHHhcCC--cCCCCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHcCCCh
Confidence 888755443221110000 011233567899999999999999999999999999999999999 5999999999987
Q ss_pred hccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCC
Q psy15223 2301 LYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKL 2365 (2492)
Q Consensus 2301 l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~ 2365 (2492)
.... .+......++.++.++++.++++|+|||||+|||||+.|+.. ++..+.||..
T Consensus 466 ~~~~-~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~~--------~~~~~~w~~~ 521 (556)
T PRK12268 466 KLAK-TDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGE--------NIEKLTWESL 521 (556)
T ss_pred hhhc-CCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCCC--------CCcccchhhh
Confidence 6543 233444566677778999999999999999999999999642 4555677753
No 63
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=5.7e-73 Score=754.75 Aligned_cols=484 Identities=25% Similarity=0.339 Sum_probs=403.8
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHH
Q psy15223 452 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 531 (2492)
Q Consensus 452 f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~ 531 (2492)
|+|++|||||||.+||||+++++.+|+++||+||+|++|.|++|||+||+||+.+|+++ +++|.+ +++++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~---g~~~~e-------~~~~~ 70 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE---GLTPKE-------LVDKY 70 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHc---CCCHHH-------HHHHH
Confidence 68999999999999999999999999999999999999999999999999999999886 778876 78889
Q ss_pred HHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEEEE
Q psy15223 532 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVG 611 (2492)
Q Consensus 532 i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~yv~ 611 (2492)
.+.+++++++|||.. |..++|+++.|...++++|.+|+++|+||++..+|+||+.|+|+|+|++|+..
T Consensus 71 ~~~~~~~l~~LgI~~--D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~---------- 138 (530)
T TIGR00398 71 HEEFKDDWKWLNISF--DRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGT---------- 138 (530)
T ss_pred HHHHHHHHHHhCCCC--CCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCC----------
Confidence 999999999999965 56788999999999999999999999999999999999999999999876410
Q ss_pred eecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCCcC
Q psy15223 612 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKG 691 (2492)
Q Consensus 612 f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~ 691 (2492)
T Consensus 139 -------------------------------------------------------------------------------- 138 (530)
T TIGR00398 139 -------------------------------------------------------------------------------- 138 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCCCC
Q psy15223 692 NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDG 771 (2492)
Q Consensus 692 ~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~~G 771 (2492)
+|.+|.+| .+|
T Consensus 139 --------------------------------------------------cp~c~~~~-------------------~~g 149 (530)
T TIGR00398 139 --------------------------------------------------CPKCGSED-------------------ARG 149 (530)
T ss_pred --------------------------------------------------CCCCCCcc-------------------ccc
Confidence 00000000 001
Q ss_pred cccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHH
Q psy15223 772 NFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAIT 851 (2492)
Q Consensus 772 ~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~ 851 (2492)
...+.++ . ..+..++..|+|||||+|++++.++|||+++++ +++++++
T Consensus 150 ~~ce~cg----------------------~--~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~--------~~~~l~~ 197 (530)
T TIGR00398 150 DHCEVCG----------------------R--HLEPTELINPRCKICGAKPELRDSEHYFFRLSA--------FEKELEE 197 (530)
T ss_pred chhhhcc----------------------c--cCCHHHhcCCccccCCCcceEEecceEEEEhHH--------HHHHHHH
Confidence 1111111 0 013344668999999999999999999999998 9999999
Q ss_pred Hhhc---ceEecchhhHHHHHHHhc-CCCeeeecccc-CCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcccccc
Q psy15223 852 AINK---IKFFPSWGKDRLKSMILN-RPDWTISRQRH-WGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNL 926 (2492)
Q Consensus 852 ~i~~---v~~~P~~~~~rl~~~l~~-~~DWcISRqr~-WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~ 926 (2492)
.+++ ..+.|+..++++.+||++ ++|||||||+. ||+|||.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~---------------------------------- 243 (530)
T TIGR00398 198 WIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPND---------------------------------- 243 (530)
T ss_pred HHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCC----------------------------------
Confidence 9984 556788899999999997 99999999999 99999952
Q ss_pred CchhhcCCCccCceecCCccccccccccccchhcccCc----cccCCcCee-----eeecccccchhhHHHHHHHHHHhc
Q psy15223 927 DIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLIFPAD-----LYLEGSDQHRGWFHSSLLTSIILN 997 (2492)
Q Consensus 927 ~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~----~~~~~~p~D-----l~~~G~D~~rgwf~s~l~~~~~~~ 997 (2492)
++++++||||+.++|++.+.... .++.+||+| +++.|+|+++ ||..+++++++.
T Consensus 244 ---------------~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~--~h~~~~~a~l~~ 306 (530)
T TIGR00398 244 ---------------PNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVR--FHTIYWPAMLMG 306 (530)
T ss_pred ---------------CCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccch--hHHHHHHHHHHh
Confidence 13589999999999887654321 235789999 9999999998 666666654442
Q ss_pred -CCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHH--HHHHHHHH
Q psy15223 998 -KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVV--ETYRRIRN 1073 (2492)
Q Consensus 998 -~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~--~~~~kl~n 1073 (2492)
+..|++++++|||+++. |+|||||+||+|+|.|++++||+|++|||+++ ++..+|++|+++.++... +.+.+++|
T Consensus 307 ~~~~~~~~~~~~g~v~~~-g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n 385 (530)
T TIGR00398 307 LGLPLPTQVFSHGYLTVE-GGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGN 385 (530)
T ss_pred CCCCCCCEEEeeccEEEC-CceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45678999999999976 99999999999999999999999999999997 567899999999998773 56788999
Q ss_pred HHHHHhhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhc
Q psy15223 1074 TLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLY 1152 (2492)
Q Consensus 1074 ~~rf~l~~l~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~ 1152 (2492)
++.++++.+.+ ++.. ........+.|+|++++++++.+.+.++|++|+|+.|++.+++|+ +++|+|++..|++.+
T Consensus 386 ~~~r~~~~~~~~~~~~--~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~~ 461 (530)
T TIGR00398 386 LLNRTLGFIKKYFNGV--LPSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLA--DRGNKYIDENKPWEL 461 (530)
T ss_pred HHHHHHHHHHHhcCCc--CCCCcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHhcCCChhh
Confidence 88766554332 1110 111122457899999999999999999999999999999999999 589999999999877
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1153 TTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1153 ~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
.. ++.++++++++++++++.++++|+|||||+|||||+.|+.
T Consensus 462 ~~--~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 503 (530)
T TIGR00398 462 FK--QSPRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNF 503 (530)
T ss_pred cC--ChHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 64 3346789999999999999999999999999999999974
No 64
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=6.8e-72 Score=744.38 Aligned_cols=484 Identities=24% Similarity=0.329 Sum_probs=402.6
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q psy15223 1602 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 1681 (2492)
Q Consensus 1602 f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~ 1681 (2492)
|+|+.|||||||.|||||+++++.+|+++||+||+|++|+|++|||+||+||+.+|+++ ++++.+ ++.++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~---g~~~~e-------~~~~~ 70 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE---GLTPKE-------LVDKY 70 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHc---CCCHHH-------HHHHH
Confidence 68999999999999999999999999999999999999999999999999999999886 788776 78889
Q ss_pred HHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceEEEE
Q psy15223 1682 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVG 1761 (2492)
Q Consensus 1682 i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~ 1761 (2492)
.+.+++++++||+++| ..++|+++.|...++++|.+|+++|+||++..+|+|||.|+|+|+|.+|+..
T Consensus 71 ~~~~~~~l~~LgI~~D--~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~---------- 138 (530)
T TIGR00398 71 HEEFKDDWKWLNISFD--RFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGT---------- 138 (530)
T ss_pred HHHHHHHHHHhCCCCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCC----------
Confidence 9999999999999754 5778999999999999999999999999999999999999999999765410
Q ss_pred EeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcC
Q psy15223 1762 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKG 1841 (2492)
Q Consensus 1762 f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~ 1841 (2492)
T Consensus 139 -------------------------------------------------------------------------------- 138 (530)
T TIGR00398 139 -------------------------------------------------------------------------------- 138 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCC
Q psy15223 1842 NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDG 1921 (2492)
Q Consensus 1842 ~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G 1921 (2492)
+|.++.+ |..|
T Consensus 139 --------------------------------------------------cp~c~~~-------------------~~~g 149 (530)
T TIGR00398 139 --------------------------------------------------CPKCGSE-------------------DARG 149 (530)
T ss_pred --------------------------------------------------CCCCCCc-------------------cccc
Confidence 0111100 0112
Q ss_pred ccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHH
Q psy15223 1922 NFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAIT 2001 (2492)
Q Consensus 1922 ~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~ 2001 (2492)
..++.|+. ..+..++..|+|+|||+|++++.++|||+++++ +++.+++
T Consensus 150 ~~ce~cg~------------------------~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~--------~~~~l~~ 197 (530)
T TIGR00398 150 DHCEVCGR------------------------HLEPTELINPRCKICGAKPELRDSEHYFFRLSA--------FEKELEE 197 (530)
T ss_pred chhhhccc------------------------cCCHHHhcCCccccCCCcceEEecceEEEEhHH--------HHHHHHH
Confidence 22222221 113445668999999999999999999999999 9999999
Q ss_pred hhhc---ceEecccchhHHHHhhhC-CCCcccccccC-CCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccccccc
Q psy15223 2002 AINK---IKFFPSWGKDRLKSMILN-RPDWTISRQRH-WGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNL 2076 (2492)
Q Consensus 2002 ~~~~---v~~~P~~~~~~~~~~l~~-~~DW~ISRqr~-WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~ 2076 (2492)
++++ ..+.|+..++.+.+||++ ++|||||||++ ||+|||.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~---------------------------------- 243 (530)
T TIGR00398 198 WIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPND---------------------------------- 243 (530)
T ss_pred HHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCC----------------------------------
Confidence 9974 556688888999999997 99999999999 99999952
Q ss_pred chhhhcCCCccCceecccccccccccCcchhhhccCCc----cccCCcCce-----eeecccchhhhhHHHHHHHHHHhc
Q psy15223 2077 DIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLIFPAD-----LYLEGSDQHRGWFHSSLLTSIILN 2147 (2492)
Q Consensus 2077 ~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~----~~~~~~P~D-----l~~~G~D~~r~wf~~~l~~~~~l~ 2147 (2492)
+++++|||||+.+.|++.+.... .++.+||.| +++.|+|+++ ||..+++++++.
T Consensus 244 ---------------~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~--~h~~~~~a~l~~ 306 (530)
T TIGR00398 244 ---------------PNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVR--FHTIYWPAMLMG 306 (530)
T ss_pred ---------------CCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccch--hHHHHHHHHHHh
Confidence 12589999999999888653321 124578999 9999999998 556666655443
Q ss_pred -CCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHH--HHHHHHHHH
Q psy15223 2148 -KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRV--VETYRRIRN 2223 (2492)
Q Consensus 2148 -~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~--~~~~~kl~n 2223 (2492)
+..|++++++|||+++. |+|||||+||+|+|.|++++||+|++|||+++ ++..+|++|+++.++.. .+.+++++|
T Consensus 307 ~~~~~~~~~~~~g~v~~~-g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n 385 (530)
T TIGR00398 307 LGLPLPTQVFSHGYLTVE-GGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGN 385 (530)
T ss_pred CCCCCCCEEEeeccEEEC-CceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45678999999999976 99999999999999999999999999999997 56899999999999876 356788999
Q ss_pred HHHHHHhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhc
Q psy15223 2224 TLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLY 2302 (2492)
Q Consensus 2224 ~~r~~~~~~~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~ 2302 (2492)
++.+++..+.+ ++.. ..........|+|++++++++.+.+.++|++|+|+.|++.+++|+ +++|+|++.+|++.+
T Consensus 386 ~~~r~~~~~~~~~~~~--~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~~ 461 (530)
T TIGR00398 386 LLNRTLGFIKKYFNGV--LPSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLA--DRGNKYIDENKPWEL 461 (530)
T ss_pred HHHHHHHHHHHhcCCc--CCCCcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHhcCCChhh
Confidence 88765543322 1110 111122457899999999999999999999999999999999999 589999999999776
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2303 TTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2303 ~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
.. +...+++++++++++++.++++|+|||||+|||||+.|+.
T Consensus 462 ~~--~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 503 (530)
T TIGR00398 462 FK--QSPRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNF 503 (530)
T ss_pred cC--ChHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 53 2336778999999999999999999999999999999974
No 65
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-71 Score=752.31 Aligned_cols=461 Identities=22% Similarity=0.344 Sum_probs=398.3
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHH
Q psy15223 449 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 528 (2492)
Q Consensus 449 ~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a 528 (2492)
+++|+|++|+|||||.+||||++++++.|+++||+||+|++|.|++|||+||+||+.+|++. +.+|.+ ++
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~---g~~~~e-------~~ 72 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKA---GKTPQE-------YV 72 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHc---CCCHHH-------HH
Confidence 35899999999999999999999999999999999999999999999999999999999876 788877 78
Q ss_pred HHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEE
Q psy15223 529 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 608 (2492)
Q Consensus 529 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~ 608 (2492)
+++.+.++++|++|||++ |+.++|+|+.+...++++|.+|+++|+||++..+++||+.|+++|+|.++.
T Consensus 73 d~~~~~fk~~l~~lgI~~--D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~--------- 141 (648)
T PRK12267 73 DEISAGFKELWKKLDISY--DKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLV--------- 141 (648)
T ss_pred HHHHHHHHHHHHHcCCCC--CCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhc---------
Confidence 889999999999999954 678999999999999999999999999999999999999999998774431
Q ss_pred EEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC
Q psy15223 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 688 (2492)
Q Consensus 609 yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 688 (2492)
T Consensus 142 -------------------------------------------------------------------------------- 141 (648)
T PRK12267 142 -------------------------------------------------------------------------------- 141 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC
Q psy15223 689 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768 (2492)
Q Consensus 689 ~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd 768 (2492)
+
T Consensus 142 ------------------------------~------------------------------------------------- 142 (648)
T PRK12267 142 ------------------------------D------------------------------------------------- 142 (648)
T ss_pred ------------------------------c-------------------------------------------------
Confidence 0
Q ss_pred CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 769 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 848 (2492)
Q Consensus 769 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~ 848 (2492)
-|+|||||+|++++.++|||+++++ ++++
T Consensus 143 -------------------------------------------~~~c~~cg~~~e~~~~~~~f~~l~~--------~~~~ 171 (648)
T PRK12267 143 -------------------------------------------GGKCPDCGREVELVKEESYFFRMSK--------YQDR 171 (648)
T ss_pred -------------------------------------------CCcCCCCCCcCeEEecceEEEEcHH--------HHHH
Confidence 0369999999999999999999998 9999
Q ss_pred HHHHhhcc-e-EecchhhHHHH-HHHhc-CCCeeeeccc-cCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccc
Q psy15223 849 AITAINKI-K-FFPSWGKDRLK-SMILN-RPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW 923 (2492)
Q Consensus 849 ~~~~i~~v-~-~~P~~~~~rl~-~~l~~-~~DWcISRqr-~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w 923 (2492)
+++.+++. . +.|+..++++. +||++ ++|||||||| .||+|||..
T Consensus 172 l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~------------------------------- 220 (648)
T PRK12267 172 LLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFD------------------------------- 220 (648)
T ss_pred HHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCC-------------------------------
Confidence 99999764 3 46999999999 99996 9999999998 699999941
Q ss_pred cccCchhhcCCCccCceecCCccccccccccccchhcccCc----cccCCcCeeeeecccccchhhHHHHHHHHHHh-cC
Q psy15223 924 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLIFPADLYLEGSDQHRGWFHSSLLTSIIL-NK 998 (2492)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~----~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~-~~ 998 (2492)
+++|+||||||+++|++.+++.. +++.+||+|+|++|+||+| ||..+|+++++ .+
T Consensus 221 ------------------~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~--fH~i~wpa~l~~~~ 280 (648)
T PRK12267 221 ------------------PKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILR--FHAIYWPIMLMALG 280 (648)
T ss_pred ------------------CCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecc--hhHHHHHHHHHhCC
Confidence 23699999999999999887632 1256789999999999999 88999987764 46
Q ss_pred CCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHH--HHHHHHHHHH
Q psy15223 999 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVV--ETYRRIRNTL 1075 (2492)
Q Consensus 999 ~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~--~~~~kl~n~~ 1075 (2492)
..|+++|++|||+++ +|+|||||+||+|+|.+++++||+|++|||+++ +++.+|.+|+++.+.+.. +..+++.|++
T Consensus 281 ~~~p~~v~~hg~l~~-eg~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~ 359 (648)
T PRK12267 281 LPLPKKVFAHGWWLM-KDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLL 359 (648)
T ss_pred CCCCcEEEecceEEE-CCceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHH
Confidence 678899999999995 699999999999999999999999999999996 678999999999986643 3456788887
Q ss_pred HHHhhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccc
Q psy15223 1076 RFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTT 1154 (2492)
Q Consensus 1076 rf~l~~l~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~ 1154 (2492)
.+++..+.. |+.. .+....+...|+|++++++++.+++.++|++|+|++|++.+++|+ .++|+|++..|+|....
T Consensus 360 ~R~~~~~~~~~~~~--~p~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~--~~~N~Yi~~~kpW~~~~ 435 (648)
T PRK12267 360 NRTVAMINKYFDGE--IPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLI--SRANKYIDETAPWVLAK 435 (648)
T ss_pred HHHHHHHHHhcCCc--CCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHhCCChhhhc
Confidence 766554432 2211 111234567899999999999999999999999999999999998 47999999999964432
Q ss_pred c-CChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1155 K-KNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1155 ~-~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
. .+..+.++++.+++++++.++++|+|||||+||+||+.|+.
T Consensus 436 ~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~ 478 (648)
T PRK12267 436 DEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGL 478 (648)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCC
Confidence 2 23344567788899999999999999999999999999985
No 66
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-70 Score=742.72 Aligned_cols=462 Identities=22% Similarity=0.338 Sum_probs=396.0
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHH
Q psy15223 1599 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 1678 (2492)
Q Consensus 1599 ~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~ 1678 (2492)
+++|+|+.|+|||||.+||||+++++++|+++||+||+|++|.|++|+|+||+||+.+|++. +++|.+ ++
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~---g~~~~e-------~~ 72 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKA---GKTPQE-------YV 72 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHc---CCCHHH-------HH
Confidence 35899999999999999999999999999999999999999999999999999999999876 788876 78
Q ss_pred HHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceE
Q psy15223 1679 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 1758 (2492)
Q Consensus 1679 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~ 1758 (2492)
.++.+.++++|++|||++ |.+++|+|+.+.+.++++|.+|+++|+||++..+++|||.|+++|+|.++.
T Consensus 73 d~~~~~fk~~l~~lgI~~--D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~--------- 141 (648)
T PRK12267 73 DEISAGFKELWKKLDISY--DKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLV--------- 141 (648)
T ss_pred HHHHHHHHHHHHHcCCCC--CCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhc---------
Confidence 889999999999999965 578999999999999999999999999999999999999999998774421
Q ss_pred EEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1759 yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
T Consensus 142 -------------------------------------------------------------------------------- 141 (648)
T PRK12267 142 -------------------------------------------------------------------------------- 141 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC
Q psy15223 1839 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 1918 (2492)
Q Consensus 1839 ~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd 1918 (2492)
+
T Consensus 142 ------------------------------~------------------------------------------------- 142 (648)
T PRK12267 142 ------------------------------D------------------------------------------------- 142 (648)
T ss_pred ------------------------------c-------------------------------------------------
Confidence 0
Q ss_pred CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1919 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1919 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
-|+|+|||+|++++.++|||+++++ ++++
T Consensus 143 -------------------------------------------~~~c~~cg~~~e~~~~~~~f~~l~~--------~~~~ 171 (648)
T PRK12267 143 -------------------------------------------GGKCPDCGREVELVKEESYFFRMSK--------YQDR 171 (648)
T ss_pred -------------------------------------------CCcCCCCCCcCeEEecceEEEEcHH--------HHHH
Confidence 0469999999999999999999999 9999
Q ss_pred HHHhhhcc-e-EecccchhHHH-HhhhC-CCCccccccc-CCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccc
Q psy15223 1999 AITAINKI-K-FFPSWGKDRLK-SMILN-RPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW 2073 (2492)
Q Consensus 1999 ~~~~~~~v-~-~~P~~~~~~~~-~~l~~-~~DW~ISRqr-~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w 2073 (2492)
+++++++. . +.|+..++++. +||++ ++|||||||| .||+|||..
T Consensus 172 l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~------------------------------- 220 (648)
T PRK12267 172 LLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFD------------------------------- 220 (648)
T ss_pred HHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCC-------------------------------
Confidence 99999753 3 56898899998 99996 9999999998 599999941
Q ss_pred cccchhhhcCCCccCceecccccccccccCcchhhhccCCc----cccCCcCceeeecccchhhhhHHHHHHHHHHh-cC
Q psy15223 2074 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLIFPADLYLEGSDQHRGWFHSSLLTSIIL-NK 2148 (2492)
Q Consensus 2074 ~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~----~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l-~~ 2148 (2492)
+++|+||||||+++|++.++... +++.+||+|+|++|+||++ ||..+|+++++ .+
T Consensus 221 ------------------~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~--fH~i~wpa~l~~~~ 280 (648)
T PRK12267 221 ------------------PKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILR--FHAIYWPIMLMALG 280 (648)
T ss_pred ------------------CCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecc--hhHHHHHHHHHhCC
Confidence 13699999999999999886532 1245689999999999999 88888887774 46
Q ss_pred CccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHH--HHHHHHHHH
Q psy15223 2149 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE--TYRRIRNTL 2225 (2492)
Q Consensus 2149 ~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~--~~~kl~n~~ 2225 (2492)
..|+++|++|||+++ +|+|||||+||+|+|.+++++||+|++||||++ +++.+|.+|+++.+.+..+ ..++++|++
T Consensus 281 ~~~p~~v~~hg~l~~-eg~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~ 359 (648)
T PRK12267 281 LPLPKKVFAHGWWLM-KDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLL 359 (648)
T ss_pred CCCCcEEEecceEEE-CCceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHH
Confidence 678899999999995 699999999999999999999999999999995 6889999999999866433 457788887
Q ss_pred HHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhcccc
Q psy15223 2226 RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTK 2305 (2492)
Q Consensus 2226 r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~ 2305 (2492)
.+++..+..+..+ ..+....+...|+|++++++++.+++.++|++|+|++|++.+++|+ .++|+|++..|++.....
T Consensus 360 ~R~~~~~~~~~~~-~~p~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~--~~~N~Yi~~~kpW~~~~~ 436 (648)
T PRK12267 360 NRTVAMINKYFDG-EIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLI--SRANKYIDETAPWVLAKD 436 (648)
T ss_pred HHHHHHHHHhcCC-cCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHhCCChhhhcC
Confidence 6655443321111 1111234567899999999999999999999999999999999998 479999999998543322
Q ss_pred -CChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2306 -KNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2306 -~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
.+..+..+++.+++++++.++++|+|||||+||+||+.|+.
T Consensus 437 ~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~ 478 (648)
T PRK12267 437 EGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGL 478 (648)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCC
Confidence 23344566788899999999999999999999999999985
No 67
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=3.6e-70 Score=734.51 Aligned_cols=498 Identities=17% Similarity=0.224 Sum_probs=401.7
Q ss_pred ccCCCCcEEEEcCCCCCCCcccchHhhh-hHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHH
Q psy15223 445 ASINRPKFILHDGPPYANGDIHIGHAVN-KILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNK 523 (2492)
Q Consensus 445 ~~~~~~~f~l~dgPPyanG~lHiGHa~n-~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~ 523 (2492)
+..+.++|+|+.|||||||.|||||+++ ++.+||++||+||+|++|+|++|+|+||+|||.+|++. +.+|.+
T Consensus 12 ~~~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~---g~~p~e---- 84 (801)
T PLN02610 12 PIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEE---NCTPKE---- 84 (801)
T ss_pred CCCCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHc---CCCHHH----
Confidence 3456778999999999999999999997 67799999999999999999999999999999999886 788877
Q ss_pred HHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccce
Q psy15223 524 ARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKK 603 (2492)
Q Consensus 524 ~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~ 603 (2492)
+++++.+.++++|++||| +||++++|+||.|.+.++++|.+|+++|+||++..+++|||+|+|+|+|..|+-.
T Consensus 85 ---~~d~~~~~~~~~~~~l~i--~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~-- 157 (801)
T PLN02610 85 ---ICDKYHAIHKEVYDWFDI--SFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGT-- 157 (801)
T ss_pred ---HHHHHHHHHHHHHHHcCC--ccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCc--
Confidence 888899999999999998 5679999999999999999999999999999999999999999999999876400
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
. |...
T Consensus 158 -C--------------------------------------------------P~~~------------------------ 162 (801)
T PLN02610 158 -C--------------------------------------------------PTEG------------------------ 162 (801)
T ss_pred -C--------------------------------------------------Cccc------------------------
Confidence 0 0000
Q ss_pred HHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCc
Q psy15223 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 763 (2492)
Q Consensus 684 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~ 763 (2492)
.+ ..++.|. .|...|.
T Consensus 163 ---C~----------------------------------------------------~~~a~Gd----~Ce~Cg~----- 178 (801)
T PLN02610 163 ---CN----------------------------------------------------YDSARGD----QCEKCGK----- 178 (801)
T ss_pred ---cC----------------------------------------------------ccccccc----hhhhccc-----
Confidence 00 0000000 0111111
Q ss_pred ccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhH
Q psy15223 764 INPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKK 843 (2492)
Q Consensus 764 ~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~ 843 (2492)
. ....++..|+|++||+|++++.++|||+++++
T Consensus 179 --------------------------------------~--~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~------- 211 (801)
T PLN02610 179 --------------------------------------L--LNPTELIDPKCKVCKNTPRIRDTDHLFLELPL------- 211 (801)
T ss_pred --------------------------------------c--CChhhhcCCcccCCCCcceEEEcceEEEEhHH-------
Confidence 0 01123445899999999999999999999998
Q ss_pred HHHHHHHHHhhcceEecchhhHH---HHHHHh-cCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcC
Q psy15223 844 SLRESAITAINKIKFFPSWGKDR---LKSMIL-NRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 919 (2492)
Q Consensus 844 ~~~~~~~~~i~~v~~~P~~~~~r---l~~~l~-~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g 919 (2492)
+++.+++.+++-...|.|..+. +.+||+ +++||||||+..||+|+|.- |
T Consensus 212 -~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~-----~--------------------- 264 (801)
T PLN02610 212 -LKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLE-----K--------------------- 264 (801)
T ss_pred -HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCC-----C---------------------
Confidence 9999999998654567766654 448997 69999999999999999940 0
Q ss_pred CccccccCchhhcCCCccCceecCCccccccccccccchhc-ccCccccCCcCe--e---eeecccccchhhHHHHHHHH
Q psy15223 920 IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVI-RGSHKKQLIFPA--D---LYLEGSDQHRGWFHSSLLTS 993 (2492)
Q Consensus 920 ~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~-~~~~~~~~~~p~--D---l~~~G~D~~rgwf~s~l~~~ 993 (2492)
-+..|++||||+-+.|++.+ +...+++.|||. | +|+.|+|+++ ||+.+|++
T Consensus 265 ---------------------~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~--fH~i~wPa 321 (801)
T PLN02610 265 ---------------------YKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVP--FHTVMFPS 321 (801)
T ss_pred ---------------------CCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecch--hHHHHHHH
Confidence 13468999999999998876 333334567765 7 8999999998 99999999
Q ss_pred HHhcCCCC---ceEEEEeeEEEcCCCccccccCCCccCcchhhhh-cChhhHHHHhhc-cCcccccccCHHHHHHHHH--
Q psy15223 994 IILNKSAP---YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVAS-TDYSKDLSISNEILNRVVE-- 1066 (2492)
Q Consensus 994 ~~~~~~~p---~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~-yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~-- 1066 (2492)
+++....| ++++++|||+. .+|+|||||+||+|+|.++++. ||+|++||||++ .++.+|.+||++.+.+..+
T Consensus 322 ~L~a~g~~~~~p~~i~~~g~l~-~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~Nsd 400 (801)
T PLN02610 322 TLLGTGENWTMMKTISVTEYLN-YEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSE 400 (801)
T ss_pred HHHhCCCCcCCCCEEEeccCEe-cCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHH
Confidence 99976654 47999999987 8999999999999999999996 999999999996 6788999999999877654
Q ss_pred HHHHHHHHHHHHhhcCCC-----CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhh
Q psy15223 1067 TYRRIRNTLRFLLANTSD-----FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGS 1141 (2492)
Q Consensus 1067 ~~~kl~n~~rf~l~~l~~-----~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~ 1141 (2492)
..+.+.|.+..+++.+.. |+.........+...+|+|++++++++++++.++|++|+|+.|++.+++|+ +++|
T Consensus 401 L~n~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~--~~~N 478 (801)
T PLN02610 401 LLNNLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSIS--SEGN 478 (801)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHH
Confidence 477788866655544331 222110001112456799999999999999999999999999999999986 6899
Q ss_pred hHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1142 FYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1142 ~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
+||+..++|-... .+..+..++..++.++++.++.+|+||||++||+||+.|+-
T Consensus 479 kYIe~~kPW~L~k-~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~ 532 (801)
T PLN02610 479 AYLQESQFWKLYK-EDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNL 532 (801)
T ss_pred HHHHhcCchhhhC-CCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 9999998864322 23344566788888899999999999999999999999984
No 68
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=7.9e-70 Score=731.26 Aligned_cols=496 Identities=16% Similarity=0.221 Sum_probs=398.8
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhh-hHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHH
Q psy15223 1597 INRPKFILHDGPPYANGDIHIGHAVN-KILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR 1675 (2492)
Q Consensus 1597 ~~~~~f~i~~~pPy~nG~lHlGH~~~-~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~ 1675 (2492)
.++++|+|+.|||||||.|||||+++ ++.+||++||+||+|++|+|++|+|+||+|||.+|++. +.+|.+
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~---g~~p~e------ 84 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEE---NCTPKE------ 84 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHc---CCCHHH------
Confidence 46678999999999999999999997 67799999999999999999999999999999999887 788877
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeec
Q psy15223 1676 ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYD 1755 (2492)
Q Consensus 1676 ~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~ 1755 (2492)
++.++.+.++++|++|||+ ||++++|++|.|.+.++++|.+|+++|+||++..+++|||+|+|+|+|..|+-.
T Consensus 85 -~~d~~~~~~~~~~~~l~i~--~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~---- 157 (801)
T PLN02610 85 -ICDKYHAIHKEVYDWFDIS--FDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGT---- 157 (801)
T ss_pred -HHHHHHHHHHHHHHHcCCc--cccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCc----
Confidence 7888889999999999985 569999999999999999999999999999999999999999999999776400
Q ss_pred ceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHH
Q psy15223 1756 FSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLK 1835 (2492)
Q Consensus 1756 ~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~ 1835 (2492)
+ |...
T Consensus 158 ------------------C-------------------------------P~~~-------------------------- 162 (801)
T PLN02610 158 ------------------C-------------------------------PTEG-------------------------- 162 (801)
T ss_pred ------------------C-------------------------------Cccc--------------------------
Confidence 0 0000
Q ss_pred HcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCccc
Q psy15223 1836 KFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIIN 1915 (2492)
Q Consensus 1836 ~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~ 1915 (2492)
.|.+
T Consensus 163 -----------------------------------------------------------C~~~----------------- 166 (801)
T PLN02610 163 -----------------------------------------------------------CNYD----------------- 166 (801)
T ss_pred -----------------------------------------------------------cCcc-----------------
Confidence 0000
Q ss_pred ccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHH
Q psy15223 1916 PVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSL 1995 (2492)
Q Consensus 1916 ~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~ 1995 (2492)
+.+|-.++.|+. .....++..|+|++||+|++++.++|||+++++ +
T Consensus 167 --~a~Gd~Ce~Cg~------------------------~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~--------~ 212 (801)
T PLN02610 167 --SARGDQCEKCGK------------------------LLNPTELIDPKCKVCKNTPRIRDTDHLFLELPL--------L 212 (801)
T ss_pred --ccccchhhhccc------------------------cCChhhhcCCcccCCCCcceEEEcceEEEEhHH--------H
Confidence 001111111110 011233445899999999999999999999999 9
Q ss_pred HHHHHHhhhcceEecccchhH---HHHhhh-CCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcc
Q psy15223 1996 RESAITAINKIKFFPSWGKDR---LKSMIL-NRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 2071 (2492)
Q Consensus 1996 k~~~~~~~~~v~~~P~~~~~~---~~~~l~-~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 2071 (2492)
++.+++++++-.+.|.+..+. +.+||+ +++||||||+..||+|+|.. |
T Consensus 213 ~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~--------------------------~-- 264 (801)
T PLN02610 213 KDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLE--------------------------K-- 264 (801)
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCC--------------------------C--
Confidence 999999998655567666554 448997 69999999999999999941 0
Q ss_pred cccccchhhhcCCCccCceecccccccccccCcchhhhc-cCCccccCCcCc--e---eeecccchhhhhHHHHHHHHHH
Q psy15223 2072 IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVI-RGSHKKQLIFPA--D---LYLEGSDQHRGWFHSSLLTSII 2145 (2492)
Q Consensus 2072 ~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~-~~~~~~~~~~P~--D---l~~~G~D~~r~wf~~~l~~~~~ 2145 (2492)
-+..|++||||+-+.|++.+ ....+++.|||. | +|+.|+|+++ ||.++|++++
T Consensus 265 -------------------~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~--fH~i~wPa~L 323 (801)
T PLN02610 265 -------------------YKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVP--FHTVMFPSTL 323 (801)
T ss_pred -------------------CCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecch--hHHHHHHHHH
Confidence 02469999999999999886 332223445654 6 7999999998 9999999999
Q ss_pred hcCCcc---ccEEEEeeeEEcCCCceeeeccCCccCcchhhhc-cChhHHHHHHhc-cCCCCcccccHHHHHHHHH--HH
Q psy15223 2146 LNKSAP---YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVAS-TDYSKDLSISNEILNRVVE--TY 2218 (2492)
Q Consensus 2146 l~~~~p---fk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~--~~ 2218 (2492)
+....| ++++++|||++ .+|+|||||+||+|+|.++++. ||+|++||||++ .++++|.+||++.+.+..+ ..
T Consensus 324 ~a~g~~~~~p~~i~~~g~l~-~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~ 402 (801)
T PLN02610 324 LGTGENWTMMKTISVTEYLN-YEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELL 402 (801)
T ss_pred HhCCCCcCCCCEEEeccCEe-cCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHH
Confidence 976654 47999999987 8999999999999999999996 999999999996 6889999999999877655 46
Q ss_pred HHHHHHHHHHHhcCC-----CCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhH
Q psy15223 2219 RRIRNTLRFLLANTS-----DFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY 2293 (2492)
Q Consensus 2219 ~kl~n~~r~~~~~~~-----~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Y 2293 (2492)
+.|.|.+..++..+. .|+.........+...+|+|++++++++++++.++|++|+|++|++.+++|. +++|+|
T Consensus 403 n~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~--~~~NkY 480 (801)
T PLN02610 403 NNLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSIS--SEGNAY 480 (801)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHH
Confidence 778886655544333 1221100001112456799999999999999999999999999999999986 789999
Q ss_pred HHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2294 LDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2294 le~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
|+..++|-... .+..+..+++.++.++++.++.||+||||++||+||+.|+-
T Consensus 481 Ie~~kPW~L~k-~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~ 532 (801)
T PLN02610 481 LQESQFWKLYK-EDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNL 532 (801)
T ss_pred HHhcCchhhhC-CCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 99888754322 23344556778888899999999999999999999999984
No 69
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=2.2e-69 Score=706.97 Aligned_cols=464 Identities=22% Similarity=0.330 Sum_probs=387.9
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHH
Q psy15223 447 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARA 526 (2492)
Q Consensus 447 ~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~ 526 (2492)
..+++|+|++|||||||.||||||++++++|+++||+||+|++|.|++|||+||+||+.+|++. +.+|.+
T Consensus 66 ~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~---g~~p~e------- 135 (616)
T PLN02224 66 DEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAAN---GRNPPE------- 135 (616)
T ss_pred CCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHc---CCChHH-------
Confidence 3467899999999999999999999999999999999999999999999999999999999876 677766
Q ss_pred HHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceecc
Q psy15223 527 LAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 606 (2492)
Q Consensus 527 ~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~ 606 (2492)
+|+++.+.++++|++||| +||++++|++|.|.+.++++|.+|+++|+||++.++++|||+|++.+.+.|+.
T Consensus 136 ~~~~~~~~~~~~~~~l~I--~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~------- 206 (616)
T PLN02224 136 HCDIISQSYRTLWKDLDI--AYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELL------- 206 (616)
T ss_pred HHHHHHHHHHHHHHHcCC--CCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHc-------
Confidence 677778889999999999 77899999999999999999999999999999999999999999876443321
Q ss_pred EEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHH
Q psy15223 607 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKK 686 (2492)
Q Consensus 607 s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~ 686 (2492)
T Consensus 207 -------------------------------------------------------------------------------- 206 (616)
T PLN02224 207 -------------------------------------------------------------------------------- 206 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccc
Q psy15223 687 FGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP 766 (2492)
Q Consensus 687 ~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~ 766 (2492)
.
T Consensus 207 ------------------------------------------------------------------------------~- 207 (616)
T PLN02224 207 ------------------------------------------------------------------------------E- 207 (616)
T ss_pred ------------------------------------------------------------------------------C-
Confidence 0
Q ss_pred cCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHH
Q psy15223 767 VMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLR 846 (2492)
Q Consensus 767 vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~ 846 (2492)
-+.|..||.|++++.+++||+++++ ++
T Consensus 208 ---------------------------------------------~~~~~~~~~~~~~~~e~~~ff~Ls~--------~~ 234 (616)
T PLN02224 208 ---------------------------------------------NNCCPVHQMPCVARKEDNYFFALSK--------YQ 234 (616)
T ss_pred ---------------------------------------------CCCCCCCCCcceEEecceEEEEhHH--------HH
Confidence 0135568999999999999999998 89
Q ss_pred HHHHHHhhc-ce-EecchhhHHHHHHHh-cCCCeeeeccc-cCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcc
Q psy15223 847 ESAITAINK-IK-FFPSWGKDRLKSMIL-NRPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 922 (2492)
Q Consensus 847 ~~~~~~i~~-v~-~~P~~~~~rl~~~l~-~~~DWcISRqr-~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 922 (2492)
+.+.+.+++ -. +.|+..++.+.+||+ +++||||||.+ .||+|+|.
T Consensus 235 ~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~------------------------------- 283 (616)
T PLN02224 235 KPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPD------------------------------- 283 (616)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCC-------------------------------
Confidence 999999964 33 458888899999999 59999999987 79999993
Q ss_pred ccccCchhhcCCCccCceecCCccccccccccccchhcccCcc-------ccCCcCeeeeecccccchhhHHHHHHHHHH
Q psy15223 923 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK-------KQLIFPADLYLEGSDQHRGWFHSSLLTSII 995 (2492)
Q Consensus 923 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~-------~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~ 995 (2492)
.++.|++||||+.+.|++.++.... +..+||.|+|+.|+|+++ ||+.+|++++
T Consensus 284 ------------------~~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~--fH~i~wpa~l 343 (616)
T PLN02224 284 ------------------DDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILR--FHAVYWPAML 343 (616)
T ss_pred ------------------CCCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEeecccc--cHHHHHHHHH
Confidence 0246899999999999987754321 134789999999999998 8999999987
Q ss_pred hc-CCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHH--HHHHHH
Q psy15223 996 LN-KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVV--ETYRRI 1071 (2492)
Q Consensus 996 ~~-~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~--~~~~kl 1071 (2492)
+. +..+.+++++|||+ +.+|+|||||+||+|+|.+++++||+|++||||++ +++.+|.+|+++.+.+.. +....+
T Consensus 344 ~~~g~~~P~~i~~~g~l-~~eG~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~l 422 (616)
T PLN02224 344 MSAGLELPKMVFGHGFL-TKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTI 422 (616)
T ss_pred HHCCCCCCcEEEecccE-ecCCccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 75 33445999999995 59999999999999999999999999999999997 567899999999875443 356677
Q ss_pred HHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhh
Q psy15223 1072 RNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRL 1151 (2492)
Q Consensus 1072 ~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl 1151 (2492)
.|.+.+++.....+... ..+........|++++++++++++++.++|++|+|++|++.+++|+ ..+|+|++..++|-
T Consensus 423 gNll~R~l~~~~k~~~~-~~~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~--~~~N~Yi~~~~PW~ 499 (616)
T PLN02224 423 GNLLNRTLGLLKKNCES-TLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIG--NAGNTYMDQRAPWF 499 (616)
T ss_pred HHHHHHHHHHHHHhcCC-cCCCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhCCchh
Confidence 78776655433221111 0011112245689999999999999999999999999999999998 67999999988874
Q ss_pred ccccC--ChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1152 YTTKK--NSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1152 ~~~~~--~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
..... +..+..++..+++++++.++.+|+|||||+||+||+.|+.
T Consensus 500 l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~ 546 (616)
T PLN02224 500 LFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGY 546 (616)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCC
Confidence 32221 2233456778899999999999999999999999999974
No 70
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.4e-69 Score=730.39 Aligned_cols=482 Identities=20% Similarity=0.273 Sum_probs=395.0
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAY 529 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~ 529 (2492)
++|+|+.|||||||.+||||+++++++|+++||+||+|++|.|++|||+||+||+.+|++. +.+|.+ +++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~---g~~p~e-------~~~ 71 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE---GITPEE-------LIA 71 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHc---CCCHHH-------HHH
Confidence 4699999999999999999999999999999999999999999999999999999999986 788877 789
Q ss_pred HHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEE
Q psy15223 530 EKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIY 609 (2492)
Q Consensus 530 ~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~y 609 (2492)
++.+.++++|++|||+. +.+++|+++.|.+.++++|.+|+++|+||++..+|+||+.|+++|+|.+|+-
T Consensus 72 ~~~~~~~~~~~~l~i~~--d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g--------- 140 (673)
T PRK00133 72 RYHAEHKRDFAGFGISF--DNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKG--------- 140 (673)
T ss_pred HHHHHHHHHHHHhCCCC--CCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheec---------
Confidence 99999999999999965 5689999999999999999999999999999999999999999999976540
Q ss_pred EEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCC
Q psy15223 610 VGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF 689 (2492)
Q Consensus 610 v~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~ 689 (2492)
|.| .+.+ +
T Consensus 141 -------------------------------~cp----~C~~----~--------------------------------- 148 (673)
T PRK00133 141 -------------------------------TCP----KCGA----E--------------------------------- 148 (673)
T ss_pred -------------------------------ccC----CCCC----c---------------------------------
Confidence 001 0000 0
Q ss_pred cCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCC
Q psy15223 690 KGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD 769 (2492)
Q Consensus 690 ~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~ 769 (2492)
|.
T Consensus 149 ------------------------------------------------------------------------------d~ 150 (673)
T PRK00133 149 ------------------------------------------------------------------------------DQ 150 (673)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred CCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHH
Q psy15223 770 DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA 849 (2492)
Q Consensus 770 ~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~ 849 (2492)
+|...+.++ ..+.-.++ ..|+|++||+|++++.++|||+++++ +++++
T Consensus 151 ~g~~ce~cg----------------------~~~~~~~l--~~~~~~~~g~~~e~~~~~~~f~~l~~--------~~~~l 198 (673)
T PRK00133 151 YGDNCEVCG----------------------ATYSPTEL--INPKSAISGATPVLKESEHFFFKLPR--------FEEFL 198 (673)
T ss_pred CCchhhhcc----------------------ccCChHhh--cCCccccCCCcceEEecceEEEEHHH--------HHHHH
Confidence 011111111 00000001 12789999999999999999999998 99999
Q ss_pred HHHhhc-ceEecchhhHHHHHHHh-cCCCeeeeccccC-CceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcccccc
Q psy15223 850 ITAINK-IKFFPSWGKDRLKSMIL-NRPDWTISRQRHW-GVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNL 926 (2492)
Q Consensus 850 ~~~i~~-v~~~P~~~~~rl~~~l~-~~~DWcISRqr~W-GvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~ 926 (2492)
++.+++ ..| |+..++.+.+||+ +++|||||||+.| |+|+|-
T Consensus 199 ~~~~~~~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~----------------------------------- 242 (673)
T PRK00133 199 KEWITRSGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPG----------------------------------- 242 (673)
T ss_pred HHHHhcCCCC-CHHHHHHHHHHHhCCCcccceeeeCCccceECCC-----------------------------------
Confidence 999865 555 8899999999997 6999999999999 999991
Q ss_pred CchhhcCCCccCceecCCccccccccccccchhcc-cCc-----cccCCcCee-----eeecccccchhhHHHHHHHHHH
Q psy15223 927 DIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIR-GSH-----KKQLIFPAD-----LYLEGSDQHRGWFHSSLLTSII 995 (2492)
Q Consensus 927 ~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~-~~~-----~~~~~~p~D-----l~~~G~D~~rgwf~s~l~~~~~ 995 (2492)
.+..+++||||+.+.|++.+. ... .++.|||.+ +|+.|+|+++ ||..+|++++
T Consensus 243 --------------~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~--fH~i~wpa~l 306 (673)
T PRK00133 243 --------------APGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIY--FHTLFWPAML 306 (673)
T ss_pred --------------CCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchh--HHHHHHHHHH
Confidence 023589999999999887663 211 124677433 9999999998 8899998877
Q ss_pred hc-CCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcc-cccccCHHHHHHH--HHHHHH
Q psy15223 996 LN-KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYS-KDLSISNEILNRV--VETYRR 1070 (2492)
Q Consensus 996 ~~-~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~-~d~~fs~~~l~~~--~~~~~k 1070 (2492)
+. +..++++|++|||+++ +|+|||||+||+|+|.|++++||+|++|||+++ ++.. +|.+|+++.+... .+..++
T Consensus 307 ~a~g~~lP~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~ 385 (673)
T PRK00133 307 EGAGYRLPTNVFAHGFLTV-EGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGK 385 (673)
T ss_pred HhCCCCCCCEEeeeccEEe-cCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 64 4445599999999997 999999999999999999999999999999996 4567 8999999987543 345778
Q ss_pred HHHHHHHHhhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhh
Q psy15223 1071 IRNTLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKD 1149 (2492)
Q Consensus 1071 l~n~~rf~l~~l~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kd 1149 (2492)
++|.+.++...+.. |+.. ++ ..+.|+|++++++++.+.+.++|++|+|++|++.+++|+ +++|+|++..|+
T Consensus 386 l~Nl~~R~~~~~~k~~~~~---~~---~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~N~yi~~~kp 457 (673)
T PRK00133 386 VVNFASRTAGFINKRFDGK---LP---DALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALA--DFANKYVDDNEP 457 (673)
T ss_pred HHHHHHHHHHHHHHhcCCC---CC---CCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCC
Confidence 88887766543322 2211 11 245699999999999999999999999999999999998 589999999999
Q ss_pred hhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1150 RLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1150 rl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
|.... .+..+++++..++.++++.++++|+|||||+||+||+.|+.
T Consensus 458 w~~~~-~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 458 WKLAK-QDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNL 503 (673)
T ss_pred hhhhc-CCHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCC
Confidence 65433 24455667888888999999999999999999999999985
No 71
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.1e-69 Score=719.88 Aligned_cols=458 Identities=21% Similarity=0.340 Sum_probs=392.3
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAY 529 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~ 529 (2492)
++|+|++|||||||.+||||+++++++|+++||+||+|++|.|++|+|+||+||+.+|++. +.++.+ +|+
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~---g~~~~~-------~~~ 70 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEA---GISPQE-------LAD 70 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHc---CCCHHH-------HHH
Confidence 4799999999999999999999999999999999999999999999999999999999876 778866 888
Q ss_pred HHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEE
Q psy15223 530 EKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIY 609 (2492)
Q Consensus 530 ~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~y 609 (2492)
++.+.++++|++|||. ++..+.|+++.|...++++|.+|+++|++|++..+|+||++|+|+|+++|+.
T Consensus 71 ~~~~~~~~~l~~l~I~--~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~---------- 138 (511)
T PRK11893 71 RNSAAFKRLWEALNIS--YDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI---------- 138 (511)
T ss_pred HHHHHHHHHHHHhCCC--cCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc----------
Confidence 8999999999999995 5678899999999999999999999999999999999999999999875532
Q ss_pred EEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCC
Q psy15223 610 VGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF 689 (2492)
Q Consensus 610 v~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~ 689 (2492)
T Consensus 139 -------------------------------------------------------------------------------- 138 (511)
T PRK11893 139 -------------------------------------------------------------------------------- 138 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCC
Q psy15223 690 KGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD 769 (2492)
Q Consensus 690 ~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~ 769 (2492)
++
T Consensus 139 ---------------------------------------------------------------------------~~--- 140 (511)
T PRK11893 139 ---------------------------------------------------------------------------ED--- 140 (511)
T ss_pred ---------------------------------------------------------------------------CC---
Confidence 00
Q ss_pred CCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHH
Q psy15223 770 DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA 849 (2492)
Q Consensus 770 ~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~ 849 (2492)
.|||||||+|++++.++|||++++. +++++
T Consensus 141 ------------------------------------------~p~~~~~~~~~~~~~~~~~f~~l~~--------~~~~l 170 (511)
T PRK11893 141 ------------------------------------------GYRCPPTGAPVEWVEEESYFFRLSK--------YQDKL 170 (511)
T ss_pred ------------------------------------------CCCCCCCCCcceEEecCeEEEEcHH--------HHHHH
Confidence 0689999999999999999999998 99999
Q ss_pred HHHhhc-ceE-ecchhhHHHHHHHh-cCCCeeeec-cccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccc
Q psy15223 850 ITAINK-IKF-FPSWGKDRLKSMIL-NRPDWTISR-QRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQN 925 (2492)
Q Consensus 850 ~~~i~~-v~~-~P~~~~~rl~~~l~-~~~DWcISR-qr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~ 925 (2492)
.+.+++ +.+ .|+..++++.+|++ +++|||||| |+.||+|||..
T Consensus 171 ~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~--------------------------------- 217 (511)
T PRK11893 171 LELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGD--------------------------------- 217 (511)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCC---------------------------------
Confidence 999976 554 69999999999999 599999999 99999999941
Q ss_pred cCchhhcCCCccCceecCCccccccccccccchhcccCc-------cccCCcCeeeeecccccchhhHHHHHHHHHHhcC
Q psy15223 926 LDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-------KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNK 998 (2492)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~-------~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~ 998 (2492)
+.+++||||||+++|.+..+... ++..+||+|++++|+||+++|+......+.++..
T Consensus 218 ----------------~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~ 281 (511)
T PRK11893 218 ----------------PKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGL 281 (511)
T ss_pred ----------------CCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCcceEecccccccchhHHHHHHHhCCC
Confidence 13589999999999988865421 2357889999999999999776666666666645
Q ss_pred CCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc-CcccccccCHHHHHHHHH--HHHHHHHHH
Q psy15223 999 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVE--TYRRIRNTL 1075 (2492)
Q Consensus 999 ~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~~~--~~~kl~n~~ 1075 (2492)
..| +.+++|||+++ +|+|||||+||+|+|.|++++||+|++|||+++. ++.+|++|+++.+....+ ....+.|++
T Consensus 282 ~~p-~~~~~~g~v~~-~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~ 359 (511)
T PRK11893 282 PLP-KRVFAHGFLTL-DGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLA 359 (511)
T ss_pred CCC-CEEEeeccEEE-CCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 666 99999999995 8999999999999999999999999999999975 779999999999966543 334566655
Q ss_pred HHHhh----cCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhh
Q psy15223 1076 RFLLA----NTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRL 1151 (2492)
Q Consensus 1076 rf~l~----~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl 1151 (2492)
..+.. ...++.+. ...+...|+|++++++++.+.+.++|++|+|+.|++.+++|+ ..++.|++..|++.
T Consensus 360 ~r~~~~~~~~~~~~~~~-----~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~~pw~ 432 (511)
T PRK11893 360 QRTLSMIAKNFDGKVPE-----PGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALV--RAANKYIDEQAPWS 432 (511)
T ss_pred HHHHHHHHHhcCCCCCC-----CcccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHhhCCChh
Confidence 43322 22222221 123467899999999999999999999999999999999999 45899999999865
Q ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1152 YTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1152 ~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
... .+..+++++..+++++++.++++|+|||||+||+||+.|+.
T Consensus 433 ~~~-~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 476 (511)
T PRK11893 433 LAK-TDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGV 476 (511)
T ss_pred hhc-CCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCC
Confidence 432 24456678899999999999999999999999999999974
No 72
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=1.3e-68 Score=699.74 Aligned_cols=463 Identities=22% Similarity=0.330 Sum_probs=385.4
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHH
Q psy15223 1598 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARAL 1677 (2492)
Q Consensus 1598 ~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~ 1677 (2492)
.+++|+|++|||||||.|||||+++++++|+++||+||+||+|.|++|||+||+||+.+|++. +.+|.+ +
T Consensus 67 ~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~---g~~p~e-------~ 136 (616)
T PLN02224 67 EADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAAN---GRNPPE-------H 136 (616)
T ss_pred CCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHc---CCChHH-------H
Confidence 467899999999999999999999999999999999999999999999999999999999876 777765 6
Q ss_pred HHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecce
Q psy15223 1678 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS 1757 (2492)
Q Consensus 1678 ~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~ 1757 (2492)
+.++.+.+++++++||+ +||++++|++|.|.+.++++|.+|+++|+||++.++++|||+|++.+.+.|+.
T Consensus 137 ~~~~~~~~~~~~~~l~I--~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~-------- 206 (616)
T PLN02224 137 CDIISQSYRTLWKDLDI--AYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELL-------- 206 (616)
T ss_pred HHHHHHHHHHHHHHcCC--CCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHc--------
Confidence 77777888999999999 77899999999999999999999999999999999999999999876443221
Q ss_pred EEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHc
Q psy15223 1758 IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF 1837 (2492)
Q Consensus 1758 ~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~ 1837 (2492)
T Consensus 207 -------------------------------------------------------------------------------- 206 (616)
T PLN02224 207 -------------------------------------------------------------------------------- 206 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCccccc
Q psy15223 1838 GFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 1917 (2492)
Q Consensus 1838 ~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~v 1917 (2492)
T Consensus 207 -------------------------------------------------------------------------------- 206 (616)
T PLN02224 207 -------------------------------------------------------------------------------- 206 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHH
Q psy15223 1918 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 1997 (2492)
Q Consensus 1918 d~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~ 1997 (2492)
+ -+.|..||.|++++.+++||+++++ +++
T Consensus 207 ------------------------------~-------------~~~~~~~~~~~~~~~e~~~ff~Ls~--------~~~ 235 (616)
T PLN02224 207 ------------------------------E-------------NNCCPVHQMPCVARKEDNYFFALSK--------YQK 235 (616)
T ss_pred ------------------------------C-------------CCCCCCCCCcceEEecceEEEEhHH--------HHH
Confidence 0 0125568999999999999999999 899
Q ss_pred HHHHhhhc-ce-EecccchhHHHHhhh-CCCCccccccc-CCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccc
Q psy15223 1998 SAITAINK-IK-FFPSWGKDRLKSMIL-NRPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW 2073 (2492)
Q Consensus 1998 ~~~~~~~~-v~-~~P~~~~~~~~~~l~-~~~DW~ISRqr-~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w 2073 (2492)
.+.+.+++ -. +.|+..++.+.+||+ +++||||||.+ .||+|+|..
T Consensus 236 ~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~------------------------------- 284 (616)
T PLN02224 236 PLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDD------------------------------- 284 (616)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCC-------------------------------
Confidence 99999863 33 468888899999999 59999999987 799999920
Q ss_pred cccchhhhcCCCccCceecccccccccccCcchhhhccCCcc-------ccCCcCceeeecccchhhhhHHHHHHHHHHh
Q psy15223 2074 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK-------KQLIFPADLYLEGSDQHRGWFHSSLLTSIIL 2146 (2492)
Q Consensus 2074 ~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~-------~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l 2146 (2492)
+..|++||||+.+.|++.+..... +.++||.|+++.|+|+++ ||..+|+++++
T Consensus 285 ------------------~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~--fH~i~wpa~l~ 344 (616)
T PLN02224 285 ------------------DKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILR--FHAVYWPAMLM 344 (616)
T ss_pred ------------------CCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEeecccc--cHHHHHHHHHH
Confidence 236899999999999987754221 134789999999999998 89999999887
Q ss_pred c-CCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHH--HHHHHH
Q psy15223 2147 N-KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE--TYRRIR 2222 (2492)
Q Consensus 2147 ~-~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~--~~~kl~ 2222 (2492)
. +-.+++++++||++ +.+|+|||||+||+|+|.+++++||+|++||||++ +++.+|.+|+++.+.+..+ ..+.+.
T Consensus 345 ~~g~~~P~~i~~~g~l-~~eG~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lg 423 (616)
T PLN02224 345 SAGLELPKMVFGHGFL-TKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIG 423 (616)
T ss_pred HCCCCCCcEEEecccE-ecCCccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5 33455899999995 58999999999999999999999999999999997 5788999999998755433 566777
Q ss_pred HHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhc
Q psy15223 2223 NTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLY 2302 (2492)
Q Consensus 2223 n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~ 2302 (2492)
|.+.+++.....+..+ ..+........|++++++++++++++.++|++|+|++|++.+++|+ ..+|+|++..++|..
T Consensus 424 Nll~R~l~~~~k~~~~-~~~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~--~~~N~Yi~~~~PW~l 500 (616)
T PLN02224 424 NLLNRTLGLLKKNCES-TLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIG--NAGNTYMDQRAPWFL 500 (616)
T ss_pred HHHHHHHHHHHHhcCC-cCCCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhCCchhh
Confidence 7776554432221111 0011111234589999999999999999999999999999999998 679999999888743
Q ss_pred cccC--ChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2303 TTKK--NSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2303 ~~~~--~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
.... +..+..++..+++++++.++.||+|||||+||+||+.|+.
T Consensus 501 ~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~ 546 (616)
T PLN02224 501 FKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGY 546 (616)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCC
Confidence 2221 2223456777899999999999999999999999999975
No 73
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.8e-69 Score=724.95 Aligned_cols=481 Identities=20% Similarity=0.283 Sum_probs=393.8
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q psy15223 1600 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAY 1679 (2492)
Q Consensus 1600 ~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~ 1679 (2492)
++|+|+.|||||||.|||||+++++++|+++||+||+|++|+|++|||+||+||+.+|++. +++|.+ +++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~---g~~p~e-------~~~ 71 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE---GITPEE-------LIA 71 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHc---CCCHHH-------HHH
Confidence 4699999999999999999999999999999999999999999999999999999999986 888877 788
Q ss_pred HHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceEE
Q psy15223 1680 EKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIY 1759 (2492)
Q Consensus 1680 ~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~y 1759 (2492)
++.+.++++|++||+++| .+++|++|.|.+.++++|.+|+++|+||++..+|+|||.|+|+|+|.+|+-
T Consensus 72 ~~~~~~~~~~~~l~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g--------- 140 (673)
T PRK00133 72 RYHAEHKRDFAGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKG--------- 140 (673)
T ss_pred HHHHHHHHHHHHhCCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheec---------
Confidence 999999999999999754 688999999999999999999999999999999999999999999976530
Q ss_pred EEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCC
Q psy15223 1760 VGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF 1839 (2492)
Q Consensus 1760 v~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~ 1839 (2492)
|.|
T Consensus 141 -------------------------------~cp---------------------------------------------- 143 (673)
T PRK00133 141 -------------------------------TCP---------------------------------------------- 143 (673)
T ss_pred -------------------------------ccC----------------------------------------------
Confidence 001
Q ss_pred cCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCC
Q psy15223 1840 KGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD 1919 (2492)
Q Consensus 1840 ~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~ 1919 (2492)
.++.. |.
T Consensus 144 ------------------------------------------------------~C~~~-------------------d~ 150 (673)
T PRK00133 144 ------------------------------------------------------KCGAE-------------------DQ 150 (673)
T ss_pred ------------------------------------------------------CCCCc-------------------cc
Confidence 00000 01
Q ss_pred CCccccCCCC-CCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1920 DGNFISTLPL-FGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1920 ~G~~~~~~~~-~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
+|..++.||. +... .| ..|+|++||+|++++.++|||+++++ +++.
T Consensus 151 ~g~~ce~cg~~~~~~-----------~l--------------~~~~~~~~g~~~e~~~~~~~f~~l~~--------~~~~ 197 (673)
T PRK00133 151 YGDNCEVCGATYSPT-----------EL--------------INPKSAISGATPVLKESEHFFFKLPR--------FEEF 197 (673)
T ss_pred CCchhhhccccCChH-----------hh--------------cCCccccCCCcceEEecceEEEEHHH--------HHHH
Confidence 1111222221 0000 01 12789999999999999999999999 9999
Q ss_pred HHHhhhc-ceEecccchhHHHHhhh-CCCCcccccccCC-CceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccc
Q psy15223 1999 AITAINK-IKFFPSWGKDRLKSMIL-NRPDWTISRQRHW-GVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQN 2075 (2492)
Q Consensus 1999 ~~~~~~~-v~~~P~~~~~~~~~~l~-~~~DW~ISRqr~W-G~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~ 2075 (2492)
+++.+++ ..| |+..++.+.+||+ +++|||||||+.| |+|+|-
T Consensus 198 l~~~~~~~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~---------------------------------- 242 (673)
T PRK00133 198 LKEWITRSGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPG---------------------------------- 242 (673)
T ss_pred HHHHHhcCCCC-CHHHHHHHHHHHhCCCcccceeeeCCccceECCC----------------------------------
Confidence 9999864 565 8899999999997 6999999999999 999991
Q ss_pred cchhhhcCCCccCceecccccccccccCcchhhhccC-Cc-----cccCCcCce-----eeecccchhhhhHHHHHHHHH
Q psy15223 2076 LDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-SH-----KKQLIFPAD-----LYLEGSDQHRGWFHSSLLTSI 2144 (2492)
Q Consensus 2076 ~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~-~~-----~~~~~~P~D-----l~~~G~D~~r~wf~~~l~~~~ 2144 (2492)
.+..|++||||+.+.|++.... .. .++.|||.+ +++.|+|+++ ||..+|+++
T Consensus 243 ---------------~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~--fH~i~wpa~ 305 (673)
T PRK00133 243 ---------------APGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIY--FHTLFWPAM 305 (673)
T ss_pred ---------------CCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchh--HHHHHHHHH
Confidence 0235899999999998876631 11 124456333 8999999998 889999888
Q ss_pred Hhc-CCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCC-CcccccHHHHHHH--HHHHH
Q psy15223 2145 ILN-KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYS-KDLSISNEILNRV--VETYR 2219 (2492)
Q Consensus 2145 ~l~-~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~-~d~~fs~~~l~~~--~~~~~ 2219 (2492)
++. +..++++|++|||+++ +|+|||||+||+|+|.|++++||+|++|||+++ ++.+ +|.+|+++.+... .+..+
T Consensus 306 l~a~g~~lP~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~ 384 (673)
T PRK00133 306 LEGAGYRLPTNVFAHGFLTV-EGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVG 384 (673)
T ss_pred HHhCCCCCCCEEeeeccEEe-cCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 764 4455699999999997 999999999999999999999999999999996 5677 8999999987543 34567
Q ss_pred HHHHHHHHHHhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhh
Q psy15223 2220 RIRNTLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILK 2298 (2492)
Q Consensus 2220 kl~n~~r~~~~~~~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K 2298 (2492)
+++|.+.++...+.. +... .+ ....|+|++++++++.+.+.++|++|+|++|++.+++|+ +++|+|++..|
T Consensus 385 ~l~Nl~~R~~~~~~k~~~~~---~~---~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~N~yi~~~k 456 (673)
T PRK00133 385 KVVNFASRTAGFINKRFDGK---LP---DALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALA--DFANKYVDDNE 456 (673)
T ss_pred HHHHHHHHHHHHHHHhcCCC---CC---CCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcC
Confidence 888877665443221 2211 11 245699999999999999999999999999999999998 68999999999
Q ss_pred hhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2299 DRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2299 ~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
++.... .+..+..+++.++.++++.++++|+|||||+||+||+.|+.
T Consensus 457 pw~~~~-~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 457 PWKLAK-QDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNL 503 (673)
T ss_pred Chhhhc-CCHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCC
Confidence 864432 23445667788888999999999999999999999999985
No 74
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.9e-68 Score=709.25 Aligned_cols=458 Identities=21% Similarity=0.336 Sum_probs=390.6
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q psy15223 1600 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAY 1679 (2492)
Q Consensus 1600 ~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~ 1679 (2492)
++|+|++|||||||.+||||+++++.+|+++||+||+|++|.|++|+|+||.||+.+|+++ ++++.+ ++.
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~---g~~~~~-------~~~ 70 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEA---GISPQE-------LAD 70 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHc---CCCHHH-------HHH
Confidence 4799999999999999999999999999999999999999999999999999999999876 788866 788
Q ss_pred HHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceEE
Q psy15223 1680 EKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIY 1759 (2492)
Q Consensus 1680 ~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~y 1759 (2492)
++.+.++++|++|||. ++..+.|+++.|...++++|.+|+++|++|++..+|+||+.|+|+|+++|+.
T Consensus 71 ~~~~~~~~~l~~l~I~--~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~---------- 138 (511)
T PRK11893 71 RNSAAFKRLWEALNIS--YDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI---------- 138 (511)
T ss_pred HHHHHHHHHHHHhCCC--cCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc----------
Confidence 8999999999999995 5577899999999999999999999999999999999999999998775521
Q ss_pred EEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCC
Q psy15223 1760 VGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF 1839 (2492)
Q Consensus 1760 v~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~ 1839 (2492)
T Consensus 139 -------------------------------------------------------------------------------- 138 (511)
T PRK11893 139 -------------------------------------------------------------------------------- 138 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCC
Q psy15223 1840 KGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD 1919 (2492)
Q Consensus 1840 ~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~ 1919 (2492)
T Consensus 139 -------------------------------------------------------------------------------- 138 (511)
T PRK11893 139 -------------------------------------------------------------------------------- 138 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHH
Q psy15223 1920 DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA 1999 (2492)
Q Consensus 1920 ~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~ 1999 (2492)
+. .|+|||||+|++++.++|||+++++ +++++
T Consensus 139 ----------------------------~~------------~p~~~~~~~~~~~~~~~~~f~~l~~--------~~~~l 170 (511)
T PRK11893 139 ----------------------------ED------------GYRCPPTGAPVEWVEEESYFFRLSK--------YQDKL 170 (511)
T ss_pred ----------------------------CC------------CCCCCCCCCcceEEecCeEEEEcHH--------HHHHH
Confidence 00 0689999999999999999999999 99999
Q ss_pred HHhhhc-ceE-ecccchhHHHHhhh-CCCCccccc-ccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccc
Q psy15223 2000 ITAINK-IKF-FPSWGKDRLKSMIL-NRPDWTISR-QRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQN 2075 (2492)
Q Consensus 2000 ~~~~~~-v~~-~P~~~~~~~~~~l~-~~~DW~ISR-qr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~ 2075 (2492)
.+.+++ +.+ .|+..++++.+|++ +++|||||| |++||+|||..
T Consensus 171 ~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~--------------------------------- 217 (511)
T PRK11893 171 LELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGD--------------------------------- 217 (511)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCC---------------------------------
Confidence 999976 454 69999999999999 599999999 99999999941
Q ss_pred cchhhhcCCCccCceecccccccccccCcchhhhccCCc-------cccCCcCceeeecccchhhhhHHHHHHHHHHhcC
Q psy15223 2076 LDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-------KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNK 2148 (2492)
Q Consensus 2076 ~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~-------~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~ 2148 (2492)
+.+++||||||+++|++...... +++.+||.|++++|+||+++|+......+.++..
T Consensus 218 ----------------~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~ 281 (511)
T PRK11893 218 ----------------PKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGL 281 (511)
T ss_pred ----------------CCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCcceEecccccccchhHHHHHHHhCCC
Confidence 13589999999999998864321 2356789999999999999777666666666645
Q ss_pred CccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhcc-CCCCcccccHHHHHHHHH--HHHHHHHHH
Q psy15223 2149 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVE--TYRRIRNTL 2225 (2492)
Q Consensus 2149 ~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~-~~~~d~~fs~~~l~~~~~--~~~kl~n~~ 2225 (2492)
..| +++++|||+++ +|+|||||+||+|+|.|++++||+|++|||+++. ++.+|++|+++.+..+.+ ..+.++|++
T Consensus 282 ~~p-~~~~~~g~v~~-~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~ 359 (511)
T PRK11893 282 PLP-KRVFAHGFLTL-DGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLA 359 (511)
T ss_pred CCC-CEEEeeccEEE-CCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 666 99999999995 8999999999999999999999999999999975 789999999999966543 335566665
Q ss_pred HHHHhc----CCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhh
Q psy15223 2226 RFLLAN----TSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRL 2301 (2492)
Q Consensus 2226 r~~~~~----~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l 2301 (2492)
..+... ..++.+. ...+...|+|++++++++.+.+.++|++|+|+.|++.+++|+ ..+|+|++..|++.
T Consensus 360 ~r~~~~~~~~~~~~~~~-----~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~~pw~ 432 (511)
T PRK11893 360 QRTLSMIAKNFDGKVPE-----PGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALV--RAANKYIDEQAPWS 432 (511)
T ss_pred HHHHHHHHHhcCCCCCC-----CcccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHhhCCChh
Confidence 433221 1222221 123467899999999999999999999999999999999999 45899999888864
Q ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2302 YTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2302 ~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
... .+....++++.+++++++.++++|+|||||+||+||+.|+.
T Consensus 433 ~~~-~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 476 (511)
T PRK11893 433 LAK-TDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGV 476 (511)
T ss_pred hhc-CCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCC
Confidence 432 24455677899999999999999999999999999999974
No 75
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.3e-68 Score=666.99 Aligned_cols=327 Identities=46% Similarity=0.868 Sum_probs=303.0
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc-------CCCHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPIEIQN 522 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~-------~~~~~e~~~ 522 (2492)
++|+|++|||||||.+|||||++++++|+++||+||+||+|.|++||||||+|||.+|++.+|. +.+++++++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999998764 457999999
Q ss_pred HHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccc
Q psy15223 523 KARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKK 602 (2492)
Q Consensus 523 ~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~ 602 (2492)
.|+++|+++++.++++|++||++.||+++|.|++++|.+.++++|.+|+++|+||++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 999999999999999999999999999999999999999999999999999999999877766
Q ss_pred eeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHH
Q psy15223 603 KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKS 682 (2492)
Q Consensus 603 ~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~ 682 (2492)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCC
Q psy15223 683 CLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSD 762 (2492)
Q Consensus 683 ~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~ 762 (2492)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchh
Q psy15223 763 IINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEK 842 (2492)
Q Consensus 763 ~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~ 842 (2492)
|+++++++|||+++++
T Consensus 144 ----------------------------------------------------------~v~~~~~~qwf~~l~~------ 159 (338)
T cd00818 144 ----------------------------------------------------------PLIYRATPQWFIRVTK------ 159 (338)
T ss_pred ----------------------------------------------------------EEEEEecCeEEEEcHH------
Confidence 2345677899999998
Q ss_pred HHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcc
Q psy15223 843 KSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 922 (2492)
Q Consensus 843 ~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 922 (2492)
+++++++.+++++|+|+..++++.+||++++||||||||.||+|||+|+|++||...+
T Consensus 160 --~~~~l~~~~~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~~~~~~-------------------- 217 (338)
T cd00818 160 --IKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGEVLV-------------------- 217 (338)
T ss_pred --HHHHHHHHHhcCcEECHHHHHHHHHHHhcchhcceeeecccCceeeEEEecCCCeEEE--------------------
Confidence 9999999999999999999999999999999999999999999999999988775431
Q ss_pred ccccCchhhcCCCccCceecCCccccccccccccchhcccCc---cccCCcCeeeeecccccchhhHHHHHHHHHHhcCC
Q psy15223 923 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKS 999 (2492)
Q Consensus 923 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~ 999 (2492)
.++++|+|||||||+++.+.++... +++++||+|++++|+||+++|||++++++.++.+.
T Consensus 218 -----------------~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~~~~~ 280 (338)
T cd00818 218 -----------------RRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGK 280 (338)
T ss_pred -----------------ecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCeEEeecchHHhHHHHHHHHHHHHhcCC
Confidence 3578999999999999988775432 34678999999999999999999999999999999
Q ss_pred CCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc-Cccccccc
Q psy15223 1000 APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSI 1056 (2492)
Q Consensus 1000 ~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~~~d~~f 1056 (2492)
.||+++++||++++.+|+|||||+||+|+|++++++||+|++|||+++. +.++|++|
T Consensus 281 ~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 281 APYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred CccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHhCCCccCCCCC
Confidence 9999999999999999999999999999999999999999999999974 57888875
No 76
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=2.7e-67 Score=655.28 Aligned_cols=327 Identities=46% Similarity=0.867 Sum_probs=301.7
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhcc-------CCCHHHHHH
Q psy15223 1600 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPIEIQN 1672 (2492)
Q Consensus 1600 ~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~-------~~~~~e~~~ 1672 (2492)
++|+|++|||||||.+||||+++++++|+++||+||+||+|.|++||||||+|||.+|++.+|. +.+++++.+
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999998764 457999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCccccccccccee
Q psy15223 1673 KARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKK 1752 (2492)
Q Consensus 1673 ~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~ 1752 (2492)
.|++++.++++.++++|++||++.||+++|.|++++|.+.++++|.+|+++|+||++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 999999999999999999999999999999999999999999999999999999999888877
Q ss_pred eecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHH
Q psy15223 1753 KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKS 1832 (2492)
Q Consensus 1753 ~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~ 1832 (2492)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCC
Q psy15223 1833 CLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSD 1912 (2492)
Q Consensus 1833 ~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~ 1912 (2492)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchh
Q psy15223 1913 IINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEK 1992 (2492)
Q Consensus 1913 ~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~ 1992 (2492)
|++++.++|||+++++
T Consensus 144 ----------------------------------------------------------~v~~~~~~qwf~~l~~------ 159 (338)
T cd00818 144 ----------------------------------------------------------PLIYRATPQWFIRVTK------ 159 (338)
T ss_pred ----------------------------------------------------------EEEEEecCeEEEEcHH------
Confidence 1234567899999998
Q ss_pred HHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccc
Q psy15223 1993 KSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 2072 (2492)
Q Consensus 1993 ~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 2072 (2492)
+++++++.+++++|+|+..++++.+||++++||||||||+||+|||+|+|++++.+.+
T Consensus 160 --~~~~l~~~~~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~~~~~~-------------------- 217 (338)
T cd00818 160 --IKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGEVLV-------------------- 217 (338)
T ss_pred --HHHHHHHHHhcCcEECHHHHHHHHHHHhcchhcceeeecccCceeeEEEecCCCeEEE--------------------
Confidence 9999999999999999999999999999999999999999999999999887654320
Q ss_pred ccccchhhhcCCCccCceecccccccccccCcchhhhccCC---ccccCCcCceeeecccchhhhhHHHHHHHHHHhcCC
Q psy15223 2073 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGS---HKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKS 2149 (2492)
Q Consensus 2073 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~---~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~ 2149 (2492)
.++++|+||||||++++++.++.. .+++.+||+|++++|+||+++|||++++++.++.+.
T Consensus 218 -----------------~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~~~~~ 280 (338)
T cd00818 218 -----------------RRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGK 280 (338)
T ss_pred -----------------ecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCeEEeecchHHhHHHHHHHHHHHHhcCC
Confidence 457899999999999998877432 234678999999999999999999999999999999
Q ss_pred ccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccc
Q psy15223 2150 APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 2206 (2492)
Q Consensus 2150 ~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~f 2206 (2492)
.||+++++||++++.+|+|||||+||+|+|.+++++||+|++|||+++ ++.++|++|
T Consensus 281 ~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 281 APYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred CccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHhCCCccCCCCC
Confidence 999999999999999999999999999999999999999999999996 468889875
No 77
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-66 Score=655.17 Aligned_cols=488 Identities=21% Similarity=0.338 Sum_probs=404.3
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHH
Q psy15223 1599 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 1678 (2492)
Q Consensus 1599 ~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~ 1678 (2492)
.++|+|+.++|||||.|||||+++++.+||++||+||+|++|+|+.|.|.||+||+.+|+++ |++|++ ++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~---g~tP~e-------l~ 73 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKE---GITPQE-------LV 73 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHc---CCCHHH-------HH
Confidence 47899999999999999999999999999999999999999999999999999999999998 999998 78
Q ss_pred HHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceE
Q psy15223 1679 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 1758 (2492)
Q Consensus 1679 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~ 1758 (2492)
+++.+.+++.++.|+|++ |++.+|+++.+.+.++++|.+|+++|+||.+..++.||++|+++|+|.+|+=.
T Consensus 74 d~~~~~~~~~~~~l~Isf--D~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~------- 144 (558)
T COG0143 74 DKNHEEFKELFKALNISF--DNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGT------- 144 (558)
T ss_pred HHHHHHHHHHHHHhCCcc--cccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheecc-------
Confidence 888899999999999955 78999999999999999999999999999999999999999999999988610
Q ss_pred EEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1759 yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
.|.- +.+
T Consensus 145 ----------------------------------------------cp~c----------g~~----------------- 151 (558)
T COG0143 145 ----------------------------------------------CPKC----------GGE----------------- 151 (558)
T ss_pred ----------------------------------------------CCCc----------Ccc-----------------
Confidence 0000 000
Q ss_pred CcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC
Q psy15223 1839 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 1918 (2492)
Q Consensus 1839 ~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd 1918 (2492)
+ +.|.++-.+++. .+|
T Consensus 152 ------------~------------------------------------------arGD~Ce~Cg~~--------~~P-- 167 (558)
T COG0143 152 ------------D------------------------------------------ARGDQCENCGRT--------LDP-- 167 (558)
T ss_pred ------------c------------------------------------------cCcchhhhccCc--------CCc--
Confidence 0 000000000000 011
Q ss_pred CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1919 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1919 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
..-.-|+||+||...++|.+++||+++++ +.+.
T Consensus 168 ---------------------------------------~~l~~p~~~i~g~~p~~r~~~hyFf~L~~--------~~~~ 200 (558)
T COG0143 168 ---------------------------------------TELINPVCVISGATPEVREEEHYFFRLSK--------FQDK 200 (558)
T ss_pred ---------------------------------------hhcCCCeeEeeCCCcccccceeEEEEHHH--------hHHH
Confidence 01123899999999999999999999999 8999
Q ss_pred HHHhhhc--ceEecccchhHHHHhhh-CCCCccccc-ccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccccc
Q psy15223 1999 AITAINK--IKFFPSWGKDRLKSMIL-NRPDWTISR-QRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQ 2074 (2492)
Q Consensus 1999 ~~~~~~~--v~~~P~~~~~~~~~~l~-~~~DW~ISR-qr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~ 2074 (2492)
+++++++ -.+.|++.++.+.+||+ +++|||||| .-.||+|+|-
T Consensus 201 L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~--------------------------------- 247 (558)
T COG0143 201 LLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPG--------------------------------- 247 (558)
T ss_pred HHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCC---------------------------------
Confidence 9999975 35589999999999998 599999999 8899999991
Q ss_pred ccchhhhcCCCccCceecccccccccccCcchhhhccCCc------cccCCcCce----eeecccchhhhhHHHHHHHHH
Q psy15223 2075 NLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH------KKQLIFPAD----LYLEGSDQHRGWFHSSLLTSI 2144 (2492)
Q Consensus 2075 ~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~------~~~~~~P~D----l~~~G~D~~r~wf~~~l~~~~ 2144 (2492)
-...|++||||.-+.|.+.+.... .++.|||.| +|+.|+|+++ ||+.+|+++
T Consensus 248 ----------------~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~--FHav~wPam 309 (558)
T COG0143 248 ----------------DPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIR--FHAVYWPAM 309 (558)
T ss_pred ----------------CCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCc--chhhHHHHH
Confidence 023589999999999999886532 236679998 9999999999 999999999
Q ss_pred HhcCCc-cccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHH--HHHH
Q psy15223 2145 ILNKSA-PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE--TYRR 2220 (2492)
Q Consensus 2145 ~l~~~~-pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~--~~~k 2220 (2492)
++.... .+++|++|||++ .+|+|||||+||+|+|.++++.||+|++||||+. .+.++|.+||++.+.+..| ..++
T Consensus 310 L~~~~~~lP~~i~ahg~l~-~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~ 388 (558)
T COG0143 310 LMAAGLPLPTRIFAHGFLT-LEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANK 388 (558)
T ss_pred HHhCCCCCCCEEEeeeeEE-ECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 987544 458899999988 7899999999999999999999999999999996 6899999999999977654 4566
Q ss_pred HHHHHHHHHhc----CCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHh
Q psy15223 2221 IRNTLRFLLAN----TSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDI 2296 (2492)
Q Consensus 2221 l~n~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~ 2296 (2492)
+-|.+...++. .++..|... .... ..|+.++..+.++.+.+.++|+.++|++|+..+++++ ...|.||+.
T Consensus 389 lgNl~~R~~~fi~k~~~g~vp~~~---~~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~--~~~N~Yi~~ 462 (558)
T COG0143 389 LGNLANRTLGFINKYFDGVVPAAG---APDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALA--SRANKYIDE 462 (558)
T ss_pred HHHHHHHHHHHHHhccCCcCCccc---cccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHhhc
Confidence 66666555543 332222211 1123 7899999999999999999999999999999999999 569999998
Q ss_pred hhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccC
Q psy15223 2297 LKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347 (2492)
Q Consensus 2297 ~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~ 2347 (2492)
.+||-.......++..++..++.++++.+..+|+||||.+|++||+.|+..
T Consensus 463 ~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~ 513 (558)
T COG0143 463 QAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLE 513 (558)
T ss_pred CCCchhhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCc
Confidence 877654443224555667888889999999999999999999999999853
No 78
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-65 Score=654.31 Aligned_cols=487 Identities=22% Similarity=0.369 Sum_probs=406.0
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHH
Q psy15223 449 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 528 (2492)
Q Consensus 449 ~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a 528 (2492)
.++|+|+.++|||||.|||||++.++.+||++||+||+|++|+|+.|+|+||+||+.+|+++ +++|++ ++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~---g~tP~e-------l~ 73 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKE---GITPQE-------LV 73 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHc---CCCHHH-------HH
Confidence 46899999999999999999999999999999999999999999999999999999999998 999999 88
Q ss_pred HHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEE
Q psy15223 529 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 608 (2492)
Q Consensus 529 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~ 608 (2492)
+++.+.+++.|+.|+| ++|++.+|+++.+.+.++++|.+|+++|+||.+..+++||++|+++|+|.+|+=.
T Consensus 74 d~~~~~~~~~~~~l~I--sfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~------- 144 (558)
T COG0143 74 DKNHEEFKELFKALNI--SFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGT------- 144 (558)
T ss_pred HHHHHHHHHHHHHhCC--cccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheecc-------
Confidence 8899999999999999 5578999999999999999999999999999999999999999999999998710
Q ss_pred EEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC
Q psy15223 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 688 (2492)
Q Consensus 609 yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 688 (2492)
.|. + |
T Consensus 145 ----------------------------------------------cp~---c--------------------------g 149 (558)
T COG0143 145 ----------------------------------------------CPK---C--------------------------G 149 (558)
T ss_pred ----------------------------------------------CCC---c--------------------------C
Confidence 000 0 0
Q ss_pred CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC
Q psy15223 689 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768 (2492)
Q Consensus 689 ~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd 768 (2492)
. .+-- +|. |..+|- .++|.
T Consensus 150 ~----------~~ar-----------------------GD~-----------------------Ce~Cg~----~~~P~- 168 (558)
T COG0143 150 G----------EDAR-----------------------GDQ-----------------------CENCGR----TLDPT- 168 (558)
T ss_pred c----------cccC-----------------------cch-----------------------hhhccC----cCCch-
Confidence 0 0000 000 001110 00110
Q ss_pred CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 769 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 848 (2492)
Q Consensus 769 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~ 848 (2492)
.-.-|.||.||...++|.+++||+++++ +.++
T Consensus 169 ----------------------------------------~l~~p~~~i~g~~p~~r~~~hyFf~L~~--------~~~~ 200 (558)
T COG0143 169 ----------------------------------------ELINPVCVISGATPEVREEEHYFFRLSK--------FQDK 200 (558)
T ss_pred ----------------------------------------hcCCCeeEeeCCCcccccceeEEEEHHH--------hHHH
Confidence 0012789999999999999999999998 8999
Q ss_pred HHHHhhcc--eEecchhhHHHHHHHh-cCCCeeeec-cccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcccc
Q psy15223 849 AITAINKI--KFFPSWGKDRLKSMIL-NRPDWTISR-QRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQ 924 (2492)
Q Consensus 849 ~~~~i~~v--~~~P~~~~~rl~~~l~-~~~DWcISR-qr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~ 924 (2492)
+++.+++- ...|...++.+.+||+ ++.|||||| .-.||+|+|-
T Consensus 201 L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~--------------------------------- 247 (558)
T COG0143 201 LLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPG--------------------------------- 247 (558)
T ss_pred HHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCC---------------------------------
Confidence 99999863 4589999999999998 599999999 8899999991
Q ss_pred ccCchhhcCCCccCceecCCccccccccccccchhcccCc------cccCCcCee----eeecccccchhhHHHHHHHHH
Q psy15223 925 NLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH------KKQLIFPAD----LYLEGSDQHRGWFHSSLLTSI 994 (2492)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~------~~~~~~p~D----l~~~G~D~~rgwf~s~l~~~~ 994 (2492)
-...|++||||.-+.|.+.++... .++.|||+| +|+.|+|+++ ||+.+|+++
T Consensus 248 ----------------~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~--FHav~wPam 309 (558)
T COG0143 248 ----------------DPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIR--FHAVYWPAM 309 (558)
T ss_pred ----------------CCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCc--chhhHHHHH
Confidence 123589999999999998886642 347899999 9999999999 999999999
Q ss_pred HhcCCCC-ceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHH--HHHH
Q psy15223 995 ILNKSAP-YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE--TYRR 1070 (2492)
Q Consensus 995 ~~~~~~p-~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~--~~~k 1070 (2492)
++.-..| +++|++|||++ .+|+|||||+||+|+|.++++.||+|++||||+. .+.++|.+||++.+.+..+ ..++
T Consensus 310 L~~~~~~lP~~i~ahg~l~-~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~ 388 (558)
T COG0143 310 LMAAGLPLPTRIFAHGFLT-LEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANK 388 (558)
T ss_pred HHhCCCCCCCEEEeeeeEE-ECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 8875544 59999999998 7899999999999999999999999999999996 6788999999999977653 5566
Q ss_pred HHHHHHHHhhcCC----CCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHh
Q psy15223 1071 IRNTLRFLLANTS----DFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDI 1146 (2492)
Q Consensus 1071 l~n~~rf~l~~l~----~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~ 1146 (2492)
+-|.+...++.+. +-.|... . ... +.|+.++..+.++.+.+.++|++++|++|+..+++++ ...|.||+.
T Consensus 389 lgNl~~R~~~fi~k~~~g~vp~~~--~-~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~--~~~N~Yi~~ 462 (558)
T COG0143 389 LGNLANRTLGFINKYFDGVVPAAG--A-PDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALA--SRANKYIDE 462 (558)
T ss_pred HHHHHHHHHHHHHhccCCcCCccc--c-ccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHhhc
Confidence 7777666655333 2222211 1 123 7899999999999999999999999999999999999 459999998
Q ss_pred hhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1147 LKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1147 ~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
.+||-........+.+++..++.++++.+..+|+||||.+|+++|+.|+.
T Consensus 463 ~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~ 512 (558)
T COG0143 463 QAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGL 512 (558)
T ss_pred CCCchhhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCC
Confidence 88876544322455567788888999999999999999999999999985
No 79
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.5e-58 Score=575.39 Aligned_cols=305 Identities=38% Similarity=0.719 Sum_probs=280.9
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc---CCCHHHHHHHHHHH
Q psy15223 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK---NLSPIEIQNKARAL 527 (2492)
Q Consensus 451 ~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~---~~~~~e~~~~~~~~ 527 (2492)
+|+|++|||||||.+||||+++++++|+++||+||+||+|.|++||||||+|||.+|++..+. ...++++.+.|+++
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEF 80 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999997653 45678999999999
Q ss_pred HHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccE
Q psy15223 528 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS 607 (2492)
Q Consensus 528 a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s 607 (2492)
|+++.+.++++|++|||+.||+++|.|+++.|...++++|.+|+++|+||++.++|
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------------------------ 136 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------------------------ 136 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------------------------
Confidence 99999999999999999999999999999999999999999999999999975443
Q ss_pred EEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHc
Q psy15223 608 IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF 687 (2492)
Q Consensus 608 ~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~ 687 (2492)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCccccc
Q psy15223 688 GFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 767 (2492)
Q Consensus 688 ~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~v 767 (2492)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHH
Q psy15223 768 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 847 (2492)
Q Consensus 768 d~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~ 847 (2492)
+.++|||+++++ +++
T Consensus 137 ---------------------------------------------------------~~~~~~f~~~~~--------l~~ 151 (312)
T cd00668 137 ---------------------------------------------------------RITEQWFFDMPK--------FKE 151 (312)
T ss_pred ---------------------------------------------------------EeeeeEEEEcHH--------HHH
Confidence 334589999988 999
Q ss_pred HHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccccC
Q psy15223 848 SAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLD 927 (2492)
Q Consensus 848 ~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~ 927 (2492)
++++.+++++|.|+..++++.+||++..|||||||+.||+|+|
T Consensus 152 ~~~~~~~~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P------------------------------------- 194 (312)
T cd00668 152 KLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP------------------------------------- 194 (312)
T ss_pred HHHHHHhcCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCC-------------------------------------
Confidence 9999999988999999999999999888999999999999999
Q ss_pred chhhcCCCccCceecCCccccccccccccchhcccCcc---ccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCceE
Q psy15223 928 IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK---KQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKA 1004 (2492)
Q Consensus 928 ~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~---~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~ 1004 (2492)
++++||||||++++.++++...+ +..+||.|+|++|+||+++|+.+.++.+.++.+..|+++
T Consensus 195 ---------------~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~ 259 (312)
T cd00668 195 ---------------EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKN 259 (312)
T ss_pred ---------------cccccchhhccHHHHHHcCCCccchhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcce
Confidence 25899999999999888765432 356789999999999999999999999999988889999
Q ss_pred EEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCccccccc
Q psy15223 1005 LLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 1056 (2492)
Q Consensus 1005 v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~f 1056 (2492)
+++|||+++++|+|||||+||+|+|++++++||+|++|||+++ +++.+|.+|
T Consensus 260 ~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 260 LLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred eEECcEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCCCC
Confidence 9999999988889999999999999999999999999999997 458888876
No 80
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.4e-57 Score=566.66 Aligned_cols=305 Identities=38% Similarity=0.714 Sum_probs=280.2
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhcc---CCCHHHHHHHHHHH
Q psy15223 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK---NLSPIEIQNKARAL 1677 (2492)
Q Consensus 1601 ~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~---~~~~~e~~~~~~~~ 1677 (2492)
||+|++|||||||.+||||+++++++|+++||+||+||+|.|++||||||+|||.+|++..+. ...++++.+.|+++
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEF 80 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999998653 45678999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecce
Q psy15223 1678 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS 1757 (2492)
Q Consensus 1678 ~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~ 1757 (2492)
+.++.+.++++|++||+++||+++|.|++|.|...++++|.+|+++|+||++.++|
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------------------------ 136 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------------------------ 136 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------------------------
Confidence 99999999999999999999999999999999999999999999999999986655
Q ss_pred EEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHc
Q psy15223 1758 IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF 1837 (2492)
Q Consensus 1758 ~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~ 1837 (2492)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCccccc
Q psy15223 1838 GFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 1917 (2492)
Q Consensus 1838 ~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~v 1917 (2492)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHH
Q psy15223 1918 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 1997 (2492)
Q Consensus 1918 d~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~ 1997 (2492)
+.++|||+++++ +++
T Consensus 137 ---------------------------------------------------------~~~~~~f~~~~~--------l~~ 151 (312)
T cd00668 137 ---------------------------------------------------------RITEQWFFDMPK--------FKE 151 (312)
T ss_pred ---------------------------------------------------------EeeeeEEEEcHH--------HHH
Confidence 223478888888 899
Q ss_pred HHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccc
Q psy15223 1998 SAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLD 2077 (2492)
Q Consensus 1998 ~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~ 2077 (2492)
++++.+++++|.|+..++++.+||++..|||||||++||+|+|
T Consensus 152 ~~~~~~~~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P------------------------------------- 194 (312)
T cd00668 152 KLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP------------------------------------- 194 (312)
T ss_pred HHHHHHhcCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCC-------------------------------------
Confidence 9999999888999999999999999888999999999999999
Q ss_pred hhhhcCCCccCceecccccccccccCcchhhhccCCc---cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccE
Q psy15223 2078 IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKA 2154 (2492)
Q Consensus 2078 ~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~ 2154 (2492)
++++||||||++++++++.... +++.+||.|++++|+||+++|+..+++.+.++.+..|+++
T Consensus 195 ---------------~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~ 259 (312)
T cd00668 195 ---------------EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKN 259 (312)
T ss_pred ---------------cccccchhhccHHHHHHcCCCccchhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcce
Confidence 1589999999999998876433 2356789999999999999999999999999888889999
Q ss_pred EEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccc
Q psy15223 2155 LLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 2206 (2492)
Q Consensus 2155 v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~f 2206 (2492)
+++|||+++.+|+|||||+||+|+|.+++++||+|++|||+++ +++++|.+|
T Consensus 260 ~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 260 LLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred eEECcEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCCCC
Confidence 9999999988889999999999999999999999999999996 568888876
No 81
>KOG0436|consensus
Probab=100.00 E-value=4.7e-55 Score=503.67 Aligned_cols=468 Identities=22% Similarity=0.359 Sum_probs=385.4
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHH
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARAL 527 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~ 527 (2492)
+.+.|++++|.-|+|..+||||+++-+++|.|+||+|++|..|.|..|+|.|||.|+..|+.. +.+|.+ +
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatn---G~~P~e-------~ 106 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATN---GRNPPE-------L 106 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhc---CCChHH-------H
Confidence 456899999999999999999999999999999999999999999999999999999998875 788988 6
Q ss_pred HHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccE
Q psy15223 528 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS 607 (2492)
Q Consensus 528 a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s 607 (2492)
+++..+.+++.++..||.+ +++.+|+||.+++.|++++..+.++|+||++....+||.+|+|++.|++|.-.
T Consensus 107 cDr~s~~f~qL~k~~gi~y--t~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~------ 178 (578)
T KOG0436|consen 107 CDRISQSFRQLWKDAGIAY--TKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKN------ 178 (578)
T ss_pred HhhhhHHHHHHHHHhCcch--hheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcC------
Confidence 7778888999999999955 79999999999999999999999999999999999999999999999877510
Q ss_pred EEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHc
Q psy15223 608 IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF 687 (2492)
Q Consensus 608 ~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~ 687 (2492)
|.
T Consensus 179 ------------------------------------------------p~------------------------------ 180 (578)
T KOG0436|consen 179 ------------------------------------------------PC------------------------------ 180 (578)
T ss_pred ------------------------------------------------CC------------------------------
Confidence 00
Q ss_pred CCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCccccc
Q psy15223 688 GFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 767 (2492)
Q Consensus 688 ~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~v 767 (2492)
T Consensus 181 -------------------------------------------------------------------------------- 180 (578)
T KOG0436|consen 181 -------------------------------------------------------------------------------- 180 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHH
Q psy15223 768 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 847 (2492)
Q Consensus 768 d~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~ 847 (2492)
..|+ ++.--||+||.++..+.+|+.+++ +++
T Consensus 181 -~~gk----------------------------------------~vsmEsg~~vv~~kE~NY~FrLSk--------fqk 211 (578)
T KOG0436|consen 181 -PPGK----------------------------------------VVSMESGNPVVWRKEDNYFFRLSK--------FQK 211 (578)
T ss_pred -CCCc----------------------------------------eeeeccCCceeEecccceeeeHHh--------hhh
Confidence 0000 011247889999999999999999 888
Q ss_pred HHHHHhhc-ceE-ecchhhHHHHHHHh-cCCCeeeec--cc-cCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCc
Q psy15223 848 SAITAINK-IKF-FPSWGKDRLKSMIL-NRPDWTISR--QR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 921 (2492)
Q Consensus 848 ~~~~~i~~-v~~-~P~~~~~rl~~~l~-~~~DWcISR--qr-~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 921 (2492)
.+.+.+++ -+| .|+..++....||+ +++|-.||| +| .||+|+|-
T Consensus 212 ~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~------------------------------ 261 (578)
T KOG0436|consen 212 PLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPG------------------------------ 261 (578)
T ss_pred HHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCC------------------------------
Confidence 89998875 444 78888999999999 799999999 66 99999992
Q ss_pred cccccCchhhcCCCccCceecCCccccccccccccchhcccCccc-------cCCcCeeeeecccccchhhHHHHHHHHH
Q psy15223 922 IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK-------QLIFPADLYLEGSDQHRGWFHSSLLTSI 994 (2492)
Q Consensus 922 ~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~-------~~~~p~Dl~~~G~D~~rgwf~s~l~~~~ 994 (2492)
.+..+++||||+-+.|++++++.++. ..+||+.+|+.|+|++| ||...|++.
T Consensus 262 -------------------ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlr--FHavYWPaf 320 (578)
T KOG0436|consen 262 -------------------DDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILR--FHAVYWPAF 320 (578)
T ss_pred -------------------CCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhh--hhhhhhHHH
Confidence 24578999999999999999876421 57899999999999999 999999999
Q ss_pred HhcCCCC-ceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHHHHHHH
Q psy15223 995 ILNKSAP-YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIR 1072 (2492)
Q Consensus 995 ~~~~~~p-~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~ 1072 (2492)
++....| .+.+++||++. .+|.|||||+||||+|.+++++||+|++|||++. +.++.|-+|+++.+....+. .|+
T Consensus 321 LmaAGlplP~~I~vHghwt-~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~--~La 397 (578)
T KOG0436|consen 321 LMAAGLPLPKMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNA--HLA 397 (578)
T ss_pred HHhcCCCCccEEEEeeeee-ecceecchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHH--HHH
Confidence 8875554 59999999998 8999999999999999999999999999999996 67899999999988766543 344
Q ss_pred HHHHHHhhcCCC--CCCCc---ccc-cccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHh
Q psy15223 1073 NTLRFLLANTSD--FNPNI---NII-KISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDI 1146 (2492)
Q Consensus 1073 n~~rf~l~~l~~--~~~~~---~~~-~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~ 1146 (2492)
|++..++.++.+ ++++. ..+ +.......+.-+.+.++++.+.+.+.|++|.+..|++++...++. .|-|++.
T Consensus 398 ~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~--~ntlvq~ 475 (578)
T KOG0436|consen 398 NTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNA--GNTLVQQ 475 (578)
T ss_pred HHHHHHHHHHhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHh--hhhhhhh
Confidence 444444433322 22221 011 111222334457788999999999999999999999999999865 7899998
Q ss_pred hhhhhcccc-C-ChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1147 LKDRLYTTK-K-NSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1147 ~Kdrl~~~~-~-~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
.++|-...+ . +.+..........++|+.+..+|.||+|-++.++++.|+-
T Consensus 476 ~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgv 527 (578)
T KOG0436|consen 476 RAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGV 527 (578)
T ss_pred cCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCC
Confidence 888754322 2 2333444455567889999999999999999999999974
No 82
>KOG0436|consensus
Probab=100.00 E-value=8.7e-54 Score=493.24 Aligned_cols=469 Identities=22% Similarity=0.345 Sum_probs=383.0
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHH
Q psy15223 1598 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARAL 1677 (2492)
Q Consensus 1598 ~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~ 1677 (2492)
+.+.|+++.|.-|+|..+||||+++-+++|.++||+|++|..|.|..|+|.||+.|+.+|+.. |.+|.+ +
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatn---G~~P~e-------~ 106 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATN---GRNPPE-------L 106 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhc---CCChHH-------H
Confidence 446899999999999999999999999999999999999999999999999999999999876 788887 5
Q ss_pred HHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecce
Q psy15223 1678 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS 1757 (2492)
Q Consensus 1678 ~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~ 1757 (2492)
+++..+.+.+.++..|+.+ +++.+|+||.++..|++.+..++++|+||++.+...||.+|+|++.|++|.-
T Consensus 107 cDr~s~~f~qL~k~~gi~y--t~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k------- 177 (578)
T KOG0436|consen 107 CDRISQSFRQLWKDAGIAY--TKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLK------- 177 (578)
T ss_pred HhhhhHHHHHHHHHhCcch--hheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhc-------
Confidence 6677788888899999955 7999999999999999999999999999999999999999999998877641
Q ss_pred EEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHc
Q psy15223 1758 IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF 1837 (2492)
Q Consensus 1758 ~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~ 1837 (2492)
+ |.
T Consensus 178 --------~---------------------------------------p~------------------------------ 180 (578)
T KOG0436|consen 178 --------N---------------------------------------PC------------------------------ 180 (578)
T ss_pred --------C---------------------------------------CC------------------------------
Confidence 0 00
Q ss_pred CCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCccccc
Q psy15223 1838 GFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 1917 (2492)
Q Consensus 1838 ~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~v 1917 (2492)
.
T Consensus 181 ------------------------~------------------------------------------------------- 181 (578)
T KOG0436|consen 181 ------------------------P------------------------------------------------------- 181 (578)
T ss_pred ------------------------C-------------------------------------------------------
Confidence 0
Q ss_pred CCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHH
Q psy15223 1918 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 1997 (2492)
Q Consensus 1918 d~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~ 1997 (2492)
.|+ ++.--||+||.++-.+.+|+++++ +++
T Consensus 182 --~gk----------------------------------------~vsmEsg~~vv~~kE~NY~FrLSk--------fqk 211 (578)
T KOG0436|consen 182 --PGK----------------------------------------VVSMESGNPVVWRKEDNYFFRLSK--------FQK 211 (578)
T ss_pred --CCc----------------------------------------eeeeccCCceeEecccceeeeHHh--------hhh
Confidence 000 111247889999999999999999 778
Q ss_pred HHHHhhh-cceE-ecccchhHHHHhhh-CCCCccccc--cc-CCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcc
Q psy15223 1998 SAITAIN-KIKF-FPSWGKDRLKSMIL-NRPDWTISR--QR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 2071 (2492)
Q Consensus 1998 ~~~~~~~-~v~~-~P~~~~~~~~~~l~-~~~DW~ISR--qr-~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 2071 (2492)
.+.+.++ +-+| .|+..++....||+ +++|-.||| +| .||+|+|-
T Consensus 212 ~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~------------------------------ 261 (578)
T KOG0436|consen 212 PLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPG------------------------------ 261 (578)
T ss_pred HHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCC------------------------------
Confidence 8888886 3444 67788899999999 799999999 65 89999991
Q ss_pred cccccchhhhcCCCccCceecccccccccccCcchhhhccCCcc-------ccCCcCceeeecccchhhhhHHHHHHHHH
Q psy15223 2072 IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK-------KQLIFPADLYLEGSDQHRGWFHSSLLTSI 2144 (2492)
Q Consensus 2072 ~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~-------~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~ 2144 (2492)
.+..+++||||.-+.|++++...+. ...+||+.+|+.|+|++| ||...|++.
T Consensus 262 -------------------ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlr--FHavYWPaf 320 (578)
T KOG0436|consen 262 -------------------DDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILR--FHAVYWPAF 320 (578)
T ss_pred -------------------CCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhh--hhhhhhHHH
Confidence 1356899999999999999965532 156799999999999999 999999999
Q ss_pred HhcCC-ccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHHHHHHHH
Q psy15223 2145 ILNKS-APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIR 2222 (2492)
Q Consensus 2145 ~l~~~-~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~ 2222 (2492)
++... ++.+.|++||+++ .+|.|||||+||||+|.+++++||+|++||||+. +.++.|-+|+++.+....+. .|.
T Consensus 321 LmaAGlplP~~I~vHghwt-~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~--~La 397 (578)
T KOG0436|consen 321 LMAAGLPLPKMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNA--HLA 397 (578)
T ss_pred HHhcCCCCccEEEEeeeee-ecceecchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHH--HHH
Confidence 98755 5568899999987 8999999999999999999999999999999995 67899999999998776543 344
Q ss_pred HHHHHHHhcCCC--CCCCcc---cc-cccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHh
Q psy15223 2223 NTLRFLLANTSD--FNPNIN---II-KISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDI 2296 (2492)
Q Consensus 2223 n~~r~~~~~~~~--~~~~~~---~~-~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~ 2296 (2492)
|++..+++++.+ ++++.. .. +.......+.-+.+.++++.+.+.+.|++|.+..|++++...++. .|-|++.
T Consensus 398 ~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~--~ntlvq~ 475 (578)
T KOG0436|consen 398 NTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNA--GNTLVQQ 475 (578)
T ss_pred HHHHHHHHHHhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHh--hhhhhhh
Confidence 454444443322 222210 00 111123345567889999999999999999999999999998854 7889998
Q ss_pred hhhhhcccc--CChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccC
Q psy15223 2297 LKDRLYTTK--KNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347 (2492)
Q Consensus 2297 ~K~~l~~~~--~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~ 2347 (2492)
.++|..... .+.+........+.++++.+..+|.||+|-++.+++..|+-.
T Consensus 476 ~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvs 528 (578)
T KOG0436|consen 476 RAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVS 528 (578)
T ss_pred cCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCC
Confidence 887654322 223334444556677899999999999999999999999753
No 83
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=3.3e-51 Score=509.45 Aligned_cols=306 Identities=26% Similarity=0.492 Sum_probs=269.4
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHH
Q psy15223 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYE 530 (2492)
Q Consensus 451 ~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~ 530 (2492)
+|+|+.|||||||.|||||+++++++|+++||+||+|++|.|++|||+||+||+.+|+++ +.+|.+ ++++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~---g~~~~e-------~~~~ 70 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE---GVTPQE-------LCDK 70 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHc---CCCHHH-------HHHH
Confidence 589999999999999999999999999999999999999999999999999999999886 788876 7888
Q ss_pred HHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEEE
Q psy15223 531 KIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYV 610 (2492)
Q Consensus 531 ~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~yv 610 (2492)
+.+.+++++++||| ++|..++|+++.|...++++|.+|+++|++|++..+++|||.|+|+|+
T Consensus 71 ~~~~~~~~l~~LgI--~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~---------------- 132 (319)
T cd00814 71 YHEIFKDLFKWLNI--SFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP---------------- 132 (319)
T ss_pred HHHHHHHHHHHcCC--cCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee----------------
Confidence 99999999999999 567789999999999999999999999999999999999999987764
Q ss_pred EeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCCc
Q psy15223 611 GFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFK 690 (2492)
Q Consensus 611 ~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~ 690 (2492)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCCC
Q psy15223 691 GNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDD 770 (2492)
Q Consensus 691 ~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~~ 770 (2492)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHH
Q psy15223 771 GNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAI 850 (2492)
Q Consensus 771 G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~ 850 (2492)
+++.++|||+++++ +++.++
T Consensus 133 ----------------------------------------------------e~~~~~~~ff~l~~--------~~~~l~ 152 (319)
T cd00814 133 ----------------------------------------------------EWREEEHYFFRLSK--------FQDRLL 152 (319)
T ss_pred ----------------------------------------------------EEEeeeeEEEEhHH--------HHHHHH
Confidence 12345689999988 899999
Q ss_pred HHhhcce--EecchhhHHHHHHHhc-CCCeeeeccc-cCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcccccc
Q psy15223 851 TAINKIK--FFPSWGKDRLKSMILN-RPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNL 926 (2492)
Q Consensus 851 ~~i~~v~--~~P~~~~~rl~~~l~~-~~DWcISRqr-~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~ 926 (2492)
+.+++.. +.|+..++.+.+||++ ++|||||||. .||+|+|..
T Consensus 153 ~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~---------------------------------- 198 (319)
T cd00814 153 EWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLD---------------------------------- 198 (319)
T ss_pred HHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCC----------------------------------
Confidence 9987644 7899999999999996 9999999999 999999940
Q ss_pred CchhhcCCCccCceecCCccccccccccccchhcccCcc-------ccCCcCeeeeecccccchhhHHHHHHHHHHhc-C
Q psy15223 927 DIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK-------KQLIFPADLYLEGSDQHRGWFHSSLLTSIILN-K 998 (2492)
Q Consensus 927 ~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~-------~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~-~ 998 (2492)
++++++|||||.+.+++..+...+ +...+|.|+++.|+|+++ ||..+++++++. +
T Consensus 199 ---------------~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~--fh~~~~pa~l~~~~ 261 (319)
T cd00814 199 ---------------PGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIR--FHAIYWPAMLLGAG 261 (319)
T ss_pred ---------------CCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhh--hhHHHHHHHHHhCC
Confidence 236899999999999877654321 134679999999999998 677788766543 4
Q ss_pred CCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCccccccc
Q psy15223 999 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 1056 (2492)
Q Consensus 999 ~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~f 1056 (2492)
..|++.+++|||++ .+|+|||||+||+|+|.++++.||+|++|||+++ .+..+|.+|
T Consensus 262 ~~~~~~~~~~~~~~-~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 262 LPLPTRIVAHGYLT-VEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred CCCCcEeeeeeeEE-ECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCC
Confidence 55679999999998 5699999999999999999999999999999997 566788876
No 84
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=1.1e-51 Score=520.92 Aligned_cols=360 Identities=26% Similarity=0.389 Sum_probs=276.1
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q psy15223 1602 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 1681 (2492)
Q Consensus 1602 f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~ 1681 (2492)
|+|+.|+|||||.|||||++.++.+|+++||+||+|++|+|+.|+|+||+||+.+|+++ +++|++ ++.++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~---g~~p~~-------~~~~~ 70 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQ---GIDPEE-------FCDKY 70 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHT---TS-HHH-------HHHHH
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHc---CCCHHH-------HHHHH
Confidence 78999999999999999999999999999999999999999999999999999999988 899988 78889
Q ss_pred HHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceEEEE
Q psy15223 1682 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVG 1761 (2492)
Q Consensus 1682 i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~ 1761 (2492)
.+.+++.|+++||++ |++.+|+|+.|.++++++|.+|+++|+||++..+++||+.|+++|+|.+|+-.-
T Consensus 71 ~~~~~~~~~~~~I~~--D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~C--------- 139 (391)
T PF09334_consen 71 SAKFKELLEALNISY--DRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTC--------- 139 (391)
T ss_dssp HHHHHHHHHHTT-----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEE---------
T ss_pred HHHHHHHHHHcCCCC--cceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccc---------
Confidence 999999999999965 678999999999999999999999999999999999999999999999886110
Q ss_pred EeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcC
Q psy15223 1762 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKG 1841 (2492)
Q Consensus 1762 f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~ 1841 (2492)
..++..
T Consensus 140 ----------P~C~~~---------------------------------------------------------------- 145 (391)
T PF09334_consen 140 ----------PYCGSD---------------------------------------------------------------- 145 (391)
T ss_dssp ----------TTT--S----------------------------------------------------------------
T ss_pred ----------cCcCcc----------------------------------------------------------------
Confidence 000000
Q ss_pred ceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCC
Q psy15223 1842 NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDG 1921 (2492)
Q Consensus 1842 ~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G 1921 (2492)
+..|
T Consensus 146 ----------------------------------------------------------------------------~a~g 149 (391)
T PF09334_consen 146 ----------------------------------------------------------------------------KARG 149 (391)
T ss_dssp ----------------------------------------------------------------------------SCTT
T ss_pred ----------------------------------------------------------------------------ccCC
Confidence 0000
Q ss_pred ccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHH
Q psy15223 1922 NFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAIT 2001 (2492)
Q Consensus 1922 ~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~ 2001 (2492)
..++++|. ..+.-+-.-|.|..||.+++++.++|||+++++ +++.+.+
T Consensus 150 ~~Ce~cG~------------------------~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~--------~~~~L~~ 197 (391)
T PF09334_consen 150 DQCENCGR------------------------PLEPEELINPVCKICGSPPEVREEENYFFKLSK--------FRDQLRE 197 (391)
T ss_dssp TEETTTSS------------------------BEECCCSECEEETTTS-B-EEEEEEEEEE-GGG--------GHHHHHH
T ss_pred CcccCCCC------------------------CcccccccCCccccccccCccccceEEEEehHH--------hHHHHHH
Confidence 00000100 000111123789999999999999999999999 8889999
Q ss_pred hhhcce-EecccchhHHHHhhhC-CCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchh
Q psy15223 2002 AINKIK-FFPSWGKDRLKSMILN-RPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIK 2079 (2492)
Q Consensus 2002 ~~~~v~-~~P~~~~~~~~~~l~~-~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~ 2079 (2492)
.+++.. +.|+..++.+.+||+. ++||||||...||+|+|-
T Consensus 198 ~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~-------------------------------------- 239 (391)
T PF09334_consen 198 WLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPG-------------------------------------- 239 (391)
T ss_dssp HHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSSEEETT--------------------------------------
T ss_pred HHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCcceeec--------------------------------------
Confidence 887543 4667778888899995 999999999999999991
Q ss_pred hhcCCCccCceecccccccccccCcchhhhccCCc-------cccCCc-----CceeeecccchhhhhHHHHHHHHHHhc
Q psy15223 2080 EFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-------KKQLIF-----PADLYLEGSDQHRGWFHSSLLTSIILN 2147 (2492)
Q Consensus 2080 ~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~-------~~~~~~-----P~Dl~~~G~D~~r~wf~~~l~~~~~l~ 2147 (2492)
.+..|++||||..+.|++.++... .+..+| +--+++.|+|+++ ||..+++++++.
T Consensus 240 -----------~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~--fH~i~~pa~l~a 306 (391)
T PF09334_consen 240 -----------DPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIR--FHAIYWPAMLLA 306 (391)
T ss_dssp -----------EEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHH--HHHTHHHHHHHH
T ss_pred -----------cCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhH--HHHHHhHHHHhc
Confidence 134689999999999988875432 112234 1238999999997 899999998877
Q ss_pred CCc-cccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHH
Q psy15223 2148 KSA-PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE 2216 (2492)
Q Consensus 2148 ~~~-pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~ 2216 (2492)
... +++++++|||++ .+|+|||||+||+|+|.+++++||+|++||||++ ++..+|.+|+++.+.+..+
T Consensus 307 ~~~~lP~~i~~~~~~~-~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n 376 (391)
T PF09334_consen 307 AGLPLPRRIVVHGFLT-LDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVN 376 (391)
T ss_dssp CTB---SEEEEE--EE-ETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHH
T ss_pred ccCCCCCEEEeeeeEE-ECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 544 348999999988 7999999999999999999999999999999997 6789999999998866443
No 85
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=1.2e-51 Score=520.60 Aligned_cols=360 Identities=27% Similarity=0.406 Sum_probs=276.9
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHH
Q psy15223 452 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 531 (2492)
Q Consensus 452 f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~ 531 (2492)
|+|+.|+|||||.|||||+..++.+|+++||+||+|++|.|+.|+|+||+||+.+|+++ +++|++ ++.++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~---g~~p~~-------~~~~~ 70 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQ---GIDPEE-------FCDKY 70 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHT---TS-HHH-------HHHHH
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHc---CCCHHH-------HHHHH
Confidence 78999999999999999999999999999999999999999999999999999999997 889998 88889
Q ss_pred HHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEEEE
Q psy15223 532 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVG 611 (2492)
Q Consensus 532 i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~yv~ 611 (2492)
.+.+++.|+++||++ |++.+|.|+.|.+.++++|.+|+++|+||++..+++||+.|+++|+|.+|+.. .
T Consensus 71 ~~~~~~~~~~~~I~~--D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~---C------ 139 (391)
T PF09334_consen 71 SAKFKELLEALNISY--DRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGT---C------ 139 (391)
T ss_dssp HHHHHHHHHHTT-----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCE---E------
T ss_pred HHHHHHHHHHcCCCC--cceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeecc---c------
Confidence 999999999999955 67999999999999999999999999999999999999999999999998621 0
Q ss_pred eecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCCcC
Q psy15223 612 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKG 691 (2492)
Q Consensus 612 f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~ 691 (2492)
|. .+
T Consensus 140 --------------------------------------------P~-----------------------------C~--- 143 (391)
T PF09334_consen 140 --------------------------------------------PY-----------------------------CG--- 143 (391)
T ss_dssp --------------------------------------------TT-----------------------------T----
T ss_pred --------------------------------------------cC-----------------------------cC---
Confidence 00 00
Q ss_pred cEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCCCC
Q psy15223 692 NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDG 771 (2492)
Q Consensus 692 ~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~~G 771 (2492)
. ..+.|. .|...|.
T Consensus 144 --------------------~-----------------------------~~a~g~----~Ce~cG~------------- 157 (391)
T PF09334_consen 144 --------------------S-----------------------------DKARGD----QCENCGR------------- 157 (391)
T ss_dssp --------------------------------------------------SSCTTT----EETTTSS-------------
T ss_pred --------------------c-----------------------------cccCCC----cccCCCC-------------
Confidence 0 000000 0000010
Q ss_pred cccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHH
Q psy15223 772 NFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAIT 851 (2492)
Q Consensus 772 ~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~ 851 (2492)
..+ ..+-.-|.|-.||+++++|.++|||+++++ +++.+.+
T Consensus 158 -~~~-------------------------------~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~--------~~~~L~~ 197 (391)
T PF09334_consen 158 -PLE-------------------------------PEELINPVCKICGSPPEVREEENYFFKLSK--------FRDQLRE 197 (391)
T ss_dssp -BEE-------------------------------CCCSECEEETTTS-B-EEEEEEEEEE-GGG--------GHHHHHH
T ss_pred -Ccc-------------------------------cccccCCccccccccCccccceEEEEehHH--------hHHHHHH
Confidence 000 001112789999999999999999999998 8899999
Q ss_pred Hhhcce-EecchhhHHHHHHHhc-CCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccccCch
Q psy15223 852 AINKIK-FFPSWGKDRLKSMILN-RPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIK 929 (2492)
Q Consensus 852 ~i~~v~-~~P~~~~~rl~~~l~~-~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~ 929 (2492)
.+++.. +.|+..++.+.+||++ ++||||||.-.||+|+|-
T Consensus 198 ~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~-------------------------------------- 239 (391)
T PF09334_consen 198 WLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPG-------------------------------------- 239 (391)
T ss_dssp HHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSSEEETT--------------------------------------
T ss_pred HHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCcceeec--------------------------------------
Confidence 987643 4667778888899995 999999999999999991
Q ss_pred hhcCCCccCceecCCccccccccccccchhcccCc-------cccCCc-----CeeeeecccccchhhHHHHHHHHHHhc
Q psy15223 930 EFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-------KKQLIF-----PADLYLEGSDQHRGWFHSSLLTSIILN 997 (2492)
Q Consensus 930 ~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~-------~~~~~~-----p~Dl~~~G~D~~rgwf~s~l~~~~~~~ 997 (2492)
.+..|++||||..+.|++.++... .+..+| +.-+++.|+|+++ ||..+++++++.
T Consensus 240 -----------~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~--fH~i~~pa~l~a 306 (391)
T PF09334_consen 240 -----------DPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIR--FHAIYWPAMLLA 306 (391)
T ss_dssp -----------EEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHH--HHHTHHHHHHHH
T ss_pred -----------cCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhH--HHHHHhHHHHhc
Confidence 134689999999999988876543 113445 2239999999997 999999998877
Q ss_pred CCCC-ceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHH
Q psy15223 998 KSAP-YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE 1066 (2492)
Q Consensus 998 ~~~p-~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~ 1066 (2492)
...| ++++++|||++ .+|+|||||+||+|+|.+++++||+|++||||++ .+..+|.+|+++.+.+..+
T Consensus 307 ~~~~lP~~i~~~~~~~-~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n 376 (391)
T PF09334_consen 307 AGLPLPRRIVVHGFLT-LDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVN 376 (391)
T ss_dssp CTB---SEEEEE--EE-ETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHH
T ss_pred ccCCCCCEEEeeeeEE-ECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 5544 49999999998 7999999999999999999999999999999997 5678999999988866543
No 86
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=1.1e-50 Score=504.62 Aligned_cols=306 Identities=26% Similarity=0.490 Sum_probs=268.5
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy15223 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYE 1680 (2492)
Q Consensus 1601 ~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~ 1680 (2492)
+|+|+.|||||||.|||||+++++++|+++||+||+|++|.|++|||+||+||+.+|+++ +++|.+ ++.+
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~---g~~~~e-------~~~~ 70 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE---GVTPQE-------LCDK 70 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHc---CCCHHH-------HHHH
Confidence 589999999999999999999999999999999999999999999999999999999886 788876 7888
Q ss_pred HHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceEEE
Q psy15223 1681 KIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYV 1760 (2492)
Q Consensus 1681 ~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv 1760 (2492)
+++.+++++++||+. +|..+.|+++.|...++++|.+|+++|++|++..+++|||.|+|+|+
T Consensus 71 ~~~~~~~~l~~LgI~--~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~---------------- 132 (319)
T cd00814 71 YHEIFKDLFKWLNIS--FDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP---------------- 132 (319)
T ss_pred HHHHHHHHHHHcCCc--CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee----------------
Confidence 999999999999994 56788999999999999999999999999999999999999988765
Q ss_pred EEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCc
Q psy15223 1761 GFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFK 1840 (2492)
Q Consensus 1761 ~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~ 1840 (2492)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCC
Q psy15223 1841 GNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDD 1920 (2492)
Q Consensus 1841 ~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~ 1920 (2492)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHH
Q psy15223 1921 GNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAI 2000 (2492)
Q Consensus 1921 G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~ 2000 (2492)
+++.++|||+++++ +++.++
T Consensus 133 ----------------------------------------------------e~~~~~~~ff~l~~--------~~~~l~ 152 (319)
T cd00814 133 ----------------------------------------------------EWREEEHYFFRLSK--------FQDRLL 152 (319)
T ss_pred ----------------------------------------------------EEEeeeeEEEEhHH--------HHHHHH
Confidence 12334689999988 889999
Q ss_pred Hhhhcce--EecccchhHHHHhhhC-CCCccccccc-CCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccccccc
Q psy15223 2001 TAINKIK--FFPSWGKDRLKSMILN-RPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNL 2076 (2492)
Q Consensus 2001 ~~~~~v~--~~P~~~~~~~~~~l~~-~~DW~ISRqr-~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~ 2076 (2492)
+.+++.. +.|+..++.+.+||++ ++|||||||. .||+|+|..
T Consensus 153 ~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~---------------------------------- 198 (319)
T cd00814 153 EWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLD---------------------------------- 198 (319)
T ss_pred HHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCC----------------------------------
Confidence 8887543 7899999999999996 9999999999 999999930
Q ss_pred chhhhcCCCccCceecccccccccccCcchhhhccCCcc-------ccCCcCceeeecccchhhhhHHHHHHHHHHhc-C
Q psy15223 2077 DIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK-------KQLIFPADLYLEGSDQHRGWFHSSLLTSIILN-K 2148 (2492)
Q Consensus 2077 ~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~-------~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~-~ 2148 (2492)
++++++||||+.+.|++......+ +...+|.|+++.|+|+++ ||..+++++++. +
T Consensus 199 ---------------~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~--fh~~~~pa~l~~~~ 261 (319)
T cd00814 199 ---------------PGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIR--FHAIYWPAMLLGAG 261 (319)
T ss_pred ---------------CCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhh--hhHHHHHHHHHhCC
Confidence 236899999999999887643321 123479999999999998 667777766553 4
Q ss_pred CccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccc
Q psy15223 2149 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 2206 (2492)
Q Consensus 2149 ~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~f 2206 (2492)
..|++.+++|||++ .+|+|||||+||+|+|.++++.||+|++|||+++ .+..+|.+|
T Consensus 262 ~~~~~~~~~~~~~~-~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 262 LPLPTRIVAHGYLT-VEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred CCCCcEeeeeeeEE-ECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCC
Confidence 56689999999998 5699999999999999999999999999999996 577888876
No 87
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.2e-50 Score=502.22 Aligned_cols=295 Identities=27% Similarity=0.509 Sum_probs=256.1
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy15223 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYE 1680 (2492)
Q Consensus 1601 ~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~ 1680 (2492)
||+|++|||||||.+||||+++++++|+++||+||+|++|.|++|+|+||+||+.+|++. ++++ ++++++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~---g~~~-------~e~~~~ 70 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI---GRDP-------EDWTEY 70 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHc---CCCH-------HHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999876 5654 458999
Q ss_pred HHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceEEE
Q psy15223 1681 KIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYV 1760 (2492)
Q Consensus 1681 ~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv 1760 (2492)
+.+.+++++++||+++||++.+.|++|.|.+.++++|.+|+++|+||++..+|+|| +
T Consensus 71 ~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~-----------~------------ 127 (314)
T cd00812 71 NIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC-----------K------------ 127 (314)
T ss_pred HHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee-----------C------------
Confidence 99999999999999999999999999999999999999999999999999999999 0
Q ss_pred EEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCc
Q psy15223 1761 GFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFK 1840 (2492)
Q Consensus 1761 ~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~ 1840 (2492)
T Consensus 128 -------------------------------------------------------------------------------- 127 (314)
T cd00812 128 -------------------------------------------------------------------------------- 127 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCC
Q psy15223 1841 GNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDD 1920 (2492)
Q Consensus 1841 ~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~ 1920 (2492)
T Consensus 128 -------------------------------------------------------------------------------- 127 (314)
T cd00812 128 -------------------------------------------------------------------------------- 127 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHH
Q psy15223 1921 GNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAI 2000 (2492)
Q Consensus 1921 G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~ 2000 (2492)
.++|||+++++ ..+++++.
T Consensus 128 -------------------------------------------------------~~~~~f~~l~~------~~~~~~l~ 146 (314)
T cd00812 128 -------------------------------------------------------LLDQWFLKYSE------TEWKEKLL 146 (314)
T ss_pred -------------------------------------------------------ccceEEEEcCc------HHHHHHHH
Confidence 02479999943 12999999
Q ss_pred HhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhh
Q psy15223 2001 TAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKE 2080 (2492)
Q Consensus 2001 ~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~ 2080 (2492)
+.++++++.|+..++.+.+||+ ||||+.||+|+|+
T Consensus 147 ~~l~~~~~~p~~~~~~~~~~l~------isR~~~wGipvP~--------------------------------------- 181 (314)
T cd00812 147 KDLEKLDGWPEEVRAMQENWIG------CSRQRYWGTPIPW--------------------------------------- 181 (314)
T ss_pred HHHHhcCcCCHHHHHHHHHHhe------eeeecCCcCCcCc---------------------------------------
Confidence 9999888899999999999996 9999999999994
Q ss_pred hcCCCccCceecccccccccccCcchhhhccC--------------CccccCCcCceeeecccchhhhh-HHHHHHHHHH
Q psy15223 2081 FLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG--------------SHKKQLIFPADLYLEGSDQHRGW-FHSSLLTSII 2145 (2492)
Q Consensus 2081 ~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~--------------~~~~~~~~P~Dl~~~G~D~~r~w-f~~~l~~~~~ 2145 (2492)
++++||||||.+++..++.. ..++++|||+|+++.|+||+++| ++...+.+++
T Consensus 182 ------------~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l 249 (314)
T cd00812 182 ------------TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKAL 249 (314)
T ss_pred ------------ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHH
Confidence 24789999999865544421 11235789999999999999988 4444455555
Q ss_pred hcCC----ccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccCCCCcccccH
Q psy15223 2146 LNKS----APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISN 2208 (2492)
Q Consensus 2146 l~~~----~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~~~~d~~fs~ 2208 (2492)
.... .+++++++||||+ .+|+|||||+||+|+|+|++++||+|++|||+++... .|.+|++
T Consensus 250 ~~~g~~~~~~~~~~~~~g~v~-~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~~~f~~ 314 (314)
T cd00812 250 FDEGLVTDEPPKGLIVQGMVL-LEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP-PDADFDW 314 (314)
T ss_pred cCcccccccCcHHheecceEe-cCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-cCCCCCC
Confidence 4333 5788999999998 6899999999999999999999999999999997544 8888763
No 88
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.6e-50 Score=501.07 Aligned_cols=294 Identities=27% Similarity=0.520 Sum_probs=255.3
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHH
Q psy15223 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYE 530 (2492)
Q Consensus 451 ~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~ 530 (2492)
||+|++|||||||.+||||+++++++|+++||+||+|++|.|++|+|+||+||+.+|++. +.++ ++++++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~---g~~~-------~e~~~~ 70 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI---GRDP-------EDWTEY 70 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHc---CCCH-------HHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999875 5554 559999
Q ss_pred HHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEEE
Q psy15223 531 KIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYV 610 (2492)
Q Consensus 531 ~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~yv 610 (2492)
+.+.+++++++||+++||++++.|++|.|.+.++++|.+|+++|+||++..+|+||
T Consensus 71 ~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~------------------------ 126 (314)
T cd00812 71 NIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC------------------------ 126 (314)
T ss_pred HHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee------------------------
Confidence 99999999999999999999999999999999999999999999999999999988
Q ss_pred EeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCCc
Q psy15223 611 GFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFK 690 (2492)
Q Consensus 611 ~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~ 690 (2492)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCCC
Q psy15223 691 GNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDD 770 (2492)
Q Consensus 691 ~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~~ 770 (2492)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHH
Q psy15223 771 GNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAI 850 (2492)
Q Consensus 771 G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~ 850 (2492)
+.++|||+++++ ..+++++.
T Consensus 127 ------------------------------------------------------~~~~~~f~~l~~------~~~~~~l~ 146 (314)
T cd00812 127 ------------------------------------------------------KLLDQWFLKYSE------TEWKEKLL 146 (314)
T ss_pred ------------------------------------------------------CccceEEEEcCc------HHHHHHHH
Confidence 012489999943 22999999
Q ss_pred HHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccccCchh
Q psy15223 851 TAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKE 930 (2492)
Q Consensus 851 ~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~ 930 (2492)
+.+++..+.|+..++.+.+||+ ||||+.||+|+|+
T Consensus 147 ~~l~~~~~~p~~~~~~~~~~l~------isR~~~wGipvP~--------------------------------------- 181 (314)
T cd00812 147 KDLEKLDGWPEEVRAMQENWIG------CSRQRYWGTPIPW--------------------------------------- 181 (314)
T ss_pred HHHHhcCcCCHHHHHHHHHHhe------eeeecCCcCCcCc---------------------------------------
Confidence 9999888899999999999996 9999999999994
Q ss_pred hcCCCccCceecCCccccccccccccchhccc--------------CccccCCcCeeeeecccccchhh-HHHHHHHHHH
Q psy15223 931 FLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG--------------SHKKQLIFPADLYLEGSDQHRGW-FHSSLLTSII 995 (2492)
Q Consensus 931 ~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~--------------~~~~~~~~p~Dl~~~G~D~~rgw-f~s~l~~~~~ 995 (2492)
++++||||||.+++..++.. ..++.+|||+|+|+.|+||+++| ++...+.+++
T Consensus 182 ------------~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l 249 (314)
T cd00812 182 ------------TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKAL 249 (314)
T ss_pred ------------ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHH
Confidence 24789999999754333311 11236789999999999999988 4444455555
Q ss_pred hcCC----CCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcccccccC
Q psy15223 996 LNKS----APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSIS 1057 (2492)
Q Consensus 996 ~~~~----~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~~d~~fs 1057 (2492)
.... .+++++++||||+ .+|+|||||+||+|+|+|++++||+|++|||+++... .|.+|+
T Consensus 250 ~~~g~~~~~~~~~~~~~g~v~-~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~~~f~ 313 (314)
T cd00812 250 FDEGLVTDEPPKGLIVQGMVL-LEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP-PDADFD 313 (314)
T ss_pred cCcccccccCcHHheecceEe-cCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-cCCCCC
Confidence 4433 5778999999998 6899999999999999999999999999999997655 888776
No 89
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=6.7e-49 Score=458.74 Aligned_cols=239 Identities=39% Similarity=0.630 Sum_probs=212.8
Q ss_pred cccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCcee
Q psy15223 202 IKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYTI 279 (2492)
Q Consensus 202 m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~i 279 (2492)
|+|+|+|++.++..+..+.|+++++||+ +|||+++||.|.++||+|+.|.|+|++++++ ..+.+++....+++++..|
T Consensus 1 ~~~~~~~v~~~~~~~~~~~l~~~~~~Hl~~VlRl~~gd~l~l~~g~g~~~~a~i~~~~kk~~~~~i~~~~~~~~e~~~~i 80 (246)
T COG1385 1 MRMPRLFVDEELAEGATVILTGDEAHHLKRVLRLKEGDELRLFDGSGGEFLAEITKIGKKEALLKIVEQLEPNPELPLKI 80 (246)
T ss_pred CCceeEeecccccCCCEEEECchhhhhHHheeecCCCCEEEEEeCCCcEEEEEEeecCCCceEEEEEeecccCCCCCceE
Confidence 8999999999999999999999999999 8999999999999999999999999998665 6778888888888999999
Q ss_pred eEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHH
Q psy15223 280 TLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWL 359 (2492)
Q Consensus 280 ~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l 359 (2492)
+|+|+++|+++||++|||||||||+.|+|+.|+||+++++.++.. |++||++|++||||||||+.+|+|..+.+|.+++
T Consensus 81 ~l~~~i~kg~k~d~iiqkatELGv~~i~p~~ter~~~k~~~~~~~-kler~~ki~ieAaEQs~R~~vP~I~~~~~~~~~l 159 (246)
T COG1385 81 TLAQAIPKGDKLELIIQKATELGVSKIIPLITERSVVKLDGKKAA-KLERWQKIAIEAAEQSGRNVVPEIKPPESLKELL 159 (246)
T ss_pred EEEEEcCccHHHHHHHHHHHHhCcceEEEEeeeeeEEeccccchh-HHHHHHHHHHHHHHhcCCCcCCeeechhhHHHHH
Confidence 999999999999999999999999999999999999999988888 9999999999999999999999999999999999
Q ss_pred hhccccc--EEEeccCCccccccccc--CCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheee
Q psy15223 360 ISKISCA--RILLSPRGRKKLSCWAN--NQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAI 435 (2492)
Q Consensus 360 ~~~~~~~--~~l~~~~~~~~~~~~~~--~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~ 435 (2492)
+...+.+ .+.+++........... ....+++.++||||||||++|++.+.++||.+|+|||||||||||+++|++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iiIGPEGGfs~~Ei~~l~~~g~~~v~LGprILRtETAal~ala~ 239 (246)
T COG1385 160 KEIDDEDALKLIYEEKAKEGLLALPLLEALPEGKVLLIIGPEGGFSEDEIELLREAGFTPVSLGPRILRTETAALAALAA 239 (246)
T ss_pred HhcccchhhhheeccccccccccchhhhcccCCcEEEEECCCCCCCHHHHHHHHHCCCeEeccCCceehhhHHHHHHHHH
Confidence 8765333 44455544433222211 1234689999999999999999999999999999999999999999999998
Q ss_pred eccccc
Q psy15223 436 LNGVWG 441 (2492)
Q Consensus 436 v~~ly~ 441 (2492)
++..++
T Consensus 240 i~~~~~ 245 (246)
T COG1385 240 LQALLG 245 (246)
T ss_pred HHHHhc
Confidence 886654
No 90
>TIGR00046 RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA.
Probab=100.00 E-value=7.8e-46 Score=439.79 Aligned_cols=236 Identities=35% Similarity=0.503 Sum_probs=197.9
Q ss_pred ccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCceee
Q psy15223 203 KMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYTIT 280 (2492)
Q Consensus 203 ~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~i~ 280 (2492)
+|++||.+.... +..+.|+++++||+ +|||+++||.|.|+||+|+.|.|+|++++++ ..+++.+....+.+++++|+
T Consensus 1 ~m~~~~~~~~~~-~~~i~l~~~~~~Hl~~VlR~~~Gd~v~v~~g~g~~~~a~i~~~~~~~~~~~i~~~~~~~~~~~~~i~ 79 (240)
T TIGR00046 1 RMRIVYHPEQLE-EATISLTEEEAHHLVRVLRLKKGDKLKLLDGDGFIYHCEIKKISKKFVKCELLEGESEKRELPLKIH 79 (240)
T ss_pred CCcEEEeCcccc-CCeEEEChHHHhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEEcCCeEEEEEEecccCCCCCCcEEE
Confidence 377888775544 44599999999999 9999999999999999999999999998765 45666655555556677899
Q ss_pred EEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHHh
Q psy15223 281 LVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLI 360 (2492)
Q Consensus 281 L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l~ 360 (2492)
|+||+||+++|||+|||||||||++|+|+.|+||+++++.+ ..+|.+||++|++||||||+|+++|+|.++.+|+++++
T Consensus 80 l~~al~K~~~~d~il~katELGv~~i~p~~s~rs~~~~~~~-~~~k~~rw~~i~~eA~~Q~~r~~lP~i~~~~~l~~~l~ 158 (240)
T TIGR00046 80 LAIVLIKGKKMEFIIRKLTELGVSKIIPFNAERSVVKLDIE-AIKKLERWQKIAIEAAEQSGRNIVPEIKPPKNLKEKCA 158 (240)
T ss_pred EEEeecCCccHHHHHHHHHHcCCCEEEEEEeccceeccCch-HHHHHHHHHHHHHHHHHhcCCCCCCEECCcCCHHHHHh
Confidence 99999999999999999999999999999999999998766 67899999999999999999999999999999999987
Q ss_pred hcccccE-EEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheeeeccc
Q psy15223 361 SKISCAR-ILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGV 439 (2492)
Q Consensus 361 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~v~~l 439 (2492)
...+... +++++++......+. . ..+++.++||||||||++|++.+.++||.+||||+||||+|||+++|+++++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~v~~~IGPEGGfs~~Ei~~~~~~gf~~vsLG~rILR~ETA~i~als~~~~~ 236 (240)
T TIGR00046 159 EAYEEALKLNFHPEASPLSANLP-I-PAGNIVIIIGPEGGFSEKEIQLLKEKGFTPVLLGPRILRTETAPLYALSILQAL 236 (240)
T ss_pred hCcCCCeEEEECCcccchhhhhc-c-CCCcEEEEECCCCCCCHHHHHHHHHCCCEEEccCCcchhhccHHHHHHHHHHHH
Confidence 5433233 444444332112221 1 234699999999999999999999999999999999999999999999988866
Q ss_pred ccc
Q psy15223 440 WGE 442 (2492)
Q Consensus 440 y~~ 442 (2492)
++.
T Consensus 237 ~~~ 239 (240)
T TIGR00046 237 LED 239 (240)
T ss_pred hcC
Confidence 543
No 91
>PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules. The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A ....
Probab=100.00 E-value=5e-45 Score=430.22 Aligned_cols=220 Identities=39% Similarity=0.578 Sum_probs=170.4
Q ss_pred EEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCceeeEEEecCCchhHHHHHH
Q psy15223 219 LYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYTITLVQALPENRKFDLIIE 296 (2492)
Q Consensus 219 i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~i~L~~al~K~~~~d~ii~ 296 (2492)
+.|+++++||+ +|||+++||.|.|+||+|+.|.|+|++++++ ..+++.+....+.+++.+++|+||+||+++|||+||
T Consensus 1 V~L~~~~~~Hl~~VlR~k~Gd~i~v~dg~g~~~~a~i~~i~~~~~~~~i~~~~~~~~~~~~~i~L~~al~K~~~~d~il~ 80 (225)
T PF04452_consen 1 VELDGEEAHHLVKVLRLKEGDSIEVFDGDGGEYRAEITEISKKSATLRILEELEIPPEPPPEITLAQALPKGDRMDWILQ 80 (225)
T ss_dssp EEEEHHHHHHHHTTST--TT-EEEEEESSSEEEEEEEEEEESSEEEEEEEEEEE---SSSSEEEEEEE--STTHHHHHHH
T ss_pred CEecHHHHHHHHHhcCCCCCCEEEEEECCCCEEEEEEEECcCcEEEEEEeeeccCCCCCcceEEEEEEEEcCccHHHHHH
Confidence 57899999999 9999999999999999999999999999776 557788777787887878999999999999999999
Q ss_pred HHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHHhhcccccEEEeccCCcc
Q psy15223 297 KSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRK 376 (2492)
Q Consensus 297 katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l~~~~~~~~~l~~~~~~~ 376 (2492)
|||||||++|+|+.|+||+++++.++..+|.+||++|++||||||+|+++|+|.++.+|++++........+++++++..
T Consensus 81 katELGv~~i~p~~s~rsv~k~~~~~~~~k~~R~~~i~~eA~kQs~r~~~P~i~~~~~l~~~l~~~~~~~~~~~~~~~~~ 160 (225)
T PF04452_consen 81 KATELGVSRIIPVISERSVVKSDGKKSDKKLERWQRIAIEAAKQSGRTRLPEIEPPISLKELLEDIPDEDLLILDEDEEP 160 (225)
T ss_dssp HHHHTT-SEEEEEE-TTSSS---HHHHHHHHHHHHHHHHHHHHHHT-SS--EEEEEEEHHHHHHHSSECSEEEE-TTTTC
T ss_pred HHHhcCCCEEEEEEeeeeeeeccchhhHHHHHHHHHHHHHHHHhcCCCccceeeccccHHHHhhccccCCEEEEcccccc
Confidence 99999999999999999999988888899999999999999999999999999999999999987666556777776554
Q ss_pred cccccccCCCC---CceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheeeecc
Q psy15223 377 KLSCWANNQSP---QEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNG 438 (2492)
Q Consensus 377 ~~~~~~~~~~~---~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~v~~ 438 (2492)
.+..+...... .++.++||||||||++|++.+.++||++||||+||||+|||++++++++++
T Consensus 161 ~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~~~~~g~~~vsLG~~ILR~ETAai~als~l~y 225 (225)
T PF04452_consen 161 SLSSLSEILNSEKSFSIAIIIGPEGGFSEEEIEFLKEAGFQPVSLGPRILRTETAAIAALSILQY 225 (225)
T ss_dssp BGGGCSHTTSCHHC-EEEEEE--TT---HHHHHHHHHCTEEEEB-SSS---HHHHHHHHHHHHHH
T ss_pred cccchhhhhhcccCCcEEEEECCCCCCCHHHHHHHHHCCCEEEEcCCCEEehHHHHHHHHHHhhC
Confidence 33322221111 189999999999999999999999999999999999999999999998763
No 92
>PRK11713 16S ribosomal RNA methyltransferase RsmE; Provisional
Probab=100.00 E-value=7.5e-44 Score=421.81 Aligned_cols=229 Identities=42% Similarity=0.651 Sum_probs=195.1
Q ss_pred cccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCceeeE
Q psy15223 204 MLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYTITL 281 (2492)
Q Consensus 204 M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~i~L 281 (2492)
|+|||++ ...+..+.|+++++||+ +|||+++||.|.|+||+|+.|.|+|+.++++ ..+.+.+....+.+++++++|
T Consensus 1 m~~~f~~--~~~~~~~~l~~~~~~Hl~~VlR~~~Gd~i~v~~g~g~~~~~~i~~i~~~~~~~~i~~~~~~~~~~~~~l~l 78 (234)
T PRK11713 1 MPRLFVL--LAAGETLILDGEEAHHLVRVLRLKEGDELRLFDGDGGEYLAEITEIGKKEVELEILEKLELEPEPPLRLTL 78 (234)
T ss_pred CcEEEEe--cCCCCEEEEChHHHhHHHhhccCCCCCEEEEEeCCCCEEEEEEEEecCcEEEEEEEecccCCCCCCCeEEE
Confidence 7899998 55677899999999999 9999999999999999999999999998765 456666655555677789999
Q ss_pred EEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHHhh
Q psy15223 282 VQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLIS 361 (2492)
Q Consensus 282 ~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l~~ 361 (2492)
++|+||+++|||+|||||||||++|+|+.|+||+.++..++..+|.+||++|+++|||||+|+++|+|.++.+|.++++.
T Consensus 79 ~~al~k~~~~e~il~k~tELGV~~i~p~~sers~~~~~~~~~~~k~~r~~~i~~~A~~Qs~r~~~P~i~~~~~~~~~l~~ 158 (234)
T PRK11713 79 AQALPKGDRLELILQKATELGVSAIIPLISERSVVKLDGERADKKLERWQKIAIEAAEQSGRTRIPEVRPPISLKEFLEE 158 (234)
T ss_pred EEeecCCccHHHHHHHHHHhCcCeEEEEEeccceecccchhhHHHHHHHHHHHHHHHHhcCCCCCCEEcCcCCHHHHHhh
Confidence 99999999999999999999999999999999999987777778999999999999999999999999999999999875
Q ss_pred cccccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheeeeccccc
Q psy15223 362 KISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGVWG 441 (2492)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~v~~ly~ 441 (2492)
....+. . .... ..+. ....+++.++||||||||++|++.|.++||.+||||+||||+|||+++++++++..++
T Consensus 159 ~~~~~~---~-~~~~--~~l~-~~~~~~i~viIGPEGGfs~~Ei~~l~~~g~~~vsLG~~ILR~ETA~i~als~~~~~~~ 231 (234)
T PRK11713 159 LLPADL---K-AGLK--LVLH-PEAGGKVLLLIGPEGGFSPEEIELLREAGFTPVSLGPRILRTETAALAALAALQALLG 231 (234)
T ss_pred cccccc---c-hhhh--hhcC-cCCCCeEEEEECCCCCCCHHHHHHHHHCCCEEeccCCCchhhhhHHHHHHHHHHHHhc
Confidence 432211 1 1101 0011 1122469999999999999999999999999999999999999999999998876544
No 93
>KOG1247|consensus
Probab=100.00 E-value=5.5e-38 Score=362.28 Aligned_cols=493 Identities=19% Similarity=0.268 Sum_probs=372.6
Q ss_pred ccCCCCcEEEEcCCCCCCCcccchHhhh-hHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHH
Q psy15223 445 ASINRPKFILHDGPPYANGDIHIGHAVN-KILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNK 523 (2492)
Q Consensus 445 ~~~~~~~f~l~dgPPyanG~lHiGHa~n-~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~ 523 (2492)
+..++..-+++..-||+|..+|+|+... +..+|+++||.+.+|++.+|+.|+|..|..+|.+|.+. +++|.+
T Consensus 9 p~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkalee---g~tP~e---- 81 (567)
T KOG1247|consen 9 PAPNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEE---GLTPQE---- 81 (567)
T ss_pred cCCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHc---cCCHHH----
Confidence 3445567789999999999999999886 66699999999999999999999999999999999887 899999
Q ss_pred HHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccce
Q psy15223 524 ARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKK 603 (2492)
Q Consensus 524 ~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~ 603 (2492)
.++++....+....=++| |+|..-+|+.+..-...|.+|.+|+++|++-...-.+.||..|++.||+..|+=+
T Consensus 82 ---lcdKyh~ihk~vy~Wf~I--dfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~-- 154 (567)
T KOG1247|consen 82 ---LCDKYHGIHKVVYDWFKI--DFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGK-- 154 (567)
T ss_pred ---HHHhcchhHHHHHHhhcc--cccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhcc--
Confidence 556677788888877888 6677778999999999999999999999999999999999999999999887610
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
.
T Consensus 155 --------c----------------------------------------------------------------------- 155 (567)
T KOG1247|consen 155 --------C----------------------------------------------------------------------- 155 (567)
T ss_pred --------C-----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCc
Q psy15223 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 763 (2492)
Q Consensus 684 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~ 763 (2492)
|+. |-+|-
T Consensus 156 --------------------------p~C---------------------------------~yd~A------------- 163 (567)
T KOG1247|consen 156 --------------------------PFC---------------------------------GYDDA------------- 163 (567)
T ss_pred --------------------------CCC---------------------------------CCccc-------------
Confidence 000 00000
Q ss_pred ccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhH
Q psy15223 764 INPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKK 843 (2492)
Q Consensus 764 ~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~ 843 (2492)
.|-..+ ..|.++.. .+..-|.|--|..--+++.+.+-|+++++
T Consensus 164 ------RGDqcd----------------------~cG~l~N~--~el~~pkc~ic~~~p~~~~t~h~Fl~L~k------- 206 (567)
T KOG1247|consen 164 ------RGDQCD----------------------KCGKLVNA--AELKIPKCKICQAGPVVRQTQHLFLSLDK------- 206 (567)
T ss_pred ------cchhhh----------------------hhhhhcCH--HHhcCcchheeccCCeeeeeeEEEEEhHH-------
Confidence 000000 01111110 01112567777777778999999999999
Q ss_pred HHHHHHHHHhhcceE---ecchhhHHHHHHHh-cCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcC
Q psy15223 844 SLRESAITAINKIKF---FPSWGKDRLKSMIL-NRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 919 (2492)
Q Consensus 844 ~~~~~~~~~i~~v~~---~P~~~~~rl~~~l~-~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g 919 (2492)
++.++-+.+++.-. ...++++-.++||. ++...||||...||+|+|.-
T Consensus 207 -l~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPle--------------------------- 258 (567)
T KOG1247|consen 207 -LEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPLE--------------------------- 258 (567)
T ss_pred -hHHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcChh---------------------------
Confidence 88888777765321 23456778899999 79999999999999999950
Q ss_pred CccccccCchhhcCCCccCceecCCccccccccccccchhcccC-ccccCCcC----eee-eecccccchhhHHHHHHHH
Q psy15223 920 IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGS-HKKQLIFP----ADL-YLEGSDQHRGWFHSSLLTS 993 (2492)
Q Consensus 920 ~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~-~~~~~~~p----~Dl-~~~G~D~~rgwf~s~l~~~ 993 (2492)
.-...|++||||+-+.+.+.+..- .+++.||- +++ .+.|+|.+. ||+.++++
T Consensus 259 --------------------~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVp--FHtviFP~ 316 (567)
T KOG1247|consen 259 --------------------KFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVP--FHTVIFPC 316 (567)
T ss_pred --------------------hhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCc--ceeeecch
Confidence 012468999999999998877432 23356662 343 489999998 89999999
Q ss_pred HHhcCCCCc---eEEEEeeEEEcCCCccccccCCCccCcchhhh-hcChhhHHHHhhcc-CcccccccCHHHHHHH--HH
Q psy15223 994 IILNKSAPY---KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN-LFGAEILRLWVAST-DYSKDLSISNEILNRV--VE 1066 (2492)
Q Consensus 994 ~~~~~~~p~---k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~-~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~--~~ 1066 (2492)
..+.....| +++.+.-. ++-+..|+|||+|..|-.+++-+ ..++|+.||||++. +.++|..||++.+... ++
T Consensus 317 s~lgt~en~t~v~~l~aTeY-LnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nse 395 (567)
T KOG1247|consen 317 SQLGTEENYTVVHHLSATEY-LNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSE 395 (567)
T ss_pred hhhcCCCCchhheeechhhh-hccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHH
Confidence 999877766 33433333 45778899999999999988876 48999999999985 4567999999987543 46
Q ss_pred HHHHHHHHHHHHhhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHH
Q psy15223 1067 TYRRIRNTLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLD 1145 (2492)
Q Consensus 1067 ~~~kl~n~~rf~l~~l~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~ 1145 (2492)
.++.|-|++..++..+.. |+. .++...+..-|+-++..++++..+..++||.-..+++++.+|+.. ...|.|++
T Consensus 396 Ll~NLGNFvNR~l~fv~~~~~g---~Vp~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is--~~GNqylQ 470 (567)
T KOG1247|consen 396 LLNNLGNFVNRVLKFVAAKYNG---VVPEMELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEIS--RRGNQYLQ 470 (567)
T ss_pred HHHHHHHHHHHHHHHHHHhhCC---cccceeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHh
Confidence 777777776655543321 111 122224444588899999999999999999999999999999998 45999999
Q ss_pred hhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1146 ILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1146 ~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
..++. .+...+..+...+..+-..++..+..+|+|+||.++.+|..+++-
T Consensus 471 ~~~~~-k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnl 520 (567)
T KOG1247|consen 471 ENTDN-KLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNL 520 (567)
T ss_pred ccccc-chhhhcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCC
Confidence 87632 222222223334455667788889999999999999999998864
No 94
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.2e-36 Score=394.05 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=143.0
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccC
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 2199 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~ 2199 (2492)
-|.|+|.+|.|++++|+.++++++.++++ .||+++++|+.+++.+|+|||||+||+|+|.|++++||+|++|||+++++
T Consensus 219 ~~~Dih~gG~DlifpHh~neiaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~ 297 (463)
T PRK00260 219 ETFDIHGGGADLIFPHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAH 297 (463)
T ss_pred CCcceecCccccCCCchHhHHHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCC
Confidence 47899999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 2278 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a~ 2278 (2492)
++++++|+++.+.++.+.+++++|+++++.. ...|+|++++++.+.+.+.++|+ +|++++|+
T Consensus 298 ~~~~~~fs~~~l~~a~~~~~rl~~~~~~~~~-----------------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al 360 (463)
T PRK00260 298 YRSPLNFSEEALEQAKKALERLYNALAETAL-----------------GEDDEALLAELEEFKERFIEAMDDDFNTPEAL 360 (463)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHhhh-----------------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 9999999999999999999999999998741 13567889999999999999995 99999999
Q ss_pred HHHHHHHHhhhhhhHHH
Q psy15223 2279 SKLQIYCSEDLGSFYLD 2295 (2492)
Q Consensus 2279 ~~l~~f~~~~ls~~Yle 2295 (2492)
..|++|+. + .|.|++
T Consensus 361 ~~l~~lv~-~-~n~~~~ 375 (463)
T PRK00260 361 AVLFELAR-E-INRALE 375 (463)
T ss_pred HHHHHHHH-H-HHHHhh
Confidence 99999983 3 466664
No 95
>KOG1247|consensus
Probab=100.00 E-value=1.3e-37 Score=359.14 Aligned_cols=488 Identities=19% Similarity=0.255 Sum_probs=370.3
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhh-hHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHH
Q psy15223 1597 INRPKFILHDGPPYANGDIHIGHAVN-KILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR 1675 (2492)
Q Consensus 1597 ~~~~~f~i~~~pPy~nG~lHlGH~~~-~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~ 1675 (2492)
.++..-+|+..-||+|..+|+|+..+ ...+||++||.+.+|++.+|+.|+|..|..+|.+|.+. +.+|.++
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkalee---g~tP~el----- 82 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEE---GLTPQEL----- 82 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHc---cCCHHHH-----
Confidence 35567889999999999999999887 55699999999999999999999999999999999877 8999984
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeec
Q psy15223 1676 ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYD 1755 (2492)
Q Consensus 1676 ~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~ 1755 (2492)
++++....+....-++| |+|..=+|+.+..-+.+|.+|.+|+++|+.....-.+.||..|++.|||..|+=+
T Consensus 83 --cdKyh~ihk~vy~Wf~I--dfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~---- 154 (567)
T KOG1247|consen 83 --CDKYHGIHKVVYDWFKI--DFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGK---- 154 (567)
T ss_pred --HHhcchhHHHHHHhhcc--cccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhcc----
Confidence 55566677777778888 5566778999999999999999999999999999999999999999999887610
Q ss_pred ceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHH
Q psy15223 1756 FSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLK 1835 (2492)
Q Consensus 1756 ~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~ 1835 (2492)
+
T Consensus 155 ------------------c------------------------------------------------------------- 155 (567)
T KOG1247|consen 155 ------------------C------------------------------------------------------------- 155 (567)
T ss_pred ------------------C-------------------------------------------------------------
Confidence 0
Q ss_pred HcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCccc
Q psy15223 1836 KFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIIN 1915 (2492)
Q Consensus 1836 ~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~ 1915 (2492)
|+. |-+|
T Consensus 156 ------------------------p~C---------------------------------~yd~---------------- 162 (567)
T KOG1247|consen 156 ------------------------PFC---------------------------------GYDD---------------- 162 (567)
T ss_pred ------------------------CCC---------------------------------CCcc----------------
Confidence 000 0000
Q ss_pred ccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHH
Q psy15223 1916 PVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSL 1995 (2492)
Q Consensus 1916 ~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~ 1995 (2492)
..|..++.+|. ++. ..+..-|.|.-|..-.+++.+.+-|+++++ +
T Consensus 163 ---ARGDqcd~cG~----------------------l~N--~~el~~pkc~ic~~~p~~~~t~h~Fl~L~k--------l 207 (567)
T KOG1247|consen 163 ---ARGDQCDKCGK----------------------LVN--AAELKIPKCKICQAGPVVRQTQHLFLSLDK--------L 207 (567)
T ss_pred ---ccchhhhhhhh----------------------hcC--HHHhcCcchheeccCCeeeeeeEEEEEhHH--------h
Confidence 00111111110 000 011123667778887889999999999999 8
Q ss_pred HHHHHHhhhcce---EecccchhHHHHhhh-CCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcc
Q psy15223 1996 RESAITAINKIK---FFPSWGKDRLKSMIL-NRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 2071 (2492)
Q Consensus 1996 k~~~~~~~~~v~---~~P~~~~~~~~~~l~-~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 2071 (2492)
+.++-+++++-- -....+++-.+.||. +++..||+|..-||+|+|.-
T Consensus 208 ~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPle----------------------------- 258 (567)
T KOG1247|consen 208 EPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPLE----------------------------- 258 (567)
T ss_pred HHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcChh-----------------------------
Confidence 888888876422 134456778899999 79999999999999999950
Q ss_pred cccccchhhhcCCCccCceecccccccccccCcchhhhccCC-ccccCCc--C--cee-eecccchhhhhHHHHHHHHHH
Q psy15223 2072 IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGS-HKKQLIF--P--ADL-YLEGSDQHRGWFHSSLLTSII 2145 (2492)
Q Consensus 2072 ~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~-~~~~~~~--P--~Dl-~~~G~D~~r~wf~~~l~~~~~ 2145 (2492)
+-+..|++||||+-+.|++....- .+++.|| | +++ .+.|+|.+. ||+.++++..
T Consensus 259 ------------------~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVp--FHtviFP~s~ 318 (567)
T KOG1247|consen 259 ------------------KFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVP--FHTVIFPCSQ 318 (567)
T ss_pred ------------------hhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCc--ceeeecchhh
Confidence 012469999999999999887432 2234554 3 343 589999998 8999999999
Q ss_pred hcCCcccc---EEEEeeeEEcCCCceeeeccCCccCcchhhh-ccChhHHHHHHhc-cCCCCcccccHHHHHHH--HHHH
Q psy15223 2146 LNKSAPYK---ALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN-LFGAEILRLWVAS-TDYSKDLSISNEILNRV--VETY 2218 (2492)
Q Consensus 2146 l~~~~pfk---~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~-~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~--~~~~ 2218 (2492)
+...+.|. ++.+. -.|+.+..|+|||+|.+|-..++.+ ..++|+.||||++ .|..+|..||++.+... .+.+
T Consensus 319 lgt~en~t~v~~l~aT-eYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl 397 (567)
T KOG1247|consen 319 LGTEENYTVVHHLSAT-EYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELL 397 (567)
T ss_pred hcCCCCchhheeechh-hhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHH
Confidence 98777662 23322 3356788899999999999988877 5899999999997 57789999999987543 4567
Q ss_pred HHHHHHHHHHHh----cCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHH
Q psy15223 2219 RRIRNTLRFLLA----NTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYL 2294 (2492)
Q Consensus 2219 ~kl~n~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yl 2294 (2492)
+.|-|+...++. ...+..| ...+..-|+-+++.++++..+..++||.-..+++++.+|+.. ...|.|+
T Consensus 398 ~NLGNFvNR~l~fv~~~~~g~Vp------~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is--~~GNqyl 469 (567)
T KOG1247|consen 398 NNLGNFVNRVLKFVAAKYNGVVP------EMELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEIS--RRGNQYL 469 (567)
T ss_pred HHHHHHHHHHHHHHHHhhCCccc------ceeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHH
Confidence 777766554443 3333333 223444488999999999999999999999999999999987 4689999
Q ss_pred HhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2295 DILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2295 e~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
+..++ ..+...+.++...+..+...++..+..||+|+||.++.+|...+.-
T Consensus 470 Q~~~~-~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnl 520 (567)
T KOG1247|consen 470 QENTD-NKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNL 520 (567)
T ss_pred hcccc-cchhhhcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCC
Confidence 97763 1222222233333456667788888999999999999999998864
No 96
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.3e-36 Score=389.96 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=142.9
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCc
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY 1050 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~ 1050 (2492)
|.|+|.+|.|++++|+.+.++++.+++| .||.++++|+.+++.+|+|||||+||+|+|.|++++||+|++|||++++++
T Consensus 220 ~~Dih~gG~DlifpHh~neiaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~ 298 (463)
T PRK00260 220 TFDIHGGGADLIFPHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHY 298 (463)
T ss_pred CcceecCccccCCCchHhHHHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCC
Confidence 6899999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHHH
Q psy15223 1051 SKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIVS 1129 (2492)
Q Consensus 1051 ~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~~ 1129 (2492)
+++++|+++.+.++.+.+.+++|+++++.. ...|+|+++++..+.+++.++|+ +|++++|+.
T Consensus 299 ~~~~~fs~~~l~~a~~~~~rl~~~~~~~~~-----------------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~ 361 (463)
T PRK00260 299 RSPLNFSEEALEQAKKALERLYNALAETAL-----------------GEDDEALLAELEEFKERFIEAMDDDFNTPEALA 361 (463)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHhhh-----------------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 999999999999999999999999998741 13568899999999999999995 999999999
Q ss_pred HHHHHHhhhhhhhHHH
Q psy15223 1130 KLQIYCSEDLGSFYLD 1145 (2492)
Q Consensus 1130 ~l~~f~~~~ls~~Yl~ 1145 (2492)
.|++|+. + .+.|++
T Consensus 362 ~l~~lv~-~-~n~~~~ 375 (463)
T PRK00260 362 VLFELAR-E-INRALE 375 (463)
T ss_pred HHHHHHH-H-HHHHhh
Confidence 9999984 3 456654
No 97
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=3.8e-35 Score=343.33 Aligned_cols=165 Identities=39% Similarity=0.604 Sum_probs=144.6
Q ss_pred ccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCC
Q psy15223 1407 RNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIY 1486 (2492)
Q Consensus 1407 r~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~ 1486 (2492)
...++++++++||+++||++|||||||||++|+|+.|+||+++++.+++. |++||++|++||||||+|+.+|+|..+.+
T Consensus 76 ~~~~i~l~~~i~kg~k~d~iiqkatELGv~~i~p~~ter~~~k~~~~~~~-kler~~ki~ieAaEQs~R~~vP~I~~~~~ 154 (246)
T COG1385 76 LPLKITLAQAIPKGDKLELIIQKATELGVSKIIPLITERSVVKLDGKKAA-KLERWQKIAIEAAEQSGRNVVPEIKPPES 154 (246)
T ss_pred CCceEEEEEEcCccHHHHHHHHHHHHhCcceEEEEeeeeeEEeccccchh-HHHHHHHHHHHHHHhcCCCcCCeeechhh
Confidence 45678999999999999999999999999999999999999999998887 99999999999999999999999999999
Q ss_pred hhHHHhccccc--ceEEeccCCcccccccc--cCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccch
Q psy15223 1487 FNNWLISKISC--ARILLSPRGRKKLSCWA--NNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASL 1562 (2492)
Q Consensus 1487 ~~~~l~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~ 1562 (2492)
|++|+...... .++.+++.......... .....++++++||||||||++|+++|+++||.+|+|||||||||||++
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iiIGPEGGfs~~Ei~~l~~~g~~~v~LGprILRtETAal 234 (246)
T COG1385 155 LKELLKEIDDEDALKLIYEEKAKEGLLALPLLEALPEGKVLLIIGPEGGFSEDEIELLREAGFTPVSLGPRILRTETAAL 234 (246)
T ss_pred HHHHHHhcccchhhhheeccccccccccchhhhcccCCcEEEEECCCCCCCHHHHHHHHHCCCeEeccCCceehhhHHHH
Confidence 99999876633 35556655444333322 112457899999999999999999999999999999999999999999
Q ss_pred hhhhhhcccc
Q psy15223 1563 VALAILNGEL 1572 (2492)
Q Consensus 1563 ~~~~~~~a~l 1572 (2492)
+|+|.+++.+
T Consensus 235 ~ala~i~~~~ 244 (246)
T COG1385 235 AALAALQALL 244 (246)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 98
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=1.1e-32 Score=364.97 Aligned_cols=169 Identities=18% Similarity=0.176 Sum_probs=148.8
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEe-eEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST 1048 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~h-G~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~ 1048 (2492)
+|.|+|.+|.|++++|+.+.++++.++++..||.++++| ||+ ..+|+|||||+||+|+|.+++++||+|++|||++++
T Consensus 267 ~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L-~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~ 345 (651)
T PTZ00399 267 DPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHL-HIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLH 345 (651)
T ss_pred CcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEE-EeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhc
Confidence 479999999999999999999999999999999999999 885 589999999999999999999999999999999999
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH-hccchHHH
Q psy15223 1049 DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMI 1127 (2492)
Q Consensus 1049 ~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-~~~~f~~a 1127 (2492)
++++|++||++.+..+.+...+++|++..+.+.+...... ....+...|+|++..++.+...+.++| ++|+++.|
T Consensus 346 ~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~~~~~----~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~A 421 (651)
T PTZ00399 346 KWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRESELT----SPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEA 421 (651)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999888888999888876554332111 111245689999999999999999999 78999999
Q ss_pred HHHHHHHHhhhhhhhHHH
Q psy15223 1128 VSKLQIYCSEDLGSFYLD 1145 (2492)
Q Consensus 1128 ~~~l~~f~~~~ls~~Yl~ 1145 (2492)
+..|++|+. .+|.|++
T Consensus 422 l~~L~eLv~--~~N~yi~ 437 (651)
T PTZ00399 422 LQALQKLIS--ATNTYLN 437 (651)
T ss_pred HHHHHHHHH--HHHHHHh
Confidence 999999994 4788885
No 99
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=1.9e-32 Score=362.70 Aligned_cols=169 Identities=18% Similarity=0.176 Sum_probs=148.6
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEe-eeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhcc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST 2198 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~ 2198 (2492)
.|.|+|.+|.|++|+|+.+.++++.+++++.||.++++| ||+ ..+|+|||||+||+|+|.+++++||+|++|||++++
T Consensus 267 ~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L-~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~ 345 (651)
T PTZ00399 267 DPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHL-HIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLH 345 (651)
T ss_pred CcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEE-EeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhc
Confidence 489999999999999999999999999999999999999 885 589999999999999999999999999999999988
Q ss_pred CCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH-hcccHHHH
Q psy15223 2199 DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMI 2277 (2492)
Q Consensus 2199 ~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~a 2277 (2492)
++++|++||++.+..+.+..++++|++..+...+...... ....+...|++++..++.+.+.+.++| ++|+++.|
T Consensus 346 ~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~~~~~----~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~A 421 (651)
T PTZ00399 346 KWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRESELT----SPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEA 421 (651)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999988889999888776544322111 111235679999999999999999999 78999999
Q ss_pred HHHHHHHHHhhhhhhHHH
Q psy15223 2278 VSKLQIYCSEDLGSFYLD 2295 (2492)
Q Consensus 2278 ~~~l~~f~~~~ls~~Yle 2295 (2492)
+..|++|+. .+|.|++
T Consensus 422 l~~L~eLv~--~~N~yi~ 437 (651)
T PTZ00399 422 LQALQKLIS--ATNTYLN 437 (651)
T ss_pred HHHHHHHHH--HHHHHHh
Confidence 999999993 4788885
No 100
>PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules. The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A ....
Probab=100.00 E-value=4.5e-34 Score=337.29 Aligned_cols=164 Identities=37% Similarity=0.556 Sum_probs=125.5
Q ss_pred ccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCC
Q psy15223 1407 RNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIY 1486 (2492)
Q Consensus 1407 r~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~ 1486 (2492)
...+++|++|+||+++|||+|||||||||++|+|+.|+||++++..++..+|.+||++|+++|+|||+|+++|+|.+|.+
T Consensus 59 ~~~~i~L~~al~K~~~~d~il~katELGv~~i~p~~s~rsv~k~~~~~~~~k~~R~~~i~~eA~kQs~r~~~P~i~~~~~ 138 (225)
T PF04452_consen 59 PPPEITLAQALPKGDRMDWILQKATELGVSRIIPVISERSVVKSDGKKSDKKLERWQRIAIEAAKQSGRTRLPEIEPPIS 138 (225)
T ss_dssp SSSEEEEEEE--STTHHHHHHHHHHHTT-SEEEEEE-TTSSS---HHHHHHHHHHHHHHHHHHHHHHT-SS--EEEEEEE
T ss_pred CcceEEEEEEEEcCccHHHHHHHHHhcCCCEEEEEEeeeeeeeccchhhHHHHHHHHHHHHHHHHhcCCCccceeecccc
Confidence 33459999999999999999999999999999999999999998778888999999999999999999999999999999
Q ss_pred hhHHHhcccccceEEeccCCcccccccccCCCC--C-ceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchh
Q psy15223 1487 FNNWLISKISCARILLSPRGRKKLSCWANNQSP--Q-EVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLV 1563 (2492)
Q Consensus 1487 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~ 1563 (2492)
|++++........+++++.+............. + +++++||||||||++|+++|+++||.+||||+||||+|||+++
T Consensus 139 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~~~~~g~~~vsLG~~ILR~ETAai~ 218 (225)
T PF04452_consen 139 LKELLEDIPDEDLLILDEDEEPSLSSLSEILNSEKSFSIAIIIGPEGGFSEEEIEFLKEAGFQPVSLGPRILRTETAAIA 218 (225)
T ss_dssp HHHHHHHSSECSEEEE-TTTTCBGGGCSHTTSCHHC-EEEEEE--TT---HHHHHHHHHCTEEEEB-SSS---HHHHHHH
T ss_pred HHHHhhccccCCEEEEcccccccccchhhhhhcccCCcEEEEECCCCCCCHHHHHHHHHCCCEEEEcCCCEEehHHHHHH
Confidence 999998776666678887765544333222211 1 8999999999999999999999999999999999999999999
Q ss_pred hhhhhcc
Q psy15223 1564 ALAILNG 1570 (2492)
Q Consensus 1564 ~~~~~~a 1570 (2492)
|++.++|
T Consensus 219 als~l~y 225 (225)
T PF04452_consen 219 ALSILQY 225 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9998764
No 101
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=1.8e-32 Score=353.69 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=128.3
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccC
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 2199 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~ 2199 (2492)
.|.|+|.+|.|++++|+.+.++++.++++ .||.+.++|+.+++.+|+|||||+||+|+|.+++++||+|++|||+++++
T Consensus 218 ~~~Dih~gG~Dl~fpHhene~aqs~a~~g-~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~ 296 (465)
T TIGR00435 218 DQIDIHGGGVDLIFPHHENEIAQSEAAFG-KQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVH 296 (465)
T ss_pred CCceeeccccccccchHHHHHHHHHHhcC-CCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCC
Confidence 36899999999999999999999999988 58888989988888999999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 2278 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a~ 2278 (2492)
++++++|+++.++++.+.+++|+|+++++...... ... . ..... .....+.+.+.++|+ ++++..|+
T Consensus 297 ~~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~~~~-~~~-~---~~~~~-------~~~~~~~~~f~~al~dDlnt~~a~ 364 (465)
T TIGR00435 297 YRSPLDFSEELLEAAKNALERLYKALRVLDTTLAY-SGN-Q---SLNKF-------PDEKEFEARFVEAMDDDLNTANAL 364 (465)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccc-c---ccccc-------hhHHHHHHHHHHHHhhccCHHHHH
Confidence 99999999999999999999999999987543221 000 0 00000 112345567777885 89999999
Q ss_pred HHHHHHHH
Q psy15223 2279 SKLQIYCS 2286 (2492)
Q Consensus 2279 ~~l~~f~~ 2286 (2492)
..|++++.
T Consensus 365 ~~l~~~~~ 372 (465)
T TIGR00435 365 AVLFELAK 372 (465)
T ss_pred HHHHHHHH
Confidence 99999984
No 102
>TIGR00046 RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA.
Probab=100.00 E-value=3e-33 Score=332.33 Aligned_cols=163 Identities=37% Similarity=0.523 Sum_probs=138.6
Q ss_pred cccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCC
Q psy15223 1406 RRNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNI 1485 (2492)
Q Consensus 1406 rr~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~ 1485 (2492)
....+++|++|+||+++|||+|||||||||++|+|+.|+||+++++.+ ..+|.+||++|++||||||+|+++|+|.+|.
T Consensus 73 ~~~~~i~l~~al~K~~~~d~il~katELGv~~i~p~~s~rs~~~~~~~-~~~k~~rw~~i~~eA~~Q~~r~~lP~i~~~~ 151 (240)
T TIGR00046 73 ELPLKIHLAIVLIKGKKMEFIIRKLTELGVSKIIPFNAERSVVKLDIE-AIKKLERWQKIAIEAAEQSGRNIVPEIKPPK 151 (240)
T ss_pred CCCcEEEEEEeecCCccHHHHHHHHHHcCCCEEEEEEeccceeccCch-HHHHHHHHHHHHHHHHHhcCCCCCCEECCcC
Confidence 445679999999999999999999999999999999999999998766 6689999999999999999999999999999
Q ss_pred ChhHHHhccccc-ceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchhh
Q psy15223 1486 YFNNWLISKISC-ARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVA 1564 (2492)
Q Consensus 1486 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~ 1564 (2492)
+|++++...... ..+++++++......+. ...++++++||||||||++|+++|.++||.+||||+||||||||+++|
T Consensus 152 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~v~~~IGPEGGfs~~Ei~~~~~~gf~~vsLG~rILR~ETA~i~a 229 (240)
T TIGR00046 152 NLKEKCAEAYEEALKLNFHPEASPLSANLP--IPAGNIVIIIGPEGGFSEKEIQLLKEKGFTPVLLGPRILRTETAPLYA 229 (240)
T ss_pred CHHHHHhhCcCCCeEEEECCcccchhhhhc--cCCCcEEEEECCCCCCCHHHHHHHHHCCCEEEccCCcchhhccHHHHH
Confidence 999998754332 33455544332212221 123469999999999999999999999999999999999999999999
Q ss_pred hhhhccc
Q psy15223 1565 LAILNGE 1571 (2492)
Q Consensus 1565 ~~~~~a~ 1571 (2492)
+|.+++.
T Consensus 230 ls~~~~~ 236 (240)
T TIGR00046 230 LSILQAL 236 (240)
T ss_pred HHHHHHH
Confidence 9988753
No 103
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=2e-32 Score=339.01 Aligned_cols=140 Identities=19% Similarity=0.186 Sum_probs=123.8
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhc-cChhHHHHHHhccC
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVASTD 2199 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~l~s~~ 2199 (2492)
+.|+|.+|.|++++|+.+.++++.+++++.||.++++|+.+++.+|+|||||+||+|+|.++++. |++|++|||+++++
T Consensus 241 ~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~ 320 (411)
T TIGR03447 241 GFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGH 320 (411)
T ss_pred ceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCC
Confidence 57999999999999999999999999999999999999999999999999999999999999886 89999999999999
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 2278 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a~ 2278 (2492)
|+++++||++.++++.+.+++|++++... . . . .+..+...+.++|+ ++++..|+
T Consensus 321 Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~----~------~-------~--------~~~~~~~~~~~al~dDln~p~a~ 375 (411)
T TIGR03447 321 YRQDRDWTDAVLAEAEARLARWRAALAAT----D------A-------P--------DATDLIARLRQHLANDLDTPAAL 375 (411)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHhhc----c------c-------c--------hHHHHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999998887532 0 0 0 12234456667775 89999999
Q ss_pred HHHHHHH
Q psy15223 2279 SKLQIYC 2285 (2492)
Q Consensus 2279 ~~l~~f~ 2285 (2492)
..|++++
T Consensus 376 ~~l~~~~ 382 (411)
T TIGR03447 376 AAVDNWA 382 (411)
T ss_pred HHHHHHH
Confidence 9999988
No 104
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=2.4e-32 Score=338.30 Aligned_cols=140 Identities=19% Similarity=0.186 Sum_probs=123.9
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhh-cChhhHHHHhhccC
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVASTD 1049 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~-yGaD~lRl~l~s~~ 1049 (2492)
+.|+|.+|.|++++|+.+.++++.++++..||.++++|+..++.+|+|||||+||+|+|.++++. |++|++|||+++++
T Consensus 241 ~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~ 320 (411)
T TIGR03447 241 GFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGH 320 (411)
T ss_pred ceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCC
Confidence 46999999999999999999999999999999999999999999999999999999999999886 89999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHH
Q psy15223 1050 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 1128 (2492)
Q Consensus 1050 ~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~ 1128 (2492)
|+++++||++.|+++.+.+.++++++..+ . . . .+..+...+.++++ .+++..|+
T Consensus 321 Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~----~----~---------~--------~~~~~~~~~~~al~dDln~p~a~ 375 (411)
T TIGR03447 321 YRQDRDWTDAVLAEAEARLARWRAALAAT----D----A---------P--------DATDLIARLRQHLANDLDTPAAL 375 (411)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHhhc----c----c---------c--------hHHHHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999998887632 0 0 0 12234456667776 89999999
Q ss_pred HHHHHHH
Q psy15223 1129 SKLQIYC 1135 (2492)
Q Consensus 1129 ~~l~~f~ 1135 (2492)
..|++++
T Consensus 376 ~~l~~~~ 382 (411)
T TIGR03447 376 AAVDNWA 382 (411)
T ss_pred HHHHHHH
Confidence 9999998
No 105
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.1e-32 Score=334.89 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=126.8
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhc-cChhHHHHHHhccC
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVASTD 2199 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~l~s~~ 2199 (2492)
|.|+|.+|.|++++|+.+.++++.+++++.||.++++||.+++.+|+|||||+||+|+|.++++. ++++++|||+++++
T Consensus 214 ~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~ 293 (384)
T PRK12418 214 GFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGH 293 (384)
T ss_pred CcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccC
Confidence 67999999999999999999999999999999999999999999999999999999999998753 55559999999999
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 2278 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a~ 2278 (2492)
++++++|+++.++++.+.+.+++|++... . . . .+.++.+.+.++|+ ++++..|+
T Consensus 294 yr~~l~fs~e~l~~a~~~l~r~~~~~~~~----~----~---------~--------~~~~~~~~f~~al~dDlnt~~a~ 348 (384)
T PRK12418 294 YRADREWTDAVLAEAEARLARWRAAAALP----A----G---------P--------DAADVVARVRAALADDLDTPGAL 348 (384)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHhcc----c----c---------c--------hHHHHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999877531 0 0 0 12344677888886 79999999
Q ss_pred HHHHHHHHhhhhhhHH
Q psy15223 2279 SKLQIYCSEDLGSFYL 2294 (2492)
Q Consensus 2279 ~~l~~f~~~~ls~~Yl 2294 (2492)
..|++++. ..|.|+
T Consensus 349 ~~l~~~~~--~~n~~~ 362 (384)
T PRK12418 349 AAVDGWAT--DALEGG 362 (384)
T ss_pred HHHHHHHH--HHHhcc
Confidence 99999994 356664
No 106
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.6e-32 Score=334.50 Aligned_cols=147 Identities=15% Similarity=0.146 Sum_probs=126.6
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhh-cChhhHHHHhhccC
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVASTD 1049 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~-yGaD~lRl~l~s~~ 1049 (2492)
+.|+|.+|.|++++|+.+.++++.++++..||.++++||.+++.+|+|||||+||+|+|.++++. ++++++|||+++++
T Consensus 214 ~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~ 293 (384)
T PRK12418 214 GFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGH 293 (384)
T ss_pred CcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccC
Confidence 57999999999999999999999999999999999999999999999999999999999998653 55559999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHH
Q psy15223 1050 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 1128 (2492)
Q Consensus 1050 ~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~ 1128 (2492)
|+++++|+++.++++.+.+.+++|+++.. . . . .+.++.+.+.++++ ++++..|+
T Consensus 294 yr~~l~fs~e~l~~a~~~l~r~~~~~~~~----~----~----------~-------~~~~~~~~f~~al~dDlnt~~a~ 348 (384)
T PRK12418 294 YRADREWTDAVLAEAEARLARWRAAAALP----A----G----------P-------DAADVVARVRAALADDLDTPGAL 348 (384)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHhcc----c----c----------c-------hHHHHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999987532 0 0 0 12344677888887 79999999
Q ss_pred HHHHHHHhhhhhhhHH
Q psy15223 1129 SKLQIYCSEDLGSFYL 1144 (2492)
Q Consensus 1129 ~~l~~f~~~~ls~~Yl 1144 (2492)
..|++++.. .|.|+
T Consensus 349 ~~l~~~~~~--~n~~~ 362 (384)
T PRK12418 349 AAVDGWATD--ALEGG 362 (384)
T ss_pred HHHHHHHHH--HHhcc
Confidence 999999943 56664
No 107
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.98 E-value=4.2e-31 Score=341.02 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=128.0
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCc
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY 1050 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~ 1050 (2492)
|.|+|.+|.|++++|+.+.++++.++++ .||.++++|+.+++.+|+|||||+||+|+|.|++++||+|++|||++++++
T Consensus 219 ~~Dih~gG~Dl~fpHhene~aqs~a~~g-~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~ 297 (465)
T TIGR00435 219 QIDIHGGGVDLIFPHHENEIAQSEAAFG-KQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHY 297 (465)
T ss_pred CceeeccccccccchHHHHHHHHHHhcC-CCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCC
Confidence 6799999999999999999999999988 588888888888889999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHHH
Q psy15223 1051 SKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIVS 1129 (2492)
Q Consensus 1051 ~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~~ 1129 (2492)
+++++|+++.++++.+.+.+|+|+++++...... ... . ... .+ .....+.+.+.++|+ .+++..|+.
T Consensus 298 ~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~~~~-~~~---~-~~~---~~----~~~~~~~~~f~~al~dDlnt~~a~~ 365 (465)
T TIGR00435 298 RSPLDFSEELLEAAKNALERLYKALRVLDTTLAY-SGN---Q-SLN---KF----PDEKEFEARFVEAMDDDLNTANALA 365 (465)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccc---c-ccc---cc----hhHHHHHHHHHHHHhhccCHHHHHH
Confidence 9999999999999999999999999987543221 000 0 000 00 112345566777776 899999999
Q ss_pred HHHHHHh
Q psy15223 1130 KLQIYCS 1136 (2492)
Q Consensus 1130 ~l~~f~~ 1136 (2492)
.|.+++.
T Consensus 366 ~l~~~~~ 372 (465)
T TIGR00435 366 VLFELAK 372 (465)
T ss_pred HHHHHHH
Confidence 9999994
No 108
>PRK11713 16S ribosomal RNA methyltransferase RsmE; Provisional
Probab=99.97 E-value=1.1e-31 Score=318.03 Aligned_cols=159 Identities=42% Similarity=0.635 Sum_probs=134.6
Q ss_pred cccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCC
Q psy15223 1406 RRNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNI 1485 (2492)
Q Consensus 1406 rr~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~ 1485 (2492)
.....+++++|+||+++|||+|||||||||++|+|+.|+||+.++..++..+|.+||++|+++|||||+|+++|+|..+.
T Consensus 71 ~~~~~l~l~~al~k~~~~e~il~k~tELGV~~i~p~~sers~~~~~~~~~~~k~~r~~~i~~~A~~Qs~r~~~P~i~~~~ 150 (234)
T PRK11713 71 EPPLRLTLAQALPKGDRLELILQKATELGVSAIIPLISERSVVKLDGERADKKLERWQKIAIEAAEQSGRTRIPEVRPPI 150 (234)
T ss_pred CCCCeEEEEEeecCCccHHHHHHHHHHhCcCeEEEEEeccceecccchhhHHHHHHHHHHHHHHHHhcCCCCCCEEcCcC
Confidence 44567999999999999999999999999999999999999999877777789999999999999999999999999999
Q ss_pred ChhHHHhcccccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchhhh
Q psy15223 1486 YFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVAL 1565 (2492)
Q Consensus 1486 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~~ 1565 (2492)
+|++++++..... + . .... ..+. ....++++++||||||||++|+++|+++||.+||||+||||+|||+++++
T Consensus 151 ~~~~~l~~~~~~~-~--~-~~~~--~~l~-~~~~~~i~viIGPEGGfs~~Ei~~l~~~g~~~vsLG~~ILR~ETA~i~al 223 (234)
T PRK11713 151 SLKEFLEELLPAD-L--K-AGLK--LVLH-PEAGGKVLLLIGPEGGFSPEEIELLREAGFTPVSLGPRILRTETAALAAL 223 (234)
T ss_pred CHHHHHhhccccc-c--c-hhhh--hhcC-cCCCCeEEEEECCCCCCCHHHHHHHHHCCCEEeccCCCchhhhhHHHHHH
Confidence 9999987543211 1 0 0000 0011 11234699999999999999999999999999999999999999999999
Q ss_pred hhhccc
Q psy15223 1566 AILNGE 1571 (2492)
Q Consensus 1566 ~~~~a~ 1571 (2492)
+.+.+.
T Consensus 224 s~~~~~ 229 (234)
T PRK11713 224 AALQAL 229 (234)
T ss_pred HHHHHH
Confidence 987644
No 109
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=99.97 E-value=9.5e-32 Score=297.68 Aligned_cols=147 Identities=47% Similarity=0.804 Sum_probs=139.8
Q ss_pred CCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCC
Q psy15223 46 DSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEP 125 (2492)
Q Consensus 46 D~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EP 125 (2492)
|..||..|+++|+++...|+.|||||||++|+||++|+|+..+.+||+.||||+||++|.+.++++++. |||||||+||
T Consensus 13 ~~~~m~~A~~~A~~a~~~g~~pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~~~l~-g~tlY~TlEP 91 (172)
T PRK10860 13 HEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLL-DATLYVTLEP 91 (172)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCCCCcC-CcEEEeeCCC
Confidence 567999999999999999999999999999999999999999999999999999999999998888886 9999999999
Q ss_pred hHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhccC
Q psy15223 126 CAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 193 (2492)
Q Consensus 126 C~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~ 193 (2492)
|+||++||+|+||+|||||+.+++.++.|+++.++...++++++.|++|++++||.+|++.||+++|+
T Consensus 92 C~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~~l~~~~~~~~i~v~~gv~~~e~~~ll~~ff~~~~~ 159 (172)
T PRK10860 92 CVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGVLADECAALLSDFFRMRRQ 159 (172)
T ss_pred cHHHHHHHHHhCCCEEEEeecCCCCCCCCcHHHHhhcccCCCCCEEEeCccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988664
No 110
>PLN02946 cysteine-tRNA ligase
Probab=99.97 E-value=1.4e-29 Score=324.21 Aligned_cols=165 Identities=19% Similarity=0.190 Sum_probs=128.6
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEe-eEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccC
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 1049 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~h-G~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~ 1049 (2492)
+.|+|.+|.|++++|+.+.+.++.+..+. +|-++++| |||. .+|+|||||+||+|++.|++++||+|++|||+++++
T Consensus 277 ~~DIH~GG~DL~FPHHENEiAQsea~~g~-~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~h 354 (557)
T PLN02946 277 SFDIHGGGMDLVFPHHENEIAQSCAACCD-SNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTH 354 (557)
T ss_pred CeeEeccccccCCCcccchHHHHHHHhCC-CCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccC
Confidence 47999999999999999999999998775 56555555 6666 999999999999999999999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHH
Q psy15223 1050 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 1128 (2492)
Q Consensus 1050 ~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~ 1128 (2492)
|+++++|+++.++.+...+.++.++++.+...+..-. ...... ..+.-+...+..+.+.+.+||+ ++++..|+
T Consensus 355 yr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~---~~~~~~---~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al 428 (557)
T PLN02946 355 YRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHD---STFEKD---SVPPDTLNCINKFHDEFVTSMSDDLHTPVAL 428 (557)
T ss_pred CCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cccccc---ccchhhHHHHHHHHHHHHHHHHhccChHHHH
Confidence 9999999999999999888888888877643332100 000000 0111122345567788888887 89999999
Q ss_pred HHHHHHHhhhhhhhHHH
Q psy15223 1129 SKLQIYCSEDLGSFYLD 1145 (2492)
Q Consensus 1129 ~~l~~f~~~~ls~~Yl~ 1145 (2492)
..|++++.. .|.+++
T Consensus 429 ~~l~~~vk~--~N~~~~ 443 (557)
T PLN02946 429 AALSEPLKT--INDLLH 443 (557)
T ss_pred HHHHHHHHH--HHHHhh
Confidence 999999942 455654
No 111
>PLN02946 cysteine-tRNA ligase
Probab=99.97 E-value=1.8e-29 Score=323.03 Aligned_cols=165 Identities=19% Similarity=0.188 Sum_probs=129.1
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEe-eeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccC
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 2199 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~ 2199 (2492)
+.|+|.+|.|++|+|+.+.+.++.+..+. +|-+.++| |||. .+|+|||||+||+|++.|++++||+|++|||+++++
T Consensus 277 ~~DIH~GG~DL~FPHHENEiAQsea~~g~-~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~h 354 (557)
T PLN02946 277 SFDIHGGGMDLVFPHHENEIAQSCAACCD-SNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTH 354 (557)
T ss_pred CeeEeccccccCCCcccchHHHHHHHhCC-CCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccC
Confidence 57999999999999999999999998765 66666666 6665 999999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 2278 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a~ 2278 (2492)
|+++++|+++.++.+.+.+.++++++..+...+.... ....... .+..+...+..+.+.+.++|+ ++++..|+
T Consensus 355 yr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~---~~~~~~~---~~~~~~~~~~~~~~~f~~Al~DDlntp~Al 428 (557)
T PLN02946 355 YRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHD---STFEKDS---VPPDTLNCINKFHDEFVTSMSDDLHTPVAL 428 (557)
T ss_pred CCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---ccccccc---cchhhHHHHHHHHHHHHHHHHhccChHHHH
Confidence 9999999999999999988899888877643322100 0000000 011122345567788889986 89999999
Q ss_pred HHHHHHHHhhhhhhHHH
Q psy15223 2279 SKLQIYCSEDLGSFYLD 2295 (2492)
Q Consensus 2279 ~~l~~f~~~~ls~~Yle 2295 (2492)
..|++++. ..|.++.
T Consensus 429 ~~l~~~vk--~~N~~~~ 443 (557)
T PLN02946 429 AALSEPLK--TINDLLH 443 (557)
T ss_pred HHHHHHHH--HHHHHhh
Confidence 99999994 3555553
No 112
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.4e-31 Score=287.79 Aligned_cols=148 Identities=45% Similarity=0.814 Sum_probs=141.8
Q ss_pred cccccCCCCCCCcccccccccccCCcceeeeeee-CCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEE
Q psy15223 41 MLIETDSPYLSPIPHRAKLALIAGEVPVGAVLVK-NNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKI 119 (2492)
Q Consensus 41 ~~~etD~~~M~~a~~~a~~~~~~~~~pvGaviv~-~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~l 119 (2492)
+..++|..||+.|+.+|+++.+.|+.|||||||+ +|+|++.|+|.....+||++|||++||++|++.+++++|. ||||
T Consensus 3 ~~~~~~~~~m~~al~~A~~a~~~ge~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~~~l~-~~tl 81 (152)
T COG0590 3 FLSEKDEDFMREALKEAKKAGDEGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLK-DCTL 81 (152)
T ss_pred chhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCCCCcC-CcEE
Confidence 3456788999999999999998899999999998 9999999999999999999999999999999999998886 9999
Q ss_pred EEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHH
Q psy15223 120 YVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFI 189 (2492)
Q Consensus 120 y~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~ 189 (2492)
|||+|||+||++||+||||+|||||+++++.|+.|+...++.+...+|++.|.+|++++||..+++.||.
T Consensus 82 yvT~EPC~MCagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~~~~~~~~~v~~g~~~~e~~~~l~~f~~ 151 (152)
T COG0590 82 YVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPRLNHRVEVYGGILEEECSALLSEFFR 151 (152)
T ss_pred EEecCCHHHHHHHHHHhCCCeEEEecCCCCcCccCcccccccCCCCCcCeEEecchhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985
No 113
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=1.5e-29 Score=322.65 Aligned_cols=147 Identities=18% Similarity=0.210 Sum_probs=124.6
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCc---------------cccEEEEeeeEEcCCCceeeeccCCccCcchhhhc
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSA---------------PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL 2185 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~---------------pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~ 2185 (2492)
+.|+|.+|.|++|+|+.+.++++.++.|.. ||.+.++|+-.+..+|+|||||+||+|+|.+++++
T Consensus 446 ~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ 525 (699)
T PRK14535 446 TFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQ 525 (699)
T ss_pred cceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHh
Confidence 469999999999999999999999987762 68888888766669999999999999999999999
Q ss_pred cChhHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHH
Q psy15223 2186 FGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI 2265 (2492)
Q Consensus 2186 yGaD~lR~~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v 2265 (2492)
||+|++|||+++++|+++++|+++.++++.+.+++++++++.+... .+ . ....+..+.+.+
T Consensus 526 ygpdalRl~lLsshYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~~----~~--------~-------~~~~l~~~~~~f 586 (699)
T PRK14535 526 YDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA----EF--------M-------LSENVNDYTRRF 586 (699)
T ss_pred CCHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhhc----cc--------h-------hhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999887654210 00 0 012344566788
Q ss_pred HHHHh-cccHHHHHHHHHHHHH
Q psy15223 2266 LSHYR-MYEFHMIVSKLQIYCS 2286 (2492)
Q Consensus 2266 ~~a~e-~~~f~~a~~~l~~f~~ 2286 (2492)
.++|+ ++++..|+..|++++.
T Consensus 587 ~~AL~DDlntp~Ala~L~~lvk 608 (699)
T PRK14535 587 YAAMNDDFGTVEAVAVLFELAG 608 (699)
T ss_pred HHHHhhccChHHHHHHHHHHHH
Confidence 88886 8999999999999984
No 114
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=1.5e-29 Score=321.45 Aligned_cols=165 Identities=15% Similarity=0.158 Sum_probs=129.5
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhc-cChhHHHHHHhccC
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVASTD 2199 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~l~s~~ 2199 (2492)
..|+|.+|.|++|+|+.+.++++.++.+. ||.++++|+.++..+|+|||||+||+|++.+++++ |+++++|||+++++
T Consensus 233 ~~DIH~GG~DliFPHHeneiAqs~a~~g~-~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~ 311 (490)
T PRK14536 233 QCDIHIGGVDHIRVHHTNEIAQCEAATGK-PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGH 311 (490)
T ss_pred ceeEEeccccCCCcchhhHHHHHHHhcCC-CcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCC
Confidence 35999999999999999999999998875 99999999999999999999999999999999998 99999999999999
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccc-ccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINI-IKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMI 2277 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a 2277 (2492)
++++++||++.|.++.+.+.+|.+++..+........+.... .........+.-....+..+.+.+.++|+ ++++..|
T Consensus 312 yr~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~A 391 (490)
T PRK14536 312 YRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKA 391 (490)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHH
Confidence 999999999999999999999999887664322110000000 00000000000011234566788888886 8999999
Q ss_pred HHHHHHHHH
Q psy15223 2278 VSKLQIYCS 2286 (2492)
Q Consensus 2278 ~~~l~~f~~ 2286 (2492)
+..|++++.
T Consensus 392 l~~l~~~~~ 400 (490)
T PRK14536 392 LSELQKLVK 400 (490)
T ss_pred HHHHHHHHH
Confidence 999999983
No 115
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=1.6e-29 Score=322.26 Aligned_cols=147 Identities=18% Similarity=0.227 Sum_probs=124.1
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCC---------------CceEEEEeeEEEcCCCccccccCCCccCcchhhhh
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSA---------------PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL 1035 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~---------------p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~ 1035 (2492)
+.|+|.+|.|++++|+.+.+.++.++.|.. ||.++++|.-.+..+|+|||||+||+|+|.+++++
T Consensus 446 ~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ 525 (699)
T PRK14535 446 TFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQ 525 (699)
T ss_pred cceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHh
Confidence 469999999999999999999999988762 68788887666669999999999999999999999
Q ss_pred cChhhHHHHhhccCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHH
Q psy15223 1036 FGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI 1115 (2492)
Q Consensus 1036 yGaD~lRl~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v 1115 (2492)
||+|++|||+++++|+++++||++.++++...+.+++++++.+... . . . ....+..+.+.+
T Consensus 526 ygpdalRl~lLsshYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~~--~---------~----~----~~~~l~~~~~~f 586 (699)
T PRK14535 526 YDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA--E---------F----M----LSENVNDYTRRF 586 (699)
T ss_pred CCHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhhc--c---------c----h----hhhhHHHHHHHH
Confidence 9999999999999999999999999999999999998888654210 0 0 0 012344566778
Q ss_pred HHHHh-ccchHHHHHHHHHHHh
Q psy15223 1116 LSHYR-MYEFHMIVSKLQIYCS 1136 (2492)
Q Consensus 1116 ~~a~~-~~~f~~a~~~l~~f~~ 1136 (2492)
.+|++ .+++..|+..|++++.
T Consensus 587 ~~AL~DDlntp~Ala~L~~lvk 608 (699)
T PRK14535 587 YAAMNDDFGTVEAVAVLFELAG 608 (699)
T ss_pred HHHHhhccChHHHHHHHHHHHH
Confidence 88886 8999999999999984
No 116
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.96 E-value=4.1e-29 Score=317.56 Aligned_cols=164 Identities=15% Similarity=0.159 Sum_probs=129.1
Q ss_pred eeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhh-cChhhHHHHhhccCc
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVASTDY 1050 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~-yGaD~lRl~l~s~~~ 1050 (2492)
.|+|.+|.|++++|+.+.+.++.++.|. ||.++++|+.++..+|+|||||+||+|++.+++++ |+++++|||+++++|
T Consensus 234 ~DIH~GG~DliFPHHeneiAqs~a~~g~-~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~y 312 (490)
T PRK14536 234 CDIHIGGVDHIRVHHTNEIAQCEAATGK-PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHY 312 (490)
T ss_pred eeEEeccccCCCcchhhHHHHHHHhcCC-CcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCC
Confidence 5999999999999999999999998875 99999999999999999999999999999999998 999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccc-ccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHH
Q psy15223 1051 SKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINI-IKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 1128 (2492)
Q Consensus 1051 ~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~-~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~ 1128 (2492)
+++++||++.|.++.+.+.+|.+++..+........+.... .........+.-....+..+...+.+||+ .+++..|+
T Consensus 313 r~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al 392 (490)
T PRK14536 313 RSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKAL 392 (490)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999887664322110000000 00000000000011234566788888886 89999999
Q ss_pred HHHHHHHh
Q psy15223 1129 SKLQIYCS 1136 (2492)
Q Consensus 1129 ~~l~~f~~ 1136 (2492)
..|++++.
T Consensus 393 ~~l~~~~~ 400 (490)
T PRK14536 393 SELQKLVK 400 (490)
T ss_pred HHHHHHHH
Confidence 99999983
No 117
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=1.2e-26 Score=293.15 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=125.6
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhc-cChhHHHHHHhccC
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVASTD 2199 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~l~s~~ 2199 (2492)
..|+|.+|.|++++|+...+.++.+..+. ||.++++|+.++..+|+|||||+||+|++.|++++ |+++++|||+++++
T Consensus 233 ~~DIH~GG~DliFPHHene~Aqs~a~~g~-~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~ 311 (481)
T PRK14534 233 TLDIHLGGVDHIGVHHINEIAIAECYLNK-KWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAH 311 (481)
T ss_pred cceEEecccccCCCcchhHHHHHhhhcCC-CcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCC
Confidence 47999999999999999999999988764 88888888877778999999999999999999996 99999999999999
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 2278 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a~ 2278 (2492)
++++++||++.|+++.+.+++|++.++.+...+...... ......... .......+.+.+.++|+ ++++..|+
T Consensus 312 yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~f~~Al~DDlNtp~Al 385 (481)
T PRK14534 312 YRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFDLN--LLNKDLENI----EFSLEKEYYDSFLEKIAFDLNIPQGL 385 (481)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccccccccc----hhhhHHHHHHHHHHHHhhcCChHHHH
Confidence 999999999999999999999999887664433211000 000000000 00112344567888886 89999999
Q ss_pred HHHHHHHH
Q psy15223 2279 SKLQIYCS 2286 (2492)
Q Consensus 2279 ~~l~~f~~ 2286 (2492)
..|++++.
T Consensus 386 ~~l~~~~k 393 (481)
T PRK14534 386 ALLWDIIK 393 (481)
T ss_pred HHHHHHHH
Confidence 99999883
No 118
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.94 E-value=4.8e-26 Score=287.78 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=125.5
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhh-cChhhHHHHhhccC
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVASTD 1049 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~-yGaD~lRl~l~s~~ 1049 (2492)
..|+|.+|.|++++|+.+.+.++.+..|. ||.++++|+.++..+|+|||||+||+|++.|++++ |+++++|||+++++
T Consensus 233 ~~DIH~GG~DliFPHHene~Aqs~a~~g~-~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~ 311 (481)
T PRK14534 233 TLDIHLGGVDHIGVHHINEIAIAECYLNK-KWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAH 311 (481)
T ss_pred cceEEecccccCCCcchhHHHHHhhhcCC-CcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCC
Confidence 46999999999999999999999988764 88888888877778999999999999999999996 99999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHH
Q psy15223 1050 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 1128 (2492)
Q Consensus 1050 ~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~ 1128 (2492)
|+++++||++.|+++...++++++.++.+...+...... ......... .......+.+.+.+||+ .+++..|+
T Consensus 312 yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~f~~Al~DDlNtp~Al 385 (481)
T PRK14534 312 YRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFDLN--LLNKDLENI----EFSLEKEYYDSFLEKIAFDLNIPQGL 385 (481)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccccccccc----hhhhHHHHHHHHHHHHhhcCChHHHH
Confidence 999999999999999999999999888664443211000 000000000 00112345567788886 89999999
Q ss_pred HHHHHHHh
Q psy15223 1129 SKLQIYCS 1136 (2492)
Q Consensus 1129 ~~l~~f~~ 1136 (2492)
..|++++.
T Consensus 386 ~~l~~~~k 393 (481)
T PRK14534 386 ALLWDIIK 393 (481)
T ss_pred HHHHHHHH
Confidence 99999983
No 119
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.94 E-value=6.4e-27 Score=271.00 Aligned_cols=86 Identities=27% Similarity=0.311 Sum_probs=82.6
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccCC
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY 2200 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~~ 2200 (2492)
|.|++.+|.|++++|+.++++++.+++++ ||+++++|+.+++.+|+|||||+||+|+|.|++++||+|++|||++++++
T Consensus 128 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~ 206 (213)
T cd00672 128 TFDIHGGGVDLIFPHHENEIAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHY 206 (213)
T ss_pred CccEEeecCCCCcChHHHHHHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCc
Confidence 57999999999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred CCccccc
Q psy15223 2201 SKDLSIS 2207 (2492)
Q Consensus 2201 ~~d~~fs 2207 (2492)
.++++|+
T Consensus 207 ~~~l~f~ 213 (213)
T cd00672 207 RSPLDFS 213 (213)
T ss_pred CCCCCCC
Confidence 9999886
No 120
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.94 E-value=9.5e-27 Score=269.57 Aligned_cols=86 Identities=27% Similarity=0.311 Sum_probs=82.7
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCc
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY 1050 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~ 1050 (2492)
|.|++.+|.|++++|+.++++++.++.+. ||+++++|+.+++.+|+|||||+||+|+|.|++++||+|++|||++++++
T Consensus 128 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~ 206 (213)
T cd00672 128 TFDIHGGGVDLIFPHHENEIAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHY 206 (213)
T ss_pred CccEEeecCCCCcChHHHHHHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCc
Confidence 57999999999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred ccccccC
Q psy15223 1051 SKDLSIS 1057 (2492)
Q Consensus 1051 ~~d~~fs 1057 (2492)
.++++|+
T Consensus 207 ~~~l~f~ 213 (213)
T cd00672 207 RSPLDFS 213 (213)
T ss_pred CCCCCCC
Confidence 9999886
No 121
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.94 E-value=1.7e-24 Score=285.54 Aligned_cols=196 Identities=23% Similarity=0.257 Sum_probs=144.6
Q ss_pred eeecccccchhhHHHHHHHHHHhcCCCCce-EEEEe---eEEEcCCCccccccCCCccCcchhhhh-cCh----------
Q psy15223 974 LYLEGSDQHRGWFHSSLLTSIILNKSAPYK-ALLTH---GFVVDSKGKKMSKSKGNIIKPQKLCNL-FGA---------- 1038 (2492)
Q Consensus 974 l~~~G~D~~rgwf~s~l~~~~~~~~~~p~k-~v~~h---G~vld~~G~KMSKS~GN~i~p~~ii~~-yGa---------- 1038 (2492)
+|+.|.||. +||..+.....++... |.. +++.| |++++++|+|||||+||+|+|+|++++ +|+
T Consensus 276 i~V~g~~q~-~hf~~~~~~~~~lg~~-~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~ 353 (507)
T PRK01611 276 IYVVGADHH-GHFKRLKAALKALGYD-PDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEI 353 (507)
T ss_pred EEEECCChH-HHHHHHHHHHHHcCCC-cccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhh
Confidence 667788998 6888877776666543 443 55666 899999999999999999999999999 999
Q ss_pred ------hhHHHHhhccCcccccccCHHHHHHHH--------HHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHH
Q psy15223 1039 ------EILRLWVASTDYSKDLSISNEILNRVV--------ETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYA 1104 (2492)
Q Consensus 1039 ------D~lRl~l~s~~~~~d~~fs~~~l~~~~--------~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~i 1104 (2492)
|++||++++.+..+|++|+++.+.... -++.|+.+.++..... ...+. ......+.|+|+
T Consensus 354 a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvqYa~aR~~sil~k~~~~--~~~~~----~~~l~~~~e~~L 427 (507)
T PRK01611 354 AEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHARICSILRKAAEA--GIDLL----LALLTEEEEKEL 427 (507)
T ss_pred hhhhccceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHHHHHHHHHHHHHhhhcc--Ccccc----ccccCCHHHHHH
Confidence 999999999889999999999876542 2344566655543110 11111 011125789999
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccC-ChHHHHHHHHHHHHHHHHHHHHhcc
Q psy15223 1105 IINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK-NSHARRSAQTSIWHINQSLLRLISP 1181 (2492)
Q Consensus 1105 l~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~-~~~~r~sa~~~L~~il~~l~~lLaP 1181 (2492)
+.+|..+...+.+++++|+++.+++.+++|+ +.|++||=+ . ++-.+.. -...|.........+|...+.||.-
T Consensus 428 l~~L~~~~~~v~~a~~~~~p~~l~~yl~~la-~~f~~fY~~-~--~l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi 501 (507)
T PRK01611 428 IKKLAEFPEVVESAAEELEPHRIANYLYELA-GAFHSFYNR-V--LLKDEEEELRNARLALVKATAQVLKNGLDLLGI 501 (507)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH-HHHHHHHHH-C--CCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999 789999932 2 2221111 1235555566666777777777753
No 122
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=6.1e-25 Score=269.96 Aligned_cols=147 Identities=23% Similarity=0.309 Sum_probs=130.6
Q ss_pred ceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccCCC
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYS 2201 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~~~ 2201 (2492)
.|+|.+|.|++|+|+.+.++++.+.+|..||.++++|.-.+..+|+|||||+||++++.|++++|++.+|||+|++++|+
T Consensus 222 ~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR 301 (464)
T COG0215 222 FDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYR 301 (464)
T ss_pred cceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhC
Confidence 59999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHH
Q psy15223 2202 KDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIVSK 2280 (2492)
Q Consensus 2202 ~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a~~~ 2280 (2492)
++++||++.|+++.+.+.+|+|+++.+.....+... . .+.++...+.++|+ +|++..|+..
T Consensus 302 ~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~~----------~--------~~~~~~~~f~~al~DDfnt~~al~~ 363 (464)
T COG0215 302 SPLDFSEELLEEAKKALERLYNALRRLRDLAGDAEL----------A--------DLKEFEARFREALDDDFNTPKALAV 363 (464)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHhhcccccc----------c--------hhHHHHHHHHHHHHhccCcHHHHHH
Confidence 999999999999999999999999876532222110 0 34556666888885 8999999999
Q ss_pred HHHHHH
Q psy15223 2281 LQIYCS 2286 (2492)
Q Consensus 2281 l~~f~~ 2286 (2492)
|.+++.
T Consensus 364 l~~l~~ 369 (464)
T COG0215 364 LFELAK 369 (464)
T ss_pred HHHHHH
Confidence 999984
No 123
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.3e-24 Score=267.08 Aligned_cols=147 Identities=23% Similarity=0.309 Sum_probs=131.0
Q ss_pred eeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcc
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYS 1051 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~ 1051 (2492)
.|+|.+|.|++++|+.+.+.+|.+.+|..||.++++|...+..+|+|||||+||++++.|++++|++.+|||++++++|+
T Consensus 222 ~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR 301 (464)
T COG0215 222 FDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYR 301 (464)
T ss_pred cceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhC
Confidence 59999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHHHH
Q psy15223 1052 KDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIVSK 1130 (2492)
Q Consensus 1052 ~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~~~ 1130 (2492)
++++||++.|+++...+.+|.|+++.+.....+... . ...++..++.++++ .|++..|+..
T Consensus 302 ~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~~----------~--------~~~~~~~~f~~al~DDfnt~~al~~ 363 (464)
T COG0215 302 SPLDFSEELLEEAKKALERLYNALRRLRDLAGDAEL----------A--------DLKEFEARFREALDDDFNTPKALAV 363 (464)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHhhcccccc----------c--------hhHHHHHHHHHHHHhccCcHHHHHH
Confidence 999999999999999999999999987643322110 0 34556666778876 8999999999
Q ss_pred HHHHHh
Q psy15223 1131 LQIYCS 1136 (2492)
Q Consensus 1131 l~~f~~ 1136 (2492)
|.+++.
T Consensus 364 l~~l~~ 369 (464)
T COG0215 364 LFELAK 369 (464)
T ss_pred HHHHHH
Confidence 999984
No 124
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=1.1e-23 Score=277.67 Aligned_cols=195 Identities=23% Similarity=0.263 Sum_probs=142.1
Q ss_pred eeecccchhhhhHHHHHHHHHHhcCCcccc-EEEEe---eeEEcCCCceeeeccCCccCcchhhhc-cCh----------
Q psy15223 2124 LYLEGSDQHRGWFHSSLLTSIILNKSAPYK-ALLTH---GFVVDSKGKKMSKSKGNIIKPQKLCNL-FGA---------- 2188 (2492)
Q Consensus 2124 l~~~G~D~~r~wf~~~l~~~~~l~~~~pfk-~v~~h---G~vld~~G~KMSKS~GNvi~p~~ii~~-yGa---------- 2188 (2492)
+|+.|.||. +||..+.....++... |.. +++.| |++++.+|+|||||+||+|+|+|++++ +|+
T Consensus 276 i~V~g~~q~-~hf~~~~~~~~~lg~~-~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~ 353 (507)
T PRK01611 276 IYVVGADHH-GHFKRLKAALKALGYD-PDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEI 353 (507)
T ss_pred EEEECCChH-HHHHHHHHHHHHcCCC-cccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhh
Confidence 678889998 6777777666655533 443 55666 899999999999999999999999999 999
Q ss_pred ------hHHHHHHhccCCCCcccccHHHHHHH--------HHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHH
Q psy15223 2189 ------EILRLWVASTDYSKDLSISNEILNRV--------VETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYA 2254 (2492)
Q Consensus 2189 ------D~lR~~l~s~~~~~d~~fs~~~l~~~--------~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~i 2254 (2492)
|++||++++.+..+|++|+++.+... ...+.|+.+.++..... ...+. ......+.|+|+
T Consensus 354 a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvqYa~aR~~sil~k~~~~--~~~~~----~~~l~~~~e~~L 427 (507)
T PRK01611 354 AEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHARICSILRKAAEA--GIDLL----LALLTEEEEKEL 427 (507)
T ss_pred hhhhccceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHHHHHHHHHHHHHhhhcc--Ccccc----ccccCCHHHHHH
Confidence 99999999988999999999987654 33444565555543210 11110 011125789999
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccC-ChHHHHHHHHHHHHHHHHHHHHHh
Q psy15223 2255 IINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK-NSHARRSAQTSIWHINQSLLRLIS 2330 (2492)
Q Consensus 2255 l~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~-~~~~r~~~~~~l~~il~~l~~lLa 2330 (2492)
+.++..+...+.+++++|+++.+++.+++|+ +.|++||=+ . ++-.+.. -...|.........+|...+.||.
T Consensus 428 l~~L~~~~~~v~~a~~~~~p~~l~~yl~~la-~~f~~fY~~-~--~l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLg 500 (507)
T PRK01611 428 IKKLAEFPEVVESAAEELEPHRIANYLYELA-GAFHSFYNR-V--LLKDEEEELRNARLALVKATAQVLKNGLDLLG 500 (507)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH-HHHHHHHHH-C--CCCCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998 789999932 2 2221111 113444455556667777777764
No 125
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=99.91 E-value=1.3e-24 Score=272.65 Aligned_cols=182 Identities=24% Similarity=0.347 Sum_probs=153.5
Q ss_pred cCCCCCCCccccccccc--ccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc
Q psy15223 45 TDSPYLSPIPHRAKLAL--IAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT 122 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~--~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t 122 (2492)
+|..||..|+++|+++. .++++|||||||++|+||++|+|...+ ..|||++||++|++.+ +|||||||
T Consensus 2 ~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~g----~~HAE~~ai~~a~~~~------~g~tlyvT 71 (367)
T PRK10786 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAG----EPHAEVHALRMAGEKA------KGATAYVT 71 (367)
T ss_pred CHHHHHHHHHHHHHhcCcCCCCCCCEEEEEEeCCEEEEEEeCCCCC----CCCHHHHHHHHHhhhc------CCCEEEEe
Confidence 35679999999999985 457999999999999999999998754 5899999999998753 49999999
Q ss_pred CCCh------HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHh---ccC
Q psy15223 123 LEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK---RRN 193 (2492)
Q Consensus 123 ~EPC------~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~---~~~ 193 (2492)
+||| +||++||+++||+|||||+.||+.+..|++...++++++. |..|++++||.++++.||.+ +||
T Consensus 72 lEPC~~~g~t~mC~~aii~agI~rVv~~~~dp~~~~~g~~~~~l~~~gi~----v~~~~~~~e~~~l~~~f~~~~~~~rP 147 (367)
T PRK10786 72 LEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID----VSHGLMMSEAEALNKGFLKRMRTGFP 147 (367)
T ss_pred cCCccCCCCChHHHHHHHHhCCCEEEEecCCCCcccCchHHHHHhcCCcE----EEcCCcHHHHHHHHHHHHHHhhcccc
Confidence 9999 8999999999999999999999999888889999877665 88899999999999999965 789
Q ss_pred cccccccccccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeC
Q psy15223 194 FVKNKSINIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNG 245 (2492)
Q Consensus 194 ~~~~~~a~m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg 245 (2492)
|++.|.|..--.++-. ..|....|++++.+-. +.||.. -|.|.|.-|
T Consensus 148 ~V~~k~A~SlDGkia~----~~g~s~~is~~~~~~~~h~lRa~-~DaIlVGa~ 195 (367)
T PRK10786 148 YIQLKLGASLDGRTAM----ASGESQWITSPQARRDVQRLRAQ-SHAILTSSA 195 (367)
T ss_pred eEEEEEeecCCCCccC----CCCcccccCCHHHHHHHHHHHhH-CCEEEECcC
Confidence 9999999822223322 2466777888777776 999997 477766443
No 126
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=99.91 E-value=2e-24 Score=268.92 Aligned_cols=178 Identities=25% Similarity=0.368 Sum_probs=146.3
Q ss_pred cccCCCCCCCccccccccccc--CCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEE
Q psy15223 43 IETDSPYLSPIPHRAKLALIA--GEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIY 120 (2492)
Q Consensus 43 ~etD~~~M~~a~~~a~~~~~~--~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly 120 (2492)
...|..||+.|+++|+++... +++|||||||++|+||++|+|...+ ..|||++||++|++.+ .|+|||
T Consensus 29 ~~~d~~~M~~Al~lA~~~~~~~~~np~VGaViV~~g~Ii~~g~n~~~g----~~HAEi~Ai~~a~~~~------~g~tly 98 (380)
T PLN02807 29 GDDDSFYMRRCVELARKAIGCTSPNPMVGCVIVKDGRIVGEGFHPKAG----QPHAEVFALRDAGDLA------ENATAY 98 (380)
T ss_pred CchHHHHHHHHHHHHHhhcccCCCCCCEEEEEEECCEEEEEEeCCCCC----CcCHHHHHHHHhhhhc------CCcEEE
Confidence 345678999999999998654 4788999999999999999998754 5899999999998753 489999
Q ss_pred EcCCCh------HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHh---c
Q psy15223 121 VTLEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK---R 191 (2492)
Q Consensus 121 ~t~EPC------~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~---~ 191 (2492)
||+||| |||++||+++||+|||||+.||++++.|++.++++++|+. |..|++++||.+|++.||++ +
T Consensus 99 vTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~~~g~g~~~l~~~gi~----V~~g~~~~e~~~l~~~f~~~~~~~ 174 (380)
T PLN02807 99 VSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGIERLRDAGIE----VTVGVEEELCRKLNEAFIHRMLTG 174 (380)
T ss_pred EEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCccccchHHHHHHhCCCE----EEeCcCHHHHHHHHHHHHHHHhhc
Confidence 999999 8999999999999999999999999889999999998865 88899999999999999965 7
Q ss_pred cCcccccccccccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEE
Q psy15223 192 RNFVKNKSINIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILF 243 (2492)
Q Consensus 192 ~~~~~~~~a~m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~ 243 (2492)
|||++.|+|..--.++-.. .|+.- +.++.. +-||.+ -|.|.|.
T Consensus 175 rP~V~lK~A~SlDGkia~~----~g~s~----~~s~~~vh~lRa~-~DAIlVG 218 (380)
T PLN02807 175 KPFVTLRYSMSMNGCLLNQ----IGEGA----DDAGGYYSQLLQE-YDAVILS 218 (380)
T ss_pred cccEEEEEEEcCCCCeeCC----CCCCh----hhhhHHHHHHHhh-CCEEEEc
Confidence 8999999998222233211 22222 444444 667765 5888886
No 127
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=99.91 E-value=1.5e-24 Score=222.92 Aligned_cols=135 Identities=27% Similarity=0.458 Sum_probs=122.9
Q ss_pred cccCCCCCCCcccccccc--cccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEE
Q psy15223 43 IETDSPYLSPIPHRAKLA--LIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIY 120 (2492)
Q Consensus 43 ~etD~~~M~~a~~~a~~~--~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly 120 (2492)
.+.|..||..|+++|++. ...+|++||||||++|+||++|++...+ .+|||..||++|.... +|+|+|
T Consensus 3 ~~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~~aG----~pHAEv~Al~~ag~~a------~Gat~y 72 (146)
T COG0117 3 SELDERYMERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEKAG----GPHAEVCALRMAGEAA------RGATAY 72 (146)
T ss_pred chHHHHHHHHHHHHHHhcCCcCCCCCceeEEEEECCEEEeeeecCCCC----CCcHHHHHHHHcCccc------CCCEEE
Confidence 346788999999999975 4567999999999999999999998866 6799999999996543 599999
Q ss_pred EcCCCh------HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhc
Q psy15223 121 VTLEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKR 191 (2492)
Q Consensus 121 ~t~EPC------~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~ 191 (2492)
||+||| |+|+.+|+.+||+|||++..||++.+.|.|+..|+++|+. |..|++++|+..+++.|+.+.
T Consensus 73 VTLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~aGi~----V~~gil~~e~~~l~~~f~~~~ 145 (146)
T COG0117 73 VTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAGIE----VEVGILEEEAEKLNEGFLKRM 145 (146)
T ss_pred EEecCcccCCCCcchHHHHHHhCCCEEEEEecCCCccccCchHHHHHHcCCe----EEEehhHHHHHHHHHHHHccc
Confidence 999999 8999999999999999999999999999999999999988 888999999999999998763
No 128
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.90 E-value=4.3e-23 Score=253.60 Aligned_cols=122 Identities=19% Similarity=0.273 Sum_probs=95.5
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccC--------CchHHHHHHHHhCcCC--CH
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCH--------GMPIEIQIEKLYGKNL--SP 517 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~h--------GlpiE~~a~k~~~~~~--~~ 517 (2492)
++++|++.+|++ |||.+||||++.++..|+++||+||+|++|.|+.|||+| |+|-+ +++.+|..+ -|
T Consensus 17 ~~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~--~~~~~G~pi~~ip 93 (353)
T cd00674 17 GKEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES--YEQYIGMPLSSVP 93 (353)
T ss_pred CCCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH--HHHhcCccchhch
Confidence 346799988885 999999999999999999999999999999999999999 56665 555555422 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCC-hHHHHHHHHHHHHHHHcCCe
Q psy15223 518 IEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD-FLNEANELRAFGIIFKKGYV 576 (2492)
Q Consensus 518 ~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d-~~y~~~~~~~f~~l~~kGli 576 (2492)
..+ ..|.+|++++.+.+++.|++|||++| .|.|++ ...-.....++..|.+++.|
T Consensus 94 ~p~-g~~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I 149 (353)
T cd00674 94 DPF-GCCESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEI 149 (353)
T ss_pred hhc-CCCHHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChH
Confidence 222 34667999999999999999999776 344444 44446777777777777665
No 129
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.90 E-value=4.6e-23 Score=253.36 Aligned_cols=122 Identities=19% Similarity=0.291 Sum_probs=95.1
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccC--------ChHHHHHHHHHhccCC--CH
Q psy15223 1598 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCH--------GMPIEIQIEKLYGKNL--SP 1667 (2492)
Q Consensus 1598 ~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~h--------GlPie~~a~k~~~~~~--~~ 1667 (2492)
++++|+|+.|++ |||.+||||++.++..|+++||.||+|++|.|+.|||.| |+|-+ +++.+|..+ -|
T Consensus 17 ~~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~--~~~~~G~pi~~ip 93 (353)
T cd00674 17 GKEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES--YEQYIGMPLSSVP 93 (353)
T ss_pred CCCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH--HHHhcCccchhch
Confidence 346799988885 999999999999999999999999999999999999999 56665 455555421 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCC-hHHHHHHHHHHHHHHhCCce
Q psy15223 1668 IEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD-FLNEANELRAFGIIFKKGYV 1726 (2492)
Q Consensus 1668 ~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d-~~y~~~~~~~F~~L~~kGli 1726 (2492)
..+ ..|.+|++++.+.+++.|++||+++|+ |.|++ ...-.+.+.++..|.+++.|
T Consensus 94 ~p~-g~~~~~~d~~~~~f~~~l~~lgi~~d~---~~~T~~y~~g~~~~~i~~~L~~~~~I 149 (353)
T cd00674 94 DPF-GCCESYAEHFERPFEESLEKLGIEVEF---ISQSQMYKSGLYDENILIALEKRDEI 149 (353)
T ss_pred hhc-CCCHHHHHHHHHHHHHHHHHcCCeeee---eecCCchhhchHHHHHHHHHHHCChH
Confidence 222 235579999999999999999998863 44444 44447777888888777665
No 130
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.90 E-value=1.7e-23 Score=263.05 Aligned_cols=175 Identities=25% Similarity=0.340 Sum_probs=144.1
Q ss_pred CCCccccccccccc--CCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCCh-
Q psy15223 50 LSPIPHRAKLALIA--GEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPC- 126 (2492)
Q Consensus 50 M~~a~~~a~~~~~~--~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC- 126 (2492)
|+.|+++|+++... +++|||||||+||+||++|+|... ++.|||++||++|.+++ +|||||||+|||
T Consensus 1 m~~a~~~a~~~~~~~~~~~~vGaviv~~~~ii~~g~n~~~----~~~HAE~~ai~~a~~~~------~g~tlyvtlEPC~ 70 (344)
T TIGR00326 1 MNRALDLAKKGQGTTHPNPLVGCVIVKNGEIVGEGAHQKA----GEPHAEVHALRQAGENA------KGATAYVTLEPCS 70 (344)
T ss_pred CHHHHHHHHhcCCCCCCCCCEEEEEEeCCEEEEEeeCCCC----CCCCHHHHHHHHhcccc------CCcEEEEeCCCCC
Confidence 67888999988654 688999999999999999999864 48999999999998753 499999999999
Q ss_pred -----HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHh---ccCccccc
Q psy15223 127 -----AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK---RRNFVKNK 198 (2492)
Q Consensus 127 -----~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~---~~~~~~~~ 198 (2492)
|||++||+++||+|||||+.||+.+..|++..++++.++. |..|++++||.+|++.||.+ +|||++.|
T Consensus 71 ~~g~~~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~----v~~~~~~~e~~~l~~~f~~~~~~~rP~v~~~ 146 (344)
T TIGR00326 71 HQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLKQAGIE----VTFGILKEEAERLNKGFLKRMRTGLPYVQLK 146 (344)
T ss_pred CCCCCcHHHHHHHHcCCCEEEEEeCCCCccccchHHHHHhcCCcE----EEeCCCHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 8999999999999999999999999888899999988764 78899999999999999965 67999999
Q ss_pred ccccccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEE
Q psy15223 199 SINIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILF 243 (2492)
Q Consensus 199 ~a~m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~ 243 (2492)
.|. ++ .-|+... .|..-.+++++.+.. +.+|-+ -|.|.+.
T Consensus 147 ~a~-SL-DG~Ia~~--~g~~~wi~~~~~~~~~~~lra~-~DailvG 187 (344)
T TIGR00326 147 LAA-SL-DGKIATA--SGESKWITSEAARTDAQQLRAQ-SDAILVG 187 (344)
T ss_pred Eee-CC-CCCcccc--CCCccccCCHHHHHHHHHHHHH-CCEEEEC
Confidence 998 33 2333322 333345666665554 888875 5666653
No 131
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.88 E-value=5.5e-22 Score=227.81 Aligned_cols=179 Identities=43% Similarity=0.780 Sum_probs=154.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy15223 1056 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 1135 (2492)
Q Consensus 1056 fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~ 1135 (2492)
|+.+.++++.+.++|+||++||+++++.++++.........+...|+|++++++++++++.++|++|+|++|++.+++|+
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~ 80 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFC 80 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 57889999999999999999999998887765422112245678999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCC
Q psy15223 1136 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKL 1215 (2492)
Q Consensus 1136 ~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~ 1215 (2492)
++++|++|++..|+|+|++..++..+++++++++.+++.++++|+|||||+|||+|+.|+.. .+.+||+.+.||+.
T Consensus 81 ~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~----~~~~~v~~~~wP~~ 156 (180)
T cd07960 81 TVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGE----KKEESVFLEDWPEL 156 (180)
T ss_pred HHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhcccc----CCCCCeeccCCCCC
Confidence 98999999999999999865555556788999999999999999999999999999999752 12368999999998
Q ss_pred cccCCchHHHHHHHHHHHHHHHH
Q psy15223 1216 PKVYNSKKLLYKYMILKKIRSKV 1238 (2492)
Q Consensus 1216 ~~~~~~~~~~~~~~~~~~lr~~v 1238 (2492)
++...+.+++..++.++++|..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~i~~~~ 179 (180)
T cd07960 157 PEEWKDEELEEKWEKLLALRDEV 179 (180)
T ss_pred cccccCHHHHHHHHHHHHHHHhh
Confidence 77667778889999999888765
No 132
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=99.88 E-value=8.2e-23 Score=212.87 Aligned_cols=105 Identities=44% Similarity=0.727 Sum_probs=96.3
Q ss_pred CCCcccccccccccCCcceeeeeeeC-CEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHh
Q psy15223 50 LSPIPHRAKLALIAGEVPVGAVLVKN-NLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAM 128 (2492)
Q Consensus 50 M~~a~~~a~~~~~~~~~pvGaviv~~-~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~m 128 (2492)
|+.++++|+++...++.|||||||++ |+||+.|+|....++|++.|||++||+++.++++...+. |++||||+|||+|
T Consensus 1 m~~al~~a~~~~~~~~~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~~~~~-~~~ly~t~EPC~m 79 (109)
T cd01285 1 MRLAIELARKALAEGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLS-GCTLYTTLEPCPM 79 (109)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCCCccC-CeEEEEeCCChHH
Confidence 56778899999999999999999965 999999999999889999999999999999998776665 9999999999999
Q ss_pred HHHHHHHhCCceEEEecCCCCCCccch
Q psy15223 129 CAGAIIHVRLGEIIYGTPSFKTGACGS 155 (2492)
Q Consensus 129 C~~ai~~~gi~rvv~g~~~~~~~~~g~ 155 (2492)
|++||+|+||+||||+..+++.|+.+.
T Consensus 80 C~~ai~~~gi~~Vvy~~~~~~~g~~~~ 106 (109)
T cd01285 80 CAGALLWARIKRVVYGASDPKLGGIGF 106 (109)
T ss_pred HHHHHHHHCCCEEEEEecCCccccccc
Confidence 999999999999999999998776554
No 133
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.88 E-value=1.3e-21 Score=224.61 Aligned_cols=179 Identities=43% Similarity=0.780 Sum_probs=153.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy15223 2206 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 2285 (2492)
Q Consensus 2206 fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~ 2285 (2492)
++.+.++++.+.++|+||++||+++++.++++.............|+|+++++++++++++++|++|+|++|++.+++|+
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~ 80 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFC 80 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56788999999999999999999988877654321111235678999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCC
Q psy15223 2286 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKL 2365 (2492)
Q Consensus 2286 ~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~ 2365 (2492)
++++|++||+.+|+|+|+...++..+.+++.+++.+++.++++|+|||||+|||+|+.|++. .+.+||+.++||+.
T Consensus 81 ~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~----~~~~~v~~~~wP~~ 156 (180)
T cd07960 81 TVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGE----KKEESVFLEDWPEL 156 (180)
T ss_pred HHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhcccc----CCCCCeeccCCCCC
Confidence 98999999999999999764444456678899999999999999999999999999999752 12368999999998
Q ss_pred CccCCCHHHHHHHHHHHHHHHHH
Q psy15223 2366 PKVYNSKKLLYKYMILKKIRSKV 2388 (2492)
Q Consensus 2366 ~~~~~~~~l~~~~~~~~~~r~~v 2388 (2492)
+..+.+++++..|+.++++|..|
T Consensus 157 ~~~~~~~~~~~~~~~~~~i~~~~ 179 (180)
T cd07960 157 PEEWKDEELEEKWEKLLALRDEV 179 (180)
T ss_pred cccccCHHHHHHHHHHHHHHHhh
Confidence 88788888899999998888765
No 134
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.87 E-value=9.4e-23 Score=240.12 Aligned_cols=126 Identities=20% Similarity=0.232 Sum_probs=98.2
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHH
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARAL 527 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~ 527 (2492)
++-+.+++-|.+| ..+|||||++++.-|++.||.+..||+|.|+.+.-.-.=.|-.+|.+. +.++.+ +
T Consensus 7 ~~v~~Y~CGPTVY--d~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~---g~~~~e-------l 74 (300)
T PF01406_consen 7 GKVRMYVCGPTVY--DYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREE---GVSPQE-------L 74 (300)
T ss_dssp TEEEEEEEEEBTT--S--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHT---TS-HHH-------H
T ss_pred CeEEEEcCCCCCC--CCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhc---cCCHHH-------H
Confidence 3345666666666 899999999999999999999999999999999998888888888876 778777 8
Q ss_pred HHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeC-cccccCCC
Q psy15223 528 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGL-KPVNWCFD 588 (2492)
Q Consensus 528 a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~-~pv~w~p~ 588 (2492)
+.++.+.+.+++++|||.-...-+. --++...++....+|.++|+.|... .-||++.+
T Consensus 75 a~~y~~~f~~dm~~Lnv~~p~~~pr---ate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~ 133 (300)
T PF01406_consen 75 ARRYEEEFFEDMKALNVLPPDHYPR---ATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVS 133 (300)
T ss_dssp HHHHHHHHHHHHHHTT----SEEEE---GGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CC
T ss_pred HHHHHHHHHHHHHHcCCCCCccccc---hhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeec
Confidence 8889999999999999965322233 3478889999999999999999998 88887765
No 135
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.87 E-value=2.8e-22 Score=236.17 Aligned_cols=126 Identities=21% Similarity=0.244 Sum_probs=98.0
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHH
Q psy15223 1598 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARAL 1677 (2492)
Q Consensus 1598 ~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~ 1677 (2492)
++-+.|++-|.+| ..+||||+++++.-|++.||.+..||+|.|+++.-.--=.|-.+|.+. ++++.+ +
T Consensus 7 ~~v~~Y~CGPTVY--d~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~---g~~~~e-------l 74 (300)
T PF01406_consen 7 GKVRMYVCGPTVY--DYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREE---GVSPQE-------L 74 (300)
T ss_dssp TEEEEEEEEEBTT--S--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHT---TS-HHH-------H
T ss_pred CeEEEEcCCCCCC--CCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhc---cCCHHH-------H
Confidence 3445677665555 889999999999999999999999999999999999988998888876 778776 7
Q ss_pred HHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeC-cccccCCC
Q psy15223 1678 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGL-KPVNWCFD 1738 (2492)
Q Consensus 1678 ~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~-~~v~wcp~ 1738 (2492)
+.++.+.+.+++++||+.-...-+..| ++...+...-.+|.++|+.|... ..||++..
T Consensus 75 a~~y~~~f~~dm~~Lnv~~p~~~prat---e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~ 133 (300)
T PF01406_consen 75 ARRYEEEFFEDMKALNVLPPDHYPRAT---EHIPEIIELIEKLIDKGHAYESEDGSVYFDVS 133 (300)
T ss_dssp HHHHHHHHHHHHHHTT----SEEEEGG---GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CC
T ss_pred HHHHHHHHHHHHHHcCCCCCccccchh---ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeec
Confidence 888999999999999996543333333 68888999999999999999998 88887764
No 136
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.87 E-value=1.8e-21 Score=224.13 Aligned_cols=178 Identities=17% Similarity=0.323 Sum_probs=145.2
Q ss_pred cCHHHHHHHHH-HHHHHHHHHHHHhh--cCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q psy15223 1056 ISNEILNRVVE-TYRRIRNTLRFLLA--NTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQ 1132 (2492)
Q Consensus 1056 fs~~~l~~~~~-~~~kl~n~~rf~l~--~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~ 1132 (2492)
||++.+++..+ +++||||++||+++ ++.++++.....+...+...|+|+++++++++++++++|++|+|++|++.++
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~ 80 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL 80 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 57888888888 99999999999987 5556654422222344678999999999999999999999999999999999
Q ss_pred HHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccC
Q psy15223 1133 IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLH 1212 (2492)
Q Consensus 1133 ~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~w 1212 (2492)
.|++ .++++|++.+|+++|+.. ++..+++++.++..++..++++|+||+||+|||+|+++++.. ....+||+.+.|
T Consensus 81 ~f~~-~~~~~Y~e~~K~~~~~~~-~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~--~~~~~si~~~~w 156 (183)
T cd07961 81 EFID-ELTNWYIRRNRKRFWGEE-GDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRREL--GDAPESVHLLDW 156 (183)
T ss_pred HHHH-HhhhhHhhhchHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc--CCCCCceeeecC
Confidence 9997 566999999999999865 345677899999999999999999999999999999997420 011368999999
Q ss_pred CCCcccCCchHHHHHHHHHHHHHHH
Q psy15223 1213 YKLPKVYNSKKLLYKYMILKKIRSK 1237 (2492)
Q Consensus 1213 p~~~~~~~~~~~~~~~~~~~~lr~~ 1237 (2492)
|..++.+.+..++..++.+.++.+.
T Consensus 157 P~~~~~~~~~~~~~~~~~l~~~i~~ 181 (183)
T cd07961 157 PEVDESLIDEELEEAMELVREIVEL 181 (183)
T ss_pred CCCcccccCHHHHHHHHHHHHHHHh
Confidence 9977655566666777777655443
No 137
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=99.87 E-value=2.6e-22 Score=222.30 Aligned_cols=130 Identities=25% Similarity=0.322 Sum_probs=106.6
Q ss_pred cCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccC--------------------------------CCC
Q psy15223 45 TDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITR--------------------------------NDP 92 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~--------------------------------~~~ 92 (2492)
+|..||..|..+|++| ..++.|||||||++|+||++|+|+.+.+ .++
T Consensus 2 ~d~~fM~~A~~~A~~s-~~~~~~VGAVIV~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PHA02588 2 KDSTYLQIAYLVSQES-KCVSWKVGAVIEKNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSKN 80 (168)
T ss_pred CHHHHHHHHHHHHHhc-CCCCCCEEEEEEECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCCC
Confidence 4667999999999998 5678999999999999999999998754 367
Q ss_pred CCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEe
Q psy15223 93 TAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILT 172 (2492)
Q Consensus 93 ~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~ 172 (2492)
+.|||++||++|.+.. ..+ .|+|||||+|||+||++||+++||+||||+...+.. .+.+..+|++.|++. .
T Consensus 81 ~~HAE~nAi~~a~~~~--~~~-~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~--~~~~~~~L~~~Gi~v----~ 151 (168)
T PHA02588 81 EIHAELNAILFAARNG--ISI-EGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDRN--GPGWDDILRKSGIEV----I 151 (168)
T ss_pred CccHHHHHHHHHhhcC--CCC-CCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCCC--cHHHHHHHHHCCCEE----E
Confidence 8899999999998753 234 499999999999999999999999999999874333 234688999999973 2
Q ss_pred ccccHHHHHHHHH
Q psy15223 173 GGVMQKQCEKLLK 185 (2492)
Q Consensus 173 ~gv~~~e~~~l~~ 185 (2492)
.+..+++.+++.
T Consensus 152 -~~~~~~~~~~~~ 163 (168)
T PHA02588 152 -QIPKEELNKLNW 163 (168)
T ss_pred -EeCHHHHHhhhh
Confidence 245677666653
No 138
>KOG2007|consensus
Probab=99.86 E-value=2.8e-20 Score=222.91 Aligned_cols=171 Identities=15% Similarity=0.162 Sum_probs=150.3
Q ss_pred ceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccCCC
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYS 2201 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~~~ 2201 (2492)
.|+|-+|.|+.|+|+.+.++++.+.+...+|-+.++|...|..+|+|||||++|+|++.+++++|.+++||++++++.|.
T Consensus 259 lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr 338 (586)
T KOG2007|consen 259 LDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWR 338 (586)
T ss_pred cceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhc
Confidence 59999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHH
Q psy15223 2202 KDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMIVSK 2280 (2492)
Q Consensus 2202 ~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~a~~~ 2280 (2492)
++++|+...+..+.+....+.|++..+........ +...+++.+..++..+......|..++ ++++...++..
T Consensus 339 ~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~~------~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~ 412 (586)
T KOG2007|consen 339 SPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAK------PFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEA 412 (586)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc------hhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHH
Confidence 99999999999888887777777765443322211 134677889999999999999999987 69999999999
Q ss_pred HHHHHHhhhhhhHHHhhhhh
Q psy15223 2281 LQIYCSEDLGSFYLDILKDR 2300 (2492)
Q Consensus 2281 l~~f~~~~ls~~Yle~~K~~ 2300 (2492)
+.+++ ..+|.|+.....+
T Consensus 413 ~~~lv--s~~N~~i~~~~~~ 430 (586)
T KOG2007|consen 413 IRELV--SQGNAYIRESGER 430 (586)
T ss_pred HHHHH--hhhhHHHHHhccc
Confidence 99999 5689999876643
No 139
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=99.86 E-value=5.7e-22 Score=205.70 Aligned_cols=106 Identities=26% Similarity=0.425 Sum_probs=95.7
Q ss_pred CCCcccccccc--cccCCcceeeeeeeC-CEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCCh
Q psy15223 50 LSPIPHRAKLA--LIAGEVPVGAVLVKN-NLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPC 126 (2492)
Q Consensus 50 M~~a~~~a~~~--~~~~~~pvGaviv~~-~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC 126 (2492)
|..|+++|+++ ...++.|||||||++ |+||++|+|+.. ++.|||++||++|.++ .+ +|+|||||+|||
T Consensus 1 m~~al~~A~~~~~~~~~~~pvGaviv~~~g~iv~~g~n~~~----~~~HAE~~ai~~a~~~----~l-~g~tly~TlEPC 71 (115)
T cd01284 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRKA----GGPHAEVNALASAGEK----LA-RGATLYVTLEPC 71 (115)
T ss_pred CHHHHHHHHhcccccCCCCCEEEEEEeCCCeEEEEecCCCC----CcccHHHHHHHHHhhc----CC-CCeEEEEeCCCC
Confidence 56788899998 788999999999965 999999999875 7999999999999985 34 489999999999
Q ss_pred ------HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcC
Q psy15223 127 ------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKK 164 (2492)
Q Consensus 127 ------~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~ 164 (2492)
|||++||+|+||+|||||..+|+.+..++++.++++.|
T Consensus 72 ~~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~~~~~g~~~l~~~g 115 (115)
T cd01284 72 SHHGKTPPCVDAIIEAGIKRVVVGVRDPNPLVAGKGAERLRAAG 115 (115)
T ss_pred CCCCCchHHHHHHHHHCcCEEEEEecCCCcccccHHHHHHHHCc
Confidence 89999999999999999999999988888999888764
No 140
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.86 E-value=7e-21 Score=219.28 Aligned_cols=174 Identities=17% Similarity=0.330 Sum_probs=142.3
Q ss_pred ccHHHHHHHHH-HHHHHHHHHHHHHh--cCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q psy15223 2206 ISNEILNRVVE-TYRRIRNTLRFLLA--NTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQ 2282 (2492)
Q Consensus 2206 fs~~~l~~~~~-~~~kl~n~~r~~~~--~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~ 2282 (2492)
||++.+++..+ +++||||++||+++ ++.++.+.....+...+...|+|+++++++++++++++|++|+|+.|++.++
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~ 80 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL 80 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 67888988888 99999999999986 5555544321122234678999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccC
Q psy15223 2283 IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLH 2362 (2492)
Q Consensus 2283 ~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~w 2362 (2492)
.|++ .++++|++.+|+++|+.. ++..+++++.++.+++..++++|+|||||+|||+|+++++.. ..+.+||+.++|
T Consensus 81 ~f~~-~~~~~Y~e~~K~~~~~~~-~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~--~~~~~si~~~~w 156 (183)
T cd07961 81 EFID-ELTNWYIRRNRKRFWGEE-GDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRREL--GDAPESVHLLDW 156 (183)
T ss_pred HHHH-HhhhhHhhhchHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc--CCCCCceeeecC
Confidence 9997 566999999999999865 334567789999999999999999999999999999997520 012358999999
Q ss_pred CCCCccCCCHHHHHHHHHHHH
Q psy15223 2363 YKLPKVYNSKKLLYKYMILKK 2383 (2492)
Q Consensus 2363 P~~~~~~~~~~l~~~~~~~~~ 2383 (2492)
|+.++.+.++.++..++.+.+
T Consensus 157 P~~~~~~~~~~~~~~~~~l~~ 177 (183)
T cd07961 157 PEVDESLIDEELEEAMELVRE 177 (183)
T ss_pred CCCcccccCHHHHHHHHHHHH
Confidence 998776767777766666654
No 141
>KOG1018|consensus
Probab=99.86 E-value=3.9e-22 Score=217.98 Aligned_cols=154 Identities=36% Similarity=0.582 Sum_probs=134.3
Q ss_pred cccccCCCCCCCcccccccccccC-Ccceeeeeee-CCEEEEEEEcCCccCCCCCCcHHHHHHHH---HHHhccCcccCC
Q psy15223 41 MLIETDSPYLSPIPHRAKLALIAG-EVPVGAVLVK-NNLVISYGYNQQITRNDPTAHAEIIALRM---ASKLLNNYRFSK 115 (2492)
Q Consensus 41 ~~~etD~~~M~~a~~~a~~~~~~~-~~pvGaviv~-~~~ii~~g~n~~~~~~~~~~HaE~~ai~~---a~~~~~~~~l~~ 115 (2492)
.+.+.|..||..|.++|.++.+.+ +.|||||+|+ +|+|++.|+|.+....|+|.|||+.||+. .++.+..+.+.
T Consensus 6 ~~~~~~~~~m~~a~eea~ka~d~~~~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~~~~~ls- 84 (169)
T KOG1018|consen 6 ELSDHDIAFMVEAVEEAKKALDEGDEVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSLRTIDLS- 84 (169)
T ss_pred hcccccHHHHHHHHHHHHhhccCCCCCceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhhHHHHhhhcCceecc-
Confidence 455678899999999999999999 9999999998 99999999999989999999999999999 88888777776
Q ss_pred CeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhh--cCCCceeEEeccccHHHHHHHHHHHHHhccC
Q psy15223 116 NYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQE--KKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 193 (2492)
Q Consensus 116 ~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~--~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~ 193 (2492)
++|+|||+|||+||++||.++||++||||+.+++.+..+........ +.+.+.+....|+..+++..++..|+-+.++
T Consensus 85 ~~tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~f~~~~n~ 164 (169)
T KOG1018|consen 85 ETTLYVTCEPCPMCAGALAQSGVKRVVFGASNERFGGIGFVLRGNKDFLKRLGASVISRDGIEKKEAQKLLIAFYVRDNP 164 (169)
T ss_pred CCEEEEEecccHHHHHHHHHcCCCEEEEecccccccccceeeeehhhhhccCCcceEeccchhhHHhhhHHHhhcccccc
Confidence 89999999999999999999999999999999999887665544332 2455667788899999998999999877555
Q ss_pred cc
Q psy15223 194 FV 195 (2492)
Q Consensus 194 ~~ 195 (2492)
..
T Consensus 165 ~~ 166 (169)
T KOG1018|consen 165 KD 166 (169)
T ss_pred CC
Confidence 43
No 142
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=99.85 E-value=8.2e-22 Score=214.07 Aligned_cols=118 Identities=26% Similarity=0.389 Sum_probs=100.8
Q ss_pred ccCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCC---------------CCCCcHHHHHHHHHHHhc
Q psy15223 44 ETDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRN---------------DPTAHAEIIALRMASKLL 108 (2492)
Q Consensus 44 etD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~---------------~~~~HaE~~ai~~a~~~~ 108 (2492)
..|..||..|..+|+++ ..++.|||||||+||+||++|+|+...+. +++.|||++||++|++..
T Consensus 4 ~~d~~fM~~A~~~A~rs-~~~~~~VGAVIV~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a~~~~ 82 (151)
T TIGR02571 4 KWDQYFMAQSHLLALRS-TCTRLSVGATIVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAKFG 82 (151)
T ss_pred cHHHHHHHHHHHHHHhc-CCCCCCEEEEEEECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHHHhcC
Confidence 35667999999999988 67789999999999999999999987654 578999999999998643
Q ss_pred cCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCce
Q psy15223 109 NNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHH 168 (2492)
Q Consensus 109 ~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~ 168 (2492)
..+ +|++||||+|||+||+++|+++||+||||+..+++.. .+..++++.|+..+
T Consensus 83 --~~l-~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~---~~~~~l~~~gi~v~ 136 (151)
T TIGR02571 83 --VST-EGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNHP---YAIELFEQAGVELK 136 (151)
T ss_pred --CCc-CCcEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCCcH---HHHHHHHHCCCEEE
Confidence 244 4999999999999999999999999999997654432 36889999999854
No 143
>KOG2007|consensus
Probab=99.85 E-value=1.1e-19 Score=217.96 Aligned_cols=173 Identities=14% Similarity=0.148 Sum_probs=150.9
Q ss_pred eeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcc
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYS 1051 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~ 1051 (2492)
.|+|-+|.|+.++|+.+.+.++.+.....+|-++++|-..|..+|+|||||++|+|+..+++++|.+++||++++++.|.
T Consensus 259 lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr 338 (586)
T KOG2007|consen 259 LDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWR 338 (586)
T ss_pred cceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhc
Confidence 59999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH-hccchHHHHHH
Q psy15223 1052 KDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMIVSK 1130 (2492)
Q Consensus 1052 ~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-~~~~f~~a~~~ 1130 (2492)
++++||.+.+..+.+....+.|++.-+......- .+.+.+++.+..++..+.....++..++ ++++...+++.
T Consensus 339 ~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~------~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~ 412 (586)
T KOG2007|consen 339 SPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGA------KPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEA 412 (586)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc------chhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHH
Confidence 9999999999988888777877776544333221 1144577888999999999999998886 69999999999
Q ss_pred HHHHHhhhhhhhHHHhhhhhhc
Q psy15223 1131 LQIYCSEDLGSFYLDILKDRLY 1152 (2492)
Q Consensus 1131 l~~f~~~~ls~~Yl~~~Kdrl~ 1152 (2492)
+.+++ ..+|.|+.....+++
T Consensus 413 ~~~lv--s~~N~~i~~~~~~~~ 432 (586)
T KOG2007|consen 413 IRELV--SQGNAYIRESGERPN 432 (586)
T ss_pred HHHHH--hhhhHHHHHhccccc
Confidence 99999 458999987764443
No 144
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.83 E-value=1.8e-20 Score=244.52 Aligned_cols=101 Identities=27% Similarity=0.387 Sum_probs=86.1
Q ss_pred Cceeeecccchhh-hhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHh-cc
Q psy15223 2121 PADLYLEGSDQHR-GWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-ST 2198 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r-~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~-s~ 2198 (2492)
-+|+-..|+||+. .|..+..+...++....|+. ++|||+++.+|+|||||+||+|+|.|+++.||+|++|||++ +.
T Consensus 234 ~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~--~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~ 311 (510)
T PRK00750 234 GVDFEPFGKDHASASYDTSKKIAREILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARP 311 (510)
T ss_pred CCCEEeeCcccCcchHHHHHHHHHHHcCCCCCee--eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCC
Confidence 4788899999999 88776666555777777765 78999998889999999999999999999999999998887 56
Q ss_pred CCCCcccccHHHHHHHHHHHHHHHHHH
Q psy15223 2199 DYSKDLSISNEILNRVVETYRRIRNTL 2225 (2492)
Q Consensus 2199 ~~~~d~~fs~~~l~~~~~~~~kl~n~~ 2225 (2492)
++.++++|+. +.++.+.+.++.+.+
T Consensus 312 ~~~~~~~f~~--l~~~~dey~rl~~~~ 336 (510)
T PRK00750 312 KPAKRLDFDV--IPKLVDEYDRFERKY 336 (510)
T ss_pred CCCCCCcccH--HHHHHHHHHHHHHHH
Confidence 7889999998 777778888777665
No 145
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.83 E-value=4e-20 Score=241.20 Aligned_cols=101 Identities=27% Similarity=0.387 Sum_probs=87.1
Q ss_pred Ceeeeecccccch-hhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhh-cc
Q psy15223 971 PADLYLEGSDQHR-GWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-ST 1048 (2492)
Q Consensus 971 p~Dl~~~G~D~~r-gwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~-s~ 1048 (2492)
-+|+-..|+||+. .|..+..+...++....|+. ++|||+++.+|+|||||+||+|+|.|+++.||+|++|||++ +.
T Consensus 234 ~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~--~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~ 311 (510)
T PRK00750 234 GVDFEPFGKDHASASYDTSKKIAREILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARP 311 (510)
T ss_pred CCCEEeeCcccCcchHHHHHHHHHHHcCCCCCee--eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCC
Confidence 4788899999999 88777766665777778866 78999998889999999999999999999999999998887 56
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHH
Q psy15223 1049 DYSKDLSISNEILNRVVETYRRIRNTL 1075 (2492)
Q Consensus 1049 ~~~~d~~fs~~~l~~~~~~~~kl~n~~ 1075 (2492)
.+.+|++|+. +.++.+.|.++.+.+
T Consensus 312 ~~~~~~~f~~--l~~~~dey~rl~~~~ 336 (510)
T PRK00750 312 KPAKRLDFDV--IPKLVDEYDRFERKY 336 (510)
T ss_pred CCCCCCcccH--HHHHHHHHHHHHHHH
Confidence 7889999998 777777888776665
No 146
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.82 E-value=1.6e-20 Score=209.70 Aligned_cols=161 Identities=26% Similarity=0.344 Sum_probs=108.0
Q ss_pred cceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHH
Q psy15223 1755 DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCL 1834 (2492)
Q Consensus 1755 ~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~ 1834 (2492)
|....|.|++.+. +..|.|+||||+||+|.++||++|+++.+..- .--...+.++.
T Consensus 7 S~G~~i~F~i~~~---------------~~~i~vFTTrpdTifGvtfials~~H~lv~~l---------~~~~~~l~~fi 62 (185)
T PF13603_consen 7 SEGAEIDFKIKGS---------------NEKIEVFTTRPDTIFGVTFIALSPEHPLVKKL---------AENNPELQEFI 62 (185)
T ss_dssp EEEEEEEEEBTTS---------------SCEEEEEES-GGGGGG--EEEEETTSCHHHHC---------TTTHHHHHHHH
T ss_pred cccEEEEEEecCC---------------CCEEEEEECCcchhhCceEEEECCCCHHHHhh---------hhhhhhHHHHH
Confidence 4567788887542 34899999999999999999999999743211 11122333343
Q ss_pred HHcCCcCc-e----EEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCC
Q psy15223 1835 KKFGFKGN-I----IGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMK 1909 (2492)
Q Consensus 1835 ~~~~~~~~-~----v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~ 1909 (2492)
++...... . ..+..|. +.|.++.||++ ++++||+.++||.+++|||+||++|+|+.+||++|++|+||
T Consensus 63 ~~~~~~~~~~~~~~~~~k~Gv-~tg~~aihP~t------~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lp 135 (185)
T PF13603_consen 63 EKCKKIKNSERNKDFKEKEGV-FTGLYAIHPLT------GKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLP 135 (185)
T ss_dssp HHHHTS-HHHHHHCSSS--EE-EEEEEEE-TTT------S-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT--
T ss_pred HHHhcCCHhHhhhhccccccC-cCCCEEECCCC------CCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCC
Confidence 33221110 0 0234565 77889999999 99999999999999999999999999999999999999997
Q ss_pred CCCcccccCC-------------CCccccCCCCCCCccHHhhhHHHHHHHH
Q psy15223 1910 DSDIINPVMD-------------DGNFISTLPLFGGMSIWKASKLICSYLK 1947 (2492)
Q Consensus 1910 ~~~~~~~vd~-------------~G~~~~~~~~~~G~~v~~a~~~i~~~L~ 1947 (2492)
..+++.+.+. +|.+. ++++|.||+..+|+++|++.|+
T Consensus 136 i~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS~~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 136 IKQVIKPKDDNEEIDNKQEAYTGDGILI-NSGEFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp ----EEBSSSS---STTSS---S--EE--SSGGGTTSBHHHHHHHHHHHHH
T ss_pred eeEEEcCCCCcccccccccCcCCCEEEE-eCCCCCCCCHHHHHHHHHHHhC
Confidence 7666666553 47776 6789999999999999999985
No 147
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.81 E-value=2.4e-20 Score=199.58 Aligned_cols=101 Identities=31% Similarity=0.444 Sum_probs=88.1
Q ss_pred CCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCcc---------------------CCCCCCcHHHHHHHHH
Q psy15223 46 DSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQIT---------------------RNDPTAHAEIIALRMA 104 (2492)
Q Consensus 46 D~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~---------------------~~~~~~HaE~~ai~~a 104 (2492)
|..||..|..+|+++. .++.|||||||++|+||++|+|+..+ ..+++.|||++||++|
T Consensus 1 d~~~m~~A~~~A~~s~-~~~~~VGAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~a 79 (131)
T cd01286 1 DEYFMAIARLAALRST-CPRRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQA 79 (131)
T ss_pred CHHHHHHHHHHHHHcC-CCCCCEEEEEEECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHHH
Confidence 4568999999998874 57899999999999999999999863 4578999999999999
Q ss_pred HHhccCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCC
Q psy15223 105 SKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKT 150 (2492)
Q Consensus 105 ~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~ 150 (2492)
.++ ...+ .|++||||+|||+||+.+|+++||+||||+...+..
T Consensus 80 ~~~--~~~~-~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~~ 122 (131)
T cd01286 80 ARH--GVSL-EGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDDD 122 (131)
T ss_pred hHc--CCCc-CCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCcc
Confidence 886 2344 489999999999999999999999999999877653
No 148
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.78 E-value=2.4e-18 Score=192.86 Aligned_cols=153 Identities=24% Similarity=0.452 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhc
Q psy15223 1101 DKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLIS 1180 (2492)
Q Consensus 1101 D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLa 1180 (2492)
|+|++++++++++++.++|++|+|++|++.+++|++++||++|++.+|+++|++..++. |+ ++.+++.+++.++++|+
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~-~~-~~~~l~~~l~~~~~ll~ 78 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDES-RE-AQYTLYEILKILLILLS 78 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHH-HH-HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhH-HH-HHHHHHHHHHHHhhccC
Confidence 89999999999999999999999999999999998899999999999999999877666 66 99999999999999999
Q ss_pred ccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEE
Q psy15223 1181 PILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEII 1260 (2492)
Q Consensus 1181 PilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~ 1260 (2492)
|||||+|||+|++|... .....+||+.+.||. .....+... + +...++...+.+.++..|+.+.++++.+.+|+
T Consensus 79 P~~P~~aEeiw~~l~~~--~~~~~~si~~~~~p~-~~~~~~~~~-~--~~~~~~~~~v~~~i~~~r~~~~i~~~~~~~v~ 152 (153)
T PF08264_consen 79 PFMPFIAEEIWQRLKSE--KLGEKSSIFLEKWPE-DPEFIDEEL-E--EEAFEILKEVVQVIRKIRKEKNIKPKEPLKVV 152 (153)
T ss_dssp TTSHHHHHHHHHHCTTH--HTTSSSSGGGS------GGGGHHHH----HHHHHHHHHHHHHHHHHHHCCEESTTCGEEEE
T ss_pred CCCcHHHHHHHHHhhhc--cCCCCCeeeeCCCCC-ChhhhcHHH-H--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCcc
Confidence 99999999999877321 113358999999997 432223222 0 33444555677888899999999999998887
Q ss_pred E
Q psy15223 1261 L 1261 (2492)
Q Consensus 1261 i 1261 (2492)
|
T Consensus 153 i 153 (153)
T PF08264_consen 153 I 153 (153)
T ss_dssp E
T ss_pred C
Confidence 5
No 149
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.78 E-value=2.7e-18 Score=192.46 Aligned_cols=153 Identities=24% Similarity=0.452 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHh
Q psy15223 2251 DKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLIS 2330 (2492)
Q Consensus 2251 D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLa 2330 (2492)
|+|++++++++++.++++|++|+|++|++.+++|+++++||+|++.+|+++++...++. ++ ++.+++.+++.++++|+
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~-~~-~~~~l~~~l~~~~~ll~ 78 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDES-RE-AQYTLYEILKILLILLS 78 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHH-HH-HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhH-HH-HHHHHHHHHHHHhhccC
Confidence 89999999999999999999999999999999998899999999999999999866655 66 99999999999999999
Q ss_pred ccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEE
Q psy15223 2331 PILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEII 2410 (2492)
Q Consensus 2331 Pi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~ 2410 (2492)
|||||+|||+|++|... .....+||+.+.||. .....+... + +..+++...+++.++++|+..+++++.+.+|+
T Consensus 79 P~~P~~aEeiw~~l~~~--~~~~~~si~~~~~p~-~~~~~~~~~-~--~~~~~~~~~v~~~i~~~r~~~~i~~~~~~~v~ 152 (153)
T PF08264_consen 79 PFMPFIAEEIWQRLKSE--KLGEKSSIFLEKWPE-DPEFIDEEL-E--EEAFEILKEVVQVIRKIRKEKNIKPKEPLKVV 152 (153)
T ss_dssp TTSHHHHHHHHHHCTTH--HTTSSSSGGGS------GGGGHHHH----HHHHHHHHHHHHHHHHHHHCCEESTTCGEEEE
T ss_pred CCCcHHHHHHHHHhhhc--cCCCCCeeeeCCCCC-ChhhhcHHH-H--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCcc
Confidence 99999999999877321 113457999999997 433223222 0 33445556788999999999999999998887
Q ss_pred E
Q psy15223 2411 L 2411 (2492)
Q Consensus 2411 i 2411 (2492)
|
T Consensus 153 i 153 (153)
T PF08264_consen 153 I 153 (153)
T ss_dssp E
T ss_pred C
Confidence 5
No 150
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.78 E-value=3.2e-19 Score=181.33 Aligned_cols=92 Identities=28% Similarity=0.352 Sum_probs=83.7
Q ss_pred CCCcccccccc-cccCCcceeeeeeeC--CEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCCh
Q psy15223 50 LSPIPHRAKLA-LIAGEVPVGAVLVKN--NLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPC 126 (2492)
Q Consensus 50 M~~a~~~a~~~-~~~~~~pvGaviv~~--~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC 126 (2492)
|+.|+++|+++ ...++.|||||||++ |++++.|+|......+++.|||++||+++.+... + ++++||||+|||
T Consensus 1 m~~a~~~a~~a~~~~~~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~~---~-~~~tly~tlePC 76 (96)
T cd00786 1 MTEALKAADLGYAKESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSEGD---T-KGQMLYVALSPC 76 (96)
T ss_pred CHHHHHHHHhccCCCCCCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHHHcCC---C-CceEEEEECCCh
Confidence 66778888888 678999999999965 9999999999998899999999999999988653 3 489999999999
Q ss_pred HhHHHHHHHhCCceEEEec
Q psy15223 127 AMCAGAIIHVRLGEIIYGT 145 (2492)
Q Consensus 127 ~mC~~ai~~~gi~rvv~g~ 145 (2492)
+||+++|+|+||++|||+.
T Consensus 77 ~mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 77 GACAQLIIELGIKDVIVVL 95 (96)
T ss_pred HHHHHHHHHhCCCCEEEee
Confidence 9999999999999999985
No 151
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.77 E-value=1.2e-19 Score=188.22 Aligned_cols=100 Identities=40% Similarity=0.675 Sum_probs=88.9
Q ss_pred ccCCCCCCCcccccccccccCCcceeeeeee-CCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc
Q psy15223 44 ETDSPYLSPIPHRAKLALIAGEVPVGAVLVK-NNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT 122 (2492)
Q Consensus 44 etD~~~M~~a~~~a~~~~~~~~~pvGaviv~-~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t 122 (2492)
++|+.||..|+.+|+++...++.|||||||+ +|++|+.|+|....+.+++.|||++||.++.+. +...+ +|++||||
T Consensus 2 ~~~~~~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~-~~~~~-~~~~lyvt 79 (102)
T PF00383_consen 2 EWDEEFMRIAIELAKRSRPCGNFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARN-GGSSL-KGCTLYVT 79 (102)
T ss_dssp CHHHHHHHHHHHHHHTHBTTTSSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHT-TSSGE-TTEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhh-ccccc-cCcccccC
Confidence 4677899999999999998899999999998 899999999999988899999999999999998 44445 48999999
Q ss_pred CCChHhHHHHHHHhCCceEEEec
Q psy15223 123 LEPCAMCAGAIIHVRLGEIIYGT 145 (2492)
Q Consensus 123 ~EPC~mC~~ai~~~gi~rvv~g~ 145 (2492)
+|||+||+++|+++||+|||||.
T Consensus 80 ~ePC~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 80 LEPCGMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp E--BHHHHHHHHHHTSSEEEEEE
T ss_pred CCCHHHHHHHHHHHCcCeEEEeC
Confidence 99999999999999999999984
No 152
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.75 E-value=1.7e-18 Score=193.39 Aligned_cols=162 Identities=26% Similarity=0.337 Sum_probs=108.0
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
.|.-+.|.|++.+. +..|-|+||||+||+|.++||++|+++.+.--. -....+.++
T Consensus 6 kS~G~~i~F~i~~~---------------~~~i~vFTTrpdTifGvtfials~~H~lv~~l~---------~~~~~l~~f 61 (185)
T PF13603_consen 6 KSEGAEIDFKIKGS---------------NEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLA---------ENNPELQEF 61 (185)
T ss_dssp EEEEEEEEEEBTTS---------------SCEEEEEES-GGGGGG--EEEEETTSCHHHHCT---------TTHHHHHHH
T ss_pred CcccEEEEEEecCC---------------CCEEEEEECCcchhhCceEEEECCCCHHHHhhh---------hhhhhHHHH
Confidence 45567889988653 347999999999999999999999988332111 112233333
Q ss_pred HHHcCCcCc-E----EEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCC
Q psy15223 684 LKKFGFKGN-I----IGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNM 758 (2492)
Q Consensus 684 ~~~~~~~~~-~----~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l 758 (2492)
.++...... . ..+..|- +.|.++.||++ ++++||+.++||..+.|||+||.+|+|+..||++|++|||
T Consensus 62 i~~~~~~~~~~~~~~~~~k~Gv-~tg~~aihP~t------~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~l 134 (185)
T PF13603_consen 62 IEKCKKIKNSERNKDFKEKEGV-FTGLYAIHPLT------GKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNL 134 (185)
T ss_dssp HHHHHTS-HHHHHHCSSS--EE-EEEEEEE-TTT------S-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT-
T ss_pred HHHHhcCCHhHhhhhccccccC-cCCCEEECCCC------CCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCC
Confidence 333211100 0 0123454 67899999999 8999999999999999999999999999999999999999
Q ss_pred CCCCcccccCC-------------CCcccccCCCCCCcchhhchHHHHHHHH
Q psy15223 759 KDSDIINPVMD-------------DGNFISTLPLFGGMSIWKASKLICSYLK 797 (2492)
Q Consensus 759 ~~~~~~~~vd~-------------~G~~~~~~~~~~G~~v~~a~~~i~~~L~ 797 (2492)
|..+++.|.++ +|.+. +.++|.||+..+|+++|++.|+
T Consensus 135 pi~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS~~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 135 PIKQVIKPKDDNEEIDNKQEAYTGDGILI-NSGEFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp -----EEBSSSS---STTSS---S--EE--SSGGGTTSBHHHHHHHHHHHHH
T ss_pred CeeEEEcCCCCcccccccccCcCCCEEEE-eCCCCCCCCHHHHHHHHHHHhC
Confidence 87777777764 36666 4579999999999999999985
No 153
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.75 E-value=2.3e-16 Score=210.78 Aligned_cols=198 Identities=16% Similarity=0.098 Sum_probs=140.5
Q ss_pred eeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcc----------------------
Q psy15223 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQ---------------------- 1030 (2492)
Q Consensus 973 Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~---------------------- 1030 (2492)
-+|+.|.||+ +||..+.....++.- .+.+++..|||.+ ..|.|||||+||+|+|+
T Consensus 330 iI~V~g~~q~-~h~~~v~~~l~~lG~-~~~~~l~h~~~~~-V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~ 406 (566)
T TIGR00456 330 MIYVWGSDHH-LHIAQFFAILEKLGF-YKKKELIHLNFGM-VPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEE 406 (566)
T ss_pred EEEEecCcHH-HHHHHHHHHHHHcCC-CCCCceEEEEEEE-EECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccH
Confidence 3788899999 788888776666643 3446788888876 46789999999999998
Q ss_pred -hhhhhcChhhHHHHhhccCcccccccCHHHHHHH--------HHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHH
Q psy15223 1031 -KLCNLFGAEILRLWVASTDYSKDLSISNEILNRV--------VETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEID 1101 (2492)
Q Consensus 1031 -~ii~~yGaD~lRl~l~s~~~~~d~~fs~~~l~~~--------~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D 1101 (2492)
++++.+|+|++||++++....+|++|+++.+.+. ...+.|+.+.++.... ... +.. ..+.....+.+
T Consensus 407 ~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~--~~~-~~~-~~~~~~~~~~e 482 (566)
T TIGR00456 407 EDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADI--DGE-KLI-ADDFSLLEEKE 482 (566)
T ss_pred HHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhccc--ccc-ccc-ccccCCCCHHH
Confidence 7788899999999999988889999999875332 2356666666664311 111 000 00111235567
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccC--ChHHHHHHHHHHHHHHHHHHHHh
Q psy15223 1102 KYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK--NSHARRSAQTSIWHINQSLLRLI 1179 (2492)
Q Consensus 1102 ~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~--~~~~r~sa~~~L~~il~~l~~lL 1179 (2492)
+.++..+..+...+.+++++++++.+++.+++++ .. .|.|++.. +...... -...|.........+|...+.||
T Consensus 483 ~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La-~~-~N~yy~~~--~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~lL 558 (566)
T TIGR00456 483 KELLKLLLQFPDVLEEAAEELEPHVLTNYLYELA-SL-FSSFYKAC--PVLDAENENLAAARLALLKATRQTLKNGLQLL 558 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH-HH-HHHHHhcC--ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999 34 45565543 2222111 12456666666677777777777
Q ss_pred cc
Q psy15223 1180 SP 1181 (2492)
Q Consensus 1180 aP 1181 (2492)
.-
T Consensus 559 GI 560 (566)
T TIGR00456 559 GI 560 (566)
T ss_pred CC
Confidence 53
No 154
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.70 E-value=1.6e-15 Score=202.62 Aligned_cols=197 Identities=17% Similarity=0.125 Sum_probs=139.0
Q ss_pred eeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcc----------------------
Q psy15223 2123 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQ---------------------- 2180 (2492)
Q Consensus 2123 Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~---------------------- 2180 (2492)
-+|+.|.||+ +||..+.....++.- .+.+++..|||.+ .+|.|||||+||+|+|.
T Consensus 330 iI~V~g~~q~-~h~~~v~~~l~~lG~-~~~~~l~h~~~~~-V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~ 406 (566)
T TIGR00456 330 MIYVWGSDHH-LHIAQFFAILEKLGF-YKKKELIHLNFGM-VPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEE 406 (566)
T ss_pred EEEEecCcHH-HHHHHHHHHHHHcCC-CCCCceEEEEEEE-EECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccH
Confidence 3788899999 688887766666543 3446788888766 45789999999999998
Q ss_pred -hhhhccChhHHHHHHhccCCCCcccccHHHHHH--------HHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHH
Q psy15223 2181 -KLCNLFGAEILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEID 2251 (2492)
Q Consensus 2181 -~ii~~yGaD~lR~~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D 2251 (2492)
++++.+|+|++||++++....+|.+|+++.+.+ ..+.+.|+.+.++.... ...... . .......+.+
T Consensus 407 ~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~--~~~~~~-~-~~~~~~~~~e 482 (566)
T TIGR00456 407 EDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADI--DGEKLI-A-DDFSLLEEKE 482 (566)
T ss_pred HHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhccc--cccccc-c-cccCCCCHHH
Confidence 777889999999999998789999999987543 34556666666654311 111000 0 0111235668
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCC--hHHHHHHHHHHHHHHHHHHHHH
Q psy15223 2252 KYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKN--SHARRSAQTSIWHINQSLLRLI 2329 (2492)
Q Consensus 2252 ~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~--~~~r~~~~~~l~~il~~l~~lL 2329 (2492)
+.++..+..+.+.+..++++++++.++..+++++. ..|.|++.. +....... ...|.........+|+..+.+|
T Consensus 483 ~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~--~~N~yy~~~--~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~lL 558 (566)
T TIGR00456 483 KELLKLLLQFPDVLEEAAEELEPHVLTNYLYELAS--LFSSFYKAC--PVLDAENENLAAARLALLKATRQTLKNGLQLL 558 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH--HHHHHHhcC--ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999983 456666543 33222111 2345555556666777777776
Q ss_pred h
Q psy15223 2330 S 2330 (2492)
Q Consensus 2330 a 2330 (2492)
.
T Consensus 559 G 559 (566)
T TIGR00456 559 G 559 (566)
T ss_pred C
Confidence 4
No 155
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.69 E-value=6.2e-16 Score=199.77 Aligned_cols=102 Identities=22% Similarity=0.320 Sum_probs=79.2
Q ss_pred eeeeecccccch---hhHHHHHHHHHHhcCCCCc--eEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhh
Q psy15223 972 ADLYLEGSDQHR---GWFHSSLLTSIILNKSAPY--KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 1046 (2492)
Q Consensus 972 ~Dl~~~G~D~~r---gwf~s~l~~~~~~~~~~p~--k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~ 1046 (2492)
+|+=..|+||+- +|-.++-+...++.+..|. .--++| ++.+|+|||||+||+|+++|+++.+|+|++||+++
T Consensus 226 V~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~---L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l 302 (515)
T TIGR00467 226 VTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWIS---LKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFA 302 (515)
T ss_pred cccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEE---EcCCCccccCCCCCCccHHHHHHHcCHHHHHHHHh
Confidence 444455888873 2555544444466666663 444444 77899999999999999999999999999999999
Q ss_pred ccCcccccccCHHHHHHHHHHHHHHHHHHHH
Q psy15223 1047 STDYSKDLSISNEILNRVVETYRRIRNTLRF 1077 (2492)
Q Consensus 1047 s~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf 1077 (2492)
+.++.++++|+.+.+ ++.+.|.++.+.+..
T Consensus 303 ~~~~~~~ldFd~~~l-~~~dey~r~~~~~~~ 332 (515)
T TIGR00467 303 RTKPEFHISFDLDVI-KLYEDYDKFERFYYG 332 (515)
T ss_pred ccCCCCCCcCCHHHH-HHHHHHHHHHHHHHh
Confidence 999999999999998 888888888776644
No 156
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.67 E-value=5e-17 Score=173.23 Aligned_cols=121 Identities=27% Similarity=0.351 Sum_probs=101.3
Q ss_pred ccCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCC----------------------CCcHHHHHH
Q psy15223 44 ETDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDP----------------------TAHAEIIAL 101 (2492)
Q Consensus 44 etD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~----------------------~~HaE~~ai 101 (2492)
..|+.||..|...|.+| .+++..||||||+||+||++|||+.+++.+. +.|||+|||
T Consensus 7 ~wdeyfm~~A~l~a~Rs-tc~r~~VGAvIvkd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~NAi 85 (164)
T COG2131 7 MWDEYFMAIAELVALRS-TCPRRQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQNAI 85 (164)
T ss_pred HHHHHHHHHHHHHHHHc-cCcccceeEEEEeCCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHHHHH
Confidence 36888998888777776 7888999999999999999999998876532 579999999
Q ss_pred HHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCce
Q psy15223 102 RMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHH 168 (2492)
Q Consensus 102 ~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~ 168 (2492)
.+|++.+-.. .|+++|||+.||.+|+..|+++||++|||+...++....-....++.++|+...
T Consensus 86 l~aa~~g~~~---~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~~~~~~~~s~~l~~~agv~~~ 149 (164)
T COG2131 86 LQAARHGVGL---EGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTETVAPYSQELLEEAGVKVR 149 (164)
T ss_pred HHHHhcCCCC---CCcEEEEEecccHHHHHHHHHhCceEEEeecCCCcchhhHHHHHHHHhCCceEE
Confidence 9999976432 489999999999999999999999999999988776422335677888888643
No 157
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=6.6e-14 Score=182.67 Aligned_cols=200 Identities=21% Similarity=0.220 Sum_probs=143.3
Q ss_pred eeeecccccchhhHHHHHHHHHHhcCCCCceEEEEe---eEEEcCCCccccccCCCccCcchhhhhcC------------
Q psy15223 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH---GFVVDSKGKKMSKSKGNIIKPQKLCNLFG------------ 1037 (2492)
Q Consensus 973 Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~h---G~vld~~G~KMSKS~GN~i~p~~ii~~yG------------ 1037 (2492)
-+|+.|.||+ +||..+.....++.- .+-+.++.| |++.+++|.||||..||+|+.+|+++.-+
T Consensus 337 ~IyV~gadq~-~~~~ql~~~l~~~g~-~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~ 414 (577)
T COG0018 337 LIYVLGADQH-GHFKQLKAVLELLGY-GPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEE 414 (577)
T ss_pred EEEEeCCcch-hHHHHHHHHHHHhcC-CCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhHhhhhhh
Confidence 3788899999 677666554444433 333334444 56678899999999999999999999888
Q ss_pred ----------hhhHHHHhhccCcccccccCHHHHHHHH--------HHHHHHHHHHHHHhhcCCCCCCCcccccccccch
Q psy15223 1038 ----------AEILRLWVASTDYSKDLSISNEILNRVV--------ETYRRIRNTLRFLLANTSDFNPNINIIKISDMVE 1099 (2492)
Q Consensus 1038 ----------aD~lRl~l~s~~~~~d~~fs~~~l~~~~--------~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~ 1099 (2492)
.|++||++++.+..+++.|+++.+.... -++.|+.+++|-.-..-.++..... .....+
T Consensus 415 ~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~~~~~~~~~~---~~l~~~ 491 (577)
T COG0018 415 KNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGEDELDLSTEAD---ALLTEL 491 (577)
T ss_pred hhHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhccccccccccccc---hhccCh
Confidence 9999999999999999999999875432 2677899988876443111111000 011122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCC--hHHHHHHHHHHHHHHHHHHH
Q psy15223 1100 IDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKN--SHARRSAQTSIWHINQSLLR 1177 (2492)
Q Consensus 1100 ~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~--~~~r~sa~~~L~~il~~l~~ 1177 (2492)
.++.++.+|.++..-+.++.+++++|..+..++++. ..|++||=. -+....+.. ...|.........+|+..+.
T Consensus 492 ~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA-~~Fn~fY~~---~~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~ 567 (577)
T COG0018 492 EERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLA-GSFNSFYNA---CPVLGAENEELRAARLALVKATRQVLKNGLD 567 (577)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhh---CCcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999999999999999999999 689999943 233332221 33555666666677777777
Q ss_pred Hhcc
Q psy15223 1178 LISP 1181 (2492)
Q Consensus 1178 lLaP 1181 (2492)
||.-
T Consensus 568 LLGI 571 (577)
T COG0018 568 LLGI 571 (577)
T ss_pred hcCC
Confidence 7754
No 158
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.66 E-value=2.1e-15 Score=194.93 Aligned_cols=104 Identities=21% Similarity=0.346 Sum_probs=80.4
Q ss_pred Cceeeecccchhh---hhHHHHHHHHHHhcCCccccEEEEeeeE-EcCCCceeeeccCCccCcchhhhccChhHHHHHHh
Q psy15223 2121 PADLYLEGSDQHR---GWFHSSLLTSIILNKSAPYKALLTHGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r---~wf~~~l~~~~~l~~~~pfk~v~~hG~v-ld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
.+|+=..|+||+- +|..++-+...++.+..|.. +..+|+ ++.+|+|||||+||+|++.|+++.+|+|++||+++
T Consensus 225 gV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~--~~ye~v~L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l 302 (515)
T TIGR00467 225 KVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVT--VQYEWISLKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFA 302 (515)
T ss_pred CcccccCCCCccCccCCchhHHHHHHHHhCCCCCcC--cEEEEEEEcCCCccccCCCCCCccHHHHHHHcCHHHHHHHHh
Confidence 4566666888873 25555444434565665532 334444 77889999999999999999999999999999999
Q ss_pred ccCCCCcccccHHHHHHHHHHHHHHHHHHHH
Q psy15223 2197 STDYSKDLSISNEILNRVVETYRRIRNTLRF 2227 (2492)
Q Consensus 2197 s~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~ 2227 (2492)
+.++.++++|+.+.+ ++.+.+.++.+.+..
T Consensus 303 ~~~~~~~ldFd~~~l-~~~dey~r~~~~~~~ 332 (515)
T TIGR00467 303 RTKPEFHISFDLDVI-KLYEDYDKFERFYYG 332 (515)
T ss_pred ccCCCCCCcCCHHHH-HHHHHHHHHHHHHHh
Confidence 999999999999998 888888888776643
No 159
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.62 E-value=1.9e-13 Score=181.94 Aligned_cols=195 Identities=16% Similarity=0.180 Sum_probs=141.5
Q ss_pred eeeecccccchhhHHHHHHHHHHhcCCCC-ceEEEEeeEEEcCCCccccccCCCccCcchhhhh----------------
Q psy15223 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAP-YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL---------------- 1035 (2492)
Q Consensus 973 Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p-~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~---------------- 1035 (2492)
-+|+.|.||+ +||..+.....++.-..+ --.++..|+|. .+|+||||.+||+|+.+|++++
T Consensus 327 ~IyV~g~dq~-~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l 404 (562)
T PRK12451 327 ALYVVGPEQS-LHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNL 404 (562)
T ss_pred EEEEeCCcHH-HHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhcccc
Confidence 3788899999 788888877776653311 24567888887 6888999999999999999996
Q ss_pred ---------cChhhHHHHhhccCcccccccCHHHHHHH--------HHHHHHHHHHHHHHhhcCCCCCCCcccccccccc
Q psy15223 1036 ---------FGAEILRLWVASTDYSKDLSISNEILNRV--------VETYRRIRNTLRFLLANTSDFNPNINIIKISDMV 1098 (2492)
Q Consensus 1036 ---------yGaD~lRl~l~s~~~~~d~~fs~~~l~~~--------~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~ 1098 (2492)
.|.|++||++++.+..+++.|+++.+-.. .-++.|+.+++|-.-. ++. . ....-..
T Consensus 405 ~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~~---~~~--~--~~~~l~~ 477 (562)
T PRK12451 405 KQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESV---EFE--T--CTFALKD 477 (562)
T ss_pred ccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcCC---Ccc--c--cccCCCC
Confidence 77999999999999999999999985221 2367788888887521 111 0 1111124
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHH
Q psy15223 1099 EIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRL 1178 (2492)
Q Consensus 1099 ~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~l 1178 (2492)
+.++-++..+..+...+.+++++++++.+++.+++++ ..++.+| +.. ..+ .++.....|.....+...+|...+.|
T Consensus 478 ~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA-~~fN~fy-~~~-~Vl-~~~~~~~~RL~L~~a~~~vL~~gL~L 553 (562)
T PRK12451 478 DYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVA-QSFNKYY-GNV-RIL-EESAEKDSRLALVYAVTVVLKEGLRL 553 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHH-HhC-CCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567788999999999999999999999999999999 4555555 532 222 22112345555566666777777777
Q ss_pred hc
Q psy15223 1179 IS 1180 (2492)
Q Consensus 1179 La 1180 (2492)
|.
T Consensus 554 LG 555 (562)
T PRK12451 554 LG 555 (562)
T ss_pred cC
Confidence 64
No 160
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5.4e-13 Score=174.28 Aligned_cols=200 Identities=21% Similarity=0.213 Sum_probs=143.4
Q ss_pred eeeecccchhhhhHHHHHHHHHHhcCCccccEEEE---eeeEEcCCCceeeeccCCccCcchhhhccC------------
Q psy15223 2123 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLT---HGFVVDSKGKKMSKSKGNIIKPQKLCNLFG------------ 2187 (2492)
Q Consensus 2123 Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~---hG~vld~~G~KMSKS~GNvi~p~~ii~~yG------------ 2187 (2492)
-+|+.|.||+ +||..+.....++.-. +-+.++. .|++.+.+|.||||..||+|+.+|+++.-+
T Consensus 337 ~IyV~gadq~-~~~~ql~~~l~~~g~~-~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~ 414 (577)
T COG0018 337 LIYVLGADQH-GHFKQLKAVLELLGYG-PDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEE 414 (577)
T ss_pred EEEEeCCcch-hHHHHHHHHHHHhcCC-CccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhHhhhhhh
Confidence 3788899999 5666655443443332 3333433 456778899999999999999999999888
Q ss_pred ----------hhHHHHHHhccCCCCcccccHHHHHH--------HHHHHHHHHHHHHHHHhcCCCCCCCcccccccccch
Q psy15223 2188 ----------AEILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVE 2249 (2492)
Q Consensus 2188 ----------aD~lR~~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~ 2249 (2492)
.|++||++++.+..+++.|+++.+.. ++.++.|+.+++|.....-.++....+ .....+
T Consensus 415 ~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~~~~~~~~~~---~~l~~~ 491 (577)
T COG0018 415 KNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGEDELDLSTEAD---ALLTEL 491 (577)
T ss_pred hhHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhccccccccccccc---hhccCh
Confidence 99999999999999999999998754 566788999998876433111111000 011223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCC--hHHHHHHHHHHHHHHHHHHH
Q psy15223 2250 IDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKN--SHARRSAQTSIWHINQSLLR 2327 (2492)
Q Consensus 2250 ~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~--~~~r~~~~~~l~~il~~l~~ 2327 (2492)
.++.++.+|.++..-+..+.+++++|..+..++++. ..|++||=. -+....... ...|.........+|+..+.
T Consensus 492 ~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA-~~Fn~fY~~---~~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~ 567 (577)
T COG0018 492 EERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLA-GSFNSFYNA---CPVLGAENEELRAARLALVKATRQVLKNGLD 567 (577)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhh---CCcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999 689999943 233332221 23455555556667777777
Q ss_pred HHhc
Q psy15223 2328 LISP 2331 (2492)
Q Consensus 2328 lLaP 2331 (2492)
||.-
T Consensus 568 LLGI 571 (577)
T COG0018 568 LLGI 571 (577)
T ss_pred hcCC
Confidence 7643
No 161
>PLN02286 arginine-tRNA ligase
Probab=99.59 E-value=8e-13 Score=175.97 Aligned_cols=200 Identities=11% Similarity=0.109 Sum_probs=148.3
Q ss_pred eeeecccccchhhHHHHHHHHHHhcCCCC----ceEEEEeeEEEcCCCccccccCCCccCcchhhh--------------
Q psy15223 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAP----YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN-------------- 1034 (2492)
Q Consensus 973 Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p----~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~-------------- 1034 (2492)
-+|+.|.||+ +||..+.....++.-..+ --.++..|||+..+|+||||..||+|+.+|+++
T Consensus 330 ~IyVvg~~q~-~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~ 408 (576)
T PLN02286 330 IIYVTDVGQQ-QHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERG 408 (576)
T ss_pred EEEEEeCcHH-HHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhcc
Confidence 4788899999 788888777766653212 245788999977889999999999999999998
Q ss_pred ---------------hcChhhHHHHhhccCcccccccCHHHHHHH--------HHHHHHHHHHHHHHhhcCCCCCCCccc
Q psy15223 1035 ---------------LFGAEILRLWVASTDYSKDLSISNEILNRV--------VETYRRIRNTLRFLLANTSDFNPNINI 1091 (2492)
Q Consensus 1035 ---------------~yGaD~lRl~l~s~~~~~d~~fs~~~l~~~--------~~~~~kl~n~~rf~l~~l~~~~~~~~~ 1091 (2492)
..|.|++||++++.+..++++|+++.+-.. .-++.|+.+++|..-....++...
T Consensus 409 ~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~--- 485 (576)
T PLN02286 409 KDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKT--- 485 (576)
T ss_pred CccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCcccccccc---
Confidence 357899999999999999999999985322 236778888888753211111100
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHH
Q psy15223 1092 IKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHI 1171 (2492)
Q Consensus 1092 ~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~i 1171 (2492)
.+..-..+.++-++..|..+...+.++.+++++|..+..+++++ ..|+.||=+ .+.... ++...|.........+
T Consensus 486 ~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA-~~F~~fY~~---~~Vl~~-~~~~aRL~L~~a~~~v 560 (576)
T PLN02286 486 GKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLS-EKFTKFYSN---CKVNGS-EEETSRLLLCEATAIV 560 (576)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhc---CccCCC-CchhHHHHHHHHHHHH
Confidence 01111256677889999999999999999999999999999999 689999943 122221 1225677777777788
Q ss_pred HHHHHHHhcc
Q psy15223 1172 NQSLLRLISP 1181 (2492)
Q Consensus 1172 l~~l~~lLaP 1181 (2492)
|...+.||.-
T Consensus 561 L~~gL~LLGI 570 (576)
T PLN02286 561 MRKCFHLLGI 570 (576)
T ss_pred HHHHHHhcCC
Confidence 8888888753
No 162
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.53 E-value=4e-12 Score=169.43 Aligned_cols=195 Identities=16% Similarity=0.171 Sum_probs=140.3
Q ss_pred eeeecccchhhhhHHHHHHHHHHhcCCcc-ccEEEEeeeEEcCCCceeeeccCCccCcchhhhc----------------
Q psy15223 2123 DLYLEGSDQHRGWFHSSLLTSIILNKSAP-YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL---------------- 2185 (2492)
Q Consensus 2123 Dl~~~G~D~~r~wf~~~l~~~~~l~~~~p-fk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~---------------- 2185 (2492)
-+|+.|.||+ +||..+.....++.-..+ --.++..|+|. .+|+||||.+||+|+.+|++++
T Consensus 327 ~IyV~g~dq~-~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l 404 (562)
T PRK12451 327 ALYVVGPEQS-LHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNL 404 (562)
T ss_pred EEEEeCCcHH-HHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhcccc
Confidence 3788899999 788887776666642211 23468888887 6888999999999999999996
Q ss_pred ---------cChhHHHHHHhccCCCCcccccHHHHHH--------HHHHHHHHHHHHHHHHhcCCCCCCCcccccccccc
Q psy15223 2186 ---------FGAEILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNINIIKISDMV 2248 (2492)
Q Consensus 2186 ---------yGaD~lR~~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~ 2248 (2492)
.|.|++||++++.+..++++|+++.+-. ++..+.|+.+++|.... ++. . ....-..
T Consensus 405 ~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~~---~~~--~--~~~~l~~ 477 (562)
T PRK12451 405 KQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESV---EFE--T--CTFALKD 477 (562)
T ss_pred ccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcCC---Ccc--c--cccCCCC
Confidence 7799999999999999999999998522 45677788888887521 111 0 1111125
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHH
Q psy15223 2249 EIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRL 2328 (2492)
Q Consensus 2249 ~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~l 2328 (2492)
+.++.++..+..+.+.+.+++++++++.++..+++++ ..++ .|++.. ..+ .+......|.........+|...+.|
T Consensus 478 ~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA-~~fN-~fy~~~-~Vl-~~~~~~~~RL~L~~a~~~vL~~gL~L 553 (562)
T PRK12451 478 DYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVA-QSFN-KYYGNV-RIL-EESAEKDSRLALVYAVTVVLKEGLRL 553 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHH-HHHHhC-CCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6678889999999999999999999999999999999 3454 455532 222 21111234444555556677777776
Q ss_pred Hh
Q psy15223 2329 IS 2330 (2492)
Q Consensus 2329 La 2330 (2492)
|.
T Consensus 554 LG 555 (562)
T PRK12451 554 LG 555 (562)
T ss_pred cC
Confidence 63
No 163
>PLN02286 arginine-tRNA ligase
Probab=99.49 E-value=1.9e-11 Score=162.96 Aligned_cols=199 Identities=11% Similarity=0.112 Sum_probs=147.2
Q ss_pred eeeecccchhhhhHHHHHHHHHHhcCCcc----ccEEEEeeeEEcCCCceeeeccCCccCcchhhh--------------
Q psy15223 2123 DLYLEGSDQHRGWFHSSLLTSIILNKSAP----YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN-------------- 2184 (2492)
Q Consensus 2123 Dl~~~G~D~~r~wf~~~l~~~~~l~~~~p----fk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~-------------- 2184 (2492)
-+|+.|.||. +||..+.....++.-..+ --.++..|||+..+|+||||.+||+|+.+|+++
T Consensus 330 ~IyVvg~~q~-~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~ 408 (576)
T PLN02286 330 IIYVTDVGQQ-QHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERG 408 (576)
T ss_pred EEEEEeCcHH-HHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhcc
Confidence 4788999999 688887766666642212 235688999977889999999999999999998
Q ss_pred ---------------ccChhHHHHHHhccCCCCcccccHHHHHH--------HHHHHHHHHHHHHHHHhcCCCCCCCccc
Q psy15223 2185 ---------------LFGAEILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNINI 2241 (2492)
Q Consensus 2185 ---------------~yGaD~lR~~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~r~~~~~~~~~~~~~~~ 2241 (2492)
..|.|++||++++.+..++++|+++.+-. ++..+.|+.+++|.......++.. .
T Consensus 409 ~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~---~ 485 (576)
T PLN02286 409 KDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKK---T 485 (576)
T ss_pred CccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccc---c
Confidence 35789999999999999999999998533 456777888888764221111100 0
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHH
Q psy15223 2242 IKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHI 2321 (2492)
Q Consensus 2242 ~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~i 2321 (2492)
.+.....+.++.++..+..+...+..+.++++.+..+..+++++ ..|+.||=+ .+.... ++...|.........+
T Consensus 486 ~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA-~~F~~fY~~---~~Vl~~-~~~~aRL~L~~a~~~v 560 (576)
T PLN02286 486 GKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLS-EKFTKFYSN---CKVNGS-EEETSRLLLCEATAIV 560 (576)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhc---CccCCC-CchhHHHHHHHHHHHH
Confidence 01112256778899999999999999999999999999999999 689999942 122221 1224566666667778
Q ss_pred HHHHHHHHh
Q psy15223 2322 NQSLLRLIS 2330 (2492)
Q Consensus 2322 l~~l~~lLa 2330 (2492)
|+..+.||.
T Consensus 561 L~~gL~LLG 569 (576)
T PLN02286 561 MRKCFHLLG 569 (576)
T ss_pred HHHHHHhcC
Confidence 888887774
No 164
>KOG2771|consensus
Probab=99.49 E-value=9.3e-15 Score=170.44 Aligned_cols=130 Identities=25% Similarity=0.424 Sum_probs=109.7
Q ss_pred CCCCcccccccccccCCcceeeeeee--CCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCc---------------
Q psy15223 49 YLSPIPHRAKLALIAGEVPVGAVLVK--NNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNY--------------- 111 (2492)
Q Consensus 49 ~M~~a~~~a~~~~~~~~~pvGaviv~--~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~--------------- 111 (2492)
.|..++..|..+.. ..|+|++|++ ...|++.|...+.. .+|..|+-|++++..++.....
T Consensus 170 i~e~~I~~a~~~~~--~~~~~a~I~~p~~~~Via~~~~~~~~-~~P~eh~~mv~v~~v~rrq~~~~~~~~~~~~~~f~~~ 246 (344)
T KOG2771|consen 170 IGELLIAMATDGHA--SRPVSAAIVDPVMDRVIAAGTGEVCA-YNPIEHCVMVLVHFVARRQEEGTWDLHPIPLLIFNAV 246 (344)
T ss_pred HHHHHHHHHhhhcc--ccCccceecCCccceEEecCCCcccc-cCcHHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 45555555554433 3899999995 46777777766544 4899999999999887754433
Q ss_pred ----------------------ccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCcee
Q psy15223 112 ----------------------RFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHT 169 (2492)
Q Consensus 112 ----------------------~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~ 169 (2492)
+||+|+++|+|+|||.||+||++|+||+||+|+..++..|+.|+.+.++..+.+||+|
T Consensus 247 ~~~~~~~~~~v~~~D~~~d~~pYLCtgydv~ll~EPC~MCsMALvHsRikRvfy~~~~s~~G~L~s~~~i~~~k~LNhry 326 (344)
T KOG2771|consen 247 SSPFYKQTVAVQLLDVSADSFPYLCTGYDVYLLHEPCAMCSMALVHSRIKRVFYCKPMSTAGGLGSLYRIHQRKSLNHRY 326 (344)
T ss_pred cchhhhhhchhccccccccccceeeecceEEEecChHHHHHHHHHHHhhhheeeccCCCCCCCccceeEeeeccccCcce
Confidence 8899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHH
Q psy15223 170 ILTGGVMQKQCE 181 (2492)
Q Consensus 170 ~v~~gv~~~e~~ 181 (2492)
+|+.|.+++++.
T Consensus 327 ~vfr~~~e~d~~ 338 (344)
T KOG2771|consen 327 EVFRGYLEEDPI 338 (344)
T ss_pred EEEEeecccccc
Confidence 999999988775
No 165
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.46 E-value=8.4e-13 Score=144.40 Aligned_cols=135 Identities=20% Similarity=0.443 Sum_probs=112.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy15223 1056 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 1135 (2492)
Q Consensus 1056 fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~ 1135 (2492)
||++.+..+.+.+.|+||+.+|+..+...+++..+ +.......|+++++.++++++++.++|++|+|++|++.+++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~ 78 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEE--DPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFF 78 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCcccc--ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 67888999999999999999998764343322111 1233467899999999999999999999999999999999999
Q ss_pred hhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHc
Q psy15223 1136 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 1194 (2492)
Q Consensus 1136 ~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l 1194 (2492)
..+++|+|++..++|... .+..+..+...++.++++.++++|+||+||+||++|+.|
T Consensus 79 ~~~~~N~Yi~~~~pW~~~--~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 79 WNDFCDWYLELVKPRLYG--EDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHhHHHHHHhhHHHcC--CChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 766999999999998664 233456678889999999999999999999999999864
No 166
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.45 E-value=1.3e-12 Score=142.97 Aligned_cols=135 Identities=20% Similarity=0.443 Sum_probs=111.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy15223 2206 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 2285 (2492)
Q Consensus 2206 fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~ 2285 (2492)
||++.+..+.+.++|+||+.+|+......+++... +.......|+++++.++++++.+..+|++|+|++|++.+++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~ 78 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEE--DPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFF 78 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCcccc--ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 67888999999999999999998654333222110 1123456799999999999999999999999999999999999
Q ss_pred HhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHc
Q psy15223 2286 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 2344 (2492)
Q Consensus 2286 ~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L 2344 (2492)
.++++|+|++..++|... .+..+..+...++.++++.++++|+|||||+||++|+.|
T Consensus 79 ~~~~~N~Yi~~~~pW~~~--~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 79 WNDFCDWYLELVKPRLYG--EDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHhHHHHHHhhHHHcC--CChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 766999999999998653 233345668889999999999999999999999999865
No 167
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.45 E-value=3.1e-13 Score=158.99 Aligned_cols=123 Identities=19% Similarity=0.221 Sum_probs=108.4
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHH
Q psy15223 452 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 531 (2492)
Q Consensus 452 f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~ 531 (2492)
.++--.+|+|||.+||||++|.++.|+++|+.++.|++|.+..|+|.||.+|+..+++. ..+++++..+
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~-----------~~~~~~~~~~ 70 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL-----------EKWRKLVEES 70 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999754 1277899999
Q ss_pred HHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCC
Q psy15223 532 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 589 (2492)
Q Consensus 532 i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~ 589 (2492)
++.+++.+++|||.+ +..+.|.+. ...+..++.+|.++|++|+..--+++|+.+
T Consensus 71 ~~~~~~~~~~L~i~~--d~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 71 IKADLETYGRLDVRF--DVWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HHHHHHHHHHhCCcC--ceecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 999999999999986 445566664 888999999999999999988777777543
No 168
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=8.6e-14 Score=152.57 Aligned_cols=78 Identities=38% Similarity=0.842 Sum_probs=72.0
Q ss_pred Ccchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhc
Q psy15223 1328 DLCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK 1405 (2492)
Q Consensus 1328 ~LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~ 1405 (2492)
..|..|..++ .|||+||+|||+||||+|||||+++++.|++|+.++++.....||++++.+|++++||.+++++||++
T Consensus 74 ~~l~~~tlyvT~EPC~MCagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~~~~~~~~~v~~g~~~~e~~~~l~~f~~~ 152 (152)
T COG0590 74 YRLKDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPRLNHRVEVYGGILEEECSALLSEFFRR 152 (152)
T ss_pred CCcCCcEEEEecCCHHHHHHHHHHhCCCeEEEecCCCCcCccCcccccccCCCCCcCeEEecchhhHHHHHHHHHHHhC
Confidence 4567775555 69999999999999999999999999999999999999998999999999999999999999999864
No 169
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.42 E-value=6.2e-13 Score=156.42 Aligned_cols=123 Identities=18% Similarity=0.215 Sum_probs=107.6
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q psy15223 1602 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 1681 (2492)
Q Consensus 1602 f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~ 1681 (2492)
.+|--.+|||||.|||||+++.++.|+++||.++.||+|.+..|+|.+|.+|+..|++. ..+++++..+
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~-----------~~~~~~~~~~ 70 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL-----------EKWRKLVEES 70 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999998654 1267789999
Q ss_pred HHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCC
Q psy15223 1682 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 1739 (2492)
Q Consensus 1682 i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~ 1739 (2492)
++.+++.+++||+++| ..+.|++. ...+..++.+|.++|++|...--+++|+.+
T Consensus 71 ~~~~~~~~~~L~i~~d--~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 71 IKADLETYGRLDVRFD--VWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HHHHHHHHHHhCCcCc--eecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 9999999999999864 45566654 888999999999999999998777777644
No 170
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.38 E-value=4.6e-12 Score=135.18 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=95.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH-HHH
Q psy15223 2206 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKL-QIY 2284 (2492)
Q Consensus 2206 fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l-~~f 2284 (2492)
|+.+.++.+.+.++|+++......+. ..+. ..+...|+|+++++++++++++++|++|+|++|++.+ +.|
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~---~~~~------~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~ 71 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIET---EGEL------EELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYEL 71 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhc---cCCc------cccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 67788888889999998887653221 1111 2346789999999999999999999999999999997 777
Q ss_pred HHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHc
Q psy15223 2285 CSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 2344 (2492)
Q Consensus 2285 ~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L 2344 (2492)
. +.+++|++..|++ .++.++.++++.++++|+||+||+|||+|+.|
T Consensus 72 ~--~~~~~Y~~~~~~~------------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 72 Q--NDLDWYRERGGAG------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred H--HHHHHHHHHhCcc------------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 6 4688999987764 24568999999999999999999999999865
No 171
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=99.36 E-value=2.8e-13 Score=151.10 Aligned_cols=79 Identities=38% Similarity=0.785 Sum_probs=71.3
Q ss_pred hhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhccccc
Q psy15223 1331 NRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRNF 1409 (2492)
Q Consensus 1331 ~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr~~ 1409 (2492)
.+|..++ .|||+||++||+|+||+|||||++++..|+.|+.++++....++|++++++|++++||.+||+.||+++|..
T Consensus 81 ~g~tlY~TlEPC~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~~l~~~~~~~~i~v~~gv~~~e~~~ll~~ff~~~~~~ 160 (172)
T PRK10860 81 LDATLYVTLEPCVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGVLADECAALLSDFFRMRRQE 160 (172)
T ss_pred CCcEEEeeCCCcHHHHHHHHHhCCCEEEEeecCCCCCCCCcHHHHhhcccCCCCCEEEeCccHHHHHHHHHHHHHHHhhc
Confidence 4564444 699999999999999999999999999999999988888888899999999999999999999999987754
No 172
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.35 E-value=8.7e-12 Score=133.07 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=94.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH-HHH
Q psy15223 1056 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKL-QIY 1134 (2492)
Q Consensus 1056 fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l-~~f 1134 (2492)
|+.+.++.+.+.++|+++......+. ..+. ..+...|+|++++++++++++.++|++|+|++|++.+ +.|
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~---~~~~------~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~ 71 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIET---EGEL------EELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYEL 71 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhc---cCCc------cccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 56778888888888888877653221 1111 2356789999999999999999999999999999997 777
Q ss_pred HhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHc
Q psy15223 1135 CSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 1194 (2492)
Q Consensus 1135 ~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l 1194 (2492)
. +.+++|++..|++ .+++++.++++.++++|+||+||+|||+|+.|
T Consensus 72 ~--~~~~~Y~~~~~~~------------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 72 Q--NDLDWYRERGGAG------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred H--HHHHHHHHHhCcc------------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 6 3688999988775 24578999999999999999999999999864
No 173
>KOG3127|consensus
Probab=99.28 E-value=2.3e-12 Score=141.27 Aligned_cols=121 Identities=23% Similarity=0.295 Sum_probs=94.1
Q ss_pred cccccCCCCCCCcccccccccccCCcceeeeee-eCCEEEEEEEcCCccCCC--------------------CCCcHHHH
Q psy15223 41 MLIETDSPYLSPIPHRAKLALIAGEVPVGAVLV-KNNLVISYGYNQQITRND--------------------PTAHAEII 99 (2492)
Q Consensus 41 ~~~etD~~~M~~a~~~a~~~~~~~~~pvGaviv-~~~~ii~~g~n~~~~~~~--------------------~~~HaE~~ 99 (2492)
.-.+.|..||..|...|.++ +.++..|||+|| .++.||++|||..+.+-+ -+.|||+|
T Consensus 62 ~~lswd~yFM~iA~LsA~RS-kDpntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~HAE~N 140 (230)
T KOG3127|consen 62 GYLSWDDYFMAIAFLSAKRS-KDPNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVHAEEN 140 (230)
T ss_pred cCccHHHHHHHHHHHHHHhc-cCcccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcceEEEeehHHH
Confidence 34578889999988888877 667889997777 789999999998776431 16799999
Q ss_pred HHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCC-CCccchhhhHHhhcCCCc
Q psy15223 100 ALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFK-TGACGSIINLFQEKKLNH 167 (2492)
Q Consensus 100 ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~-~~~~g~~~~~~~~~~~~~ 167 (2492)
||.++.+.. +. +|++|+|+-||.-|+..|+++||++|+|+....- -...-....++...|++.
T Consensus 141 Ai~~~~~~~----~~-~~~lYvtl~PC~~Ca~liiq~GIkeV~~~~~~~~~k~~~~~s~~~l~~agv~~ 204 (230)
T KOG3127|consen 141 AILNKGRER----VG-GCSLYVTLCPCNECAKLIIQAGIKEVYYSSSYYVDKYADRASKRMLDLAGVTL 204 (230)
T ss_pred HHHHhCccc----cC-CceEEEeecchHHHHHHHHHhhhhheeeccccccchHHHHHHHHHHHhcCcce
Confidence 999887653 33 7999999999999999999999999999987631 122233455666666664
No 174
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=99.25 E-value=9.4e-12 Score=131.04 Aligned_cols=91 Identities=21% Similarity=0.160 Sum_probs=77.0
Q ss_pred cccccc-cccCCcceeeeeee-CCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc-----CCChH
Q psy15223 55 HRAKLA-LIAGEVPVGAVLVK-NNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT-----LEPCA 127 (2492)
Q Consensus 55 ~~a~~~-~~~~~~pvGaviv~-~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t-----~EPC~ 127 (2492)
+.+..+ ...++.||||+|+. +|+|+ .|+|......+++.|||++||.++..... .. ..+++|+| +|||.
T Consensus 6 ~~~~~a~~~~~~~~vga~i~~~~g~i~-~G~n~e~~~~~~~~hAE~~ai~~~~~~~~--~~-~~~~i~vs~~~~~~sPC~ 81 (112)
T cd01283 6 AAAEFAYAPYSNFTVGAALLTKDGRIF-TGVNVENASYGLTLCAERTAIGKAVSEGL--RR-YLVTWAVSDEGGVWSPCG 81 (112)
T ss_pred HHHHhCcCCCCCCeEEEEEEECCCCEE-EeEEeecCCCCCCcCHHHHHHHHHHHcCC--Cc-eEEEEEEECCCCccCCCH
Confidence 334444 34578999999994 69988 89999988889999999999999988654 22 26899999 99999
Q ss_pred hHHHHHHHhCCceEEEecCCCC
Q psy15223 128 MCAGAIIHVRLGEIIYGTPSFK 149 (2492)
Q Consensus 128 mC~~ai~~~gi~rvv~g~~~~~ 149 (2492)
||+.+|.+.++++|+|...+++
T Consensus 82 ~C~~~l~~~~~~~v~~~~~~~~ 103 (112)
T cd01283 82 ACRQVLAEFLPSRLYIIIDNPK 103 (112)
T ss_pred HHHHHHHHhCCCCeEEEEEcCC
Confidence 9999999999999999987755
No 175
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.24 E-value=6.6e-11 Score=128.64 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=83.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHH
Q psy15223 2247 MVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLL 2326 (2492)
Q Consensus 2247 ~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~ 2326 (2492)
+...|+|+++++++++++++++|++|+|++|++.+++|+ +++|+|++..|++.+....+....+.+..++.++++.++
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~ 111 (129)
T cd07957 34 LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILA 111 (129)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999998 589999999998766532133445667788889999999
Q ss_pred HHHhccchHHHHHHHHHc
Q psy15223 2327 RLISPILSFTSEEAWSIF 2344 (2492)
Q Consensus 2327 ~lLaPi~P~~aEelw~~L 2344 (2492)
.+|+|||||+|||+|+.|
T Consensus 112 ~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 112 ILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHhcCCCChHHHHHHHhC
Confidence 999999999999999865
No 176
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.23 E-value=8.3e-11 Score=127.85 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=84.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHH
Q psy15223 1097 MVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLL 1176 (2492)
Q Consensus 1097 ~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~ 1176 (2492)
+...|+|++++++++++++.++|++|+|++|++.+++|+ +++++|++..|++.+....+..+++.+..++.++++.++
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~ 111 (129)
T cd07957 34 LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILA 111 (129)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999998 589999999999876642233455667788889999999
Q ss_pred HHhcccchhHHHHHHHHc
Q psy15223 1177 RLISPILSFTSEEAWSIF 1194 (2492)
Q Consensus 1177 ~lLaPilP~~aEeiw~~l 1194 (2492)
.+|+|||||+|||+|+.|
T Consensus 112 ~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 112 ILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHhcCCCChHHHHHHHhC
Confidence 999999999999999865
No 177
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.16 E-value=2.1e-10 Score=122.35 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=93.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy15223 2206 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 2285 (2492)
Q Consensus 2206 fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~ 2285 (2492)
|+++.+.++.+.++|++|.++...+.. .+.. +.......|+|++++++++++++.++|++|+|++|++.+++|+
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~---~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~ 74 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEAL---AAPA---AAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV 74 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhc---cccc---cccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 577888899999999999987643321 1110 0123456899999999999999999999999999999999999
Q ss_pred HhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHc
Q psy15223 2286 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 2344 (2492)
Q Consensus 2286 ~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L 2344 (2492)
+ ..|.|++...+ .+.++.++++.++++|+|||||+|||+|+.|
T Consensus 75 ~--~~n~~~~~~~p--------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 75 N--ALYKYKKKDAQ--------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred H--HHHHhhccccc--------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 4 35677542111 5678999999999999999999999999865
No 178
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.15 E-value=2.6e-10 Score=121.70 Aligned_cols=117 Identities=14% Similarity=0.150 Sum_probs=92.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy15223 1056 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 1135 (2492)
Q Consensus 1056 fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~ 1135 (2492)
|+++.+.++.+.++|++|.+++..+.. .|.. +.+.....|+|++++++++++++.++|++|+|++|++.+++|+
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~---~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~ 74 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEAL---AAPA---AAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV 74 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhc---cccc---cccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 567788889999999999987643321 1110 0123456899999999999999999999999999999999999
Q ss_pred hhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHc
Q psy15223 1136 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 1194 (2492)
Q Consensus 1136 ~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l 1194 (2492)
+ . .+.|++..++ .+.++.++++.++++|+|||||+|||+|+.|
T Consensus 75 ~-~-~n~~~~~~~p--------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 75 N-A-LYKYKKKDAQ--------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred H-H-HHHhhccccc--------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 4 3 5666542211 5688999999999999999999999999865
No 179
>KOG2771|consensus
Probab=99.04 E-value=6.6e-11 Score=138.73 Aligned_cols=71 Identities=34% Similarity=0.627 Sum_probs=66.7
Q ss_pred CCCcchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHH
Q psy15223 1326 YPDLCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCE 1396 (2492)
Q Consensus 1326 ~~~LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~ 1396 (2492)
.|+||....-++ +|||.||+||++|+||+||+|+.++..+||+|+.+.+|..+++||+|++++|++++++.
T Consensus 267 ~pYLCtgydv~ll~EPC~MCsMALvHsRikRvfy~~~~s~~G~L~s~~~i~~~k~LNhry~vfr~~~e~d~~ 338 (344)
T KOG2771|consen 267 FPYLCTGYDVYLLHEPCAMCSMALVHSRIKRVFYCKPMSTAGGLGSLYRIHQRKSLNHRYEVFRGYLEEDPI 338 (344)
T ss_pred cceeeecceEEEecChHHHHHHHHHHHhhhheeeccCCCCCCCccceeEeeeccccCcceEEEEeecccccc
Confidence 589999995555 79999999999999999999999988899999999999999999999999999998886
No 180
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.00 E-value=3.5e-09 Score=134.08 Aligned_cols=61 Identities=20% Similarity=0.317 Sum_probs=51.1
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHH
Q psy15223 447 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507 (2492)
Q Consensus 447 ~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a 507 (2492)
..+++.+|--.-|+|+|+||+||++|-++.|.++|-.+..||+|.-..=....|..+-.-+
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~ 77 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLA 77 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHH
Confidence 3457899999999999999999999999999999999999999998888889998876544
No 181
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.90 E-value=2.7e-09 Score=117.98 Aligned_cols=76 Identities=22% Similarity=0.198 Sum_probs=68.2
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q psy15223 1605 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 1684 (2492)
Q Consensus 1605 ~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~ 1684 (2492)
..+.|||||.+|+||++++++.|+++||.|++|++|.++.|+|.+|.++...+.+. +..+++ |+..+++.
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~---~~~~~~-------~~~~~~~~ 71 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK---GENAKA-------FVERWIER 71 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc---CCCHHH-------HHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999998766 566666 77778888
Q ss_pred HHHHHH
Q psy15223 1685 QKMDFM 1690 (2492)
Q Consensus 1685 ~~~~~~ 1690 (2492)
++++++
T Consensus 72 ~~~~~~ 77 (143)
T cd00802 72 IKEDVE 77 (143)
T ss_pred HHHHHH
Confidence 888776
No 182
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.87 E-value=3.5e-09 Score=117.10 Aligned_cols=76 Identities=22% Similarity=0.198 Sum_probs=67.9
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHH
Q psy15223 455 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 534 (2492)
Q Consensus 455 ~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~ 534 (2492)
..+.|||||.+|+||+++.++.|+++||.|++|++|.++.|+|.+|.+|...+.+. +..+++ ++..+++.
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~---~~~~~~-------~~~~~~~~ 71 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK---GENAKA-------FVERWIER 71 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc---CCCHHH-------HHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999998775 566766 77777778
Q ss_pred HHHHHH
Q psy15223 535 QKMDFM 540 (2492)
Q Consensus 535 ~~~~~~ 540 (2492)
++++++
T Consensus 72 ~~~~~~ 77 (143)
T cd00802 72 IKEDVE 77 (143)
T ss_pred HHHHHH
Confidence 888776
No 183
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.85 E-value=4.2e-08 Score=124.36 Aligned_cols=60 Identities=20% Similarity=0.347 Sum_probs=50.6
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHH
Q psy15223 1598 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 1657 (2492)
Q Consensus 1598 ~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a 1657 (2492)
..++.+|-..-|+|+|+||+||++|-++.|.++|-.+..||+|.-..=....|..+-.-+
T Consensus 18 ~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~ 77 (354)
T PF00750_consen 18 KGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLA 77 (354)
T ss_dssp TSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHH
T ss_pred CCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHH
Confidence 457889999999999999999999999999999999999999999988899998876543
No 184
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.77 E-value=2.1e-08 Score=125.39 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=93.1
Q ss_pred CCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccc---hhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHh-
Q psy15223 115 KNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACG---SIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK- 190 (2492)
Q Consensus 115 ~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g---~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~- 190 (2492)
.|.++|+|+|||.-|+.+|+.+||+|||+++ ||++.+.| .+++.|+++|+. | .|++++||..+++.|++.
T Consensus 44 ~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~-D~d~~G~~~~~~~~~~L~~aGi~----V-~~~l~~e~~~l~~~~~~~i 117 (360)
T PRK14719 44 NANFITVSNTPVFQIADDLIAENISEVILLT-DFDRAGRVYAKNIMEEFQSRGIK----V-NNLIRKEIIKYSRGDLKDI 117 (360)
T ss_pred CCcEEEEeCCchHHHHHHHHHcCCCEEEEEE-CCCCCCCccchHHHHHHHHCCCE----E-EeehHHHHHHHhHHhhhcc
Confidence 3789999999999999999999999999999 88874333 348999999997 5 479999999998876533
Q ss_pred --------------------ccCcccccccccccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEe
Q psy15223 191 --------------------RRNFVKNKSINIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFN 244 (2492)
Q Consensus 191 --------------------~~~~~~~~~a~m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~d 244 (2492)
+|||++.|.|..--.++ .. ..|..- |++++++.. |-||.. -|.|.|.-
T Consensus 118 e~~~~~~~~~~~~~~~~~~~~rP~V~lK~A~SLDGkI--A~--~~G~s~-IT~~~ar~~vh~lRa~-~DAILVG~ 186 (360)
T PRK14719 118 ESLYPYISRRININSDLSDIMLPYVISNVGMTLDGKL--AT--IENDSR-ISGENDLKRVHEIRKD-VDAIMVGI 186 (360)
T ss_pred hhhhhhheeccccccccccCCCCeEEEEEEEcCcCcc--cC--CCCCCC-cCCHHHHHHHHHHHHH-CCEEEECc
Confidence 69999999998332333 21 134444 899999987 999998 46666643
No 185
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=98.76 E-value=7.5e-08 Score=102.54 Aligned_cols=116 Identities=21% Similarity=0.268 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q psy15223 1059 EILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSED 1138 (2492)
Q Consensus 1059 ~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ 1138 (2492)
+.++++.+..+++||+++++.....+..+.. ........|+|++++++++++++.++|++|+|++|++.+++|++.
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~- 77 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKW---DNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNE- 77 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc---ChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 4567778889999999999766544322211 001235679999999999999999999999999999999999954
Q ss_pred hhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15223 1139 LGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPIL 1183 (2492)
Q Consensus 1139 ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPil 1183 (2492)
+ ++|++..|+|.+.. ..+..++.+++.++..++++|+|||
T Consensus 78 ~-n~y~~~~~pw~~~~----~~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 78 L-NWYLDELKPALQTE----ELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred c-cHHHHHhhHHHcCc----hhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4 99999999998865 2344677899999999999999996
No 186
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=98.74 E-value=1.1e-07 Score=101.30 Aligned_cols=116 Identities=21% Similarity=0.273 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhh
Q psy15223 2209 EILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSED 2288 (2492)
Q Consensus 2209 ~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ 2288 (2492)
+.++++.+..+++||+++++.....+..+... .......|+|++++++++.+.++++|++|+|++|++.+++|++.
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~- 77 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKWD---NELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNE- 77 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcC---hhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 45677888999999999987654433222110 01235679999999999999999999999999999999999954
Q ss_pred hhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccc
Q psy15223 2289 LGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPIL 2333 (2492)
Q Consensus 2289 ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~ 2333 (2492)
+ |+|++..|+|.+.. .....++.++..+++.++++|+|||
T Consensus 78 ~-n~y~~~~~pw~~~~----~~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 78 L-NWYLDELKPALQTE----ELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred c-cHHHHHhhHHHcCc----hhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4 99999999998764 2344567789999999999999996
No 187
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=98.64 E-value=1e-07 Score=93.83 Aligned_cols=83 Identities=20% Similarity=0.183 Sum_probs=65.8
Q ss_pred cceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhcc--------------------CcccCCCeEEEEcCC
Q psy15223 66 VPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLN--------------------NYRFSKNYKIYVTLE 124 (2492)
Q Consensus 66 ~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~--------------------~~~l~~~~~ly~t~E 124 (2492)
.-|-|.+| ++|.+++.+.|... .|.+.|||+|.+.-.-...- ...+..|++||||+.
T Consensus 8 R~VvA~lv~~~G~l~daa~NtNa--~N~~LHAE~NLl~p~~~~~~~~~~~~~d~~~~~~g~g~~~~~~l~~ga~l~vTlq 85 (136)
T PF14439_consen 8 RRVVAALVSPDGELVDAAVNTNA--DNKMLHAEWNLLMPWLWREWVDSPTDDDEIGNRPGDGPEERRPLPPGARLLVTLQ 85 (136)
T ss_pred cceeEEEECCCCcEEEeeeccCC--ccceeehhhhhhhHHHHhhcccCCCcccccccCCCcchhhcCcCCCCcEEEEech
Confidence 34566666 68999999999764 47799999999977665431 124667999999999
Q ss_pred ChHhHHHHHHHhCC-------ceEEEecCCCCC
Q psy15223 125 PCAMCAGAIIHVRL-------GEIIYGTPSFKT 150 (2492)
Q Consensus 125 PC~mC~~ai~~~gi-------~rvv~g~~~~~~ 150 (2492)
||.||++.+.+++- .+|||+..+|-.
T Consensus 86 cCkMCAalv~a~~d~pg~~~~~~vvY~~ed~G~ 118 (136)
T PF14439_consen 86 CCKMCAALVCAASDRPGRRVPIDVVYLNEDPGS 118 (136)
T ss_pred hHHHHHHHHHHHhhCcCCccceEEEEecCCCCc
Confidence 99999999999865 789999877543
No 188
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.2e-06 Score=109.60 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=77.5
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCC--------chHHHHHHHHhCcCCC--HHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHG--------MPIEIQIEKLYGKNLS--PIE 519 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hG--------lpiE~~a~k~~~~~~~--~~e 519 (2492)
.++++-+|. .|+|.+|||++.-.+..|++.|-.|-+|+.|.++.=||.+- +|-....++-+|..++ |.-
T Consensus 19 ~~~~v~tGi-sPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATGI-SPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEEecCc-CCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 678888887 89999999999999999999999999999999999999885 5654556666665322 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccc
Q psy15223 520 IQNKARALAYEKIEQQKMDFMRLGILG 546 (2492)
Q Consensus 520 ~~~~~~~~a~~~i~~~~~~~~~lGi~~ 546 (2492)
+- -|..|++.+...+.+.+.++|+-.
T Consensus 98 ~G-~~~Sya~hf~~~f~~~l~~~Gi~~ 123 (521)
T COG1384 98 FG-CCDSYAEHFLRPFEEFLDEFGIEV 123 (521)
T ss_pred cc-ccchHHHHHHHHHHHHHHhcCCce
Confidence 11 577899999999999999999844
No 189
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=4.9e-07 Score=113.10 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=74.6
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCC--------hHHHHHHHHHhccCCC--HHH
Q psy15223 1600 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHG--------MPIEIQIEKLYGKNLS--PIE 1669 (2492)
Q Consensus 1600 ~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hG--------lPie~~a~k~~~~~~~--~~e 1669 (2492)
.++++-.| =.|||.+|+|.++-.+..|++.|-.|-+|+.|.+++=||..- +|-....++-+|.-++ |.-
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEEecC-cCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 56766555 479999999999999999999999999999999999999874 5654556666665221 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15223 1670 IQNKARALAYEKIEQQKMDFMRLGILG 1696 (2492)
Q Consensus 1670 ~~~~~~~~~~~~i~~~~~~~~~lGi~~ 1696 (2492)
+. -|..|++.+...+.+.+.++|+-.
T Consensus 98 ~G-~~~Sya~hf~~~f~~~l~~~Gi~~ 123 (521)
T COG1384 98 FG-CCDSYAEHFLRPFEEFLDEFGIEV 123 (521)
T ss_pred cc-ccchHHHHHHHHHHHHHHhcCCce
Confidence 11 467899999999999999999844
No 190
>KOG1018|consensus
Probab=98.47 E-value=1.1e-07 Score=105.10 Aligned_cols=77 Identities=25% Similarity=0.524 Sum_probs=65.3
Q ss_pred chhhhhh-ccCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecc--cCCCceEEEccccHHHHHHHHHHHHhcc
Q psy15223 1330 CNRCFNN-LFEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEK--KLNHHTILTGGVMQKQCEKLLKSFFIKR 1406 (2492)
Q Consensus 1330 C~RC~~~-v~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~--~~~~~~~~~~g~l~~e~~~l~~~f~~~r 1406 (2492)
+..|..+ ..|||+||++||.|+||++||||+.|+++|+.|+........ .+.+.+....|+..+++..+++.||.+.
T Consensus 83 ls~~tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~f~~~~ 162 (169)
T KOG1018|consen 83 LSETTLYVTCEPCPMCAGALAQSGVKRVVFGASNERFGGIGFVLRGNKDFLKRLGASVISRDGIEKKEAQKLLIAFYVRD 162 (169)
T ss_pred ccCCEEEEEecccHHHHHHHHHcCCCEEEEecccccccccceeeeehhhhhccCCcceEeccchhhHHhhhHHHhhcccc
Confidence 4556444 479999999999999999999999999999999999875543 4556789999999999999999997654
No 191
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=98.40 E-value=2e-07 Score=110.90 Aligned_cols=57 Identities=53% Similarity=0.957 Sum_probs=53.9
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCccccc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRA 57 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a~~~a 57 (2492)
|.|+|++++++||||||||.+||+++..+|+++..+|++++++|||+|||.|...+.
T Consensus 160 s~e~a~~~~d~G~yisisG~itfk~a~~~~ev~~~iPldrLL~ETDsPyl~P~p~rG 216 (256)
T COG0084 160 SAEEARKLLDLGFYISISGIVTFKNAEKLREVARELPLDRLLLETDAPYLAPVPYRG 216 (256)
T ss_pred CHHHHHHHHHcCeEEEECceeecCCcHHHHHHHHhCCHhHeEeccCCCCCCCcCCCC
Confidence 679999999999999999999999999999999999999999999999999986554
No 192
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=98.32 E-value=3.9e-07 Score=115.57 Aligned_cols=89 Identities=20% Similarity=0.293 Sum_probs=70.7
Q ss_pred hhhhhhc-cCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHH
Q psy15223 1331 NRCFNNL-FEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFF 1403 (2492)
Q Consensus 1331 ~RC~~~v-~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~ 1403 (2492)
..|..++ .||| +||++||+|+||+|||||+.++..+..|+....+.. +.++|.+|++++||.+|++.||
T Consensus 58 ~g~tlyvtlEPC~~~g~~~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~----~gi~v~~~~~~~e~~~l~~~f~ 133 (344)
T TIGR00326 58 KGATAYVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLKQ----AGIEVTFGILKEEAERLNKGFL 133 (344)
T ss_pred CCcEEEEeCCCCCCCCCCcHHHHHHHHcCCCEEEEEeCCCCccccchHHHHHhc----CCcEEEeCCCHHHHHHHHHHHH
Confidence 4674454 6999 799999999999999999999988887766555444 3579999999999999999999
Q ss_pred hcccc--ceeEEEEecCCCchH
Q psy15223 1404 IKRRN--FVKNKIQALPENRKF 1423 (2492)
Q Consensus 1404 ~~rr~--~~~~l~~a~~k~~~~ 1423 (2492)
..++. +-+.+..++.=..++
T Consensus 134 ~~~~~~rP~v~~~~a~SLDG~I 155 (344)
T TIGR00326 134 KRMRTGLPYVQLKLAASLDGKI 155 (344)
T ss_pred HhhhcCCCEEEEEEeeCCCCCc
Confidence 87664 447777776644443
No 193
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.29 E-value=5.4e-07 Score=114.36 Aligned_cols=89 Identities=17% Similarity=0.240 Sum_probs=71.4
Q ss_pred hhhhhhc-cCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHH
Q psy15223 1331 NRCFNNL-FEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFF 1403 (2492)
Q Consensus 1331 ~RC~~~v-~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~ 1403 (2492)
..|..++ .||| +||++||+++||+|||||++++..+..|+....+. ++.++|++|++++||.++++.||
T Consensus 64 ~g~tlyvTlEPC~~~g~t~mC~~aii~agI~rVv~~~~dp~~~~~g~~~~~l~----~~gi~v~~~~~~~e~~~l~~~f~ 139 (367)
T PRK10786 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQ----QAGIDVSHGLMMSEAEALNKGFL 139 (367)
T ss_pred CCCEEEEecCCccCCCCChHHHHHHHHhCCCEEEEecCCCCcccCchHHHHHh----cCCcEEEcCCcHHHHHHHHHHHH
Confidence 3564444 6999 89999999999999999999999888876554433 35789999999999999999999
Q ss_pred hccc--cceeEEEEecCCCchH
Q psy15223 1404 IKRR--NFVKNKIQALPENRKF 1423 (2492)
Q Consensus 1404 ~~rr--~~~~~l~~a~~k~~~~ 1423 (2492)
..+| .+.+++-+|+.=..++
T Consensus 140 ~~~~~~rP~V~~k~A~SlDGki 161 (367)
T PRK10786 140 KRMRTGFPYIQLKLGASLDGRT 161 (367)
T ss_pred HHhhcccceEEEEEeecCCCCc
Confidence 7754 5557888887755543
No 194
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=98.24 E-value=3.8e-07 Score=95.64 Aligned_cols=45 Identities=38% Similarity=0.770 Sum_probs=39.0
Q ss_pred Ccchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceE
Q psy15223 1328 DLCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSII 1372 (2492)
Q Consensus 1328 ~LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~ 1372 (2492)
..|..|..++ .|||+||++||+|+||+||||+.+++..|++|+..
T Consensus 63 ~~~~~~~ly~t~EPC~mC~~ai~~~gi~~Vvy~~~~~~~g~~~~~~ 108 (109)
T cd01285 63 YLLSGCTLYTTLEPCPMCAGALLWARIKRVVYGASDPKLGGIGFLI 108 (109)
T ss_pred CccCCeEEEEeCCChHHHHHHHHHHCCCEEEEEecCCcccccccCC
Confidence 3577775555 69999999999999999999999999999988764
No 195
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=98.15 E-value=1.5e-06 Score=109.90 Aligned_cols=89 Identities=18% Similarity=0.282 Sum_probs=71.6
Q ss_pred hhhhh-hccCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHH
Q psy15223 1331 NRCFN-NLFEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFF 1403 (2492)
Q Consensus 1331 ~RC~~-~v~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~ 1403 (2492)
..|.. +..||| +||++||+++||+|||||+.++..+..|...+.+.. +.++|..|++++||.+|++.||
T Consensus 93 ~g~tlyvTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~~~g~g~~~l~~----~gi~V~~g~~~~e~~~l~~~f~ 168 (380)
T PLN02807 93 ENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGIERLRD----AGIEVTVGVEEELCRKLNEAFI 168 (380)
T ss_pred CCcEEEEEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCccccchHHHHHHh----CCCEEEeCcCHHHHHHHHHHHH
Confidence 35644 447999 899999999999999999999988776665554433 3479999999999999999999
Q ss_pred hc--cccceeEEEEecCCCchH
Q psy15223 1404 IK--RRNFVKNKIQALPENRKF 1423 (2492)
Q Consensus 1404 ~~--rr~~~~~l~~a~~k~~~~ 1423 (2492)
.. +..+-+++-.|+.-..++
T Consensus 169 ~~~~~~rP~V~lK~A~SlDGki 190 (380)
T PLN02807 169 HRMLTGKPFVTLRYSMSMNGCL 190 (380)
T ss_pred HHHhhccccEEEEEEEcCCCCe
Confidence 65 456778888888777654
No 196
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=98.00 E-value=1.4e-05 Score=85.93 Aligned_cols=81 Identities=22% Similarity=0.276 Sum_probs=62.3
Q ss_pred ccccccccc-cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEE----cCCChH
Q psy15223 54 PHRAKLALI-AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV----TLEPCA 127 (2492)
Q Consensus 54 ~~~a~~~~~-~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~----t~EPC~ 127 (2492)
.+.++++.. -.+.||||+|+ +||+|+. |.|......+++.|||++||.++...... .+. ...++. +..||.
T Consensus 8 ~~a~~~ay~PyS~~~vgAa~~~~~G~i~~-G~n~e~~~~~~s~~AE~~Ai~~a~~~g~~-~i~-~i~vv~~~~~~~sPCG 84 (127)
T TIGR01354 8 QEARKNAYAPYSNFKVGAALLTKDGRIFT-GVNVENASYPLTICAERSAIGKAISAGYR-KFV-AIAVADSADDPVSPCG 84 (127)
T ss_pred HHHHHhcCCCcCCCeEEEEEEeCCCCEEE-EEeecccCCCCCcCHHHHHHHHHHHcCCC-CeE-EEEEEeCCCCCcCccH
Confidence 334444443 24689999999 6799887 99999888999999999999999987543 442 233433 579999
Q ss_pred hHHHHHHHhC
Q psy15223 128 MCAGAIIHVR 137 (2492)
Q Consensus 128 mC~~ai~~~g 137 (2492)
||...|...+
T Consensus 85 ~Crq~l~e~~ 94 (127)
T TIGR01354 85 ACRQVLAEFA 94 (127)
T ss_pred HHHHHHHHhC
Confidence 9999999987
No 197
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.85 E-value=1.9e-05 Score=97.22 Aligned_cols=104 Identities=29% Similarity=0.397 Sum_probs=54.3
Q ss_pred cCceeeecccchhh--hhHHHHHHHH-HHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHh
Q psy15223 2120 FPADLYLEGSDQHR--GWFHSSLLTS-IILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r--~wf~~~l~~~-~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
.-+|+=..|+||.- |=+...-..+ ..+...+| .-+.-.|+++..|.|||||+||+++|.|.++-+.+++|||+++
T Consensus 233 lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP--~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~ 310 (360)
T PF01921_consen 233 LGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPP--VPFPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMA 310 (360)
T ss_dssp TT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-------EEEEE--EEES--------------HHHHHTTS-HHHHHHHHH
T ss_pred cCceeccCCCccCCCCCChhhHHHHHHHHhCCCCC--CCCCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHc
Confidence 35777888999986 3334444445 33444444 4566788888888899999999999999999999999999999
Q ss_pred ccCCCCcccccHH-HHHHHHHHHHHHHHHH
Q psy15223 2197 STDYSKDLSISNE-ILNRVVETYRRIRNTL 2225 (2492)
Q Consensus 2197 s~~~~~d~~fs~~-~l~~~~~~~~kl~n~~ 2225 (2492)
.+.+.+..+|+.+ .+-+..+.|.++.+.+
T Consensus 311 ~~~P~~~~~~~~~~~i~~~~Deyd~~~~~y 340 (360)
T PF01921_consen 311 RTKPNKAKDFSFDLVIPRLYDEYDRLERKY 340 (360)
T ss_dssp CS-TTS-EEE--STTHHHHHHHHHHHHHHH
T ss_pred ccCCCcceEeccCcchHHHHHHHHHHHHHh
Confidence 8777776666666 5555666666555443
No 198
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=97.83 E-value=1.5e-05 Score=96.86 Aligned_cols=54 Identities=28% Similarity=0.533 Sum_probs=50.9
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCcc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIP 54 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a~ 54 (2492)
|.++|++++++||||||+|.++++++..+++++..+|+++++.|||.|||.+..
T Consensus 162 ~~~~a~~~l~~G~~iS~~g~it~~~~~~~~~~~~~ipldriL~ETD~P~l~p~~ 215 (258)
T PRK11449 162 SLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNG 215 (258)
T ss_pred CHHHHHHHHHCCCEEEeCccccccCcHHHHHHHHhCChhhEEEecCCCCCCCCC
Confidence 578999999999999999999999999999999999999999999999997653
No 199
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.65 E-value=5.2e-05 Score=93.46 Aligned_cols=103 Identities=29% Similarity=0.394 Sum_probs=53.0
Q ss_pred Ceeeeecccccch--hhHHHHHHHH-HHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc
Q psy15223 971 PADLYLEGSDQHR--GWFHSSLLTS-IILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 971 p~Dl~~~G~D~~r--gwf~s~l~~~-~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s 1047 (2492)
-+|+=..|+||.- |=+...-..+ ..+...+| .-+.-.|+++..|.|||||+||+++|+|.++-+.+++|||+++.
T Consensus 234 gVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP--~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~ 311 (360)
T PF01921_consen 234 GVDFEPFGKDHASPGGSYDTSKRIAREILGYEPP--VPFPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMAR 311 (360)
T ss_dssp T-SEEEEEHHHHCTTSHHHHHHHHHHHCC-------EEEEE--EEES--------------HHHHHTTS-HHHHHHHHHC
T ss_pred CceeccCCCccCCCCCChhhHHHHHHHHhCCCCC--CCCCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHcc
Confidence 4677778999996 3344444555 44444444 33456788888888999999999999999999999999999999
Q ss_pred cCcccccccCHH-HHHHHHHHHHHHHHHH
Q psy15223 1048 TDYSKDLSISNE-ILNRVVETYRRIRNTL 1075 (2492)
Q Consensus 1048 ~~~~~d~~fs~~-~l~~~~~~~~kl~n~~ 1075 (2492)
+.+.+..+|+.+ .+-+..+.|.++.+.+
T Consensus 312 ~~P~~~~~~~~~~~i~~~~Deyd~~~~~y 340 (360)
T PF01921_consen 312 TKPNKAKDFSFDLVIPRLYDEYDRLERKY 340 (360)
T ss_dssp S-TTS-EEE--STTHHHHHHHHHHHHHHH
T ss_pred cCCCcceEeccCcchHHHHHHHHHHHHHh
Confidence 777776666655 4555555555554443
No 200
>PRK10425 DNase TatD; Provisional
Probab=97.60 E-value=4.7e-05 Score=92.40 Aligned_cols=54 Identities=28% Similarity=0.501 Sum_probs=48.7
Q ss_pred CHHHHHHHHHcCcEEEecccccc-cccHHHHHHhhhcccCccccccCCCCCCCcc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTF-KNSKILQKVMGSISLKNMLIETDSPYLSPIP 54 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~etD~~~M~~a~ 54 (2492)
|.++|++++++||||||+|.+++ +++..+++++..+|++++++|||.|||.|..
T Consensus 157 ~~~~~~~~l~~G~~~si~g~i~~~~~~~~~~~~~~~ipldrlLlETDaP~l~P~~ 211 (258)
T PRK10425 157 TREEMQACLARGLYIGITGWVCDERRGLELRELLPLIPAERLLLETDAPYLLPRD 211 (258)
T ss_pred CHHHHHHHHHCCCEEEECceeecccccHHHHHHHHhCChHHEEEeccCCCCCCCC
Confidence 57899999999999999998876 5567899999999999999999999998754
No 201
>PRK10812 putative DNAse; Provisional
Probab=97.56 E-value=6.6e-05 Score=91.60 Aligned_cols=54 Identities=50% Similarity=0.960 Sum_probs=50.7
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCcc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIP 54 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a~ 54 (2492)
|.++|++++++||||||+|.+++++++.+++++..+|++++++|||.|||.|..
T Consensus 160 ~~~~a~~~~~~G~~is~~g~~t~~~~~~~~~~~~~ipldrlLlETD~P~~~p~~ 213 (265)
T PRK10812 160 DRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVP 213 (265)
T ss_pred CHHHHHHHHHCCCEEEECeeeecCccHHHHHHHHhCChhhEEEecCCCCCCCcC
Confidence 568999999999999999999999999999999999999999999999997753
No 202
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.39 E-value=0.00025 Score=83.61 Aligned_cols=93 Identities=22% Similarity=0.323 Sum_probs=66.6
Q ss_pred cCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Q psy15223 1606 DGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQ 1685 (2492)
Q Consensus 1606 ~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~ 1685 (2492)
==+|.|||.||+||+++.++.++++| ++++.|+.=+|..--+.. .|+ ..+.+.+
T Consensus 5 RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~------------------~~~---~~~~~~i 58 (240)
T cd09287 5 RFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK------------------RPD---PEAYDMI 58 (240)
T ss_pred eCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc------------------cch---HHHHHHH
Confidence 34799999999999999999999999 566666666665422221 011 2233458
Q ss_pred HHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1686 KMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1686 ~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
.++++.||+ +|+..|+.++ +...-+....+|.++|++|.
T Consensus 59 ~~dL~wLGl--~~d~~~~qS~--r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 59 PEDLEWLGV--KWDEVVIASD--RIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHHcCC--CCCCccchhc--cHHHHHHHHHHHHHcCCccc
Confidence 899999999 8887766554 23333445688899999997
No 203
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=97.37 E-value=4.4e-05 Score=80.23 Aligned_cols=44 Identities=20% Similarity=0.350 Sum_probs=35.1
Q ss_pred hhhhhhc-cCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEee
Q psy15223 1331 NRCFNNL-FEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINL 1374 (2492)
Q Consensus 1331 ~RC~~~v-~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~ 1374 (2492)
..|..++ .||| +||++||+|+||+|||||++++..+..++..++
T Consensus 60 ~g~tly~TlEPC~~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~~~~~g~~~ 110 (115)
T cd01284 60 RGATLYVTLEPCSHHGKTPPCVDAIIEAGIKRVVVGVRDPNPLVAGKGAER 110 (115)
T ss_pred CCeEEEEeCCCCCCCCCchHHHHHHHHHCcCEEEEEecCCCcccccHHHHH
Confidence 4564444 6999 899999999999999999999987766554443
No 204
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=97.31 E-value=3.1e-05 Score=60.63 Aligned_cols=30 Identities=40% Similarity=0.916 Sum_probs=22.9
Q ss_pred CCCCccccccccccCCCCCCCCcchhhhhh
Q psy15223 1307 YKKCNRCWHYQADVGERDDYPDLCNRCFNN 1336 (2492)
Q Consensus 1307 ~~kC~RCw~~~~~v~~~~~~~~LC~RC~~~ 1336 (2492)
|+||+|||++..+++.+..++.+|+||+.+
T Consensus 1 G~~C~rC~~~~~~~~~~~r~~~~C~rCq~v 30 (30)
T PF06827_consen 1 GEKCPRCWNYIEDIGINGRSTYLCPRCQKV 30 (30)
T ss_dssp TSB-TTT--BBEEEEETTEEEEE-TTTCCH
T ss_pred CCcCccCCCcceEeEecCCCCeECcCCcCC
Confidence 689999999999998888889999999864
No 205
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=97.28 E-value=0.00011 Score=82.48 Aligned_cols=63 Identities=16% Similarity=0.281 Sum_probs=41.3
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHH
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLL 1399 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~ 1399 (2492)
+..|..++ .|||+||++||+++||+||||+...+.... .....+. +..++|.. +..+++..++
T Consensus 99 ~~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~~~--~~~~~L~----~~Gi~v~~-~~~~~~~~~~ 162 (168)
T PHA02588 99 IEGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDRNGP--GWDDILR----KSGIEVIQ-IPKEELNKLN 162 (168)
T ss_pred CCCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCCCcH--HHHHHHH----HCCCEEEE-eCHHHHHhhh
Confidence 45675554 699999999999999999999987543321 1122212 24567664 5566655444
No 206
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.26 E-value=0.00038 Score=91.60 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=68.8
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==+|.|||.||+|||++.++.+.++| +|+..|+.=+|.+---| .. ...++.
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~--------------~R-------~~~e~~ 155 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRT--------------KR-------PDPEAY 155 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCc--------------cc-------chHHHH
Confidence 45557999999999999999999999999 34444444445431111 11 122345
Q ss_pred HHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.++++.||+ +|+..|++++ |...-.....+|.++|++|.-
T Consensus 156 ~~I~edL~wLGl--~wD~~~~qSd--r~~~y~~~a~~Li~~G~AY~C 198 (567)
T PRK04156 156 DMILEDLKWLGV--KWDEVVIQSD--RLEIYYEYARKLIEMGGAYVC 198 (567)
T ss_pred HHHHHHHHHcCC--CCCCccCccc--CHHHHHHHHHHHHHcCCCccC
Confidence 788999999999 8988877765 334445567789999999753
No 207
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=97.16 E-value=0.00033 Score=85.61 Aligned_cols=52 Identities=48% Similarity=0.894 Sum_probs=47.2
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSP 52 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~ 52 (2492)
|.+++++++++|+||||+|.++++++++.+++++.+|++++++|||.|||.+
T Consensus 160 ~~~~~~~~~~~g~~~S~~~~~~~~~~~~~~~~~~~ip~drillETD~P~~~~ 211 (255)
T PF01026_consen 160 SPEEAKKFLDLGCYFSFSGAITFKNSKKVRELIKAIPLDRILLETDAPYLAP 211 (255)
T ss_dssp -HHHHHHHHHTTEEEEEEGGGGSTTSHHHHHHHHHS-GGGEEEE-BTTSSEC
T ss_pred CHHHHHHHHhcCceEEecccccccccHHHHHHHhcCChhhEEEcCCCCcCCc
Confidence 4689999999999999999999999999999999999999999999999987
No 208
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.13 E-value=0.00076 Score=79.63 Aligned_cols=92 Identities=22% Similarity=0.327 Sum_probs=66.1
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 457 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 536 (2492)
Q Consensus 457 gPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~ 536 (2492)
=+|.|||.+|+||+++.++.++++| ++++.|+-=+|..--+.. .|+ ..+.+.+.
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~------------------~~~---~~~~~~i~ 59 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK------------------RPD---PEAYDMIP 59 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc------------------cch---HHHHHHHH
Confidence 4789999999999999999999999 566666655554433221 111 22344588
Q ss_pred HHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 537 MDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 537 ~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
++++.||+ +||.+|+.++ +...-.....+|.++|++|.
T Consensus 60 ~dL~wLGl--~~d~~~~qS~--r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 60 EDLEWLGV--KWDEVVIASD--RIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHcCC--CCCCccchhc--cHHHHHHHHHHHHHcCCccc
Confidence 99999999 8887766544 33344455788999999997
No 209
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.10 E-value=0.00076 Score=88.82 Aligned_cols=96 Identities=20% Similarity=0.291 Sum_probs=67.9
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+.+==||.|||.||||||++.++.+.++| +|...|+.=+|..---| .. ...++.
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~--------------~R-------~~~e~~ 155 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRT--------------KR-------PDPEAY 155 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCc--------------cc-------chHHHH
Confidence 44557899999999999999999999999 33344443344331111 11 123355
Q ss_pred HHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 533 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.+.++++.||+ +|+..|+++| +-..-.....+|.++|++|.
T Consensus 156 ~~I~edL~wLGl--~wD~~~~qSd--r~~~y~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 156 DMILEDLKWLGV--KWDEVVIQSD--RLEIYYEYARKLIEMGGAYV 197 (567)
T ss_pred HHHHHHHHHcCC--CCCCccCccc--CHHHHHHHHHHHHHcCCCcc
Confidence 889999999999 8988777655 33445567788999999875
No 210
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=97.05 E-value=4.3e-05 Score=59.85 Aligned_cols=30 Identities=40% Similarity=0.916 Sum_probs=21.9
Q ss_pred CCCCcccceEecCCCCCCCCCCCChhhHHh
Q psy15223 2457 YKKCNRCWHYQADVGERDDYPDLCNRCFNN 2486 (2492)
Q Consensus 2457 ~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~ 2486 (2492)
|.||+|||++..+++.+..+..+|+||.+|
T Consensus 1 G~~C~rC~~~~~~~~~~~r~~~~C~rCq~v 30 (30)
T PF06827_consen 1 GEKCPRCWNYIEDIGINGRSTYLCPRCQKV 30 (30)
T ss_dssp TSB-TTT--BBEEEEETTEEEEE-TTTCCH
T ss_pred CCcCccCCCcceEeEecCCCCeECcCCcCC
Confidence 579999999998887777788999999754
No 211
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.02 E-value=0.001 Score=87.48 Aligned_cols=96 Identities=22% Similarity=0.259 Sum_probs=70.2
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q psy15223 1602 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 1681 (2492)
Q Consensus 1602 f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~ 1681 (2492)
-+++==||.|||.||+|||++.++.+.++|- ..|. |+.=+|.+ +|.. -..++
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar~--~~G~---~iLRidDT----------------Dp~R-------~~~e~ 144 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKK--YKGK---LIIRFDDT----------------DPRR-------VKPEA 144 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCE---EEEEeCcC----------------Cccc-------ccHHH
Confidence 3677889999999999999999999999962 2444 44334433 2211 12346
Q ss_pred HHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1682 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1682 i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
.+.+.++++.||+ +|+..++++| |.........+|.++|++|..
T Consensus 145 ~~~I~edL~wLGi--~~d~~~~qSd--~~~~y~~~a~~Li~~G~AY~C 188 (560)
T TIGR00463 145 YDMILEDLDWLGV--KGDEVVYQSD--RIEEYYDYCRKLIEMGKAYVC 188 (560)
T ss_pred HHHHHHHHHHcCC--CCCccccccc--cHHHHHHHHHHHHHcCCceee
Confidence 7889999999999 5887776665 445556677899999999874
No 212
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.01 E-value=0.0014 Score=84.36 Aligned_cols=91 Identities=21% Similarity=0.236 Sum_probs=67.4
Q ss_pred cCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHH
Q psy15223 456 DGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQ 535 (2492)
Q Consensus 456 dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~ 535 (2492)
==+|-|||.||+|||++-+..-.++|-+ .|.-++.+==+| ++. ...++.+.+
T Consensus 6 RFAPSPTG~lHiG~artAL~n~l~Ar~~--gG~fiLRIEDTD-------------------~~R-------s~~~~~~~I 57 (445)
T PRK12558 6 RFAPSPTGYLHVGNARTALLNWLYARKH--GGKFILRIDDTD-------------------LER-------SKQEYADAI 57 (445)
T ss_pred EeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEeccCC-------------------ccc-------chHHHHHHH
Confidence 3479999999999999999998888853 555555443333 222 234577899
Q ss_pred HHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 536 KMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 536 ~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+++|+.||+ +||..|.-.+- ......+..+|.++|++|+
T Consensus 58 ~e~L~wLGI--~~De~y~QSer--~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 58 AEDLKWLGI--NWDRTFRQSDR--FDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred HHHHHHcCC--CCCccccHHHH--HHHHHHHHHHHHHCCCEEE
Confidence 999999999 67776654332 2467888999999999995
No 213
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=96.92 E-value=0.00055 Score=72.48 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=53.6
Q ss_pred hhhccCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhcc
Q psy15223 1334 FNNLFEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKR 1406 (2492)
Q Consensus 1334 ~~~v~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~r 1406 (2492)
.+|..||| |.|+.||+.++|+|||++..++.....|.....+. .++++|..|+|.+|+..|++-|+.+.
T Consensus 71 ~yVTLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~----~aGi~V~~gil~~e~~~l~~~f~~~~ 145 (146)
T COG0117 71 AYVTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLR----AAGIEVEVGILEEEAEKLNEGFLKRM 145 (146)
T ss_pred EEEEecCcccCCCCcchHHHHHHhCCCEEEEEecCCCccccCchHHHHH----HcCCeEEEehhHHHHHHHHHHHHccc
Confidence 34456888 89999999999999999999886443443333333 35669999999999999999997654
No 214
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=96.84 E-value=0.00038 Score=72.31 Aligned_cols=26 Identities=46% Similarity=0.958 Sum_probs=21.2
Q ss_pred hhccCCccchhHHHHHhccCeEEeCC
Q psy15223 1335 NNLFEPCAMCAGAIIHVRLGEIIYGT 1360 (2492)
Q Consensus 1335 ~~v~~~c~mC~~a~~~~~i~~vv~g~ 1360 (2492)
.+..|||+||++||+|+||+|||||.
T Consensus 77 yvt~ePC~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 77 YVTLEPCGMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp EEEE--BHHHHHHHHHHTSSEEEEEE
T ss_pred ccCCCCHHHHHHHHHHHCcCeEEEeC
Confidence 34579999999999999999999973
No 215
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=96.74 E-value=0.0038 Score=80.55 Aligned_cols=92 Identities=21% Similarity=0.245 Sum_probs=66.6
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q psy15223 1605 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 1684 (2492)
Q Consensus 1605 ~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~ 1684 (2492)
+==+|-|||.||+||+++.+..-.++|-+ .|.-++.+==+| ++. ...++.+.
T Consensus 5 ~RFAPSPTG~lHiG~artAL~n~l~Ar~~--gG~fiLRIEDTD-------------------~~R-------s~~~~~~~ 56 (445)
T PRK12558 5 TRFAPSPTGYLHVGNARTALLNWLYARKH--GGKFILRIDDTD-------------------LER-------SKQEYADA 56 (445)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEeccCC-------------------ccc-------chHHHHHH
Confidence 34579999999999999999888888753 555555443232 211 23456789
Q ss_pred HHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1685 QKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1685 ~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
++++|+.||+ +||..|.-++ .......+..+|.++|++|+
T Consensus 57 I~e~L~wLGI--~~De~y~QSe--r~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 57 IAEDLKWLGI--NWDRTFRQSD--RFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred HHHHHHHcCC--CCCccccHHH--HHHHHHHHHHHHHHCCCEEE
Confidence 9999999999 6776654433 23467888899999999985
No 216
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=96.73 E-value=0.0026 Score=83.61 Aligned_cols=93 Identities=25% Similarity=0.358 Sum_probs=70.2
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==||-|||.||||||++-++...++|-+ .|.-++.+ | +.+|.. -..++.
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~--gG~~iLRi---E----------------DTDp~R-------~~~e~~ 104 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKY--KGKLVFRF---D----------------DTNPSK-------EKEHFE 104 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEE---c----------------CCCCcc-------cCHHHH
Confidence 6778899999999999999999999999853 55544433 2 333332 234567
Q ss_pred HHHHHHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCCceE
Q psy15223 1683 EQQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVY 1727 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kGliy 1727 (2492)
+.+.++++-||+ +||. +|+++| |-..-.....+|.++|++|
T Consensus 105 d~IleDL~WLGl--~wDe~~~~QSd--r~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 105 QAILDDLATLGV--SWDVGPTYSSD--YMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred HHHHHHHHHCCC--CCCCceeeccc--cHHHHHHHHHHHHHcCCEE
Confidence 899999999999 8986 677665 3444556778999999998
No 217
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=96.72 E-value=0.0026 Score=82.89 Aligned_cols=95 Identities=26% Similarity=0.265 Sum_probs=71.6
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==||.|||.||+|||++-++...+||-+ .|.-++.+ | +.+|+. -..+++
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~~--gG~~iLRi---E----------------DTDp~R-------~~~e~~ 63 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARRY--KGRLILRF---D----------------DTNPSK-------EKAEFE 63 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEE---C----------------CCCCCc-------cchHHH
Confidence 5677899999999999999999999999753 56555443 2 233322 234577
Q ss_pred HHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.++++-||+ +|+..|.+++ |-..-.....+|.++|++|.-
T Consensus 64 ~~I~~dL~WLGl--~wD~~~~qSd--r~~~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 64 ESIIEDLGKIEI--KPDSVSFTSD--YFEPIRCYAIILIEEGLAYMD 106 (523)
T ss_pred HHHHHHHHHhCC--CCCCCccccc--cHHHHHHHHHHHHHcCCeEec
Confidence 889999999999 7888877765 334455678899999999874
No 218
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=96.71 E-value=0.00057 Score=69.99 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=23.7
Q ss_pred hhhccCCccchhHHHHHhccCeEEeCC
Q psy15223 1334 FNNLFEPCAMCAGAIIHVRLGEIIYGT 1360 (2492)
Q Consensus 1334 ~~~v~~~c~mC~~a~~~~~i~~vv~g~ 1360 (2492)
..+..|||.||++||+|+||++|||+.
T Consensus 69 ly~tlePC~mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 69 LYVALSPCGACAQLIIELGIKDVIVVL 95 (96)
T ss_pred EEEECCChHHHHHHHHHhCCCCEEEee
Confidence 334469999999999999999999985
No 219
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=96.70 E-value=0.00072 Score=73.26 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=28.1
Q ss_pred hhhhhh-ccCCccchhHHHHHhccCeEEeCCCCcC
Q psy15223 1331 NRCFNN-LFEPCAMCAGAIIHVRLGEIIYGTPSFK 1364 (2492)
Q Consensus 1331 ~RC~~~-v~~~c~mC~~a~~~~~i~~vv~g~~~~~ 1364 (2492)
..|..+ ..+||+||++||+|+||+||||+.+.+.
T Consensus 87 ~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~ 121 (131)
T cd01286 87 EGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDD 121 (131)
T ss_pred CCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCc
Confidence 345444 4699999999999999999999988664
No 220
>PRK06848 hypothetical protein; Validated
Probab=96.68 E-value=0.002 Score=70.04 Aligned_cols=85 Identities=19% Similarity=0.162 Sum_probs=60.2
Q ss_pred CCCCcccccccccccCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc-----
Q psy15223 49 YLSPIPHRAKLALIAGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT----- 122 (2492)
Q Consensus 49 ~M~~a~~~a~~~~~~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t----- 122 (2492)
.+..|.+..+.+..-.+.+|||++. +||+|+ +|.|-.......+.|||..||-+|...... .+. +.+-++
T Consensus 10 L~~~A~~a~~~ay~ps~f~VgAa~l~~~G~i~-~G~NvEnas~~~tiCAEr~Ai~~av~~g~~-~i~--~i~~v~~~~~~ 85 (139)
T PRK06848 10 LIKAAEKVIEKRYRNDWHHVGAALRTKTGRIY-AAVHLEAYVGRITVCAEAIAIGKAISEGDH-EID--TIVAVRHPKPH 85 (139)
T ss_pred HHHHHHHHHHhccCCCCCcEEEEEEeCCCCEE-EEEEeecCCCCcccCHHHHHHHHHHHcCCC-ceE--EEEEEecCccc
Confidence 4444444555554445799999999 688877 999977666677899999999998765332 222 222222
Q ss_pred --------CCChHhHHHHHHHhC
Q psy15223 123 --------LEPCAMCAGAIIHVR 137 (2492)
Q Consensus 123 --------~EPC~mC~~ai~~~g 137 (2492)
..||-+|-..|.+.+
T Consensus 86 ~~~~~~~~~~PCG~CRQvl~E~~ 108 (139)
T PRK06848 86 EDDREIWVVSPCGACRELISDYG 108 (139)
T ss_pred ccccCCCccCCChhhHHHHHHhC
Confidence 459999999999985
No 221
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=96.66 E-value=0.00092 Score=73.82 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=26.0
Q ss_pred hhhhhhc-cCCccchhHHHHHhccCeEEeCCC
Q psy15223 1331 NRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTP 1361 (2492)
Q Consensus 1331 ~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~ 1361 (2492)
..|..++ .|||+||++||+|+||+||||+..
T Consensus 86 ~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~ 117 (151)
T TIGR02571 86 EGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQD 117 (151)
T ss_pred CCcEEEEeCCCcHHHHHHHHHhCCCEEEEccC
Confidence 4564444 699999999999999999999854
No 222
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=96.63 E-value=0.0039 Score=73.50 Aligned_cols=92 Identities=28% Similarity=0.256 Sum_probs=66.4
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q psy15223 1605 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 1684 (2492)
Q Consensus 1605 ~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~ 1684 (2492)
+==+|.|||.||+||+++.++.-.++|-+ .|.-++.+ | +.++.. ...++.+.
T Consensus 4 ~RFAPsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLRi---e----------------DtD~~R-------~~~~~~~~ 55 (238)
T cd00807 4 TRFPPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLRF---D----------------DTNPEK-------EEEEYVDS 55 (238)
T ss_pred EecCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe---c----------------CCCCcc-------cchHHHHH
Confidence 34579999999999999999999998753 45444433 2 333332 23356678
Q ss_pred HHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1685 QKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1685 ~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.++++-+|+ +||..|..++ +...-+....+|.++|++|.
T Consensus 56 I~~dL~wlGl--~wD~~~~QS~--r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 56 IKEDVKWLGI--KPYKVTYASD--YFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred HHHHHHHcCC--CCCCceeccc--CHHHHHHHHHHHHHcCCeec
Confidence 9999999999 8887766654 22334556788999999999
No 223
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=96.63 E-value=0.0039 Score=82.06 Aligned_cols=93 Identities=24% Similarity=0.351 Sum_probs=70.8
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+++==||-|||.||||||.+-++...++|-+ .|.-++.+ | +.+|.. -..+++
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~--gG~~iLRi----------E---------DTDp~R-------~~~e~~ 104 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKY--KGKLVFRF----------D---------DTNPSK-------EKEHFE 104 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEE----------c---------CCCCcc-------cCHHHH
Confidence 6677899999999999999999999999853 45444322 2 344443 234578
Q ss_pred HHHHHHHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcCCeE
Q psy15223 533 EQQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVY 577 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kGliy 577 (2492)
+.+.++++-||+ +||. +|++.| |-..-.....+|.++|++|
T Consensus 105 d~IleDL~WLGl--~wDe~~~~QSd--r~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 105 QAILDDLATLGV--SWDVGPTYSSD--YMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred HHHHHHHHHCCC--CCCCceeeccc--cHHHHHHHHHHHHHcCCEE
Confidence 899999999999 8986 676655 3455566788999999998
No 224
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=96.59 E-value=0.0036 Score=82.51 Aligned_cols=96 Identities=22% Similarity=0.227 Sum_probs=70.1
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHH
Q psy15223 452 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 531 (2492)
Q Consensus 452 f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~ 531 (2492)
-+++==||.|||.||||||.+.++.+.++|- ..|.-++. +|. .+|.. -..++
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar~--~~G~~iLR---idD----------------TDp~R-------~~~e~ 144 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKK--YKGKLIIR---FDD----------------TDPRR-------VKPEA 144 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCEEEEE---eCc----------------CCccc-------ccHHH
Confidence 3677789999999999999999999999973 24443333 332 23321 12347
Q ss_pred HHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 532 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 532 i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
.+.+.++++-||+ +|+..|+++| |.........+|.++|+.|..
T Consensus 145 ~~~I~edL~wLGi--~~d~~~~qSd--~~~~y~~~a~~Li~~G~AY~C 188 (560)
T TIGR00463 145 YDMILEDLDWLGV--KGDEVVYQSD--RIEEYYDYCRKLIEMGKAYVC 188 (560)
T ss_pred HHHHHHHHHHcCC--CCCccccccc--cHHHHHHHHHHHHHcCCceee
Confidence 8899999999999 5887766554 445556778899999999874
No 225
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=96.52 E-value=0.0047 Score=80.60 Aligned_cols=95 Identities=25% Similarity=0.246 Sum_probs=72.2
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+++==||-|||.||||||.+-++...++|-+ .|.-++.+= +.+|+. -..+++
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~~--gG~~iLRiE-------------------DTDp~R-------~~~e~~ 63 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARRY--KGRLILRFD-------------------DTNPSK-------EKAEFE 63 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEEC-------------------CCCCCc-------cchHHH
Confidence 5677799999999999999999999999853 465544331 334433 234578
Q ss_pred HHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 533 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.+.++++-||+ +|+..|++.+ |-..-.....+|.++|++|.-
T Consensus 64 ~~I~~dL~WLGl--~wD~~~~qSd--r~~~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 64 ESIIEDLGKIEI--KPDSVSFTSD--YFEPIRCYAIILIEEGLAYMD 106 (523)
T ss_pred HHHHHHHHHhCC--CCCCCccccc--cHHHHHHHHHHHHHcCCeEec
Confidence 899999999999 7888877655 334555678899999999874
No 226
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=96.51 E-value=0.0051 Score=80.38 Aligned_cols=93 Identities=29% Similarity=0.392 Sum_probs=65.1
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q psy15223 1605 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 1684 (2492)
Q Consensus 1605 ~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~ 1684 (2492)
+==||-|||.||+|||++.++...+||- ..|.-++.+ |. .+|.. -..++++.
T Consensus 3 tRFaPsPtG~LHiG~ar~al~n~~~A~~--~~G~~iLRi---eD----------------Td~~r-------~~~e~~~~ 54 (522)
T TIGR00440 3 TRFPPEPNGYLHIGHAKSICLNFGYAKY--YNGTCNLRF---DD----------------TNPVK-------EDPEYVES 54 (522)
T ss_pred EecCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEE---cC----------------CCccc-------CChHHHHH
Confidence 3358999999999999999999999974 356554443 22 22221 23356788
Q ss_pred HHHHHHHhcccccc-cCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1685 QKMDFMRLGILGEW-DNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1685 ~~~~~~~lGi~~Dw-~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.++++-||+ +| +..|.+++-. ..-.....+|.++|++|..
T Consensus 55 I~~dL~wLG~--~~d~~~~~qS~~~--~~~~~~a~~Li~~G~AY~c 96 (522)
T TIGR00440 55 IKRDVEWLGF--KWEGKIRYSSDYF--DELYRYAEELIKKGLAYVD 96 (522)
T ss_pred HHHHHHHcCC--CCCCCceEccccH--HHHHHHHHHHHHcCCEEee
Confidence 9999999999 78 4567666521 2222344799999999974
No 227
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=96.50 E-value=0.0026 Score=82.85 Aligned_cols=95 Identities=19% Similarity=0.029 Sum_probs=69.4
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+.+==||-|||.||+|||.+-++...++|.+ .|.-++.+= +.+|+. -..++.
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~~--gG~~iLRiE-------------------DTDp~r-------~~~e~~ 103 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARAH--GGKCYLRYD-------------------DTNPET-------EEQVYI 103 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEEC-------------------CCCccc-------cChHHH
Confidence 4566789999999999999999999999864 454444321 334433 334578
Q ss_pred HHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 533 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.+.++|+-||+ +|+..+.+ + .|.........+|.++|++|.-
T Consensus 104 ~~I~~dL~wLGi--~~D~~~~q-S-~y~~~~ye~A~~Li~~G~AY~C 146 (574)
T PTZ00437 104 DAIMEMVKWMGW--KPDWVTFS-S-DYFDQLHEFAVQLIKDGKAYVD 146 (574)
T ss_pred HHHHHHHHHcCC--CCCCCCcC-c-hhHHHHHHHHHHHHHcCCEEEc
Confidence 899999999999 78877654 2 3333445666789999999874
No 228
>PLN02907 glutamate-tRNA ligase
Probab=96.49 E-value=0.0041 Score=85.30 Aligned_cols=94 Identities=26% Similarity=0.326 Sum_probs=71.3
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==||-|||.||||||++-++...++|- ..|.-++.+ | +.+|.. -..+++
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLR~---e----------------DTdp~r-------~~~e~~ 265 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFARR--YKGKLIVRF---D----------------DTNPSK-------ESDEFV 265 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEe---c----------------CCCCCc-------CChHHH
Confidence 677889999999999999999999999983 456555443 2 223322 223577
Q ss_pred HHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.+.++++-||+ +|+..|+++| |-..-.....+|.++|++|.
T Consensus 266 ~~I~~dl~wLG~--~~d~~~~qS~--r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 266 ENILKDIETLGI--KYDAVTYTSD--YFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred HHHHHHHHHcCC--CCCCcccccc--cHHHHHHHHHHHHHcCCeee
Confidence 899999999999 8888887766 23344567789999999996
No 229
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=96.49 E-value=0.0026 Score=74.90 Aligned_cols=92 Identities=27% Similarity=0.249 Sum_probs=67.4
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHH
Q psy15223 455 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 534 (2492)
Q Consensus 455 ~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~ 534 (2492)
+==+|.|||.||+||+++-++.-.++|-+ .|.-++.+ | +.++.. ...++.+.
T Consensus 4 ~RFAPsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLRi----------e---------DtD~~R-------~~~~~~~~ 55 (238)
T cd00807 4 TRFPPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLRF----------D---------DTNPEK-------EEEEYVDS 55 (238)
T ss_pred EecCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe----------c---------CCCCcc-------cchHHHHH
Confidence 33479999999999999999999999853 45444322 2 344433 23457789
Q ss_pred HHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 535 QKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 535 ~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.++++-||+ +||.+|...+ +-..-.....+|.++|++|.
T Consensus 56 I~~dL~wlGl--~wD~~~~QS~--r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 56 IKEDVKWLGI--KPYKVTYASD--YFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred HHHHHHHcCC--CCCCceeccc--CHHHHHHHHHHHHHcCCeec
Confidence 9999999999 8887766544 23344567889999999999
No 230
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=96.46 E-value=0.0061 Score=79.56 Aligned_cols=95 Identities=20% Similarity=0.041 Sum_probs=68.9
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==||-|||.||+|||++.++...+||.+ .|.-++.+ | +.+|+. -..++.
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~~--gG~~iLRi---E----------------DTDp~r-------~~~e~~ 103 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARAH--GGKCYLRY---D----------------DTNPET-------EEQVYI 103 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEE---C----------------CCCccc-------cChHHH
Confidence 4667899999999999999999999999863 45444433 2 233332 234567
Q ss_pred HHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.++|+-||+ +|+..+.++ .|.........+|.++|++|.-
T Consensus 104 ~~I~~dL~wLGi--~~D~~~~qS--~y~~~~ye~A~~Li~~G~AY~C 146 (574)
T PTZ00437 104 DAIMEMVKWMGW--KPDWVTFSS--DYFDQLHEFAVQLIKDGKAYVD 146 (574)
T ss_pred HHHHHHHHHcCC--CCCCCCcCc--hhHHHHHHHHHHHHHcCCEEEc
Confidence 889999999999 788776553 3333444666789999999874
No 231
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=96.42 E-value=0.0061 Score=73.95 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=66.3
Q ss_pred CCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15223 458 PPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 537 (2492)
Q Consensus 458 PPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~~ 537 (2492)
+|-|||.||+|||++-++...++|- ..|.-++.+== .++.. ...++.+.+.+
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar~--~gG~~iLRiED-------------------tD~~R-------~~~~~~~~I~~ 57 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDARA--HGGRWLVRIED-------------------LDPPR-------EVPGAADDILR 57 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEeCc-------------------CCCCC-------CChHHHHHHHH
Confidence 6999999999999999999999994 36666654432 23322 22346789999
Q ss_pred HHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 538 DFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 538 ~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+|+-||+ +||. +|+..+ +...-.....+|.++|++|.-
T Consensus 58 dL~wLGl--~wDe~~~~QS~--r~~~Y~~~~~~L~~~G~aY~C 96 (272)
T TIGR03838 58 TLEAYGL--HWDGEVVYQSQ--RHALYQAALDRLLAAGLAYPC 96 (272)
T ss_pred HHHHcCC--CCCCCeeeeeC--CHHHHHHHHHHHHHcCCEEec
Confidence 9999999 8885 465544 223445677899999999863
No 232
>KOG3020|consensus
Probab=96.34 E-value=0.0025 Score=76.87 Aligned_cols=51 Identities=39% Similarity=0.664 Sum_probs=46.5
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
|+|+|++++++|+||||+|.+.... .-.++++.+|++||++|||+||+.+-
T Consensus 185 s~e~~~~~lk~~~yig~~g~~~k~~--e~~~vlr~iP~erlllETDsP~~~pk 235 (296)
T KOG3020|consen 185 SAEEAQKLLKLGLYIGFTGCSLKTE--ENLEVLRSIPLERLLLETDSPYCGPK 235 (296)
T ss_pred CHHHHHHHHHccEEecccceeeech--hhHHHHhhCCHhHeeeccCCccccCC
Confidence 5799999999999999999888766 77799999999999999999999763
No 233
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=96.29 E-value=0.0073 Score=79.06 Aligned_cols=93 Identities=27% Similarity=0.278 Sum_probs=67.3
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==||-|||.||+|||++-++...+||.+ .|.-++.+ |. .+|+. -..+++
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~--~G~~iLRi---eD----------------Td~~r-------~~~e~~ 81 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDY--GGKCNLRF---DD----------------TNPEK-------EDQEYV 81 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEE---CC----------------CCCCc-------CChHHH
Confidence 6778899999999999999999999999853 45444433 32 23322 234567
Q ss_pred HHHHHHHHHhcccccc-cCeeccCC--hHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEW-DNSYKTMD--FLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw-~~~y~T~d--~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.++++-||+ +| +..|.+++ +.|++. -.+|.++|++|.-
T Consensus 82 ~~I~~dL~wLGi--~~d~~~~~qS~r~~~~y~~----a~~Li~~G~AY~c 125 (554)
T PRK05347 82 DSIKEDVRWLGF--DWSGELRYASDYFDQLYEY----AVELIKKGKAYVD 125 (554)
T ss_pred HHHHHHHHHcCC--CCCCCceeeecCHHHHHHH----HHHHHHcCCEeeC
Confidence 889999999999 77 56677765 224433 3599999999874
No 234
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.0057 Score=79.38 Aligned_cols=95 Identities=22% Similarity=0.303 Sum_probs=69.4
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==+|.|||.||+|||++-++...+||-+ .|.-++.+== .+|+. -..++.
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~--~G~fiLRiED-------------------TD~~R-------~~~e~~ 61 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKY--GGKFILRIED-------------------TDPER-------ETPEAE 61 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHh--CCEEEEEecC-------------------CCCCC-------CCHHHH
Confidence 6777899999999999999999999999863 5655554422 22221 233466
Q ss_pred HHHHHHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.++|+-||+ +||. +|+.++ +-..-...-.+|.++|+.|.-
T Consensus 62 ~~I~~~L~WLGl--~wde~~~~QS~--r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 62 DAILEDLEWLGL--DWDEGPYYQSE--RFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred HHHHHHHHhcCC--CCCCceeehhh--hHHHHHHHHHHHHHCCCeEEe
Confidence 789999999999 9998 577765 222233456689999999865
No 235
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=96.24 E-value=0.0071 Score=77.72 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=66.9
Q ss_pred CCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15223 458 PPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 537 (2492)
Q Consensus 458 PPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~~ 537 (2492)
+|-|||.||+|||++-++.-.++|- ..|.-++.+==+ ++.. ...++.+.+.+
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~--~gG~fiLRiEDT-------------------D~~R-------~~~e~~~~I~~ 56 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFLIRIEDT-------------------DKER-------NIEGKDKEILE 56 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcC-------------------CCCc-------CChHHHHHHHH
Confidence 6899999999999999999999985 356655544322 3322 23457789999
Q ss_pred HHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 538 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 538 ~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+|+-||+ |||.+|+.++- -..-.....+|.++|.+|.-
T Consensus 57 ~L~WlGl--~wDe~y~QSeR--~~~Y~~~a~~Li~~G~AY~C 94 (433)
T PRK12410 57 ILNLFGI--SWDKLVYQSEN--LKFHRQMAEKLLSEKKAFAC 94 (433)
T ss_pred HHHHcCC--CCCCCeehhcc--HHHHHHHHHHHHHcCCeeee
Confidence 9999999 89988887662 12334578899999998763
No 236
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=96.23 E-value=0.012 Score=73.55 Aligned_cols=91 Identities=26% Similarity=0.344 Sum_probs=58.6
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 1607 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 1686 (2492)
Q Consensus 1607 ~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~ 1686 (2492)
=+|-|||.||+||+++-++.-.++| +..|.-++.+==+| +.. -..++.+.+.
T Consensus 6 FAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD-------------------~~R-------~~~~~~~~i~ 57 (314)
T PF00749_consen 6 FAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTD-------------------PER-------CRPEFYDAIL 57 (314)
T ss_dssp E---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSS-------------------TTT-------CHHHHHHHHH
T ss_pred eCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEeccccc-------------------ccc-------chhhHHHHHH
Confidence 3799999999999999999999998 45566555542222 211 1234567889
Q ss_pred HHHHHhccccccc-CeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1687 MDFMRLGILGEWD-NSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1687 ~~~~~lGi~~Dw~-~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
++|+.||+ +|| .+|..++ +-..-+....+|.++|++|.-
T Consensus 58 ~~L~wlGl--~~D~~~~~QS~--r~~~Y~~~~~~L~~~g~aY~C 97 (314)
T PF00749_consen 58 EDLRWLGL--EWDYGPYYQSD--RLEIYQEAAEKLIDKGKAYPC 97 (314)
T ss_dssp HHHHHHT-----STCEEEGGG--GHHHHHHHHHHHHHTTSEEEE
T ss_pred hheeEEEE--ecCCeEEeHHH--HHHHHHHHHHHHhhcCCCccc
Confidence 99999999 776 7777765 222334556688999999864
No 237
>PLN02907 glutamate-tRNA ligase
Probab=96.23 E-value=0.0083 Score=82.33 Aligned_cols=94 Identities=24% Similarity=0.306 Sum_probs=71.8
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+++==||-|||.||||||.+-++...++|. ..|.-++.+= +.+|.. -..+++
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLR~e-------------------DTdp~r-------~~~e~~ 265 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFARR--YKGKLIVRFD-------------------DTNPSK-------ESDEFV 265 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEec-------------------CCCCCc-------CChHHH
Confidence 667789999999999999999999999984 3565544331 333432 224578
Q ss_pred HHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 533 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.+.++++-||+ +||..|+++| |-..-.....+|.++|++|.
T Consensus 266 ~~I~~dl~wLG~--~~d~~~~qS~--r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 266 ENILKDIETLGI--KYDAVTYTSD--YFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred HHHHHHHHHcCC--CCCCcccccc--cHHHHHHHHHHHHHcCCeee
Confidence 899999999999 8998887765 33344667889999999996
No 238
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=96.22 E-value=0.0098 Score=78.41 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=67.4
Q ss_pred EEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHH
Q psy15223 454 LHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIE 533 (2492)
Q Consensus 454 l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~ 533 (2492)
.+==+|-|||.||+||+++-+..-.++|-+ .|.-++.+= +.++.. ....+++
T Consensus 6 ~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~--~G~fiLRie-------------------DtD~~R-------~~~~~~~ 57 (476)
T PRK01406 6 RTRFAPSPTGYLHIGGARTALFNWLFARHH--GGKFILRIE-------------------DTDQER-------STEEAEE 57 (476)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeC-------------------cCCCCC-------CChHHHH
Confidence 344579999999999999999999999853 555444432 223322 3345778
Q ss_pred HHHHHHHHccccccccCe--------eecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 534 QQKMDFMRLGILGEWDNS--------YKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 534 ~~~~~~~~lGi~~Dw~~~--------y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
.+.++|+-||+ +||.. |+.++- -..-.....+|.++|.+|+
T Consensus 58 ~i~~~L~wlGl--~~De~p~~~~~gpy~QS~r--~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 58 AILEGLKWLGL--DWDEGPDGGPYGPYRQSER--LDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred HHHHHHHHCCC--CCCCCCccCCCCceehhcC--HHHHHHHHHHHHHcCCeee
Confidence 99999999999 88854 776552 1344566789999999996
No 239
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=96.22 E-value=0.0079 Score=75.32 Aligned_cols=90 Identities=26% Similarity=0.349 Sum_probs=59.1
Q ss_pred CCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15223 458 PPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 537 (2492)
Q Consensus 458 PPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~~ 537 (2492)
+|-|||.||+|||++-++.-.++| ...|.-++.+= +.++.. -..++.+.+.+
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRie-------------------DtD~~R-------~~~~~~~~i~~ 58 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIE-------------------DTDPER-------CRPEFYDAILE 58 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEE-------------------TSSTTT-------CHHHHHHHHHH
T ss_pred CCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecc-------------------cccccc-------chhhHHHHHHh
Confidence 689999999999999999999998 44565555432 233322 12346788999
Q ss_pred HHHHcccccccc-CeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 538 DFMRLGILGEWD-NSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 538 ~~~~lGi~~Dw~-~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+|+-||+ +|| .+|..++- -..-.....+|.++|++|.-
T Consensus 59 ~L~wlGl--~~D~~~~~QS~r--~~~Y~~~~~~L~~~g~aY~C 97 (314)
T PF00749_consen 59 DLRWLGL--EWDYGPYYQSDR--LEIYQEAAEKLIDKGKAYPC 97 (314)
T ss_dssp HHHHHT-----STCEEEGGGG--HHHHHHHHHHHHHTTSEEEE
T ss_pred heeEEEE--ecCCeEEeHHHH--HHHHHHHHHHHhhcCCCccc
Confidence 9999999 886 77776652 22334567789999999873
No 240
>PLN02627 glutamyl-tRNA synthetase
Probab=96.21 E-value=0.019 Score=75.12 Aligned_cols=94 Identities=19% Similarity=0.287 Sum_probs=67.7
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+.+==+|-|||.||+|||++-++.-.++|- ..|.-++.+==+ +++. ...++.
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~--~gG~fiLRIEDT-------------------D~~R-------~~~e~~ 97 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDT-------------------DLAR-------STKESE 97 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH--hCCEEEEEeCcC-------------------CCCC-------CChHHH
Confidence 455557799999999999999999999994 456665544322 2222 234577
Q ss_pred HHHHHHHHHccccccccC---------eeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 533 EQQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.+.++|+-||+ |||. +|+-++- -..-.....+|.++|.+|+
T Consensus 98 ~~I~~~L~WLGl--~wDegp~~gg~~gpy~QSeR--~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 98 EAVLRDLKWLGL--DWDEGPDVGGEYGPYRQSER--NAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred HHHHHHHHHcCC--CCCcCcccCCCCCCeeeecc--HHHHHHHHHHHHHcCCeee
Confidence 899999999999 8985 3555442 2333456789999999996
No 241
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=96.21 E-value=0.013 Score=71.10 Aligned_cols=91 Identities=16% Similarity=0.202 Sum_probs=66.3
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 1607 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 1686 (2492)
Q Consensus 1607 ~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~ 1686 (2492)
=+|-|||.||+||+++.++...++| +..|.-++.+==+| +.. ...++.+.+.
T Consensus 5 FAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD-------------------~~R-------~~~~~~~~I~ 56 (272)
T TIGR03838 5 FAPSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLD-------------------PPR-------EVPGAADDIL 56 (272)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCC-------------------CCC-------CChHHHHHHH
Confidence 3799999999999999999999998 34676666553333 211 1234667899
Q ss_pred HHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1687 MDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1687 ~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
++|+.||+ +||. +|+.++ +...-.....+|.++|++|.-
T Consensus 57 ~dL~wLGl--~wDe~~~~QS~--r~~~Y~~~~~~L~~~G~aY~C 96 (272)
T TIGR03838 57 RTLEAYGL--HWDGEVVYQSQ--RHALYQAALDRLLAAGLAYPC 96 (272)
T ss_pred HHHHHcCC--CCCCCeeeeeC--CHHHHHHHHHHHHHcCCEEec
Confidence 99999999 8885 466554 223445567899999999864
No 242
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=96.17 E-value=0.0099 Score=72.97 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=66.4
Q ss_pred EEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHH
Q psy15223 454 LHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIE 533 (2492)
Q Consensus 454 l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~ 533 (2492)
++==+|-|||.||+||+++-++.-.++|-+ .|.-++.+= +.++.. -..++.+
T Consensus 7 ~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRiE-------------------DtD~~R-------~~~~~~~ 58 (299)
T PRK05710 7 IGRFAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRIE-------------------DIDPPR-------EVPGAAD 58 (299)
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEEC-------------------cCCCCc-------cchHHHH
Confidence 344578999999999999999999999854 354444332 222322 2234678
Q ss_pred HHHHHHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 534 QQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 534 ~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
.+.++|+.||+ +||. +|+.++ .-..-..+..+|.++|++|.
T Consensus 59 ~I~~dL~wlGl--~wDe~~~~QS~--r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 59 AILADLEWLGL--HWDGPVLYQSQ--RHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred HHHHHHHHCCC--CCCCCceEeec--cHHHHHHHHHHHHHCCCcee
Confidence 99999999999 8984 666555 23344567889999999876
No 243
>PLN02859 glutamine-tRNA ligase
Probab=96.13 E-value=0.0093 Score=80.53 Aligned_cols=95 Identities=22% Similarity=0.187 Sum_probs=68.1
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+.+==||-|||.||+|||++-++...+||.+ .|.-.+.+ |. .+|+. -..+++
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~LRi---eD----------------Tdp~r-------~~~e~~ 316 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYLRF---DD----------------TNPEA-------EKKEYI 316 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe---cC----------------CCCCc-------cchHHH
Confidence 5667799999999999999999999999874 45544433 32 23322 234577
Q ss_pred HHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.++++-||+ +|+..|+++|-. ... ...-.+|.++|++|..
T Consensus 317 ~~I~edL~WLG~--~~d~~~~qSd~f-~~~-Y~~A~~Li~~G~AY~C 359 (788)
T PLN02859 317 DHIEEIVEWMGW--EPFKITYTSDYF-QEL-YELAVELIRRGHAYVD 359 (788)
T ss_pred HHHHHHHHHcCC--CCCCcccccHhH-HHH-HHHHHHHHHcCCeEec
Confidence 889999999996 898888877532 111 1234569999999874
No 244
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=96.13 E-value=0.0051 Score=80.43 Aligned_cols=93 Identities=27% Similarity=0.328 Sum_probs=67.5
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+++==||-|||.||+|||.+-++...++|.+ .|.-++.+ | +.+|+. -..+++
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~--~G~~iLRi---e----------------DTd~~r-------~~~e~~ 81 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDY--GGKCNLRF---D----------------DTNPEK-------EDQEYV 81 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEE---C----------------CCCCCc-------CChHHH
Confidence 6677899999999999999999999999853 45444332 1 333333 234578
Q ss_pred HHHHHHHHHccccccc-cCeeecCCh--HHHHHHHHHHHHHHHcCCeEEe
Q psy15223 533 EQQKMDFMRLGILGEW-DNSYKTMDF--LNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw-~~~y~T~d~--~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.+.++++-||+ +| +.+|++.+- .|++ .-.+|.++|++|.-
T Consensus 82 ~~I~~dL~wLGi--~~d~~~~~qS~r~~~~y~----~a~~Li~~G~AY~c 125 (554)
T PRK05347 82 DSIKEDVRWLGF--DWSGELRYASDYFDQLYE----YAVELIKKGKAYVD 125 (554)
T ss_pred HHHHHHHHHcCC--CCCCCceeeecCHHHHHH----HHHHHHHcCCEeeC
Confidence 899999999999 77 566777652 2333 33599999999874
No 245
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=96.08 E-value=0.013 Score=76.74 Aligned_cols=92 Identities=28% Similarity=0.376 Sum_probs=65.4
Q ss_pred cCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHH
Q psy15223 456 DGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQ 535 (2492)
Q Consensus 456 dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~ 535 (2492)
==||-|||.||+|||.+-++...++|- ..|.-++.+= +.+|.. -..++++.+
T Consensus 4 RFaPsPtG~LHiG~ar~al~n~~~A~~--~~G~~iLRie-------------------DTd~~r-------~~~e~~~~I 55 (522)
T TIGR00440 4 RFPPEPNGYLHIGHAKSICLNFGYAKY--YNGTCNLRFD-------------------DTNPVK-------EDPEYVESI 55 (522)
T ss_pred ecCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEEc-------------------CCCccc-------CChHHHHHH
Confidence 348999999999999999999999984 3555544332 233322 224578899
Q ss_pred HHHHHHccccccc-cCeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 536 KMDFMRLGILGEW-DNSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 536 ~~~~~~lGi~~Dw-~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
.++++-||+ +| +.+|.+.|- -..-.....+|.++|++|..
T Consensus 56 ~~dL~wLG~--~~d~~~~~qS~~--~~~~~~~a~~Li~~G~AY~c 96 (522)
T TIGR00440 56 KRDVEWLGF--KWEGKIRYSSDY--FDELYRYAEELIKKGLAYVD 96 (522)
T ss_pred HHHHHHcCC--CCCCCceEcccc--HHHHHHHHHHHHHcCCEEee
Confidence 999999999 88 456766552 12222445799999999874
No 246
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=96.07 E-value=0.012 Score=77.67 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=66.8
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+.+==+|-|||.||+||+++-+..-.++|-+ .|.-++.+==+ ++.. ....+.
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~--~G~fiLRieDt-------------------D~~R-------~~~~~~ 56 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALFNWLFARHH--GGKFILRIEDT-------------------DQER-------STEEAE 56 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeCcC-------------------CCCC-------CChHHH
Confidence 3445689999999999999999999988753 55544444222 2221 334567
Q ss_pred HHHHHHHHHhcccccccCe--------eccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1683 EQQKMDFMRLGILGEWDNS--------YKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~--------y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.+.++|+-||+ +||.. |+.++- -..-.....+|.++|.+|+
T Consensus 57 ~~i~~~L~wlGl--~~De~p~~~~~gpy~QS~r--~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 57 EAILEGLKWLGL--DWDEGPDGGPYGPYRQSER--LDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred HHHHHHHHHCCC--CCCCCCccCCCCceehhcC--HHHHHHHHHHHHHcCCeee
Confidence 789999999999 88854 666652 1333556778999999996
No 247
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=96.07 E-value=0.02 Score=61.01 Aligned_cols=78 Identities=23% Similarity=0.274 Sum_probs=57.6
Q ss_pred cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEE--c----CCChHhHHHHHHH
Q psy15223 63 AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV--T----LEPCAMCAGAIIH 135 (2492)
Q Consensus 63 ~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~--t----~EPC~mC~~ai~~ 135 (2492)
-.+.+|||++. +||+|+ +|.|-...+.--+.|||..||-+|-.. +...+. .+++ . .-||-||-.-|..
T Consensus 23 YS~F~VGAa~~t~~G~i~-tG~NiEnasy~~t~CAErsAI~~ais~-G~~~~~---~v~v~~~~~~~~sPCG~CRQ~i~E 97 (134)
T COG0295 23 YSKFKVGAALRTKDGRIY-TGANVENASYGLTVCAERSAIFKAISE-GKRKFD---AVVVVADTGKPVSPCGACRQVLAE 97 (134)
T ss_pred ccCCcEEEEEEeCCCCEE-EEEeeecccccchhhHHHHHHHHHHHc-CCCcEE---EEEEEcCCCCCcCCcHHHHHHHHH
Confidence 34799999999 677755 999988777777999999999999887 433332 3444 2 5699999999998
Q ss_pred hC-CceEEEec
Q psy15223 136 VR-LGEIIYGT 145 (2492)
Q Consensus 136 ~g-i~rvv~g~ 145 (2492)
.. =...++-.
T Consensus 98 f~~~d~~ii~~ 108 (134)
T COG0295 98 FCGDDTLIILL 108 (134)
T ss_pred hcCCCceEEEe
Confidence 65 33444443
No 248
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.01 Score=77.02 Aligned_cols=95 Identities=22% Similarity=0.311 Sum_probs=70.4
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+.+==+|-|||.||||||++-++-..++|.+ .|.-++-+= +.+|+. -..++.
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~--~G~fiLRiE-------------------DTD~~R-------~~~e~~ 61 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKY--GGKFILRIE-------------------DTDPER-------ETPEAE 61 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHh--CCEEEEEec-------------------CCCCCC-------CCHHHH
Confidence 6667789999999999999999999999954 566555442 233322 233567
Q ss_pred HHHHHHHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 533 EQQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.+.++|+-||+ +||. +|+.++ +-..-...-.+|.++|+.|.-
T Consensus 62 ~~I~~~L~WLGl--~wde~~~~QS~--r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 62 DAILEDLEWLGL--DWDEGPYYQSE--RFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred HHHHHHHHhcCC--CCCCceeehhh--hHHHHHHHHHHHHHCCCeEEe
Confidence 899999999999 9998 577655 223334567789999998874
No 249
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=95.95 E-value=0.016 Score=75.76 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=68.9
Q ss_pred EEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q psy15223 1604 LHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIE 1683 (2492)
Q Consensus 1604 i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~ 1683 (2492)
.+=-.|-|||.||+||+++.+..-.++| ...|.-++.+==+| +.. ...++++
T Consensus 6 rtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD-------------------~~R-------~~~~~~~ 57 (513)
T PRK14895 6 ITRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTD-------------------KER-------STKEAVE 57 (513)
T ss_pred eEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCC-------------------ccc-------cChHHHH
Confidence 4455799999999999999999999998 45676666553332 211 2345677
Q ss_pred HHHHHHHHhccccccc-CeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1684 QQKMDFMRLGILGEWD-NSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1684 ~~~~~~~~lGi~~Dw~-~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
.+.++|+-||+ ||| .+|+.++- ...-.....+|.++|.+|+-
T Consensus 58 ~i~~~L~WLGl--~wDe~py~QSeR--~~~Y~~~a~~Li~~G~AY~C 100 (513)
T PRK14895 58 AIFSGLKWLGL--DWNGEVIFQSKR--NNLYKEAALKLLQNGKAYYC 100 (513)
T ss_pred HHHHHHHHcCC--CCCCCceeEeCc--HHHHHHHHHHHHHcCCeEEe
Confidence 89999999999 888 56777652 23345567899999999864
No 250
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=95.90 E-value=0.018 Score=75.24 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=68.7
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHH
Q psy15223 455 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 534 (2492)
Q Consensus 455 ~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~ 534 (2492)
+==.|-|||.||+|||++-+..-.++| ...|.-++.+==+ ++.. ...++++.
T Consensus 7 tRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDT-------------------D~~R-------~~~~~~~~ 58 (513)
T PRK14895 7 TRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDT-------------------DKER-------STKEAVEA 58 (513)
T ss_pred EeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCC-------------------Cccc-------cChHHHHH
Confidence 445789999999999999999999999 3466666544322 2222 23457789
Q ss_pred HHHHHHHcccccccc-CeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 535 QKMDFMRLGILGEWD-NSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 535 ~~~~~~~lGi~~Dw~-~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.++|+-||+ ||| .+|+.++- -..-.....+|.++|.+|+-
T Consensus 59 i~~~L~WLGl--~wDe~py~QSeR--~~~Y~~~a~~Li~~G~AY~C 100 (513)
T PRK14895 59 IFSGLKWLGL--DWNGEVIFQSKR--NNLYKEAALKLLQNGKAYYC 100 (513)
T ss_pred HHHHHHHcCC--CCCCCceeEeCc--HHHHHHHHHHHHHcCCeEEe
Confidence 9999999999 898 57776662 23445678899999998873
No 251
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=95.85 E-value=0.0069 Score=77.84 Aligned_cols=90 Identities=18% Similarity=0.162 Sum_probs=65.9
Q ss_pred CCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15223 1608 PPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687 (2492)
Q Consensus 1608 pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~ 1687 (2492)
.|-|||.||+||+++-++.-.++|- ..|.-++.+==+| +.. ...++.+.+.+
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~--~gG~fiLRiEDTD-------------------~~R-------~~~e~~~~I~~ 56 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFLIRIEDTD-------------------KER-------NIEGKDKEILE 56 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCC-------------------CCc-------CChHHHHHHHH
Confidence 6999999999999999999998875 3565555543332 211 23456678999
Q ss_pred HHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1688 ~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+|+-+|+ +||.+|+.++-- ..-.....+|.++|.+|.-
T Consensus 57 ~L~WlGl--~wDe~y~QSeR~--~~Y~~~a~~Li~~G~AY~C 94 (433)
T PRK12410 57 ILNLFGI--SWDKLVYQSENL--KFHRQMAEKLLSEKKAFAC 94 (433)
T ss_pred HHHHcCC--CCCCCeehhccH--HHHHHHHHHHHHcCCeeee
Confidence 9999999 888888777621 2334467889999998863
No 252
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=95.83 E-value=0.015 Score=76.63 Aligned_cols=92 Identities=21% Similarity=0.226 Sum_probs=65.4
Q ss_pred cCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Q psy15223 1606 DGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQ 1685 (2492)
Q Consensus 1606 ~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~ 1685 (2492)
==+|-|||.||+||+++.++.-.++|- ..|.-++.+== .++.. ...++++.+
T Consensus 5 RfAPsPtG~lHiG~~rtal~n~l~Ar~--~~G~~iLRieD-------------------tD~~R-------~~~~~~~~i 56 (470)
T TIGR00464 5 RFAPSPTGYLHIGGARTALFNYLFAKH--TGGEFILRIED-------------------TDLER-------NIEEAEEAI 56 (470)
T ss_pred eeCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCc-------------------CCCcc-------CChHHHHHH
Confidence 347999999999999999999999983 34554444322 22221 233467789
Q ss_pred HHHHHHhccccccc-CeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1686 KMDFMRLGILGEWD-NSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1686 ~~~~~~lGi~~Dw~-~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
.++|+.||+ +|| .+|+.++-. ..-.....+|.++|++|+-
T Consensus 57 ~~~L~wlGl--~~de~~~~QS~r~--~~y~~~~~~L~~~g~aY~C 97 (470)
T TIGR00464 57 LEGLKWLGI--SWDEGPYYQSQRL--DIYKKYAKELLEEGLAYRC 97 (470)
T ss_pred HHHHHHCCC--CCCCCeeehhCCH--HHHHHHHHHHHHcCCEEec
Confidence 999999999 888 677777621 2223556789999999863
No 253
>PRK12411 cytidine deaminase; Provisional
Probab=95.79 E-value=0.029 Score=60.68 Aligned_cols=79 Identities=24% Similarity=0.316 Sum_probs=56.3
Q ss_pred cccccccccc-CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc------CCC
Q psy15223 54 PHRAKLALIA-GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT------LEP 125 (2492)
Q Consensus 54 ~~~a~~~~~~-~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t------~EP 125 (2492)
.+.+..+..- .+.+|||++. +||+|+ +|.|-......++.|||.+||-+|..... ..+ ..+.+. .-|
T Consensus 11 ~~~~~~ay~pyS~~~VgAa~~t~~G~i~-~G~nvEn~s~~~s~CAE~~Ai~~av~~g~-~~i---~~i~v~~~~~~~~sP 85 (132)
T PRK12411 11 IEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGD-KEF---VAIAIVADTKRPVPP 85 (132)
T ss_pred HHHHHhcCCCccCCceEEEEEeCCCCEE-EEEEeecCCCCcCcCHHHHHHHHHHHCCC-Cce---EEEEEEeCCCCCcCC
Confidence 3334444432 4689999998 688877 99997776677899999999999876532 232 223332 369
Q ss_pred hHhHHHHHHHhC
Q psy15223 126 CAMCAGAIIHVR 137 (2492)
Q Consensus 126 C~mC~~ai~~~g 137 (2492)
|-+|-..|.+..
T Consensus 86 CG~CRQ~l~Ef~ 97 (132)
T PRK12411 86 CGACRQVMVELC 97 (132)
T ss_pred chhHHHHHHHhC
Confidence 999999999963
No 254
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=95.77 E-value=0.02 Score=75.60 Aligned_cols=91 Identities=20% Similarity=0.208 Sum_probs=65.8
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 457 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 536 (2492)
Q Consensus 457 gPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~ 536 (2492)
=+|-|||.||+||+++-++.-.++|-+ .|.-++.+= +.++.. ...++++.+.
T Consensus 6 fAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRie-------------------DtD~~R-------~~~~~~~~i~ 57 (470)
T TIGR00464 6 FAPSPTGYLHIGGARTALFNYLFAKHT--GGEFILRIE-------------------DTDLER-------NIEEAEEAIL 57 (470)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeC-------------------cCCCcc-------CChHHHHHHH
Confidence 479999999999999999999999943 455444332 233322 2334778899
Q ss_pred HHHHHcccccccc-CeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 537 MDFMRLGILGEWD-NSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 537 ~~~~~lGi~~Dw~-~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
++|+-||+ +|| .+|+.++- -..-.....+|.++|++|+-
T Consensus 58 ~~L~wlGl--~~de~~~~QS~r--~~~y~~~~~~L~~~g~aY~C 97 (470)
T TIGR00464 58 EGLKWLGI--SWDEGPYYQSQR--LDIYKKYAKELLEEGLAYRC 97 (470)
T ss_pred HHHHHCCC--CCCCCeeehhCC--HHHHHHHHHHHHHcCCEEec
Confidence 99999999 888 67877662 12223566889999998863
No 255
>PLN02859 glutamine-tRNA ligase
Probab=95.76 E-value=0.0082 Score=81.04 Aligned_cols=95 Identities=21% Similarity=0.188 Sum_probs=68.4
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+.+==||-|||.||||||.+-++-..++|.+ .|.-.+.+= +.+|+. -..+++
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~LRie-------------------DTdp~r-------~~~e~~ 316 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYLRFD-------------------DTNPEA-------EKKEYI 316 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEec-------------------CCCCCc-------cchHHH
Confidence 5567799999999999999999999999964 455444321 333433 234578
Q ss_pred HHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 533 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.+.++++-||+ +|+..|++.|.. +.. .+.-.+|.++|++|.-
T Consensus 317 ~~I~edL~WLG~--~~d~~~~qSd~f-~~~-Y~~A~~Li~~G~AY~C 359 (788)
T PLN02859 317 DHIEEIVEWMGW--EPFKITYTSDYF-QEL-YELAVELIRRGHAYVD 359 (788)
T ss_pred HHHHHHHHHcCC--CCCCcccccHhH-HHH-HHHHHHHHHcCCeEec
Confidence 899999999997 898888776532 211 1234569999999874
No 256
>PLN02627 glutamyl-tRNA synthetase
Probab=95.75 E-value=0.037 Score=72.59 Aligned_cols=94 Identities=20% Similarity=0.315 Sum_probs=67.4
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+.+==+|-|||.||+||+++-++.-.++| ...|.-++.+==+| ++. ...++.
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD-------------------~~R-------~~~e~~ 97 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTD-------------------LAR-------STKESE 97 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCC-------------------CCC-------CChHHH
Confidence 45566789999999999999999999998 45666666553333 211 234466
Q ss_pred HHHHHHHHHhcccccccC---------eeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1683 EQQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.+.++|+-||+ |||. +|+-++- -..-.....+|.++|.+|+
T Consensus 98 ~~I~~~L~WLGl--~wDegp~~gg~~gpy~QSeR--~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 98 EAVLRDLKWLGL--DWDEGPDVGGEYGPYRQSER--NAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred HHHHHHHHHcCC--CCCcCcccCCCCCCeeeecc--HHHHHHHHHHHHHcCCeee
Confidence 789999999999 8885 3555441 2233456678999999995
No 257
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=95.69 E-value=0.027 Score=69.16 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=65.9
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==+|-|||.||+||+++.++.-.++|-+ .|.=++.+== .++.. -..++.
T Consensus 6 v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRiED-------------------tD~~R-------~~~~~~ 57 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRIED-------------------IDPPR-------EVPGAA 57 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEECc-------------------CCCCc-------cchHHH
Confidence 3445689999999999999999999988754 3544443321 22211 123456
Q ss_pred HHHHHHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1683 EQQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.+.++|+.||+ +||. +|+.++ +...-.....+|.++|++|.
T Consensus 58 ~~I~~dL~wlGl--~wDe~~~~QS~--r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 58 DAILADLEWLGL--HWDGPVLYQSQ--RHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred HHHHHHHHHCCC--CCCCCceEeec--cHHHHHHHHHHHHHCCCcee
Confidence 789999999999 8884 666655 23344556788999999875
No 258
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=95.69 E-value=0.033 Score=65.87 Aligned_cols=88 Identities=26% Similarity=0.348 Sum_probs=62.0
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q psy15223 1605 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 1684 (2492)
Q Consensus 1605 ~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~ 1684 (2492)
+==+|-|||.||+||+++.++.-.++|-+ .|.-++.+==+| +.. -..++.+.
T Consensus 4 ~RFAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLRieDtD-------------------~~R-------~~~~~~~~ 55 (230)
T cd00418 4 TRFAPSPTGYLHIGHARTALFNFAFARKY--GGKFILRIEDTD-------------------PER-------SRPEYVES 55 (230)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEEeCcCC-------------------CCC-------CChHHHHH
Confidence 33479999999999999999999999864 555555442222 211 12346678
Q ss_pred HHHHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCC
Q psy15223 1685 QKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKG 1724 (2492)
Q Consensus 1685 ~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kG 1724 (2492)
+.++++.||+ +||. +|+.++ +...-+....+|.++|
T Consensus 56 I~~dL~wlGl--~wd~~~~~QS~--r~~~y~~~~~~L~~~g 92 (230)
T cd00418 56 ILEDLKWLGL--DWDEGPYRQSD--RFDLYRAYAEELIKKG 92 (230)
T ss_pred HHHHHHHcCC--CCCCCeeehhc--CHHHHHHHHHHHHHcC
Confidence 9999999999 8887 776665 2222344677889999
No 259
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=95.56 E-value=0.018 Score=78.95 Aligned_cols=97 Identities=28% Similarity=0.326 Sum_probs=69.6
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q psy15223 1602 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 1681 (2492)
Q Consensus 1602 f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~ 1681 (2492)
-+++==||.|||.||+|||++.++...++|-+ .|.-++.+ |. .+|+. -..++
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~~~--~G~~~LR~---eD----------------Td~~r-------~~~e~ 82 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIARDY--GGRCHLRM---DD----------------TNPET-------EDTEY 82 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe---CC----------------CCCCc-------CChHH
Confidence 37788899999999999999999999999743 45443332 32 23322 22356
Q ss_pred HHHHHHHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCCceEEeC
Q psy15223 1682 IEQQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHGL 1730 (2492)
Q Consensus 1682 i~~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kGliyr~~ 1730 (2492)
++.+.++++-||+ +|+. +|+++| |-..-.....+|.++|++|...
T Consensus 83 ~~~I~~dl~wLG~--~wd~~~~~qS~--~~~~y~~~a~~Li~~G~aY~c~ 128 (771)
T PRK14703 83 VEAIKDDVRWLGF--DWGEHLYYASD--YFERMYAYAEQLIKMGLAYVDS 128 (771)
T ss_pred HHHHHHHHHHcCC--CCCCCceEeec--CHHHHHHHHHHHHHcCCcccCc
Confidence 7899999999999 7875 477765 2333345567899999999754
No 260
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=95.55 E-value=0.022 Score=67.26 Aligned_cols=86 Identities=26% Similarity=0.345 Sum_probs=62.2
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 457 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 536 (2492)
Q Consensus 457 gPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~ 536 (2492)
=+|-|||.||+||+++-++.-.++|-+ .|.-++.+== .++.. -..++.+.+.
T Consensus 6 FAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLRieD-------------------tD~~R-------~~~~~~~~I~ 57 (230)
T cd00418 6 FAPSPTGYLHIGHARTALFNFAFARKY--GGKFILRIED-------------------TDPER-------SRPEYVESIL 57 (230)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEEeCc-------------------CCCCC-------CChHHHHHHH
Confidence 479999999999999999999999864 5655554322 22322 2234778999
Q ss_pred HHHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcC
Q psy15223 537 MDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKG 574 (2492)
Q Consensus 537 ~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kG 574 (2492)
++++.||+ +||. +|+..+ +-..-.....+|.++|
T Consensus 58 ~dL~wlGl--~wd~~~~~QS~--r~~~y~~~~~~L~~~g 92 (230)
T cd00418 58 EDLKWLGL--DWDEGPYRQSD--RFDLYRAYAEELIKKG 92 (230)
T ss_pred HHHHHcCC--CCCCCeeehhc--CHHHHHHHHHHHHHcC
Confidence 99999999 8887 777655 2223335678899999
No 261
>PRK05578 cytidine deaminase; Validated
Probab=95.46 E-value=0.056 Score=58.43 Aligned_cols=69 Identities=26% Similarity=0.351 Sum_probs=52.0
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEE------cCCChHhHHHHHHHh
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV------TLEPCAMCAGAIIHV 136 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~------t~EPC~mC~~ai~~~ 136 (2492)
.+.+|||++. +||+|. +|.|-......++.|||.+||-+|...... .+. .+.+ ..-||-||-..|.+.
T Consensus 22 S~f~Vgaa~~~~~G~i~-~G~nvEna~~~~~~CAE~~Ai~~av~~G~~-~i~---~i~vv~~~~~~~sPCG~CRQ~l~e~ 96 (131)
T PRK05578 22 SKFPVGAALLTDDGRIY-TGCNIENASYGLTNCAERTAIFKAISEGGG-RLV---AIACVGETGEPLSPCGRCRQVLAEF 96 (131)
T ss_pred CCCceEEEEEeCCCCEE-EEEEeeCccccCCcCHHHHHHHHHHHcCCC-ceE---EEEEEecCCCccCccHHHHHHHHHh
Confidence 3678999998 578866 899977666678999999999998765432 321 2333 257999999999977
Q ss_pred C
Q psy15223 137 R 137 (2492)
Q Consensus 137 g 137 (2492)
.
T Consensus 97 ~ 97 (131)
T PRK05578 97 G 97 (131)
T ss_pred C
Confidence 4
No 262
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=95.32 E-value=0.21 Score=56.26 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=89.9
Q ss_pred ccChhHHHHHHhccCCCCcccccHHHHHH--------HHHHHHHHHHHHHHHHhcCCCCCCCccccccc-ccchHHHHHH
Q psy15223 2185 LFGAEILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNINIIKIS-DMVEIDKYAI 2255 (2492)
Q Consensus 2185 ~yGaD~lR~~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~il 2255 (2492)
+.|.|++||.+++.+..++++|+++.+.. ....+.|+.|.++..... .... ...... -..+.++.++
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~---~~~~-~~~~~~ll~~~~E~~L~ 77 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGET---IEAE-ADADLSLLPEPDERDLI 77 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCc---Cccc-cccchhhcCCHHHHHHH
Confidence 56899999999999999999999988543 345677888887754210 0000 001111 1234577888
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhcccc-CChHHHHHHHHHHHHHHHHHHHHH
Q psy15223 2256 INITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTK-KNSHARRSAQTSIWHINQSLLRLI 2329 (2492)
Q Consensus 2256 ~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~-~~~~~r~~~~~~l~~il~~l~~lL 2329 (2492)
..+..+.+.+..++++.+++.++..+.++. ..+++|| +.+ +...+. +-...|......+..++...+.+|
T Consensus 78 ~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~ff-d~v--~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~ll 148 (156)
T cd07956 78 LLLAKFPEVVKNAAETLEPHTIATYLFDLA-HAFSKFY-NAC--PVLGAEEELRNARLALVAAARQVLANGLDLL 148 (156)
T ss_pred HHHHHhHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHHH-hcC--cccCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999999999998 4666666 322 222211 112234445555556666666665
No 263
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=95.17 E-value=0.013 Score=80.24 Aligned_cols=95 Identities=28% Similarity=0.371 Sum_probs=69.2
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+++==||.|||.||+|||.+-++...++|-+ .|.-.+.+ | +.+|+. -..+++
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~~~--~G~~~LR~---e----------------DTd~~r-------~~~e~~ 83 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARDY--GGRCHLRM---D----------------DTNPET-------EDTEYV 83 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe---C----------------CCCCCc-------CChHHH
Confidence 6778899999999999999999999999843 45433332 2 333433 224578
Q ss_pred HHHHHHHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 533 EQQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.+.++++-||+ +|+. +|++.| |-..-.....+|.++|++|..
T Consensus 84 ~~I~~dl~wLG~--~wd~~~~~qS~--~~~~y~~~a~~Li~~G~aY~c 127 (771)
T PRK14703 84 EAIKDDVRWLGF--DWGEHLYYASD--YFERMYAYAEQLIKMGLAYVD 127 (771)
T ss_pred HHHHHHHHHcCC--CCCCCceEeec--CHHHHHHHHHHHHHcCCcccC
Confidence 899999999999 8875 477655 233344567789999998863
No 264
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.06 E-value=0.062 Score=64.15 Aligned_cols=88 Identities=18% Similarity=0.236 Sum_probs=58.9
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q psy15223 1605 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 1684 (2492)
Q Consensus 1605 ~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~ 1684 (2492)
+==+|-|||.||+||+++-++.-.++|- ..|.-++.+ |.+ ++.. -..++.+.
T Consensus 4 ~RfAPsPtG~LHlG~~~~al~n~l~ar~--~~G~~ilRi---eDt----------------d~~r-------~~~~~~~~ 55 (239)
T cd00808 4 TRFAPSPTGFLHIGGARTALFNYLFARK--HGGKFILRI---EDT----------------DQER-------SVPEAEEA 55 (239)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEEE---CcC----------------CCCC-------CchHHHHH
Confidence 3457999999999999999999999884 355333333 331 1100 11235667
Q ss_pred HHHHHHHhcccccccC---------eeccCChHHHHHHHHHHHHHHhCC
Q psy15223 1685 QKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKG 1724 (2492)
Q Consensus 1685 ~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~F~~L~~kG 1724 (2492)
+.++++.||+ |||. +|..++ ....-.....+|.++|
T Consensus 56 i~~dL~wlGl--~~d~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g 100 (239)
T cd00808 56 ILEALKWLGL--DWDEGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG 100 (239)
T ss_pred HHHHHHHcCC--CCCcCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence 8889999999 9988 777776 2222334467778888
No 265
>PRK08298 cytidine deaminase; Validated
Probab=94.93 E-value=0.028 Score=60.88 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=50.3
Q ss_pred ceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEE-c--------CCChHhHHHHHHHh
Q psy15223 67 PVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV-T--------LEPCAMCAGAIIHV 136 (2492)
Q Consensus 67 pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~-t--------~EPC~mC~~ai~~~ 136 (2492)
+|||+|. +||+|+ +|.|-.+.+...+..||.+||-+|...... .. ...+.+ . .-||-+|-..|.+.
T Consensus 24 ~VgAAllt~dG~i~-tG~NvEnas~~~t~CAEr~Ai~~av~~G~~-~~--~~i~v~~~~~~~~~~~~sPCG~CRQvl~Ef 99 (136)
T PRK08298 24 GGAAAMRVEDGTIL-TSVAPEVINASTELCMETGAICEAHKLQKR-VT--HSICVARENEHSELKVLSPCGVCQERLFYW 99 (136)
T ss_pred ceeEEEEeCCCCEE-EEEeecCCCCCcchhHHHHHHHHHHHCCCc-eE--EEEEEEcCCCcCCCcccCCChhHHHHHHHh
Confidence 8999998 688877 999976665567889999999988765422 22 122222 1 35999999999998
Q ss_pred CCc
Q psy15223 137 RLG 139 (2492)
Q Consensus 137 gi~ 139 (2492)
+-.
T Consensus 100 ~~~ 102 (136)
T PRK08298 100 GPD 102 (136)
T ss_pred CCC
Confidence 643
No 266
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=94.82 E-value=0.055 Score=65.40 Aligned_cols=84 Identities=21% Similarity=0.243 Sum_probs=58.9
Q ss_pred CCCCcccccccccc-cCCcceeeeee-eCCEEEEEEEcCC--ccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCC
Q psy15223 49 YLSPIPHRAKLALI-AGEVPVGAVLV-KNNLVISYGYNQQ--ITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLE 124 (2492)
Q Consensus 49 ~M~~a~~~a~~~~~-~~~~pvGaviv-~~~~ii~~g~n~~--~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~E 124 (2492)
.+..+......|.. -.+.+|||++. +||+|. .|.|-. ......+.|||.+||-+|...... .+ ..+.++..
T Consensus 25 L~~~a~~a~~~AyaPYS~F~VGAall~~~G~iy-~GvNvE~~nas~~~tiCAEr~Ai~~Av~~Ge~-~i---~~Iav~~~ 99 (283)
T TIGR01355 25 LPKLIPKAASYARAPISKFNVGAVGRGSSGRFY-LGVNVEFPGLPLHHSIHAEQFLISHLALNNER-GL---NDLAVSYA 99 (283)
T ss_pred HHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeccCCCCCCccccHHHHHHHHHHHcCCC-ce---EEEEEEeC
Confidence 34344433344422 34899999998 688866 899965 333455889999999998766432 32 35677788
Q ss_pred ChHhHHHHHHHhC
Q psy15223 125 PCAMCAGAIIHVR 137 (2492)
Q Consensus 125 PC~mC~~ai~~~g 137 (2492)
||-+|-..|.+..
T Consensus 100 PCG~CRQ~l~Ef~ 112 (283)
T TIGR01355 100 PCGHCRQFLNEIR 112 (283)
T ss_pred CcchhHHHHHHhc
Confidence 9999999999873
No 267
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=94.75 E-value=0.27 Score=55.40 Aligned_cols=138 Identities=14% Similarity=0.116 Sum_probs=91.1
Q ss_pred hcChhhHHHHhhccCcccccccCHHHHHHH--------HHHHHHHHHHHHHHhhcCCCCCCCccccccccc-chHHHHHH
Q psy15223 1035 LFGAEILRLWVASTDYSKDLSISNEILNRV--------VETYRRIRNTLRFLLANTSDFNPNINIIKISDM-VEIDKYAI 1105 (2492)
Q Consensus 1035 ~yGaD~lRl~l~s~~~~~d~~fs~~~l~~~--------~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~-~~~D~~il 1105 (2492)
..|.|++||.+++.+..+++.|+.+.+... ...+.|+.|.++-..... ... ..+....+ .+.++-++
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~---~~~-~~~~~~ll~~~~E~~L~ 77 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETI---EAE-ADADLSLLPEPDERDLI 77 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcC---ccc-cccchhhcCCHHHHHHH
Confidence 568899999999999999999999875322 246778888887643100 000 01111111 34566778
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhcccc-CChHHHHHHHHHHHHHHHHHHHHhc
Q psy15223 1106 INITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTK-KNSHARRSAQTSIWHINQSLLRLIS 1180 (2492)
Q Consensus 1106 ~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~-~~~~~r~sa~~~L~~il~~l~~lLa 1180 (2492)
..+..+.+.+..++++.+++.++..+.++. ..+++|| +.+ +.-.+. +-...|......+..++...+.+|.
T Consensus 78 ~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~ff-d~v--~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llg 149 (156)
T cd07956 78 LLLAKFPEVVKNAAETLEPHTIATYLFDLA-HAFSKFY-NAC--PVLGAEEELRNARLALVAAARQVLANGLDLLG 149 (156)
T ss_pred HHHHHhHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHHH-hcC--cccCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999999999998 5677766 322 221111 1123455666666666777666663
No 268
>KOG0833|consensus
Probab=94.71 E-value=0.056 Score=59.31 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=57.2
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc------CCChHhHHHHHHHh
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT------LEPCAMCAGAIIHV 136 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t------~EPC~mC~~ai~~~ 136 (2492)
.+.+|||++. ++|+|. .|.|-....-+++.|||..||.++.-+.-. .+. +-..++ ..||.-|..-|...
T Consensus 40 S~fkVGA~~r~ssGrif-~G~NVEn~~~~~sIcAEr~ai~~l~l~g~~-k~~--~~aV~~~~~~~f~tPCG~CRQfl~Ef 115 (173)
T KOG0833|consen 40 SKFKVGAAGRASSGRIF-LGVNVENASYHHSICAERFAIANLALNGER-KFR--AIAVVAYEDGDFTTPCGVCRQFLREF 115 (173)
T ss_pred cCCceEEEEEecCCcEE-EeeeecccCCCCcccHHHHHHHHHHHcCcc-cce--EEEEEecCCCCcCCCcHHHHHHHHHH
Confidence 3789999999 678866 899988888889999999999999876433 332 223343 68999999999998
Q ss_pred CCc
Q psy15223 137 RLG 139 (2492)
Q Consensus 137 gi~ 139 (2492)
+-.
T Consensus 116 ~~~ 118 (173)
T KOG0833|consen 116 GNA 118 (173)
T ss_pred hhc
Confidence 876
No 269
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.58 E-value=0.1 Score=62.29 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=58.5
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 457 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 536 (2492)
Q Consensus 457 gPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~ 536 (2492)
=+|-|||.||+||+++-++.-.++|- ..|.-.+.+==+| +.. --.++.+.+.
T Consensus 6 fAPsPtG~LHlG~~~~al~n~l~ar~--~~G~~ilRieDtd-------------------~~r-------~~~~~~~~i~ 57 (239)
T cd00808 6 FAPSPTGFLHIGGARTALFNYLFARK--HGGKFILRIEDTD-------------------QER-------SVPEAEEAIL 57 (239)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEEECcCC-------------------CCC-------CchHHHHHHH
Confidence 47999999999999999999999984 3453333332222 111 1123667888
Q ss_pred HHHHHccccccccC---------eeecCChHHHHHHHHHHHHHHHcC
Q psy15223 537 MDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKG 574 (2492)
Q Consensus 537 ~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~f~~l~~kG 574 (2492)
+++..||+ |||. +|...+ ....-.....+|.++|
T Consensus 58 ~dL~wlGl--~~d~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g 100 (239)
T cd00808 58 EALKWLGL--DWDEGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG 100 (239)
T ss_pred HHHHHcCC--CCCcCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence 99999999 9998 777766 1222234467778888
No 270
>PLN02402 cytidine deaminase
Probab=94.45 E-value=0.073 Score=64.58 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=52.9
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCCC--CCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhC
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRNDP--TAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVR 137 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~~--~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~g 137 (2492)
.+.+|||++. ++|+|. .|.|-...+... +.|||..||-+|...... .+ -.+.++..||-||-..|.+..
T Consensus 44 S~F~VGAa~l~~~G~i~-~GvNVEnasy~l~~tiCAEr~Ai~~av~~G~~-~i---~~iaV~~sPCG~CRQ~l~Ef~ 115 (303)
T PLN02402 44 SKYHVGAVGLGSSGRIF-LGVNLEFPGLPLHHSVHAEQFLITNLTLNAEP-HL---KYVAVSAAPCGHCRQFFQEIR 115 (303)
T ss_pred CCCeeeEEEEeCCCCEE-EEEeeecCCCCCCCcccHHHHHHHHHHHcCCC-ce---EEEEEEeCCCcccHHHHHHhc
Confidence 3789999998 678865 899976554433 889999999998766432 33 346777889999999999873
No 271
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=93.87 E-value=0.089 Score=68.29 Aligned_cols=73 Identities=25% Similarity=0.165 Sum_probs=46.4
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s 1047 (2492)
+.+|+.+.|.||.. ++....=.+.-+....+| .++.-++.+.+|+|||||.||.|+.+|- ..+++.++=++.+
T Consensus 187 ~~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d~--~tsp~~i~qki~~ 259 (408)
T PRK05912 187 YGCDLQLGGSDQWG-NILSGRDLQRRYGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDEE--KTSPYEMYQKWMN 259 (408)
T ss_pred CCCCEEeccHHHHH-HHHHHHHHHHHhCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCCC--CCCHHHHHHHHhc
Confidence 57999999999983 333222122222333333 2456667788999999999999998762 2345555555554
No 272
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=93.77 E-value=0.15 Score=62.62 Aligned_cols=58 Identities=22% Similarity=0.058 Sum_probs=38.0
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKP 1029 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p 1029 (2492)
+.+|+...|.||-. ++....=.+.-+.+ .+-...+++-++.+.+|.|||||.||.++.
T Consensus 152 ~~~~~vp~G~DQ~~-~i~l~rdla~r~n~-~~~p~~l~~p~l~~l~G~KMSKS~~~~i~l 209 (273)
T cd00395 152 EGCDIQPGGSDQWG-NITLGRELARRFNG-FTIAEGLTIPLVTKLDGPKFGKSESGPKWL 209 (273)
T ss_pred cCCcEEEecHHHHH-HHHHHHHHHHHhCC-CCCCeEEeeccccCCCCCcCCCCCCCCccc
Confidence 45799999999983 33332222222222 122344566888999999999999999753
No 273
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=93.74 E-value=0.052 Score=70.25 Aligned_cols=59 Identities=25% Similarity=0.169 Sum_probs=40.9
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ 1031 (2492)
+.+|+.+.|.||.. ++....=.+.-+....| -.+++.++.+.+|.|||||.||.|+.+|
T Consensus 185 ~~~~iq~gG~DQ~~-ni~~grdl~~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d 243 (410)
T PRK13354 185 EDVDLQIGGTDQWG-NILMGRDLQRKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDP 243 (410)
T ss_pred CCCCEEEecHHHHH-HHHHHHHHHHHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccC
Confidence 47899999999983 32222222222333434 4556777788999999999999998765
No 274
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=93.54 E-value=0.13 Score=66.92 Aligned_cols=73 Identities=25% Similarity=0.165 Sum_probs=47.1
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+.+|+.++|.||.. ++....=.+.-+....+| .++..++.+.+|+|||||.||.|+..+- +.+++.++=++.+
T Consensus 187 ~~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d~--~tsp~~i~qki~~ 259 (408)
T PRK05912 187 YGCDLQLGGSDQWG-NILSGRDLQRRYGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDEE--KTSPYEMYQKWMN 259 (408)
T ss_pred CCCCEEeccHHHHH-HHHHHHHHHHHhCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCCC--CCCHHHHHHHHhc
Confidence 67999999999984 322211111112233333 3456677788999999999999998762 3456666666654
No 275
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=93.18 E-value=0.069 Score=69.16 Aligned_cols=72 Identities=21% Similarity=0.079 Sum_probs=46.3
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
+.+|+.++|.||.. ++....=.+.-+....| -.+++.++.+.+|.|||||.||.|+..+= +.+++.++=++.
T Consensus 185 ~~~~iq~gG~DQ~~-ni~~grdl~~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d~--~tsp~~i~qki~ 256 (410)
T PRK13354 185 EDVDLQIGGTDQWG-NILMGRDLQRKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDPE--KTSPYEFYQFWM 256 (410)
T ss_pred CCCCEEEecHHHHH-HHHHHHHHHHHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccCC--CCCHHHHHHHHH
Confidence 47899999999984 22221111222333334 45677788889999999999999987653 334555554444
No 276
>PRK09027 cytidine deaminase; Provisional
Probab=93.08 E-value=0.21 Score=60.94 Aligned_cols=69 Identities=23% Similarity=0.279 Sum_probs=53.0
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCcc--CCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhC
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQIT--RNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVR 137 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~--~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~g 137 (2492)
.+.+|||++. ++|+|. .|.|-... .-..+.|||..||-+|..... ..+ ..+.++.-||-+|-.-|.+..
T Consensus 69 S~F~VGAa~~~~sG~iy-~GvNvE~~~~s~~~tiCAEr~Ai~~a~~~Ge-~~i---~~I~v~~sPCG~CRQ~l~E~~ 140 (295)
T PRK09027 69 SHFNVGAIARGVSGNFY-FGANMEFAGAALQQTVHAEQSAISHAWLRGE-KAI---ADITVNYTPCGHCRQFMNELN 140 (295)
T ss_pred CCCcEEEEEEeCCCCEE-EEEeeccCCCCCCCCcCHHHHHHHHHHHCCC-Cce---EEEEEEecCchhhHHHHHHhC
Confidence 4789999998 678866 89996543 235689999999999876543 233 456677889999999998863
No 277
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.85 E-value=0.14 Score=63.00 Aligned_cols=72 Identities=19% Similarity=0.075 Sum_probs=44.6
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+.+|+..+|.||.. ++ .+..-++ +.+ .+-...+++.++.+.+|.|||||.||.++...+.+ +++.++=.+.+
T Consensus 152 ~~~~~vp~G~DQ~~-~i--~l~rdla~r~n~-~~~p~~l~~p~l~~l~G~KMSKS~~~~i~l~~~~d--sp~~i~~ki~~ 225 (273)
T cd00395 152 EGCDIQPGGSDQWG-NI--TLGRELARRFNG-FTIAEGLTIPLVTKLDGPKFGKSESGPKWLDTEKT--SPYEFYQFWIN 225 (273)
T ss_pred cCCcEEEecHHHHH-HH--HHHHHHHHHhCC-CCCCeEEeeccccCCCCCcCCCCCCCCccccccCC--CHHHHHHHHHc
Confidence 56799999999984 22 2222222 221 12234556688899999999999999986543322 24444444443
No 278
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=92.59 E-value=0.1 Score=65.44 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=47.0
Q ss_pred CHHHHHHHHHcCcEEEeccccccc---------ccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFK---------NSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
+.+.+++++++|+||||+|..++. +.+.+++++...|+++++++||.|++.+.
T Consensus 190 ~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~~~~ 251 (293)
T cd00530 190 DPDYLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRKSYL 251 (293)
T ss_pred CHHHHHHHHhCCCEEEeCCCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCchhhh
Confidence 358899999999999999988875 56779999999999999999999998653
No 279
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=92.47 E-value=0.11 Score=65.99 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=58.0
Q ss_pred ccCCccchhHHHHHhccCeEEeCCCCcCCCcccce---EeeeecccCCCceEEEccccHHHHHHHHHHHHhc-------c
Q psy15223 1337 LFEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSI---INLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK-------R 1406 (2492)
Q Consensus 1337 v~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~---~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~-------r 1406 (2492)
..+||.-|+-+|+-++|+|||+++ +++..|-|.. .+.+. ++.++| .|++++||..+.+.|++. .
T Consensus 51 s~~p~~~cad~ii~~gi~rVVi~~-D~d~~G~~~~~~~~~~L~----~aGi~V-~~~l~~e~~~l~~~~~~~ie~~~~~~ 124 (360)
T PRK14719 51 SNTPVFQIADDLIAENISEVILLT-DFDRAGRVYAKNIMEEFQ----SRGIKV-NNLIRKEIIKYSRGDLKDIESLYPYI 124 (360)
T ss_pred eCCchHHHHHHHHHcCCCEEEEEE-CCCCCCCccchHHHHHHH----HCCCEE-EeehHHHHHHHhHHhhhcchhhhhhh
Confidence 358888899999999999999999 5444222211 33322 245688 579999999998876654 2
Q ss_pred -------------ccceeEEEEecCCCchH
Q psy15223 1407 -------------RNFVKNKIQALPENRKF 1423 (2492)
Q Consensus 1407 -------------r~~~~~l~~a~~k~~~~ 1423 (2492)
..|.+++-+|+.=..++
T Consensus 125 ~~~~~~~~~~~~~~rP~V~lK~A~SLDGkI 154 (360)
T PRK14719 125 SRRININSDLSDIMLPYVISNVGMTLDGKL 154 (360)
T ss_pred eeccccccccccCCCCeEEEEEEEcCcCcc
Confidence 37778888887766544
No 280
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=91.97 E-value=0.3 Score=61.69 Aligned_cols=60 Identities=33% Similarity=0.382 Sum_probs=36.7
Q ss_pred CcCeeeeecccccchhhHHHHHHHHHHhcCC------CCceEEEEeeE---EEcCCCccccccCCC-ccCcch
Q psy15223 969 IFPADLYLEGSDQHRGWFHSSLLTSIILNKS------APYKALLTHGF---VVDSKGKKMSKSKGN-IIKPQK 1031 (2492)
Q Consensus 969 ~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~------~p~k~v~~hG~---vld~~G~KMSKS~GN-~i~p~~ 1031 (2492)
.+-+|+...|.||.. |-+|..-++-.-+ .+-...+.|.+ +.+.+|+|||||.+| .|...|
T Consensus 137 ~~~~d~vpvG~DQ~~---h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 137 LYQADLVPVGIDQDQ---HLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred hcCCCeeecccccHH---HHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 345889999999984 3344333332211 12234555555 445567899999997 776544
No 281
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=91.86 E-value=0.14 Score=62.91 Aligned_cols=68 Identities=31% Similarity=0.272 Sum_probs=44.3
Q ss_pred ceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+|+.+.|.||.. ++ ++..-++ +.... .-.+.|.++.+.+|+|||||.+|.++ ..+. -+++.++=.+..
T Consensus 152 ~~l~~~G~DQ~~-~i--~~~rd~a~r~~~~~--~~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~--dsp~~i~~Ki~~ 221 (269)
T cd00805 152 VDLQLGGSDQRG-NI--TLGRDLIRKLGYKK--VVGLTTPLLTGLDGGKMSKSEGNAIW-DPVL--DSPYDVYQKIRN 221 (269)
T ss_pred CCeeEecHHHHH-HH--HHHHHHHHHhCCCC--cEEEeeccccCCCCCcccCCCCCccc-ccCC--CCHHHHHHHHHc
Confidence 489999999984 22 2222222 22223 34578899999999999999999986 3332 346666555554
No 282
>PLN02182 cytidine deaminase
Probab=91.77 E-value=0.51 Score=58.09 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=51.1
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCC--CCCcHHHHHHHHHHHhccCcccCCCeEEEEc------CCChHhHHHHHH
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRND--PTAHAEIIALRMASKLLNNYRFSKNYKIYVT------LEPCAMCAGAII 134 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~--~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t------~EPC~mC~~ai~ 134 (2492)
.+.+|||++. .+|+|. .|.|-...+.. .+.|||..||-+|...... .+. ...+.++ .-||-+|-.-|.
T Consensus 64 S~F~VGAa~l~~sG~iy-~GvNVEnas~pl~~tICAEr~AI~~A~~~Ge~-~i~-~iaVaV~~~~~~~~sPCG~CRQfm~ 140 (339)
T PLN02182 64 SKYKVGAVGRASSGRVY-LGVNVDFPGLPLHHSIHAEQFLVTNLALNSEK-DLC-ELAVAISTDGKEFGTPCGHCLQFLM 140 (339)
T ss_pred cCCeeeEEEEeCCCCEE-EEEEeecCCCccCCccCHHHHHHHHHHHCCCC-ceE-EEEEEEecCCCCCcCCCchhHHHHH
Confidence 3789999998 688866 89997665433 3899999999999766432 221 1122222 579999999999
Q ss_pred HhC
Q psy15223 135 HVR 137 (2492)
Q Consensus 135 ~~g 137 (2492)
+..
T Consensus 141 Ef~ 143 (339)
T PLN02182 141 EMS 143 (339)
T ss_pred HhC
Confidence 874
No 283
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=91.74 E-value=0.36 Score=61.01 Aligned_cols=80 Identities=28% Similarity=0.285 Sum_probs=46.1
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCC------ccccEEEEeee---EEcCCCceeeeccCC-ccCcchhhhccChh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKS------APYKALLTHGF---VVDSKGKKMSKSKGN-IIKPQKLCNLFGAE 2189 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~------~pfk~v~~hG~---vld~~G~KMSKS~GN-vi~p~~ii~~yGaD 2189 (2492)
|-+|+...|.||.. |-+|...++-.-. .+-+..+.|.+ +.+.+|+|||||.+| .|...| .+|
T Consensus 138 ~~~d~vpvG~DQ~~---h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D-----~~e 209 (328)
T TIGR00233 138 YQADLVPVGIDQDQ---HLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD-----TPK 209 (328)
T ss_pred cCCCeeecccccHH---HHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecC-----CHH
Confidence 45789999999985 4444443332111 12234455555 445567899999997 776654 455
Q ss_pred HHHHHHhc--cCCCCccccc
Q psy15223 2190 ILRLWVAS--TDYSKDLSIS 2207 (2492)
Q Consensus 2190 ~lR~~l~s--~~~~~d~~fs 2207 (2492)
.++=-+.+ .+....+.++
T Consensus 210 ~I~~KI~~a~td~~~~~~~~ 229 (328)
T TIGR00233 210 QIKKKIRKAATDGGRVTLFE 229 (328)
T ss_pred HHHHHHHhcCCCCCCCcccC
Confidence 56555543 3333344443
No 284
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=91.48 E-value=0.18 Score=62.11 Aligned_cols=54 Identities=35% Similarity=0.254 Sum_probs=37.2
Q ss_pred eeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccC
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIK 1028 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~ 1028 (2492)
+|+.+.|.||.. ++....=.+.-+... ..-.++|.++.+.+|+|||||.+|.++
T Consensus 152 ~~l~~~G~DQ~~-~i~~~rd~a~r~~~~--~~~~l~~~ll~~l~G~KMSKS~~~~~~ 205 (269)
T cd00805 152 VDLQLGGSDQRG-NITLGRDLIRKLGYK--KVVGLTTPLLTGLDGGKMSKSEGNAIW 205 (269)
T ss_pred CCeeEecHHHHH-HHHHHHHHHHHhCCC--CcEEEeeccccCCCCCcccCCCCCccc
Confidence 489999999983 322222112222222 345578999999999999999999985
No 285
>PRK09027 cytidine deaminase; Provisional
Probab=91.36 E-value=0.25 Score=60.33 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=61.3
Q ss_pred Ccccccccccc-cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCc-ccCCCeEEEEc----CC
Q psy15223 52 PIPHRAKLALI-AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNY-RFSKNYKIYVT----LE 124 (2492)
Q Consensus 52 ~a~~~a~~~~~-~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~-~l~~~~~ly~t----~E 124 (2492)
.|.+.+.+|.. -.+.+|||+|. +||+|. .|.|-.+...+|+..||..||..+...+... .+. ...|+.. ..
T Consensus 195 ~A~~aa~~SYaPYS~f~vGaAl~~~dG~i~-~G~nvENAAynpslcaer~Al~~~v~~G~~~~~i~-~i~lv~~~~~~is 272 (295)
T PRK09027 195 AALDAANRSHAPYSQSYSGVALETKDGRIY-TGRYAENAAFNPSLPPLQGALNLLNLSGEDFSDIQ-RAVLVEKADAKLS 272 (295)
T ss_pred HHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHcCCCccCEE-EEEEEeCCCCCcC
Confidence 33333444422 34789999998 678876 8999988889999999999999987654331 222 3444433 35
Q ss_pred ChHhHHHHHHHhCCceE
Q psy15223 125 PCAMCAGAIIHVRLGEI 141 (2492)
Q Consensus 125 PC~mC~~ai~~~gi~rv 141 (2492)
||.||...|...+-..+
T Consensus 273 pcg~cRq~L~ef~~~~~ 289 (295)
T PRK09027 273 QWDATQATLKALGCHEL 289 (295)
T ss_pred chHHHHHHHHHhCCCCc
Confidence 99999999987754443
No 286
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=90.72 E-value=0.23 Score=60.72 Aligned_cols=52 Identities=56% Similarity=1.011 Sum_probs=46.8
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSP 52 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~ 52 (2492)
+.+++++++++|+|+|+++..++.+.+.+++++...|.+|++.+||.||+.+
T Consensus 156 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~dril~~TD~p~~~~ 207 (252)
T TIGR00010 156 DAELAKKLLDLGFYISISGIVTFKNAKSLREVVRKIPLERLLVETDSPYLAP 207 (252)
T ss_pred CHHHHHHHHHCCCeEeeceeEecCCcHHHHHHHHhCCHHHeEecccCCCCCC
Confidence 3578999999999999999888877788999999999999999999999864
No 287
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=90.05 E-value=0.19 Score=62.85 Aligned_cols=62 Identities=31% Similarity=0.213 Sum_probs=39.5
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcC--CCCceEEEEeeEEEcCCCc-cccccCCC-ccCcchh
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNK--SAPYKALLTHGFVVDSKGK-KMSKSKGN-IIKPQKL 1032 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~--~~p~k~v~~hG~vld~~G~-KMSKS~GN-~i~p~~i 1032 (2492)
+-+|+.+.|.||.. ++....-.+.-+.. ..|-...+++.++.+.+|. |||||.+| .|++.|-
T Consensus 148 l~~~~~~~G~DQ~~-~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 148 LKADLVPGGIDQRG-HIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp TTHSEEEEEGGGHH-HHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred eccccccccchHHH-HHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEecc
Confidence 34679999999984 32222211222222 2344677788888889999 99999999 7766543
No 288
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=90.03 E-value=0.27 Score=62.32 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=41.1
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCc--eeeecc-CCccCcch
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK--KMSKSK-GNIIKPQK 2181 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~--KMSKS~-GNvi~p~~ 2181 (2492)
+.+|+...|.||.. |..+..-++-.-..+-...+.|.++.+.+|. |||||. ||.|...|
T Consensus 167 ~~ad~vpvG~DQ~~---h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D 228 (329)
T PRK08560 167 LDVDIAVGGMDQRK---IHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHD 228 (329)
T ss_pred hCCCEEEechhHHH---HHHHHHHhhHhcCCCCceEEEcCccCCCCCCCCCCcCCCCCCeecccC
Confidence 56899999999984 3344443332211112356678888888887 999999 99998765
No 289
>KOG1147|consensus
Probab=90.01 E-value=0.88 Score=57.83 Aligned_cols=99 Identities=21% Similarity=0.299 Sum_probs=68.2
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++-=||=|||.||||||-.-.+- -|... -|+=-.++-||.+- |++ -..++.
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLN----qYfa~-~~~G~LIvRFDDTN----------------PaK-------E~~eFe 252 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLN----QYFAQ-AYQGKLIVRFDDTN----------------PAK-------ENEEFE 252 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHH----HHHHH-hcCceEEEEecCCC----------------cch-------hhHHHH
Confidence 566779999999999999865542 33222 12223455566542 332 234566
Q ss_pred HHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCccc
Q psy15223 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPV 1733 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v 1733 (2492)
+.+.+++..|||-.| -.|..-+|-......=.+|.+.|-.|-+..|+
T Consensus 253 ~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 253 DVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred HHHHHHHHHhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence 788999999999553 35666677777888888999999999886654
No 290
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=89.78 E-value=1.9 Score=46.89 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=43.1
Q ss_pred CCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHH----HhCCceEEEecCC
Q psy15223 92 PTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAII----HVRLGEIIYGTPS 147 (2492)
Q Consensus 92 ~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~----~~gi~rvv~g~~~ 147 (2492)
...|||+.||.+|....... ....+|||.-.+|..|-+.|- .+|++.+.+-..+
T Consensus 79 ~~~HAE~~aiqqA~d~G~~~--g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~~ 136 (146)
T PF14437_consen 79 AKAHAEAGAIQQAYDAGKTV--GRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEPD 136 (146)
T ss_pred HHHHHHHHHHHHHHHhcCcc--CCeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEecC
Confidence 36899999999999985432 347899999999999987664 4799998776653
No 291
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=89.68 E-value=0.21 Score=62.58 Aligned_cols=63 Identities=30% Similarity=0.256 Sum_probs=38.8
Q ss_pred cCceeeecccchhhhh-HHHHHHHHHHhcCCccccEEEEeeeEEcCCCc-eeeeccCC-ccCcchh
Q psy15223 2120 FPADLYLEGSDQHRGW-FHSSLLTSIILNKSAPYKALLTHGFVVDSKGK-KMSKSKGN-IIKPQKL 2182 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~w-f~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~-KMSKS~GN-vi~p~~i 2182 (2492)
+-+|+.+.|.||.... +.+-++.........|-...+++.++.+.+|. |||||.+| .|++.|-
T Consensus 148 l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 148 LKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp TTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred eccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEecc
Confidence 3467999999998411 11111111111122344567888888889999 99999999 7766543
No 292
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=89.63 E-value=0.3 Score=61.90 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=41.6
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCc--cccccC-CCccCcchh
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK--KMSKSK-GNIIKPQKL 1032 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~--KMSKS~-GN~i~p~~i 1032 (2492)
+.+|+...|.||.. |-.+..-++-.-+.+-...++|.++.+.+|. |||||. ||.|...|=
T Consensus 167 ~~ad~vpvG~DQ~~---h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~ 229 (329)
T PRK08560 167 LDVDIAVGGMDQRK---IHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDS 229 (329)
T ss_pred hCCCEEEechhHHH---HHHHHHHhhHhcCCCCceEEEcCccCCCCCCCCCCcCCCCCCeecccCC
Confidence 56899999999984 3344443332222222455668888888887 999999 999986543
No 293
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=89.45 E-value=0.36 Score=62.12 Aligned_cols=57 Identities=28% Similarity=0.270 Sum_probs=37.8
Q ss_pred eeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcch
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQK 1031 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ 1031 (2492)
+|+.+.|.||. |++....-.+.-..+..+| .+++.++...+|.|||||.||.|+.++
T Consensus 178 ~di~~gG~DQ~-~ni~~g~dLar~~~~~~~~--~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 178 VDLQIGGSDQW-GNIRKGRDLIRRNLPSLGF--GLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred CCeeEecchhH-HHHHHHHHHHHHhcCCCce--eeceeeecCCCCCCccCCCCCcccCCc
Confidence 67999999997 3444433333333344333 255556667789999999999887653
No 294
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=88.58 E-value=0.33 Score=61.20 Aligned_cols=59 Identities=27% Similarity=0.315 Sum_probs=36.1
Q ss_pred CcCceeeecccchhhhhHHHHHHHHHHh-----cC-CccccEEE---EeeeEEcCCCceeeeccCCccCcc
Q psy15223 2119 IFPADLYLEGSDQHRGWFHSSLLTSIIL-----NK-SAPYKALL---THGFVVDSKGKKMSKSKGNIIKPQ 2180 (2492)
Q Consensus 2119 ~~P~Dl~~~G~D~~r~wf~~~l~~~~~l-----~~-~~pfk~v~---~hG~vld~~G~KMSKS~GNvi~p~ 2180 (2492)
.|.+|+...|.||.. |-.|..-++- .+ ..|....+ .+-++...+|+|||||.+|.|...
T Consensus 147 ~~~~d~VpvG~DQ~q---hleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg~KMSKS~~n~I~L~ 214 (332)
T PRK12556 147 LFQATHVPVGKDQIQ---HIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDGRKMSKSYGNVIPLF 214 (332)
T ss_pred hccCCEEEeccccHH---HHHHHHHHHHHHHHhccccCCCceeccccccccccCCCCCCCCCCCCCccccc
Confidence 356789999999984 2333222221 11 11222333 355666778999999999988543
No 295
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=88.55 E-value=0.43 Score=61.43 Aligned_cols=57 Identities=28% Similarity=0.270 Sum_probs=36.8
Q ss_pred ceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcch
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQK 2181 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ 2181 (2492)
+|+.++|.||. +++......+.-+....+| .++..++...+|.|||||.||.|+.++
T Consensus 178 ~di~~gG~DQ~-~ni~~g~dLar~~~~~~~~--~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 178 VDLQIGGSDQW-GNIRKGRDLIRRNLPSLGF--GLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred CCeeEecchhH-HHHHHHHHHHHHhcCCCce--eeceeeecCCCCCCccCCCCCcccCCc
Confidence 57999999997 3333333333223334333 355556666789999999999887653
No 296
>KOG1147|consensus
Probab=88.42 E-value=1.5 Score=55.85 Aligned_cols=99 Identities=21% Similarity=0.288 Sum_probs=67.5
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+++-=||=|||.||||||-.-.| +-|.... |+=-.+.-||.. .|++ --.++.
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALL----NqYfa~~-~~G~LIvRFDDT----------------NPaK-------E~~eFe 252 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALL----NQYFAQA-YQGKLIVRFDDT----------------NPAK-------ENEEFE 252 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHH----HHHHHHh-cCceEEEEecCC----------------Ccch-------hhHHHH
Confidence 45667999999999999986554 3332221 122234445543 3333 234577
Q ss_pred HHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCccc
Q psy15223 533 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPV 583 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv 583 (2492)
+.+.+++.-|||-.| -.|...+|-......=.+|.+.|-.|-+..|.
T Consensus 253 ~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 253 DVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred HHHHHHHHHhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence 889999999999553 45666677777888888999999999887664
No 297
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=88.42 E-value=0.23 Score=54.77 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=26.7
Q ss_pred hhhhhc-cCCccchhHHHHHhccCeEEeCCCCc
Q psy15223 1332 RCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSF 1363 (2492)
Q Consensus 1332 RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~ 1363 (2492)
.+..++ ..||.+|+..|+++||++|||+.+-+
T Consensus 97 ~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~ 129 (164)
T COG2131 97 GATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYP 129 (164)
T ss_pred CcEEEEEecccHHHHHHHHHhCceEEEeecCCC
Confidence 344444 59999999999999999999999844
No 298
>KOG1148|consensus
Probab=88.28 E-value=0.97 Score=58.08 Aligned_cols=95 Identities=23% Similarity=0.176 Sum_probs=56.0
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+.+-=||=|||.||||||-..-+-==+|+ .+.|..-+. +| +..|+. -..++.
T Consensus 249 V~TRFPPEPNG~LHIGHaKAInvNFgyAk--~~~G~cyLR---fD----------------DTNPEk-------Eee~yf 300 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKAINVNFGYAK--AHGGVCYLR---FD----------------DTNPEK-------EEEEYF 300 (764)
T ss_pred eEEeCCCCCCceeeecchhheeechhhhh--hhCCeEEEe---cC----------------CCCcch-------hhHHHH
Confidence 56678999999999999853211111111 122222111 22 334443 234556
Q ss_pred HHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+++...-||. +-.-.|.+-+|-...-..-..|.++|+.|--
T Consensus 301 ~sI~e~V~WLG~----~P~kvTysSDyFdqLy~~av~LIrkG~AYVc 343 (764)
T KOG1148|consen 301 ESIKEMVAWLGF----EPYKVTYSSDYFDQLYELAVELIRKGKAYVC 343 (764)
T ss_pred HHHHHHHHHhCC----CceeeecchhHHHHHHHHHHHHHhcCceeEE
Confidence 666666655665 6666788877766655666688999999853
No 299
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=88.20 E-value=0.23 Score=52.56 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=25.0
Q ss_pred cCCccchhHHHHHhccCeEEeCCCCcC
Q psy15223 1338 FEPCAMCAGAIIHVRLGEIIYGTPSFK 1364 (2492)
Q Consensus 1338 ~~~c~mC~~a~~~~~i~~vv~g~~~~~ 1364 (2492)
.+||.||+.+|.+.++++|+|...++.
T Consensus 77 ~sPC~~C~~~l~~~~~~~v~~~~~~~~ 103 (112)
T cd01283 77 WSPCGACRQVLAEFLPSRLYIIIDNPK 103 (112)
T ss_pred cCCCHHHHHHHHHhCCCCeEEEEEcCC
Confidence 599999999999999999999998764
No 300
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=88.11 E-value=0.38 Score=60.66 Aligned_cols=58 Identities=28% Similarity=0.345 Sum_probs=35.8
Q ss_pred CcCeeeeecccccchhhHHHHHHHHHHhc-----C-CCCceEEE---EeeEEEcCCCccccccCCCccCc
Q psy15223 969 IFPADLYLEGSDQHRGWFHSSLLTSIILN-----K-SAPYKALL---THGFVVDSKGKKMSKSKGNIIKP 1029 (2492)
Q Consensus 969 ~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~-----~-~~p~k~v~---~hG~vld~~G~KMSKS~GN~i~p 1029 (2492)
.|.+|+...|.||.. |-.|..-++-. | .-|....+ .|-++...+|+|||||.+|.|..
T Consensus 147 ~~~~d~VpvG~DQ~q---hleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg~KMSKS~~n~I~L 213 (332)
T PRK12556 147 LFQATHVPVGKDQIQ---HIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDGRKMSKSYGNVIPL 213 (332)
T ss_pred hccCCEEEeccccHH---HHHHHHHHHHHHHHhccccCCCceeccccccccccCCCCCCCCCCCCCcccc
Confidence 456889999999984 22332222211 1 11222323 36666678899999999998854
No 301
>PRK02135 hypothetical protein; Provisional
Probab=87.80 E-value=5.6 Score=45.84 Aligned_cols=154 Identities=19% Similarity=0.265 Sum_probs=93.2
Q ss_pred cccHHHHHHHHHHHHhc---cccceeEEEEec-CCCchHHHHHHHhhhcCccEEEEEecccc-cccchhhHhHHHHHHHH
Q psy15223 1389 GVMQKQCEKLLKSFFIK---RRNFVKNKIQAL-PENRKFDLIIEKSVELGVKIIQPIITNRC-IIQLNNERIIKKRIRWK 1463 (2492)
Q Consensus 1389 g~l~~e~~~l~~~f~~~---rr~~~~~l~~a~-~k~~~~~~~l~k~tElGv~~i~p~~~~rs-~~~~~~~~~~~~~~r~~ 1463 (2492)
|-|.-=|+-+...||-+ ||+-.+.+++.- |.+. +.+=+...+- ...++...+ ..-++
T Consensus 27 GR~DilcR~v~sAlflSh~iR~Dv~v~lvL~g~p~p~---------------~tI~f~G~~lr~l~PDErs~---a~~I~ 88 (201)
T PRK02135 27 GRLDILCRCVNSAFFLSHDIRRDVRVHLVLEGTPDPP---------------KTIRFEGSELRRLNPDERST---AALIK 88 (201)
T ss_pred cchhHHHHHHHHHHHHhcCccCCeEEEEEEcCCCCCC---------------eEEEEechhcccCCccHHHH---HHHHH
Confidence 45666788899999876 888888887764 3222 1222222221 112222111 11122
Q ss_pred HHHHHH---HhhhCCCCCCeec-cCCChhHHHhcc-cccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHH
Q psy15223 1464 NIIISA---TEQSGRNILPVLA-PNIYFNNWLISK-ISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEEN 1538 (2492)
Q Consensus 1464 ~i~~~a---~~Q~~r~~~p~i~-~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~ 1538 (2492)
|.+... +...-+-..|-|. .-.+|++.+... .....+++++.|.+.... ..+++.+++.|=-=||+++|.+
T Consensus 89 kAL~~~~~~~~~~~~e~~pGi~V~~~~fe~ll~~~~e~~~l~~L~e~G~~i~~~----~~~~~~~FvLgDH~~~~~ee~~ 164 (201)
T PRK02135 89 KALDASEGMIGEQEREVTPGIYVRRRGFEDLLEELAEGKTLYYLHEDGEDIRDV----EFPENPVFVLGDHIGFTEEEEN 164 (201)
T ss_pred HHHhcccccccccccccCCCEEEecCCHHHHHHHHhcCCcEEEEeCCCCchhhc----cCCCCCEEEEeCCCCCCHHHHH
Confidence 222221 1111233456443 225888877654 335678888888764311 2234446889999999999999
Q ss_pred HHHHcCCeEeecCCccceeeccchhh
Q psy15223 1539 LAYECGVIILSLGKRILRTETASLVA 1564 (2492)
Q Consensus 1539 ~~~~~gf~~vsLG~rILR~ETA~~~~ 1564 (2492)
+|+..|...|||||+.|=|.-+.+++
T Consensus 165 ~L~~~ga~~iSlGP~~l~AshcI~~v 190 (201)
T PRK02135 165 LLKRLGAEKISLGPKMLHADHCITLI 190 (201)
T ss_pred HHHHhCCeEEEeCcHHHHHHHHHHHH
Confidence 99999999999999999887765543
No 302
>KOG1148|consensus
Probab=85.51 E-value=1.8 Score=55.80 Aligned_cols=99 Identities=22% Similarity=0.162 Sum_probs=59.0
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR 525 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~ 525 (2492)
..|.+ +.+-=||=|||-||||||-.--+-==++++ +.|..-+. +| +..|+.
T Consensus 244 ~TGGk--V~TRFPPEPNG~LHIGHaKAInvNFgyAk~--~~G~cyLR---fD----------------DTNPEk------ 294 (764)
T KOG1148|consen 244 RTGGK--VVTRFPPEPNGILHIGHAKAINVNFGYAKA--HGGVCYLR---FD----------------DTNPEK------ 294 (764)
T ss_pred hhCCe--eEEeCCCCCCceeeecchhheeechhhhhh--hCCeEEEe---cC----------------CCCcch------
Confidence 44443 557789999999999998431111111221 11211110 11 334544
Q ss_pred HHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 526 ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 526 ~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
-.+++.+.+++...=||. +-+-.|.+.+|-......=.+|.++|+.|-
T Consensus 295 -Eee~yf~sI~e~V~WLG~----~P~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 295 -EEEEYFESIKEMVAWLGF----EPYKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred -hhHHHHHHHHHHHHHhCC----CceeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 345566777766665665 656678887776666666778999999886
No 303
>KOG4426|consensus
Probab=85.44 E-value=11 Score=46.93 Aligned_cols=139 Identities=14% Similarity=0.172 Sum_probs=87.1
Q ss_pred eEEEEeeEEEcCCCccccccCCCccCcchhhhh-------------------------------cChhhHHHHhhccCcc
Q psy15223 1003 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-------------------------------FGAEILRLWVASTDYS 1051 (2492)
Q Consensus 1003 k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~-------------------------------yGaD~lRl~l~s~~~~ 1051 (2492)
....--|.|+.++|+|+-...|.+|-..|++++ || .+.|.=++++-.
T Consensus 432 V~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayG--ciKYaDL~hnR~ 509 (656)
T KOG4426|consen 432 VEHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYG--CIKYADLSHNRI 509 (656)
T ss_pred eeeeeeeeEEccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhc--chhHhhhccccc
Confidence 455667889999999999999999998888762 33 244444445555
Q ss_pred cccccCHHHHHH--------HHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHH-HHHHHHHHHHHHHhcc
Q psy15223 1052 KDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAII-NITNLQKEILSHYRMY 1122 (2492)
Q Consensus 1052 ~d~~fs~~~l~~--------~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~-~l~~~~~~v~~a~~~~ 1122 (2492)
+|..||-+.+-. ..-++.||++++|.--....+........+.-.+...+.|-|. .|.++.+-+..+.++.
T Consensus 510 ~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~~~L 589 (656)
T KOG4426|consen 510 TDYIFSFDKMLEDRGNTAVYLLYAYTRICSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKALDSL 589 (656)
T ss_pred cceeeeHHHHhhccCcceehhHHHHHHHHHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 677777665421 1125667777776421100000000000011123334556554 5778888899999999
Q ss_pred chHHHHHHHHHHHhhhhhhhHH
Q psy15223 1123 EFHMIVSKLQIYCSEDLGSFYL 1144 (2492)
Q Consensus 1123 ~f~~a~~~l~~f~~~~ls~~Yl 1144 (2492)
-.|..+..+++++ ..|..||=
T Consensus 590 ~lh~lC~y~y~l~-t~Ft~FY~ 610 (656)
T KOG4426|consen 590 FLHVLCDYLYELA-TLFTEFYD 610 (656)
T ss_pred HHHHHHHHHHHHH-HHHHHHhh
Confidence 9999999999998 57888883
No 304
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=84.98 E-value=0.57 Score=60.14 Aligned_cols=60 Identities=28% Similarity=0.308 Sum_probs=36.5
Q ss_pred CCcCeeeeecccccchhhHHHHHHHHHHhc-----CCCCc--e-EEE-E-eeEEEcCCCccccccCCCccCcc
Q psy15223 968 LIFPADLYLEGSDQHRGWFHSSLLTSIILN-----KSAPY--K-ALL-T-HGFVVDSKGKKMSKSKGNIIKPQ 1030 (2492)
Q Consensus 968 ~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~-----~~~p~--k-~v~-~-hG~vld~~G~KMSKS~GN~i~p~ 1030 (2492)
..|-+|+...|.||.. |-.|..-++-. +...| . .++ . +..+.+.+|+|||||.+|.|...
T Consensus 145 Lly~ad~VPVG~DQ~q---HlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L~ 214 (431)
T PRK12284 145 LMFNAHKVPVGRDQIQ---HIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGRKMSKSYDNTIPLF 214 (431)
T ss_pred hhcCCCEEEEcchhHH---HHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCCccccCCCCCEeeec
Confidence 3456789999999985 33333322221 11112 2 222 1 34677788999999999998544
No 305
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=84.87 E-value=0.53 Score=59.54 Aligned_cols=60 Identities=32% Similarity=0.291 Sum_probs=36.1
Q ss_pred CcCceeeecccchhhhhHHHHHHHHHHh-----cCCccc--cE-EEE-eeeEEcCCC-ceeeeccCCccCcch
Q psy15223 2119 IFPADLYLEGSDQHRGWFHSSLLTSIIL-----NKSAPY--KA-LLT-HGFVVDSKG-KKMSKSKGNIIKPQK 2181 (2492)
Q Consensus 2119 ~~P~Dl~~~G~D~~r~wf~~~l~~~~~l-----~~~~pf--k~-v~~-hG~vld~~G-~KMSKS~GNvi~p~~ 2181 (2492)
-|.+|+...|.||.. |.+|..-++- .+..-| .. ++. |.++.+.+| .|||||.+|.|...|
T Consensus 140 ~~~~d~vpvG~DQ~~---h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 140 AFKATLVPVGDDQLP---MIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred hhCCCEEEeccccHH---HHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 367899999999974 2233322221 121111 11 211 456666676 899999999887655
No 306
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=84.62 E-value=0.95 Score=58.16 Aligned_cols=70 Identities=26% Similarity=0.250 Sum_probs=43.1
Q ss_pred CcCceeeecccchhhhhHHHHHHHHHHh-cCCccccEEEEeeeEEcC-CC-ceeeeccCC-ccCcchhhhccChhHHHHH
Q psy15223 2119 IFPADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYKALLTHGFVVDS-KG-KKMSKSKGN-IIKPQKLCNLFGAEILRLW 2194 (2492)
Q Consensus 2119 ~~P~Dl~~~G~D~~r~wf~~~l~~~~~l-~~~~pfk~v~~hG~vld~-~G-~KMSKS~GN-vi~p~~ii~~yGaD~lR~~ 2194 (2492)
.+-+|+...|.||.. |.+|..-++- ++..+-.-++.|.++.+. +| .|||||.+| .|...| .++.+|=-
T Consensus 208 ~l~adivpvG~DQ~~---~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D-----spe~I~kK 279 (383)
T PTZ00126 208 YLKADICQLGMDQRK---VNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED-----SEEDVNRK 279 (383)
T ss_pred ccCCCEEEeCccHHH---HHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCeecCCC-----CHHHHHHH
Confidence 356899999999974 2333333332 222222234567888777 35 799999988 577665 45555544
Q ss_pred Hh
Q psy15223 2195 VA 2196 (2492)
Q Consensus 2195 l~ 2196 (2492)
+.
T Consensus 280 I~ 281 (383)
T PTZ00126 280 IK 281 (383)
T ss_pred HH
Confidence 44
No 307
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=84.47 E-value=0.81 Score=56.66 Aligned_cols=69 Identities=33% Similarity=0.328 Sum_probs=44.1
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHh--cCC----ccccEEEEe--eeEEcCCC--ceeeeccC-CccCcchhhhccCh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIIL--NKS----APYKALLTH--GFVVDSKG--KKMSKSKG-NIIKPQKLCNLFGA 2188 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l--~~~----~pfk~v~~h--G~vld~~G--~KMSKS~G-Nvi~p~~ii~~yGa 2188 (2492)
|-+|+...|.||.. |-.+..-++- ... .+-...+.| .++.+.+| .|||||.| |.|...| .+
T Consensus 136 ~~~~~vpvG~DQ~~---h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d-----~~ 207 (280)
T cd00806 136 YKACLVPVGIDQDP---HLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD-----SP 207 (280)
T ss_pred ccCCEEeeccccHH---HHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC-----CH
Confidence 34588888999974 3333333322 211 233566777 78877776 59999999 9998765 45
Q ss_pred hHHHHHHh
Q psy15223 2189 EILRLWVA 2196 (2492)
Q Consensus 2189 D~lR~~l~ 2196 (2492)
+.+|=-+.
T Consensus 208 ~~i~~KI~ 215 (280)
T cd00806 208 KEIKKKIM 215 (280)
T ss_pred HHHHHHHH
Confidence 55655444
No 308
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=84.37 E-value=0.57 Score=59.89 Aligned_cols=59 Identities=27% Similarity=0.174 Sum_probs=37.7
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcC----CccccEEEEeeeEEcCCCceeeecc-CCccCcch
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNK----SAPYKALLTHGFVVDSKGKKMSKSK-GNIIKPQK 2181 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~----~~pfk~v~~hG~vld~~G~KMSKS~-GNvi~p~~ 2181 (2492)
|-+++...|.||.. |..+..-++-.- ..+-...+.|-++.+.+|.|||||. +|.|...|
T Consensus 202 ~~~~lvPvG~DQ~~---h~~ltRdiA~r~n~~~gf~~P~~l~~~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 202 PKPTLVPVGIDQDP---HIRLTRDIAERLHGGYGFIKPSSTYHKFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred CCceEEEeccchHH---HHHHHHHHHHHHhhhcCCCCchhHhhhcccCCCCCcCCCCCCCCeeeccC
Confidence 34689999999974 223332222110 1222345556788888999999998 67887765
No 309
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=84.23 E-value=0.77 Score=58.98 Aligned_cols=69 Identities=25% Similarity=0.196 Sum_probs=41.2
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHh-----cCCccc--cEEEE---eeeEEcCCCceeeeccCCccCcchhhhccChh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIIL-----NKSAPY--KALLT---HGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAE 2189 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l-----~~~~pf--k~v~~---hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD 2189 (2492)
|-+|+...|.||.. |-.|..-++- ++...| +..++ +..+.+.+|+|||||.+|.|...| .+|
T Consensus 147 y~ad~VPVG~DQ~q---HlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L~D-----s~~ 218 (431)
T PRK12284 147 FNAHKVPVGRDQIQ---HIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGRKMSKSYDNTIPLFA-----PRE 218 (431)
T ss_pred cCCCEEEEcchhHH---HHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCCccccCCCCCEeeecC-----CHH
Confidence 55789999999984 3333332221 122112 22222 346777889999999999986543 355
Q ss_pred HHHHHHh
Q psy15223 2190 ILRLWVA 2196 (2492)
Q Consensus 2190 ~lR~~l~ 2196 (2492)
.+|=-+.
T Consensus 219 ~I~kKI~ 225 (431)
T PRK12284 219 ELKKAIF 225 (431)
T ss_pred HHHHHHh
Confidence 5555444
No 310
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=84.22 E-value=1 Score=54.95 Aligned_cols=52 Identities=56% Similarity=0.997 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 2 LDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 2 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
.++++++++.|+|||+++...+.....+++++...|.+|++.+||.|++.+.
T Consensus 157 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~dril~~TD~p~~~~~ 208 (251)
T cd01310 157 AEEAKELLDLGFYISISGIVTFKNANELREVVKEIPLERLLLETDSPYLAPV 208 (251)
T ss_pred HHHHHHHHHcCCEEEeeeeeccCCCHHHHHHHHhCChHHEEEcccCCCCCCC
Confidence 4788999999999999998877666779999999999999999999998643
No 311
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=84.00 E-value=1 Score=57.82 Aligned_cols=60 Identities=28% Similarity=0.295 Sum_probs=37.9
Q ss_pred CcCeeeeecccccchhhHHHHHHHHHHhc-CCCCceEEEEeeEEEcC-CC-ccccccCCC-ccCcch
Q psy15223 969 IFPADLYLEGSDQHRGWFHSSLLTSIILN-KSAPYKALLTHGFVVDS-KG-KKMSKSKGN-IIKPQK 1031 (2492)
Q Consensus 969 ~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~-~~~p~k~v~~hG~vld~-~G-~KMSKS~GN-~i~p~~ 1031 (2492)
.+-+|+...|.||.. |.+|..-++-. +..+-.-++.|.++.+. +| .|||||.+| .|...|
T Consensus 208 ~l~adivpvG~DQ~~---~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 208 YLKADICQLGMDQRK---VNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred ccCCCEEEeCccHHH---HHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCeecCCC
Confidence 456899999999974 22343333322 22222234567888877 35 799999988 576655
No 312
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=83.84 E-value=0.61 Score=58.96 Aligned_cols=63 Identities=29% Similarity=0.226 Sum_probs=35.8
Q ss_pred CcCeeeeecccccchhh-HHHHHHHHHHh-cCCC--CceE-EEE-eeEEEcCCC-ccccccCCCccCcch
Q psy15223 969 IFPADLYLEGSDQHRGW-FHSSLLTSIIL-NKSA--PYKA-LLT-HGFVVDSKG-KKMSKSKGNIIKPQK 1031 (2492)
Q Consensus 969 ~~p~Dl~~~G~D~~rgw-f~s~l~~~~~~-~~~~--p~k~-v~~-hG~vld~~G-~KMSKS~GN~i~p~~ 1031 (2492)
.|.+|+...|.||...+ +.+-++...-. .+.. +... ++. |.++.+.+| .|||||.+|.|...|
T Consensus 140 ~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 140 AFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred hhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 46789999999998411 11222222211 1211 1111 221 456667776 899999999887554
No 313
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=83.34 E-value=1 Score=55.87 Aligned_cols=59 Identities=36% Similarity=0.335 Sum_probs=38.6
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCC------CCceEEEEe--eEEEcCCC--ccccccCC-CccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKS------APYKALLTH--GFVVDSKG--KKMSKSKG-NIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~------~p~k~v~~h--G~vld~~G--~KMSKS~G-N~i~p~~ 1031 (2492)
+-+|+...|.||.. |-.+..-++-.-+ .+-...+.| .++.+.+| .|||||.| |.|...|
T Consensus 136 ~~~~~vpvG~DQ~~---h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 136 YKACLVPVGIDQDP---HLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred ccCCEEeeccccHH---HHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 34688888999974 3333322222111 233566777 88877777 49999999 9997765
No 314
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.68 E-value=0.85 Score=56.29 Aligned_cols=61 Identities=25% Similarity=0.227 Sum_probs=38.2
Q ss_pred CcCeeeeecccccchhh-HHHHHHHHHHhc--CCCCceEEEEee--EEEcCCC-ccccccCCC-ccCc
Q psy15223 969 IFPADLYLEGSDQHRGW-FHSSLLTSIILN--KSAPYKALLTHG--FVVDSKG-KKMSKSKGN-IIKP 1029 (2492)
Q Consensus 969 ~~p~Dl~~~G~D~~rgw-f~s~l~~~~~~~--~~~p~k~v~~hG--~vld~~G-~KMSKS~GN-~i~p 1029 (2492)
.|-+++.--|.||-..+ +.+-+....-.. ..-+-...+.|. ++.+.+| +|||||.+| +|..
T Consensus 143 l~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L 210 (314)
T COG0180 143 LYQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGPGKMSKSDPNSAIFL 210 (314)
T ss_pred hccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCCCcccccCCCCeeec
Confidence 34467778899997411 222222222111 123336677777 8988999 899999999 7754
No 315
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=82.64 E-value=0.76 Score=58.80 Aligned_cols=59 Identities=27% Similarity=0.174 Sum_probs=37.5
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcC----CCCceEEEEeeEEEcCCCccccccC-CCccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNK----SAPYKALLTHGFVVDSKGKKMSKSK-GNIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~----~~p~k~v~~hG~vld~~G~KMSKS~-GN~i~p~~ 1031 (2492)
|-+++...|.||.. |-.|..-++-.- ..+-...+.|-++.+.+|.|||||. +|.|...|
T Consensus 202 ~~~~lvPvG~DQ~~---h~~ltRdiA~r~n~~~gf~~P~~l~~~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 202 PKPTLVPVGIDQDP---HIRLTRDIAERLHGGYGFIKPSSTYHKFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred CCceEEEeccchHH---HHHHHHHHHHHHhhhcCCCCchhHhhhcccCCCCCcCCCCCCCCeeeccC
Confidence 45789999999984 222322222111 1222345556788888999999998 67887654
No 316
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.32 E-value=0.87 Score=56.22 Aligned_cols=61 Identities=25% Similarity=0.203 Sum_probs=37.7
Q ss_pred cCceeeecccchhhhh-HHHHHHHHHHhc--CCccccEEEEee--eEEcCCC-ceeeeccCC-ccCcc
Q psy15223 2120 FPADLYLEGSDQHRGW-FHSSLLTSIILN--KSAPYKALLTHG--FVVDSKG-KKMSKSKGN-IIKPQ 2180 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~w-f~~~l~~~~~l~--~~~pfk~v~~hG--~vld~~G-~KMSKS~GN-vi~p~ 2180 (2492)
|-+++.--|.||-..+ +.+-+....-.. ...+-...+.|. ++.+.+| .|||||.+| +|...
T Consensus 144 ~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~ 211 (314)
T COG0180 144 YQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGPGKMSKSDPNSAIFLL 211 (314)
T ss_pred ccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCCCcccccCCCCeeecc
Confidence 4457788899997311 223333222211 123335667777 8888888 899999999 76543
No 317
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=82.32 E-value=2 Score=52.40 Aligned_cols=86 Identities=14% Similarity=0.068 Sum_probs=57.9
Q ss_pred cccccccccc-cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCC--CeEEEE----cCC
Q psy15223 53 IPHRAKLALI-AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSK--NYKIYV----TLE 124 (2492)
Q Consensus 53 a~~~a~~~~~-~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~--~~~ly~----t~E 124 (2492)
|.+.+..|.. -.+.||||+|+ +||+|. .|.|-.+...+++.+||.+||-.+.......++.. ...|-- ...
T Consensus 181 A~~a~~~sYaPYS~f~vgaal~~~~g~i~-~G~nvENAay~~slcaer~Ai~~~v~~g~g~~~~~i~~aVl~e~~~~~vs 259 (283)
T TIGR01355 181 ALKAANRSYAPYSKSPSGVALLDKEGKVY-RGWYIESAAFNPSLGPVQAALVDFMANGGGKGFEDIVRAVLVEKADAKVS 259 (283)
T ss_pred HHHHHHhccCCCcCCceeEEEEeCCCCEE-EEEEeecCCCCCcccHHHHHHHHHHHhCCCCChhheeEEEEEecCCCccC
Confidence 3333344432 34789999999 577766 99999989999999999999999876532222221 122221 236
Q ss_pred ChHhHHHHHHHhCCc
Q psy15223 125 PCAMCAGAIIHVRLG 139 (2492)
Q Consensus 125 PC~mC~~ai~~~gi~ 139 (2492)
||.||...|..-+..
T Consensus 260 ~~~~~r~~l~~~~p~ 274 (283)
T TIGR01355 260 HEATARTLLETIAPS 274 (283)
T ss_pred hHHHHHHHHHHhCCC
Confidence 899999888776533
No 318
>COG1901 Uncharacterized conserved protein [Function unknown]
Probab=81.99 E-value=12 Score=42.19 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=94.2
Q ss_pred cccHHHHHHHHHHHHhc---cccceeEEEE-ecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHH
Q psy15223 1389 GVMQKQCEKLLKSFFIK---RRNFVKNKIQ-ALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKN 1464 (2492)
Q Consensus 1389 g~l~~e~~~l~~~f~~~---rr~~~~~l~~-a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~ 1464 (2492)
|-+.==|+.+.+.||-+ |++-.+.+.+ +.|-+.+ .|..-.++-+...++.-.+ .-.-+
T Consensus 27 GR~DvlcRc~~~alf~sh~~R~dV~v~lvL~G~p~ppk--------------tI~~~g~~~~~~~pdErs~----a~~i~ 88 (197)
T COG1901 27 GRLDVLCRCVSSALFLSHGIRRDVVVYLVLLGPPDPPK--------------TIRVEGSELRYLNPDERSL----AILIK 88 (197)
T ss_pred cchhHHHHHHhHHHHHhccccCceEEEEEEecCCCCCE--------------EEEEEcccccccCcchHHH----HHHHH
Confidence 44555688888888866 7888887777 6665554 2333333333222322111 11111
Q ss_pred HHHHH--HhhhCCCCCCeecc-CCChhHHHhcc-cccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHH
Q psy15223 1465 IIISA--TEQSGRNILPVLAP-NIYFNNWLISK-ISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLA 1540 (2492)
Q Consensus 1465 i~~~a--~~Q~~r~~~p~i~~-~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~ 1540 (2492)
-+.+| -+-..+...|-|.- -..+++.+..- .....+++++.|...-. .. ...+.++++|--=|+|+++...+
T Consensus 89 kAL~~~~~~~~~~~~~pGi~V~~~~~e~ll~~l~~~~~ly~L~E~G~DI~~-v~---~~~np~FIlGDH~g~t~e~~k~L 164 (197)
T COG1901 89 KALDAELGKEQTREVTPGIYVRNGGFEALLAELAEGRSLYYLHEDGRDISE-VD---LIPNPVFILGDHIGLTEEDEKLL 164 (197)
T ss_pred HHHHhhccccceeecCCCEEEecCCHHHHHHHHhccCcEEEEccCCccHhh-cc---cCCCceEEeeCCCCCCHHHHHHH
Confidence 22222 12223335676655 45677766543 22456788877765322 22 13345688999999999999999
Q ss_pred HHcCCeEeecCCccceeeccchhh
Q psy15223 1541 YECGVIILSLGKRILRTETASLVA 1564 (2492)
Q Consensus 1541 ~~~gf~~vsLG~rILR~ETA~~~~ 1564 (2492)
+..+...|||||--|=|+-+..++
T Consensus 165 ~r~~~~~ISlGP~~lha~hcit~~ 188 (197)
T COG1901 165 ERHAAKKISLGPLSLHADHCITLL 188 (197)
T ss_pred HHhhCceeEeCchHHHHHHHHHHH
Confidence 999999999999999888776554
No 319
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=81.02 E-value=11 Score=40.33 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHH
Q psy15223 2215 VETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYL 2294 (2492)
Q Consensus 2215 ~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yl 2294 (2492)
...+.|+.|.++............. ... ...+.++.++..+..+...+..+++.++++.+++.+.++. ..+++||
T Consensus 2 ~Ya~aRi~sIl~k~~~~~~~~~~~~--~~~-~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La-~~f~~fy- 76 (119)
T PF05746_consen 2 QYAYARISSILRKAEESGINDEYDD--DFL-LEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELA-QAFNSFY- 76 (119)
T ss_dssp HHHHHHHHHHHHHCTCTTCCCCHCC--HHH-S-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHH-HHHHHHH-
T ss_pred hHHHHHHHHHHHcCCCcCCccccch--hhh-cCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHH-
Confidence 3567788888886543322111110 000 1355788899999999999999999999999999999998 5788877
Q ss_pred HhhhhhhccccCCh--HHHHHHHHHHHHHHHHHHHHHh
Q psy15223 2295 DILKDRLYTTKKNS--HARRSAQTSIWHINQSLLRLIS 2330 (2492)
Q Consensus 2295 e~~K~~l~~~~~~~--~~r~~~~~~l~~il~~l~~lLa 2330 (2492)
+ +-+........ ..|.........++...+.+|.
T Consensus 77 ~--~~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llg 112 (119)
T PF05746_consen 77 D--NVRILDEDEEIRKNNRLALLKAVRQVLKNGLDLLG 112 (119)
T ss_dssp H--HS-STTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred h--hccccccchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3 22333332221 3445555555566666666653
No 320
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.00 E-value=1.3 Score=56.73 Aligned_cols=53 Identities=34% Similarity=0.371 Sum_probs=35.9
Q ss_pred ceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCcc
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNII 2177 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi 2177 (2492)
+|+.++|.||-+++....=+.-. +.. .-.-.+++.++.+.+|.|||||.||.+
T Consensus 181 ~dlq~GG~DQ~~ni~~grdl~rr-~g~--~~~~~lt~PLL~~ldG~KmgKs~~~a~ 233 (401)
T COG0162 181 KDLQLGGSDQWGNILAGRDLIRR-LGQ--KKVVGLTTPLLTGLDGKKMGKSEGGAV 233 (401)
T ss_pred cchhcCChHHHHHHHHHHHHHHH-hCC--CCeEEEEeccccCCCCCcccccCCCce
Confidence 67999999998655333222211 222 223467777888999999999999943
No 321
>PF04013 Methyltrn_RNA_2: Putative SAM-dependent RNA methyltransferase; InterPro: IPR007158 The proteins in this family are around 200 amino acids long with the exception of O29206 from SWISSPROT that has an additional 100 amino acids at its N terminus. The function of these bacterial protein is unknown, however, they do contain several conserved histidines and aspartates that might form a metal-binding site.; PDB: 2QMM_A 3AIA_A 3AI9_X 2QWV_B.
Probab=80.65 E-value=11 Score=43.55 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=84.8
Q ss_pred cccHHHHHHHHHHHHhc---cccceeEEEEe-cCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHH
Q psy15223 1389 GVMQKQCEKLLKSFFIK---RRNFVKNKIQA-LPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKN 1464 (2492)
Q Consensus 1389 g~l~~e~~~l~~~f~~~---rr~~~~~l~~a-~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~ 1464 (2492)
|-|.-=|+.+...||-+ ||+-.+.+++- -|.+.+ .|.+.-++-.....++ +. .-.
T Consensus 27 GRlDiLcR~v~~AlflSh~~R~Dv~v~lvL~g~pdp~~--------------tI~f~g~~lr~l~pDE-rs------~a~ 85 (199)
T PF04013_consen 27 GRLDILCRCVNAALFLSHGIRRDVRVYLVLLGPPDPPR--------------TIRFEGSELRRLNPDE-RS------IAA 85 (199)
T ss_dssp TSHHHHHHHHHHHHBESSSB-TTEEEEEEEEESSSS-E--------------EEEEETTT--S--SSH-HH------HHH
T ss_pred hhHHHHHHHHHHHHHHhcCcccceEEEEEEecCCCCCE--------------EEEEeccccCCCCccH-HH------HHH
Confidence 55777899999999975 88888877765 444433 2333332222222222 11 223
Q ss_pred HHHHHHhhhC---CCC---CCeec-cCCChhHHHhcccc-cceEEeccCCcccccccccCCCCC-ceEEEecCCCCCCHH
Q psy15223 1465 IIISATEQSG---RNI---LPVLA-PNIYFNNWLISKIS-CARILLSPRGRKKLSCWANNQSPQ-EVELLIGPEGGFTEK 1535 (2492)
Q Consensus 1465 i~~~a~~Q~~---r~~---~p~i~-~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~iGPEGG~s~~ 1535 (2492)
+++.|.+.-+ ..+ .|-|. .-.+|++.+..... ...+++++.|.+.... ..+. +.+++.|=--||+++
T Consensus 86 li~kAL~~~~~~~~~~~e~~pGi~v~~~~fe~ll~~~~~~~~l~~L~e~G~di~~~----~~~~~d~~FVLgDH~g~~~e 161 (199)
T PF04013_consen 86 LIKKALEKRGMIGEQWRESTPGIYVRKGGFEDLLEELAEEYPLYYLHEDGEDIRDV----EFPGNDPVFVLGDHIGFTEE 161 (199)
T ss_dssp HHHHHHCHCCTGCCSEEEEETTEEEE---HHHHHHHHHCTSEEEEESTTSEEGGGS-------S-SEEEEEE-TT-SHHH
T ss_pred HHHHHHhcCCCCCceeeecCCCEEEecCCHHHHHHHHhcCCcEEEEcCCCCcHhhc----ccCCCCCeEEEeCCCCCCHH
Confidence 4444443331 111 23222 22478887765332 4678888887654322 1233 678999999999999
Q ss_pred HHHHHHHcCCeEeecCCccceeeccchhh
Q psy15223 1536 EENLAYECGVIILSLGKRILRTETASLVA 1564 (2492)
Q Consensus 1536 E~~~~~~~gf~~vsLG~rILR~ETA~~~~ 1564 (2492)
|.++|++.|...|||||..|=|.-+.+++
T Consensus 162 ee~~L~~~~a~kiSlGP~~lhAdhcI~iv 190 (199)
T PF04013_consen 162 EEELLERLGAEKISLGPKSLHADHCITIV 190 (199)
T ss_dssp HHHHHHCTTSEEEES-SS---HHHHHHHH
T ss_pred HHHHHHHccCceEEeCCHHHHHHHHHHHH
Confidence 99999999999999999999887766554
No 322
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=79.53 E-value=13 Score=39.74 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHH
Q psy15223 1066 ETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLD 1145 (2492)
Q Consensus 1066 ~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~ 1145 (2492)
-++.|+.|.++............. ... ...+.++-++..+..+...+..+++.++++.+++.+.+++ ..+++||=+
T Consensus 3 Ya~aRi~sIl~k~~~~~~~~~~~~--~~~-~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La-~~f~~fy~~ 78 (119)
T PF05746_consen 3 YAYARISSILRKAEESGINDEYDD--DFL-LEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELA-QAFNSFYDN 78 (119)
T ss_dssp HHHHHHHHHHHHCTCTTCCCCHCC--HHH-S-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCccccch--hhh-cCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHhh
Confidence 457788898886544332211111 000 1345677788999999999999999999999999999999 678888832
Q ss_pred hhhhhhccccCC-h-HHHHHHHHHHHHHHHHHHHHhc
Q psy15223 1146 ILKDRLYTTKKN-S-HARRSAQTSIWHINQSLLRLIS 1180 (2492)
Q Consensus 1146 ~~Kdrl~~~~~~-~-~~r~sa~~~L~~il~~l~~lLa 1180 (2492)
-+...++.. . ..|.........++...+.+|.
T Consensus 79 ---~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llg 112 (119)
T PF05746_consen 79 ---VRILDEDEEIRKNNRLALLKAVRQVLKNGLDLLG 112 (119)
T ss_dssp ---S-STTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---ccccccchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 233333222 1 4455556666666776666664
No 323
>KOG1195|consensus
Probab=78.50 E-value=16 Score=47.24 Aligned_cols=145 Identities=14% Similarity=0.166 Sum_probs=91.4
Q ss_pred chhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccc-------------
Q psy15223 1577 PGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYV------------- 1643 (2492)
Q Consensus 1577 ~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~------------- 1643 (2492)
.-.+..|+....|... +. -..++-++-..-|+.+-..|+||.+.-++.-+++.-++-.|+.|.-+
T Consensus 89 ~~l~~i~~~~~~~g~~-~~-~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll 166 (567)
T KOG1195|consen 89 SVLPIIEEQREKYGKN-EL-GSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLL 166 (567)
T ss_pred HHHHHHHHHhcccCcc-cc-ccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHH
Confidence 3345566666666542 11 23467889999999999999999999999999999999999999654
Q ss_pred -cccccCCh-------HHHHHHHHHhcc---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15223 1644 -PGYDCHGM-------PIEIQIEKLYGK---------------------NLSPIEIQNKARALAYEKIEQQKMDFMRLGI 1694 (2492)
Q Consensus 1644 -~G~D~hGl-------Pie~~a~k~~~~---------------------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi 1694 (2492)
-||--.|- ||++-.+.-... +.+.++-.+..+.|-.-.|+...+..+|+|+
T Consensus 167 ~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v 246 (567)
T KOG1195|consen 167 ALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNV 246 (567)
T ss_pred hccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhce
Confidence 35555554 555433221111 0111222222333445666777778888888
Q ss_pred cccccCeeccCChHHHHHHHHHHHHHHhCCce
Q psy15223 1695 LGEWDNSYKTMDFLNEANELRAFGIIFKKGYV 1726 (2492)
Q Consensus 1695 ~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGli 1726 (2492)
-+| .|.--+.-+.+..+.+...+.++||+
T Consensus 247 ~FD---~y~gESqv~~e~~~~~~d~~rs~~l~ 275 (567)
T KOG1195|consen 247 KFD---EYSGESQVSNEKMQEALDLLRSANLT 275 (567)
T ss_pred eee---eccchHHHHHHHHHHHHHHHHhcCCc
Confidence 665 22223345566666666667666653
No 324
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=78.43 E-value=1.6 Score=55.68 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=21.1
Q ss_pred EeeEEEcCCCccccccCCCccCcch
Q psy15223 1007 THGFVVDSKGKKMSKSKGNIIKPQK 1031 (2492)
Q Consensus 1007 ~hG~vld~~G~KMSKS~GN~i~p~~ 1031 (2492)
.|.++.+.+|+|||||.+|.|...|
T Consensus 253 ~~~~I~gLdg~KMSKS~~n~I~L~D 277 (398)
T PRK12283 253 EASKMPGLDGQKMSKSYGNTIGLRE 277 (398)
T ss_pred CCCcccCCCCCcCCCCCCCeeeCcC
Confidence 3678888899999999999987655
No 325
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=78.21 E-value=1.6 Score=55.69 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=27.2
Q ss_pred EeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2157 THGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2157 ~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
.|.++.+.+|+|||||.+|.|...| .+|.+|=-+..
T Consensus 253 ~~~~I~gLdg~KMSKS~~n~I~L~D-----s~~~I~kKI~~ 288 (398)
T PRK12283 253 EASKMPGLDGQKMSKSYGNTIGLRE-----DPESVTKKIRT 288 (398)
T ss_pred CCCcccCCCCCcCCCCCCCeeeCcC-----CHHHHHHHHHh
Confidence 3678888899999999999988665 46666655543
No 326
>PLN02486 aminoacyl-tRNA ligase
Probab=77.77 E-value=13 Score=47.90 Aligned_cols=89 Identities=24% Similarity=0.208 Sum_probs=52.2
Q ss_pred CCCcEEEEcCCCCCCC-cccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHH
Q psy15223 448 NRPKFILHDGPPYANG-DIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARA 526 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG-~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~ 526 (2492)
.+++|++..|. -|+| .+||||.. .-..+..++...|..+....+ |. |...- .+++.+++++
T Consensus 70 ~~~~~~vYtG~-~PSg~~lHlGHlv---~~~~~~~lQ~~~~~~~~I~ia-D~-----e~~~~----~~~~~e~i~~---- 131 (383)
T PLN02486 70 KGEKFYLYTGR-GPSSEALHLGHLI---PFMFTKYLQDAFKVPLVIQLT-DD-----EKFLW----KNLSVEESQR---- 131 (383)
T ss_pred cCCCeEEEeCC-CCCCccccHHHHH---HHHHHHHHHHhCCCeEEEEec-CH-----HHHhh----cCCCHHHHHH----
Confidence 35678888887 7888 59999954 444455666666766655543 53 32222 2577777544
Q ss_pred HHHHHHHHHHHHHHHccccccccCeeecCChHHH
Q psy15223 527 LAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNE 560 (2492)
Q Consensus 527 ~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~ 560 (2492)
++.+++.. +..+|+ |-++.+.-.|-.+.
T Consensus 132 ~~~en~~~----iiA~G~--dp~kt~I~s~~~~~ 159 (383)
T PLN02486 132 LARENAKD----IIACGF--DVERTFIFSDFDYV 159 (383)
T ss_pred HHHHHHHH----HHHhCC--CCcceEEEeccHHH
Confidence 44444433 344776 55555544555544
No 327
>KOG4426|consensus
Probab=77.47 E-value=34 Score=43.03 Aligned_cols=145 Identities=14% Similarity=0.166 Sum_probs=87.5
Q ss_pred CccccEEEEeeeEEcCCCceeeeccCCccCcchhhhc-----------------cC-------hh-----HHHHHHhccC
Q psy15223 2149 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-----------------FG-------AE-----ILRLWVASTD 2199 (2492)
Q Consensus 2149 ~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-----------------yG-------aD-----~lR~~l~s~~ 2199 (2492)
..|=...+--|.|+.++|+|+-...|.+|-..|++++ .. ++ ++.|.=++++
T Consensus 428 ~~~RV~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hn 507 (656)
T KOG4426|consen 428 TYPRVEHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHN 507 (656)
T ss_pred CccceeeeeeeeEEccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccc
Confidence 3344456777899999999999999999998888762 11 11 2333334444
Q ss_pred CCCcccccHHHHHH--------HHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHH-HHHHHHHHHHHHHHh
Q psy15223 2200 YSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAI-INITNLQKEILSHYR 2270 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~--------~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il-~~l~~~~~~v~~a~e 2270 (2492)
-.+|..||.+.+-+ ...++.||.+++|.--....+........+.-.+...+.|-| ..|-++.+.+..+.+
T Consensus 508 R~~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~~ 587 (656)
T KOG4426|consen 508 RITDYIFSFDKMLEDRGNTAVYLLYAYTRICSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKALD 587 (656)
T ss_pred cccceeeeHHHHhhccCcceehhHHHHHHHHHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 45677788766522 123556677766642110000000000000111223344444 457778888899999
Q ss_pred cccHHHHHHHHHHHHHhhhhhhHH
Q psy15223 2271 MYEFHMIVSKLQIYCSEDLGSFYL 2294 (2492)
Q Consensus 2271 ~~~f~~a~~~l~~f~~~~ls~~Yl 2294 (2492)
+.=+|..+..++++. ..|..||=
T Consensus 588 ~L~lh~lC~y~y~l~-t~Ft~FY~ 610 (656)
T KOG4426|consen 588 SLFLHVLCDYLYELA-TLFTEFYD 610 (656)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhh
Confidence 999999999999988 46888883
No 328
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=77.46 E-value=1.9 Score=55.36 Aligned_cols=53 Identities=34% Similarity=0.371 Sum_probs=35.8
Q ss_pred eeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCcc
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNII 1027 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i 1027 (2492)
+|+.++|.||-+.+....=+.-. +.. .-.-.+++-++.+.+|.|||||.||.+
T Consensus 181 ~dlq~GG~DQ~~ni~~grdl~rr-~g~--~~~~~lt~PLL~~ldG~KmgKs~~~a~ 233 (401)
T COG0162 181 KDLQLGGSDQWGNILAGRDLIRR-LGQ--KKVVGLTTPLLTGLDGKKMGKSEGGAV 233 (401)
T ss_pred cchhcCChHHHHHHHHHHHHHHH-hCC--CCeEEEEeccccCCCCCcccccCCCce
Confidence 67999999997644322222221 222 334567777888999999999999943
No 329
>PRK02135 hypothetical protein; Provisional
Probab=77.42 E-value=7.2 Score=45.00 Aligned_cols=80 Identities=24% Similarity=0.295 Sum_probs=60.1
Q ss_pred CCchhHHHhhc-ccccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccch
Q psy15223 352 NIYFNNWLISK-ISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASL 430 (2492)
Q Consensus 352 ~~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~ 430 (2492)
-.+|++++... .+...++++++|.+.... ..+.+..++.|=-=||+++|.+.+...|.+.|||||..|=|.=+..
T Consensus 113 ~~~fe~ll~~~~e~~~l~~L~e~G~~i~~~----~~~~~~~FvLgDH~~~~~ee~~~L~~~ga~~iSlGP~~l~AshcI~ 188 (201)
T PRK02135 113 RRGFEDLLEELAEGKTLYYLHEDGEDIRDV----EFPENPVFVLGDHIGFTEEEENLLKRLGAEKISLGPKMLHADHCIT 188 (201)
T ss_pred cCCHHHHHHHHhcCCcEEEEeCCCCchhhc----cCCCCCEEEEeCCCCCCHHHHHHHHHhCCeEEEeCcHHHHHHHHHH
Confidence 36788877654 344677889888764321 1224456888999999999999999999999999999998887776
Q ss_pred hheee
Q psy15223 431 VALAI 435 (2492)
Q Consensus 431 ~~~~~ 435 (2492)
++...
T Consensus 189 ~vhn~ 193 (201)
T PRK02135 189 LIHNE 193 (201)
T ss_pred HHHHH
Confidence 55443
No 330
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=76.56 E-value=1.6 Score=55.36 Aligned_cols=68 Identities=29% Similarity=0.365 Sum_probs=42.1
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhc-----C---CccccEEE-Ee-eeEEcCCCc--eeeeccC---CccCcchhhh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILN-----K---SAPYKALL-TH-GFVVDSKGK--KMSKSKG---NIIKPQKLCN 2184 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~-----~---~~pfk~v~-~h-G~vld~~G~--KMSKS~G---Nvi~p~~ii~ 2184 (2492)
+-+|+...|.||.. |.++..-++-. + ..| ..++ .| .++.+.+|. |||||.+ |.|...|
T Consensus 137 ~~~divpvG~DQ~~---h~elaRdia~~~n~~~~~~f~~P-~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D--- 209 (333)
T PRK00927 137 YKADLVPVGEDQKQ---HLELTRDIARRFNNLYGEVFPVP-EPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD--- 209 (333)
T ss_pred cCCCEEeeccchHH---HHHHHHHHHHHhhhhccccCCCC-hhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC---
Confidence 45799999999984 44444433321 1 123 2222 22 557777776 9999999 7887765
Q ss_pred ccChhHHHHHHh
Q psy15223 2185 LFGAEILRLWVA 2196 (2492)
Q Consensus 2185 ~yGaD~lR~~l~ 2196 (2492)
.+|.++=-+.
T Consensus 210 --~~~~I~~KI~ 219 (333)
T PRK00927 210 --DPKTIAKKIK 219 (333)
T ss_pred --CHHHHHHHHH
Confidence 4555554444
No 331
>PF04013 Methyltrn_RNA_2: Putative SAM-dependent RNA methyltransferase; InterPro: IPR007158 The proteins in this family are around 200 amino acids long with the exception of O29206 from SWISSPROT that has an additional 100 amino acids at its N terminus. The function of these bacterial protein is unknown, however, they do contain several conserved histidines and aspartates that might form a metal-binding site.; PDB: 2QMM_A 3AIA_A 3AI9_X 2QWV_B.
Probab=76.32 E-value=4.5 Score=46.58 Aligned_cols=78 Identities=23% Similarity=0.292 Sum_probs=51.5
Q ss_pred CchhHHHhhccc-ccEEEeccCCcccccccccCCCCC-ceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccch
Q psy15223 353 IYFNNWLISKIS-CARILLSPRGRKKLSCWANNQSPQ-EVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASL 430 (2492)
Q Consensus 353 ~~~~~~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~-~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~ 430 (2492)
.+|++++..... ...++++++|.+.... ..+. +..++.|=--||+++|.+.+...|.+.|||||..|=|.=+.+
T Consensus 113 ~~fe~ll~~~~~~~~l~~L~e~G~di~~~----~~~~~d~~FVLgDH~g~~~eee~~L~~~~a~kiSlGP~~lhAdhcI~ 188 (199)
T PF04013_consen 113 GGFEDLLEELAEEYPLYYLHEDGEDIRDV----EFPGNDPVFVLGDHIGFTEEEEELLERLGAEKISLGPKSLHADHCIT 188 (199)
T ss_dssp --HHHHHHHHHCTSEEEEESTTSEEGGGS-------S-SEEEEEE-TT-SHHHHHHHHHCTTSEEEES-SS---HHHHHH
T ss_pred CCHHHHHHHHhcCCcEEEEcCCCCcHhhc----ccCCCCCeEEEeCCCCCCHHHHHHHHHccCceEEeCCHHHHHHHHHH
Confidence 567777764332 4567888888764322 1223 678899999999999999999999999999999998887776
Q ss_pred hhee
Q psy15223 431 VALA 434 (2492)
Q Consensus 431 ~~~~ 434 (2492)
++..
T Consensus 189 ivhn 192 (199)
T PF04013_consen 189 IVHN 192 (199)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 332
>KOG1195|consensus
Probab=76.22 E-value=16 Score=47.21 Aligned_cols=125 Identities=15% Similarity=0.213 Sum_probs=85.2
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccc--------------cccccCCc-------hHHHHH
Q psy15223 449 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYV--------------PGYDCHGM-------PIEIQI 507 (2492)
Q Consensus 449 ~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~--------------~GwD~hGl-------piE~~a 507 (2492)
.++-++-..-|+.+-..|+||.+.-++.-+++.-++-.|++|.-+ -||--.|- ||++-.
T Consensus 109 ~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL~ 188 (567)
T KOG1195|consen 109 GKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHLF 188 (567)
T ss_pred CceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHHH
Confidence 478899999999999999999999999999999999999999543 36666665 666543
Q ss_pred HHHhCc---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHH
Q psy15223 508 EKLYGK---------------------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRA 566 (2492)
Q Consensus 508 ~k~~~~---------------------~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~ 566 (2492)
+.-.+. +.+-++-.+.-+.|-+-.|+...+..+|||+-+| .|.--+.-+.+..+.+
T Consensus 189 dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD---~y~gESqv~~e~~~~~ 265 (567)
T KOG1195|consen 189 DVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFD---EYSGESQVSNEKMQEA 265 (567)
T ss_pred HHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeee---eccchHHHHHHHHHHH
Confidence 322111 1112222233333455667777778888888775 3444445666677777
Q ss_pred HHHHHHcCCe
Q psy15223 567 FGIIFKKGYV 576 (2492)
Q Consensus 567 f~~l~~kGli 576 (2492)
...+-.+||+
T Consensus 266 ~d~~rs~~l~ 275 (567)
T KOG1195|consen 266 LDLLRSANLT 275 (567)
T ss_pred HHHHHhcCCc
Confidence 7777777753
No 333
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=76.19 E-value=1.7 Score=55.17 Aligned_cols=58 Identities=34% Similarity=0.425 Sum_probs=36.9
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhc-----C---CCCceEEEE-e-eEEEcCCCc--cccccCC---CccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILN-----K---SAPYKALLT-H-GFVVDSKGK--KMSKSKG---NIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~-----~---~~p~k~v~~-h-G~vld~~G~--KMSKS~G---N~i~p~~ 1031 (2492)
+.+|+...|.||.. |-.|..-++-. + ..| ..++. | .++...+|. |||||.+ |.|...|
T Consensus 137 ~~~divpvG~DQ~~---h~elaRdia~~~n~~~~~~f~~P-~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D 209 (333)
T PRK00927 137 YKADLVPVGEDQKQ---HLELTRDIARRFNNLYGEVFPVP-EPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD 209 (333)
T ss_pred cCCCEEeeccchHH---HHHHHHHHHHHhhhhccccCCCC-hhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC
Confidence 45899999999983 44444433322 1 123 22222 2 557777776 9999999 8887655
No 334
>KOG1149|consensus
Probab=73.39 E-value=10 Score=47.90 Aligned_cols=130 Identities=16% Similarity=0.248 Sum_probs=77.4
Q ss_pred cCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Q psy15223 1606 DGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQ 1685 (2492)
Q Consensus 1606 ~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~ 1685 (2492)
-=-|-|+|.||+|-+++-..-=++|| ...|.-++.+=-+|-.- .+...-+++
T Consensus 37 RFAPSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq~R--------------------------~v~gs~e~i 88 (524)
T KOG1149|consen 37 RFAPSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQKR--------------------------LIRGSEEAI 88 (524)
T ss_pred eecCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEeccccccc--------------------------cccchHHHH
Confidence 34588899999999887666656665 34677777665555321 111112356
Q ss_pred HHHHHHhcccccccCee-c--cCChHHHHHHHHH----HHHHHhCCceEEe----------------Ccccc-cCCCCCc
Q psy15223 1686 KMDFMRLGILGEWDNSY-K--TMDFLNEANELRA----FGIIFKKGYVYHG----------------LKPVN-WCFDCKS 1741 (2492)
Q Consensus 1686 ~~~~~~lGi~~Dw~~~y-~--T~d~~y~~~~~~~----F~~L~~kGliyr~----------------~~~v~-wcp~~~t 1741 (2492)
-+.++-+|+ |||.-= . -.-|.-+..-..+ -.+|.+.|-+||- ...+. |+-.|.
T Consensus 89 ~~~L~w~nl--~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca- 165 (524)
T KOG1149|consen 89 YEDLKWANL--DWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCA- 165 (524)
T ss_pred HHHHHhcCC--CcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhc-
Confidence 667888888 776321 1 1122222222233 3467888988874 22233 555443
Q ss_pred ccccccccceeeecceEEEEEeccC
Q psy15223 1742 ALAEAEIEYKKKYDFSIYVGFSFSE 1766 (2492)
Q Consensus 1742 ~Lad~Evey~~~~~~~~yv~f~~~~ 1766 (2492)
-|+++|++.+..+++-.-|+|++..
T Consensus 166 ~ls~~ei~~~lakg~pf~iRFrl~~ 190 (524)
T KOG1149|consen 166 NLSDAEIKQKLAKGTPFTIRFRLPK 190 (524)
T ss_pred ccCHHHHHHHHhcCCCeeEEEecCC
Confidence 4788888766666666778898865
No 335
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=72.39 E-value=1.9 Score=44.06 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=29.0
Q ss_pred hhccCCccchhHHHHHhcc-------CeEEeCCCCcCCCcccceEee
Q psy15223 1335 NNLFEPCAMCAGAIIHVRL-------GEIIYGTPSFKTGACGSIINL 1374 (2492)
Q Consensus 1335 ~~v~~~c~mC~~a~~~~~i-------~~vv~g~~~~~~g~~g~~~~~ 1374 (2492)
.+..+||.||++-++++.- -+|||+..++ |++.++..+
T Consensus 81 ~vTlqcCkMCAalv~a~~d~pg~~~~~~vvY~~ed~--G~LardT~L 125 (136)
T PF14439_consen 81 LVTLQCCKMCAALVCAASDRPGRRVPIDVVYLNEDP--GSLARDTQL 125 (136)
T ss_pred EEechhHHHHHHHHHHHhhCcCCccceEEEEecCCC--CcchhHHHH
Confidence 4457999999999999887 7899987665 555555444
No 336
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=71.26 E-value=11 Score=43.94 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=67.2
Q ss_pred Ccceeeeeee--CCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhcc-CcccCCCeEEEEcCCChHh----HHHHHHHh-
Q psy15223 65 EVPVGAVLVK--NNLVISYGYNQQITRNDPTAHAEIIALRMASKLLN-NYRFSKNYKIYVTLEPCAM----CAGAIIHV- 136 (2492)
Q Consensus 65 ~~pvGaviv~--~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~-~~~l~~~~~ly~t~EPC~m----C~~ai~~~- 136 (2492)
+..+=|.-|+ +|.-+-.|+-..... ...|||+.-|........ .....-.-|.|+|..||+- |+..|+..
T Consensus 23 ~~t~Lcy~v~~~~~~~~~~g~~~n~~~--~~~HAE~~fl~~i~~~~~~~~~~~y~ITwy~SwSPC~~~~~~Ca~~i~~FL 100 (188)
T PF08210_consen 23 NKTYLCYEVEGRDGSWVQRGYFRNENC--KGRHAELCFLDWIRSWLLFDPDQIYRITWYLSWSPCPESDHCCAEKIAEFL 100 (188)
T ss_dssp SS-EEEEEEEEECTTEEEECECCSTTS--TSB-HHHHHHHHCCCGTB-TTTSEEEEEEEESSS--CC----HHHHHHHHH
T ss_pred CeEEEEEEEEEecCCCceEEEEECCCC--CCCCHHHHHHHHHHHhhccCCCceEEEEEEEecCCCcchhhHHHHHHHHHH
Confidence 4455666663 444555665433211 578999999988766542 2111113789999999999 99999874
Q ss_pred ------CCceEEEecCCCCC--Cc---cchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhc--cCcccccc
Q psy15223 137 ------RLGEIIYGTPSFKT--GA---CGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKR--RNFVKNKS 199 (2492)
Q Consensus 137 ------gi~rvv~g~~~~~~--~~---~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~--~~~~~~~~ 199 (2492)
+++=-+|.+.--.. .. .-.|+..|.++|+...+ . -..+-...+..|.... ++|...+.
T Consensus 101 ~~~~~~~v~L~I~~arLY~~~~~~~~~~~eGLr~L~~aGv~v~i--M---~~~df~~cw~~FV~~~~~~~f~pW~~ 171 (188)
T PF08210_consen 101 KKHLKPNVSLSIFAARLYYHWEPEPLWNQEGLRRLASAGVQVEI--M---SYKDFEYCWDNFVHNGENRPFQPWEK 171 (188)
T ss_dssp CCC--TTEEEEEEESS--STTSTT---HHHHHHHHHHCTEEEEE------SHHHHHHHHHCCETTT-S-S----TT
T ss_pred HHhCCCCCeEEEEEEeeeeecCCcchhHHHHHHHHHHcCCEEEE--c---CHHHHHHHHHhcccccCCCCCCccch
Confidence 34435555432221 11 23577888888776433 1 1334444555554333 44444443
No 337
>PLN02486 aminoacyl-tRNA ligase
Probab=68.20 E-value=27 Score=45.17 Aligned_cols=89 Identities=24% Similarity=0.195 Sum_probs=52.8
Q ss_pred CCCcEEEEcCCCCCCC-cccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHH
Q psy15223 1598 NRPKFILHDGPPYANG-DIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARA 1676 (2492)
Q Consensus 1598 ~~~~f~i~~~pPy~nG-~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~ 1676 (2492)
.+++|++..|. -||| .+|+||.. .-..+..++..-|..+....+ |. |... ..+.+.++++ +
T Consensus 70 ~~~~~~vYtG~-~PSg~~lHlGHlv---~~~~~~~lQ~~~~~~~~I~ia-D~-----e~~~----~~~~~~e~i~----~ 131 (383)
T PLN02486 70 KGEKFYLYTGR-GPSSEALHLGHLI---PFMFTKYLQDAFKVPLVIQLT-DD-----EKFL----WKNLSVEESQ----R 131 (383)
T ss_pred cCCCeEEEeCC-CCCCccccHHHHH---HHHHHHHHHHhCCCeEEEEec-CH-----HHHh----hcCCCHHHHH----H
Confidence 34678888886 5788 59999954 445555667777776666644 43 3322 2257777654 4
Q ss_pred HHHHHHHHHHHHHHHhcccccccCeeccCChHHH
Q psy15223 1677 LAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNE 1710 (2492)
Q Consensus 1677 ~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~ 1710 (2492)
++.+++..+ ..+|+ |-++.+.-.|-.+.
T Consensus 132 ~~~en~~~i----iA~G~--dp~kt~I~s~~~~~ 159 (383)
T PLN02486 132 LARENAKDI----IACGF--DVERTFIFSDFDYV 159 (383)
T ss_pred HHHHHHHHH----HHhCC--CCcceEEEeccHHH
Confidence 444444443 44776 55555544555544
No 338
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=66.31 E-value=5.2 Score=54.94 Aligned_cols=60 Identities=27% Similarity=0.269 Sum_probs=36.3
Q ss_pred CcCceeeecccchhhhhHHHHHHHHHH-hcCCccccEEEEeeeEEcCCC--ceeeecc-CCccCcch
Q psy15223 2119 IFPADLYLEGSDQHRGWFHSSLLTSII-LNKSAPYKALLTHGFVVDSKG--KKMSKSK-GNIIKPQK 2181 (2492)
Q Consensus 2119 ~~P~Dl~~~G~D~~r~wf~~~l~~~~~-l~~~~pfk~v~~hG~vld~~G--~KMSKS~-GNvi~p~~ 2181 (2492)
.+.+|+...|.||.. |..|..-.+ ..+..|-..++.|.++.+.+| .|||||. +|.|...|
T Consensus 173 ~l~adivpvG~DQ~q---h~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 173 FLKADICQLGLDQRK---VNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred ccCCCEEEeCccHHH---HHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 356889999999975 223333222 223222122345666666643 6999999 68997765
No 339
>KOG1149|consensus
Probab=65.73 E-value=18 Score=45.83 Aligned_cols=128 Identities=16% Similarity=0.252 Sum_probs=75.8
Q ss_pred CCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15223 458 PPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 537 (2492)
Q Consensus 458 PPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~~ 537 (2492)
-|-|+|.||+|-+++-..-=+++| ...|.-++.+=-+|-.- .....-+.+.+
T Consensus 39 APSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq~R--------------------------~v~gs~e~i~~ 90 (524)
T KOG1149|consen 39 APSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQKR--------------------------LIRGSEEAIYE 90 (524)
T ss_pred cCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEeccccccc--------------------------cccchHHHHHH
Confidence 467889999999887666666666 34677776655444211 11112236667
Q ss_pred HHHHccccccccCee-ec--CChHHHHH----HHHHHHHHHHcCCeEEeC----------------cccc-cCCCCCccc
Q psy15223 538 DFMRLGILGEWDNSY-KT--MDFLNEAN----ELRAFGIIFKKGYVYHGL----------------KPVN-WCFDCKSAL 593 (2492)
Q Consensus 538 ~~~~lGi~~Dw~~~y-~T--~d~~y~~~----~~~~f~~l~~kGliyr~~----------------~pv~-w~p~~~taL 593 (2492)
.++-.|+ |||..= .- .-|.-+.. -...-.+|.+.|-.||-. ..+. |+..|. -|
T Consensus 91 ~L~w~nl--~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca-~l 167 (524)
T KOG1149|consen 91 DLKWANL--DWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCA-NL 167 (524)
T ss_pred HHHhcCC--CcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhc-cc
Confidence 7777888 776421 10 11111111 122334678889888742 2233 444443 57
Q ss_pred ccccccccceeccEEEEEeecCC
Q psy15223 594 AEAEIEYKKKYDFSIYVGFSFSE 616 (2492)
Q Consensus 594 ae~Evey~~~~~~s~yv~f~~~~ 616 (2492)
+++|++....+++-.-|+|++..
T Consensus 168 s~~ei~~~lakg~pf~iRFrl~~ 190 (524)
T KOG1149|consen 168 SDAEIKQKLAKGTPFTIRFRLPK 190 (524)
T ss_pred CHHHHHHHHhcCCCeeEEEecCC
Confidence 88888877666666778888865
No 340
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=64.18 E-value=6 Score=54.40 Aligned_cols=60 Identities=25% Similarity=0.225 Sum_probs=35.9
Q ss_pred CcCeeeeecccccchhhHHHHHHHHHHh-cCCCCceEEEEeeEEEcCCC--ccccccC-CCccCcch
Q psy15223 969 IFPADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYKALLTHGFVVDSKG--KKMSKSK-GNIIKPQK 1031 (2492)
Q Consensus 969 ~~p~Dl~~~G~D~~rgwf~s~l~~~~~~-~~~~p~k~v~~hG~vld~~G--~KMSKS~-GN~i~p~~ 1031 (2492)
.+.+|+...|.||.. |..|..-.+- .+..|-..++.|.++.+.+| .|||||. +|.|...|
T Consensus 173 ~l~adivpvG~DQ~q---h~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 173 FLKADICQLGLDQRK---VNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred ccCCCEEEeCccHHH---HHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 356899999999985 2233322221 22221122344666666643 6999999 68997655
No 341
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=62.90 E-value=12 Score=40.84 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=38.1
Q ss_pred CCCcHHHHHHHHHHHhccCcccCC--CeEEEEcCCChHhHHHHHHHhC
Q psy15223 92 PTAHAEIIALRMASKLLNNYRFSK--NYKIYVTLEPCAMCAGAIIHVR 137 (2492)
Q Consensus 92 ~~~HaE~~ai~~a~~~~~~~~l~~--~~~ly~t~EPC~mC~~ai~~~g 137 (2492)
-...+|.-.|+..++.+....... ..+|||.+.||..|...|.+..
T Consensus 72 R~~DsE~KiL~~ia~~l~~~~~~~~G~i~l~te~~pC~SC~~vi~qF~ 119 (133)
T PF14424_consen 72 RNNDSEYKILEDIAKKLGDNPDPSGGTIDLFTELPPCESCSNVIEQFK 119 (133)
T ss_pred ccccHHHHHHHHHHHHhccccccCCceEEEEecCCcChhHHHHHHHHH
Confidence 356899999999999987655532 4789999999999999888764
No 342
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=60.65 E-value=27 Score=41.86 Aligned_cols=125 Identities=11% Similarity=0.175 Sum_probs=71.8
Q ss_pred HHHHHhccccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCC
Q psy15223 1399 LKSFFIKRRNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNIL 1478 (2492)
Q Consensus 1399 ~~~f~~~rr~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~ 1478 (2492)
+++..++|...-..++-.+-++..+--|++-|.-.||..|+.+..+... + .+..+ .+....++
T Consensus 9 i~~~l~~r~~~l~vvLd~V~~p~NlGAIiRta~AfGv~~V~~v~~~~~~---------------~-~~~~~-s~Ga~~wv 71 (229)
T PRK11081 9 ICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRM---------------R-TMGST-AAGSNSWV 71 (229)
T ss_pred HHHHHhcCCCCeEEEEeCCCCcchHHHHHHHHHHhCCCeEEEecCCCcc---------------c-hhhhh-cCCchheE
Confidence 4555555543334566668899999999999999999999876543320 0 11111 12223445
Q ss_pred CeeccCCChhHHHhcccc-cceEEeccCCcccccccccCCCCCceEEEecCCC-CCCHHHHHHHHH
Q psy15223 1479 PVLAPNIYFNNWLISKIS-CARILLSPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENLAYE 1542 (2492)
Q Consensus 1479 p~i~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEG-G~s~~E~~~~~~ 1542 (2492)
| +....++.+++..... ...++...-..... .+...+-+++++|++|.|| |.|++.+++...
T Consensus 72 ~-i~~~~~~~~~i~~lk~~g~~i~at~~~~~a~-~l~~~d~~~p~alV~GnE~~GlS~e~l~~~D~ 135 (229)
T PRK11081 72 Q-VKTHRTIGDAVAHLKGQGMQILATHLSDTAV-DFREIDYTRPTCILMGQEKTGISQEALALADQ 135 (229)
T ss_pred E-EEEeCCHHHHHHHHHhCCCEEEEEeCCCCCc-cHhHhcccCCeEEEECCCCCCCCHHHHhcCCC
Confidence 4 4444567776654321 22333322111111 1112234578999999998 899887776543
No 343
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ]. The Pet56 protein of Saccharomyces cerevisiae has been shown to be required for ribose methylation at a universally conserved nucleotide in the peptidyl transferase centre of the mitochondrial large ribosomal RNA (21S rRNA). Cells reduced in this activity were deficient in formation of functional large subunits of the mitochondrial ribosome. The Pet56 protein catalyzes the site-specific formation of 2'-O-methylguanosine on in vitro transcripts of both mitochondrial 21S rRNA and E. coli 23S rRNA providing evidence for an essential modified nucleotide in rRNA [].; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 3N4J_A 3N4K_A 1IPA_A 3ONP_A 3NK6_A 3NK7_A 3IC6_A 1GZ0_D 1MXI_A 1J85_A ....
Probab=56.17 E-value=16 Score=40.53 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=66.4
Q ss_pred EecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCChhHHHhcc
Q psy15223 1415 QALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISK 1494 (2492)
Q Consensus 1415 ~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~~~~l~~~ 1494 (2492)
-.+-.+.-+=-++|-|.-+|++.|+.+..... .+... -+..++..+ ..++| +....++.+++...
T Consensus 7 ~~~~~p~NlG~i~Rta~afG~~~v~l~~~~~~--~~~~~-----------~~~r~s~g~-~~~~~-~~~~~~~~~~l~~~ 71 (142)
T PF00588_consen 7 DNVQDPGNLGAIIRTAAAFGVDGVILVGPRCA--DPYNP-----------KVLRASAGA-HEHLP-IRRVDDLEEALKDL 71 (142)
T ss_dssp ES-SSHHHHHHHHHHHHHTTESEEEEESSSSS--TTTSH-----------HHHHHTTTG-HHCSH-EEEESSHHHHHHHH
T ss_pred eCCCCcCcHHHHHHHHHHhCCchhheeccccc--ccccc-----------ccccccCCh-hhhhh-eeeeehhhhhcccc
Confidence 34455567778999999999999988654433 11111 133344444 33577 77778899988764
Q ss_pred ccc-ceEEeccCCcccccccccCCCCCceEEEecCC-CCCCHHHHHHHH
Q psy15223 1495 ISC-ARILLSPRGRKKLSCWANNQSPQEVELLIGPE-GGFTEKEENLAY 1541 (2492)
Q Consensus 1495 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPE-GG~s~~E~~~~~ 1541 (2492)
... ..++....+...+.. ..-+++++|++|.| .|+|+++.+...
T Consensus 72 ~~~g~~i~~~~~~~~~~~~---~~~~~~~~lv~G~E~~Gls~~~~~~~d 117 (142)
T PF00588_consen 72 KENGYTIVATSPGATPLYE---LDFPKKVALVFGNESRGLSEEVLELCD 117 (142)
T ss_dssp HHTTEEEEEESTTSCEGGG---SHTTSSEEEEEEBTTTBS-HHHHHTSS
T ss_pred cccccccceeeeccccccc---cccccceEEEEcCcCCCCCcccccccc
Confidence 433 223333223322222 23357999999999 799999877655
No 344
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=54.44 E-value=12 Score=40.61 Aligned_cols=47 Identities=28% Similarity=0.297 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHHHHhccC-cccCCCeEEE-------------EcCCChHhHHHHHHHhCC
Q psy15223 92 PTAHAEIIALRMASKLLNN-YRFSKNYKIY-------------VTLEPCAMCAGAIIHVRL 138 (2492)
Q Consensus 92 ~~~HaE~~ai~~a~~~~~~-~~l~~~~~ly-------------~t~EPC~mC~~ai~~~gi 138 (2492)
+-.|||+.||+++...... ....++..++ .-..||+.|+..+.+.||
T Consensus 65 ~G~cAEv~avn~~L~~~d~~~~~~~~a~~~~~~ir~~~~~~~G~~~~pC~nC~~~l~~~~v 125 (125)
T PF14431_consen 65 AGRCAEVIAVNDALWARDAARRSLEGAKITTRRIREPGDPEHGKYAPPCRNCAALLKHFGV 125 (125)
T ss_pred CCcccHHHHHHHHHHhhhccccccccccceeeeeecccCCCCCCCCCCCchHHHHHhhcCC
Confidence 3569999999999876221 0001122221 123799999999999886
No 345
>COG1901 Uncharacterized conserved protein [Function unknown]
Probab=53.98 E-value=47 Score=37.78 Aligned_cols=89 Identities=20% Similarity=0.183 Sum_probs=62.6
Q ss_pred hCCCCcceecc-CCchhHHHhhc-ccccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeec
Q psy15223 341 SGRNILPVLAP-NIYFNNWLISK-ISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSL 418 (2492)
Q Consensus 341 s~r~~~p~i~~-~~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsL 418 (2492)
..|...|-|.. -..|++++... ....+++++++|........ ..+..+++|---|+|+++...+...+...|||
T Consensus 99 ~~~~~~pGi~V~~~~~e~ll~~l~~~~~ly~L~E~G~DI~~v~~----~~np~FIlGDH~g~t~e~~k~L~r~~~~~ISl 174 (197)
T COG1901 99 QTREVTPGIYVRNGGFEALLAELAEGRSLYYLHEDGRDISEVDL----IPNPVFILGDHIGLTEEDEKLLERHAAKKISL 174 (197)
T ss_pred ceeecCCCEEEecCCHHHHHHHHhccCcEEEEccCCccHhhccc----CCCceEEeeCCCCCCHHHHHHHHHhhCceeEe
Confidence 33444555554 55667766543 22456788888775332211 24567889999999999999999988888999
Q ss_pred Ccceeeccccchhhe
Q psy15223 419 GKRILRTETASLVAL 433 (2492)
Q Consensus 419 g~~ILr~eta~~~~~ 433 (2492)
||.-|=|+-+..++.
T Consensus 175 GP~~lha~hcit~~h 189 (197)
T COG1901 175 GPLSLHADHCITLLH 189 (197)
T ss_pred CchHHHHHHHHHHHH
Confidence 999998887776543
No 346
>PLN02402 cytidine deaminase
Probab=51.21 E-value=12 Score=46.15 Aligned_cols=44 Identities=18% Similarity=0.113 Sum_probs=38.0
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhc
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLL 108 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~ 108 (2492)
.+.||||+|+ +||+|+ .|.|-.....+++.+||.+||-.+....
T Consensus 211 S~f~VGaal~~~dG~i~-~G~nvENAay~~slcAer~Ai~~~v~~G 255 (303)
T PLN02402 211 SNCPSGVALMDCEGKVY-RGSYMESAAYNPSMGPVQAALVAYVAGG 255 (303)
T ss_pred cCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHcC
Confidence 4789999999 578866 9999988888999999999999887653
No 347
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=50.86 E-value=2e+02 Score=30.69 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhcccc--CChHHHHHHHHHHHHHHHHHH
Q psy15223 1099 EIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTK--KNSHARRSAQTSIWHINQSLL 1176 (2492)
Q Consensus 1099 ~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~--~~~~~r~sa~~~L~~il~~l~ 1176 (2492)
+.++-++..+..+.+.+..++.+.+++.++..+.+++ ..+++|| +.+ +...++ .-...|......+..++..++
T Consensus 36 ~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~fy-~~v--~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~ 111 (122)
T smart00836 36 PEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLA-SAFHSFY-NKC--RVLGEENPELRAARLALLKAVRQVLANGL 111 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH-HHHHHHH-ccC--cccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888999999999999999999998 5677776 322 222221 012345555566666666666
Q ss_pred HHhcc
Q psy15223 1177 RLISP 1181 (2492)
Q Consensus 1177 ~lLaP 1181 (2492)
.+|..
T Consensus 112 ~llgi 116 (122)
T smart00836 112 RLLGI 116 (122)
T ss_pred HHcCC
Confidence 66643
No 348
>KOG2623|consensus
Probab=48.09 E-value=17 Score=45.36 Aligned_cols=60 Identities=27% Similarity=0.302 Sum_probs=37.5
Q ss_pred cCceeeecccchhhhhHHHH-HHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcch
Q psy15223 2120 FPADLYLEGSDQHRGWFHSS-LLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQK 2181 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~-l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ 2181 (2492)
|-+.+.++|.||.- .+.+- =+....+.. .-+.-=++-.++.+..|.|+-||-||.||.+-
T Consensus 226 ~g~~~QlGGsDQwG-NitaG~dlI~ki~~~-~~~vfGlT~PLlTsstG~KlGKSaGnAvWLdp 286 (467)
T KOG2623|consen 226 YGCRFQLGGSDQWG-NITAGTDLIRKIMPI-QAFVFGLTFPLLTSSTGAKLGKSAGNAVWLDP 286 (467)
T ss_pred cCeeEEeccccccc-ccchHHHHHHHhccc-ccceeeeeeeeEecCcchhhccCCCceEEecC
Confidence 56889999999973 21111 111111111 11222355567788999999999999999764
No 349
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ]. The Pet56 protein of Saccharomyces cerevisiae has been shown to be required for ribose methylation at a universally conserved nucleotide in the peptidyl transferase centre of the mitochondrial large ribosomal RNA (21S rRNA). Cells reduced in this activity were deficient in formation of functional large subunits of the mitochondrial ribosome. The Pet56 protein catalyzes the site-specific formation of 2'-O-methylguanosine on in vitro transcripts of both mitochondrial 21S rRNA and E. coli 23S rRNA providing evidence for an essential modified nucleotide in rRNA [].; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 3N4J_A 3N4K_A 1IPA_A 3ONP_A 3NK6_A 3NK7_A 3IC6_A 1GZ0_D 1MXI_A 1J85_A ....
Probab=47.21 E-value=36 Score=37.67 Aligned_cols=110 Identities=17% Similarity=0.234 Sum_probs=67.3
Q ss_pred EEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHHh
Q psy15223 281 LVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLI 360 (2492)
Q Consensus 281 L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l~ 360 (2492)
++-.+-.+..+--++|-|.-+|++.++.+..... ... ..-+..++..+ ..++| +....++.+++.
T Consensus 5 vl~~~~~p~NlG~i~Rta~afG~~~v~l~~~~~~--~~~-----------~~~~~r~s~g~-~~~~~-~~~~~~~~~~l~ 69 (142)
T PF00588_consen 5 VLDNVQDPGNLGAIIRTAAAFGVDGVILVGPRCA--DPY-----------NPKVLRASAGA-HEHLP-IRRVDDLEEALK 69 (142)
T ss_dssp EEES-SSHHHHHHHHHHHHHTTESEEEEESSSSS--TTT-----------SHHHHHHTTTG-HHCSH-EEEESSHHHHHH
T ss_pred EEeCCCCcCcHHHHHHHHHHhCCchhheeccccc--ccc-----------ccccccccCCh-hhhhh-eeeeehhhhhcc
Confidence 3445667789999999999999999988654432 111 11244455554 33566 677788888876
Q ss_pred hcccc-cEEEeccCCcccccccccCCCCCceEEEeCCC-CCCCHHHHHHH
Q psy15223 361 SKISC-ARILLSPRGRKKLSCWANNQSPQEVELLIGPE-GGFTEKEENLA 408 (2492)
Q Consensus 361 ~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPE-GGfs~~E~~~~ 408 (2492)
..... ..++....+...+..+ .-++++.+++|.| .|.++++++..
T Consensus 70 ~~~~~g~~i~~~~~~~~~~~~~---~~~~~~~lv~G~E~~Gls~~~~~~~ 116 (142)
T PF00588_consen 70 DLKENGYTIVATSPGATPLYEL---DFPKKVALVFGNESRGLSEEVLELC 116 (142)
T ss_dssp HHHHTTEEEEEESTTSCEGGGS---HTTSSEEEEEEBTTTBS-HHHHHTS
T ss_pred cccccccccceeeecccccccc---ccccceEEEEcCcCCCCCccccccc
Confidence 54322 2233322222222222 2347899999999 69999987653
No 350
>KOG2623|consensus
Probab=44.90 E-value=24 Score=44.10 Aligned_cols=62 Identities=26% Similarity=0.266 Sum_probs=38.9
Q ss_pred CcCeeeeecccccchhhHHHH-HHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchh
Q psy15223 969 IFPADLYLEGSDQHRGWFHSS-LLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKL 1032 (2492)
Q Consensus 969 ~~p~Dl~~~G~D~~rgwf~s~-l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~i 1032 (2492)
.+..-+.++|+||.- ...+- -+....... .-+.-=++--.+.+..|.|+-||-||.||.+--
T Consensus 225 ~~g~~~QlGGsDQwG-NitaG~dlI~ki~~~-~~~vfGlT~PLlTsstG~KlGKSaGnAvWLdp~ 287 (467)
T KOG2623|consen 225 NYGCRFQLGGSDQWG-NITAGTDLIRKIMPI-QAFVFGLTFPLLTSSTGAKLGKSAGNAVWLDPS 287 (467)
T ss_pred hcCeeEEeccccccc-ccchHHHHHHHhccc-ccceeeeeeeeEecCcchhhccCCCceEEecCc
Confidence 356889999999983 22111 112222221 122233455667889999999999999987643
No 351
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=42.00 E-value=3.4e+02 Score=28.93 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccC--ChHHHHHHHHHHHHHHHHH
Q psy15223 2248 VEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK--NSHARRSAQTSIWHINQSL 2325 (2492)
Q Consensus 2248 ~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~--~~~~r~~~~~~l~~il~~l 2325 (2492)
.+.++.++..+..+.+.+..++.+.+++.++..+.++. ..++++| +.. +...... -...|......+..++..+
T Consensus 35 ~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~fy-~~v--~V~~~~~~~~~~~RL~Ll~~~~~~l~~~ 110 (122)
T smart00836 35 EPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLA-SAFHSFY-NKC--RVLGEENPELRAARLALLKAVRQVLANG 110 (122)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH-HHHHHHH-ccC--cccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35577788888899999999999999999999999988 4676666 311 2222210 1123444445555555555
Q ss_pred HHHHh
Q psy15223 2326 LRLIS 2330 (2492)
Q Consensus 2326 ~~lLa 2330 (2492)
+.+|.
T Consensus 111 ~~llg 115 (122)
T smart00836 111 LRLLG 115 (122)
T ss_pred HHHcC
Confidence 55553
No 352
>PRK10864 putative methyltransferase; Provisional
Probab=41.70 E-value=1.4e+02 Score=38.15 Aligned_cols=110 Identities=14% Similarity=0.169 Sum_probs=65.9
Q ss_pred eEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCChhHH
Q psy15223 1411 KNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNW 1490 (2492)
Q Consensus 1411 ~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~~~~ 1490 (2492)
+.++-.+-.+..+=-|++-|.-+||+.|+.. +.+.. + .. +.++ +++-+ -.++|.+ ...++.++
T Consensus 200 vlvLd~I~DP~NlGaIiRTA~afGv~~Vil~--~~~~~-~-~~----------kvvR-aS~Ga-~~~v~i~-~~~nl~~~ 262 (346)
T PRK10864 200 VLALEDVGNPHNLGGIMRSCAHFGVKGVVVQ--DAALL-E-SG----------AAIR-TAEGG-AEHVQPI-TGDSFVDV 262 (346)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhCCCEEEEC--CCCCC-C-ch----------hHHH-HhcCh-hhcceEE-EeCCHHHH
Confidence 4555578899999999999999999999764 33311 1 11 1222 33222 3456654 34567777
Q ss_pred Hhcccc-cceEEec-cCCcccccccccCCCCCceEEEecCCC-CCCHHHHHHH
Q psy15223 1491 LISKIS-CARILLS-PRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENLA 1540 (2492)
Q Consensus 1491 l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~iGPEG-G~s~~E~~~~ 1540 (2492)
|..... ...++.. ..+...+ .....+++++|++|.|| |+|+..++..
T Consensus 263 L~~lk~~G~~Iv~t~~~~~~~l---~~~~~~~k~aLV~GnE~~GLs~~vl~~~ 312 (346)
T PRK10864 263 LDDFRQAGYTIVTTSSHKGTPL---FKASLPAKMVLVLGQEYDGLSDAARQQG 312 (346)
T ss_pred HHHHHHCCCEEEEEeCCCCcch---hhcccCCCeEEEECCCCCCCCHHHHHhC
Confidence 654322 2233332 2222222 22234678999999999 8999866664
No 353
>TIGR00185 rRNA_methyl_2 rRNA methylase, putative, group 2. this is part of the trmH (spoU) family of rRNA methylases
Probab=40.23 E-value=1.6e+02 Score=33.12 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=59.9
Q ss_pred EEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCC-CCCCeeccCCChhHHHh
Q psy15223 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGR-NILPVLAPNIYFNNWLI 1492 (2492)
Q Consensus 1414 ~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r-~~~p~i~~~~~~~~~l~ 1492 (2492)
+..+-.+..+=.++|-|.-+|++.+ .+ +.++. .+... + +.+ |+ ++. ..+|-. ...++.++++
T Consensus 6 L~~v~dP~NlG~iiRta~afGv~~v-i~-~~~~~-~~~~~-------~---~~r-a~--~~~~~~~~~~-~~~~~~~~l~ 68 (153)
T TIGR00185 6 LYEPEIPPNTGNIARTCAATGTRLH-LI-EPLGF-FLDDK-------R---LKR-AG--LDYWEFVQLF-YHKSWEEFLE 68 (153)
T ss_pred EcCCCCCChHHHHHHHHHHhCCEEE-EE-CCCCC-CCccH-------H---HHh-hc--cchHhcCCeE-EeCCHHHHHH
Confidence 3445567788899999999999655 33 33432 12211 1 111 21 111 234443 3467888776
Q ss_pred cccccceEEeccCCcccccccccCCCCCceEEEecCCC-CCCHHHHHHH
Q psy15223 1493 SKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENLA 1540 (2492)
Q Consensus 1493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEG-G~s~~E~~~~ 1540 (2492)
.......+.++..+...+... ..+.+.+|++|.|| |.|++..+..
T Consensus 69 ~l~~~gv~~~~~~~~~~~~~~---~~~~~~alv~GnE~~Gls~~~l~~~ 114 (153)
T TIGR00185 69 AEKPQKLFALTKKGTPAHSQV---TYKLGDYLMFGPETRGLPQSILDNM 114 (153)
T ss_pred hCcCCCEEEEeCCCCCcceee---ccCCCCEEEECCCCCCCCHHHHhhC
Confidence 543323333443333222211 22446689999999 9999988776
No 354
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=37.14 E-value=1.1e+02 Score=37.40 Aligned_cols=123 Identities=11% Similarity=0.136 Sum_probs=68.5
Q ss_pred HHHHHhccccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCC
Q psy15223 1399 LKSFFIKRRNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNIL 1478 (2492)
Q Consensus 1399 ~~~f~~~rr~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~ 1478 (2492)
+.++++++..+-+-++-.+-.+..+--++|-|.-+|++.|+. +.++...+.. + .++ ++ .....++
T Consensus 85 ~~~~~~~~~~~~~lvLd~v~dp~NlGai~Rta~a~G~~~vi~--~~~~~~~~~~-~----------~~r-~s-~Ga~~~l 149 (244)
T PRK11181 85 LPDLLASLEQPFLLILDGVTDPHNLGACLRSADAAGVHAVIV--PKDRSAQLNA-T----------AKK-VA-CGAAETV 149 (244)
T ss_pred HHHHHhcCCCCEEEEEcCCCCcchHHHHHHHHHHcCCCEEEE--CCCCCCCCCC-c----------eEE-ec-CCHHHcC
Confidence 334444333333455557889999999999999999999964 4444333322 1 111 11 1122356
Q ss_pred CeeccCCChhHHHhcccc-cceEEe-ccCCcccccccccCCCCCceEEEecCCC-CCCHHHHHHH
Q psy15223 1479 PVLAPNIYFNNWLISKIS-CARILL-SPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENLA 1540 (2492)
Q Consensus 1479 p~i~~~~~~~~~l~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~iGPEG-G~s~~E~~~~ 1540 (2492)
|-.. ..++.+++..... ...++. +.++...+. .....++++|++|.|| |+|++..+..
T Consensus 150 ~~~~-~~~~~~~l~~l~~~g~~i~~t~~~~~~~~~---~~~~~~~~alv~G~E~~Gls~~~~~~~ 210 (244)
T PRK11181 150 PLIR-VTNLARTMRMLQEKNIWIVGTAGEADHTLY---QSKLTGPLALVMGAEGEGMRRLTREHC 210 (244)
T ss_pred eEEE-cCCHHHHHHHHHHCCCEEEEEeCCCCcchh---hcCCCCCEEEEECCCCCCcCHHHHHhC
Confidence 6543 3467776654322 222333 222221111 1223578999999998 8998766554
No 355
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase
Probab=34.57 E-value=22 Score=37.78 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=40.2
Q ss_pred CCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHh---HHHHHHHh--CCceEEEecCCCC
Q psy15223 93 TAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAM---CAGAIIHV--RLGEIIYGTPSFK 149 (2492)
Q Consensus 93 ~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~m---C~~ai~~~--gi~rvv~g~~~~~ 149 (2492)
..|+|..++..+.+..-... +=..||+=+|||.. |+..|-.. +. +|.|....+.
T Consensus 45 ~~H~E~~il~~l~~~~v~p~--~I~elYtEl~PC~~~~~C~~~l~~~~p~a-~vt~s~~yg~ 103 (118)
T PF14440_consen 45 KPHSERAILHQLRAHGVPPE--QITELYTELEPCELGGYCARMLRNSLPGA-EVTYSFDYGT 103 (118)
T ss_pred CCChHHHHHHHHHHcCCcHH--HHHHHHHhcccccccchHHHHHHhhCCCC-eEEEeccCCC
Confidence 78999999999886432211 12469999999988 99999886 55 6888776543
No 356
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=32.38 E-value=1.4e+02 Score=32.37 Aligned_cols=106 Identities=17% Similarity=0.131 Sum_probs=55.6
Q ss_pred CCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCChhHHHhccccc
Q psy15223 1418 PENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISKISC 1497 (2492)
Q Consensus 1418 ~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~~~~l~~~~~~ 1497 (2492)
.-..|+..+-+-+--+|++.++.....=|-.+. -.-...|++. |- | .|- -....|+++++--.+.
T Consensus 11 ~S~~rv~e~ariaygfg~k~lV~tka~g~AAQs-------GIp~~~kla~---k~-G---~~v-lvf~dL~DAlevL~P~ 75 (147)
T COG4080 11 SSVQRVLEFARIAYGFGAKRLVLTKAKGSAAQS-------GIPEVLKLAF---KL-G---KPV-LVFPDLDDALEVLRPD 75 (147)
T ss_pred CchHHHHHHHHHHcccCccEEEEEecccHhhhh-------ccHHHHHHHH---Hh-C---CcE-EEehhHHHHHHhcCCc
Confidence 345778888888999999998765544331110 0111112222 11 1 222 2233567776654444
Q ss_pred ceEEec--cCCcccccccccCCCCCceEEEecCCCCCCHHHHHH
Q psy15223 1498 ARILLS--PRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENL 1539 (2492)
Q Consensus 1498 ~~~~~~--~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~ 1539 (2492)
..++.. .+++..+......+ ..-..++.|.|+||++.|.++
T Consensus 76 v~ll~~~~~~~ek~~dp~e~ie-~~vliVf~ga~~gl~k~El~l 118 (147)
T COG4080 76 VTLLVGSASEGEKKLDPNEKIE-GRVLIVFSGAEPGLTKRELEL 118 (147)
T ss_pred eEEEecCcccccccCCcccccc-ceEEEEEecCCCCcChhhccc
Confidence 433331 13333333222221 234567889999999999864
No 357
>PLN02886 aminoacyl-tRNA ligase
Probab=32.24 E-value=36 Score=43.95 Aligned_cols=15 Identities=40% Similarity=0.663 Sum_probs=12.2
Q ss_pred CcCeeeeecccccch
Q psy15223 969 IFPADLYLEGSDQHR 983 (2492)
Q Consensus 969 ~~p~Dl~~~G~D~~r 983 (2492)
.|-+|+...|.||..
T Consensus 182 l~~a~~VPVG~DQ~q 196 (389)
T PLN02886 182 LYQADLVPVGEDQKQ 196 (389)
T ss_pred hcCCCeEEEccchHH
Confidence 356889999999984
No 358
>KOG2144|consensus
Probab=31.90 E-value=29 Score=41.66 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=34.3
Q ss_pred CcCceeeecccchhh-hhHHHHHHHHHHhcCCccccEEEEeeeEEcCC-CceeeeccCCc
Q psy15223 2119 IFPADLYLEGSDQHR-GWFHSSLLTSIILNKSAPYKALLTHGFVVDSK-GKKMSKSKGNI 2176 (2492)
Q Consensus 2119 ~~P~Dl~~~G~D~~r-~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~-G~KMSKS~GNv 2176 (2492)
..-+|..++|.||-. +-+..-.++.+... -+-+++|.|+-... |.|||+|--|.
T Consensus 175 ~L~vD~qfgGvDQRKIf~~A~eylp~l~yk----KrihLmnpMvPGL~q~~KMSsSd~~S 230 (360)
T KOG2144|consen 175 YLEVDAQFGGVDQRKIFVLAEEYLPDLGYK----KRIHLMNPMVPGLAQGEKMSSSDPLS 230 (360)
T ss_pred HHhhhHHhcCccHHHHHHHHHHhhhhhCcc----cceeecCCCCccccccCccccCCccc
Confidence 345899999999964 11222222222211 13478888887665 99999997653
No 359
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=31.61 E-value=3.3e+02 Score=29.78 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=55.7
Q ss_pred CCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHHhhcccc
Q psy15223 286 PENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISKISC 365 (2492)
Q Consensus 286 ~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l~~~~~~ 365 (2492)
.-..|+..+-+-|--+|+.+++.....=| ..+.-.-..+|++.+. -. ++.....|+|+++-..+.
T Consensus 11 ~S~~rv~e~ariaygfg~k~lV~tka~g~-------AAQsGIp~~~kla~k~-------G~-~vlvf~dL~DAlevL~P~ 75 (147)
T COG4080 11 SSVQRVLEFARIAYGFGAKRLVLTKAKGS-------AAQSGIPEVLKLAFKL-------GK-PVLVFPDLDDALEVLRPD 75 (147)
T ss_pred CchHHHHHHHHHHcccCccEEEEEecccH-------hhhhccHHHHHHHHHh-------CC-cEEEehhHHHHHHhcCCc
Confidence 34578999999999999999876543322 1111111122222221 12 334566788887755544
Q ss_pred cEEEec-c-CCcccccccccCCCCCceE-EEeCCCCCCCHHHHH
Q psy15223 366 ARILLS-P-RGRKKLSCWANNQSPQEVE-LLIGPEGGFTEKEEN 406 (2492)
Q Consensus 366 ~~~l~~-~-~~~~~~~~~~~~~~~~~v~-~~iGPEGGfs~~E~~ 406 (2492)
..+++. . ++.+.+.... . ...++. ++-|.|+|||+.|++
T Consensus 76 v~ll~~~~~~~ek~~dp~e-~-ie~~vliVf~ga~~gl~k~El~ 117 (147)
T COG4080 76 VTLLVGSASEGEKKLDPNE-K-IEGRVLIVFSGAEPGLTKRELE 117 (147)
T ss_pred eEEEecCcccccccCCccc-c-ccceEEEEEecCCCCcChhhcc
Confidence 333331 1 2233322211 1 112444 556999999999976
No 360
>TIGR00185 rRNA_methyl_2 rRNA methylase, putative, group 2. this is part of the trmH (spoU) family of rRNA methylases
Probab=31.20 E-value=2.4e+02 Score=31.73 Aligned_cols=106 Identities=14% Similarity=0.073 Sum_probs=58.5
Q ss_pred ecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHHhhcc
Q psy15223 284 ALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISKI 363 (2492)
Q Consensus 284 al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l~~~~ 363 (2492)
.+-.+..+--|+|-|.-+|++.++. ..++. .+.. ++ ++.|+ .+....-.+....++.++++...
T Consensus 8 ~v~dP~NlG~iiRta~afGv~~vi~--~~~~~-~~~~----~~-------~~ra~--~~~~~~~~~~~~~~~~~~l~~l~ 71 (153)
T TIGR00185 8 EPEIPPNTGNIARTCAATGTRLHLI--EPLGF-FLDD----KR-------LKRAG--LDYWEFVQLFYHKSWEEFLEAEK 71 (153)
T ss_pred CCCCCChHHHHHHHHHHhCCEEEEE--CCCCC-CCcc----HH-------HHhhc--cchHhcCCeEEeCCHHHHHHhCc
Confidence 4557789999999999999965533 23332 1211 11 11221 11211223334578888876543
Q ss_pred cccEEEeccCCcccccccccCCCCCceEEEeCCCC-CCCHHHHHHH
Q psy15223 364 SCARILLSPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENLA 408 (2492)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEG-Gfs~~E~~~~ 408 (2492)
....+.++.++...+.... .+.+..+++|.|| |.+++.++..
T Consensus 72 ~~gv~~~~~~~~~~~~~~~---~~~~~alv~GnE~~Gls~~~l~~~ 114 (153)
T TIGR00185 72 PQKLFALTKKGTPAHSQVT---YKLGDYLMFGPETRGLPQSILDNM 114 (153)
T ss_pred CCCEEEEeCCCCCcceeec---cCCCCEEEECCCCCCCCHHHHhhC
Confidence 3233333433322222211 1234589999999 9999988764
No 361
>PRK10358 putative rRNA methylase; Provisional
Probab=30.38 E-value=3.7e+02 Score=30.46 Aligned_cols=107 Identities=13% Similarity=0.099 Sum_probs=61.2
Q ss_pred EEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCC-eeccCCChhHHHh
Q psy15223 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILP-VLAPNIYFNNWLI 1492 (2492)
Q Consensus 1414 ~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p-~i~~~~~~~~~l~ 1492 (2492)
+..+-.|.-+=.++|-|.-.|++ .+.+ +.++. .+.. |.+++|. + -.+++ .+....++.+++.
T Consensus 6 L~~~~dPgNlGti~Rta~a~G~~-~viv-~~~~d-~~~~-----------k~~raag-~--~~~~~~~~~~~~~l~~~l~ 68 (157)
T PRK10358 6 LFEPEIPPNTGNIIRLCANTGFR-LHII-EPMGF-AWDD-----------KRLRRAG-L--DYHEFTAVTRHHDYAAFLE 68 (157)
T ss_pred EeCCCCcChHHHHHHHHHHhCCE-EEEE-CCCCC-CCCh-----------HHHHhcc-c--ccccceeeEEcCCHHHHHH
Confidence 44566778899999999999995 5555 44552 2322 1233221 1 22233 2444578888887
Q ss_pred cccccceEEeccCCcccccccccCCCCCceEEEecCCC-CCCHHHHHHH
Q psy15223 1493 SKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENLA 1540 (2492)
Q Consensus 1493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEG-G~s~~E~~~~ 1540 (2492)
.......+..+..+....... ....+.+|++|.|| |+|++..+..
T Consensus 69 ~~~~~~v~~~~~~~~~~~~~~---~~~~~~~lvfGnE~~GLs~~~~~~~ 114 (157)
T PRK10358 69 AENPQRLFALTTKGTPAHSAV---SYQDGDYLMFGPETRGLPASILDAL 114 (157)
T ss_pred hCCCceEEEEeCCCCCCcccc---ccCCCcEEEECCCCCCCCHHHHhcC
Confidence 432222233344433322211 12345789999998 8999877763
No 362
>PLN02886 aminoacyl-tRNA ligase
Probab=30.00 E-value=39 Score=43.63 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=11.7
Q ss_pred cCceeeecccchhh
Q psy15223 2120 FPADLYLEGSDQHR 2133 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r 2133 (2492)
|-+|+...|.||..
T Consensus 183 ~~a~~VPVG~DQ~q 196 (389)
T PLN02886 183 YQADLVPVGEDQKQ 196 (389)
T ss_pred cCCCeEEEccchHH
Confidence 55789999999984
No 363
>KOG3127|consensus
Probab=28.30 E-value=25 Score=40.83 Aligned_cols=26 Identities=31% Similarity=0.645 Sum_probs=23.9
Q ss_pred ccCCccchhHHHHHhccCeEEeCCCC
Q psy15223 1337 LFEPCAMCAGAIIHVRLGEIIYGTPS 1362 (2492)
Q Consensus 1337 v~~~c~mC~~a~~~~~i~~vv~g~~~ 1362 (2492)
..-||--|+--|.++||++|||+...
T Consensus 158 tl~PC~~Ca~liiq~GIkeV~~~~~~ 183 (230)
T KOG3127|consen 158 TLCPCNECAKLIIQAGIKEVYYSSSY 183 (230)
T ss_pred eecchHHHHHHHHHhhhhheeecccc
Confidence 35999999999999999999999874
No 364
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=27.57 E-value=1.8e+02 Score=35.11 Aligned_cols=109 Identities=12% Similarity=0.163 Sum_probs=64.0
Q ss_pred eeEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHH
Q psy15223 279 ITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNW 358 (2492)
Q Consensus 279 i~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~ 358 (2492)
+.++-.+-++..+--|++-|.-.||..|+.+..+... + ....++ +....++ .+....++.++
T Consensus 21 ~vvLd~V~~p~NlGAIiRta~AfGv~~V~~v~~~~~~---------------~-~~~~~s-~Ga~~wv-~i~~~~~~~~~ 82 (229)
T PRK11081 21 TVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRM---------------R-TMGSTA-AGSNSWV-QVKTHRTIGDA 82 (229)
T ss_pred EEEEeCCCCcchHHHHHHHHHHhCCCeEEEecCCCcc---------------c-hhhhhc-CCchheE-EEEEeCCHHHH
Confidence 4455588899999999999999999999776433210 0 111122 2223444 44555677777
Q ss_pred Hhhcc-cccEEEe-ccCC-cccccccccCCCCCceEEEeCCCC-CCCHHHHHHH
Q psy15223 359 LISKI-SCARILL-SPRG-RKKLSCWANNQSPQEVELLIGPEG-GFTEKEENLA 408 (2492)
Q Consensus 359 l~~~~-~~~~~l~-~~~~-~~~~~~~~~~~~~~~v~~~iGPEG-Gfs~~E~~~~ 408 (2492)
+.... .+..++. +... ...+.. ..-++++.+++|.|| |.|++.++..
T Consensus 83 i~~lk~~g~~i~at~~~~~a~~l~~---~d~~~p~alV~GnE~~GlS~e~l~~~ 133 (229)
T PRK11081 83 VAHLKGQGMQILATHLSDTAVDFRE---IDYTRPTCILMGQEKTGISQEALALA 133 (229)
T ss_pred HHHHHhCCCEEEEEeCCCCCccHhH---hcccCCeEEEECCCCCCCCHHHHhcC
Confidence 65432 2223333 2211 111221 223467899999998 8898877653
No 365
>PRK10864 putative methyltransferase; Provisional
Probab=26.24 E-value=2.4e+02 Score=36.20 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=65.3
Q ss_pred eeEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHH
Q psy15223 279 ITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNW 358 (2492)
Q Consensus 279 i~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~ 358 (2492)
+.++-.+-.+..+--|++-|.-+||+.|+... .+.. +. . +.+. +++-+ --++|.+ ...++.++
T Consensus 200 vlvLd~I~DP~NlGaIiRTA~afGv~~Vil~~--~~~~-~~-~----------kvvR-aS~Ga-~~~v~i~-~~~nl~~~ 262 (346)
T PRK10864 200 VLALEDVGNPHNLGGIMRSCAHFGVKGVVVQD--AALL-ES-G----------AAIR-TAEGG-AEHVQPI-TGDSFVDV 262 (346)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhCCCEEEECC--CCCC-Cc-h----------hHHH-HhcCh-hhcceEE-EeCCHHHH
Confidence 55566888999999999999999999997653 3321 11 1 1223 23222 2345544 45667777
Q ss_pred Hhhccc-ccEEEe-ccCCcccccccccCCCCCceEEEeCCCC-CCCHHHHHHH
Q psy15223 359 LISKIS-CARILL-SPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENLA 408 (2492)
Q Consensus 359 l~~~~~-~~~~l~-~~~~~~~~~~~~~~~~~~~v~~~iGPEG-Gfs~~E~~~~ 408 (2492)
|..... ...++. +..+...+.. ...++++.+++|.|| |+++..++..
T Consensus 263 L~~lk~~G~~Iv~t~~~~~~~l~~---~~~~~k~aLV~GnE~~GLs~~vl~~~ 312 (346)
T PRK10864 263 LDDFRQAGYTIVTTSSHKGTPLFK---ASLPAKMVLVLGQEYDGLSDAARQQG 312 (346)
T ss_pred HHHHHHCCCEEEEEeCCCCcchhh---cccCCCeEEEECCCCCCCCHHHHHhC
Confidence 754322 222332 2222222222 223567899999999 8999877653
No 366
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=25.29 E-value=1.5e+02 Score=35.46 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=30.0
Q ss_pred ecCCCCC-CHHHHHHHHHcCCeEeecCCccceeeccch
Q psy15223 1526 IGPEGGF-TEKEENLAYECGVIILSLGKRILRTETASL 1562 (2492)
Q Consensus 1526 iGPEGG~-s~~E~~~~~~~gf~~vsLG~rILR~ETA~~ 1562 (2492)
|-++||. ++++++.+.+.|+..|-+|..++|.+...-
T Consensus 176 via~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~~~ 213 (221)
T PRK01130 176 VIAEGRINTPEQAKKALELGAHAVVVGGAITRPEEITK 213 (221)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHHHH
Confidence 3468999 689999999999999999988888654443
No 367
>KOG2145|consensus
Probab=24.60 E-value=55 Score=39.32 Aligned_cols=86 Identities=24% Similarity=0.341 Sum_probs=51.7
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhh----hHHHHHHHHHHHHCCCccccccc-cccCChHHHHHHHHHhccCCCHHHHH
Q psy15223 1597 INRPKFILHDGPPYANGDIHIGHAVN----KILKDIIVKFYNMDGFDAQYVPG-YDCHGMPIEIQIEKLYGKNLSPIEIQ 1671 (2492)
Q Consensus 1597 ~~~~~f~i~~~pPy~nG~lHlGH~~~----~~~~Dii~Ry~rm~G~~V~~~~G-~D~hGlPie~~a~k~~~~~~~~~e~~ 1671 (2492)
...++||+..|-=--++.+|+||..- +-++|+ ++|..+.- +|. ||-+.+.++.++
T Consensus 81 eq~kpFyLYTGRGpSS~smHlGHliPFiftKwlQe~---------F~vpLVIqlTDD---------EKflwK~l~~ed-- 140 (397)
T KOG2145|consen 81 EQGKPFYLYTGRGPSSESMHLGHLIPFIFTKWLQDV---------FDVPLVIQLTDD---------EKFLWKDLTLED-- 140 (397)
T ss_pred HcCCceEEEeCCCCCccccccccchhHHHHHHHHHH---------hCCceEEEeccc---------HHHHHhhCcHHH--
Confidence 45678999999888899999999764 444554 34544321 111 344444555443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHH
Q psy15223 1672 NKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNE 1710 (2492)
Q Consensus 1672 ~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~ 1710 (2492)
|..++.+|.+.+ -..|. |-...|.-+|-+|.
T Consensus 141 --a~~~arENaKDI----ia~GF--Dp~kTfIFsn~~y~ 171 (397)
T KOG2145|consen 141 --AKKYARENAKDI----IAVGF--DPKKTFIFSNLDYM 171 (397)
T ss_pred --HHHHHHhcccce----EEecc--CCcceEEEechhhc
Confidence 566676666544 33454 66677766665543
No 368
>PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
Probab=24.31 E-value=3.4e+02 Score=33.14 Aligned_cols=111 Identities=12% Similarity=0.083 Sum_probs=64.3
Q ss_pred EEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCChhHHHh
Q psy15223 1413 KIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLI 1492 (2492)
Q Consensus 1413 l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~~~~l~ 1492 (2492)
++..+-.+..+=.+++-|.-+|++.++.+.-.-. ..++ ++.++.-| ...++.+....+++++++
T Consensus 8 VLv~~~~pgNiGaiaRa~~~fG~~~l~lv~p~~~---~~~~------------a~~~a~GA-~~~l~~a~i~~~l~eal~ 71 (245)
T PRK15114 8 VLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK---PDSQ------------AIALAAGA-SDVIGNATIVDTLDEALA 71 (245)
T ss_pred EEeCCCCCCcHHHHHHHHHhcCCCEEEEeCCCCC---CcCH------------HHHHcCCc-hhhcccCeEecCHHHHHh
Confidence 3445667788999999999999999998864421 1111 11122222 233455444568888877
Q ss_pred cccccceEEe-ccCCccc-ccc---------cccCCCCCceEEEecCCC-CCCHHHHHHHHH
Q psy15223 1493 SKISCARILL-SPRGRKK-LSC---------WANNQSPQEVELLIGPEG-GFTEKEENLAYE 1542 (2492)
Q Consensus 1493 ~~~~~~~~~~-~~~~~~~-~~~---------~~~~~~~~~~~l~iGPEG-G~s~~E~~~~~~ 1542 (2492)
... .++. +..+... ... .......++++|++|+|| |+|++|+++...
T Consensus 72 ~~~---~vvatt~r~~~~~~~~~~~~~~~~~~~~~~~~~~~alVFG~E~~GLs~e~l~~cd~ 130 (245)
T PRK15114 72 GCS---LVVGTSARSRTLPWPMLDPRECGLKSVAEAANAPVALVFGRERVGLTNDELQKCHY 130 (245)
T ss_pred cCC---EEEEEcCCccCCcccccCHHHHHHHHHhhccCCCEEEEECCCCCCCCHHHHHhCCe
Confidence 532 1222 2221111 000 000123467999999996 999999986654
No 369
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=23.29 E-value=2e+02 Score=35.49 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=27.2
Q ss_pred CCCC-CHHHHHHHHHcCceEeecCcceeeccc
Q psy15223 397 EGGF-TEKEENLAYECGVIILSLGKRILRTET 427 (2492)
Q Consensus 397 EGGf-s~~E~~~~~~~~~~~vsLg~~ILr~et 427 (2492)
|||. |++++..+...|+..|-.|..|+|++-
T Consensus 217 egGI~t~ed~~~~~~~Gad~vlVGsaI~~~~d 248 (260)
T PRK00278 217 ESGIFTPEDLKRLAKAGADAVLVGESLMRADD 248 (260)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECHHHcCCCC
Confidence 4465 899999999999999999999999864
No 370
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=22.89 E-value=52 Score=35.40 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=36.0
Q ss_pred CCCCCcccccccccc-cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhc
Q psy15223 48 PYLSPIPHRAKLALI-AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLL 108 (2492)
Q Consensus 48 ~~M~~a~~~a~~~~~-~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~ 108 (2492)
+....|++.|.+|.. -...|.|++|+ .+|+|. .|++-...--||+..+...|+..+....
T Consensus 35 ~l~~~A~~Aa~~syaPYS~~~sGvAL~~~~G~i~-~G~y~EnAAfNPSl~PlQ~AL~~~~~~G 96 (124)
T PF08211_consen 35 PLVQAALEAANRSYAPYSKCPSGVALLTSDGRIY-TGRYAENAAFNPSLPPLQAALVQAVLAG 96 (124)
T ss_dssp HHHHHHHHHHCT-B-TTT---EEEEEEETTS-EE-EEE-B--TTSTT-B-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEeecccCCChHHHHHHHHHHHHcC
Confidence 344455555565533 34678999999 678866 7888777778999999999998887653
No 371
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=22.17 E-value=1.5e+02 Score=31.08 Aligned_cols=57 Identities=18% Similarity=0.129 Sum_probs=31.5
Q ss_pred ccCCchhHHHhhcccccEEEeccCCcccccccccCCCCCceEEEe-CCCCCCCHHHHHH
Q psy15223 350 APNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLI-GPEGGFTEKEENL 407 (2492)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~i-GPEGGfs~~E~~~ 407 (2492)
.....++|++.-......+++...+..... .......+++.+++ |-|-|||+.|++.
T Consensus 23 ivlpdl~DAiEvl~p~~V~~i~~~~~~~~~-~~~~~~~~rvllVf~G~d~gfsk~El~~ 80 (106)
T PF09895_consen 23 IVLPDLKDAIEVLKPDVVYLISRSGEEEEK-LEFLKIEGRVLLVFSGSDPGFSKIELEL 80 (106)
T ss_pred EEeCCHHHHHHhcCCcEEEEEcCccccccc-ccccCcCCcEEEEEeCCCCCCChhHhcC
Confidence 345566777665445455555543332211 11112234455554 9999999999753
No 372
>KOG2713|consensus
Probab=22.07 E-value=2.8e+02 Score=33.86 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=44.0
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCcccc--------EEEEee----eEEcCCCceeeeccCCccCcchhhhccC
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYK--------ALLTHG----FVVDSKGKKMSKSKGNIIKPQKLCNLFG 2187 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk--------~v~~hG----~vld~~G~KMSKS~GNvi~p~~ii~~yG 2187 (2492)
|-.+..--|.||.. |-.|..+++-.-..-|+ .++..+ +-|-.--+|||||-+|--.--.+.+ +
T Consensus 154 YksThVPVGeDQsQ---HleL~r~lA~~fN~~Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~D--S 228 (347)
T KOG2713|consen 154 YKSTHVPVGEDQSQ---HLELARHLAQAFNKTYGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTD--S 228 (347)
T ss_pred hccccccCCccHHH---HHHHHHHHHHHHhhhccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecC--C
Confidence 44556667999974 44555555432111121 122221 1122234799999987544333332 2
Q ss_pred hhHHHHHH--hccCCCCcccccHHH
Q psy15223 2188 AEILRLWV--ASTDYSKDLSISNEI 2210 (2492)
Q Consensus 2188 aD~lR~~l--~s~~~~~d~~fs~~~ 2210 (2492)
.|.++==+ +.++..+++.|++..
T Consensus 229 ~~~I~~Ki~ka~TD~~~~vtYd~~~ 253 (347)
T KOG2713|consen 229 PDLIVKKIKKAQTDNTSGVTYDPAN 253 (347)
T ss_pred HHHHHHHHHHHhcccccceeeCCcc
Confidence 44443322 345677777777654
No 373
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.08 E-value=7.1e+02 Score=29.96 Aligned_cols=126 Identities=12% Similarity=0.034 Sum_probs=71.6
Q ss_pred ceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCChh
Q psy15223 1409 FVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFN 1488 (2492)
Q Consensus 1409 ~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~~ 1488 (2492)
..+-.++-....+..-.+++.+.+.|+..|=... |+ . .-.+.|+++..+..++.. ..+--..-..+.+
T Consensus 15 ~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~--~t------p---~a~~~i~~l~~~~~~~~p-~~~vGaGTVl~~e 82 (222)
T PRK07114 15 TGMVPVFYHADVEVAKKVIKACYDGGARVFEFTN--RG------D---FAHEVFAELVKYAAKELP-GMILGVGSIVDAA 82 (222)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeC--CC------C---cHHHHHHHHHHHHHhhCC-CeEEeeEeCcCHH
Confidence 3344444444555666788889999999874333 33 1 112445555555444432 2233344555666
Q ss_pred HHHhcccccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCC
Q psy15223 1489 NWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGK 1552 (2492)
Q Consensus 1489 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~ 1552 (2492)
++-........+++.|...+.+..... ...+.++ -|.+|+.|+..+.++|+..|-|=|
T Consensus 83 ~a~~a~~aGA~FiVsP~~~~~v~~~~~---~~~i~~i---PG~~TpsEi~~A~~~Ga~~vKlFP 140 (222)
T PRK07114 83 TAALYIQLGANFIVTPLFNPDIAKVCN---RRKVPYS---PGCGSLSEIGYAEELGCEIVKLFP 140 (222)
T ss_pred HHHHHHHcCCCEEECCCCCHHHHHHHH---HcCCCEe---CCCCCHHHHHHHHHCCCCEEEECc
Confidence 543333344567777754443322111 1123233 378999999999999999988766
No 374
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=20.60 E-value=1.6e+02 Score=34.69 Aligned_cols=117 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCccee-ccCCchhHHHhhcc-cccEEE
Q psy15223 292 DLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVL-APNIYFNNWLISKI-SCARIL 369 (2492)
Q Consensus 292 d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i-~~~~~~~~~l~~~~-~~~~~l 369 (2492)
.+.++++.+.|++-|+ +...-+...+. -+++.+++.|-...+.+ .+....+++..... ..+.+-
T Consensus 66 ~~~~~~~~~~Gad~i~-vh~~~~~~~~~-------------~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~ 131 (206)
T TIGR03128 66 EYEAEQAFAAGADIVT-VLGVADDATIK-------------GAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIG 131 (206)
T ss_pred HHHHHHHHHcCCCEEE-EeccCCHHHHH-------------HHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEE
Q ss_pred eccC---------CcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeecc
Q psy15223 370 LSPR---------GRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTE 426 (2492)
Q Consensus 370 ~~~~---------~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~e 426 (2492)
+.+. ..+.+..+...... ..|-+.||.+++.+..+.++|+..+.+|..|.+++
T Consensus 132 ~~pg~~~~~~~~~~~~~i~~l~~~~~~----~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~~ 193 (206)
T TIGR03128 132 VHTGLDEQAKGQNPFEDLQTILKLVKE----ARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAA 193 (206)
T ss_pred EcCCcCcccCCCCCHHHHHHHHHhcCC----CcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCCC
No 375
>PF14441 OTT_1508_deam: OTT_1508-like deaminase
Probab=20.14 E-value=1.6e+02 Score=32.65 Aligned_cols=45 Identities=18% Similarity=0.126 Sum_probs=34.3
Q ss_pred CCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhC
Q psy15223 89 RNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVR 137 (2492)
Q Consensus 89 ~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~g 137 (2492)
...+..||||..+....+. . ....-.+=+|--||.+|...|...+
T Consensus 63 ~~~~~vHaE~~ll~~~~~~-~---~~~~~yIG~SK~~C~lC~~~~~~~~ 107 (142)
T PF14441_consen 63 SFKPSVHAEMQLLDHLERH-F---DPPPRYIGCSKPSCFLCYLYFQAHG 107 (142)
T ss_pred CCCCCeehHHHHHHHHHHh-c---CCCCCEEEEeCchHHhHHHHHHHhC
Confidence 4456889999999887766 1 1113345588999999999999988
Done!