Query psy15223
Match_columns 2492
No_of_seqs 1312 out of 8924
Neff 7.9
Searched_HMMs 29240
Date Sat Aug 17 00:28:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ffy_A Isoleucyl-tRNA syntheta 100.0 2E-175 6E-180 1806.8 54.0 859 438-1338 35-914 (917)
2 1ffy_A Isoleucyl-tRNA syntheta 100.0 7E-175 2E-179 1801.2 53.5 881 1567-2489 15-915 (917)
3 1gax_A Valrs, valyl-tRNA synth 100.0 4E-148 1E-152 1519.5 66.2 751 1569-2437 6-771 (862)
4 1gax_A Valrs, valyl-tRNA synth 100.0 3E-146 1E-150 1500.8 67.2 727 446-1287 30-771 (862)
5 1ile_A Ilers, isoleucyl-tRNA s 100.0 4E-145 1E-149 1508.2 53.3 787 1568-2401 6-821 (821)
6 1ile_A Ilers, isoleucyl-tRNA s 100.0 3E-143 9E-148 1489.6 55.9 766 439-1250 26-820 (821)
7 1wz2_A Leucyl-tRNA synthetase; 100.0 6E-131 2E-135 1380.2 60.8 775 1568-2414 2-866 (967)
8 1wz2_A Leucyl-tRNA synthetase; 100.0 2E-128 6E-133 1354.7 59.1 749 448-1265 32-867 (967)
9 1wkb_A Leucyl-tRNA synthetase; 100.0 9E-120 3E-124 1258.6 54.4 718 1568-2345 2-810 (810)
10 2v0c_A Aminoacyl-tRNA syntheta 100.0 3E-119 1E-123 1241.1 38.9 704 1568-2394 2-833 (878)
11 1wkb_A Leucyl-tRNA synthetase; 100.0 4E-117 1E-121 1231.5 56.9 699 438-1195 21-810 (810)
12 4arc_A Leucine--tRNA ligase; l 100.0 6E-118 2E-122 1212.9 46.5 670 1569-2367 24-812 (880)
13 2v0c_A Aminoacyl-tRNA syntheta 100.0 2E-115 9E-120 1202.1 37.0 679 446-1247 29-836 (878)
14 4arc_A Leucine--tRNA ligase; l 100.0 4E-112 1E-116 1155.9 47.0 632 446-1216 49-811 (880)
15 3u1f_A Methionyl-tRNA syntheta 100.0 9.7E-81 3.3E-85 835.2 36.3 470 447-1196 6-499 (542)
16 1rqg_A Methionyl-tRNA syntheta 100.0 3E-79 1E-83 832.2 37.9 486 450-1196 2-521 (722)
17 3u1f_A Methionyl-tRNA syntheta 100.0 3.3E-79 1.1E-83 820.4 37.3 470 1597-2346 6-499 (542)
18 1rqg_A Methionyl-tRNA syntheta 100.0 1.6E-78 5.4E-83 825.2 39.4 487 1600-2347 2-522 (722)
19 2x1l_A Methionyl-tRNA syntheta 100.0 9.9E-74 3.4E-78 762.7 33.3 465 446-1197 8-492 (524)
20 2x1l_A Methionyl-tRNA syntheta 100.0 7.9E-73 2.7E-77 754.0 33.5 464 1597-2347 9-492 (524)
21 3kfl_A Methionyl-tRNA syntheta 100.0 4.8E-72 1.7E-76 746.3 36.8 469 447-1196 23-515 (564)
22 4dlp_A Aminoacyl-tRNA syntheta 100.0 6.2E-72 2.1E-76 744.8 36.6 460 448-1196 23-498 (536)
23 3kfl_A Methionyl-tRNA syntheta 100.0 2.3E-71 7.9E-76 739.7 36.7 469 1597-2346 23-515 (564)
24 2csx_A Methionyl-tRNA syntheta 100.0 2.9E-72 9.9E-77 743.8 27.8 456 449-1197 4-469 (497)
25 2d5b_A Methionyl-tRNA syntheta 100.0 5.4E-72 1.8E-76 743.2 28.6 456 449-1197 2-470 (500)
26 4dlp_A Aminoacyl-tRNA syntheta 100.0 5.8E-71 2E-75 735.4 36.7 461 1598-2346 23-498 (536)
27 2csx_A Methionyl-tRNA syntheta 100.0 1.8E-71 6.2E-76 736.1 28.4 456 1599-2347 4-469 (497)
28 3h99_A Methionyl-tRNA syntheta 100.0 4.3E-71 1.5E-75 740.5 30.8 487 445-1196 13-521 (560)
29 3h99_A Methionyl-tRNA syntheta 100.0 4.9E-71 1.7E-75 739.9 29.8 487 1595-2346 13-521 (560)
30 2d5b_A Methionyl-tRNA syntheta 100.0 5.8E-71 2E-75 733.3 29.6 457 1599-2347 2-470 (500)
31 4e8b_A Ribosomal RNA small sub 100.0 9.5E-53 3.2E-57 498.4 23.3 241 202-444 1-243 (251)
32 1vhy_A Hypothetical protein HI 100.0 5.1E-51 1.7E-55 484.5 21.3 242 202-444 3-246 (257)
33 1vhk_A Hypothetical protein YQ 100.0 2.6E-50 8.8E-55 481.4 21.5 242 202-443 1-254 (268)
34 1v6z_A Hypothetical protein TT 100.0 2.6E-49 8.8E-54 462.2 17.9 226 202-441 1-227 (228)
35 2egv_A UPF0088 protein AQ_165; 100.0 7.5E-48 2.6E-52 450.2 20.2 224 204-438 1-228 (229)
36 3kw2_A Probable R-RNA methyltr 100.0 1.1E-47 3.9E-52 454.3 17.6 234 201-444 2-247 (257)
37 1z85_A Hypothetical protein TM 100.0 3.4E-45 1.2E-49 425.8 15.6 220 204-442 13-233 (234)
38 3tqo_A Cysteinyl-tRNA syntheta 100.0 2.4E-37 8.1E-42 393.0 22.6 143 2121-2286 223-366 (462)
39 3tqo_A Cysteinyl-tRNA syntheta 100.0 3.4E-37 1.2E-41 391.5 22.4 149 971-1144 223-372 (462)
40 3sp1_A Cysteinyl-tRNA syntheta 100.0 4.1E-37 1.4E-41 391.1 16.6 154 971-1136 253-413 (501)
41 1wny_A Isoleucyl-tRNA syntheta 100.0 4.6E-36 1.6E-40 340.3 19.4 184 604-811 2-186 (186)
42 3sp1_A Cysteinyl-tRNA syntheta 100.0 3.1E-36 1.1E-40 383.1 19.5 154 2121-2286 253-413 (501)
43 4e8b_A Ribosomal RNA small sub 100.0 3E-36 1E-40 357.1 17.4 165 1407-1573 76-240 (251)
44 3c8z_A Cysteinyl-tRNA syntheta 100.0 6.4E-35 2.2E-39 374.2 29.3 141 970-1136 243-386 (414)
45 3c8z_A Cysteinyl-tRNA syntheta 100.0 2.2E-35 7.5E-40 378.5 24.3 141 2120-2286 243-386 (414)
46 1vhy_A Hypothetical protein HI 100.0 6.2E-36 2.1E-40 355.2 15.9 163 1408-1571 79-241 (257)
47 1vhk_A Hypothetical protein YQ 100.0 2E-35 6.7E-40 353.1 16.5 165 1407-1571 79-250 (268)
48 1wny_A Isoleucyl-tRNA syntheta 100.0 8.2E-35 2.8E-39 330.0 17.6 185 1754-1961 2-186 (186)
49 2egv_A UPF0088 protein AQ_165; 100.0 4.7E-35 1.6E-39 342.2 14.4 156 1408-1569 69-227 (229)
50 1v6z_A Hypothetical protein TT 100.0 5.8E-35 2E-39 341.2 13.9 156 1408-1571 70-225 (228)
51 3kw2_A Probable R-RNA methyltr 100.0 5.5E-34 1.9E-38 337.5 12.5 159 1406-1571 74-242 (257)
52 1li5_A Cysrs, cysteinyl-tRNA s 100.0 2.6E-32 9E-37 352.8 21.5 150 2121-2295 220-371 (461)
53 1li5_A Cysrs, cysteinyl-tRNA s 100.0 9E-32 3.1E-36 347.8 23.0 150 971-1145 220-371 (461)
54 1z85_A Hypothetical protein TM 100.0 3.4E-33 1.2E-37 325.1 8.2 149 1407-1572 83-231 (234)
55 1wka_A Valyl-tRNA synthetase; 100.0 7.3E-31 2.5E-35 284.9 16.8 140 604-808 3-146 (147)
56 3o0a_A Leucyl-tRNA synthetase 100.0 3.2E-32 1.1E-36 314.2 5.7 164 633-808 37-217 (219)
57 2nx8_A TRNA-specific adenosine 100.0 5.8E-32 2E-36 301.8 6.7 154 42-196 12-165 (179)
58 1z3a_A TRNA-specific adenosine 100.0 1.7E-31 5.8E-36 295.8 8.8 152 45-197 8-159 (168)
59 2wfg_A Cytosolic leucyl-tRNA s 100.0 1.1E-30 3.9E-35 309.8 15.1 173 631-814 30-258 (261)
60 1wka_A Valyl-tRNA synthetase; 100.0 3.1E-30 1.1E-34 280.0 16.4 140 1754-1958 3-146 (147)
61 3o0a_A Leucyl-tRNA synthetase 100.0 3.3E-31 1.1E-35 305.8 7.0 164 1783-1958 37-217 (219)
62 3pz6_A Leurs, leucyl-tRNA synt 100.0 1.6E-29 5.4E-34 294.6 18.9 169 631-809 77-308 (311)
63 2wfg_A Cytosolic leucyl-tRNA s 100.0 3.5E-30 1.2E-34 305.7 13.6 173 1781-1964 30-258 (261)
64 2b3j_A TRNA adenosine deaminas 100.0 9.1E-31 3.1E-35 288.4 7.5 149 45-194 6-154 (159)
65 2ajg_A Leucyl-tRNA synthetase; 100.0 2.3E-30 7.9E-35 296.1 9.7 168 604-804 9-194 (196)
66 3dh1_A TRNA-specific adenosine 100.0 9.2E-31 3.1E-35 293.7 5.2 153 43-196 23-183 (189)
67 1wwr_A TRNA adenosine deaminas 100.0 6.9E-30 2.4E-34 282.5 8.5 148 45-194 22-169 (171)
68 2ajg_A Leucyl-tRNA synthetase; 100.0 2E-29 6.8E-34 288.4 11.2 168 1754-1954 9-194 (196)
69 3pz6_A Leurs, leucyl-tRNA synt 100.0 8.7E-29 3E-33 288.4 16.5 169 1781-1959 77-308 (311)
70 2a8n_A Cytidine and deoxycytid 100.0 9.7E-30 3.3E-34 276.5 7.0 142 45-187 3-144 (144)
71 2wfd_A Leucyl-tRNA synthetase, 100.0 1.8E-28 6.1E-33 290.5 18.2 182 1760-1956 10-251 (252)
72 2wfd_A Leucyl-tRNA synthetase, 100.0 3.2E-28 1.1E-32 288.2 17.8 182 609-805 9-250 (252)
73 1wkq_A Guanine deaminase; doma 99.9 1.1E-29 3.8E-34 278.8 2.1 145 45-191 10-159 (164)
74 2g84_A Cytidine and deoxycytid 99.9 3.1E-28 1.1E-32 276.8 8.3 146 42-191 24-183 (197)
75 1p6o_A Cytosine deaminase; hyd 99.9 6.1E-27 2.1E-31 257.9 5.4 141 42-192 10-152 (161)
76 3fnr_A Arginyl-tRNA synthetase 99.9 4.2E-23 1.4E-27 264.6 30.1 200 973-1184 238-451 (464)
77 1iq0_A Arginyl-tRNA synthetase 99.9 5.8E-24 2E-28 284.0 22.0 169 1003-1182 380-587 (592)
78 2b3z_A Riboflavin biosynthesis 99.9 1.1E-24 3.7E-29 274.3 9.9 180 45-243 13-204 (373)
79 2g6v_A Riboflavin biosynthesis 99.9 1.1E-24 3.7E-29 276.2 9.0 182 43-243 27-220 (402)
80 2hxv_A Diaminohydroxyphosphori 99.9 4.1E-24 1.4E-28 267.7 11.8 178 48-243 16-205 (360)
81 3fnr_A Arginyl-tRNA synthetase 99.9 5.7E-22 1.9E-26 254.2 28.5 165 2124-2295 239-416 (464)
82 2zue_A Arginyl-tRNA synthetase 99.9 2.4E-21 8.1E-26 259.0 30.8 204 974-1184 380-626 (629)
83 1iq0_A Arginyl-tRNA synthetase 99.9 1.1E-21 3.8E-26 262.0 23.3 167 2154-2331 381-586 (592)
84 2zue_A Arginyl-tRNA synthetase 99.9 3.5E-20 1.2E-24 247.7 27.9 201 2124-2331 380-623 (629)
85 2hvw_A Deoxycytidylate deamina 99.9 2.2E-22 7.7E-27 224.5 5.6 116 44-166 40-170 (184)
86 1vq2_A DCMP deaminase, deoxycy 99.8 3.2E-22 1.1E-26 228.5 4.7 126 46-182 3-181 (193)
87 2w4l_A DCMP deaminse, deoxycyt 99.8 2.1E-22 7.1E-27 224.6 -2.6 133 44-188 11-164 (178)
88 1irx_A Lysyl-tRNA synthetase; 99.8 1.5E-20 5.2E-25 248.5 3.6 138 1582-1728 3-152 (523)
89 1irx_A Lysyl-tRNA synthetase; 99.8 8.6E-20 3E-24 241.3 6.4 121 450-578 20-152 (523)
90 3g8q_A Predicted RNA-binding p 99.8 4.3E-19 1.5E-23 193.6 9.1 97 52-168 8-104 (278)
91 1f7u_A Arginyl-tRNA synthetase 99.7 1.5E-14 5.2E-19 191.8 31.5 193 973-1181 367-601 (607)
92 2nyt_A Probable C->U-editing e 99.6 1.3E-15 4.6E-20 170.1 11.9 128 65-201 32-175 (190)
93 1f7u_A Arginyl-tRNA synthetase 99.6 1.5E-13 5.1E-18 182.4 29.0 192 2124-2331 368-601 (607)
94 1z3a_A TRNA-specific adenosine 99.4 9.4E-14 3.2E-18 153.9 5.2 83 1330-1412 76-159 (168)
95 2nx8_A TRNA-specific adenosine 99.4 7.3E-14 2.5E-18 156.1 3.8 82 1329-1410 82-164 (179)
96 3dh1_A TRNA-specific adenosine 99.4 9.6E-14 3.3E-18 156.0 4.1 80 1329-1408 98-180 (189)
97 2b3j_A TRNA adenosine deaminas 99.4 1.3E-13 4.5E-18 151.9 4.7 82 1330-1411 74-156 (159)
98 1wwr_A TRNA adenosine deaminas 99.3 8.8E-13 3E-17 146.0 5.1 79 1330-1409 90-169 (171)
99 2a8n_A Cytidine and deoxycytid 99.2 3.9E-12 1.3E-16 138.2 2.6 73 1330-1402 71-144 (144)
100 2g84_A Cytidine and deoxycytid 99.1 7E-12 2.4E-16 142.6 0.7 78 1329-1406 101-183 (197)
101 1wkq_A Guanine deaminase; doma 99.1 4.7E-12 1.6E-16 139.2 -3.0 77 1329-1406 78-159 (164)
102 1uwz_A Cytidine deaminase; CDD 99.0 1.3E-10 4.3E-15 124.0 4.3 89 46-137 3-97 (136)
103 2fr5_A Cytidine deaminase; tet 98.9 5E-10 1.7E-14 120.1 3.8 94 41-137 10-110 (146)
104 1p6o_A Cytosine deaminase; hyd 98.8 1.1E-09 3.7E-14 120.8 1.2 72 1330-1409 82-154 (161)
105 2z3g_A Blasticidin-S deaminase 98.7 5E-09 1.7E-13 110.8 4.3 95 44-143 5-106 (130)
106 3aii_A Glutamyl-tRNA synthetas 98.5 2.5E-07 8.5E-12 119.0 13.4 94 453-578 97-190 (553)
107 2b3z_A Riboflavin biosynthesis 98.5 6.8E-08 2.3E-12 121.7 5.1 88 1330-1421 74-170 (373)
108 2hxv_A Diaminohydroxyphosphori 98.3 1.4E-07 4.9E-12 118.2 3.6 84 1330-1418 77-169 (360)
109 2g6v_A Riboflavin biosynthesis 98.3 3E-07 1E-11 116.7 4.0 88 1330-1421 90-186 (402)
110 2cfo_A Glutamyl-tRNA synthetas 98.3 7.2E-06 2.5E-10 106.0 16.4 90 457-578 6-96 (492)
111 3b8f_A Putative blasticidin S 98.0 1E-06 3.4E-11 94.7 1.8 94 46-143 4-106 (142)
112 1r5t_A Cytidine deaminase; zin 97.9 4.8E-06 1.7E-10 89.3 4.6 90 46-137 11-107 (142)
113 3r2n_A Cytidine deaminase; str 97.9 4.3E-06 1.5E-10 88.6 4.0 93 47-144 11-111 (138)
114 2d30_A Cytidine deaminase; pur 97.7 2E-05 6.9E-10 84.0 4.3 86 49-137 15-106 (141)
115 3rcm_A TATD family hydrolase; 97.5 5.8E-05 2E-09 91.7 5.2 54 1-54 163-217 (287)
116 3g8q_A Predicted RNA-binding p 97.4 2.5E-05 8.7E-10 86.5 1.1 34 1330-1363 55-89 (278)
117 3ipw_A Hydrolase TATD family p 97.3 0.00012 4E-09 90.0 5.3 52 1-54 204-255 (325)
118 1vq2_A DCMP deaminase, deoxycy 97.3 2.5E-05 8.6E-10 89.0 -1.5 62 1330-1398 120-182 (193)
119 2w4l_A DCMP deaminse, deoxycyt 97.2 4.8E-06 1.6E-10 93.0 -8.1 73 1329-1408 94-169 (178)
120 1nzj_A Hypothetical protein YA 97.2 0.0002 6.8E-09 86.9 5.3 92 456-579 9-101 (298)
121 1nzj_A Hypothetical protein YA 97.2 0.00019 6.6E-09 87.0 5.2 94 1604-1729 7-101 (298)
122 3gg7_A Uncharacterized metallo 97.2 0.00017 5.7E-09 85.9 4.3 48 1-50 153-200 (254)
123 3aii_A Glutamyl-tRNA synthetas 97.2 0.00027 9.1E-09 91.3 5.8 94 1603-1728 97-190 (553)
124 1ctt_A Cytidine deaminase; hyd 97.1 0.00048 1.6E-08 82.5 7.3 89 48-138 190-285 (294)
125 1qtq_A GLNRS, protein (glutami 97.1 0.00039 1.3E-08 89.7 7.0 94 1603-1728 27-121 (553)
126 1qtq_A GLNRS, protein (glutami 97.0 0.00066 2.3E-08 87.7 7.5 94 453-578 27-121 (553)
127 3mpz_A Cytidine deaminase; ssg 97.0 0.00028 9.7E-09 75.3 3.4 92 49-143 28-125 (150)
128 3al0_C Glutamyl-tRNA(Gln) amid 97.0 0.0016 5.4E-08 86.1 10.7 128 419-579 92-233 (592)
129 2nyt_A Probable C->U-editing e 96.9 0.00022 7.4E-09 80.0 1.6 72 1328-1404 80-159 (190)
130 2hvw_A Deoxycytidylate deamina 96.9 0.00019 6.4E-09 80.4 0.8 35 1330-1364 121-156 (184)
131 3e2v_A 3'-5'-exonuclease; stru 96.9 0.00057 2E-08 85.5 4.8 50 1-52 258-309 (401)
132 3al0_C Glutamyl-tRNA(Gln) amid 96.8 0.0014 4.7E-08 86.7 7.5 96 1601-1729 129-233 (592)
133 2hz7_A Glutaminyl-tRNA synthet 96.7 0.0013 4.4E-08 88.6 7.1 94 1603-1728 67-161 (851)
134 2o5r_A Glutamyl-tRNA synthetas 96.7 0.00095 3.2E-08 86.4 5.6 96 1601-1728 12-116 (481)
135 4g6z_A Glutamate-tRNA ligase; 96.7 0.0016 5.4E-08 83.6 6.9 94 1604-1729 27-121 (490)
136 1ctt_A Cytidine deaminase; hyd 96.7 0.0018 6.3E-08 77.4 7.0 69 64-137 69-140 (294)
137 4g6z_A Glutamate-tRNA ligase; 96.6 0.0016 5.6E-08 83.4 6.7 93 455-579 28-121 (490)
138 2hz7_A Glutaminyl-tRNA synthet 96.6 0.0019 6.5E-08 87.0 7.2 94 453-578 67-161 (851)
139 2cyb_A Tyrosyl-tRNA synthetase 96.6 0.0015 5.1E-08 80.8 5.6 69 970-1048 169-239 (323)
140 2o5r_A Glutamyl-tRNA synthetas 96.6 0.0034 1.2E-07 81.3 8.9 96 451-578 12-116 (481)
141 2cyb_A Tyrosyl-tRNA synthetase 96.3 0.0029 1E-07 78.2 6.1 69 2120-2198 169-239 (323)
142 2cfo_A Glutamyl-tRNA synthetas 96.2 0.0029 1E-07 81.8 5.2 90 1607-1728 6-96 (492)
143 1xwy_A DNAse TATD, deoxyribonu 96.1 0.0041 1.4E-07 74.9 6.0 53 1-53 161-214 (264)
144 1zzm_A Putative deoxyribonucle 96.0 0.0034 1.2E-07 75.4 4.6 53 1-53 162-214 (259)
145 3guw_A Uncharacterized protein 96.0 0.0017 5.9E-08 77.6 1.9 46 1-49 162-210 (261)
146 3afh_A Glutamyl-tRNA synthetas 96.0 0.0072 2.5E-07 78.0 7.5 95 453-579 26-129 (488)
147 2ob3_A Parathion hydrolase; me 95.9 0.0039 1.3E-07 77.6 4.6 51 1-51 202-273 (330)
148 3afh_A Glutamyl-tRNA synthetas 95.7 0.018 6E-07 74.5 9.3 95 1603-1729 26-129 (488)
149 1j6o_A TATD-related deoxyribon 95.6 0.0077 2.6E-07 72.7 5.0 53 1-53 169-221 (268)
150 1j09_A Glutamyl-tRNA synthetas 95.5 0.016 5.6E-07 74.5 7.6 91 1607-1729 6-105 (468)
151 2xio_A Putative deoxyribonucle 95.4 0.0097 3.3E-07 73.1 5.0 50 1-52 176-225 (301)
152 2ja2_A Glutamyl-tRNA synthetas 95.3 0.017 5.7E-07 74.7 6.9 93 455-579 9-110 (498)
153 2ja2_A Glutamyl-tRNA synthetas 95.3 0.03 1E-06 72.3 9.1 94 1604-1729 8-110 (498)
154 3rhg_A Putative phophotriester 95.2 0.011 3.8E-07 74.1 4.9 53 1-53 236-301 (365)
155 2pid_A Tyrosyl-tRNA synthetase 95.2 0.016 5.6E-07 72.0 6.2 73 970-1047 209-281 (356)
156 1jil_A Tyrrs, tyrosyl-tRNA syn 95.1 0.029 9.8E-07 71.3 8.2 73 2120-2197 185-258 (420)
157 4gri_A Glutamate--tRNA ligase; 95.1 0.017 5.8E-07 75.6 6.3 91 457-579 29-128 (512)
158 2pid_A Tyrosyl-tRNA synthetase 95.1 0.022 7.5E-07 70.8 7.0 71 2120-2197 209-281 (356)
159 3oj6_A Blasticidin-S deaminase 95.1 0.017 5.7E-07 62.5 5.0 92 46-143 31-130 (158)
160 2yxn_A Tyrosyl-tRNA synthetase 95.1 0.015 5.2E-07 71.4 5.5 71 2120-2197 190-262 (322)
161 2ts1_A Tyrosyl-tRNA synthetase 95.1 0.027 9.2E-07 71.3 7.7 71 2120-2197 184-257 (419)
162 1y42_X Tyrosyl-tRNA synthetase 95.0 0.025 8.7E-07 71.0 7.3 61 970-1031 231-306 (392)
163 2jan_A Tyrosyl-tRNA synthetase 95.0 0.03 1E-06 70.9 7.9 73 2120-2197 186-259 (432)
164 2yxn_A Tyrosyl-tRNA synthetase 94.8 0.019 6.4E-07 70.6 5.2 73 970-1047 190-262 (322)
165 3gtx_A Organophosphorus hydrol 94.7 0.011 3.8E-07 73.4 2.8 51 1-51 226-285 (339)
166 4gri_A Glutamate--tRNA ligase; 94.7 0.047 1.6E-06 71.4 8.8 92 1606-1729 28-128 (512)
167 3k2g_A Resiniferatoxin-binding 94.7 0.016 5.3E-07 72.8 4.0 51 1-51 245-309 (364)
168 1y42_X Tyrosyl-tRNA synthetase 94.7 0.037 1.2E-06 69.6 7.3 75 2120-2197 231-320 (392)
169 3dmo_A Cytidine deaminase; str 94.6 0.045 1.6E-06 57.8 6.7 70 64-137 30-107 (138)
170 1j09_A Glutamyl-tRNA synthetas 94.6 0.039 1.3E-06 71.0 7.5 91 457-579 6-105 (468)
171 2ts1_A Tyrosyl-tRNA synthetase 94.5 0.039 1.3E-06 69.8 7.0 72 970-1046 184-256 (419)
172 1jil_A Tyrrs, tyrosyl-tRNA syn 94.5 0.043 1.5E-06 69.7 7.4 72 970-1046 185-257 (420)
173 2jan_A Tyrosyl-tRNA synthetase 94.1 0.043 1.5E-06 69.6 6.3 73 970-1047 186-259 (432)
174 2y1h_A Putative deoxyribonucle 94.1 0.033 1.1E-06 67.2 5.2 50 1-52 173-222 (272)
175 3ovg_A Amidohydrolase; structu 94.1 0.022 7.6E-07 71.1 3.5 50 1-50 222-278 (363)
176 3pnz_A Phosphotriesterase fami 93.8 0.034 1.2E-06 68.7 4.3 50 1-50 221-276 (330)
177 1h3f_A Tyrosyl-tRNA synthetase 93.5 0.067 2.3E-06 68.0 6.4 69 2121-2198 187-257 (432)
178 1h3f_A Tyrosyl-tRNA synthetase 93.4 0.063 2.2E-06 68.3 5.9 69 971-1048 187-257 (432)
179 2qmm_A UPF0217 protein AF_1056 92.6 0.19 6.4E-06 56.5 7.5 152 1388-1564 27-188 (197)
180 1n3l_A Tyrosyl-tRNA synthetase 92.5 0.066 2.3E-06 67.1 4.3 68 2120-2197 177-247 (372)
181 2qmm_A UPF0217 protein AF_1056 92.5 0.22 7.4E-06 56.0 7.8 102 329-434 83-190 (197)
182 4eg2_A Cytidine deaminase; UMP 92.4 0.16 5.4E-06 60.6 6.9 70 64-138 72-144 (298)
183 1n3l_A Tyrosyl-tRNA synthetase 92.3 0.071 2.4E-06 66.9 4.2 70 970-1047 177-247 (372)
184 1yix_A Deoxyribonuclease YCFH; 92.3 0.098 3.3E-06 62.7 5.3 52 2-53 161-212 (265)
185 2g36_A Tryptophanyl-tRNA synth 92.2 0.086 3E-06 65.1 4.6 72 2120-2197 152-229 (340)
186 2g36_A Tryptophanyl-tRNA synth 92.1 0.077 2.6E-06 65.6 4.1 71 970-1047 152-229 (340)
187 2dlc_X Tyrosyl-tRNA synthetase 92.0 0.083 2.8E-06 66.8 4.2 68 2120-2197 181-252 (394)
188 3tzl_A Tryptophanyl-tRNA synth 91.7 0.097 3.3E-06 64.2 4.2 73 2120-2197 138-216 (322)
189 3tzl_A Tryptophanyl-tRNA synth 91.6 0.085 2.9E-06 64.7 3.6 71 970-1046 138-215 (322)
190 2dlc_X Tyrosyl-tRNA synthetase 91.6 0.09 3.1E-06 66.5 4.0 69 970-1046 181-251 (394)
191 2gzx_A Putative TATD related D 91.5 0.14 4.8E-06 61.3 5.3 52 2-53 159-211 (265)
192 2el7_A Tryptophanyl-tRNA synth 90.4 0.17 5.9E-06 62.5 4.7 72 970-1047 140-219 (337)
193 2zp1_A Tyrosyl-tRNA synthetase 90.4 0.15 5E-06 62.5 4.0 64 2121-2196 163-227 (314)
194 2el7_A Tryptophanyl-tRNA synth 90.3 0.19 6.5E-06 62.1 5.0 73 2120-2197 140-219 (337)
195 3v4k_A DNA DC->DU-editing enzy 90.1 0.42 1.5E-05 53.3 7.0 103 93-201 78-188 (203)
196 2zp1_A Tyrosyl-tRNA synthetase 90.1 0.16 5.3E-06 62.3 3.9 55 971-1032 163-218 (314)
197 4eg2_A Cytidine deaminase; UMP 89.6 0.36 1.2E-05 57.5 6.3 72 64-137 211-288 (298)
198 1yi8_B Tryptophanyl-tRNA synth 89.6 0.12 4.1E-06 64.2 2.4 70 970-1046 161-238 (351)
199 3vgj_A Tyrosyl-tRNA synthetase 89.5 0.19 6.5E-06 62.8 4.1 59 970-1031 199-261 (373)
200 1yi8_B Tryptophanyl-tRNA synth 89.5 0.13 4.5E-06 63.8 2.6 72 2120-2197 161-239 (351)
201 3vgj_A Tyrosyl-tRNA synthetase 89.3 0.21 7.1E-06 62.5 4.2 68 2120-2196 199-271 (373)
202 3i05_A Tryptophanyl-tRNA synth 88.6 0.18 6.3E-06 63.2 3.0 64 2122-2195 225-292 (395)
203 2ip1_A Tryptophanyl-tRNA synth 88.2 0.22 7.5E-06 63.4 3.4 57 2120-2181 248-309 (432)
204 3i05_A Tryptophanyl-tRNA synth 88.2 0.19 6.6E-06 63.1 2.9 55 972-1031 225-283 (395)
205 2ip1_A Tryptophanyl-tRNA synth 88.1 0.22 7.6E-06 63.3 3.4 57 970-1031 248-309 (432)
206 3jxe_A Tryptophanyl-tRNA synth 87.9 0.26 9E-06 61.7 3.8 57 2122-2181 208-267 (392)
207 3jxe_A Tryptophanyl-tRNA synth 87.9 0.27 9.4E-06 61.5 3.9 56 972-1030 208-266 (392)
208 3aia_A UPF0217 protein MJ1640; 87.8 0.47 1.6E-05 53.7 5.4 76 1485-1565 123-200 (211)
209 2cya_A Tyrosyl-tRNA synthetase 87.8 0.3 1E-05 61.0 4.2 68 970-1047 176-263 (364)
210 2j5b_A Tyrosyl-tRNA synthetase 87.7 0.28 9.6E-06 60.9 3.9 58 971-1031 186-246 (348)
211 2j5b_A Tyrosyl-tRNA synthetase 87.6 0.3 1E-05 60.6 4.0 58 2121-2181 186-246 (348)
212 2cya_A Tyrosyl-tRNA synthetase 87.6 0.32 1.1E-05 60.8 4.3 67 2121-2197 177-263 (364)
213 3aia_A UPF0217 protein MJ1640; 87.5 0.48 1.6E-05 53.7 5.2 80 352-436 122-203 (211)
214 3tze_A Tryptophanyl-tRNA synth 86.6 0.33 1.1E-05 61.0 3.6 57 2120-2181 242-303 (406)
215 1r6u_A Tryptophanyl-tRNA synth 86.5 0.42 1.4E-05 60.7 4.5 57 2120-2181 255-316 (437)
216 3hv0_A Tryptophanyl-tRNA synth 86.4 0.35 1.2E-05 60.6 3.7 56 2123-2181 222-280 (393)
217 3tze_A Tryptophanyl-tRNA synth 86.3 0.36 1.2E-05 60.7 3.8 59 970-1031 242-303 (406)
218 1r6u_A Tryptophanyl-tRNA synth 86.3 0.43 1.5E-05 60.6 4.5 57 970-1031 255-316 (437)
219 3hzr_A Tryptophanyl-tRNA synth 85.4 0.51 1.8E-05 59.0 4.5 55 972-1031 225-283 (386)
220 3hv0_A Tryptophanyl-tRNA synth 85.4 0.4 1.4E-05 60.2 3.5 56 973-1031 222-280 (393)
221 1r6t_A Tryptophanyl-tRNA synth 84.9 0.56 1.9E-05 60.5 4.6 58 2120-2182 302-364 (477)
222 1i6k_A TRPRS, tryptophanyl-tRN 84.8 0.38 1.3E-05 59.1 2.9 59 970-1031 136-208 (328)
223 3tn4_A Phosphotriesterase; lac 84.7 0.54 1.9E-05 58.5 4.2 54 1-54 246-315 (360)
224 3hzr_A Tryptophanyl-tRNA synth 84.6 0.56 1.9E-05 58.6 4.3 65 2122-2196 225-293 (386)
225 2yy5_A Tryptophanyl-tRNA synth 84.6 0.38 1.3E-05 59.7 2.7 69 2120-2196 146-228 (348)
226 1r6t_A Tryptophanyl-tRNA synth 84.5 0.58 2E-05 60.3 4.5 58 970-1032 302-364 (477)
227 1i6k_A TRPRS, tryptophanyl-tRN 84.4 0.42 1.4E-05 58.8 3.0 59 2120-2181 136-208 (328)
228 2yy5_A Tryptophanyl-tRNA synth 83.7 0.38 1.3E-05 59.6 2.2 59 970-1031 146-218 (348)
229 3foc_A Tryptophanyl-tRNA synth 83.7 0.47 1.6E-05 60.1 3.1 53 2124-2179 290-345 (451)
230 3foc_A Tryptophanyl-tRNA synth 83.3 0.47 1.6E-05 60.2 2.8 54 973-1029 289-345 (451)
231 1bf6_A Phosphotriesterase homo 83.1 0.8 2.7E-05 55.4 4.7 51 1-51 191-247 (291)
232 3p0j_A Tyrosyl-tRNA synthetase 83.0 0.65 2.2E-05 62.5 4.1 57 971-1030 183-243 (690)
233 3p0j_A Tyrosyl-tRNA synthetase 82.3 0.72 2.5E-05 62.0 4.2 57 2120-2180 182-243 (690)
234 2cyc_A Tyrosyl-tRNA synthetase 79.9 0.97 3.3E-05 56.6 3.9 69 971-1047 180-276 (375)
235 2vc7_A Aryldialkylphosphatase; 79.8 1.1 3.9E-05 54.8 4.5 50 1-50 205-260 (314)
236 2cyc_A Tyrosyl-tRNA synthetase 79.7 0.99 3.4E-05 56.5 3.9 69 2121-2197 180-276 (375)
237 3vow_A Probable DNA DC->DU-edi 79.2 1.4 4.8E-05 48.7 4.4 132 65-201 31-175 (190)
238 2qwv_A UPF0217 protein VC_A105 77.3 5.1 0.00018 44.8 8.1 151 1389-1564 33-197 (208)
239 1zjr_A TRNA (guanosine-2'-O-)- 74.4 11 0.00036 43.3 10.3 122 1398-1539 14-139 (211)
240 1v2x_A TRNA (GM18) methyltrans 72.4 7.5 0.00026 43.9 8.2 121 1399-1540 12-136 (194)
241 3n9i_A Tryptophanyl-tRNA synth 72.3 2.2 7.5E-05 52.5 4.1 71 2120-2196 151-233 (346)
242 3n9i_A Tryptophanyl-tRNA synth 69.7 2.5 8.5E-05 52.1 3.7 60 970-1030 151-222 (346)
243 3sz3_A Tryptophanyl-tRNA synth 66.2 1 3.5E-05 55.4 -0.7 72 2120-2196 142-227 (341)
244 3sz3_A Tryptophanyl-tRNA synth 65.8 0.84 2.9E-05 56.2 -1.6 62 970-1031 142-217 (341)
245 3prh_A Tryptophanyl-tRNA synth 63.5 4 0.00014 50.9 3.9 72 2120-2196 170-252 (388)
246 2qwv_A UPF0217 protein VC_A105 62.4 3.5 0.00012 46.1 2.7 79 353-435 121-200 (208)
247 3prh_A Tryptophanyl-tRNA synth 62.0 4.3 0.00015 50.7 3.8 62 970-1031 170-242 (388)
248 3l8u_A SMU.1707C, putative rRN 58.5 28 0.00097 38.7 9.3 123 1400-1541 8-132 (182)
249 2ha8_A TAR (HIV-1) RNA loop bi 56.9 17 0.00058 40.6 7.2 114 1408-1540 24-143 (184)
250 3a04_A Tryptophanyl-tRNA synth 51.8 9.9 0.00034 47.4 4.6 56 971-1029 208-268 (372)
251 4i6k_A Amidohydrolase family p 51.3 9 0.00031 46.3 4.1 50 4-53 197-255 (294)
252 3a04_A Tryptophanyl-tRNA synth 49.9 11 0.00037 47.1 4.5 57 2121-2180 208-269 (372)
253 3l8u_A SMU.1707C, putative rRN 49.1 65 0.0022 35.8 10.2 110 279-406 19-129 (182)
254 2ha8_A TAR (HIV-1) RNA loop bi 44.3 63 0.0022 35.9 9.2 110 279-407 28-142 (184)
255 1gz0_A Hypothetical tRNA/RRNA 42.4 63 0.0021 37.9 9.3 112 1410-1540 106-220 (253)
256 2ffi_A 2-pyrone-4,6-dicarboxyl 41.2 11 0.00038 45.2 2.6 50 3-52 183-242 (288)
257 1zjr_A TRNA (guanosine-2'-O-)- 40.3 48 0.0016 37.8 7.6 109 279-407 27-139 (211)
258 3nk6_A 23S rRNA methyltransfer 39.8 54 0.0019 39.0 8.2 112 1411-1540 121-235 (277)
259 1v2x_A TRNA (GM18) methyltrans 37.6 86 0.0029 35.2 9.0 108 279-407 24-135 (194)
260 1ipa_A RRMH, RNA 2'-O-ribose m 36.7 1.1E+02 0.0037 36.4 10.1 110 1410-1540 117-229 (274)
261 3cjp_A Predicted amidohydrolas 36.6 16 0.00055 43.4 3.0 38 11-52 196-233 (272)
262 2f6k_A Metal-dependent hydrola 35.7 16 0.00054 44.2 2.8 45 4-52 228-272 (307)
263 2dvt_A Thermophilic reversible 34.9 18 0.00062 44.1 3.2 44 5-51 249-292 (327)
264 3irs_A Uncharacterized protein 33.4 26 0.00089 42.1 4.2 42 11-52 207-249 (291)
265 3nk6_A 23S rRNA methyltransfer 32.9 1.6E+02 0.0054 35.0 10.7 111 279-407 121-234 (277)
266 1ipa_A RRMH, RNA 2'-O-ribose m 32.1 1.4E+02 0.0047 35.4 10.0 109 278-407 117-228 (274)
267 3kty_A Probable methyltransfer 30.7 58 0.002 35.8 6.1 114 1411-1540 12-140 (173)
268 1gz0_A Hypothetical tRNA/RRNA 29.3 1E+02 0.0036 36.0 8.2 110 279-407 107-219 (253)
269 1x7o_A Avirb, rRNA methyltrans 28.4 1.4E+02 0.0047 35.7 9.2 111 1411-1540 128-246 (287)
270 3n4j_A RNA methyltransferase; 25.2 1.7E+02 0.0059 31.8 8.5 107 1414-1539 9-121 (165)
271 1x7o_A Avirb, rRNA methyltrans 24.7 1.8E+02 0.0061 34.8 9.2 110 279-407 128-245 (287)
272 2ko5_A Ring finger protein Z; 22.6 16 0.00053 35.3 -0.4 41 1307-1348 28-71 (99)
273 3n4j_A RNA methyltransferase; 22.5 2.7E+02 0.0093 30.1 9.5 109 280-407 7-121 (165)
274 3tsm_A IGPS, indole-3-glycerol 21.2 70 0.0024 37.9 4.6 37 1528-1564 225-262 (272)
275 2i6d_A RNA methyltransferase, 21.0 1E+02 0.0034 36.3 5.9 112 1411-1539 105-219 (257)
276 2qpx_A Predicted metal-depende 20.5 56 0.0019 40.8 3.9 47 4-51 271-323 (376)
No 1
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=1.9e-175 Score=1806.83 Aligned_cols=859 Identities=39% Similarity=0.713 Sum_probs=790.9
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc---
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK--- 513 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~--- 513 (2492)
.+|+... .++++++|+||+|||||||.||||||+|+|++||++||+||+||+|+|+|||||||||||.+|+|. |.
T Consensus 35 ~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~-G~~~~ 113 (917)
T 1ffy_A 35 DQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKK-GVDRK 113 (917)
T ss_dssp THHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHH-TCCST
T ss_pred CCcccchhhccCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHc-CCCch
Confidence 4555544 356789999999999999999999999999999999999999999999999999999999999998 53
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccc
Q psy15223 514 NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSAL 593 (2492)
Q Consensus 514 ~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taL 593 (2492)
++++++|+++|++|+.++++.|++||+|||+++||+++|+||||.|+++++|+|.+|+++|+|||+.+||+|||.|+|+|
T Consensus 114 ~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~L 193 (917)
T 1ffy_A 114 KMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSL 193 (917)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCcee
Q psy15223 594 AEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLL 673 (2492)
Q Consensus 594 ae~Evey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~ 673 (2492)
||+||+|+|+.++++||+|++.+..+. + ..+.+++||||||||||||+||||||+++|++++.++ +.+
T Consensus 194 ae~eVey~d~~~~~~~v~f~~~~~~g~-----~----~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~---~~~ 261 (917)
T 1ffy_A 194 AEAEIEYHDKRSASIYVAFNVKDDKGV-----V----DADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNG---EKY 261 (917)
T ss_dssp CGGGEEEEEEEEEEEECCBCCCSSTTG-----G----GTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTT---TCC
T ss_pred chhhhhcccccCceEEEEEEecccccc-----c----CCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCC---cee
Confidence 999999999999999999999763211 0 1257899999999999999999999999999998765 789
Q ss_pred eeeHHhHHHHHHHcCCcCcE---EEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHH
Q psy15223 674 ILAFNLVKSCLKKFGFKGNI---IGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDF 750 (2492)
Q Consensus 674 i~a~~~~~~~~~~~~~~~~~---~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~ 750 (2492)
++|++++++++++.+.+.+. +.+++|++|.|++|.|||+ ++++||++++||++++|||+||+|||||++||
T Consensus 262 i~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~------~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~ 335 (917)
T 1ffy_A 262 IIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFL------DRESLVINGDHVTTDAGTGCVHTAPGHGEDDY 335 (917)
T ss_dssp CCCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCTT------CCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHH
T ss_pred ehHHHHHHHHHHhcCcccceeeeeeeeecccccCCEEECCCC------CCeeeEEeccccccCCCCceeEeCCCCCHHHH
Confidence 99999999999998876553 4889999999999999998 89999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccc
Q psy15223 751 LIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQW 830 (2492)
Q Consensus 751 ~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QW 830 (2492)
++|++||| ++++|||++|+|++++|.|+|+++++|++.|++.|++.|.|++.++++|+||||||||+|||+|+|+||
T Consensus 336 ~~~~~~~L---~~~~~vd~~G~~~~~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QW 412 (917)
T 1ffy_A 336 IVGQQYEL---PVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQW 412 (917)
T ss_dssp HTTTSSSC---CCCCCCCSSSCCCTTCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEE
T ss_pred HHHHHcCC---CeeeeECCCceeCCcccccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccce
Confidence 99999999 888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHH
Q psy15223 831 FINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIEL 910 (2492)
Q Consensus 831 Fi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~ 910 (2492)
|+++++ +|+++++++++++|+|+++++|+.+||++++||||||||+||+|||+|||++ |+++ .+.+++.+
T Consensus 413 Fi~~~~--------lr~~~l~~i~~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~-g~~~-~~~~~~~~ 482 (917)
T 1ffy_A 413 FASISK--------VRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAEN-GEII-MTKETVNH 482 (917)
T ss_dssp EECHHH--------HHHHHHHHHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTT-SCEE-CCHHHHHH
T ss_pred EeeHHH--------HHHHHHHHHhcCcccCHHHHHHHHHHHhcCccceeeccCCcCcccceeeCCC-CCEe-cCHHHHHH
Confidence 999998 9999999999999999999999999999999999999999999999999988 7655 57779999
Q ss_pred HHHHHhhcCCccccccCchhhcCC-------CccCceecCCccccccccccccchhcccCccccCCcCeeeeecccccch
Q psy15223 911 IAKKIELNGIEIWQNLDIKEFLGD-------DAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHR 983 (2492)
Q Consensus 911 ~~~~~~~~g~~~w~~~~~~~~~~~-------~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~r 983 (2492)
+++.++..|.++|++....++++. ++..+.+++||||||||||++|+++++.++ +..||+|+|++|+||+|
T Consensus 483 i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~~~--~~~~P~Dl~~~G~D~~r 560 (917)
T 1ffy_A 483 VADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRP--ELSFPADMYLEGSDQYR 560 (917)
T ss_dssp HHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTST--TCCSSBSEEEEEGGGGT
T ss_pred HHHHhhhcCCcccccCCHHHhcccccccccCCcccccccCCCcCeecCCCCCHHHHcCCch--hcCCCceEEEEEecccc
Confidence 999999999999998887777752 124799999999999999999999887654 34599999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcccccccCHHHHHH
Q psy15223 984 GWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNR 1063 (2492)
Q Consensus 984 gwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~~d~~fs~~~l~~ 1063 (2492)
|||+++++++.++.+..||++|++||||+|.+|+|||||+||+|+|.+++++||+|++|||++++++++|++||++.+++
T Consensus 561 ~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls~~~~~D~~fs~~~l~~ 640 (917)
T 1ffy_A 561 GWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQ 640 (917)
T ss_dssp THHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHH
T ss_pred cHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhccCCCCCcccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhH
Q psy15223 1064 VVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY 1143 (2492)
Q Consensus 1064 ~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Y 1143 (2492)
+.+++++|+|++||+++|+.+|++..+.++...+...|+|++++++++++++.++|++|+|++|++.|++|++++||++|
T Consensus 641 ~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Y 720 (917)
T 1ffy_A 641 TSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFY 720 (917)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876432223344567899999999999999999999999999999999999988999999
Q ss_pred HHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchH
Q psy15223 1144 LDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKK 1223 (2492)
Q Consensus 1144 l~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~ 1223 (2492)
++++|+|+|+...++..|++++++|+.++..+++||+|||||+|||||+.|+.. ..+|||++.||+.++ .+..
T Consensus 721 l~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~-----~~~sv~~~~wP~~~~--~~~~ 793 (917)
T 1ffy_A 721 LDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHV-----KEESVHLADMPKVVE--VDQA 793 (917)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTC-----SSSSGGGSCCCCCCC--CCHH
T ss_pred HHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHcccC-----CCCCeEecCCCCCCc--chHH
Confidence 999999999987777788999999999999999999999999999999999752 236999999998765 3567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCch--hHHHHHHhHHHHHHhhhccceEEeecCCCC----c
Q psy15223 1224 LLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKL--DFEILNEFGEELKFFLLTSSVSLFQIKNLS----E 1297 (2492)
Q Consensus 1224 ~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~~--~~~~l~~~~~~L~~l~~vs~v~i~~~~~~~----~ 1297 (2492)
+++.|+.++++|++|+++++.+|+++.|+.++++.|+|..+++ ..+.|+.+ ++|+++++||+|++......+ +
T Consensus 794 l~~~~~~~~~v~~~v~~~~~~~R~~~~i~~~l~~~v~i~~~~~~~~~~~l~~~-~~l~~~~~~s~~~~~~~~~~~~~~~~ 872 (917)
T 1ffy_A 794 LLDKWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNASEFLTSF-DALHQLFIVSQVKVVDKLDDQATAYE 872 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSSGGGEEEEEECCSSCCHHHHGGGC-SCHHHHTTSSEEEECSCCCTTSEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEeCChhhHHHHHhhH-HHHHHHhcccceEEecCCcccccccc
Confidence 7889999999999999999999999999999999999987655 66777777 789999999999996422111 2
Q ss_pred eE-EEEEecCCCCCccccccccccCCCCCCCCcchhhhhhcc
Q psy15223 1298 EC-IIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLF 1338 (2492)
Q Consensus 1298 ~~-v~v~~~~~~kC~RCw~~~~~v~~~~~~~~LC~RC~~~v~ 1338 (2492)
+. |.|.++.++||||||+|.++||.++++|.||.||+.++.
T Consensus 873 ~~~~~~~~~~~~kc~rcw~~~~~~~~~~~~~~~c~rc~~~~~ 914 (917)
T 1ffy_A 873 HGDIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVK 914 (917)
T ss_dssp TEEEEEEECSSEECTTTCCEESCCEEETTEEEECHHHHHHHH
T ss_pred cceEEEEeCCCCCCcccCCCccccccCCCCCCcCHhHHHHHH
Confidence 56 999999999999999999999999999999999999885
No 2
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=6.9e-175 Score=1801.25 Aligned_cols=881 Identities=39% Similarity=0.717 Sum_probs=810.2
Q ss_pred hhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccc
Q psy15223 1567 ILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 1646 (2492)
Q Consensus 1567 ~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~ 1646 (2492)
+|+++++++|++||++|+++++|++..+.+.++++|+||+|||||||.|||||++|+|++||++||+||+||+|+|+|||
T Consensus 15 pm~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~Gw 94 (917)
T 1ffy_A 15 PMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGW 94 (917)
T ss_dssp CSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEE
T ss_pred CCCCChHHHhHHHHHHHHHCCCcccchhhccCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccC
Confidence 47899999999999999999999987655678899999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhC
Q psy15223 1647 DCHGMPIEIQIEKLYGK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKK 1723 (2492)
Q Consensus 1647 D~hGlPie~~a~k~~~~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~k 1723 (2492)
||||||||.+|+|. |. ++++++|+++|++|+.++++.|++||+|||+++||+++|+||||.|+++++|+|.+|+++
T Consensus 95 D~hGlpiE~~a~k~-G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~k 173 (917)
T 1ffy_A 95 DTHGLPIEQALTKK-GVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADK 173 (917)
T ss_dssp BCCSHHHHHHHHHH-TCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHc-CCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHc
Confidence 99999999999998 53 578999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEE
Q psy15223 1724 GYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALH 1803 (2492)
Q Consensus 1724 Gliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~ 1803 (2492)
|+|||+.+||+|||.|+|+|||+||+|++..++++||+|++.+.... + ..+.+++||||||||||||+|||
T Consensus 174 GliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~~~v~f~~~~~~g~---~------~~~~~~~i~TTrP~Tl~~~~av~ 244 (917)
T 1ffy_A 174 GLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGV---V------DADAKFIIWTTTPWTIPSNVAIT 244 (917)
T ss_dssp TCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEEEECCBCCCSSTTG---G------GTTCCBCCEESCGGGSSCCBCCC
T ss_pred CCeEecccceeccCCCCcCcchhhhhcccccCceEEEEEEecccccc---c------CCCCeEEEEeCCcchhhhceEEE
Confidence 99999999999999999999999999999999999999998763210 0 12578999999999999999999
Q ss_pred EcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCce--E-EEEecccccccEEeCCCCccccCCCceecEEecCcc
Q psy15223 1804 VHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNI--I-GICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYI 1880 (2492)
Q Consensus 1804 v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~--v-~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V 1880 (2492)
|||+++|++++.++ +.+|+|++++++++++.+.+.+. + .+++|.+|.|++|.|||+ ++.+||++++||
T Consensus 245 v~p~~~Y~~v~~~~---~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~------~~~~pvi~~~~V 315 (917)
T 1ffy_A 245 VHPELKYGQYNVNG---EKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFL------DRESLVINGDHV 315 (917)
T ss_dssp CCTTCCCCCCCTTT---TCCCCCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCTT------CCSBCCCCCCSS
T ss_pred ECCCCceEEEEeCC---ceeehHHHHHHHHHHhcCcccceeeeeeeeecccccCCEEECCCC------CCeeeEEecccc
Confidence 99999999998754 67999999999999888766554 4 889999999999999998 899999999999
Q ss_pred ccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecc
Q psy15223 1881 TVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEH 1960 (2492)
Q Consensus 1881 ~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h 1960 (2492)
++++|||+||+|||||++||+++++||| +++++||++|+|++++|.|+|+++++|++.|++.|+++|.|++.++++|
T Consensus 316 ~~~~GTG~V~~~Pah~~~D~~~~~~~~L---~~~~~vd~~G~~~~~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~h 392 (917)
T 1ffy_A 316 TTDAGTGCVHTAPGHGEDDYIVGQQYEL---PVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITH 392 (917)
T ss_dssp CCSSSCSCCCBCTTSCSHHHHTTTSSSC---CCCCCCCSSSCCCTTCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEE
T ss_pred ccCCCCceeEeCCCCCHHHHHHHHHcCC---CeeeeECCCceeCCcccccCCcCHHHHHHHHHHHHHhCCCccccccccc
Confidence 9999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceee
Q psy15223 1961 SYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIA 2040 (2492)
Q Consensus 1961 ~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP 2040 (2492)
+||||||||+||++|+++|||+++++ ||+++++++++++|+|+++++++.+||++++||||||||+||+|||
T Consensus 393 s~p~c~R~~~pv~~r~t~QWFi~~~~--------lr~~~l~~i~~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP 464 (917)
T 1ffy_A 393 SYPHDWRTKKPVIFRATPQWFASISK--------VRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLP 464 (917)
T ss_dssp EEEEETTTCCBCEEEEEEEEEECHHH--------HHHHHHHHHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCC
T ss_pred cCCEecCCCCEEEEEeccceEeeHHH--------HHHHHHHHHhcCcccCHHHHHHHHHHHhcCccceeeccCCcCcccc
Confidence 99999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCCC-------ccCceecccccccccccCcchhhhccCC
Q psy15223 2041 FFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDD-------AVNYKKSNDTLDVWFDSGITHQTVIRGS 2113 (2492)
Q Consensus 2041 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~-------~~~~~~~~dvlDvWfdSg~~~~~~~~~~ 2113 (2492)
+|+|++ +... .+++++.++++.++..|.+.|++....++++.. ...+.+++||||||||||++|+++++.+
T Consensus 465 ~~~~~~-g~~~-~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~~ 542 (917)
T 1ffy_A 465 VFYAEN-GEII-MTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETR 542 (917)
T ss_dssp CEECTT-SCEE-CCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTS
T ss_pred eeeCCC-CCEe-cCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCcccccccCCCcCeecCCCCCHHHHcCCc
Confidence 999988 5543 466789999999999999999988777777521 2479999999999999999999988665
Q ss_pred ccccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHH
Q psy15223 2114 HKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 2193 (2492)
Q Consensus 2114 ~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~ 2193 (2492)
+ ++.||+|+|++|+||+||||+++++++.++.+..||+++++||||+|.+|+|||||+||+|+|.+++++||+|++||
T Consensus 543 ~--~~~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~ 620 (917)
T 1ffy_A 543 P--ELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARL 620 (917)
T ss_dssp T--TCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHH
T ss_pred h--hcCCCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHH
Confidence 4 45699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccc
Q psy15223 2194 WVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYE 2273 (2492)
Q Consensus 2194 ~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~ 2273 (2492)
|++++++++|++|+++.++++.+.+++|+|+++|+++++.+|++....++...+..+|+|+++++++++++++++|++|+
T Consensus 621 ~lls~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~ 700 (917)
T 1ffy_A 621 WVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFD 700 (917)
T ss_dssp HHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999887764212223345678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccC
Q psy15223 2274 FHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIES 2353 (2492)
Q Consensus 2274 f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~ 2353 (2492)
|++|++.+++|++++|+++|++++|+|+|+...++.+|++++++|++++..+++||+|||||+|||||+.|++. .
T Consensus 701 f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~-----~ 775 (917)
T 1ffy_A 701 YLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHV-----K 775 (917)
T ss_dssp HHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTC-----S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHcccC-----C
Confidence 99999999999988999999999999999876666778899999999999999999999999999999999752 2
Q ss_pred CCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeChh--hHHHHHHhHHHHHHh
Q psy15223 2354 GETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKL--DFEILNEFGEELKFF 2431 (2492)
Q Consensus 2354 ~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~~--~~~~l~~~~~~L~~l 2431 (2492)
.+||+++.||+.++ .++.+++.|+.++.+|..|+++++.+|+++.|+.++++.|+|+++++ ..+.|+.+ ++|+++
T Consensus 776 ~~sv~~~~wP~~~~--~~~~l~~~~~~~~~v~~~v~~~~~~~R~~~~i~~~l~~~v~i~~~~~~~~~~~l~~~-~~l~~~ 852 (917)
T 1ffy_A 776 EESVHLADMPKVVE--VDQALLDKWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNASEFLTSF-DALHQL 852 (917)
T ss_dssp SSSGGGSCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSGGGEEEEEECCSSCCHHHHGGGC-SCHHHH
T ss_pred CCCeEecCCCCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEeCChhhHHHHHhhH-HHHHHH
Confidence 46999999999775 46778889999999999999999999999999999999999987655 66777776 789999
Q ss_pred hhcccEEEeecCCC----CceE-EEEEeCCCCCCcccceEecCCCCCCCCCCCChhhHHhhhc
Q psy15223 2432 LLTSSVSLFQIKNL----SEEC-IIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLFA 2489 (2492)
Q Consensus 2432 ~~vs~v~i~~~~~~----~~~~-v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~~~~ 2489 (2492)
++||+|++...... .++. |.|.++.+.||||||+|+++||.++++++||+||.+||.+
T Consensus 853 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~kc~rcw~~~~~~~~~~~~~~~c~rc~~~~~~ 915 (917)
T 1ffy_A 853 FIVSQVKVVDKLDDQATAYEHGDIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVKS 915 (917)
T ss_dssp TTSSEEEECSCCCTTSEEETTEEEEEEECSSEECTTTCCEESCCEEETTEEEECHHHHHHHHT
T ss_pred hcccceEEecCCcccccccccceEEEEeCCCCCCcccCCCccccccCCCCCCcCHhHHHHHHh
Confidence 99999999753211 1356 9999999999999999999999888889999999999974
No 3
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=3.8e-148 Score=1519.52 Aligned_cols=751 Identities=22% Similarity=0.385 Sum_probs=682.3
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
+++++++|++||++|++ ++|++.. +.++++|+|++|||||||.|||||++|+|++||++||+||+||+|+|+|||||
T Consensus 6 ~y~~~~~E~~~~~~W~~-~~f~~~~--~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~ 82 (862)
T 1gax_A 6 AYDPKSVEPKWAEKWAK-NPFVANP--KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDH 82 (862)
T ss_dssp SCCGGGTHHHHHHHHHH-SCCCCCT--TCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBC
T ss_pred CCChHHHHHHHHHHHHh-CCCccCc--CCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCC
Confidence 47899999999999999 9998753 45788999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHh
Q psy15223 1649 HGMPIEIQIEKLYGK------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFK 1722 (2492)
Q Consensus 1649 hGlPie~~a~k~~~~------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~ 1722 (2492)
||||||.+++|.++. ++++++|++.|++|+.++++.|++||++||+|+||+|+|+||||.|+++++|+|.+|++
T Consensus 83 ~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~ 162 (862)
T 1gax_A 83 AGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYH 162 (862)
T ss_dssp CTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999987642 57788999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEE
Q psy15223 1723 KGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQAL 1802 (2492)
Q Consensus 1723 kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai 1802 (2492)
+|||||+.++|+|||.|+|+|||+||+|++..++++||+|++.+. .+++|||||||||+||+||
T Consensus 163 kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~g~~~~v~f~~~~~----------------~~l~v~TTrPeTl~g~~av 226 (862)
T 1gax_A 163 EGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGKLYTLRYEVEGG----------------GFIEIATVRPETVFADQAI 226 (862)
T ss_dssp TSSEEEECCEEEEETTTTEEECGGGEEECCEEEEEEEEECCCSSS----------------CCCEEEESCSGGGTTCCCE
T ss_pred CCCEEecccccccCCCcCccccccccccccccceEEEEEEEecCC----------------CEEEEEeCCccccccceEE
Confidence 999999999999999999999999999999999999999998531 4899999999999999999
Q ss_pred EEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCcccc
Q psy15223 1803 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITV 1882 (2492)
Q Consensus 1803 ~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~ 1882 (2492)
||||+++ +| ++|+|++|.||++ ++.+||++++||++
T Consensus 227 av~P~~~--------------------------ry------------~~l~G~~~~~P~~------~~~ipii~~~~V~~ 262 (862)
T 1gax_A 227 AVHPEDE--------------------------RY------------RHLLGKRARIPLT------EVWIPILADPAVEK 262 (862)
T ss_dssp EECSSCC--------------------------TT------------CSCTTCCCBCTTC------CCBCCEEECTTCCT
T ss_pred EECCCcc--------------------------HH------------HHHcCCEEECCCC------CCeeeEEecccccc
Confidence 9999952 12 2799999999998 89999999999999
Q ss_pred CCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCC--CCCCCccHHhhhHHHHHHHHhcCCcceeeeecc
Q psy15223 1883 DSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTL--PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEH 1960 (2492)
Q Consensus 1883 ~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~--~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h 1960 (2492)
++|||+||++||||++||+++++||| ++++++|++|+|++++ +.|.||++++|++.|++.|++.|++++.++++|
T Consensus 263 ~~GTG~V~~~Pahd~~D~~~~~~~~L---~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h 339 (862)
T 1gax_A 263 DFGTGALKVTPAHDPLDYEIGERHGL---KPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTI 339 (862)
T ss_dssp TSSSSEEECCGGGCHHHHHHHHHTTC---CCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEE
T ss_pred CCCCcceEecCCCCchHHHHHHHcCC---CccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccc
Confidence 99999999999999999999999999 9999999999999999 999999999999999999999999999999999
Q ss_pred ccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhh--cceEecccchhHHHHhhhCCCCcccccccCCCce
Q psy15223 1961 SYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVP 2038 (2492)
Q Consensus 1961 ~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~--~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~p 2038 (2492)
+||||||||+||++++++|||+++++ ++++++++++ +++|+|++.++++.+||++++||||||||+||+|
T Consensus 340 ~~p~c~R~~~~i~~~~~~qWFv~~~~--------~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~p 411 (862)
T 1gax_A 340 ALATCSRCGTPIEYAIFPQWWLRMRP--------LAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQ 411 (862)
T ss_dssp CCEEETTTCSBCCEEECCEEEECHHH--------HHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCC
T ss_pred cCCeecCCCCeEEEEecceEEEEhHH--------HHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcc
Confidence 99999999999999999999999988 9999999995 7999999999999999999999999999999999
Q ss_pred eeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCC-CccCceecccccccccccCcchhhhccCCc---
Q psy15223 2039 IAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD-DAVNYKKSNDTLDVWFDSGITHQTVIRGSH--- 2114 (2492)
Q Consensus 2039 IP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~-~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~--- 2114 (2492)
||+|+|++|+.+.+...+. +. ... . .++. +...+.+++||||||||||++|++.+....
T Consensus 412 IP~w~~~~~~~i~v~~~~~-------l~--------~~~-~-~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~ 474 (862)
T 1gax_A 412 IPAWYCEDCQAVNVPRPER-------YL--------EDP-T-SCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETE 474 (862)
T ss_dssp CCCEEETTTCCEECCCGGG-------TT--------CCC-C-SCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCH
T ss_pred cCceecCCCCEEEEecccc-------cc--------ccc-h-hhhhcCchheecCCcccceeeccCCcchhhccCCCchH
Confidence 9999999988764332111 00 000 0 1111 223689999999999999999999886543
Q ss_pred cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHH
Q psy15223 2115 KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLW 2194 (2492)
Q Consensus 2115 ~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~ 2194 (2492)
+++++||+|+|++|+||+|+||.++++.+..+.|..||+++++||+|+|.+|+|||||+||+|+|.++|++||+|++|||
T Consensus 475 ~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ 554 (862)
T 1gax_A 475 DLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFA 554 (862)
T ss_dssp HHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHH
T ss_pred HHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHH
Confidence 23578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhc-cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccc
Q psy15223 2195 VAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYE 2273 (2492)
Q Consensus 2195 l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~ 2273 (2492)
+++ +++++|++|+++.++.+.++++++||++||+.+++.++.+. ...+...|+|++++++++++.++++|++|+
T Consensus 555 ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~-----~~~~~~~D~~il~~l~~~~~~v~~a~e~~~ 629 (862)
T 1gax_A 555 LIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAK-----EDTPTLADRFMRSRLSRGVEEITALYEALD 629 (862)
T ss_dssp HHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCC-----BCCCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc-----cccCCHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 997 58999999999999999999999999999999887765421 123678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccC
Q psy15223 2274 FHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIES 2353 (2492)
Q Consensus 2274 f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~ 2353 (2492)
|++|++.+++|+++++||||++.+|+++|++ +++++.+++++++.+++||+|||||+|||||+.|+.
T Consensus 630 f~~A~~~l~~f~~~~~~n~Yie~~k~~l~~~------~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~------- 696 (862)
T 1gax_A 630 LAQAAREVYELVWSEFCDWYLEAAKPALKAG------NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG------- 696 (862)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT------BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHcchhhhcc------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCC-------
Confidence 9999999999999999999999999999863 567889999999999999999999999999999974
Q ss_pred CCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeChhhHHHHHHhHHHHHHhhh
Q psy15223 2354 GETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLL 2433 (2492)
Q Consensus 2354 ~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~~~~~~l~~~~~~L~~l~~ 2433 (2492)
.+||+.+.||+.+ ..+..+++.|+.++ .+++.+|++|++++|+.+.+..++|. + .. +.++.+.+.|+.+++
T Consensus 697 ~~sv~~~~wP~~~--~~d~~~~~~~~~~~----~v~~~~r~~r~~~~i~~~~~~~~~v~-~-~~-~~~~~~~~~i~~~~~ 767 (862)
T 1gax_A 697 KEELALEAWPEPG--GRDEEAERAFEALK----QAVTAVRALKAEAGLPPAQEVRVYLE-G-ET-APVEENLEVFRFLSR 767 (862)
T ss_dssp CSCGGGSCCCCCC--CCCHHHHHHHHHHH----HHHHHHHHHHHHHTCCTTCCEEEEEE-E-SC-HHHHHTHHHHHHHHC
T ss_pred CCeEEecCCCCCC--cCCHHHHHHHHHHH----HHHHHHHHhhhhhcCCCCCeeEEEEe-C-hH-HHHHHHHHHHHHHhC
Confidence 2699999999977 25677777777665 47889999999999999988887765 3 33 667888889999999
Q ss_pred cccE
Q psy15223 2434 TSSV 2437 (2492)
Q Consensus 2434 vs~v 2437 (2492)
+++|
T Consensus 768 ~~~~ 771 (862)
T 1gax_A 768 ADLL 771 (862)
T ss_dssp EEEC
T ss_pred cccc
Confidence 9887
No 4
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=3e-146 Score=1500.82 Aligned_cols=727 Identities=22% Similarity=0.384 Sum_probs=661.0
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc------CCCHHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK------NLSPIE 519 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~------~~~~~e 519 (2492)
+.++++|+|++|||||||.||||||+|+|++||++||+||+||+|+|+|||||||||||.+|++.++. ++++++
T Consensus 30 ~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~ 109 (862)
T 1gax_A 30 KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREK 109 (862)
T ss_dssp TCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTH
T ss_pred CCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999987642 577889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccccccccc
Q psy15223 520 IQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE 599 (2492)
Q Consensus 520 ~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Eve 599 (2492)
|+++|++|+.++++.|++||++||+++||+|+|+||||.|+++++|+|.+|+++|||||+.++|+|||.|+|+|||+||+
T Consensus 110 f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~ 189 (862)
T 1gax_A 110 FLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVE 189 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHh
Q psy15223 600 YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNL 679 (2492)
Q Consensus 600 y~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~ 679 (2492)
|+++.++++||+|++.+. .+++||||||||||||+||||||+++
T Consensus 190 ~~e~~g~~~~v~f~~~~~----------------~~l~v~TTrPeTl~g~~avav~P~~~-------------------- 233 (862)
T 1gax_A 190 TEPTPGKLYTLRYEVEGG----------------GFIEIATVRPETVFADQAIAVHPEDE-------------------- 233 (862)
T ss_dssp ECCEEEEEEEEECCCSSS----------------CCCEEEESCSGGGTTCCCEEECSSCC--------------------
T ss_pred cccccceEEEEEEEecCC----------------CEEEEEeCCccccccceEEEECCCcc--------------------
Confidence 999999999999998541 48999999999999999999999953
Q ss_pred HHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCC
Q psy15223 680 VKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMK 759 (2492)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~ 759 (2492)
++ ++|.|++|.||+. ++.+||++++||++++|||+||+|||||++||++|++|||
T Consensus 234 ------ry------------~~l~G~~~~~P~~------~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L- 288 (862)
T 1gax_A 234 ------RY------------RHLLGKRARIPLT------EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGL- 288 (862)
T ss_dssp ------TT------------CSCTTCCCBCTTC------CCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTC-
T ss_pred ------HH------------HHHcCCEEECCCC------CCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCC-
Confidence 12 4799999999998 8999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCcccccC--CCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCC
Q psy15223 760 DSDIINPVMDDGNFISTL--PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKI 837 (2492)
Q Consensus 760 ~~~~~~~vd~~G~~~~~~--~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~ 837 (2492)
++++++|++|+|++++ |.|.||++++|++.|++.|++.|.|++.+++.|+||||||||+||++++++|||+++++
T Consensus 289 --~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~- 365 (862)
T 1gax_A 289 --KPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRP- 365 (862)
T ss_dssp --CCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHH-
T ss_pred --CccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHH-
Confidence 8889999999999999 89999999999999999999999999999999999999999999999999999999988
Q ss_pred CcchhHHHHHHHHHHhh--cceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHH
Q psy15223 838 PKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKI 915 (2492)
Q Consensus 838 ~~~~~~~~~~~~~~~i~--~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~ 915 (2492)
++++++++++ +++|+|++.++++.+||++++||||||||+||+|||+|+|++||.+.+...+.
T Consensus 366 -------~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~i~v~~~~~-------- 430 (862)
T 1gax_A 366 -------LAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPER-------- 430 (862)
T ss_dssp -------HHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCEECCCGGG--------
T ss_pred -------HHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCCEEEEecccc--------
Confidence 9999999995 69999999999999999999999999999999999999999998765322110
Q ss_pred hhcCCccccccCchhhcC-CCccCceecCCccccccccccccchhcccCcc---ccCCcCeeeeecccccchhhHHHHHH
Q psy15223 916 ELNGIEIWQNLDIKEFLG-DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK---KQLIFPADLYLEGSDQHRGWFHSSLL 991 (2492)
Q Consensus 916 ~~~g~~~w~~~~~~~~~~-~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~---~~~~~p~Dl~~~G~D~~rgwf~s~l~ 991 (2492)
+.... .. ++ ++...+++++||||||||||++|+++++++.+ ++++||+|+|++|+||+||||.++++
T Consensus 431 -------l~~~~-~~-~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~ 501 (862)
T 1gax_A 431 -------YLEDP-TS-CEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEV 501 (862)
T ss_dssp -------TTCCC-CS-CTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHH
T ss_pred -------ccccc-hh-hhhcCchheecCCcccceeeccCCcchhhccCCCchHHHHhhCCceEEecCccccccHHHHHHH
Confidence 00000 01 11 22347999999999999999999998876532 36789999999999999999999999
Q ss_pred HHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHHHHH
Q psy15223 992 TSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRR 1070 (2492)
Q Consensus 992 ~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~k 1070 (2492)
.+..+.|..||++|++|||++|.+|+|||||+||+|+|.++|++||+|++|||+++ +++++|++|+++.+++..+++++
T Consensus 502 ~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nk 581 (862)
T 1gax_A 502 SGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANK 581 (862)
T ss_dssp HHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997 58999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhh
Q psy15223 1071 IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDR 1150 (2492)
Q Consensus 1071 l~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdr 1150 (2492)
+||++||+++++.++.+. ...+...|+|++++++++++++.++|++|+|++|++.+++|+++++||+|++.+|+|
T Consensus 582 l~N~~rf~~~~~~~~~~~-----~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~ 656 (862)
T 1gax_A 582 LYNAARFVLLSREGFQAK-----EDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPA 656 (862)
T ss_dssp HHHHHHHHHHHSSSCCCC-----BCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCc-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHHcchh
Confidence 999999999988776431 134678999999999999999999999999999999999999999999999999999
Q ss_pred hccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHH
Q psy15223 1151 LYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMI 1230 (2492)
Q Consensus 1151 l~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~ 1230 (2492)
+|++ +++++++|+++|+.+++||+|||||+|||||+.|+. .+||+++.||+.+ ..+..+++.|+.
T Consensus 657 l~~~------~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~-------~~sv~~~~wP~~~--~~d~~~~~~~~~ 721 (862)
T 1gax_A 657 LKAG------NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG-------KEELALEAWPEPG--GRDEEAERAFEA 721 (862)
T ss_dssp HHTT------BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC-------CSCGGGSCCCCCC--CCCHHHHHHHHH
T ss_pred hhcc------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCC-------CCeEEecCCCCCC--cCCHHHHHHHHH
Confidence 9864 568899999999999999999999999999999974 2699999999866 246677778887
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCchhHHHHHHhHHHHHHhhhccce
Q psy15223 1231 LKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTSSV 1287 (2492)
Q Consensus 1231 ~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~~~~~~l~~~~~~L~~l~~vs~v 1287 (2492)
+++ +++.++.+|+++.|+.+.++.+.|. + .. +.++.+.+.|..++++++|
T Consensus 722 ~~~----v~~~~r~~r~~~~i~~~~~~~~~v~-~-~~-~~~~~~~~~i~~~~~~~~~ 771 (862)
T 1gax_A 722 LKQ----AVTAVRALKAEAGLPPAQEVRVYLE-G-ET-APVEENLEVFRFLSRADLL 771 (862)
T ss_dssp HHH----HHHHHHHHHHHHTCCTTCCEEEEEE-E-SC-HHHHHTHHHHHHHHCEEEC
T ss_pred HHH----HHHHHHHhhhhhcCCCCCeeEEEEe-C-hH-HHHHHHHHHHHHHhCcccc
Confidence 775 4667778999999999888887765 3 33 6778888889999988766
No 5
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=3.8e-145 Score=1508.20 Aligned_cols=787 Identities=26% Similarity=0.474 Sum_probs=687.7
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
++++++++|++||++|+++++|++..+.+.++++|++++|||||||.|||||++|+|++|+++||+||+||+|+|++|||
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D 85 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD 85 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCccccccccc
Confidence 67899999999999999999999875545678999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHH
Q psy15223 1648 CHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGII 1720 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L 1720 (2492)
|||||||.+|+|.+|. .+++++|++.|++|+.++++.|+++|++||+|+||+++|+||||.|+++++|+|.+|
T Consensus 86 ~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L 165 (821)
T 1ile_A 86 THGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNL 165 (821)
T ss_dssp CCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHH
Confidence 9999999999998764 357889999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceEEeCcccccCCCCCccccccccc--ceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhcc
Q psy15223 1721 FKKGYVYHGLKPVNWCFDCKSALAEAEIE--YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPA 1798 (2492)
Q Consensus 1721 ~~kGliyr~~~~v~wcp~~~t~Lad~Eve--y~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~ 1798 (2492)
+++|||||+.++|+|||.|+|+|||+||+ |++..++++||+|++.+.... ...+.+++|||||||||||
T Consensus 166 ~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~~~~~v~f~~~~~~~~---------~~~~~~l~v~TTrP~Tl~g 236 (821)
T 1ile_A 166 FDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVYVRFPLKEPKKL---------GLEKASLLIWTTTPWTLPG 236 (821)
T ss_dssp HHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEEEEEEEEEEEBSSGGGG---------TCSSEEEEEEESCGGGGGG
T ss_pred HHcCCeeecCcceEecCCCCCcccHhHhhcCcccccCceEEEEEEecCCccc---------CCCCCEEEEEcCCChhhhh
Confidence 99999999999999999999999999994 999999999999998653100 0135799999999999999
Q ss_pred ccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecC
Q psy15223 1799 NQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGD 1878 (2492)
Q Consensus 1799 ~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~ 1878 (2492)
|+||||||+++|++++.++ +.||+|+++++++.+. ....+.+++|++|+|+++.||+... .++.+||++++
T Consensus 237 ~~av~v~p~~~y~~~~~~~---~~~i~a~~~~~~~~~~---~~~~~~~~~G~~l~g~~~~~p~~~~---~~~~~pi~~~~ 307 (821)
T 1ile_A 237 NVAAAVHPEYTYAAFQVGD---EALILEEGLGRKLLGE---GTQVLKTFPGKALEGLPYTPPYPQA---LEKGYFVVLAD 307 (821)
T ss_dssp CCCEEECTTSCEEEEEETT---EEEEEETTHHHHHTCT---TSCEEEEECHHHHTTCBBCCSSCCC---CSSCSBEEECT
T ss_pred cEEEEECCCCceeEEEcCC---cEEEehHHHHHHHHhh---CcEEEEEechHHhcCCEEEcCCccc---CCCEEEEEecC
Confidence 9999999999999999753 7899999999988652 2223499999999999999999621 26889999999
Q ss_pred ccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeee
Q psy15223 1879 YITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMF 1958 (2492)
Q Consensus 1879 ~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~ 1958 (2492)
||++++|||+||+|||||++||++|++||| ++++++|++|+|+++ + |+|+++++|++.|++.|+++|.+++.+++
T Consensus 308 ~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l---~~~~~id~~G~~~~~-~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~~ 382 (821)
T 1ile_A 308 YVSQEDGTGIVHQAPAFGAEDLETARVYGL---PLLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESY 382 (821)
T ss_dssp TCCSSSSCSCEECCTTSCHHHHHHHHHTTC---CCCCCBCTTSBBCSG-G-GTTCBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCccCCCCcceEecCCCCHHHHHHHHHcCC---CcceeECCCCcCccc-C-cCCCCHHHHHHHHHHHHHhCCCeeeeecc
Confidence 999999999999999999999999999999 899999999999988 7 99999999999999999999999999999
Q ss_pred ccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccc-hhHHHHhhhCCCCcccccccCCCc
Q psy15223 1959 EHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG-KDRLKSMILNRPDWTISRQRHWGV 2037 (2492)
Q Consensus 1959 ~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~-~~~~~~~l~~~~DW~ISRqr~WG~ 2037 (2492)
+|+||||||||+||++++++|||+++++ +++++++++++++|+|++. ++++.+||++++||||||||+||+
T Consensus 383 ~h~~p~c~r~~~~~~~~~~~qWF~~~~~--------~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~ 454 (821)
T 1ile_A 383 LHSYPHCWRCSTPLMYYATESWFIKNTL--------FKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGT 454 (821)
T ss_dssp EEEEEBCSSSCCBCEEEECCEEEECGGG--------GHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSC
T ss_pred cccCCEecCCCCEEEEEecchhhhchHH--------HHHHHHHHhcCeEEECchhhHhHHHHHHhCCchheecccCCCCC
Confidence 9999999999999999999999999998 9999999999999999998 469999999999999999999999
Q ss_pred eeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccc---cccchh---h---hcCCCccCceecccccccccccCcchhh
Q psy15223 2038 PIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW---QNLDIK---E---FLGDDAVNYKKSNDTLDVWFDSGITHQT 2108 (2492)
Q Consensus 2038 pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w---~~~~~~---~---~~~~~~~~~~~~~dvlDvWfdSg~~~~~ 2108 (2492)
|||+|+|++|+...+. +++.++.+ .+.+.+ .+.... . -++ ++..++|++||||||||||++|++
T Consensus 455 pIP~~~~~~~~~~~vi-----~~~~~l~~-~~~~~~~~~~~l~~~~~d~~~~~~~-~g~~~~r~~dvld~WfdS~~~~~~ 527 (821)
T 1ile_A 455 PLPIWVCQACGKEEAI-----GSFQELKA-RATKPLPEPFDPHRPYVDQVELACA-CGGTMRRVPYVIDVWYDSGAMPFA 527 (821)
T ss_dssp BCCEEEESSSSCCEEC-----CSHHHHHH-HBSSCCCSSCCCSHHHHTTCEEECT-TSSEEEECSCBCCHHHHHHHHHHH
T ss_pred eeeEEEecCCCcEEee-----CcHHHHHh-hccccccchhhhccccccccccCCC-CCCchhhcccccceecccccchHh
Confidence 9999999998864321 11222211 222211 011000 0 012 235799999999999999999888
Q ss_pred hccCCc----cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhh
Q psy15223 2109 VIRGSH----KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN 2184 (2492)
Q Consensus 2109 ~~~~~~----~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~ 2184 (2492)
.+.... .++.+||+|+|++|+||+||||+++++.+.++.+..||+++++||++++.+|+|||||+||+|+|.++++
T Consensus 528 ~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~ 607 (821)
T 1ile_A 528 SLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIR 607 (821)
T ss_dssp TTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHT
T ss_pred hcCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHH
Confidence 775432 2346899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHhc-cCCCCcccccHHHHHH-HHHHHHHHHHHHHHHH--hcCCCCCC-CcccccccccchHHHHHHHHHH
Q psy15223 2185 LFGAEILRLWVAS-TDYSKDLSISNEILNR-VVETYRRIRNTLRFLL--ANTSDFNP-NINIIKISDMVEIDKYAIINIT 2259 (2492)
Q Consensus 2185 ~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~-~~~~~~kl~n~~r~~~--~~~~~~~~-~~~~~~~~~~~~~D~~il~~l~ 2259 (2492)
+||+|++|||+++ +++++|++||++.+++ +.+.+++|+|+++|+. .++.++.+ ... ....+...|+|++++++
T Consensus 608 ~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~ll~~l~ 685 (821)
T 1ile_A 608 KFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPP--PPEKRPEMDRWLLARMQ 685 (821)
T ss_dssp TTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCC--CSTTSCHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccc--ccccCCHHHHHHHHHHH
Confidence 9999999999997 4799999999999998 5889999999999864 34444443 211 12235678999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q psy15223 2260 NLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEE 2339 (2492)
Q Consensus 2260 ~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEe 2339 (2492)
++++.+.++|++|+|++|++.|++|++++++|+|++.+|+++|+... +.++++++++++++++.+++||+|||||+|||
T Consensus 686 ~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~-~~~r~~~~~~l~~~l~~~~~lLaP~~P~~aee 764 (821)
T 1ile_A 686 DLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNED-ALDREAAYATLYEALVLVATLAAPFTPFLAEV 764 (821)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTT-TSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC-cHHHHHHHHHHHHHHHHHHHHcCCccchHHHH
Confidence 99999999999999999999999999889999999999999997643 23456889999999999999999999999999
Q ss_pred HHHHcccCCccccCCC-CeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15223 2340 AWSIFSDKNFYIESGE-TIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGII 2401 (2492)
Q Consensus 2340 lw~~L~~~~~~~~~~~-sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i 2401 (2492)
||+.|+... ....+ ||+.+.||+.++.+.++++++.|+.+++ +.+.+|++|++.+|
T Consensus 765 lw~~L~~~~--~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~----~~~~~r~~r~~~~~ 821 (821)
T 1ile_A 765 LWQNLVRSV--RLEAKESVHLADWPEADPALADEALVAQMRAVLK----VVDLARAARAKSGV 821 (821)
T ss_dssp HHHHHTTTT--STTSCSSGGGSCCCCCCTTTCCHHHHHHHHHHHH----HHHHHTTCTTSCCC
T ss_pred HHHhccccc--cCCCCCceEeecCCCCCcccCCHHHHHHHHHHHH----HHHHHHHHHHHcCC
Confidence 999997530 01124 9999999998877778888888888876 44566777776653
No 6
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=2.7e-143 Score=1489.58 Aligned_cols=766 Identities=26% Similarity=0.476 Sum_probs=668.7
Q ss_pred cccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc----
Q psy15223 439 VWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK---- 513 (2492)
Q Consensus 439 ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~---- 513 (2492)
+|+... .++++++|++++|||||||.||||||+|+|++|+++||+||+||+|+|+|||||||||||.+|+|.+|.
T Consensus 26 ~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~ 105 (821)
T 1ile_A 26 IFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKR 105 (821)
T ss_dssp HHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHH
T ss_pred CcccChhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccc
Confidence 444433 346789999999999999999999999999999999999999999999999999999999999998764
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCC
Q psy15223 514 ---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCK 590 (2492)
Q Consensus 514 ---~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~ 590 (2492)
.+++++|++.|++|+.++++.|+++|++||+++||+++|+||||.|+++++|+|.+|+++|||||+.++|+|||.|+
T Consensus 106 ~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~ 185 (821)
T 1ile_A 106 EIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCG 185 (821)
T ss_dssp HHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTT
T ss_pred hHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc--ccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCC
Q psy15223 591 SALAEAEIE--YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKND 668 (2492)
Q Consensus 591 taLae~Eve--y~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~ 668 (2492)
|+|||+||+ |.++.++++||+|++.+.... ...+.+++||||||||||||+||||||+++|+.++.++
T Consensus 186 t~Lad~ev~~G~~~~~~~~~~v~f~~~~~~~~---------~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~- 255 (821)
T 1ile_A 186 TPLSSHEVALGYKEIQDPSVYVRFPLKEPKKL---------GLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGD- 255 (821)
T ss_dssp EECCHHHHHHTEEEEEEEEEEEEEEBSSGGGG---------TCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETT-
T ss_pred CcccHhHhhcCcccccCceEEEEEEecCCccc---------CCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCC-
Confidence 999999994 999999999999999753100 12368999999999999999999999999999999855
Q ss_pred CCceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHH
Q psy15223 669 PPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIE 748 (2492)
Q Consensus 669 ~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~ 748 (2492)
+.||+|+++++++.+. ...++.+++|++|+|++|.||+... .++.+||++++||++++|||+||+|||||++
T Consensus 256 --~~~i~a~~~~~~~~~~---~~~~~~~~~G~~l~g~~~~~p~~~~---~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~ 327 (821)
T 1ile_A 256 --EALILEEGLGRKLLGE---GTQVLKTFPGKALEGLPYTPPYPQA---LEKGYFVVLADYVSQEDGTGIVHQAPAFGAE 327 (821)
T ss_dssp --EEEEEETTHHHHHTCT---TSCEEEEECHHHHTTCBBCCSSCCC---CSSCSBEEECTTCCSSSSCSCEECCTTSCHH
T ss_pred --cEEEehHHHHHHHHhh---CcEEEEEechHHhcCCEEEcCCccc---CCCEEEEEecCcCccCCCCcceEecCCCCHH
Confidence 8999999999998753 3345699999999999999999511 1688999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecc
Q psy15223 749 DFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTL 828 (2492)
Q Consensus 749 D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~ 828 (2492)
||++|++||| +++++||++|+|+++ | |+|+++++|++.|++.|++.|.+++.++++|+||||||||+|||+++++
T Consensus 328 D~~~~~~~~l---~~~~~id~~G~~~~~-~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~ 402 (821)
T 1ile_A 328 DLETARVYGL---PLLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATE 402 (821)
T ss_dssp HHHHHHHTTC---CCCCCBCTTSBBCSG-G-GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECC
T ss_pred HHHHHHHcCC---CcceeECCCCcCccc-C-cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecc
Confidence 9999999999 888999999999998 7 9999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCcchhHHHHHHHHHHhhcceEecchh-hHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHH
Q psy15223 829 QWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG-KDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLEL 907 (2492)
Q Consensus 829 QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~-~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~ 907 (2492)
|||+++++ +++++++++++++|+|++. ++++.+||++++||||||||+||+|||+|+|++||+..+.
T Consensus 403 qWF~~~~~--------~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi---- 470 (821)
T 1ile_A 403 SWFIKNTL--------FKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAI---- 470 (821)
T ss_dssp EEEECGGG--------GHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEEC----
T ss_pred hhhhchHH--------HHHHHHHHhcCeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEEecCCCcEEee----
Confidence 99999998 9999999999999999998 5699999999999999999999999999999999865421
Q ss_pred HHHHHHHHhhcCCcccc---ccCch---hh-cCC-CccCceecCCccccccccccccchhcccCc----cccCCcCeeee
Q psy15223 908 IELIAKKIELNGIEIWQ---NLDIK---EF-LGD-DAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLIFPADLY 975 (2492)
Q Consensus 908 i~~~~~~~~~~g~~~w~---~~~~~---~~-~~~-~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~----~~~~~~p~Dl~ 975 (2492)
+++.++.+ .|.+.+- ++... .. +++ .+..+++++||||||||||++|++.++.+. .++++||+|+|
T Consensus 471 -~~~~~l~~-~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~ 548 (821)
T 1ile_A 471 -GSFQELKA-RATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFI 548 (821)
T ss_dssp -CSHHHHHH-HBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBE
T ss_pred -CcHHHHHh-hccccccchhhhccccccccccCCCCCCchhhcccccceecccccchHhhcCCCccchHHHhhcCCcccc
Confidence 22233322 2332210 11000 00 111 235799999999999999999888876542 22568999999
Q ss_pred ecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCccccc
Q psy15223 976 LEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDL 1054 (2492)
Q Consensus 976 ~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~ 1054 (2492)
++|+||+||||+++++.+.++.+..||++|++|||+++.+|+|||||+||+|+|.+++++||+|++|||+++ +++++|+
T Consensus 549 ~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~ 628 (821)
T 1ile_A 549 AEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADR 628 (821)
T ss_dssp EEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCE
T ss_pred cchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 4699999
Q ss_pred ccCHHHHHH-HHHHHHHHHHHHHHHh--hcCCCCCC-CcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q psy15223 1055 SISNEILNR-VVETYRRIRNTLRFLL--ANTSDFNP-NINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSK 1130 (2492)
Q Consensus 1055 ~fs~~~l~~-~~~~~~kl~n~~rf~l--~~l~~~~~-~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~ 1130 (2492)
+||++.+++ ..+.+++|+|+++|++ +++.++.+ ... ....+...|+|++++++++++++.++|++|+|++|++.
T Consensus 629 ~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~ 706 (821)
T 1ile_A 629 RFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPP--PPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARA 706 (821)
T ss_dssp ECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCC--CSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccc--ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999 5889999999999864 34555544 211 12345678999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCC-ceee
Q psy15223 1131 LQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGE-TIFT 1209 (2492)
Q Consensus 1131 l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~-SV~~ 1209 (2492)
|++|++++++|+|++..|+++|+... +..|++++++++++++.+++||+|||||+|||||+.|+... . ...+ ||++
T Consensus 707 l~~f~~~~~~n~Yl~~~k~~~~~~~~-~~~r~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~-~-~~~~~sv~~ 783 (821)
T 1ile_A 707 LRDFVVEDLSQWYVRRNRRRFWKNED-ALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSV-R-LEAKESVHL 783 (821)
T ss_dssp HHHHHHHHSSTTTHHHHHHHHHTCTT-TSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTT-S-TTSCSSGGG
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCCC-cHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHhccccc-c-CCCCCceEe
Confidence 99999889999999999999998654 33466899999999999999999999999999999997530 0 1124 9999
Q ss_pred ccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy15223 1210 QLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGI 1250 (2492)
Q Consensus 1210 ~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~ 1250 (2492)
+.||+.++...+.++++.|+.++++++.++ .+|++.+
T Consensus 784 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~r----~~r~~~~ 820 (821)
T 1ile_A 784 ADWPEADPALADEALVAQMRAVLKVVDLAR----AARAKSG 820 (821)
T ss_dssp SCCCCCCTTTCCHHHHHHHHHHHHHHHHHT----TCTTSCC
T ss_pred ecCCCCCcccCCHHHHHHHHHHHHHHHHHH----HHHHHcC
Confidence 999998766667888888999987776654 4565543
No 7
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.5e-131 Score=1380.22 Aligned_cols=775 Identities=17% Similarity=0.267 Sum_probs=639.0
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
..++++++|++||++|+++++|++..+.+.++++|++++|||||||.|||||++|+|++||++||+||+||+|+|+||||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD 81 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGGGSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCC
Confidence 35688999999999999999999865422334899999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhc------------cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccccCeeccCC--hHHHH
Q psy15223 1648 CHGMPIEIQIEKLYG------------KNLSPIEIQN--KARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD--FLNEA 1711 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~------------~~~~~~e~~~--~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d--~~y~~ 1711 (2492)
|||||||.+|++... .+++++++.+ .|++|+.++++.|++||++||+|+||+|+|.||| |.|++
T Consensus 82 ~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~ 161 (967)
T 1wz2_A 82 ITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSK 161 (967)
T ss_dssp CCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHH
T ss_pred CCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHH
Confidence 999999999886421 1567777654 5999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecc--eEEEEEeccCchhhHhhhccCCCCCCccEEEEe
Q psy15223 1712 NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF--SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIW 1789 (2492)
Q Consensus 1712 ~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~--~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~ 1789 (2492)
+++|+|.+|+++|||||+.++|+|||.|+|+|||+||+|.+..++ .++|+|++.+. +.+.+++||
T Consensus 162 ~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~-------------~~~~~l~i~ 228 (967)
T 1wz2_A 162 FIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELREN-------------GEVIYLPAA 228 (967)
T ss_dssp HHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCCEECCEEEEEECCCS-------------SSCCEEEEE
T ss_pred HHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCceeceeEEEEEEecCC-------------CCceEEEEE
Confidence 999999999999999999999999999999999999999766544 46789987532 124799999
Q ss_pred ecCcchhccccEEEEcCCCCEEEEEecC-CCCceehhhHHhHHHHHHHcCCcCceE-EEEecccccccEEeCCCCccccC
Q psy15223 1790 TSTPWTIPANQALHVHPEFDYALVHIKN-DPPLLLILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNIDIN 1867 (2492)
Q Consensus 1790 TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~-~~~~~~i~a~~~~~~~~~~~~~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~ 1867 (2492)
||||||||||+||||||+++|++++..+ ...+.+|+++++++++..+. ....+ .+++|++|+|++|.||++
T Consensus 229 TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~~~~~~~--~~~~~~~~~~G~~l~G~~~~~P~~----- 301 (967)
T 1wz2_A 229 TLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQD--REIEVIEEFKGEKLIGKYVRNPVS----- 301 (967)
T ss_dssp ESCGGGGGGCCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHSS--CEEEEEEECCSSTTSSCEEECSSS-----
T ss_pred cCCchHhhhheEEEECCCCcEEEEEecCCCcceeeehHHHHHHHHHhhc--cCcEEEEEEEchhhcCCEEECCCC-----
Confidence 9999999999999999999999998753 11268999999988875432 23344 899999999999999999
Q ss_pred CCceecEEecCccccCCCCceEEcCCCCChhhHHH----------HHHcCCCC-----CCccc-----------------
Q psy15223 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLI----------FKKQNMKD-----SDIIN----------------- 1915 (2492)
Q Consensus 1868 ~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~----------~~~~~l~~-----~~~~~----------------- 1915 (2492)
++++||++++||++++|||+||+|||||++||.+ +++|||+. -++++
T Consensus 302 -~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~ 380 (967)
T 1wz2_A 302 -GDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVN 380 (967)
T ss_dssp -SCEEEEEECSSCCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTT
T ss_pred -CCceEEEecccccCCCCcccEEeecCCCHHHHHHHHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhh
Confidence 8899999999999999999999999999999985 57888852 01333
Q ss_pred ------ccCC----------------CCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEE
Q psy15223 1916 ------PVMD----------------DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPII 1973 (2492)
Q Consensus 1916 ------~vd~----------------~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi 1973 (2492)
++|+ +|+|+ +++|+|++|++|++.|++.|+++|.++..+++.| ||+|||||+|++
T Consensus 381 ~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~--~g~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~i 457 (967)
T 1wz2_A 381 KLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAV 457 (967)
T ss_dssp TSSSCCCSSCTTHHHHTTHHHHHHHHSCBCC--SSSSCSSBHHHHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBCE
T ss_pred hccCCCccchHHHHHHHHHhhhccccCceEe--ccCcCCcCHHHHHHHHHHHHHhCCCceEEEecCC-CceECCCCCEEE
Confidence 3343 78888 7899999999999999999999999998776655 899999999999
Q ss_pred Ee-ecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeE---EEECCCCc
Q psy15223 1974 YR-TTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAF---FIHKKSGK 2049 (2492)
Q Consensus 1974 ~~-~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~---~~~~~~~~ 2049 (2492)
++ +++|||+++++. .||+++++++++++|+|+++++++.+|+++++||||||||+||+|||+ |.++.
T Consensus 458 ~~~~~~qWFi~~~~~------~~k~~~l~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~--- 528 (967)
T 1wz2_A 458 IKIIHDQWFIDYGNP------EWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIES--- 528 (967)
T ss_dssp ECCCSSCEEEESCCT------THHHHHHHHHTTSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECH---
T ss_pred EeccCCccceecCch------HHHHHHHHhhhccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCccccccc---
Confidence 99 699999999851 299999999999999999999999999999999999999999999995 22221
Q ss_pred ccCCcHHH-HHHHHHHHh----hcCcccccccchhhhcCCC-----ccCceecccccccccccCcchhhhccCCccccCC
Q psy15223 2050 LHPKTLEL-IELIAKKIE----LNGIEIWQNLDIKEFLGDD-----AVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI 2119 (2492)
Q Consensus 2050 ~~~~~~~~-~~~i~~~~~----~~g~~~w~~~~~~~~~~~~-----~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~ 2119 (2492)
....+.+. .+.++..+. ..|.+ ++++.++- ...+.+ .+++|+|++||+++..+.+.+.++++|
T Consensus 529 ~~ds~iYv~~~~~~~~~~~~~~~~g~~------~~~l~~~~~d~~~~~~~~~-g~~~~~~~~sG~~~~~~~~~~~~~~~w 601 (967)
T 1wz2_A 529 LSDSTIYMAYYTISRHINKLRQEGKLD------PEKLTPEFFDYIFLEEFSE-DKEKELEKKTGIPAEIIHEMKEEFEYW 601 (967)
T ss_dssp HHHTTSTHHHHHHHHHHHHHHHTTCCC------GGGCCHHHHHHTTTSCCCH-HHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCceEeehhhhhhHHHHHHHhcCCC------hHHcCcccceeeccCcccc-CccccchhhcCCCHHHHhhhHHHHHhh
Confidence 10011111 111222211 22211 11111100 000111 256677778888766555444445778
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccc-cEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHh-c
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-S 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pf-k~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~-s 2197 (2492)
||+|+|++|+||+++|+..+++.+.++++..|| +++++||||++ +|+|||||+||+|+|.+++++||+|++||||+ +
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~ 680 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSL 680 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CCEEccccccCCCCHHHHHHHhChHHHHHHHHhC
Confidence 999999999999999988999999999988777 99999999997 89999999999999999999999999999998 5
Q ss_pred cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHH
Q psy15223 2198 TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMI 2277 (2492)
Q Consensus 2198 ~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a 2277 (2492)
+++++|++|+++.++.+.+.++|+||+++++.++. .+. ...+...|+|+++++++++++++++|++|+|++|
T Consensus 681 ~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~---~~~-----~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A 752 (967)
T 1wz2_A 681 AEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE---VKG-----NVELKDIDRWMLHRLNKAIKETTNALEEFRTRTA 752 (967)
T ss_dssp CCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSSC---CCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcCC---CCC-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 78999999999999999999999999999986531 111 1235678999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCe
Q psy15223 2278 VSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETI 2357 (2492)
Q Consensus 2278 ~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV 2357 (2492)
+..++.++++. +|+|++.+|++ .+++++++++++++.+++||+|||||+|||||+.|+.. +||
T Consensus 753 ~~~~~~~l~~~-~n~Yi~~~k~~---------~~~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~~~-------~sv 815 (967)
T 1wz2_A 753 VQWAFYSIMND-LRWYLRRTEGR---------DDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGGE-------GFV 815 (967)
T ss_dssp HHHHTHHHHHH-HHHHHHHTTTC---------CCHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSSCC-------SCG
T ss_pred HHHHHHHHHHH-HHHHHHhccch---------hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCC-------Cce
Confidence 99887666554 68999988752 13478899999999999999999999999999999743 699
Q ss_pred eeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeC
Q psy15223 2358 FTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKIN 2414 (2492)
Q Consensus 2358 ~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~ 2414 (2492)
+.+.||+.++.+.+++++..|+.+++++. .++++|...+++. +..++|+++
T Consensus 816 ~~~~wP~~~~~~~d~~~~~~~~~~~~~~~----~vr~~~~~~~~~~--p~~~~i~~~ 866 (967)
T 1wz2_A 816 SLAKWPEPVEEWWNETIEAEEEFIRSVME----DIKEIIEVAKIEN--AKRAYIYTA 866 (967)
T ss_dssp GGSCCCCCCSSCCCHHHHHHHHHHHHHHH----HHHHHHHTSCCCC--SBEEEECCC
T ss_pred eccCCCCCCcccCCHHHHHHHHHHHHHHH----HHHHHHHHhCCCC--CCeEEEEEC
Confidence 99999998877778888888988877554 4556676676622 366777654
No 8
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.9e-128 Score=1354.66 Aligned_cols=749 Identities=17% Similarity=0.254 Sum_probs=619.8
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhC------------cCC
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG------------KNL 515 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~------------~~~ 515 (2492)
++++|++++|||||||.|||||++|+|++||++||+||+||+|+|+|||||||||||..|++... .++
T Consensus 32 ~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi 111 (967)
T 1wz2_A 32 KEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKV 111 (967)
T ss_dssp GGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCC
T ss_pred CCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCC
Confidence 34899999999999999999999999999999999999999999999999999999999886421 156
Q ss_pred CHHHHHH--HHHHHHHHHHHHHHHHHHHccccccccCeeecCC--hHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCc
Q psy15223 516 SPIEIQN--KARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD--FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKS 591 (2492)
Q Consensus 516 ~~~e~~~--~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d--~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~t 591 (2492)
+.+++.+ .|++|+.++++.|++||+|||+++||+|+|.||| |.|+++++|+|.+|+++|||||+.+||+|||.|+|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T 191 (967)
T 1wz2_A 112 PEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGT 191 (967)
T ss_dssp CHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCC
Confidence 6776653 6999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ccccccccccceecc--EEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecC-C
Q psy15223 592 ALAEAEIEYKKKYDF--SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKN-D 668 (2492)
Q Consensus 592 aLae~Evey~~~~~~--s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~-~ 668 (2492)
+|||+||+|.+..++ .++|+|++.+. +.+.+++||||||||||||+||||||+++|++++..+ .
T Consensus 192 ~Lad~Ev~~~~~~~~~~~~~v~f~~~~~-------------~~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~ 258 (967)
T 1wz2_A 192 PLGDHDLMEGEDVPILDYIIIKFELREN-------------GEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKD 258 (967)
T ss_dssp BCCSSSCSSCCCCCEECCEEEEEECCCS-------------SSCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSS
T ss_pred CcchhhhccCCCceeceeEEEEEEecCC-------------CCceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCCC
Confidence 999999999765544 47799988542 1247999999999999999999999999999998743 1
Q ss_pred CCceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHH
Q psy15223 669 PPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIE 748 (2492)
Q Consensus 669 ~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~ 748 (2492)
.++.+|+|+++++++..+. .....+.+++|++|+|++|.||+. ++++||++++||++++|||+||+|||||++
T Consensus 259 ~~~~~i~a~~~~~~~~~~~-~~~~~~~~~~G~~l~G~~~~~P~~------~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~ 331 (967)
T 1wz2_A 259 KEETWIVSKEAAYKLSFQD-REIEVIEEFKGEKLIGKYVRNPVS------GDEVIILPAEFVDPDNATGVVMSVPAHAPF 331 (967)
T ss_dssp CEEEEEEEHHHHHHHHHSS-CEEEEEEECCSSTTSSCEEECSSS------SCEEEEEECSSCCSSSTTSCEEECTTSCTT
T ss_pred cceeeehHHHHHHHHHhhc-cCcEEEEEEEchhhcCCEEECCCC------CCceEEEecccccCCCCcccEEeecCCCHH
Confidence 2368999999999886542 122344899999999999999998 889999999999999999999999999999
Q ss_pred HHHH----------HHHcCCCC-----CCcccc-----------------------cCC----------------CCccc
Q psy15223 749 DFLI----------FKKQNMKD-----SDIINP-----------------------VMD----------------DGNFI 774 (2492)
Q Consensus 749 D~~~----------~~~~~l~~-----~~~~~~-----------------------vd~----------------~G~~~ 774 (2492)
||.+ |++|||+. -+++++ +|+ +|+|+
T Consensus 332 Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~ 411 (967)
T 1wz2_A 332 DHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK 411 (967)
T ss_dssp TTTTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCC
T ss_pred HHHHHHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEe
Confidence 9986 57889852 113333 343 78888
Q ss_pred ccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEe-ecccceeecCCCCcchhHHHHHHHHHHh
Q psy15223 775 STLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYR-TTLQWFINMDKIPKNEKKSLRESAITAI 853 (2492)
Q Consensus 775 ~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r-~t~QWFi~~~~~~~~~~~~~~~~~~~~i 853 (2492)
+|+|+|+++++|++.|++.|++.|.++..+++.| ||+|||||+|+|++ +++|||+++++ ..+|+++++++
T Consensus 412 --~g~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~i~~~~~~qWFi~~~~------~~~k~~~l~~~ 482 (967)
T 1wz2_A 412 --VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGN------PEWKEKARKAL 482 (967)
T ss_dssp --SSSSCSSBHHHHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBCEECCCSSCEEEESCC------TTHHHHHHHHH
T ss_pred --ccCcCCcCHHHHHHHHHHHHHhCCCceEEEecCC-CceECCCCCEEEEeccCCccceecCc------hHHHHHHHHhh
Confidence 7899999999999999999999999998766655 89999999999999 69999999985 12999999999
Q ss_pred hcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeE---EEECC--CCccccCcHHHHHHHHHHHh-hcCCccccccC
Q psy15223 854 NKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAF---FIHKK--SGKLHPKTLELIELIAKKIE-LNGIEIWQNLD 927 (2492)
Q Consensus 854 ~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~---~~~~~--~~~~~~~~~~~i~~~~~~~~-~~g~~~w~~~~ 927 (2492)
++++|+|+++++++.+|+++++||||||||+||+|||+ |.++. ..... .-...+.+..+.+. ..|. +
T Consensus 483 ~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iY-v~~~~~~~~~~~~~~~~g~------~ 555 (967)
T 1wz2_A 483 ERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIY-MAYYTISRHINKLRQEGKL------D 555 (967)
T ss_dssp TTSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECHHHHTTST-HHHHHHHHHHHHHHHTTCC------C
T ss_pred hccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCcccccccCCCCceE-eehhhhhhHHHHHHHhcCC------C
Confidence 99999999999999999999999999999999999995 23321 00111 00112222222111 2232 1
Q ss_pred chhhcCCC-----ccCceecCCccccccccccccchhcccCccccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCc
Q psy15223 928 IKEFLGDD-----AVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY 1002 (2492)
Q Consensus 928 ~~~~~~~~-----~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~ 1002 (2492)
++++.++. ...+.+ .++.|+||+||+++..+.+.+.++++|||+|+|++|+||+++|+..+++.+.++.+..||
T Consensus 556 ~~~l~~~~~d~~~~~~~~~-g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~ 634 (967)
T 1wz2_A 556 PEKLTPEFFDYIFLEEFSE-DKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHW 634 (967)
T ss_dssp GGGCCHHHHHHTTTSCCCH-HHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTS
T ss_pred hHHcCcccceeeccCcccc-CccccchhhcCCCHHHHhhhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHHHHcCcccc
Confidence 22221100 001112 256778889998776554433344688999999999999999988889999999988787
Q ss_pred -eEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhh-ccCcccccccCHHHHHHHHHHHHHHHHHHHHHhh
Q psy15223 1003 -KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-STDYSKDLSISNEILNRVVETYRRIRNTLRFLLA 1080 (2492)
Q Consensus 1003 -k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~-s~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~ 1080 (2492)
+.+++|||+++ +|+|||||+||+|+|.+++++||+|++|||++ ++++++|++|+++.++.+.++++|++|+++++++
T Consensus 635 pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~ 713 (967)
T 1wz2_A 635 PKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAE 713 (967)
T ss_dssp CCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cceEEEeeEEee-CCEEccccccCCCCHHHHHHHhChHHHHHHHHhCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999997 89999999999999999999999999999997 5889999999999999999999999999999876
Q ss_pred cCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHH
Q psy15223 1081 NTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHA 1160 (2492)
Q Consensus 1081 ~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~ 1160 (2492)
+. .+. ...+...|+|++++++++++++.++|++|+|++|+..++.|++++ +|+|++.+|++ .
T Consensus 714 ~~---~~~-----~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~-~n~Yi~~~k~~---------~ 775 (967)
T 1wz2_A 714 YE---VKG-----NVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMND-LRWYLRRTEGR---------D 775 (967)
T ss_dssp SC---CCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHH-HHHHHHHTTTC---------C
T ss_pred CC---CCC-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHhccch---------h
Confidence 41 111 123567899999999999999999999999999999887666554 58999998853 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHH
Q psy15223 1161 RRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQ 1240 (2492)
Q Consensus 1161 r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~ 1240 (2492)
+++++++|+++|+.+++||+|||||+|||||+.|+.. +||+++.||+.++...+..+++.|+.++++++.+++
T Consensus 776 ~~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~~~-------~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~~~~vr~ 848 (967)
T 1wz2_A 776 DEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGGE-------GFVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIKE 848 (967)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSSCC-------SCGGGSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCC-------CceeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999743 699999999987666678888999999988887775
Q ss_pred HHHHHHhhCCCCCCcceEEEEEeCc
Q psy15223 1241 KLEKIRSTGIIGSSLQAEIILKINK 1265 (2492)
Q Consensus 1241 ~le~~R~~k~i~~s~~a~v~i~~~~ 1265 (2492)
+|....++.+ ..++|.+.+
T Consensus 849 ----~~~~~~~~~p--~~~~i~~~~ 867 (967)
T 1wz2_A 849 ----IIEVAKIENA--KRAYIYTAE 867 (967)
T ss_dssp ----HHHTSCCCCS--BEEEECCCT
T ss_pred ----HHHHhCCCCC--CeEEEEECC
Confidence 4555555222 667776543
No 9
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.6e-120 Score=1258.58 Aligned_cols=718 Identities=18% Similarity=0.289 Sum_probs=591.6
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
+.++++++|++||++|+++++|++..+.+.++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|+||||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D 81 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCchhcCCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccC
Confidence 46789999999999999999999865544567899999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhc------------cCCCHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccccCeeccCC--hHHHH
Q psy15223 1648 CHGMPIEIQIEKLYG------------KNLSPIEIQ--NKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD--FLNEA 1711 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~------------~~~~~~e~~--~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d--~~y~~ 1711 (2492)
|||+|||..|++... .++++.++. ..|++|+.++.+.|+++|++||+++||+++|+|+| |.|++
T Consensus 82 ~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~ 161 (810)
T 1wkb_A 82 ITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSK 161 (810)
T ss_dssp CCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHH
T ss_pred CCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHH
Confidence 999999999876421 145555553 36899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecce--EEEEEeccCchhhHhhhccCCCCCCccEEEEe
Q psy15223 1712 NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS--IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIW 1789 (2492)
Q Consensus 1712 ~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~--~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~ 1789 (2492)
+++|+|.+|+++|+||++.++|+|||.|+|+|||+||+|++..+++ ++|+|++.+. +.+.+++||
T Consensus 162 ~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~-------------~~~~~l~v~ 228 (810)
T 1wkb_A 162 FIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELREN-------------GEVIYLPAA 228 (810)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSS-------------CSCCEEEEE
T ss_pred HHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCccceeEEEEEEccCC-------------CCceEEEEE
Confidence 9999999999999999999999999999999999999998765555 4588887542 124799999
Q ss_pred ecCcchhccccEEEEcCCCCEEEEEecC-CCCceehhhHHhHHHHHHHcCCcCceE-EEEecccccccEEeCCCCccccC
Q psy15223 1790 TSTPWTIPANQALHVHPEFDYALVHIKN-DPPLLLILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNIDIN 1867 (2492)
Q Consensus 1790 TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~-~~~~~~i~a~~~~~~~~~~~~~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~ 1867 (2492)
||||||||||+||||||+++|++++..+ ...+.+|+++++++++... .....+ .+++|.+|+|++|.||++
T Consensus 229 TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~G~~l~g~~~~~P~~----- 301 (810)
T 1wkb_A 229 TLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQ--DREIEVIEEFKGEKLIGKYVRNPVS----- 301 (810)
T ss_dssp ESCGGGGGGCCEEEECTTSCEEEEEEEETTEEEEEEEEHHHHHHHTTS--SCEEEEEEECTTTTTTTCEEECSSS-----
T ss_pred cCCchHhhhhhEEEECCCCcEEEEEecCCCcceeeeeHHHHHHHHHhh--hcceEEEEEEEchhhcCCEEECCCC-----
Confidence 9999999999999999999999998742 1126789998888776322 222333 899999999999999998
Q ss_pred CCceecEEecCccccCCCCceEEcCCCCChhhHHH----------HHHcCCCC-----CCccccc---------------
Q psy15223 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLI----------FKKQNMKD-----SDIINPV--------------- 1917 (2492)
Q Consensus 1868 ~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~----------~~~~~l~~-----~~~~~~v--------------- 1917 (2492)
++++||++++||++++|||+||+|||||++||++ |++|||+. -++++++
T Consensus 302 -~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~ 380 (810)
T 1wkb_A 302 -GDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVN 380 (810)
T ss_dssp -CCEEEEEECTTSCTTSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSG
T ss_pred -CCeeEEEecCcccCCCCceeEEeCCCCCHHHHHHHHhhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhh
Confidence 8999999999999999999999999999999986 47888841 0133333
Q ss_pred --------CC----------------CCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEE
Q psy15223 1918 --------MD----------------DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPII 1973 (2492)
Q Consensus 1918 --------d~----------------~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi 1973 (2492)
|+ +|+|+ +++|.|+.+++|++.|++.|+++|.+...+++.| +|+|||||+|++
T Consensus 381 ~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~--~g~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~vi 457 (810)
T 1wkb_A 381 KLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAV 457 (810)
T ss_dssp GGTSCCCTTCSCTHHHHHHHHHHHHHSCEEC--SGGGTTEEHHHHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBCE
T ss_pred hccCCCcchhhhhhhhhhhhhhccccCceEe--ccCcCCeEHHHhHHHHHHHHHhCCCeeeEEecCC-CCcCCCCCCEEE
Confidence 32 68887 7889999999999999999999999998888776 799999999999
Q ss_pred Ee-ecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeE---EEECCCCc
Q psy15223 1974 YR-TTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAF---FIHKKSGK 2049 (2492)
Q Consensus 1974 ~~-~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~---~~~~~~~~ 2049 (2492)
++ +++|||+++++ ..+++++++++++++|+|+++++++.+|+++++||||||||+||+|||+ |.++..
T Consensus 458 ~~~~~~qwF~~~~~------~~~~~~~l~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~-- 529 (810)
T 1wkb_A 458 IKIIHDQWFIDYGN------PEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESL-- 529 (810)
T ss_dssp EEEEEEEEEECTTC------HHHHHHHHHHHHTSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTT--
T ss_pred EEecCCceeEecCh------HHHHHHHHhhhcccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcceecccC--
Confidence 99 79999999986 2399999999999999999999999999999999999999999999995 334321
Q ss_pred ccCCcHHH-HHHHHHHHh----hcCcccccccchhhhcCCC-----ccCceecccccccccccCcchhhhccCCccccCC
Q psy15223 2050 LHPKTLEL-IELIAKKIE----LNGIEIWQNLDIKEFLGDD-----AVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI 2119 (2492)
Q Consensus 2050 ~~~~~~~~-~~~i~~~~~----~~g~~~w~~~~~~~~~~~~-----~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~ 2119 (2492)
...+.+. .+.++..+. ..|.+ ++++.++- ...+.+ .+++|+||+||+++..+.+.+.++++|
T Consensus 530 -~~~~iYv~~~~~~~~~~~~~~~~~~~------~~~l~~~~~d~~~~~~~~~-g~~~~~~~~sg~~~~~~~~~~~~~~~~ 601 (810)
T 1wkb_A 530 -SDSTIYMAYYTISRHINKLRQEGKLD------PEKLTPEFFDYIFLEEFSE-DKEKELEKKTGIPAEIIHEMKEEFEYW 601 (810)
T ss_dssp -TSSSSHHHHHHHHHHHHHHHHTTCCC------GGGCCHHHHHHHHHSCCCH-HHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred -CCCceeeehhhhHHHHHHhHhhcCCC------HHHcCccceeeeecccccc-CccccchhhhCCCHHHHHhhHHHHHhh
Confidence 1111111 112222221 22211 11111100 000111 256777888998765443333334678
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccc-cEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHh-c
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-S 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pf-k~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~-s 2197 (2492)
||+|+|++|+||+++|+..+++.+.++.+..|| +++++||||++ +|+|||||+||+|+|.+++++||+|++|||++ +
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~ 680 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSL 680 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHH
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhc
Confidence 999999999999999988889999998887777 89999999996 89999999999999999999999999999998 5
Q ss_pred cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHH
Q psy15223 2198 TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMI 2277 (2492)
Q Consensus 2198 ~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a 2277 (2492)
+++++|++|+++.++.+.+.++|++|+++++.+.. .+. ...+...|+|++++++++++.+.++|++|+|++|
T Consensus 681 ~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~---~~~-----~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a 752 (810)
T 1wkb_A 681 AEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE---VKG-----NVELKDIDRWMLHRLNKAIKETTNALEEFRTRTA 752 (810)
T ss_dssp CCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTCC---CCS-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcc---Ccc-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 88999999999999999999999999999886531 111 1235678999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHH-HHHHHHHHHHHHHHHhccchHHHHHHHHHcc
Q psy15223 2278 VSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSA-QTSIWHINQSLLRLISPILSFTSEEAWSIFS 2345 (2492)
Q Consensus 2278 ~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~-~~~l~~il~~l~~lLaPi~P~~aEelw~~L~ 2345 (2492)
+..++.++++. +|+|++..|++ + + ++ +++++++++.+++||+|||||+|||||+.|+
T Consensus 753 ~~~~~~~l~~~-~n~yi~~~k~~------~---~-~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 753 VQWAFYSIMND-LRWYLRRTEGR------D---D-EAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp HHHHTHHHHHH-HHHHHHHTTTC------C---C-HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-HHHHHHHhcCc------c---h-hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 99775444444 68999988752 1 1 34 7899999999999999999999999999884
No 10
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=3e-119 Score=1241.08 Aligned_cols=704 Identities=20% Similarity=0.288 Sum_probs=537.6
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
++++++++|++||++|+++++|++.. .+.++++|++++|||||||.|||||++|++++|+++||+||+||+|+|++|||
T Consensus 2 ~~y~~~~iE~kw~~~W~~~~~f~~~~-~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D 80 (878)
T 2v0c_A 2 EKYNPHAIEAKWQRFWEEKGFMKAKD-LPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWD 80 (878)
T ss_dssp CCCCCTTHHHHHHHHHHHHTTTCCCS-CCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBC
T ss_pred CCCCHHHHHHHHHHHHHHcCCcccCc-ccCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccC
Confidence 36899999999999999999998754 24567899999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceE
Q psy15223 1648 CHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 1727 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliy 1727 (2492)
|||+|||.+|++. ++++. +|+.++++.|++||++||+++||+++|.|+||.|+++++|+|.+|+++|+||
T Consensus 81 ~~Glpie~~a~k~---g~~~~-------~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY 150 (878)
T 2v0c_A 81 AFGLPAENAALKF---GVHPK-------DWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAY 150 (878)
T ss_dssp CSSHHHHHHHHHT---TCCHH-------HHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred cccHHHHHHHHHc---CCCHH-------HHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEE
Confidence 9999999999886 67764 4899999999999999999999999999999999999999999999999999
Q ss_pred EeCcccccCCCCCcccccccccceee-e-cceEEEE-------EeccCch-hhH-----------------hhhccCC--
Q psy15223 1728 HGLKPVNWCFDCKSALAEAEIEYKKK-Y-DFSIYVG-------FSFSEPE-KIK-----------------SIFNLKN-- 1778 (2492)
Q Consensus 1728 r~~~~v~wcp~~~t~Lad~Evey~~~-~-~~~~yv~-------f~~~~~~-~~~-----------------~~~~~~~-- 1778 (2492)
++.++|+|||.|+|+|||+||++... . +.+.+++ |++.+.. .+. ++++.+.
T Consensus 151 ~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g~ 230 (878)
T 2v0c_A 151 RAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGA 230 (878)
T ss_dssp EEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEEE
T ss_pred EcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhccccCc
Confidence 99999999999999999999986431 1 3222222 2332210 000 1111000
Q ss_pred -----CCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCc-eEEEEecccc
Q psy15223 1779 -----LPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGN-IIGICKGIKL 1852 (2492)
Q Consensus 1779 -----~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~-~v~~~~G~~l 1852 (2492)
..+.+.+++||||||||||||+||||||+++|+...+++ +....+++.+++..++...+.. ...+++|. |
T Consensus 231 ~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~ 306 (878)
T 2v0c_A 231 EILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAP---EKREEVLAYVEAAKRKTEIERQAEGREKTGV-F 306 (878)
T ss_dssp EEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCG---GGHHHHHHHHHHHHTSCHHHHHCSSSCCCCE-E
T ss_pred eEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccc---hhHHHHHHHHHHHhhhhhhhhhhccceeeeE-e
Confidence 012357899999999999999999999999998665432 2233334444433222111110 12567888 8
Q ss_pred cccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCC---------CCcc
Q psy15223 1853 SKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD---------DGNF 1923 (2492)
Q Consensus 1853 ~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~---------~G~~ 1923 (2492)
.|+++.||++ ++++||+.++||++++|||+||+|||||++||++|++||| +++++||. +|.|
T Consensus 307 ~g~~~~~P~~------~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L---~i~~vi~~~~~~~~~~~~~~~ 377 (878)
T 2v0c_A 307 LGAYALNPAT------GERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL---PIKKVIERPGEPLPEPLERAY 377 (878)
T ss_dssp EEEEEECTTT------CCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTC---CCCCCEECSSSCCCSSCSSCC
T ss_pred cCcEEECCCC------CCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCC---CceeeeCCCCccccccccccc
Confidence 9999999998 8999999999999999999999999999999999999999 77777764 2345
Q ss_pred cc-----CCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1924 IS-----TLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1924 ~~-----~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
++ +++.|.|+++++|++.|++.|+++|...+ ++.|
T Consensus 378 ~~~g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~~----------------~v~~------------------------ 417 (878)
T 2v0c_A 378 EEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKG----------------RVTY------------------------ 417 (878)
T ss_dssp CSCCEECSSGGGTTCBHHHHHHHHHHHHHHHTSEEE----------------EEEE------------------------
T ss_pred cCCeeEecCCCCCCcCHHHHHHHHHHHHHHCCCCCC----------------ceEE------------------------
Confidence 44 35789999999999999999999997311 1111
Q ss_pred HHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHH---HHH--HhhcCccc-
Q psy15223 1999 AITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELI---AKK--IELNGIEI- 2072 (2492)
Q Consensus 1999 ~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i---~~~--~~~~g~~~- 2072 (2492)
+++|||||||||||+|||+|+|++|+.+++..+++...+ .+. +...|.++
T Consensus 418 ------------------------rlrDW~ISRQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl 473 (878)
T 2v0c_A 418 ------------------------RLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPL 473 (878)
T ss_dssp ------------------------SCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGG
T ss_pred ------------------------ecccchhhcccccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChh
Confidence 256999999999999999999999987643333221100 111 11223222
Q ss_pred -----ccccchhhhcCCCccCceecccccccccccCcchhhhccCCc--------cccCCcCceeeecccchh------h
Q psy15223 2073 -----WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH--------KKQLIFPADLYLEGSDQH------R 2133 (2492)
Q Consensus 2073 -----w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~--------~~~~~~P~Dl~~~G~D~~------r 2133 (2492)
|.+.. +|.++..++|++|||||||||||++..+....+ ..++|||+|+|++|+||+ +
T Consensus 474 ~~~~~~~~~~----cp~cg~~~~retDtmDtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~ 549 (878)
T 2v0c_A 474 EAHPEFYETT----CPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYS 549 (878)
T ss_dssp GGCHHHHEEE----CTTTCSEEEECCCEECHHHHHTSHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHH
T ss_pred hhhHhhcCCc----CCCCCCcceeccccccccccccchhhhccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHH
Confidence 22221 233456799999999999999977766543322 125789999999999994 4
Q ss_pred hhHHHHHHHHHHhcCCccccEEEEeeeEEcC----------------------------------------------CC-
Q psy15223 2134 GWFHSSLLTSIILNKSAPYKALLTHGFVVDS----------------------------------------------KG- 2166 (2492)
Q Consensus 2134 ~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~----------------------------------------------~G- 2166 (2492)
+||+++|....++.+++||++|++||||+|. +|
T Consensus 550 r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 629 (878)
T 2v0c_A 550 RFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGT 629 (878)
T ss_dssp HHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSS
T ss_pred HHHHHHHHHhhcccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeeccCCCC
Confidence 5666655544446789999999999999984 99
Q ss_pred ------ceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q psy15223 2167 ------KKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNI 2239 (2492)
Q Consensus 2167 ------~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~ 2239 (2492)
+|||||+||+|+|.++|++||||++|||+++ +++++|++||++.++++.++++|+||++++....+.. . .
T Consensus 630 ~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~-~--~ 706 (878)
T 2v0c_A 630 LHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLE-T--S 706 (878)
T ss_dssp EEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHT-C--C
T ss_pred chhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHhcccc-c--c
Confidence 9999999999999999999999999999997 8999999999999999999999999999876654210 0 0
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHH
Q psy15223 2240 NIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIW 2319 (2492)
Q Consensus 2240 ~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~ 2319 (2492)
...+...+...|+|+++++++++++++++|++|+|++|++.+++|++ ++++ |.+. . . ++++++
T Consensus 707 ~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~-~l~k-~~~~-------~--~------~~~~l~ 769 (878)
T 2v0c_A 707 GVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLN-ALYE-YRKD-------R--P------VTPVYR 769 (878)
T ss_dssp CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHH-HHHH-------C--C------SCHHHH
T ss_pred cccCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HHhh-hccc-------c--h------hHHHHH
Confidence 11122345789999999999999999999999999999999999995 6654 4321 1 1 125799
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15223 2320 HINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEK 2394 (2492)
Q Consensus 2320 ~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~ 2394 (2492)
++++.+++||+|||||+|||||+.|+ . +||+.++||+.++.... ++.++.++.++..+...++.
T Consensus 770 ~~l~~l~~LLaPf~P~~aEElw~~Lg-~-------~sv~~~~wP~~d~~~l~---~~~~~~~vqvngkvR~~i~v 833 (878)
T 2v0c_A 770 TAIRYYLQMLFPFAPHLAEELWHWFW-P-------DSLFEAGWPELDEKALE---KDVVEVAVQVNGAVAGTIHI 833 (878)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHHHHHC-S-------SCGGGSCCCCCCGGGGC-----------------------
T ss_pred HHHHHHHHHHcccchHHHHHHHHHcC-C-------CceeecCCCCCCHHHHH---HHHHHHHHhhHHHHHHHccc
Confidence 99999999999999999999999997 3 58999999997764322 34566666665555444433
No 11
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.3e-117 Score=1231.53 Aligned_cols=699 Identities=18% Similarity=0.272 Sum_probs=574.6
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhC----
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG---- 512 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~---- 512 (2492)
.+|+... .++++++|+|++|||||||.||||||+|+|++|+++||+||+||+|+|+|||||||+|||..|++...
T Consensus 21 ~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~ 100 (810)
T 1wkb_A 21 KIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPK 100 (810)
T ss_dssp TTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHH
T ss_pred CCcccCchhcCCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCch
Confidence 3454443 33457899999999999999999999999999999999999999999999999999999999876421
Q ss_pred --------cCCCHHHHH--HHHHHHHHHHHHHHHHHHHHccccccccCeeecCC--hHHHHHHHHHHHHHHHcCCeEEeC
Q psy15223 513 --------KNLSPIEIQ--NKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD--FLNEANELRAFGIIFKKGYVYHGL 580 (2492)
Q Consensus 513 --------~~~~~~e~~--~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d--~~y~~~~~~~f~~l~~kGliyr~~ 580 (2492)
.+++..++. ..|++|+.++.+.|+++|++||+++||+++|+||| |.|++.++++|.+|+++|+||++.
T Consensus 101 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~ 180 (810)
T 1wkb_A 101 TIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGA 180 (810)
T ss_dssp HHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECC
Confidence 145555553 36899999999999999999999999999999999 999999999999999999999999
Q ss_pred cccccCCCCCcccccccccccceeccE--EEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCC
Q psy15223 581 KPVNWCFDCKSALAEAEIEYKKKYDFS--IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEF 658 (2492)
Q Consensus 581 ~pv~w~p~~~taLae~Evey~~~~~~s--~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~ 658 (2492)
++|+|||.|+|+|||+||+|.+..+++ ++|+|++.+. ..+.+++||||||||||||+||||||++
T Consensus 181 ~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~-------------~~~~~l~v~TTrP~Tl~g~~av~v~P~~ 247 (810)
T 1wkb_A 181 HRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELREN-------------GEVIYLPAATLRPETVYGVTNMWVNPNA 247 (810)
T ss_dssp EEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSS-------------CSCCEEEEEESCGGGGGGCCEEEECTTS
T ss_pred eeeeccCCcCCCccHHHHhcCCCCccceeEEEEEEccCC-------------CCceEEEEEcCCchHhhhhhEEEECCCC
Confidence 999999999999999999998766555 5589987542 1247899999999999999999999999
Q ss_pred CEEEEEecC-CCCceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCc
Q psy15223 659 DYALVHIKN-DPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTG 737 (2492)
Q Consensus 659 ~Y~~~~~~~-~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG 737 (2492)
+|++++..+ ..++.+|+++++++++..+. .....+.+++|++|.|++|.||+. ++++||++++||++++|||
T Consensus 248 ~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~G~~l~g~~~~~P~~------~~~ipi~~~~~V~~~~GTG 320 (810)
T 1wkb_A 248 TYVKAKVRRKDKEETWIVSKEAAYKLSFQD-REIEVIEEFKGEKLIGKYVRNPVS------GDEVIILPAEFVDPDNATG 320 (810)
T ss_dssp CEEEEEEEETTEEEEEEEEHHHHHHHTTSS-CEEEEEEECTTTTTTTCEEECSSS------CCEEEEEECTTSCTTSTTS
T ss_pred cEEEEEecCCCcceeeeeHHHHHHHHHhhh-cceEEEEEEEchhhcCCEEECCCC------CCeeEEEecCcccCCCCce
Confidence 999998643 12368999999988764332 112334899999999999999998 8899999999999999999
Q ss_pred cEEecCCCCHHHHHH----------HHHcCCCC-----CCccccc-----------------------CC----------
Q psy15223 738 IVHSAPAYGIEDFLI----------FKKQNMKD-----SDIINPV-----------------------MD---------- 769 (2492)
Q Consensus 738 ~Vh~aPahg~~D~~~----------~~~~~l~~-----~~~~~~v-----------------------d~---------- 769 (2492)
+||+|||||++||.+ |++|||+. -+++++| |+
T Consensus 321 ~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~ 400 (810)
T 1wkb_A 321 VVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTI 400 (810)
T ss_dssp CEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHH
T ss_pred eEEeCCCCCHHHHHHHHhhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhh
Confidence 999999999999987 47889852 1244443 32
Q ss_pred ------CCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEe-ecccceeecCCCCcchh
Q psy15223 770 ------DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYR-TTLQWFINMDKIPKNEK 842 (2492)
Q Consensus 770 ------~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r-~t~QWFi~~~~~~~~~~ 842 (2492)
+|+|+ .++|.|+++++|++.|++.|++.|.+...+++.| ||+|||||+|++++ +++|||+++++
T Consensus 401 ~~~~~~~G~~~--~g~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~vi~~~~~~qwF~~~~~------ 471 (810)
T 1wkb_A 401 YKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGN------ 471 (810)
T ss_dssp HHHHHHSCEEC--SGGGTTEEHHHHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBCEEEEEEEEEEECTTC------
T ss_pred hhccccCceEe--ccCcCCeEHHHhHHHHHHHHHhCCCeeeEEecCC-CCcCCCCCCEEEEEecCCceeEecCh------
Confidence 68887 6889999999999999999999999998877766 89999999999999 79999999986
Q ss_pred HHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeE---EEECCC-CccccCcHHHHHHHHHHHh--
Q psy15223 843 KSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAF---FIHKKS-GKLHPKTLELIELIAKKIE-- 916 (2492)
Q Consensus 843 ~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~---~~~~~~-~~~~~~~~~~i~~~~~~~~-- 916 (2492)
..+++++++++++++|+|+++++++.+|+++++||||||||+||+|||+ |.++.. +... .-....++..+.
T Consensus 472 ~~~~~~~l~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~i---Yv~~~~~~~~~~~~ 548 (810)
T 1wkb_A 472 PEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTI---YMAYYTISRHINKL 548 (810)
T ss_dssp HHHHHHHHHHHHTSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTTTSSSS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcceecccCCCCce---eeehhhhHHHHHHh
Confidence 3499999999999999999999999999999999999999999999994 444421 1110 001112222221
Q ss_pred --hcCCccccccCchhhcCCC-----ccCceecCCccccccccccccchhcccCccccCCcCeeeeecccccchhhHHHH
Q psy15223 917 --LNGIEIWQNLDIKEFLGDD-----AVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSS 989 (2492)
Q Consensus 917 --~~g~~~w~~~~~~~~~~~~-----~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~s~ 989 (2492)
..|.+ ++++.++. ...+.+ .+++|+||+||+++..+...+.++++|||+|+|++|+||+++|+...
T Consensus 549 ~~~~~~~------~~~l~~~~~d~~~~~~~~~-g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G~D~~~~H~~~~ 621 (810)
T 1wkb_A 549 RQEGKLD------PEKLTPEFFDYIFLEEFSE-DKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFF 621 (810)
T ss_dssp HHTTCCC------GGGCCHHHHHHHHHSCCCH-HHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHH
T ss_pred HhhcCCC------HHHcCccceeeeecccccc-CccccchhhhCCCHHHHHhhHHHHHhhCCceEEeecccccccHHHHH
Confidence 22321 12221100 001112 25678888999877544322233467899999999999999998888
Q ss_pred HHHHHHhcCCCCc-eEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhh-ccCcccccccCHHHHHHHHHH
Q psy15223 990 LLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-STDYSKDLSISNEILNRVVET 1067 (2492)
Q Consensus 990 l~~~~~~~~~~p~-k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~-s~~~~~d~~fs~~~l~~~~~~ 1067 (2492)
++.+.++.+..|| +.+++|||+++ +|+|||||+||+|+|.+++++||+|++|||++ ++++++|++||++.++.+.+.
T Consensus 622 ~~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~ 700 (810)
T 1wkb_A 622 IFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQ 700 (810)
T ss_dssp HHHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHH
T ss_pred HHHHHHHcCccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCCCCCCcccCHHHHHHHHHH
Confidence 9999998887777 99999999996 89999999999999999999999999999997 588999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhh
Q psy15223 1068 YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDIL 1147 (2492)
Q Consensus 1068 ~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~ 1147 (2492)
++|++|+++++.++. .+. ...+...|+|++++++++++++.++|++|+|++|+..++.++++. .|+|++..
T Consensus 701 l~rl~n~~~~~~~~~---~~~-----~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~-~n~yi~~~ 771 (810)
T 1wkb_A 701 IERFYELISQFAEYE---VKG-----NVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMND-LRWYLRRT 771 (810)
T ss_dssp HHHHHHHHHHHHTCC---CCS-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHHHhcc---Ccc-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 999999999987542 111 123567899999999999999999999999999999776444454 58999998
Q ss_pred hhhhccccCChHHHHHH-HHHHHHHHHHHHHHhcccchhHHHHHHHHcc
Q psy15223 1148 KDRLYTTKKNSHARRSA-QTSIWHINQSLLRLISPILSFTSEEAWSIFS 1195 (2492)
Q Consensus 1148 Kdrl~~~~~~~~~r~sa-~~~L~~il~~l~~lLaPilP~~aEeiw~~l~ 1195 (2492)
|++ + + ++ +++++++++.+++||+|||||+|||||+.|+
T Consensus 772 k~~------~---~-~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 772 EGR------D---D-EAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp TTC------C---C-HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred cCc------c---h-hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 853 1 1 34 8899999999999999999999999999884
No 12
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=5.9e-118 Score=1212.88 Aligned_cols=670 Identities=19% Similarity=0.296 Sum_probs=512.9
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
+++++++|++||++|+++++|+... +.++++|++++|||||||.|||||++|++++|+++||+||+||+|+|++||||
T Consensus 24 ~y~~~~iE~kw~~~W~~~~~f~~~~--~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~ 101 (880)
T 4arc_A 24 QYRPEEIESKVQLHWDEKRTFEVTE--DESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDA 101 (880)
T ss_dssp SCCHHHHHHHHHHHHHHTTTTCCCC--CTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECC
T ss_pred cCChHHHHHHHHHHHHhcCCcccCC--cCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccc
Confidence 5789999999999999999998743 34788999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1649 HGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1649 hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
||+|||.+|++. +++|.+ |+.++++.|++||++||+++||+++|.|+||.|+++++|+|.+|+++||||+
T Consensus 102 ~Glpie~~a~~~---g~~p~~-------~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~ 171 (880)
T 4arc_A 102 FGLPAEGAAVKN---NTAPAP-------WTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYK 171 (880)
T ss_dssp CSTHHHHHHHHT---TSCHHH-------HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCcHHHHHHHHc---CCCHHH-------HHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999999999876 777754 8999999999999999999999999999999999999999999999999999
Q ss_pred eCcccccCCCCCccccccccc------------ceeeecceEEEEEeccCc-------------hhh----HhhhccCCC
Q psy15223 1729 GLKPVNWCFDCKSALAEAEIE------------YKKKYDFSIYVGFSFSEP-------------EKI----KSIFNLKNL 1779 (2492)
Q Consensus 1729 ~~~~v~wcp~~~t~Lad~Eve------------y~~~~~~~~yv~f~~~~~-------------~~~----~~~~~~~~~ 1779 (2492)
+.++|+|||.|+|+|||+||+ +++. +++|+++.-... +.+ .++++.+.+
T Consensus 172 ~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~--~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~g 249 (880)
T 4arc_A 172 KTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEI--PQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEG 249 (880)
T ss_dssp EEECC------------------------------CE--EEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEEEE
T ss_pred eceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEc--cceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccccc
Confidence 999999999999999997663 3332 334433221000 000 011111000
Q ss_pred -------CCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCc---CceE--EEE
Q psy15223 1780 -------PSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFK---GNII--GIC 1847 (2492)
Q Consensus 1780 -------~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~---~~~v--~~~ 1847 (2492)
.+.+.+|+|||||||||||++||||||+++|+.....+ ...++.+.+..+.. ...+ .+.
T Consensus 250 ~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (880)
T 4arc_A 250 VEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAEN---------NPELAAFIDECRNTKVAEAEMATMEK 320 (880)
T ss_dssp EEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGG---------CHHHHHHHTC----------------
T ss_pred eEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcC---------hHHHHHHHHHHhccCchhhhhcccee
Confidence 12356899999999999999999999999987654322 11233333322211 1112 356
Q ss_pred ecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC---------
Q psy15223 1848 KGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM--------- 1918 (2492)
Q Consensus 1848 ~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd--------- 1918 (2492)
+|. +.|+++.||++ ++++||+.+|||++++|||+||+|||||++||++|++|||+...++.+.|
T Consensus 321 ~g~-~~g~~~~~P~~------~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~ 393 (880)
T 4arc_A 321 KGV-DTGFKAVHPLT------GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQ 393 (880)
T ss_dssp CEE-EEEEEEECTTT------CCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSS
T ss_pred ecc-ccCcEEecCCC------CCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccc
Confidence 776 78999999999 99999999999999999999999999999999999999994444443332
Q ss_pred ---CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHH
Q psy15223 1919 ---DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSL 1995 (2492)
Q Consensus 1919 ---~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~ 1995 (2492)
++|++. +++.|.||++++|+++|++.|+++|.+.+.
T Consensus 394 ~~~~~g~~~-ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~---------------------------------------- 432 (880)
T 4arc_A 394 ALTEKGVLF-NSGEFNGLDHEAAFNAIADKLTAMGVGERK---------------------------------------- 432 (880)
T ss_dssp CCCSCCCBC-SSGGGTTCCHHHHHHHHHHHHHHTTSEEEE----------------------------------------
T ss_pred cccCCceee-cCcccCCCCHHHHHHHHHHHHHHcCCccee----------------------------------------
Confidence 245443 468899999999999999999999975332
Q ss_pred HHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHH--hhcC----
Q psy15223 1996 RESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKI--ELNG---- 2069 (2492)
Q Consensus 1996 k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~--~~~g---- 2069 (2492)
++| +++|||||||||||+|||+|||++||.+++..+++...+++.+ ...|
T Consensus 433 ----------v~y--------------rlrDW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~ 488 (880)
T 4arc_A 433 ----------VNY--------------RLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIK 488 (880)
T ss_dssp ----------EEE--------------SCCCEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHH
T ss_pred ----------EEE--------------EcccceeeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchH
Confidence 111 2579999999999999999999999976543333211011000 0011
Q ss_pred -cccccccchhhhcCCCccCceecccccccccccCcchhhhccCCcc--------ccCCcCceeeecccchh------hh
Q psy15223 2070 -IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK--------KQLIFPADLYLEGSDQH------RG 2134 (2492)
Q Consensus 2070 -~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~--------~~~~~P~Dl~~~G~D~~------r~ 2134 (2492)
...|.+..| | +..++||+|||||||||||++.++....+. .++|||+|+|++|.||. ..
T Consensus 489 ~~~~w~~~~c----p--g~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaR 562 (880)
T 4arc_A 489 ADPEWAKTTV----N--GMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFR 562 (880)
T ss_dssp HSTTTTEEES----S--SSEEEECCCEECTTTGGGTHHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHH
T ss_pred hCccceeecc----C--CCcceeCCCcCCCcccCcHHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHH
Confidence 123433322 1 457899999999999999887776654321 15689999999999983 33
Q ss_pred hHHHHHHHHHHhcCCccccEEEEeeeEE-------cCCCc------------------------------------eeee
Q psy15223 2135 WFHSSLLTSIILNKSAPYKALLTHGFVV-------DSKGK------------------------------------KMSK 2171 (2492)
Q Consensus 2135 wf~~~l~~~~~l~~~~pfk~v~~hG~vl-------d~~G~------------------------------------KMSK 2171 (2492)
||+++|....++.+++||+++++||||+ |.+|+ ||||
T Consensus 563 f~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSK 642 (880)
T 4arc_A 563 FFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSK 642 (880)
T ss_dssp HHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCT
T ss_pred HHHHHHHHhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccC
Confidence 4566666666678899999999999997 88888 9999
Q ss_pred ccCCccCcchhhhccChhHHHHHHhcc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchH
Q psy15223 2172 SKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEI 2250 (2492)
Q Consensus 2172 S~GNvi~p~~ii~~yGaD~lR~~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~ 2250 (2492)
|+||+|+|.++|++||||++|||+++. ++++|++||++.++.+.++++|+||++++....... + ......+...
T Consensus 643 SkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~~~~--~---~~~~~~l~~~ 717 (880)
T 4arc_A 643 SKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDV--A---ALNVDALTEN 717 (880)
T ss_dssp TTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCC--C---CCCSTTCCHH
T ss_pred cCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccc--c---ccccccCCHH
Confidence 999999999999999999999999975 899999999999999999999999999987654211 0 1112345788
Q ss_pred HHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHH
Q psy15223 2251 DKYAIINITNLQKEILSHYR-MYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLI 2329 (2492)
Q Consensus 2251 D~~il~~l~~~~~~v~~a~e-~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lL 2329 (2492)
|+|+++++++++++++++|+ +|+|++|++.+++|+ +++++ | . .+ ..+++.+++++++.+++||
T Consensus 718 D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efv-n~l~k-~---------~--~~---~~~~~~~l~~~l~~ll~LL 781 (880)
T 4arc_A 718 QKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELM-NKLAK-A---------P--TD---GEQDRALMQEALLAVVRML 781 (880)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHHHT-S---------C--CS---SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH-HHHHh-h---------h--cc---chHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 899999999999999 45543 1 1 11 1245678999999999999
Q ss_pred hccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCc
Q psy15223 2330 SPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPK 2367 (2492)
Q Consensus 2330 aPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~ 2367 (2492)
+|||||+|||||+.|+.. +||+.++||++++
T Consensus 782 aPf~PhiaEElW~~Lg~~-------~sv~~~~wP~~d~ 812 (880)
T 4arc_A 782 NPFTPHICFTLWQELKGE-------GDIDNAPWPVADE 812 (880)
T ss_dssp TTTSHHHHHHHHHHTTCS-------SCGGGSCCCCCCH
T ss_pred hhccHHHHHHHHHHcCCC-------CeEEeCCCCCCCH
Confidence 999999999999999864 6999999998653
No 13
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=2.5e-115 Score=1202.15 Aligned_cols=679 Identities=20% Similarity=0.292 Sum_probs=512.8
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR 525 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~ 525 (2492)
+.++++|++++|||||||.|||||++|++++|+++||+||+||+|+|++||||||+|||.+|++. +.+|.
T Consensus 29 ~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~---g~~~~------- 98 (878)
T 2v0c_A 29 PGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKF---GVHPK------- 98 (878)
T ss_dssp CC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHT---TCCHH-------
T ss_pred cCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHc---CCCHH-------
Confidence 45678899999999999999999999999999999999999999999999999999999999885 66764
Q ss_pred HHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccc-ee
Q psy15223 526 ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKK-KY 604 (2492)
Q Consensus 526 ~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~-~~ 604 (2492)
+|+.++++.|+++|++||+++||+++|+|+||.|+++++++|.+|+++|+||++.++|+|||.|+|+|||+||++.. ..
T Consensus 99 ~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~ 178 (878)
T 2v0c_A 99 DWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWR 178 (878)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESS
T ss_pred HHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998643 11
Q ss_pred -ccEEEEE-------eecCCch-hhh---------------------------hhhccCCCCCCCeEEEEEecCCccccc
Q psy15223 605 -DFSIYVG-------FSFSEPE-KIK---------------------------SIFNLKNLPSGKGYIVIWTSTPWTIPA 648 (2492)
Q Consensus 605 -~~s~yv~-------f~~~~~~-~~~---------------------------~~~~~~~~~~~~~~~~iwTTtPwTl~~ 648 (2492)
+.+.++. |++..-. .+. -.|.+ .+.+.+++|||||||||||
T Consensus 179 ~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~---~~~~~~l~v~TTrP~Tl~g 255 (878)
T 2v0c_A 179 HEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPV---EGKEVRIPVFTTRPDTLFG 255 (878)
T ss_dssp CTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEEEEEEEEB---TTSSCEEEEEESCGGGGGG
T ss_pred cCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhccccCceEEEEe---cCCCceEEEEeCCchhhhC
Confidence 3232222 2221100 000 00111 1235789999999999999
Q ss_pred ccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCCcCcE-EEEEecccccCCEEecCCcccccCCCceecEEec
Q psy15223 649 NQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNI-IGICKGIKLSKINFFHPLSNIDINYNRLSPIYLG 727 (2492)
Q Consensus 649 n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~-~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~ 727 (2492)
|+||||||+++|+.+..++ +....++++++++..+...+... ..+++|. |.|+++.||++ ++++||+.+
T Consensus 256 ~~~vav~pe~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~g~~~~~P~~------~~~ipi~~~ 325 (878)
T 2v0c_A 256 ATFLVLAPEHPLTLELAAP---EKREEVLAYVEAAKRKTEIERQAEGREKTGV-FLGAYALNPAT------GERIPIWTA 325 (878)
T ss_dssp CCEEEECTTSHHHHHHSCG---GGHHHHHHHHHHHHTSCHHHHHCSSSCCCCE-EEEEEEECTTT------CCEEEEEEC
T ss_pred cEEEEEcCCCeeeehhccc---hhHHHHHHHHHHHhhhhhhhhhhccceeeeE-ecCcEEECCCC------CCEeEEEEe
Confidence 9999999999998655432 22233344444433222111111 2467788 89999999998 899999999
Q ss_pred CCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCC---------CCccccc-----CCCCCCcchhhchHHHH
Q psy15223 728 DYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD---------DGNFIST-----LPLFGGMSIWKASKLIC 793 (2492)
Q Consensus 728 ~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~---------~G~~~~~-----~~~~~G~~v~~a~~~i~ 793 (2492)
+||+++.|||+||+|||||++||++|++||| +++++||. +|.|+++ .+.|.|+++++|++.|+
T Consensus 326 ~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L---~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~Ii 402 (878)
T 2v0c_A 326 DYVLFGYGTGAIMAVPAHDQRDYEFARKFGL---PIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVI 402 (878)
T ss_dssp TTSCTTSTTSEEEECTTTCHHHHHHHHHHTC---CCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHH
T ss_pred CcccCCCCCceEEeCCCCCHHHHHHHHHcCC---CceeeeCCCCccccccccccccCCeeEecCCCCCCcCHHHHHHHHH
Confidence 9999999999999999999999999999999 77788874 3466654 47899999999999999
Q ss_pred HHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhc
Q psy15223 794 SYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILN 873 (2492)
Q Consensus 794 ~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~ 873 (2492)
+.|++.|...+ ++.| +
T Consensus 403 ~~L~~~g~~~~----------------~v~~------------------------------------------------r 418 (878)
T 2v0c_A 403 AWLEEKGLGKG----------------RVTY------------------------------------------------R 418 (878)
T ss_dssp HHHHHHTSEEE----------------EEEE------------------------------------------------S
T ss_pred HHHHHCCCCCC----------------ceEE------------------------------------------------e
Confidence 99999998421 2221 2
Q ss_pred CCCeeeeccccCCceeeEEEECCCCccccCcHHH---HHHHHHH--HhhcCCccccccCchhh----cCCCccCceecCC
Q psy15223 874 RPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLEL---IELIAKK--IELNGIEIWQNLDIKEF----LGDDAVNYKKSND 944 (2492)
Q Consensus 874 ~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~---i~~~~~~--~~~~g~~~w~~~~~~~~----~~~~~~~~~~~~d 944 (2492)
++||||||||+||+|||+|||++||.+.....++ +.++.+. +...|.+++-. .+++ ++.++..++|++|
T Consensus 419 lrDW~ISRQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~--~~~~~~~~cp~cg~~~~retD 496 (878)
T 2v0c_A 419 LRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEA--HPEFYETTCPKCGGPAKRDTD 496 (878)
T ss_dssp CCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGG--CHHHHEEECTTTCSEEEECCC
T ss_pred cccchhhcccccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChhhh--hHhhcCCcCCCCCCcceeccc
Confidence 4699999999999999999999998764222221 0011111 12224443211 1222 2223457999999
Q ss_pred ccccccccccccchhcccC--------ccccCCcCeeeeecccccc------hhhHHHHHHHHHHhcCCCCceEEEEeeE
Q psy15223 945 TLDVWFDSGITHQTVIRGS--------HKKQLIFPADLYLEGSDQH------RGWFHSSLLTSIILNKSAPYKALLTHGF 1010 (2492)
Q Consensus 945 vlDvWfdSg~~~~~~~~~~--------~~~~~~~p~Dl~~~G~D~~------rgwf~s~l~~~~~~~~~~p~k~v~~hG~ 1010 (2492)
||||||||++++....... .+.++|||+|+|++|+||+ ++||+++|....++.+++||++|++|||
T Consensus 497 tmDtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~ 576 (878)
T 2v0c_A 497 TMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGM 576 (878)
T ss_dssp EECHHHHHTSHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCC
T ss_pred cccccccccchhhhccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhheecce
Confidence 9999999985544332111 1125789999999999994 4566665554445678999999999999
Q ss_pred EEcC----------------------------------------------CC-------ccccccCCCccCcchhhhhcC
Q psy15223 1011 VVDS----------------------------------------------KG-------KKMSKSKGNIIKPQKLCNLFG 1037 (2492)
Q Consensus 1011 vld~----------------------------------------------~G-------~KMSKS~GN~i~p~~ii~~yG 1037 (2492)
|+|+ +| +|||||+||+|+|.++|++||
T Consensus 577 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yG 656 (878)
T 2v0c_A 577 VLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQG 656 (878)
T ss_dssp EEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSC
T ss_pred EeccceeccccccccceeccccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcC
Confidence 9984 99 999999999999999999999
Q ss_pred hhhHHHHhhc-cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHH
Q psy15223 1038 AEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEIL 1116 (2492)
Q Consensus 1038 aD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~ 1116 (2492)
||++|||+++ +++++|++||++.++++.++++|+||++++.+.++. +.....+...+...|+|++++++++++++.
T Consensus 657 ADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~---~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~ 733 (878)
T 2v0c_A 657 ADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALL---ETSGVFQAEALEGKDRELYGKLHETLKKVT 733 (878)
T ss_dssp HHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHH---TCCCCCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHhccc---ccccccCcccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999997 899999999999999999999999999988765431 000111233467899999999999999999
Q ss_pred HHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1117 SHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1117 ~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
++|++|+|++|++.|++|++ ++++ |.+ . + . ++++++++++.+++||+|||||+|||||+.|+
T Consensus 734 ~~~e~~~f~~Ai~~l~~f~~-~l~k-~~~----~---~--~------~~~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg- 795 (878)
T 2v0c_A 734 EDLEALRFNTAIAALMEFLN-ALYE-YRK----D---R--P------VTPVYRTAIRYYLQMLFPFAPHLAEELWHWFW- 795 (878)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HHHH-HHH----H---C--C------SCHHHHHHHHHHHHHHTTTSHHHHHHHHHHHC-
T ss_pred HHHHcccHHHHHHHHHHHHH-HHhh-hcc----c---c--h------hHHHHHHHHHHHHHHHcccchHHHHHHHHHcC-
Confidence 99999999999999999994 6755 332 1 1 1 12689999999999999999999999999997
Q ss_pred CCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15223 1197 KNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRS 1247 (2492)
Q Consensus 1197 ~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~ 1247 (2492)
. +||+.+.||+.++... .++.++.+++++++++..++..|.
T Consensus 796 ~-------~sv~~~~wP~~d~~~l---~~~~~~~~vqvngkvR~~i~v~~~ 836 (878)
T 2v0c_A 796 P-------DSLFEAGWPELDEKAL---EKDVVEVAVQVNGAVAGTIHIPKD 836 (878)
T ss_dssp S-------SCGGGSCCCCCCGGGG---C-----------------------
T ss_pred C-------CceeecCCCCCCHHHH---HHHHHHHHHhhHHHHHHHcccCcC
Confidence 3 6999999998665322 246688999999988888777664
No 14
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=3.8e-112 Score=1155.85 Aligned_cols=632 Identities=20% Similarity=0.304 Sum_probs=487.7
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR 525 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~ 525 (2492)
+.++++|++++|||||||.|||||++|++++|+++||+||+||+|+|++||||||+|||.+|++. +++|.+
T Consensus 49 ~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~---g~~p~~------ 119 (880)
T 4arc_A 49 DESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKN---NTAPAP------ 119 (880)
T ss_dssp CTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHT---TSCHHH------
T ss_pred cCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHc---CCCHHH------
Confidence 34678999999999999999999999999999999999999999999999999999999999875 677755
Q ss_pred HHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccc-------
Q psy15223 526 ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI------- 598 (2492)
Q Consensus 526 ~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Ev------- 598 (2492)
|+.++++.|++||++||+++||+++|+|+||.|.++++++|.+|+++||||++.++|+|||.|+|+||++||
T Consensus 120 -~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~ 198 (880)
T 4arc_A 120 -WTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWR 198 (880)
T ss_dssp -HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC----------------------
T ss_pred -HHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcC
Confidence 889999999999999999999999999999999999999999999999999999999999999999999655
Q ss_pred -----cccce-------------------------------------eccEEEEEeecCCchhhhhhhccCCCCCCCeEE
Q psy15223 599 -----EYKKK-------------------------------------YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYI 636 (2492)
Q Consensus 599 -----ey~~~-------------------------------------~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~ 636 (2492)
+|++. .|.+++|+|++.+ .+.++
T Consensus 199 ~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~g~~v~f~~~~---------------~~~~i 263 (880)
T 4arc_A 199 CDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVND---------------YDNTL 263 (880)
T ss_dssp --------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEEEEEEEEEEETT---------------CSSEE
T ss_pred CCCccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccccceEEEEEecC---------------CCceE
Confidence 44432 2334555555532 34689
Q ss_pred EEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC---CcCcEE--EEEecccccCCEEecCC
Q psy15223 637 VIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG---FKGNII--GICKGIKLSKINFFHPL 711 (2492)
Q Consensus 637 ~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~---~~~~~~--~~~~G~~l~g~~~~~P~ 711 (2492)
+|||||||||+||+||||||+++|+.....+ +..++++.++.+ .....+ .+.+|. +.|+++.||+
T Consensus 264 ~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~P~ 333 (880)
T 4arc_A 264 TVYTTRPDTFMGCTYLAVAAGHPLAQKAAEN---------NPELAAFIDECRNTKVAEAEMATMEKKGV-DTGFKAVHPL 333 (880)
T ss_dssp EEEESCGGGGGGCCEEEECTTCHHHHHHGGG---------CHHHHHHHTC----------------CEE-EEEEEEECTT
T ss_pred EEEeCCchhhcCCeEEEECCCcHHHHHHhcC---------hHHHHHHHHHHhccCchhhhhccceeecc-ccCcEEecCC
Confidence 9999999999999999999999987654322 122333333222 111122 356776 7899999999
Q ss_pred cccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCC------CCcccc-----cCCCC
Q psy15223 712 SNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD------DGNFIS-----TLPLF 780 (2492)
Q Consensus 712 ~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~------~G~~~~-----~~~~~ 780 (2492)
+ ++++||+.++||+++.|||+||++||||++||++|++||||...++.|.|. +|.|++ +.+.|
T Consensus 334 ~------~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~ 407 (880)
T 4arc_A 334 T------GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEF 407 (880)
T ss_dssp T------CCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSGGG
T ss_pred C------CCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCccc
Confidence 9 899999999999999999999999999999999999999955544444321 223333 35789
Q ss_pred CCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEec
Q psy15223 781 GGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFP 860 (2492)
Q Consensus 781 ~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P 860 (2492)
.||++++|++.|++.|++.|.+.+. + +|
T Consensus 408 ~Gl~~~eA~~~ii~~L~~~g~~~~~----------------v----------------------------------~y-- 435 (880)
T 4arc_A 408 NGLDHEAAFNAIADKLTAMGVGERK----------------V----------------------------------NY-- 435 (880)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSEEEE----------------E----------------------------------EE--
T ss_pred CCCCHHHHHHHHHHHHHHcCCccee----------------E----------------------------------EE--
Confidence 9999999999999999999985442 1 11
Q ss_pred chhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHH--hhcC-----CccccccCchhhcC
Q psy15223 861 SWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKI--ELNG-----IEIWQNLDIKEFLG 933 (2492)
Q Consensus 861 ~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~--~~~g-----~~~w~~~~~~~~~~ 933 (2492)
+++|||||||||||+|||+|||++||.+.+...++...+++.+ ...| ...|....
T Consensus 436 ------------rlrDW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~------ 497 (880)
T 4arc_A 436 ------------RLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTT------ 497 (880)
T ss_dssp ------------SCCCEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEE------
T ss_pred ------------EcccceeeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhCccceeec------
Confidence 2469999999999999999999999976422221100000000 0011 11222111
Q ss_pred CCccCceecCCccccccccccccchhcccCc--------cccCCcCeeeeecccccc------hhhHHHHHHHHHHhcCC
Q psy15223 934 DDAVNYKKSNDTLDVWFDSGITHQTVIRGSH--------KKQLIFPADLYLEGSDQH------RGWFHSSLLTSIILNKS 999 (2492)
Q Consensus 934 ~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~--------~~~~~~p~Dl~~~G~D~~------rgwf~s~l~~~~~~~~~ 999 (2492)
+.+..++|++|||||||||+|++..+....+ ..++|||+|+|++|.||. ..||++.|....++.++
T Consensus 498 cpg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ 577 (880)
T 4arc_A 498 VNGMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSD 577 (880)
T ss_dssp SSSSEEEECCCEECTTTGGGTHHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCS
T ss_pred cCCCcceeCCCcCCCcccCcHHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 1256799999999999999865544432211 115799999999999984 23456666666667889
Q ss_pred CCceEEEEeeEEE-------cCCCc------------------------------------cccccCCCccCcchhhhhc
Q psy15223 1000 APYKALLTHGFVV-------DSKGK------------------------------------KMSKSKGNIIKPQKLCNLF 1036 (2492)
Q Consensus 1000 ~p~k~v~~hG~vl-------d~~G~------------------------------------KMSKS~GN~i~p~~ii~~y 1036 (2492)
.||+++++||||+ |.+|+ |||||+||+|+|.++|++|
T Consensus 578 ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekY 657 (880)
T 4arc_A 578 EPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERY 657 (880)
T ss_dssp CSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHH
T ss_pred CChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHHc
Confidence 9999999999997 88888 9999999999999999999
Q ss_pred ChhhHHHHhhcc-CcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHH
Q psy15223 1037 GAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI 1115 (2492)
Q Consensus 1037 GaD~lRl~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v 1115 (2492)
|||++|||+++. ++++|++||++.++++.++++|+||++++.+..... + ......+...|+|++++++++++++
T Consensus 658 GADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~~~~--~---~~~~~~l~~~D~~ll~~l~~~i~~V 732 (880)
T 4arc_A 658 GADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDV--A---ALNVDALTENQKALRRDVHKTIAKV 732 (880)
T ss_dssp CHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCC--C---CCCSTTCCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccc--c---ccccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999975 899999999999999999999999999987664211 0 1122346788999999999999999
Q ss_pred HHHHh-ccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHc
Q psy15223 1116 LSHYR-MYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 1194 (2492)
Q Consensus 1116 ~~a~~-~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l 1194 (2492)
+++|+ +|+|++|++.|++|+ ++++. | . .++ .+++.+++++++.+++||+|||||+|||||+.|
T Consensus 733 ~~a~ed~~~fntAi~~l~efv-n~l~k-~---------~--~~~---~~~~~~l~~~l~~ll~LLaPf~PhiaEElW~~L 796 (880)
T 4arc_A 733 TDDIGRRQTFNTAIAAIMELM-NKLAK-A---------P--TDG---EQDRALMQEALLAVVRMLNPFTPHICFTLWQEL 796 (880)
T ss_dssp HHHHHTTCCHHHHHHHHHHHH-HHHHT-S---------C--CSS---HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHT
T ss_pred HHHHHhhhchhHHHHHHHHHH-HHHHh-h---------h--ccc---hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHc
Confidence 99999 899999999999999 45654 2 1 111 246789999999999999999999999999999
Q ss_pred cCCCccccCCCceeeccCCCCc
Q psy15223 1195 SDKNFYIESGETIFTQLHYKLP 1216 (2492)
Q Consensus 1195 ~~~~~~~~~~~SV~~~~wp~~~ 1216 (2492)
+.. +||+.+.||+.+
T Consensus 797 g~~-------~sv~~~~wP~~d 811 (880)
T 4arc_A 797 KGE-------GDIDNAPWPVAD 811 (880)
T ss_dssp TCS-------SCGGGSCCCCCC
T ss_pred CCC-------CeEEeCCCCCCC
Confidence 763 699999999854
No 15
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=9.7e-81 Score=835.22 Aligned_cols=470 Identities=18% Similarity=0.233 Sum_probs=397.2
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHH
Q psy15223 447 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARA 526 (2492)
Q Consensus 447 ~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~ 526 (2492)
+..++|+|+.|||||||.||||||+|++++||++||+||+||+|+|++||||||+|||.+|+++ +++|.+
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~---g~~~~e------- 75 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQK---QVSPYD------- 75 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHT---TSCHHH-------
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHc---CCCHHH-------
Confidence 3457899999999999999999999999999999999999999999999999999999999986 788876
Q ss_pred HHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceecc
Q psy15223 527 LAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 606 (2492)
Q Consensus 527 ~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~ 606 (2492)
+++++++.++++|++|||++|| +++||||.|.+.++++|.+|+++|+||++.++|+|||+|+|+|||+||+..
T Consensus 76 ~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~----- 148 (542)
T 3u1f_A 76 FTTAVAGEFKKCFEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDG----- 148 (542)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEE-----
T ss_pred HHHHHHHHHHHHHHHhCCccCc--CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhcc-----
Confidence 7888999999999999998887 688999999999999999999999999999999999999999999887500
Q ss_pred EEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHH
Q psy15223 607 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKK 686 (2492)
Q Consensus 607 s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~ 686 (2492)
T Consensus 149 -------------------------------------------------------------------------------- 148 (542)
T 3u1f_A 149 -------------------------------------------------------------------------------- 148 (542)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccc
Q psy15223 687 FGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP 766 (2492)
Q Consensus 687 ~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~ 766 (2492)
+
T Consensus 149 -------------------------------------------------------~------------------------ 149 (542)
T 3u1f_A 149 -------------------------------------------------------V------------------------ 149 (542)
T ss_dssp -------------------------------------------------------E------------------------
T ss_pred -------------------------------------------------------c------------------------
Confidence 0
Q ss_pred cCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHH
Q psy15223 767 VMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLR 846 (2492)
Q Consensus 767 vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~ 846 (2492)
|..| +.+++|||||+|++++.++|||+++++ ++
T Consensus 150 -~~~g--------------------------------------~~~~~~~~sg~~ve~~~~~~~f~~l~~--------~~ 182 (542)
T 3u1f_A 150 -DKDG--------------------------------------NPCKVSLESGHVVTWVSEENYMFRLSA--------FR 182 (542)
T ss_dssp -CTTS--------------------------------------CEEEEETTTCCBEEEEEEEEEEECGGG--------GH
T ss_pred -cccC--------------------------------------ccccccCCCCCcceeeccccceecchh--------HH
Confidence 0001 235789999999999999999999998 89
Q ss_pred HHHHHHhhc--ceEecchhhHHHHHHHhc-CCCeeeecccc----CCceeeEEEECCCCccccCcHHHHHHHHHHHhhcC
Q psy15223 847 ESAITAINK--IKFFPSWGKDRLKSMILN-RPDWTISRQRH----WGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 919 (2492)
Q Consensus 847 ~~~~~~i~~--v~~~P~~~~~rl~~~l~~-~~DWcISRqr~----WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g 919 (2492)
+++++++++ ..+.|++.++.+.+|+++ ++||||||||+ ||+|||..-
T Consensus 183 ~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~-------------------------- 236 (542)
T 3u1f_A 183 ERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNP-------------------------- 236 (542)
T ss_dssp HHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEE--------------------------
T ss_pred HHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCc--------------------------
Confidence 999998864 789999999999999985 89999999998 999999421
Q ss_pred CccccccCchhhcCCCccCceecCCccccccccccccchhcccCc-------------cccCCcCeeeeecccccchhhH
Q psy15223 920 IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-------------KKQLIFPADLYLEGSDQHRGWF 986 (2492)
Q Consensus 920 ~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~-------------~~~~~~p~Dl~~~G~D~~rgwf 986 (2492)
..+++||||+...+.+...... .....||+|+|++|+||++ |
T Consensus 237 -----------------------~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~--f 291 (542)
T 3u1f_A 237 -----------------------DHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILK--F 291 (542)
T ss_dssp -----------------------EEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHH--H
T ss_pred -----------------------CeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccc--c
Confidence 1234444444333322221100 0023579999999999986 7
Q ss_pred HHHHHHHHHhc-CCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHH
Q psy15223 987 HSSLLTSIILN-KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRV 1064 (2492)
Q Consensus 987 ~s~l~~~~~~~-~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~ 1064 (2492)
|++++++.++. |..|++.+++|||+. .+|+|||||+||+|+|.+++++||+|+||||+++ +++++|++|+++.+.+.
T Consensus 292 h~~~~~a~l~~~g~~~~~~v~~hg~l~-~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~ 370 (542)
T 3u1f_A 292 HAIYWPAFLLSAGLPLPKKIVAHGWWT-KDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIAR 370 (542)
T ss_dssp HHTHHHHHHHHHTCCCCSCEEEECCCE-ETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHH
T ss_pred ccchhHHHHHhhcccccceecccccee-cCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHH
Confidence 88888877654 666779999999954 7899999999999999999999999999999997 67899999999998776
Q ss_pred HH--HHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhh
Q psy15223 1065 VE--TYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSF 1142 (2492)
Q Consensus 1065 ~~--~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~ 1142 (2492)
.+ ..++|+|++++++....+++. ..+....+...|+|++++++++++++.++|++|+|++|++.|++|+ +++|+
T Consensus 371 ~n~~l~n~l~N~~~r~~~~~~~~~~--~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~--~~~n~ 446 (542)
T 3u1f_A 371 LNGELADTLGNLVMRCTSAKINVNG--EWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVL--RAINA 446 (542)
T ss_dssp HHHTTTTTHHHHHHHHHCTTTSTTS--BCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhhcccC--CCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 54 567899999888776544432 2334456788999999999999999999999999999999999998 57999
Q ss_pred HHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1143 YLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1143 Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
|++..|++-... .+..++++++.++.++++.+++||+|||||+|||||+.|+-
T Consensus 447 Y~~~~~pw~l~k-~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~ 499 (542)
T 3u1f_A 447 YVTDMAPWKLVK-TDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGV 499 (542)
T ss_dssp HHHHHCHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTC
T ss_pred HHHhcCchhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCC
Confidence 999999853321 35566778888999999999999999999999999999974
No 16
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=3e-79 Score=832.22 Aligned_cols=486 Identities=21% Similarity=0.308 Sum_probs=397.6
Q ss_pred CcEEEEcCCCCCCCcccchHhhh-hHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVN-KILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 528 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n-~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a 528 (2492)
++|+|++|||||||.|||||++| ++++|+++||+||+||+|+|++||||||+|||.+|++. +++|.+ |+
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~---G~~p~e-------~~ 71 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE---GRSPRE-------IV 71 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH---TCCHHH-------HH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHc---CCCHHH-------HH
Confidence 47999999999999999999999 99999999999999999999999999999999999987 778765 89
Q ss_pred HHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEE
Q psy15223 529 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 608 (2492)
Q Consensus 529 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~ 608 (2492)
+++++.|+++|++|||++|| +++|+||.|.+.++++|.+|+++|+||++.++|+|||.|+|+|+|.+|+-
T Consensus 72 ~~~~~~~~~~~~~lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~g-------- 141 (722)
T 1rqg_A 72 DEFHEQIKITFQRAKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIG-------- 141 (722)
T ss_dssp HHHHHHHHHHHHHHTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCS--------
T ss_pred HHHHHHHHHHHHHhCCCCCC--CeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhccc--------
Confidence 99999999999999996655 79999999999999999999999999999999999999999999966530
Q ss_pred EEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC
Q psy15223 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 688 (2492)
Q Consensus 609 yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 688 (2492)
|.| .
T Consensus 142 --------------------------------tcP-------------~------------------------------- 145 (722)
T 1rqg_A 142 --------------------------------TCP-------------Y------------------------------- 145 (722)
T ss_dssp --------------------------------BCS-------------S-------------------------------
T ss_pred --------------------------------ccC-------------c-------------------------------
Confidence 111 0
Q ss_pred CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC
Q psy15223 689 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768 (2492)
Q Consensus 689 ~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd 768 (2492)
+|.+| .+|- . | +
T Consensus 146 --------------------------------------------------------c~~~~-----~~Gd----~-c--~ 157 (722)
T 1rqg_A 146 --------------------------------------------------------CGAED-----QKGD----Q-C--E 157 (722)
T ss_dssp --------------------------------------------------------SCCSC-----CCTT----T-C--S
T ss_pred --------------------------------------------------------cCCcc-----CCcc----h-h--h
Confidence 00000 0000 0 0 0
Q ss_pred CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 769 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 848 (2492)
Q Consensus 769 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~ 848 (2492)
..|++. +..++.+|+|||||+|++++.++|||+++++ ++++
T Consensus 158 ~~G~~l-------------------------------~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~--------~~~~ 198 (722)
T 1rqg_A 158 VCGRPL-------------------------------TPEILINPRCAICGRPISFRDSAHYYIKMQD--------FAER 198 (722)
T ss_dssp SSCCCC-------------------------------CTTSSBSCBCTTTCCBCEEEEEEEEEECGGG--------THHH
T ss_pred hccccc-------------------------------ChhhccCCcccCCCcEeEEEEeccEEEEhHH--------HHHH
Confidence 011110 0113457999999999999999999999998 9999
Q ss_pred HHHHhhcceEecchhhHHHHHHH-hcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccccC
Q psy15223 849 AITAINKIKFFPSWGKDRLKSMI-LNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLD 927 (2492)
Q Consensus 849 ~~~~i~~v~~~P~~~~~rl~~~l-~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~ 927 (2492)
+++.+++..| |++.++++.+|| ++++|||||||++||+|||++++ |
T Consensus 199 l~~~~~~~~w-p~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~---g----------------------------- 245 (722)
T 1rqg_A 199 LKRWIEKQPW-KPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEE---D----------------------------- 245 (722)
T ss_dssp HHHHHHSSCC-CHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCS---S-----------------------------
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHCCCcccceeccccCccccCcccc---C-----------------------------
Confidence 9999998884 889999999999 79999999999999999997421 0
Q ss_pred chhhcCCCccCceecCCccccccccccccchhccc-------CccccCCcCe------eeeecccccchhhHHHHHHHHH
Q psy15223 928 IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-------SHKKQLIFPA------DLYLEGSDQHRGWFHSSLLTSI 994 (2492)
Q Consensus 928 ~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~-------~~~~~~~~p~------Dl~~~G~D~~rgwf~s~l~~~~ 994 (2492)
-+.+++|||||+.+.+.+.++. ...+..|||+ ++|+.|+|+++ ||...|++.
T Consensus 246 -------------~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~--fH~~~wpA~ 310 (722)
T 1rqg_A 246 -------------MKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIP--FHAIFWPAF 310 (722)
T ss_dssp -------------STTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHH--HHHTHHHHH
T ss_pred -------------CCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccc--cchhhhHHH
Confidence 0235789999988876654421 1112345652 38999999998 678778776
Q ss_pred Hhc-C-----------CCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc-CcccccccCHHHH
Q psy15223 995 ILN-K-----------SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEIL 1061 (2492)
Q Consensus 995 ~~~-~-----------~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~~~d~~fs~~~l 1061 (2492)
+.. + ..| ++|++|||+++ +|+|||||+||+|+|.+++++||+|++|||+++. ++++|++|+++.+
T Consensus 311 l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~-~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~ 388 (722)
T 1rqg_A 311 LMAYGKYKDEEVEAEWNLP-YDIPANEYLTL-EGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDF 388 (722)
T ss_dssp HHTTCCBCSSSCCBCBCCC-SBCCEECCEEE-TTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHH
T ss_pred HhccCCCcccccccCCCCC-CEEEEeeeEEe-CCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHH
Confidence 554 2 345 99999999997 9999999999999999999999999999999985 8999999999998
Q ss_pred HHHHH--HHHHHHHHH----HHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy15223 1062 NRVVE--TYRRIRNTL----RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 1135 (2492)
Q Consensus 1062 ~~~~~--~~~kl~n~~----rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~ 1135 (2492)
.+..+ .+++++|++ +|+..+.++..+ ....+...|+|++++++++.+++.++|++|+|++|++.+++|+
T Consensus 389 ~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~-----~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~ 463 (722)
T 1rqg_A 389 KVRINEELVNNLGNFVHRALTFVNRYFDGVVP-----ERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA 463 (722)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77544 456666654 444444332111 1233567899999999999999999999999999999999998
Q ss_pred hhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1136 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1136 ~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
+++|+|++..|+|++.. .+..+.++++.+++++++.++++|+|||||+||+||+.|+.
T Consensus 464 --~~~n~Yi~~~kpw~~~k-~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~ 521 (722)
T 1rqg_A 464 --SFGNRYFDHKQPWKTAK-EDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNL 521 (722)
T ss_dssp --HHHHHHHHTTCHHHHTT-TCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred --HHHHHHHHhcCchhhcC-CCHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCC
Confidence 58999999999998874 24444567788889999999999999999999999999975
No 17
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=3.3e-79 Score=820.40 Aligned_cols=470 Identities=19% Similarity=0.234 Sum_probs=395.4
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHH
Q psy15223 1597 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARA 1676 (2492)
Q Consensus 1597 ~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~ 1676 (2492)
+..++|+|+.|||||||.||||||++++++||++||+||+||+|+|++||||||+|||.+|+++ +++|.+
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~---g~~~~e------- 75 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQK---QVSPYD------- 75 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHT---TSCHHH-------
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHc---CCCHHH-------
Confidence 4567899999999999999999999999999999999999999999999999999999999987 888876
Q ss_pred HHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecc
Q psy15223 1677 LAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 1756 (2492)
Q Consensus 1677 ~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~ 1756 (2492)
+++++++.++++|++||+++|| +++|+||.|.+.++++|.+|+++|+||++.++|+|||+|+|+|+|+||+..
T Consensus 76 ~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~----- 148 (542)
T 3u1f_A 76 FTTAVAGEFKKCFEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDG----- 148 (542)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEE-----
T ss_pred HHHHHHHHHHHHHHHhCCccCc--CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhcc-----
Confidence 7888999999999999999887 678999999999999999999999999999999999999999999887510
Q ss_pred eEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHH
Q psy15223 1757 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKK 1836 (2492)
Q Consensus 1757 ~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~ 1836 (2492)
T Consensus 149 -------------------------------------------------------------------------------- 148 (542)
T 3u1f_A 149 -------------------------------------------------------------------------------- 148 (542)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccc
Q psy15223 1837 FGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP 1916 (2492)
Q Consensus 1837 ~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~ 1916 (2492)
+
T Consensus 149 -------------------------------------------------------~------------------------ 149 (542)
T 3u1f_A 149 -------------------------------------------------------V------------------------ 149 (542)
T ss_dssp -------------------------------------------------------E------------------------
T ss_pred -------------------------------------------------------c------------------------
Confidence 0
Q ss_pred cCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHH
Q psy15223 1917 VMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLR 1996 (2492)
Q Consensus 1917 vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k 1996 (2492)
|..| +.+++|||||+|++++.++|||+++++ ++
T Consensus 150 -~~~g--------------------------------------~~~~~~~~sg~~ve~~~~~~~f~~l~~--------~~ 182 (542)
T 3u1f_A 150 -DKDG--------------------------------------NPCKVSLESGHVVTWVSEENYMFRLSA--------FR 182 (542)
T ss_dssp -CTTS--------------------------------------CEEEEETTTCCBEEEEEEEEEEECGGG--------GH
T ss_pred -cccC--------------------------------------ccccccCCCCCcceeeccccceecchh--------HH
Confidence 0000 124689999999999999999999999 88
Q ss_pred HHHHHhhh--cceEecccchhHHHHhhh-CCCCcccccccC----CCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcC
Q psy15223 1997 ESAITAIN--KIKFFPSWGKDRLKSMIL-NRPDWTISRQRH----WGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 2069 (2492)
Q Consensus 1997 ~~~~~~~~--~v~~~P~~~~~~~~~~l~-~~~DW~ISRqr~----WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g 2069 (2492)
++++++++ ...+.|++.++.+.+|++ +++||||||||+ ||+|||.+..
T Consensus 183 ~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~------------------------- 237 (542)
T 3u1f_A 183 ERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPD------------------------- 237 (542)
T ss_dssp HHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEE-------------------------
T ss_pred HHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcC-------------------------
Confidence 99999886 478999999999999998 489999999998 9999994211
Q ss_pred cccccccchhhhcCCCccCceecccccccccccCcchhhhccCCc-------------cccCCcCceeeecccchhhhhH
Q psy15223 2070 IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-------------KKQLIFPADLYLEGSDQHRGWF 2136 (2492)
Q Consensus 2070 ~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~-------------~~~~~~P~Dl~~~G~D~~r~wf 2136 (2492)
.+++||||+...+.+...... .+...||+|+|++|+||++ |
T Consensus 238 ------------------------~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~--f 291 (542)
T 3u1f_A 238 ------------------------HXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILK--F 291 (542)
T ss_dssp ------------------------EEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHH--H
T ss_pred ------------------------eeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccc--c
Confidence 234444444333332221000 0012379999999999987 7
Q ss_pred HHHHHHHHHhc-CCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHH
Q psy15223 2137 HSSLLTSIILN-KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRV 2214 (2492)
Q Consensus 2137 ~~~l~~~~~l~-~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~ 2214 (2492)
|+.++++.++. +..|++.+++|||+. .+|+|||||+||+|+|.+++++||+|+|||||++ +++++|++|+++.+.+.
T Consensus 292 h~~~~~a~l~~~g~~~~~~v~~hg~l~-~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~ 370 (542)
T 3u1f_A 292 HAIYWPAFLLSAGLPLPKKIVAHGWWT-KDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIAR 370 (542)
T ss_dssp HHTHHHHHHHHHTCCCCSCEEEECCCE-ETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHH
T ss_pred ccchhHHHHHhhcccccceecccccee-cCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHH
Confidence 78888877654 666779999999954 7899999999999999999999999999999997 68999999999998776
Q ss_pred HH--HHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhh
Q psy15223 2215 VE--TYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSF 2292 (2492)
Q Consensus 2215 ~~--~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~ 2292 (2492)
.+ ..++|+|++++++....++.. ..+....+...|+|++++++++++.++++|++|+|++|++.|++|+ +++|+
T Consensus 371 ~n~~l~n~l~N~~~r~~~~~~~~~~--~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~--~~~n~ 446 (542)
T 3u1f_A 371 LNGELADTLGNLVMRCTSAKINVNG--EWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVL--RAINA 446 (542)
T ss_dssp HHHTTTTTHHHHHHHHHCTTTSTTS--BCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhhcccC--CCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 54 567899999888765444332 2233456788999999999999999999999999999999999998 57999
Q ss_pred HHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2293 YLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2293 Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
|++..|++... ..+..++++++.++.++++.+++||+|||||+|||||+.|+-
T Consensus 447 Y~~~~~pw~l~-k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~ 499 (542)
T 3u1f_A 447 YVTDMAPWKLV-KTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGV 499 (542)
T ss_dssp HHHHHCHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTC
T ss_pred HHHhcCchhhh-cCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCC
Confidence 99999985332 134556677888899999999999999999999999999974
No 18
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=1.6e-78 Score=825.22 Aligned_cols=487 Identities=21% Similarity=0.312 Sum_probs=396.7
Q ss_pred CcEEEEcCCCCCCCcccchHhhh-hHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHH
Q psy15223 1600 PKFILHDGPPYANGDIHIGHAVN-KILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 1678 (2492)
Q Consensus 1600 ~~f~i~~~pPy~nG~lHlGH~~~-~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~ 1678 (2492)
++|+|++|||||||.|||||++| ++++|+++||+||+||+|+|++||||||+|||.+|++. +++|.+ |+
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~---G~~p~e-------~~ 71 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE---GRSPRE-------IV 71 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH---TCCHHH-------HH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHc---CCCHHH-------HH
Confidence 47999999999999999999999 99999999999999999999999999999999999988 788765 89
Q ss_pred HHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceE
Q psy15223 1679 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 1758 (2492)
Q Consensus 1679 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~ 1758 (2492)
.++++.++++|++||+++|| +++|+||.|++.++++|.+|+++|+||++.++|+|||.|+|+|+|.+|+-
T Consensus 72 ~~~~~~~~~~~~~lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~g-------- 141 (722)
T 1rqg_A 72 DEFHEQIKITFQRAKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIG-------- 141 (722)
T ss_dssp HHHHHHHHHHHHHHTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCS--------
T ss_pred HHHHHHHHHHHHHhCCCCCC--CeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhccc--------
Confidence 99999999999999997665 78999999999999999999999999999999999999999999976530
Q ss_pred EEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1759 yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
|.| .
T Consensus 142 --------------------------------tcP-------------~------------------------------- 145 (722)
T 1rqg_A 142 --------------------------------TCP-------------Y------------------------------- 145 (722)
T ss_dssp --------------------------------BCS-------------S-------------------------------
T ss_pred --------------------------------ccC-------------c-------------------------------
Confidence 111 0
Q ss_pred CcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC
Q psy15223 1839 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 1918 (2492)
Q Consensus 1839 ~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd 1918 (2492)
++.+|
T Consensus 146 --------------------------------------------------------c~~~~------------------- 150 (722)
T 1rqg_A 146 --------------------------------------------------------CGAED------------------- 150 (722)
T ss_dssp --------------------------------------------------------SCCSC-------------------
T ss_pred --------------------------------------------------------cCCcc-------------------
Confidence 00000
Q ss_pred CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1919 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1919 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
..|..++.++. .+ +..++.+|+|||||+|++++.++|||+++++ ++++
T Consensus 151 ~~Gd~c~~~G~----------------------~l--~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~--------~~~~ 198 (722)
T 1rqg_A 151 QKGDQCEVCGR----------------------PL--TPEILINPRCAICGRPISFRDSAHYYIKMQD--------FAER 198 (722)
T ss_dssp CCTTTCSSSCC----------------------CC--CTTSSBSCBCTTTCCBCEEEEEEEEEECGGG--------THHH
T ss_pred CCcchhhhccc----------------------cc--ChhhccCCcccCCCcEeEEEEeccEEEEhHH--------HHHH
Confidence 00111111110 00 0112457999999999999999999999999 9999
Q ss_pred HHHhhhcceEecccchhHHHHhh-hCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccc
Q psy15223 1999 AITAINKIKFFPSWGKDRLKSMI-LNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLD 2077 (2492)
Q Consensus 1999 ~~~~~~~v~~~P~~~~~~~~~~l-~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~ 2077 (2492)
+++++++.. +|++.++++.+|| ++++|||||||++||+|||++++ +
T Consensus 199 l~~~~~~~~-wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~---g----------------------------- 245 (722)
T 1rqg_A 199 LKRWIEKQP-WKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEE---D----------------------------- 245 (722)
T ss_dssp HHHHHHSSC-CCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCS---S-----------------------------
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHCCCcccceeccccCccccCcccc---C-----------------------------
Confidence 999999888 5889999999999 79999999999999999997320 0
Q ss_pred hhhhcCCCccCceecccccccccccCcchhhhcc-------CCccccCCcCc------eeeecccchhhhhHHHHHHHHH
Q psy15223 2078 IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIR-------GSHKKQLIFPA------DLYLEGSDQHRGWFHSSLLTSI 2144 (2492)
Q Consensus 2078 ~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~-------~~~~~~~~~P~------Dl~~~G~D~~r~wf~~~l~~~~ 2144 (2492)
-+.+++|||||+.+.+.+.+. ....++.|||. ++|++|+|+++ ||..+|+++
T Consensus 246 -------------~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~--fH~~~wpA~ 310 (722)
T 1rqg_A 246 -------------MKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIP--FHAIFWPAF 310 (722)
T ss_dssp -------------STTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHH--HHHTHHHHH
T ss_pred -------------CCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccc--cchhhhHHH
Confidence 023588999998887765442 11112334542 38999999998 677777776
Q ss_pred Hhc-C-----------CccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhcc-CCCCcccccHHHH
Q psy15223 2145 ILN-K-----------SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEIL 2211 (2492)
Q Consensus 2145 ~l~-~-----------~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~-~~~~d~~fs~~~l 2211 (2492)
++. + ..| +++++|||+++ +|+|||||+||+|+|.+++++||+|++||||++. ++++|++|+++.+
T Consensus 311 l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~-~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~ 388 (722)
T 1rqg_A 311 LMAYGKYKDEEVEAEWNLP-YDIPANEYLTL-EGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDF 388 (722)
T ss_dssp HHTTCCBCSSSCCBCBCCC-SBCCEECCEEE-TTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHH
T ss_pred HhccCCCcccccccCCCCC-CEEEEeeeEEe-CCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHH
Confidence 654 2 345 99999999997 9999999999999999999999999999999975 8999999999998
Q ss_pred HHHHH--HHHHHHHHH----HHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy15223 2212 NRVVE--TYRRIRNTL----RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 2285 (2492)
Q Consensus 2212 ~~~~~--~~~kl~n~~----r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~ 2285 (2492)
.+..+ .+++++|++ +|+..+..+..+. ...+...|+|++++++++.+.+.++|++|+|++|++.+++|+
T Consensus 389 ~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~-----~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~ 463 (722)
T 1rqg_A 389 KVRINEELVNNLGNFVHRALTFVNRYFDGVVPE-----RGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA 463 (722)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-----cccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77544 456666654 4444443321111 123567899999999999999999999999999999999998
Q ss_pred HhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccC
Q psy15223 2286 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347 (2492)
Q Consensus 2286 ~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~ 2347 (2492)
+++|+|++..|+|.+.. .+..+..+++.+++++++.+++||+|||||+|||||+.|+..
T Consensus 464 --~~~n~Yi~~~kpw~~~k-~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~ 522 (722)
T 1rqg_A 464 --SFGNRYFDHKQPWKTAK-EDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLD 522 (722)
T ss_dssp --HHHHHHHHTTCHHHHTT-TCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCC
T ss_pred --HHHHHHHHhcCchhhcC-CCHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCCC
Confidence 68999999999998764 244445567788899999999999999999999999999753
No 19
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=9.9e-74 Score=762.66 Aligned_cols=465 Identities=20% Similarity=0.322 Sum_probs=392.2
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR 525 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~ 525 (2492)
..|++.|++++|||||||.||||||++++++|+++||+||+||+|+|++||||||+|||.+|++. +.++.+
T Consensus 8 ~~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~------ 78 (524)
T 2x1l_A 8 HGGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKE---GIPAAE------ 78 (524)
T ss_dssp ---CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH---TSCHHH------
T ss_pred cCCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHc---CCCHHH------
Confidence 35778999999999999999999999999999999999999999999999999999999999987 677765
Q ss_pred HHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceec
Q psy15223 526 ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYD 605 (2492)
Q Consensus 526 ~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~ 605 (2492)
+++++++.+++++++|||+. |++++|+|+.|...++++|.+|+++|+||++.++|+|||.|+|++++.|+++.
T Consensus 79 -~~~~~~~~~~~~~~~lgi~~--d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g---- 151 (524)
T 2x1l_A 79 -LARRNSDVFQRLQEKLNISF--DRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQ---- 151 (524)
T ss_dssp -HHHHHHHHHHHHHHHTTCCC--SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEC----
T ss_pred -HHHHHHHHHHHHHHHcCCcC--CCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccC----
Confidence 77889999999999999954 68899999999999999999999999999999999999999999998776410
Q ss_pred cEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHH
Q psy15223 606 FSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLK 685 (2492)
Q Consensus 606 ~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~ 685 (2492)
+
T Consensus 152 -------------------------------------------------------------~------------------ 152 (524)
T 2x1l_A 152 -------------------------------------------------------------P------------------ 152 (524)
T ss_dssp -------------------------------------------------------------T------------------
T ss_pred -------------------------------------------------------------C------------------
Confidence 0
Q ss_pred HcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCccc
Q psy15223 686 KFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIIN 765 (2492)
Q Consensus 686 ~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~ 765 (2492)
+
T Consensus 153 ---------------------------------~---------------------------------------------- 153 (524)
T 2x1l_A 153 ---------------------------------D---------------------------------------------- 153 (524)
T ss_dssp ---------------------------------T----------------------------------------------
T ss_pred ---------------------------------C----------------------------------------------
Confidence 0
Q ss_pred ccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeecccccccc-ccCCcEEEeecccceeecCCCCcchhHH
Q psy15223 766 PVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCW-RHKTPIIYRTTLQWFINMDKIPKNEKKS 844 (2492)
Q Consensus 766 ~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~w-R~~~pvi~r~t~QWFi~~~~~~~~~~~~ 844 (2492)
| +.|+ |||+|++++.++|||+++++
T Consensus 154 -----G-----------------------------------------~~c~~~~g~~v~~~~~~qwF~~l~~-------- 179 (524)
T 2x1l_A 154 -----G-----------------------------------------TRIATETGAPVTWTEEQTYFFRLSA-------- 179 (524)
T ss_dssp -----S-----------------------------------------CEEETTTCCBEEEEEEEEEEECGGG--------
T ss_pred -----C-----------------------------------------CccccccCCcceEEecCCeEeeHHH--------
Confidence 0 0477 99999999999999999998
Q ss_pred HHHHHHHHhhc--ceEecchhhHHHHHHH-hcCCCeeeecccc-CCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCC
Q psy15223 845 LRESAITAINK--IKFFPSWGKDRLKSMI-LNRPDWTISRQRH-WGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGI 920 (2492)
Q Consensus 845 ~~~~~~~~i~~--v~~~P~~~~~rl~~~l-~~~~DWcISRqr~-WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~ 920 (2492)
+++++++.+++ ..+.|+..++++.+|+ ++++||||||||. ||+|||. +
T Consensus 180 ~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~--~-------------------------- 231 (524)
T 2x1l_A 180 YTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPD--H-------------------------- 231 (524)
T ss_dssp SHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETT--E--------------------------
T ss_pred HHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCC--C--------------------------
Confidence 99999999974 3478999999999999 4899999999995 9999991 0
Q ss_pred ccccccCchhhcCCCccCceecCCccccccccccccchhcccCcc----ccCCcCeeeeecccccchhhHHHHHHHHHHh
Q psy15223 921 EIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK----KQLIFPADLYLEGSDQHRGWFHSSLLTSIIL 996 (2492)
Q Consensus 921 ~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~----~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~ 996 (2492)
+.+|+||||||++++++.++.+.+ +..+||+|+|++|+||++ ||++++++.+.
T Consensus 232 ---------------------~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~D~~~--fh~~~~~a~l~ 288 (524)
T 2x1l_A 232 ---------------------PDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIR--FHTVYWPAFLM 288 (524)
T ss_dssp ---------------------EEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHH--HHHTHHHHHHH
T ss_pred ---------------------CCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCeEEEEeechhH--hHHHHHHHHHH
Confidence 135899999999998877765432 245789999999999995 88888766543
Q ss_pred -cCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHH--HHHHH
Q psy15223 997 -NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVET--YRRIR 1072 (2492)
Q Consensus 997 -~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~--~~kl~ 1072 (2492)
.|..||+++++||||++ +|+|||||+||+|+|.|++++||+|++|||+++ +++++|++||++.+.+..+. .++++
T Consensus 289 ~~g~~~~~~v~~hG~v~~-~G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~ 367 (524)
T 2x1l_A 289 SAGLPLPKRIFAHGWLLN-RGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELG 367 (524)
T ss_dssp HHTCCCCSCEEEECCEEE-CSCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCH
T ss_pred HCCCCCCcEEEECcEEEe-CCcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 47788899999999996 899999999999999999999999999999998 88999999999999876542 23355
Q ss_pred HHHHHHhhc----CCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhh
Q psy15223 1073 NTLRFLLAN----TSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILK 1148 (2492)
Q Consensus 1073 n~~rf~l~~----l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~K 1148 (2492)
|+++++... ..+..+ ....+.+.|+|++++++++.+.+.++|++|+|++|++.|++|++ ++|+|++..|
T Consensus 368 n~~~r~~~~~~~~~~~~~~-----~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~--~~n~y~~~~k 440 (524)
T 2x1l_A 368 NLAQRSLSMVAKNLGAAVP-----DPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLG--AANRYFSAQE 440 (524)
T ss_dssp HHHHHHHHHHHHHSTTBCC-----CCCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCC-----CccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHHHhcC
Confidence 555443321 221111 12245678999999999999999999999999999999999994 6899999999
Q ss_pred h-hhcccc--CChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCC
Q psy15223 1149 D-RLYTTK--KNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 1197 (2492)
Q Consensus 1149 d-rl~~~~--~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~ 1197 (2492)
+ +++.+. .+....++++.++.++++.++++|+|||||+|||||+.|+..
T Consensus 441 ~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 492 (524)
T 2x1l_A 441 PWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQP 492 (524)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCC
T ss_pred ChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 9 454431 122334467778889999999999999999999999999753
No 20
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=7.9e-73 Score=753.97 Aligned_cols=464 Identities=20% Similarity=0.325 Sum_probs=390.3
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHH
Q psy15223 1597 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARA 1676 (2492)
Q Consensus 1597 ~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~ 1676 (2492)
.+++.|++++|||||||.|||||+++++++|+++||+||+||+|+|++|||+||+|||.+|++. +.++.+
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~------- 78 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKE---GIPAAE------- 78 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH---TSCHHH-------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHc---CCCHHH-------
Confidence 4678999999999999999999999999999999999999999999999999999999999987 777765
Q ss_pred HHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecc
Q psy15223 1677 LAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 1756 (2492)
Q Consensus 1677 ~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~ 1756 (2492)
++.++++.+++++++||+++ |++++|+|+.|.+.++++|.+|+++|+||++.++|+|||.|+|++++.|+++
T Consensus 79 ~~~~~~~~~~~~~~~lgi~~--d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~------ 150 (524)
T 2x1l_A 79 LARRNSDVFQRLQEKLNISF--DRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTE------ 150 (524)
T ss_dssp HHHHHHHHHHHHHHHTTCCC--SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEE------
T ss_pred HHHHHHHHHHHHHHHcCCcC--CCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhcc------
Confidence 67888999999999999965 5788999999999999999999999999999999999999999998877641
Q ss_pred eEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHH
Q psy15223 1757 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKK 1836 (2492)
Q Consensus 1757 ~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~ 1836 (2492)
T Consensus 151 -------------------------------------------------------------------------------- 150 (524)
T 2x1l_A 151 -------------------------------------------------------------------------------- 150 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccc
Q psy15223 1837 FGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP 1916 (2492)
Q Consensus 1837 ~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~ 1916 (2492)
+ +
T Consensus 151 --------------------------------g----------------~------------------------------ 152 (524)
T 2x1l_A 151 --------------------------------Q----------------P------------------------------ 152 (524)
T ss_dssp --------------------------------C----------------T------------------------------
T ss_pred --------------------------------C----------------C------------------------------
Confidence 0 0
Q ss_pred cCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccccccc-ccCCcEEEeecccceeecCCCCcchhHHH
Q psy15223 1917 VMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCW-RHKTPIIYRTTLQWFINMDKIPKNEKKSL 1995 (2492)
Q Consensus 1917 vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~-R~~~pvi~~~~~QWFi~~~~~~~~~~~~~ 1995 (2492)
+| +.|+ |||+|++++.++|||+++++ +
T Consensus 153 ---~G-----------------------------------------~~c~~~~g~~v~~~~~~qwF~~l~~--------~ 180 (524)
T 2x1l_A 153 ---DG-----------------------------------------TRIATETGAPVTWTEEQTYFFRLSA--------Y 180 (524)
T ss_dssp ---TS-----------------------------------------CEEETTTCCBEEEEEEEEEEECGGG--------S
T ss_pred ---CC-----------------------------------------CccccccCCcceEEecCCeEeeHHH--------H
Confidence 00 1477 99999999999999999999 8
Q ss_pred HHHHHHhhhc--ceEecccchhHHHHhh-hCCCCcccccccC-CCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcc
Q psy15223 1996 RESAITAINK--IKFFPSWGKDRLKSMI-LNRPDWTISRQRH-WGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 2071 (2492)
Q Consensus 1996 k~~~~~~~~~--v~~~P~~~~~~~~~~l-~~~~DW~ISRqr~-WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 2071 (2492)
++++++.+++ ..+.|+..++++.+|+ ++++||||||||. ||+|||. +
T Consensus 181 ~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~--~--------------------------- 231 (524)
T 2x1l_A 181 TDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPD--H--------------------------- 231 (524)
T ss_dssp HHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETT--E---------------------------
T ss_pred HHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCC--C---------------------------
Confidence 9999999974 3478999999999999 5899999999985 9999992 0
Q ss_pred cccccchhhhcCCCccCceecccccccccccCcchhhhccCCcc----ccCCcCceeeecccchhhhhHHHHHHHHHHh-
Q psy15223 2072 IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK----KQLIFPADLYLEGSDQHRGWFHSSLLTSIIL- 2146 (2492)
Q Consensus 2072 ~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~----~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l- 2146 (2492)
+.+|+||||||++++++.++...+ ++.+||+|+|++|+||++ ||.+++++.+.
T Consensus 232 --------------------~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~D~~~--fh~~~~~a~l~~ 289 (524)
T 2x1l_A 232 --------------------PDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIR--FHTVYWPAFLMS 289 (524)
T ss_dssp --------------------EEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHH--HHHTHHHHHHHH
T ss_pred --------------------CCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCeEEEEeechhH--hHHHHHHHHHHH
Confidence 125899999999998877654321 234689999999999995 77777766543
Q ss_pred cCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHHH--HHHHHH
Q psy15223 2147 NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVET--YRRIRN 2223 (2492)
Q Consensus 2147 ~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~--~~kl~n 2223 (2492)
.+..||+++++||||++ +|+|||||+||+|+|.|++++||+|++|||+++ +++++|++|+++.+.+..+. .++|+|
T Consensus 290 ~g~~~~~~v~~hG~v~~-~G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n 368 (524)
T 2x1l_A 290 AGLPLPKRIFAHGWLLN-RGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGN 368 (524)
T ss_dssp HTCCCCSCEEEECCEEE-CSCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHH
T ss_pred CCCCCCcEEEECcEEEe-CCcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 47788899999999996 899999999999999999999999999999997 78999999999999776542 334555
Q ss_pred HHHHHHhc----CCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhh
Q psy15223 2224 TLRFLLAN----TSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKD 2299 (2492)
Q Consensus 2224 ~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~ 2299 (2492)
+++++... ..+..+ ....+...|+|++++++++.+.+.++|++|+|+.|++.+++|++ ++|+|++..|+
T Consensus 369 ~~~r~~~~~~~~~~~~~~-----~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~--~~n~y~~~~k~ 441 (524)
T 2x1l_A 369 LAQRSLSMVAKNLGAAVP-----DPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLG--AANRYFSAQEP 441 (524)
T ss_dssp HHHHHHHHHHHHSTTBCC-----CCCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCCCCC-----CccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHHHhcCC
Confidence 54443221 221111 11235678999999999999999999999999999999999994 68999999998
Q ss_pred h-hcccc--CChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccC
Q psy15223 2300 R-LYTTK--KNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347 (2492)
Q Consensus 2300 ~-l~~~~--~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~ 2347 (2492)
+ ++... .+....++++.++.++++.+++||+|||||+|||||+.|+..
T Consensus 442 w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 492 (524)
T 2x1l_A 442 WVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQP 492 (524)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCC
T ss_pred hhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 3 44321 122234456778889999999999999999999999999753
No 21
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=4.8e-72 Score=746.26 Aligned_cols=469 Identities=17% Similarity=0.230 Sum_probs=405.1
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHH
Q psy15223 447 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARA 526 (2492)
Q Consensus 447 ~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~ 526 (2492)
.++++|+++.|+|||||.|||||++++++.|+++||+||+||+|.|++|+|+||+||+.+|++. +.+|++
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~---g~~p~~------- 92 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQ---GVSPMD------- 92 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHT---TCCHHH-------
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHc---CCCHHH-------
Confidence 4567899999999999999999999999999999999999999999999999999999999885 788877
Q ss_pred HHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceecc
Q psy15223 527 LAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 606 (2492)
Q Consensus 527 ~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~ 606 (2492)
+++++.+.+++++++|||++| ++++|+|+.|...++++|.+|+++|+||++..+++||+.|+++|++.|+....
T Consensus 93 ~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~---- 166 (564)
T 3kfl_A 93 FTTSVSSEFKQCFQEMNYDMN--YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGV---- 166 (564)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEE----
T ss_pred HHHHHHHHHHHHHHHcCCCCC--ccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCc----
Confidence 888899999999999999776 57899999999999999999999999999999999999999999998875100
Q ss_pred EEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHH
Q psy15223 607 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKK 686 (2492)
Q Consensus 607 s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~ 686 (2492)
+
T Consensus 167 --------------------------------------------------~----------------------------- 167 (564)
T 3kfl_A 167 --------------------------------------------------D----------------------------- 167 (564)
T ss_dssp --------------------------------------------------C-----------------------------
T ss_pred --------------------------------------------------C-----------------------------
Confidence 0
Q ss_pred cCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccc
Q psy15223 687 FGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP 766 (2492)
Q Consensus 687 ~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~ 766 (2492)
T Consensus 168 -------------------------------------------------------------------------------- 167 (564)
T 3kfl_A 168 -------------------------------------------------------------------------------- 167 (564)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHH
Q psy15223 767 VMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLR 846 (2492)
Q Consensus 767 vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~ 846 (2492)
.+|... + .+.+||+|++++.++|||+++++ ++
T Consensus 168 --~~g~~c-------------------------~-------------~~~~~g~~~~~~~~~~~f~~l~~--------~~ 199 (564)
T 3kfl_A 168 --RDGKPC-------------------------K-------------VSLESGHVVTWVEEENYMFRLSA--------FR 199 (564)
T ss_dssp --TTSCEE-------------------------E-------------EETTTSCBCEEEEEEEEEECGGG--------GH
T ss_pred --CCCCEe-------------------------c-------------cccCCCCccEEEecceeEEEHHH--------HH
Confidence 000000 0 01268999999999999999998 99
Q ss_pred HHHHHHhhc--ceEecchhhHHHHHHHh-cCCCeeeec----cccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcC
Q psy15223 847 ESAITAINK--IKFFPSWGKDRLKSMIL-NRPDWTISR----QRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 919 (2492)
Q Consensus 847 ~~~~~~i~~--v~~~P~~~~~rl~~~l~-~~~DWcISR----qr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g 919 (2492)
+++++++++ ..|.|++.++++.+||+ +++|||||| |++||+|||.
T Consensus 200 ~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~---------------------------- 251 (564)
T 3kfl_A 200 ERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPG---------------------------- 251 (564)
T ss_dssp HHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETT----------------------------
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCC----------------------------
Confidence 999999975 45789999999999998 899999999 8899999992
Q ss_pred CccccccCchhhcCCCccCceecCCccccccccccccchhccc-Cc---c------c--cCCcCeeeeecccccchhhHH
Q psy15223 920 IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-SH---K------K--QLIFPADLYLEGSDQHRGWFH 987 (2492)
Q Consensus 920 ~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~-~~---~------~--~~~~p~Dl~~~G~D~~rgwf~ 987 (2492)
.+.+|+||||||+++|++.+++ .. + + +.+||+|+|++|+||+| ||
T Consensus 252 ---------------------~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~--FH 308 (564)
T 3kfl_A 252 ---------------------DERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILK--FH 308 (564)
T ss_dssp ---------------------EEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHH--HH
T ss_pred ---------------------CCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccc--hH
Confidence 1346999999999999988765 21 1 3 67899999999999999 88
Q ss_pred HHHHHHHH-hcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHH
Q psy15223 988 SSLLTSII-LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVV 1065 (2492)
Q Consensus 988 s~l~~~~~-~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~ 1065 (2492)
+++|++++ ..|..|+++|++|||+ +.+|+|||||+||+|+|.+++++||+|++|||+++ .++++|++|+++.+.+..
T Consensus 309 ~~~wpa~L~a~g~~~~~~v~~hg~v-~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~ 387 (564)
T 3kfl_A 309 AIYWPAFLMSAELPLPERLVSHGWW-TKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARL 387 (564)
T ss_dssp HTHHHHHHHHTTCCCCSCEEEECCE-EETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEcccE-eeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHH
Confidence 98887654 4577889999999998 79999999999999999999999999999999998 789999999999997754
Q ss_pred --HHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhH
Q psy15223 1066 --ETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY 1143 (2492)
Q Consensus 1066 --~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Y 1143 (2492)
+.+++++|+++++++.+..++. ..+....+...|+|++++++++++++.++|++|+|++|++.+++|+ .++|+|
T Consensus 388 n~~l~~~l~N~~~R~~~~~~~~~g--~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~--~~~n~Y 463 (564)
T 3kfl_A 388 NGELADTLGNLVSRCVAPKINVNG--MWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVL--RSLNAY 463 (564)
T ss_dssp HHTTTTTHHHHHHHHHCTTTSTTS--BCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--HHHHHH
Confidence 3678899999887765542221 1111234678999999999999999999999999999999999999 479999
Q ss_pred HHhhhh-hhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1144 LDILKD-RLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1144 l~~~Kd-rl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
++..|+ +|+. .+..++++++.++.++++.++++|+|||||+|||||+.|+-
T Consensus 464 ~~~~kpW~l~~--~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 515 (564)
T 3kfl_A 464 VTENAPWKLVK--MDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGV 515 (564)
T ss_dssp HHHHCHHHHTT--TCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTC
T ss_pred HHhcCChhhhc--CCHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCC
Confidence 999998 5654 24455678899999999999999999999999999999974
No 22
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=6.2e-72 Score=744.82 Aligned_cols=460 Identities=20% Similarity=0.316 Sum_probs=387.1
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHH
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARAL 527 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~ 527 (2492)
++++|+++.|+|||||.|||||++++++.|+++||+||+||+|.|++|||+||+||+.+|++. +.+|.+ +
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~---g~~~~~-------~ 92 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKE---GITPRD-------L 92 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH---TSCHHH-------H
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHc---CCCHHH-------H
Confidence 457899999999999999999999999999999999999999999999999999999999887 788877 7
Q ss_pred HHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccE
Q psy15223 528 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS 607 (2492)
Q Consensus 528 a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s 607 (2492)
++++.+.+++++++|||+. |+.++|+++.|...++++|.+|+++|+||++..+++||++|+++++++|++..
T Consensus 93 ~~~~~~~~~~~l~~lgi~~--d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~------ 164 (536)
T 4dlp_A 93 ADRNTSAFRRMAEVLNSSN--DDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVR------ 164 (536)
T ss_dssp HHHHHHHHHHHHHHTTCCC--SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEEC------
T ss_pred HHHHHHHHHHHHHHcCCCC--CcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcC------
Confidence 8889999999999999965 57889999999999999999999999999999999999999999998776410
Q ss_pred EEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHc
Q psy15223 608 IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF 687 (2492)
Q Consensus 608 ~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~ 687 (2492)
T Consensus 165 -------------------------------------------------------------------------------- 164 (536)
T 4dlp_A 165 -------------------------------------------------------------------------------- 164 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCccccc
Q psy15223 688 GFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 767 (2492)
Q Consensus 688 ~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~v 767 (2492)
T Consensus 165 -------------------------------------------------------------------------------- 164 (536)
T 4dlp_A 165 -------------------------------------------------------------------------------- 164 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHH
Q psy15223 768 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 847 (2492)
Q Consensus 768 d~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~ 847 (2492)
++|. +|+|||+|++++.++|||+++++ +++
T Consensus 165 -~~g~-----------------------------------------~c~~~g~~~e~~~~~~~f~~l~~--------~~~ 194 (536)
T 4dlp_A 165 -ADGV-----------------------------------------RYGPQGTPVEWVEEESYFFRLSA--------YQD 194 (536)
T ss_dssp -TTSC-----------------------------------------EECTTSSBCEEEEEEEEEECGGG--------GHH
T ss_pred -CCCC-----------------------------------------cccCCCCcceEEeccceEEecHH--------HHH
Confidence 0010 48899999999999999999998 899
Q ss_pred HHHHHhhcc--eEecchhhHHHHHHHh-cCCCeeeeccc-cCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccc
Q psy15223 848 SAITAINKI--KFFPSWGKDRLKSMIL-NRPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW 923 (2492)
Q Consensus 848 ~~~~~i~~v--~~~P~~~~~rl~~~l~-~~~DWcISRqr-~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w 923 (2492)
++++.+++. .+.|++.++++.+|++ +++|||||||| +||+|||.
T Consensus 195 ~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~-------------------------------- 242 (536)
T 4dlp_A 195 KLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPG-------------------------------- 242 (536)
T ss_dssp HHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTT--------------------------------
T ss_pred HHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCC--------------------------------
Confidence 999999864 4679999999999998 79999999997 69999992
Q ss_pred cccCchhhcCCCccCceecCCccccccccccccchhcccCc---cccCCcCeeeeecccccchhhHHHHHHHHHH-hcCC
Q psy15223 924 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSII-LNKS 999 (2492)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~-~~~~ 999 (2492)
.+++|+||||||+++|++.+++.. +++.+||+|++++|+||++ ||.+++++.+ ..|.
T Consensus 243 -----------------~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~--fh~~~~~a~l~a~g~ 303 (536)
T 4dlp_A 243 -----------------DEKHVMYVWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISR--FHAVYWPAFLMSAQL 303 (536)
T ss_dssp -----------------CTTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHH--HHHTHHHHHHHHTTC
T ss_pred -----------------CCCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHH--HHHHHHHHHHHHCCC
Confidence 024699999999999998887542 2367899999999999999 7777776554 3467
Q ss_pred CCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHH--HHHHHHHHHHH
Q psy15223 1000 APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVV--ETYRRIRNTLR 1076 (2492)
Q Consensus 1000 ~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~--~~~~kl~n~~r 1076 (2492)
.||++|++||||++ +|+|||||+||+|+|.+++++||+|++|||+++ .++.+|++|+++.+.+.. +.+++++|+++
T Consensus 304 ~~~~~v~~hg~v~~-~G~KMSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~ 382 (536)
T 4dlp_A 304 PLPKRVFAHGFLFN-RGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQ 382 (536)
T ss_dssp CCCSCEEEECCEEC-------------CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHH
T ss_pred CCCcEEEeeeeEee-CCceecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999985 999999999999999999999999999999998 789999999999887654 34566777654
Q ss_pred H----HhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhh-h
Q psy15223 1077 F----LLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDR-L 1151 (2492)
Q Consensus 1077 f----~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdr-l 1151 (2492)
+ +..+..++.|. ...+.+.|+|++++++++.+.+.++|++|+|++|++.+++|+ +++|+|++..|++ +
T Consensus 383 R~~~~~~~~~~~~~p~-----~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~Y~~~~k~w~l 455 (536)
T 4dlp_A 383 RSLSMIAKNCEGKVPQ-----PGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVV--AEANRYFAGQEPWAL 455 (536)
T ss_dssp HHHHHHHHHSTTBCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHH
T ss_pred HHHHHHHhhcCCCCCC-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhCCchhh
Confidence 4 44454444332 234678999999999999999999999999999999999998 6899999999984 3
Q ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1152 YTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1152 ~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
.. .+..++.+++.++.++++.++++|+|||||+|||||+.|+-
T Consensus 456 ~~--~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~ 498 (536)
T 4dlp_A 456 RK--TDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAV 498 (536)
T ss_dssp HH--HCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTC
T ss_pred cC--CCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCC
Confidence 32 24455677899999999999999999999999999999974
No 23
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=2.3e-71 Score=739.74 Aligned_cols=469 Identities=17% Similarity=0.226 Sum_probs=403.3
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHH
Q psy15223 1597 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARA 1676 (2492)
Q Consensus 1597 ~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~ 1676 (2492)
.++++|+|+.|+|||||.|||||++++++.|+++||+||+||+|+|++|+|+||+||+.+|++. +.+|.+
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~---g~~p~~------- 92 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQ---GVSPMD------- 92 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHT---TCCHHH-------
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHc---CCCHHH-------
Confidence 3567899999999999999999999999999999999999999999999999999999999886 788876
Q ss_pred HHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecc
Q psy15223 1677 LAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 1756 (2492)
Q Consensus 1677 ~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~ 1756 (2492)
+++++.+.+++++++||+++| .+++|+++.|.+.++++|.+|+++|+||++...++||+.|+++|++.|+....
T Consensus 93 ~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~---- 166 (564)
T 3kfl_A 93 FTTSVSSEFKQCFQEMNYDMN--YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGV---- 166 (564)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEE----
T ss_pred HHHHHHHHHHHHHHHcCCCCC--ccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCc----
Confidence 788899999999999999876 57899999999999999999999999999999999999999999998775100
Q ss_pred eEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHH
Q psy15223 1757 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKK 1836 (2492)
Q Consensus 1757 ~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~ 1836 (2492)
++
T Consensus 167 -------------------------------------------------~~----------------------------- 168 (564)
T 3kfl_A 167 -------------------------------------------------DR----------------------------- 168 (564)
T ss_dssp -------------------------------------------------CT-----------------------------
T ss_pred -------------------------------------------------CC-----------------------------
Confidence 00
Q ss_pred cCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccc
Q psy15223 1837 FGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP 1916 (2492)
Q Consensus 1837 ~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~ 1916 (2492)
T Consensus 169 -------------------------------------------------------------------------------- 168 (564)
T 3kfl_A 169 -------------------------------------------------------------------------------- 168 (564)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHH
Q psy15223 1917 VMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLR 1996 (2492)
Q Consensus 1917 vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k 1996 (2492)
+|..+ + .+.+||+|++++.++|||+++++ ++
T Consensus 169 ---~g~~c---~-----------------------------------~~~~~g~~~~~~~~~~~f~~l~~--------~~ 199 (564)
T 3kfl_A 169 ---DGKPC---K-----------------------------------VSLESGHVVTWVEEENYMFRLSA--------FR 199 (564)
T ss_dssp ---TSCEE---E-----------------------------------EETTTSCBCEEEEEEEEEECGGG--------GH
T ss_pred ---CCCEe---c-----------------------------------cccCCCCccEEEecceeEEEHHH--------HH
Confidence 00000 0 01268999999999999999999 89
Q ss_pred HHHHHhhhc--ceEecccchhHHHHhhh-CCCCccccc----ccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcC
Q psy15223 1997 ESAITAINK--IKFFPSWGKDRLKSMIL-NRPDWTISR----QRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 2069 (2492)
Q Consensus 1997 ~~~~~~~~~--v~~~P~~~~~~~~~~l~-~~~DW~ISR----qr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g 2069 (2492)
+.+++++++ ..|.|++.++++.+||+ +++|||||| |++||+|||.
T Consensus 200 ~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~---------------------------- 251 (564)
T 3kfl_A 200 ERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPG---------------------------- 251 (564)
T ss_dssp HHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETT----------------------------
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCC----------------------------
Confidence 999999974 45789999999999998 899999999 8899999992
Q ss_pred cccccccchhhhcCCCccCceecccccccccccCcchhhhccC-C---cc------c--cCCcCceeeecccchhhhhHH
Q psy15223 2070 IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-S---HK------K--QLIFPADLYLEGSDQHRGWFH 2137 (2492)
Q Consensus 2070 ~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~-~---~~------~--~~~~P~Dl~~~G~D~~r~wf~ 2137 (2492)
.+.+|+||||||+++|++.+.. . .+ + +.+||+|++++|+||++ ||
T Consensus 252 ---------------------~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~--FH 308 (564)
T 3kfl_A 252 ---------------------DERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILK--FH 308 (564)
T ss_dssp ---------------------EEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHH--HH
T ss_pred ---------------------CCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccc--hH
Confidence 1346999999999999988754 1 11 3 56799999999999999 88
Q ss_pred HHHHHHHHh-cCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHH
Q psy15223 2138 SSLLTSIIL-NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVV 2215 (2492)
Q Consensus 2138 ~~l~~~~~l-~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~ 2215 (2492)
..+|+++++ .+..|+++|++|||+ +.+|+|||||+||+|+|.+++++||+|++|||+++ .++++|++|+++.+.+..
T Consensus 309 ~~~wpa~L~a~g~~~~~~v~~hg~v-~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~ 387 (564)
T 3kfl_A 309 AIYWPAFLMSAELPLPERLVSHGWW-TKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARL 387 (564)
T ss_dssp HTHHHHHHHHTTCCCCSCEEEECCE-EETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEcccE-eeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHH
Confidence 888876653 577889999999998 69999999999999999999999999999999998 789999999999987754
Q ss_pred H--HHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhH
Q psy15223 2216 E--TYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY 2293 (2492)
Q Consensus 2216 ~--~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Y 2293 (2492)
+ .+++|+|+++++...+..+.. ..+....+...|+|++++++++++.+.++|++|+|++|++.+++|+ .++|+|
T Consensus 388 n~~l~~~l~N~~~R~~~~~~~~~g--~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~--~~~n~Y 463 (564)
T 3kfl_A 388 NGELADTLGNLVSRCVAPKINVNG--MWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVL--RSLNAY 463 (564)
T ss_dssp HHTTTTTHHHHHHHHHCTTTSTTS--BCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--HHHHHH
Confidence 3 678899999887665442221 1111234578999999999999999999999999999999999999 479999
Q ss_pred HHhhhh-hhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2294 LDILKD-RLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2294 le~~K~-~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
++..|+ +++. .+..+..+++.++.++++.++++|+|||||+|||||+.|+.
T Consensus 464 ~~~~kpW~l~~--~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 515 (564)
T 3kfl_A 464 VTENAPWKLVK--MDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGV 515 (564)
T ss_dssp HHHHCHHHHTT--TCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTC
T ss_pred HHhcCChhhhc--CCHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCC
Confidence 999998 5543 34455667889999999999999999999999999999975
No 24
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=2.9e-72 Score=743.76 Aligned_cols=456 Identities=22% Similarity=0.364 Sum_probs=358.3
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHH
Q psy15223 449 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 528 (2492)
Q Consensus 449 ~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a 528 (2492)
+++|+++.|||||||.||||||++++++|+++||+||+||+|+|++||||||+|||.+|++. +.+|.+ ++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~-------~~ 73 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEEL---GISPKE-------LV 73 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHS---SSCHHH-------HH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHc---CCCHHH-------HH
Confidence 57899999999999999999999999999999999999999999999999999999999885 677766 78
Q ss_pred HHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEE
Q psy15223 529 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 608 (2492)
Q Consensus 529 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~ 608 (2492)
+++++.++++|++||| +||++|+|+|+.|...++++|.+|+++|+||++.++++|||.|+|++++.|++
T Consensus 74 ~~~~~~~~~~~~~lgi--~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~--------- 142 (497)
T 2csx_A 74 DRNAERFKKLWEFLKI--EYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELA--------- 142 (497)
T ss_dssp HHHHHHHHHHHHHTTC--CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------
T ss_pred HHHHHHHHHHHHHhCC--cCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhc---------
Confidence 8999999999999999 56678999999999999999999999999999999999999999887654321
Q ss_pred EEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC
Q psy15223 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 688 (2492)
Q Consensus 609 yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 688 (2492)
T Consensus 143 -------------------------------------------------------------------------------- 142 (497)
T 2csx_A 143 -------------------------------------------------------------------------------- 142 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC
Q psy15223 689 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768 (2492)
Q Consensus 689 ~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd 768 (2492)
+
T Consensus 143 ------------------------------~------------------------------------------------- 143 (497)
T 2csx_A 143 ------------------------------E------------------------------------------------- 143 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------c-------------------------------------------------
Confidence 0
Q ss_pred CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 769 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 848 (2492)
Q Consensus 769 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~ 848 (2492)
.++|||||.|++++.++|||+++++ ++++
T Consensus 144 -------------------------------------------~~~c~~~~~~~~~~~~~~wf~~l~~--------~~~~ 172 (497)
T 2csx_A 144 -------------------------------------------DHTCPIHQKKCEYIKEPSYFFRLSK--------YQDK 172 (497)
T ss_dssp ---------------------------------------------------------CCEEEEECTTS--------SHHH
T ss_pred -------------------------------------------CCCCCCCCCCCeEEecCceEEEcHH--------HHHH
Confidence 0249999999999999999999999 8999
Q ss_pred HHHHhhcc--eEecchhhHHHHHHHh-cCCCeeeec--cc-cCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcc
Q psy15223 849 AITAINKI--KFFPSWGKDRLKSMIL-NRPDWTISR--QR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 922 (2492)
Q Consensus 849 ~~~~i~~v--~~~P~~~~~rl~~~l~-~~~DWcISR--qr-~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 922 (2492)
+++.+++. .+.|+..++++.+|++ +++|||||| || .||+|||..
T Consensus 173 l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~------------------------------ 222 (497)
T 2csx_A 173 LLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFD------------------------------ 222 (497)
T ss_dssp HHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTE------------------------------
T ss_pred HHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCC------------------------------
Confidence 99999863 4679999999999997 789999999 77 599999930
Q ss_pred ccccCchhhcCCCccCceecCCccccccccccccchhcccCccccCCcCeeeeecccccchhhHHHHHHHHHH-hcCCCC
Q psy15223 923 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSII-LNKSAP 1001 (2492)
Q Consensus 923 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~-~~~~~p 1001 (2492)
+.+++||||||++++.+++.... ..+||+|+|++|+||++ ||..++++.+ ..|..|
T Consensus 223 -------------------~~~~i~vW~ds~~~~~s~~~~~~--~~~~p~di~~~G~D~~~--~H~~~~~a~l~~~g~~~ 279 (497)
T 2csx_A 223 -------------------PEHTIYVWFDALFNYISALEDKV--EIYWPADLHLVGKDILR--FHTVYWPAFLMSLGYEL 279 (497)
T ss_dssp -------------------EEEEECSHHHHHTHHHHTTTTTH--HHHCSCSCEEEEGGGHH--HHHTHHHHHHHHHTCCC
T ss_pred -------------------CCceEEEecccchhhcccCCCcc--hhhCCceEEEeecchhH--hHHHHHHHHHHHcCCCC
Confidence 13578999999999887773211 14569999999999999 5566655442 337789
Q ss_pred ceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHH--HHHHHHHHHHH
Q psy15223 1002 YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVET--YRRIRNTLRFL 1078 (2492)
Q Consensus 1002 ~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~--~~kl~n~~rf~ 1078 (2492)
|+++++|||+++ +|+|||||+||+|+|.+++++||+|++|||+++ +++++|++|+++.+.+..+. ..+++|++.++
T Consensus 280 ~~~~~~~G~v~~-~G~KMSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~ 358 (497)
T 2csx_A 280 PKKVFAHGWWTV-EGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRV 358 (497)
T ss_dssp CSCEEEECCEES-SSSBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred CcEEEECcEEEe-CCceeCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999996 999999999999999999999999999999997 78999999999998775432 23344554433
Q ss_pred hhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCCh
Q psy15223 1079 LANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNS 1158 (2492)
Q Consensus 1079 l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~ 1158 (2492)
...+.++... .++ ...|+|++++++++.+.+.++|++|+|++|++.|++|+ .++|+|++..|++......+.
T Consensus 359 ~~~~~~~~~~--~~~----~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~~~~~~~~~~ 430 (497)
T 2csx_A 359 VNMAHKFLGG--EVS----GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFT--SYLNKYVDEKQPWALNKERKK 430 (497)
T ss_dssp HHHHHHHSTT--CBC----CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHTTSCH
T ss_pred HHHHHHhcCC--CCC----chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhcccccH
Confidence 3222111001 111 45789999999999999999999999999999999999 469999999998744322233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCC
Q psy15223 1159 HARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 1197 (2492)
Q Consensus 1159 ~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~ 1197 (2492)
.+.+++..+++++++.++++|+|||||+|||||+.|+..
T Consensus 431 ~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 469 (497)
T 2csx_A 431 EELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEK 469 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCC
Confidence 344577888999999999999999999999999999753
No 25
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=5.4e-72 Score=743.22 Aligned_cols=456 Identities=21% Similarity=0.316 Sum_probs=384.1
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHH
Q psy15223 449 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 528 (2492)
Q Consensus 449 ~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a 528 (2492)
+++|+++.|||||||.||||||++++++|+++||+||+||+|+|++|||+||+|||.+|++. +.++.+ ++
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~-------~~ 71 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA---GEDPKA-------FV 71 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHH---TSCHHH-------HH
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHc---CCCHHH-------HH
Confidence 46899999999999999999999999999999999999999999999999999999999987 778866 78
Q ss_pred HHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEE
Q psy15223 529 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 608 (2492)
Q Consensus 529 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~ 608 (2492)
+++++.++++|++||++. |.+++|+|+.|...++++|.+|+++|+||++.++++|||.|+|++++.|+.
T Consensus 72 ~~~~~~~~~~~~~lgi~~--d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~--------- 140 (500)
T 2d5b_A 72 DRVSGRFKRAWDLLGIAY--DDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV--------- 140 (500)
T ss_dssp HHHHHHHHHHHHHTTCCC--SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB---------
T ss_pred HHHHHHHHHHHHHhCCcC--CCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhcc---------
Confidence 889999999999999954 568999999999999999999999999999999999999999887653221
Q ss_pred EEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC
Q psy15223 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 688 (2492)
Q Consensus 609 yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 688 (2492)
T Consensus 141 -------------------------------------------------------------------------------- 140 (500)
T 2d5b_A 141 -------------------------------------------------------------------------------- 140 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC
Q psy15223 689 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768 (2492)
Q Consensus 689 ~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd 768 (2492)
+
T Consensus 141 ------------------------------~------------------------------------------------- 141 (500)
T 2d5b_A 141 ------------------------------E------------------------------------------------- 141 (500)
T ss_dssp ------------------------------T-------------------------------------------------
T ss_pred ------------------------------C-------------------------------------------------
Confidence 0
Q ss_pred CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 769 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 848 (2492)
Q Consensus 769 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~ 848 (2492)
++|||||+|++++.++|||+++++ ++++
T Consensus 142 --------------------------------------------g~c~~~~~~v~~~~~~~wf~~l~~--------~~~~ 169 (500)
T 2d5b_A 142 --------------------------------------------GLCPIHGRPVERRKEGNYFFRMEK--------YRPW 169 (500)
T ss_dssp --------------------------------------------TBCTTTCSBCEEEEEEEEEECGGG--------GHHH
T ss_pred --------------------------------------------CcCCCCCCeeeEEecCceEEEcHH--------HHHH
Confidence 139999999999999999999998 9999
Q ss_pred HHHHhhc-c-eEecchhhHHHHHHHh-cCCCeeeec--cc-cCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcc
Q psy15223 849 AITAINK-I-KFFPSWGKDRLKSMIL-NRPDWTISR--QR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 922 (2492)
Q Consensus 849 ~~~~i~~-v-~~~P~~~~~rl~~~l~-~~~DWcISR--qr-~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 922 (2492)
+++.+++ . .+.|+..++++.+|++ +++|||||| || .||+|||. +
T Consensus 170 l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~--~---------------------------- 219 (500)
T 2d5b_A 170 LQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPW--D---------------------------- 219 (500)
T ss_dssp HHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETT--E----------------------------
T ss_pred HHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCC--C----------------------------
Confidence 9999986 3 3579999999999996 579999999 88 69999993 0
Q ss_pred ccccCchhhcCCCccCceecCCccccccccccccchhcccCcc--ccCCcCeeeeecccccchhhHHHHHHHHHH-hcCC
Q psy15223 923 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK--KQLIFPADLYLEGSDQHRGWFHSSLLTSII-LNKS 999 (2492)
Q Consensus 923 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~--~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~-~~~~ 999 (2492)
+++|+||||||+++|++.+++..+ +..+||+|+|++|+||++ ||.+++++.+ ..|.
T Consensus 220 -------------------~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~di~~~G~D~~~--fh~~~~~a~~~~~g~ 278 (500)
T 2d5b_A 220 -------------------ENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILK--PHAVFWPTMLKAAGI 278 (500)
T ss_dssp -------------------EEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGEEEEEEGGGHH--HHHTHHHHHHHHHTC
T ss_pred -------------------CCCeeEEccccchhhHHHcCCCCCchHHHcCCCeEEEEeechhh--hHHHHHHHHHHHcCC
Confidence 235899999999999887765432 245689999999999999 6666655443 3377
Q ss_pred CCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHH--HHHHHHHHH
Q psy15223 1000 APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVET--YRRIRNTLR 1076 (2492)
Q Consensus 1000 ~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~--~~kl~n~~r 1076 (2492)
.||+++++||||++++|+|||||+||+|+|.|++++||+|++|||+++ +++++|++||++.+.+..+. .++++|+..
T Consensus 279 ~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~ 358 (500)
T 2d5b_A 279 PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQ 358 (500)
T ss_dssp CCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHH
T ss_pred CCCcEEEECceEEeCCCCcccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988999999999999999999999999999999997 78999999999999776542 233445443
Q ss_pred HHhhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhcccc
Q psy15223 1077 FLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTK 1155 (2492)
Q Consensus 1077 f~l~~l~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~ 1155 (2492)
++...+.+ ++. .++. ..++|++++++++.+.+.++|++|+|++|++.|++|+ .++|+|++..|++.....
T Consensus 359 r~~~~~~~~~~~---~~~~----~~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~w~~~~~ 429 (500)
T 2d5b_A 359 RTRAMLFRFAEG---RIPE----PVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYV--KALNRYINEKKPWELFKK 429 (500)
T ss_dssp HHHHHHHHHSTT---BCCC----CCCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhcCC---CCCc----hhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhccC
Confidence 33221111 110 1111 1147899999999999999999999999999999999 468999999999754422
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCC
Q psy15223 1156 KNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 1197 (2492)
Q Consensus 1156 ~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~ 1197 (2492)
+..+.+++..+++++++.++++|+|||||+|||||+.|+..
T Consensus 430 -~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~ 470 (500)
T 2d5b_A 430 -EPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLK 470 (500)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCC
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCCC
Confidence 22334578888999999999999999999999999999753
No 26
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=5.8e-71 Score=735.42 Aligned_cols=461 Identities=20% Similarity=0.317 Sum_probs=384.4
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHH
Q psy15223 1598 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARAL 1677 (2492)
Q Consensus 1598 ~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~ 1677 (2492)
++++|+++.|+|||||.|||||+++++++|+++||+||+||+|.|++|||+||.||+.+|++. +.+|.+ +
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~---g~~~~~-------~ 92 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKE---GITPRD-------L 92 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH---TSCHHH-------H
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHc---CCCHHH-------H
Confidence 457899999999999999999999999999999999999999999999999999999999887 788876 7
Q ss_pred HHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecce
Q psy15223 1678 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS 1757 (2492)
Q Consensus 1678 ~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~ 1757 (2492)
+.++.+.+++++++||++. +.+++|+++.|...++++|.+|+++|+||++..+++||+.|+++++++|++..
T Consensus 93 ~~~~~~~~~~~l~~lgi~~--d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~------ 164 (536)
T 4dlp_A 93 ADRNTSAFRRMAEVLNSSN--DDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVR------ 164 (536)
T ss_dssp HHHHHHHHHHHHHHTTCCC--SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEEC------
T ss_pred HHHHHHHHHHHHHHcCCCC--CcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcC------
Confidence 8889999999999999965 57889999999999999999999999999999999999999999988776410
Q ss_pred EEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHc
Q psy15223 1758 IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF 1837 (2492)
Q Consensus 1758 ~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~ 1837 (2492)
T Consensus 165 -------------------------------------------------------------------------------- 164 (536)
T 4dlp_A 165 -------------------------------------------------------------------------------- 164 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCccccc
Q psy15223 1838 GFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 1917 (2492)
Q Consensus 1838 ~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~v 1917 (2492)
T Consensus 165 -------------------------------------------------------------------------------- 164 (536)
T 4dlp_A 165 -------------------------------------------------------------------------------- 164 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHH
Q psy15223 1918 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 1997 (2492)
Q Consensus 1918 d~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~ 1997 (2492)
++| .+|+|||+|++++.++|||+++++ +++
T Consensus 165 -~~g-----------------------------------------~~c~~~g~~~e~~~~~~~f~~l~~--------~~~ 194 (536)
T 4dlp_A 165 -ADG-----------------------------------------VRYGPQGTPVEWVEEESYFFRLSA--------YQD 194 (536)
T ss_dssp -TTS-----------------------------------------CEECTTSSBCEEEEEEEEEECGGG--------GHH
T ss_pred -CCC-----------------------------------------CcccCCCCcceEEeccceEEecHH--------HHH
Confidence 001 048899999999999999999999 899
Q ss_pred HHHHhhhcc--eEecccchhHHHHhhh-CCCCccccccc-CCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccc
Q psy15223 1998 SAITAINKI--KFFPSWGKDRLKSMIL-NRPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW 2073 (2492)
Q Consensus 1998 ~~~~~~~~v--~~~P~~~~~~~~~~l~-~~~DW~ISRqr-~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w 2073 (2492)
.+++++++. .+.|++.++++.+|++ +++|||||||| +||+|||.
T Consensus 195 ~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~-------------------------------- 242 (536)
T 4dlp_A 195 KLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPG-------------------------------- 242 (536)
T ss_dssp HHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTT--------------------------------
T ss_pred HHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCC--------------------------------
Confidence 999999864 4689999999999998 89999999996 69999992
Q ss_pred cccchhhhcCCCccCceecccccccccccCcchhhhccCCc---cccCCcCceeeecccchhhhhHHHHHHHHHHh-cCC
Q psy15223 2074 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIIL-NKS 2149 (2492)
Q Consensus 2074 ~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l-~~~ 2149 (2492)
.+++|+||||||+++|++.+.... .++.+||+|++++|+||++ ||..++++.++ .+.
T Consensus 243 -----------------~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~--fh~~~~~a~l~a~g~ 303 (536)
T 4dlp_A 243 -----------------DEKHVMYVWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISR--FHAVYWPAFLMSAQL 303 (536)
T ss_dssp -----------------CTTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHH--HHHTHHHHHHHHTTC
T ss_pred -----------------CCCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHH--HHHHHHHHHHHHCCC
Confidence 024699999999999998886432 2356799999999999999 66777665543 467
Q ss_pred ccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHH--HHHHHHHHHH
Q psy15223 2150 APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE--TYRRIRNTLR 2226 (2492)
Q Consensus 2150 ~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~--~~~kl~n~~r 2226 (2492)
.||++|++||||++ +|+|||||+||+|+|.+++++||+|++|||+++ .++++|++|+++.+.+..+ .+++++|+++
T Consensus 304 ~~~~~v~~hg~v~~-~G~KMSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~ 382 (536)
T 4dlp_A 304 PLPKRVFAHGFLFN-RGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQ 382 (536)
T ss_dssp CCCSCEEEECCEEC-------------CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHH
T ss_pred CCCcEEEeeeeEee-CCceecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999985 999999999999999999999999999999998 7899999999998876543 4566777654
Q ss_pred H----HHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhc
Q psy15223 2227 F----LLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLY 2302 (2492)
Q Consensus 2227 ~----~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~ 2302 (2492)
+ +..+..++.|. ...+...|+|++++++++.+.+.++|++|+|++|++.+++|+ +++|+|++..|++..
T Consensus 383 R~~~~~~~~~~~~~p~-----~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~Y~~~~k~w~l 455 (536)
T 4dlp_A 383 RSLSMIAKNCEGKVPQ-----PGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVV--AEANRYFAGQEPWAL 455 (536)
T ss_dssp HHHHHHHHHSTTBCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHH
T ss_pred HHHHHHHhhcCCCCCC-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhCCchhh
Confidence 4 33444443332 234578999999999999999999999999999999999998 689999999988322
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2303 TTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2303 ~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
.. .+..++.+++.++.++++.+++||+|||||+|||||+.|+-
T Consensus 456 ~~-~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~ 498 (536)
T 4dlp_A 456 RK-TDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAV 498 (536)
T ss_dssp HH-HCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTC
T ss_pred cC-CCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCC
Confidence 21 23445667889999999999999999999999999999975
No 27
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=1.8e-71 Score=736.14 Aligned_cols=456 Identities=22% Similarity=0.364 Sum_probs=356.6
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHH
Q psy15223 1599 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 1678 (2492)
Q Consensus 1599 ~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~ 1678 (2492)
+++|+++.|||||||.|||||+++++++|+++||+||+||+|+|++||||||+|||.+|++. +.++.+ ++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~-------~~ 73 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEEL---GISPKE-------LV 73 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHS---SSCHHH-------HH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHc---CCCHHH-------HH
Confidence 57899999999999999999999999999999999999999999999999999999999886 777765 78
Q ss_pred HHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceE
Q psy15223 1679 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 1758 (2492)
Q Consensus 1679 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~ 1758 (2492)
.++++.++++|++||+ +||.+++|+||.|.+.++++|.+|+++|+||++.++++|||.|+|++++.|++
T Consensus 74 ~~~~~~~~~~~~~lgi--~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~--------- 142 (497)
T 2csx_A 74 DRNAERFKKLWEFLKI--EYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELA--------- 142 (497)
T ss_dssp HHHHHHHHHHHHHTTC--CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------
T ss_pred HHHHHHHHHHHHHhCC--cCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhc---------
Confidence 8999999999999999 45678999999999999999999999999999999999999999887653321
Q ss_pred EEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1759 yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
T Consensus 143 -------------------------------------------------------------------------------- 142 (497)
T 2csx_A 143 -------------------------------------------------------------------------------- 142 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC
Q psy15223 1839 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 1918 (2492)
Q Consensus 1839 ~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd 1918 (2492)
+
T Consensus 143 ------------------------------~------------------------------------------------- 143 (497)
T 2csx_A 143 ------------------------------E------------------------------------------------- 143 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------c-------------------------------------------------
Confidence 0
Q ss_pred CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1919 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1919 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
.+.|||||.|++.+.++|||+++++ ++++
T Consensus 144 -------------------------------------------~~~c~~~~~~~~~~~~~~wf~~l~~--------~~~~ 172 (497)
T 2csx_A 144 -------------------------------------------DHTCPIHQKKCEYIKEPSYFFRLSK--------YQDK 172 (497)
T ss_dssp ---------------------------------------------------------CCEEEEECTTS--------SHHH
T ss_pred -------------------------------------------CCCCCCCCCCCeEEecCceEEEcHH--------HHHH
Confidence 0248999999999999999999999 8899
Q ss_pred HHHhhhcc--eEecccchhHHHHhhh-CCCCccccc--cc-CCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccc
Q psy15223 1999 AITAINKI--KFFPSWGKDRLKSMIL-NRPDWTISR--QR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 2072 (2492)
Q Consensus 1999 ~~~~~~~v--~~~P~~~~~~~~~~l~-~~~DW~ISR--qr-~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 2072 (2492)
+++.+++. .+.|+..++++.+|++ +++|||||| || +||+|||..
T Consensus 173 l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~------------------------------ 222 (497)
T 2csx_A 173 LLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFD------------------------------ 222 (497)
T ss_dssp HHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTE------------------------------
T ss_pred HHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCC------------------------------
Confidence 99998753 4678888999999997 789999999 77 699999931
Q ss_pred ccccchhhhcCCCccCceecccccccccccCcchhhhccCCccccCCcCceeeecccchhhhhHHHHHHHHHH-hcCCcc
Q psy15223 2073 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSII-LNKSAP 2151 (2492)
Q Consensus 2073 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~-l~~~~p 2151 (2492)
+++++||||||++.+.+.+.... +.+||+|+|++|+||++ ||..++++.+ ..|..|
T Consensus 223 -------------------~~~~i~vW~ds~~~~~s~~~~~~--~~~~p~di~~~G~D~~~--~H~~~~~a~l~~~g~~~ 279 (497)
T 2csx_A 223 -------------------PEHTIYVWFDALFNYISALEDKV--EIYWPADLHLVGKDILR--FHTVYWPAFLMSLGYEL 279 (497)
T ss_dssp -------------------EEEEECSHHHHHTHHHHTTTTTH--HHHCSCSCEEEEGGGHH--HHHTHHHHHHHHHTCCC
T ss_pred -------------------CCceEEEecccchhhcccCCCcc--hhhCCceEEEeecchhH--hHHHHHHHHHHHcCCCC
Confidence 13578999999999888773211 13469999999999999 5555554443 237789
Q ss_pred ccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHHH--HHHHHHHHHHH
Q psy15223 2152 YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVET--YRRIRNTLRFL 2228 (2492)
Q Consensus 2152 fk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~--~~kl~n~~r~~ 2228 (2492)
|+++++||||++ +|+|||||+||+|+|.+++++||+|++|||+++ +++++|++|+++.+.+..+. .++++|++.++
T Consensus 280 ~~~~~~~G~v~~-~G~KMSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~ 358 (497)
T 2csx_A 280 PKKVFAHGWWTV-EGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRV 358 (497)
T ss_dssp CSCEEEECCEES-SSSBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred CcEEEECcEEEe-CCceeCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999996 999999999999999999999999999999997 78999999999998775432 23445554433
Q ss_pred HhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCCh
Q psy15223 2229 LANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNS 2308 (2492)
Q Consensus 2229 ~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~ 2308 (2492)
...+.++... ..+ ...|+|++++++++.+.+.++|++|+|+.|++.+++|+ .++|+|++..|++......+.
T Consensus 359 ~~~~~~~~~~--~~~----~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~~~~~~~~~~ 430 (497)
T 2csx_A 359 VNMAHKFLGG--EVS----GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFT--SYLNKYVDEKQPWALNKERKK 430 (497)
T ss_dssp HHHHHHHSTT--CBC----CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHTTSCH
T ss_pred HHHHHHhcCC--CCC----chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhcccccH
Confidence 3222111101 011 34689999999999999999999999999999999999 479999999998644322233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccC
Q psy15223 2309 HARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347 (2492)
Q Consensus 2309 ~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~ 2347 (2492)
...+++..+++++++.++++|+|||||+|||||+.|+..
T Consensus 431 ~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 469 (497)
T 2csx_A 431 EELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEK 469 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCC
Confidence 345567888999999999999999999999999999753
No 28
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=4.3e-71 Score=740.49 Aligned_cols=487 Identities=19% Similarity=0.264 Sum_probs=392.4
Q ss_pred ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHH
Q psy15223 445 ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKA 524 (2492)
Q Consensus 445 ~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~ 524 (2492)
.+.++++|++++|||||||.|||||+++++++|+++||+||+||+|.|++|||+||+||+.+|++. ++++.+
T Consensus 13 ~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~----- 84 (560)
T 3h99_A 13 MTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL---GITPEQ----- 84 (560)
T ss_dssp ----CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH---TSCHHH-----
T ss_pred CCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHh---CCCHHH-----
Confidence 466889999999999999999999999999999999999999999999999999999999999986 788877
Q ss_pred HHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccccccccccccee
Q psy15223 525 RALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKY 604 (2492)
Q Consensus 525 ~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~ 604 (2492)
+++++.+.++++|++||| +|+++|+|+++.|...++++|.+|+++|+||++..+++||+.|+|+|+|.+|+- .
T Consensus 85 --~~~~~~~~~~~~~~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g---~ 157 (560)
T 3h99_A 85 --MIGEMSQEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKG---T 157 (560)
T ss_dssp --HHHHHHHHHHHHHHHTTC--CCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEE---E
T ss_pred --HHHHHHHHHHHHHHHcCC--CCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCC---C
Confidence 677788999999999999 567899999999999999999999999999999999999999999999987750 0
Q ss_pred ccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHH
Q psy15223 605 DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCL 684 (2492)
Q Consensus 605 ~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~ 684 (2492)
. |.
T Consensus 158 c--------------------------------------------------p~--------------------------- 160 (560)
T 3h99_A 158 C--------------------------------------------------PK--------------------------- 160 (560)
T ss_dssp C--------------------------------------------------TT---------------------------
T ss_pred C--------------------------------------------------CC---------------------------
Confidence 0 00
Q ss_pred HHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcc
Q psy15223 685 KKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDII 764 (2492)
Q Consensus 685 ~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~ 764 (2492)
+|.
T Consensus 161 ------------------------------------------------------------c~~----------------- 163 (560)
T 3h99_A 161 ------------------------------------------------------------CKS----------------- 163 (560)
T ss_dssp ------------------------------------------------------------TCC-----------------
T ss_pred ------------------------------------------------------------CCC-----------------
Confidence 000
Q ss_pred cccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHH
Q psy15223 765 NPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKS 844 (2492)
Q Consensus 765 ~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~ 844 (2492)
.++.|...+.++.+ +. ..+...|+|+|||++++++.++|||+++++
T Consensus 164 --~~~~gd~ce~cg~~----------------------~~--~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~-------- 209 (560)
T 3h99_A 164 --PDQYGDNCEVCGAT----------------------YS--PTELIEPKSVVSGATPVMRDSEHFFFDLPS-------- 209 (560)
T ss_dssp --SSEETTBCTTTCCB----------------------CC--GGGCEEEEETTTCCCCEEEEEEEEEECGGG--------
T ss_pred --cccccchhhhcccc----------------------CC--hhhhcCCccccCCCCceEEecceEEEEHHH--------
Confidence 00001111111100 00 001123899999999999999999999998
Q ss_pred HHHHHHHHhhcceEecchhhHHHHHHHh-cCCCeeeeccc-cCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcc
Q psy15223 845 LRESAITAINKIKFFPSWGKDRLKSMIL-NRPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 922 (2492)
Q Consensus 845 ~~~~~~~~i~~v~~~P~~~~~rl~~~l~-~~~DWcISRqr-~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 922 (2492)
+++.+++.+++. ++|+..++.+.+|++ +++|||||||+ +||+|||.
T Consensus 210 ~~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~------------------------------- 257 (560)
T 3h99_A 210 FSEMLQAWTRSG-ALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPN------------------------------- 257 (560)
T ss_dssp GHHHHHHHHHTS-CSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTT-------------------------------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCC-------------------------------
Confidence 899999999885 457777999999999 89999999999 89999993
Q ss_pred ccccCchhhcCCCccCceecCCccccccccccccchhcc-c------CccccCCcCee-----eeecccccchhhHHHHH
Q psy15223 923 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIR-G------SHKKQLIFPAD-----LYLEGSDQHRGWFHSSL 990 (2492)
Q Consensus 923 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~-~------~~~~~~~~p~D-----l~~~G~D~~rgwf~s~l 990 (2492)
.+.+|+|||||+.+.+.+.+. . ...+..+||+| +++.|+||++ ||..+
T Consensus 258 ------------------~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~--fh~~~ 317 (560)
T 3h99_A 258 ------------------APGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVY--FLSLF 317 (560)
T ss_dssp ------------------CTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHH--HHHTH
T ss_pred ------------------CCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccch--hHHHH
Confidence 023589999999998877652 1 12235689999 9999999998 55666
Q ss_pred HHHHHh--cCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc-Ccc-cccccCHHHHHHH--
Q psy15223 991 LTSIIL--NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYS-KDLSISNEILNRV-- 1064 (2492)
Q Consensus 991 ~~~~~~--~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~~-~d~~fs~~~l~~~-- 1064 (2492)
+++++. ....| ++|++|||+++ +|+|||||+||+|+|.+++++||+|++|||+++. +.. +|++|+++.+...
T Consensus 318 ~~a~l~~~g~~~p-~~v~~hg~v~~-~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~ 395 (560)
T 3h99_A 318 WPAMLEGSNFRKP-SNLFVHGYVTV-NGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVN 395 (560)
T ss_dssp HHHHHHHTTBCCC-SEEEEECCEEE-TTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCCC-cEEEEEeEEEe-CCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHH
Confidence 654433 33444 99999999997 9999999999999999999999999999999974 455 7999999987653
Q ss_pred HHHHHHHHHHHHHHhhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhH
Q psy15223 1065 VETYRRIRNTLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY 1143 (2492)
Q Consensus 1065 ~~~~~kl~n~~rf~l~~l~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Y 1143 (2492)
.+..++++|++.++++.+.. ++.. ++ ....|+|++++++++++.+.++|++|+|++|++.+++|+ +++|+|
T Consensus 396 ~~l~~~l~n~~~R~~~~~~~~~~~~---~~---~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~--~~~n~Y 467 (560)
T 3h99_A 396 ADIVNKVVNLASRNAGFINKRFDGV---LA---SELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA--DLANRY 467 (560)
T ss_dssp HHCCCCCTHHHHTTHHHHHHHSTTB---CC---SSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC---CC---CccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHH
Confidence 34556677776544432211 1111 11 135799999999999999999999999999999999998 679999
Q ss_pred HHhhhhhhcccc-CChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1144 LDILKDRLYTTK-KNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1144 l~~~Kdrl~~~~-~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
++..|+|..... .+..++.+++.+++++++.+++||+|||||+|||||+.|+-
T Consensus 468 i~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~ 521 (560)
T 3h99_A 468 VDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT 521 (560)
T ss_dssp HHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred HHhcCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCC
Confidence 999998755432 34456677888999999999999999999999999999963
No 29
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=4.9e-71 Score=739.95 Aligned_cols=487 Identities=19% Similarity=0.261 Sum_probs=390.7
Q ss_pred ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHH
Q psy15223 1595 ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKA 1674 (2492)
Q Consensus 1595 ~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~ 1674 (2492)
.+.++++|++++|||||||.|||||+++++++|+++||+||+||+|+|++|||+||+||+.+|++. ++++.+
T Consensus 13 ~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~----- 84 (560)
T 3h99_A 13 MTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL---GITPEQ----- 84 (560)
T ss_dssp ----CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH---TSCHHH-----
T ss_pred CCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHh---CCCHHH-----
Confidence 456789999999999999999999999999999999999999999999999999999999999987 788876
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeee
Q psy15223 1675 RALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKY 1754 (2492)
Q Consensus 1675 ~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~ 1754 (2492)
++.++.+.++++|++||+ +|+++|.|+++.|.+.++++|.+|+++|+||++...++||+.|+|+|+|.+|+- .
T Consensus 85 --~~~~~~~~~~~~~~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g---~ 157 (560)
T 3h99_A 85 --MIGEMSQEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKG---T 157 (560)
T ss_dssp --HHHHHHHHHHHHHHHTTC--CCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEE---E
T ss_pred --HHHHHHHHHHHHHHHcCC--CCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCC---C
Confidence 677888999999999999 567899999999999999999999999999999999999999999999987740 0
Q ss_pred cceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHH
Q psy15223 1755 DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCL 1834 (2492)
Q Consensus 1755 ~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~ 1834 (2492)
.|.
T Consensus 158 --------------------------------------------------cp~--------------------------- 160 (560)
T 3h99_A 158 --------------------------------------------------CPK--------------------------- 160 (560)
T ss_dssp --------------------------------------------------CTT---------------------------
T ss_pred --------------------------------------------------CCC---------------------------
Confidence 000
Q ss_pred HHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcc
Q psy15223 1835 KKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDII 1914 (2492)
Q Consensus 1835 ~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~ 1914 (2492)
+|.
T Consensus 161 ------------------------------------------------------------c~~----------------- 163 (560)
T 3h99_A 161 ------------------------------------------------------------CKS----------------- 163 (560)
T ss_dssp ------------------------------------------------------------TCC-----------------
T ss_pred ------------------------------------------------------------CCC-----------------
Confidence 000
Q ss_pred cccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHH
Q psy15223 1915 NPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKS 1994 (2492)
Q Consensus 1915 ~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~ 1994 (2492)
.+..|..++.|+.+- ...+...|+|+|||++++++.++|||+++++
T Consensus 164 --~~~~gd~ce~cg~~~------------------------~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~-------- 209 (560)
T 3h99_A 164 --PDQYGDNCEVCGATY------------------------SPTELIEPKSVVSGATPVMRDSEHFFFDLPS-------- 209 (560)
T ss_dssp --SSEETTBCTTTCCBC------------------------CGGGCEEEEETTTCCCCEEEEEEEEEECGGG--------
T ss_pred --cccccchhhhccccC------------------------ChhhhcCCccccCCCCceEEecceEEEEHHH--------
Confidence 001111122222110 0011123899999999999999999999999
Q ss_pred HHHHHHHhhhcceEecccchhHHHHhhh-CCCCccccccc-CCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccc
Q psy15223 1995 LRESAITAINKIKFFPSWGKDRLKSMIL-NRPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 2072 (2492)
Q Consensus 1995 ~k~~~~~~~~~v~~~P~~~~~~~~~~l~-~~~DW~ISRqr-~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 2072 (2492)
+++.+++++++. ++|+..++.+.+|++ +++|||||||+ +||+|||..
T Consensus 210 ~~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~------------------------------ 258 (560)
T 3h99_A 210 FSEMLQAWTRSG-ALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNA------------------------------ 258 (560)
T ss_dssp GHHHHHHHHHTS-CSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTC------------------------------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCC------------------------------
Confidence 889999999874 467778999999999 89999999999 899999920
Q ss_pred ccccchhhhcCCCccCceecccccccccccCcchhhhccC-------CccccCCcCce-----eeecccchhhhhHHHHH
Q psy15223 2073 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-------SHKKQLIFPAD-----LYLEGSDQHRGWFHSSL 2140 (2492)
Q Consensus 2073 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~-------~~~~~~~~P~D-----l~~~G~D~~r~wf~~~l 2140 (2492)
+.+|+|||||+.+.|++.+.. ...++.+||.| +++.|+||++ ||..+
T Consensus 259 -------------------~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~--fh~~~ 317 (560)
T 3h99_A 259 -------------------PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVY--FLSLF 317 (560)
T ss_dssp -------------------TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHH--HHHTH
T ss_pred -------------------CCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccch--hHHHH
Confidence 235899999999988776521 12235568999 9999999998 45555
Q ss_pred HHHHHh--cCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhcc-CCC-CcccccHHHHHHH--
Q psy15223 2141 LTSIIL--NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYS-KDLSISNEILNRV-- 2214 (2492)
Q Consensus 2141 ~~~~~l--~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~-~~~-~d~~fs~~~l~~~-- 2214 (2492)
++++++ ....| ++|++||||++ +|+|||||+||+|+|.+++++||+|++|||+++. +.. +|++|+++.+...
T Consensus 318 ~~a~l~~~g~~~p-~~v~~hg~v~~-~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~ 395 (560)
T 3h99_A 318 WPAMLEGSNFRKP-SNLFVHGYVTV-NGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVN 395 (560)
T ss_dssp HHHHHHHTTBCCC-SEEEEECCEEE-TTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCCC-cEEEEEeEEEe-CCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHH
Confidence 544433 23445 99999999997 9999999999999999999999999999999974 556 8999999987653
Q ss_pred HHHHHHHHHHHHHHHhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhH
Q psy15223 2215 VETYRRIRNTLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY 2293 (2492)
Q Consensus 2215 ~~~~~kl~n~~r~~~~~~~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Y 2293 (2492)
.+..++++|++.++...+.. ++.. .+ ....|+|++++++++++.++++|++|+|++|++.+++|+ +++|+|
T Consensus 396 ~~l~~~l~n~~~R~~~~~~~~~~~~---~~---~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~--~~~n~Y 467 (560)
T 3h99_A 396 ADIVNKVVNLASRNAGFINKRFDGV---LA---SELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA--DLANRY 467 (560)
T ss_dssp HHCCCCCTHHHHTTHHHHHHHSTTB---CC---SSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC---CC---CccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHH
Confidence 33556677766443322111 1110 11 124689999999999999999999999999999999998 679999
Q ss_pred HHhhhhhhcccc-CChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2294 LDILKDRLYTTK-KNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2294 le~~K~~l~~~~-~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
++..|++..... .+...+.+++.+++++++.+++||+|||||+|||||+.|+-
T Consensus 468 i~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~ 521 (560)
T 3h99_A 468 VDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT 521 (560)
T ss_dssp HHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred HHhcCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCC
Confidence 999998754332 33455667788999999999999999999999999999963
No 30
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=5.8e-71 Score=733.27 Aligned_cols=457 Identities=21% Similarity=0.320 Sum_probs=381.9
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHH
Q psy15223 1599 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 1678 (2492)
Q Consensus 1599 ~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~ 1678 (2492)
+++|+++.|||||||.|||||+++++++|+++||+||+||+|++++|||+||+||+.+|++. +.++.+ ++
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~-------~~ 71 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA---GEDPKA-------FV 71 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHH---TSCHHH-------HH
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHc---CCCHHH-------HH
Confidence 46899999999999999999999999999999999999999999999999999999999987 778765 78
Q ss_pred HHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceE
Q psy15223 1679 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 1758 (2492)
Q Consensus 1679 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~ 1758 (2492)
.++++.++++|++||+++ |.+++|+|+.|.+.++++|.+|+++|+||++.++++|||.|+|++++.++.
T Consensus 72 ~~~~~~~~~~~~~lgi~~--d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~--------- 140 (500)
T 2d5b_A 72 DRVSGRFKRAWDLLGIAY--DDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV--------- 140 (500)
T ss_dssp HHHHHHHHHHHHHTTCCC--SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB---------
T ss_pred HHHHHHHHHHHHHhCCcC--CCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhcc---------
Confidence 889999999999999965 568999999999999999999999999999999999999999887553210
Q ss_pred EEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1759 yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
T Consensus 141 -------------------------------------------------------------------------------- 140 (500)
T 2d5b_A 141 -------------------------------------------------------------------------------- 140 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC
Q psy15223 1839 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 1918 (2492)
Q Consensus 1839 ~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd 1918 (2492)
+
T Consensus 141 ------------------------------~------------------------------------------------- 141 (500)
T 2d5b_A 141 ------------------------------E------------------------------------------------- 141 (500)
T ss_dssp ------------------------------T-------------------------------------------------
T ss_pred ------------------------------C-------------------------------------------------
Confidence 0
Q ss_pred CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1919 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1919 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
++|||||+|++++.++|||+++++ +++.
T Consensus 142 --------------------------------------------g~c~~~~~~v~~~~~~~wf~~l~~--------~~~~ 169 (500)
T 2d5b_A 142 --------------------------------------------GLCPIHGRPVERRKEGNYFFRMEK--------YRPW 169 (500)
T ss_dssp --------------------------------------------TBCTTTCSBCEEEEEEEEEECGGG--------GHHH
T ss_pred --------------------------------------------CcCCCCCCeeeEEecCceEEEcHH--------HHHH
Confidence 139999999999999999999999 8999
Q ss_pred HHHhhhc-c-eEecccchhHHHHhhh-CCCCccccc--cc-CCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccc
Q psy15223 1999 AITAINK-I-KFFPSWGKDRLKSMIL-NRPDWTISR--QR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 2072 (2492)
Q Consensus 1999 ~~~~~~~-v-~~~P~~~~~~~~~~l~-~~~DW~ISR--qr-~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 2072 (2492)
+++.+++ . .+.|+..++++.+|++ +++|||||| || +||+|||..
T Consensus 170 l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~------------------------------ 219 (500)
T 2d5b_A 170 LQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWD------------------------------ 219 (500)
T ss_dssp HHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTE------------------------------
T ss_pred HHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCC------------------------------
Confidence 9999986 3 4579999999999996 679999999 77 699999930
Q ss_pred ccccchhhhcCCCccCceecccccccccccCcchhhhccCCcc--ccCCcCceeeecccchhhhhHHHHHHHHHH-hcCC
Q psy15223 2073 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK--KQLIFPADLYLEGSDQHRGWFHSSLLTSII-LNKS 2149 (2492)
Q Consensus 2073 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~--~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~-l~~~ 2149 (2492)
+++|+||||||+++|++.+....+ ++.+||+|+|++|+||++ ||..++++.+ ..|.
T Consensus 220 -------------------~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~di~~~G~D~~~--fh~~~~~a~~~~~g~ 278 (500)
T 2d5b_A 220 -------------------ENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILK--PHAVFWPTMLKAAGI 278 (500)
T ss_dssp -------------------EEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGEEEEEEGGGHH--HHHTHHHHHHHHHTC
T ss_pred -------------------CCCeeEEccccchhhHHHcCCCCCchHHHcCCCeEEEEeechhh--hHHHHHHHHHHHcCC
Confidence 235899999999999887654421 234589999999999999 5666654443 2377
Q ss_pred ccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHHH--HHHHHHHHH
Q psy15223 2150 APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVET--YRRIRNTLR 2226 (2492)
Q Consensus 2150 ~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~--~~kl~n~~r 2226 (2492)
.||+++++||||++.+|+|||||+||+|+|.+++++||+|++|||+++ +++++|++|+++.+.+..+. .++++|+..
T Consensus 279 ~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~ 358 (500)
T 2d5b_A 279 PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQ 358 (500)
T ss_dssp CCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHH
T ss_pred CCCcEEEECceEEeCCCCcccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988999999999999999999999999999999997 79999999999998776542 233455543
Q ss_pred HHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccC
Q psy15223 2227 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK 2306 (2492)
Q Consensus 2227 ~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~ 2306 (2492)
.+...+.+...+ ..+.. .++|++++++++.+.+.++|++|+|+.|++.+++|+ .++|+|++..|++.....
T Consensus 359 r~~~~~~~~~~~--~~~~~----~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~w~~~~~- 429 (500)
T 2d5b_A 359 RTRAMLFRFAEG--RIPEP----VAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYV--KALNRYINEKKPWELFKK- 429 (500)
T ss_dssp HHHHHHHHHSTT--BCCCC----CCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHH-
T ss_pred HHHHHHHHhcCC--CCCch----hHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhccC-
Confidence 322211110000 01111 137889999999999999999999999999999999 478999999998754321
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccC
Q psy15223 2307 NSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347 (2492)
Q Consensus 2307 ~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~ 2347 (2492)
+..+.++++.+++++++.++++|+|||||+|||||+.|+..
T Consensus 430 ~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~ 470 (500)
T 2d5b_A 430 EPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLK 470 (500)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCCC
Confidence 22334567888999999999999999999999999999753
No 31
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=100.00 E-value=9.5e-53 Score=498.36 Aligned_cols=241 Identities=32% Similarity=0.565 Sum_probs=219.1
Q ss_pred cccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCcee
Q psy15223 202 IKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYTI 279 (2492)
Q Consensus 202 m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~i 279 (2492)
|||+|||++.++..++.+.|+++++||+ +|||+++||.|.|+||+|++|.|+|++++++ +.+.+++....+.+++++|
T Consensus 1 MrmpRff~~~~l~~~~~i~L~~~~~~Hl~~VLR~~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i~~~~~~~~e~~~~v 80 (251)
T 4e8b_A 1 MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLEGQIDDRESPLHI 80 (251)
T ss_dssp --CCEEECSSCCCTTCEEECCHHHHHHHHTTSCCCSCCEEEEECSSSEEEEEEEEEECSSCEEEEEEEEEECCCCCSSEE
T ss_pred CCCCEEEECcccCCCCEEEeCHHHHHHHHHhCcCCCCCEEEEEeCCCcEEEEEEEEeecceEEEEEeeeecCCCCCCceE
Confidence 9999999999999999999999999999 9999999999999999999999999999765 6677888888888888999
Q ss_pred eEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHH
Q psy15223 280 TLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWL 359 (2492)
Q Consensus 280 ~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l 359 (2492)
+|+||++|+++|||+|||||||||++|+|+.|+||++++++++..+|.+||++|++||||||+|+++|+|.++.+|++++
T Consensus 81 ~L~~al~K~~r~e~ilqkatELGv~~I~p~~t~rsv~~~~~~k~~~k~~Rw~~I~~eAaeQs~R~~iP~v~~~~~~~~~l 160 (251)
T 4e8b_A 81 HLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWC 160 (251)
T ss_dssp EEEEECCSSSHHHHHHHHHHHTTCCEEEEEECTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCBCCCEEHHHHH
T ss_pred EEEEEeechhHHHHHHHHHHhhCCCEEEEEEeeeEEeecchhhhhhHHHHHHHHHHHHHHhcCCCcCcEECCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheeeeccc
Q psy15223 360 ISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGV 439 (2492)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~v~~l 439 (2492)
........++++++....+..+. ...+++.++||||||||++|++.+.++||++|||||||||||||+++|++++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~IGPEGGfs~~Ei~~~~~~Gf~~vsLG~rILRtETA~i~als~l~~~ 238 (251)
T 4e8b_A 161 AEQDEGLKLNLHPRASNSINTLP--LPVERVRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAITALQVR 238 (251)
T ss_dssp HCCCSSEEEEECTTCSCBGGGSC--SCCCEEEEEECCTTCCCHHHHHHHHHTTCEEEBCCSSCCCHHHHHHHHHHHHHHH
T ss_pred hhcCcCceEeechhhhCchhhcc--ccCCcEEEEECCCCCCCHHHHHHHHHCCCEEecCCCCceeHHHHHHHHHHHHHHH
Confidence 87666666677766555443332 2346799999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q psy15223 440 WGEIK 444 (2492)
Q Consensus 440 y~~~~ 444 (2492)
++++-
T Consensus 239 ~GdlG 243 (251)
T 4e8b_A 239 FGDLG 243 (251)
T ss_dssp TSSTT
T ss_pred HccCC
Confidence 98874
No 32
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=100.00 E-value=5.1e-51 Score=484.53 Aligned_cols=242 Identities=34% Similarity=0.580 Sum_probs=206.9
Q ss_pred cccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCcee
Q psy15223 202 IKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYTI 279 (2492)
Q Consensus 202 m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~i 279 (2492)
|+|+|||++.++..+..+.|+++++||+ +|||+++||.|.|+||+|++|.|+|++++++ ..+.+.+....+++++++|
T Consensus 3 M~m~r~f~~~~~~~~~~~~L~~~~~~Hl~~VLRl~~Gd~v~l~dg~g~~~~a~I~~~~~~~~~~~i~~~~~~~~e~~~~l 82 (257)
T 1vhy_A 3 LRIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGRELADKESHLKI 82 (257)
T ss_dssp --CCEEECSSCCTTCSEEECCHHHHHHHHTTSCCCTTCEEEEECSSSEEEEEEEEEECSSCEEEEECCCEECCCCCSSCE
T ss_pred CcccEEEECcccCCCCEEEeCHHHHHHHHHHhccCCCCEEEEEcCCCCEEEEEEEEeeCCeEEEEEEEEecccCCCCceE
Confidence 7899999988776788999999999999 9999999999999999999999999998765 5677776666677778899
Q ss_pred eEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHH
Q psy15223 280 TLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWL 359 (2492)
Q Consensus 280 ~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l 359 (2492)
+|+||+||+++|||+|||||||||++|+|+.|+||++++++++..||.+||++|++||||||+|+++|+|.++.+|++++
T Consensus 83 ~L~~al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~~~~~l 162 (257)
T 1vhy_A 83 HLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWC 162 (257)
T ss_dssp EEEEEC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHHHHH
T ss_pred EEEEecCchHHHHHHHHHHHhhCcCEEEEEEeEEEEEeccchhhhhHHHHHHHHHHHHHHHcCCCcCcEEeccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheeeeccc
Q psy15223 360 ISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGV 439 (2492)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~v~~l 439 (2492)
........++++++....+..+. ....+++.++||||||||++|++.+.++||++|||||||||||||+++|+++++..
T Consensus 163 ~~~~~~~~l~~~~~~~~~l~~~~-~~~~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i~als~l~~~ 241 (257)
T 1vhy_A 163 AENDGALKLNLHPRAHYSIKTLP-TIPAGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQIC 241 (257)
T ss_dssp TCCSSCEEEEECTTCCCBGGGCC-CCCTTCEEEEECCTTCCCHHHHHHHHHTTCEEEBCCSSCCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEcCCCccchhhhh-ccCCCeEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeehHHHHHHHHHHHHHH
Confidence 74333445555655443332221 11234799999999999999999999999999999999999999999999999987
Q ss_pred ccccc
Q psy15223 440 WGEIK 444 (2492)
Q Consensus 440 y~~~~ 444 (2492)
++.+.
T Consensus 242 ~~~~~ 246 (257)
T 1vhy_A 242 FGDLG 246 (257)
T ss_dssp HSGGG
T ss_pred hchhh
Confidence 77654
No 33
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=100.00 E-value=2.6e-50 Score=481.41 Aligned_cols=242 Identities=28% Similarity=0.384 Sum_probs=196.7
Q ss_pred ccccccccccccc---CCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCC
Q psy15223 202 IKMLRFYYPIPFI---IGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELP 276 (2492)
Q Consensus 202 m~M~r~f~~~~~~---~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~ 276 (2492)
|+|+|||++.++. .+..+.|+++++||+ +|||+++||.|.|+||+|+.|.|+|++++++ ..+.+.+....+++++
T Consensus 1 M~m~r~f~~~~~~~~~~~~~i~L~~~~~~Hl~~VLRl~~Gd~i~l~dg~G~~~~a~I~~~~~~~~~~~i~~~~~~~~e~~ 80 (268)
T 1vhk_A 1 MSLQRYFIELTKQQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELP 80 (268)
T ss_dssp ---CEEECSSCHHHHHSSSSEEEESHHHHHHHTTTCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEEEECCCCCCCS
T ss_pred CCCcEEEECccccccCCCCEEEeCHHHHHHHHHhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEEEEEeccCCCCC
Confidence 8899999987765 577899999999999 9999999999999999999999999998765 5677777666677778
Q ss_pred ceeeEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchh
Q psy15223 277 YTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFN 356 (2492)
Q Consensus 277 ~~i~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~ 356 (2492)
++|+|+||+||+++|||+|||||||||++|+|+.|+||++++++++..||.+||++|++||||||+|+++|+|.++.+|+
T Consensus 81 ~~v~L~~al~K~~r~e~ilqkatELGV~~I~p~~s~Rsv~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~~~ 160 (268)
T 1vhk_A 81 IKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQ 160 (268)
T ss_dssp SEEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHH
T ss_pred ccEEEEEeeecCccHHHHHHHHHHhCcCEEEEEEeeeeeeecccchhhhHHHHHHHHHHHHHHHcCCCCCcEEecCCCHH
Confidence 89999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred HHHhhccc-ccEEEeccCCccccccc------ccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccc
Q psy15223 357 NWLISKIS-CARILLSPRGRKKLSCW------ANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETAS 429 (2492)
Q Consensus 357 ~~l~~~~~-~~~~l~~~~~~~~~~~~------~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~ 429 (2492)
+++..... ...++++++.......+ .......++.++||||||||++|++.+.++||++|||||||||+|||+
T Consensus 161 ~~l~~~~~~~~~lv~~e~~~~~~~~l~~~~~~~~~~~~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA~ 240 (268)
T 1vhk_A 161 QLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAP 240 (268)
T ss_dssp HHHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTTCCCHHHHHHHHHTTCEEECCCSSCCCTTTHH
T ss_pred HHHhhCccCCeEEEEecCcccccccccccccchhccCCCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeehHHHH
Confidence 99975433 23455555432111111 111112379999999999999999999999999999999999999999
Q ss_pred hhheeeeccccccc
Q psy15223 430 LVALAILNGVWGEI 443 (2492)
Q Consensus 430 ~~~~~~v~~ly~~~ 443 (2492)
++|+++++..++.+
T Consensus 241 i~als~l~~~~~~~ 254 (268)
T 1vhk_A 241 LYALSAISYQTELL 254 (268)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhh
Confidence 99999998877654
No 34
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=100.00 E-value=2.6e-49 Score=462.24 Aligned_cols=226 Identities=27% Similarity=0.400 Sum_probs=197.1
Q ss_pred cccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccceEEEEEeeeecccCCCceee
Q psy15223 202 IKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKKILIQIISFLFREIELPYTIT 280 (2492)
Q Consensus 202 m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 280 (2492)
|+|+|||++ +..+.|+++++||+ +|||+++||.|.|+||+| .|.|+|+++++...+.+.+....+++++++|+
T Consensus 1 M~m~r~f~~-----~~~~~L~~~~~~Hl~~VlRl~~Gd~v~l~dg~g-~~~a~i~~~~~~~~~~i~~~~~~~~~~~~~v~ 74 (228)
T 1v6z_A 1 MRPHRAFSP-----GLTGVLPLRETRHLVEVLRARVGDRFTVFDGER-EALAEVVDLGPPLRYRVLEERRPEREVGVEVV 74 (228)
T ss_dssp -CCCEEECG-----GGCSBCCHHHHHHHHTTSCCCTTCEEEEECSSC-EEEEEEEECCSSCEEEEEEEECCCCSCSSCEE
T ss_pred CCccEEEEC-----CCEEEeCHHHHHHHHHhccCCCCCEEEEEeCCc-EEEEEEEECCCeEEEEEEEEeccccCCCccEE
Confidence 889999997 46788999999999 999999999999999999 99999999876555777776666778788999
Q ss_pred EEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHHh
Q psy15223 281 LVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLI 360 (2492)
Q Consensus 281 L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l~ 360 (2492)
|+||+||+++|||+|||||||||++|+|+.|+||++++ +..+|.+||++|++||||||+|+++|+|.++.+|++++.
T Consensus 75 L~~al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~---~~~~k~~Rw~~i~~eAaeQs~r~~~P~v~~~~~~~~~l~ 151 (228)
T 1v6z_A 75 LYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKE---MGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQ 151 (228)
T ss_dssp EEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSC---CCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGGGCCC
T ss_pred EEEEecchHHHHHHHHHHHhhCCCEEEEEEEEEEEeec---cccchHHHHHHHHHHHHHHcCCCcCcEEecCCCHHHHhh
Confidence 99999999999999999999999999999999999988 446789999999999999999999999999999999986
Q ss_pred hcccccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheeeecccc
Q psy15223 361 SKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGVW 440 (2492)
Q Consensus 361 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~v~~ly 440 (2492)
. ...++++++....+..+. . ..+++.++||||||||++|++.+.++||++|||||||||+|||+++|+++++..+
T Consensus 152 --~-~~~l~~~~~~~~~l~~~~-~-~~~~~~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i~ala~~~~~~ 226 (228)
T 1v6z_A 152 --V-AQGLVAHVGATARVREVL-D-PEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGE 226 (228)
T ss_dssp --C-SSEEEECTTCCCCHHHHC-C-TTSCEEEEECCTTCCCHHHHHHHHHHTEEEECCCSSCCCHHHHHHHHHHHHTGGG
T ss_pred --C-CCEEEEeCCCccchhhhc-c-CCCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeEeHHHHHHHHHHHHHHh
Confidence 2 445666655433222221 1 1257999999999999999999999999999999999999999999999988765
Q ss_pred c
Q psy15223 441 G 441 (2492)
Q Consensus 441 ~ 441 (2492)
+
T Consensus 227 g 227 (228)
T 1v6z_A 227 G 227 (228)
T ss_dssp T
T ss_pred c
Confidence 4
No 35
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=100.00 E-value=7.5e-48 Score=450.19 Aligned_cols=224 Identities=29% Similarity=0.369 Sum_probs=194.4
Q ss_pred cccccccccccCCcEEEeCcchhhHHHHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCce-eeE
Q psy15223 204 MLRFYYPIPFIIGQYLYLPDNIVNHLNVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYT-ITL 281 (2492)
Q Consensus 204 M~r~f~~~~~~~~~~i~L~~~~~~Hl~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~-i~L 281 (2492)
|+|||++ +..+..+.|+++++||++|||+++||.|.| ||+|+.|.|+|++++++ ..+.+.+.... ++ +++ |+|
T Consensus 1 m~r~f~~--~~~~~~~~L~~~~~~Hl~VlRl~~Gd~v~l-dg~g~~~~a~i~~~~~~~~~~~i~~~~~~-~e-~~~~i~L 75 (229)
T 2egv_A 1 MHVFYSE--ERRGNLLILREGEVKHFRVRRIEKDEEFGV-IHEGKIYVCKVRREDKREISCEIVEELET-KL-PPKDITL 75 (229)
T ss_dssp CCEEECS--CEETTEEEEETHHHHHHHHTTCCTTCCEEE-EETTEEEEEEEEEECSSEEEEEEEEECCC-CC-CSSEEEE
T ss_pred CcEEEEe--cCCCCEEEeCHHHHHHHHhhcCCCCCEEEE-eCCCCEEEEEEEEecCCEEEEEEEEEecC-CC-CCceEEE
Confidence 7899998 445788999999999999999999999999 99999999999998765 55667665555 66 778 999
Q ss_pred EEec-CCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHHh
Q psy15223 282 VQAL-PENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLI 360 (2492)
Q Consensus 282 ~~al-~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l~ 360 (2492)
+||+ ||+++|||+|||||||||++|+|+.|+||++++ ++..+|.+||++|++||||||+|+++|+|.++.+|++++.
T Consensus 76 ~~al~~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~--~~~~~k~~Rw~~i~~eAaeQs~r~~iP~v~~~~~~~~~l~ 153 (229)
T 2egv_A 76 YQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKE--EAILKKTEKWKRIVIEAMKQSRRPIPMEIKKPVRLSDLIP 153 (229)
T ss_dssp EEECCSSTHHHHHHHHHHHHHTCCEEEEEECTTSCCCH--HHHHHHHHHHHHHHHHHHHHHTCCSCCEECCCEEGGGCCC
T ss_pred EEecccCHHHHHHHHHHHHHhCcCEEEEEEeEEeeecc--cchhhHHHHHHHHHHHHHHHcCCCcCcEEcccCCHHHHHh
Confidence 9999 999999999999999999999999999999998 6678899999999999999999999999999999999987
Q ss_pred hcccccEEEeccCCcccccccccCCCCC-ceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheeeecc
Q psy15223 361 SKISCARILLSPRGRKKLSCWANNQSPQ-EVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNG 438 (2492)
Q Consensus 361 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~v~~ 438 (2492)
... ...++++++....+..+ ...+ ++.++||||||||++|++.+.++||++|||||||||+|||+++|++++++
T Consensus 154 ~~~-~~~li~~~~~~~~l~~~---~~~~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i~ala~~~~ 228 (229)
T 2egv_A 154 ESE-ENIILDNFYEGVKPKDV---NLEAKTYSVVVGPEGGFSKRESQILREKGFKSVLLEPYTLRTETAVVSIVSILMN 228 (229)
T ss_dssp CSS-EEEEECTTSCCBCGGGS---CTTCSEEEEEECCTTCCCHHHHHHHHHTTCEEECCSSSCCCHHHHHHHHHHHHHH
T ss_pred hCC-CCEEEEcCCccchhhhh---ccCCCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeEhHHHHHHHHHHHhc
Confidence 432 33455565443333222 1134 79999999999999999999999999999999999999999999987753
No 36
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=100.00 E-value=1.1e-47 Score=454.34 Aligned_cols=234 Identities=27% Similarity=0.322 Sum_probs=196.0
Q ss_pred ccccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCce
Q psy15223 201 NIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYT 278 (2492)
Q Consensus 201 ~m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~ 278 (2492)
.|+|++||.+.. . ..+.|+++++||+ +|||+++||.|.|+||+|+.|.|+|++++++ +.+++++....+++++++
T Consensus 2 ~~~m~~f~~~~~--~-~~~~L~~~~~~Hl~~VLRl~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i~~~~~~~~e~~~~ 78 (257)
T 3kw2_A 2 SLSLPLFYAPDI--E-QSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQKPWRDR 78 (257)
T ss_dssp ---CCEEECTTT--T-TCSBCCHHHHHHHHTTSCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEEEEECCCSSCSC
T ss_pred CccceEEEcCCC--C-CeEEeCHHHHHHHHHhccCCCCCEEEEEECCCCEEEEEEEEeeCCEEEEEEEEecccCCCCCCc
Confidence 488999998754 2 2788999999999 9999999999999999999999999998765 567777777766788889
Q ss_pred eeEEEecCC-chhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhH
Q psy15223 279 ITLVQALPE-NRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNN 357 (2492)
Q Consensus 279 i~L~~al~K-~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~ 357 (2492)
|+|+||+|| ++||||+|||||||||++|+|+.|+||+.+ .+|.+||++|++||||||+|+++|+|.++.+|++
T Consensus 79 i~L~~al~K~~dr~d~iiqKatELGV~~I~p~~s~rs~k~------~~k~eRw~~I~~eAaeQs~R~~~P~v~~~~~~~~ 152 (257)
T 3kw2_A 79 ITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERR------RIKAERLERIAISAMKQSLKASFPVIRVNIPIQT 152 (257)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCS------CCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHH
T ss_pred eEEEEecCCCcchHHHHHHHHHhhCCCEEEEEEeecchhh------hhhHHHHHHHHHHHHHHcCCCcCCEecCcCCHHH
Confidence 999999999 599999999999999999999999999743 4689999999999999999999999999999999
Q ss_pred HHhh-cccccEEEecc-CC-------cccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeecccc
Q psy15223 358 WLIS-KISCARILLSP-RG-------RKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETA 428 (2492)
Q Consensus 358 ~l~~-~~~~~~~l~~~-~~-------~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta 428 (2492)
++.. ......++++. +. ...+.... ....+++.++||||||||++|++.+.++||.+|||||||||||||
T Consensus 153 ~l~~~~~~~~~li~~~~e~~~~~~~~~~~l~~~~-~~~~~~v~l~IGPEGGfs~~Ei~~~~~~Gf~~vsLG~rILRtETA 231 (257)
T 3kw2_A 153 VIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDF-YHVGQDVLILIGPEGDFSPSEVESALLAGFAPVSLGESRLRTETA 231 (257)
T ss_dssp HHHHSCTTSEEEEECCCTTCC-----CCCCGGGT-CCTTSCEEEEECCTTCCCHHHHHHHHHHTCEEECCCSSCCCHHHH
T ss_pred HHhhccccCCEEEEEcccccccccccccchhHhh-ccCCCcEEEEECCCCCCCHHHHHHHHHCCCEEEcCCCCcchHHHH
Confidence 9975 23333455552 22 12221111 112468999999999999999999999999999999999999999
Q ss_pred chhheeeecccccccc
Q psy15223 429 SLVALAILNGVWGEIK 444 (2492)
Q Consensus 429 ~~~~~~~v~~ly~~~~ 444 (2492)
+++|+++++..++..+
T Consensus 232 ~i~als~~~~~~~~~~ 247 (257)
T 3kw2_A 232 GLVACQWIHTLQACYR 247 (257)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999988766543
No 37
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=100.00 E-value=3.4e-45 Score=425.82 Aligned_cols=220 Identities=26% Similarity=0.306 Sum_probs=181.6
Q ss_pred cccccccccccCCcEEEeCcchhhHHHHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCceeeEE
Q psy15223 204 MLRFYYPIPFIIGQYLYLPDNIVNHLNVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYTITLV 282 (2492)
Q Consensus 204 M~r~f~~~~~~~~~~i~L~~~~~~Hl~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~i~L~ 282 (2492)
|+..+- ++..+..+.|+++++||++|||+++||.|.|+||+|+.|.|+|++++++ ..+++.+....+++++++|+|+
T Consensus 13 ~~~~~~--~~~~~~~~~L~~~~~~Hl~VLRl~~Gd~v~l~dg~G~~~~a~I~~~~~~~~~~~i~~~~~~~~e~~~~i~L~ 90 (234)
T 1z85_A 13 MPHLFY--GTAQNGEVIFDEREAHHMRVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIVKVEEKEKEPTEKLSVV 90 (234)
T ss_dssp -CCCEE--CEEETTEEEECHHHHHHHHHTTCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEEEEECCCCCSSCEEEE
T ss_pred CCCCCC--ccCCCCEEEeCHHHHHHHHhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEEEEEeccCCCCCceEEEE
Confidence 555544 4567788999999999999999999999999999999999999998765 5677777766667778899999
Q ss_pred EecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHHhhc
Q psy15223 283 QALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISK 362 (2492)
Q Consensus 283 ~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l~~~ 362 (2492)
||+||+++|||+|||||||||++|+|+.|+ |+++ .+|.+||++|++||||||+|+++|+|. +.+|++++...
T Consensus 91 ~al~K~~r~e~ilqkatELGV~~I~p~~s~-s~~~------~~k~eRw~~i~~eAaeQs~R~~~P~v~-~~~~~~~l~~~ 162 (234)
T 1z85_A 91 VPIGRWERTRFLIEKCVELGVDEIFFHKFE-RSQH------EISLDKAKIVVREAAKQCKRYLFPKVS-FLEKLEFSGNV 162 (234)
T ss_dssp EECCCHHHHHHHHHHHHHTTCSEEEEECCT-TCCC------CCCHHHHHHHHHHHHHHHTCSBCCEEE-ECCSCCCCSEE
T ss_pred EeccchHHHHHHHHHHHHhCCCEEEEEEEE-EEec------hhhHHHHHHHHHHHHHHcCCCccceEE-eccHHHHHhhC
Confidence 999999999999999999999999999999 9887 358999999999999999999999999 99999998643
Q ss_pred ccccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheeeecccccc
Q psy15223 363 ISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGVWGE 442 (2492)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~v~~ly~~ 442 (2492)
. .. +++++... +..+. ++++.++||||||||++|++.+.++ |++|||||||||+|||+++|+++++..++.
T Consensus 163 ~--~~-lv~e~~~~-l~~~~----~~~i~l~IGPEGGfs~~Ei~~~~~~-f~~vsLG~rILRtETA~i~ala~l~~~~~~ 233 (234)
T 1z85_A 163 I--TL-DLDASQNL-LDANL----EGSITVVVGPEGGFSEKERELLRSS-TTIVSLGKKILRFETAAILTVGYIALKKQK 233 (234)
T ss_dssp E--EE-CC---CCC-SSSCC----CSSEEEEECCTTCCCHHHHHHHHHH-SEEC------CCHHHHHHHHHHHHHHHTTC
T ss_pred C--Ce-EEECCcch-hhhcc----CCCEEEEEcCCCCCCHHHHHHHHhh-CeEccCCCCeeEhHHHHHHHHHHHHHHhcC
Confidence 2 23 44544433 32221 2579999999999999999999999 999999999999999999999998876653
No 38
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=2.4e-37 Score=392.98 Aligned_cols=143 Identities=23% Similarity=0.239 Sum_probs=127.7
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccCC
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY 2200 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~~ 2200 (2492)
+.|++.+|.|++|+|+.++++++.++.++ ||.++++|+.+++.+|+|||||+||+|+|.+++++||+|++|||++++++
T Consensus 223 ~~dih~gG~Dl~FpHheneiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~y 301 (462)
T 3tqo_A 223 PFDIHGGGLDLKFPHHENEIAQSEAGEEK-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHY 301 (462)
T ss_dssp SEEEEEEEGGGTTTHHHHHHHHHHHHHSS-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCT
T ss_pred CeEEEccccccccHHHHhHHHHHHHHcCC-CcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCC
Confidence 57999999999999999999999999988 99999999988999999999999999999999999999999999999999
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHHH
Q psy15223 2201 SKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIVS 2279 (2492)
Q Consensus 2201 ~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a~~ 2279 (2492)
+++++||++.++++.+.+++|+|+++++... . + + .+..+.+.+.++|+ +|+...|+.
T Consensus 302 r~~l~fs~~~l~~a~~~l~rl~~~~~~~~~~----~------~-------~-----~~~~~~~~~~~a~~dD~nt~~a~~ 359 (462)
T 3tqo_A 302 RNPLSYSKENLENGRLALERFYLALRGLPVV----N------H-------E-----KTSSYTDRFYEAMDDDFNTPIAFA 359 (462)
T ss_dssp TSCEEECHHHHHHHHHHHHHHHHHHTTCCC----------------------------CHHHHHHHHHHTBTCCHHHHHH
T ss_pred CCCcCcCHHHHHHHHHHHHHHHHHHHHhhhc----c------c-------h-----hHHHHHHHHHHHHHhccChHHHHH
Confidence 9999999999999999999999999865210 0 0 0 13456778889997 899999999
Q ss_pred HHHHHHH
Q psy15223 2280 KLQIYCS 2286 (2492)
Q Consensus 2280 ~l~~f~~ 2286 (2492)
.|++++.
T Consensus 360 ~l~~~~~ 366 (462)
T 3tqo_A 360 LLFEMVR 366 (462)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999984
No 39
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=3.4e-37 Score=391.51 Aligned_cols=149 Identities=23% Similarity=0.223 Sum_probs=130.7
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCc
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY 1050 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~ 1050 (2492)
+.|+|.+|.|++++|+.++++++.++.|. ||.++++|+.+++.+|+|||||+||+|+|.+++++||+|++|||+++++|
T Consensus 223 ~~dih~gG~Dl~FpHheneiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~y 301 (462)
T 3tqo_A 223 PFDIHGGGLDLKFPHHENEIAQSEAGEEK-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHY 301 (462)
T ss_dssp SEEEEEEEGGGTTTHHHHHHHHHHHHHSS-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCT
T ss_pred CeEEEccccccccHHHHhHHHHHHHHcCC-CcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCC
Confidence 57999999999999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHHH
Q psy15223 1051 SKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIVS 1129 (2492)
Q Consensus 1051 ~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~~ 1129 (2492)
+++++||++.++++.+.+++|+|+++++... . . + .+..+...+.++|+ .|+...|+.
T Consensus 302 r~~l~fs~~~l~~a~~~l~rl~~~~~~~~~~----~-------~------~-----~~~~~~~~~~~a~~dD~nt~~a~~ 359 (462)
T 3tqo_A 302 RNPLSYSKENLENGRLALERFYLALRGLPVV----N-------H------E-----KTSSYTDRFYEAMDDDFNTPIAFA 359 (462)
T ss_dssp TSCEEECHHHHHHHHHHHHHHHHHHTTCCC----------------------------CHHHHHHHHHHTBTCCHHHHHH
T ss_pred CCCcCcCHHHHHHHHHHHHHHHHHHHHhhhc----c-------c------h-----hHHHHHHHHHHHHHhccChHHHHH
Confidence 9999999999999999999999999875321 0 0 0 13456778888998 899999999
Q ss_pred HHHHHHhhhhhhhHH
Q psy15223 1130 KLQIYCSEDLGSFYL 1144 (2492)
Q Consensus 1130 ~l~~f~~~~ls~~Yl 1144 (2492)
.|++++.. .|.++
T Consensus 360 ~l~~~~~~--~n~~~ 372 (462)
T 3tqo_A 360 LLFEMVRE--INRFR 372 (462)
T ss_dssp HHHHHHHH--HHHHH
T ss_pred HHHHHHHH--Hhhhh
Confidence 99999842 34444
No 40
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=4.1e-37 Score=391.13 Aligned_cols=154 Identities=15% Similarity=0.129 Sum_probs=116.5
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEe-eEEEcCCCccccccCCCccCcchhhhh-cChhhHHHHhhcc
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVAST 1048 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~h-G~vld~~G~KMSKS~GN~i~p~~ii~~-yGaD~lRl~l~s~ 1048 (2492)
|.|+|.+|+|++++|+.+.++++.++++. ||.++++| ||+. .+|+|||||+||+|+|.+++++ ||+|++|||++++
T Consensus 253 ~~DIH~gG~DLifpHheneiAqs~a~~g~-~~~~~w~H~g~v~-~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~ 330 (501)
T 3sp1_A 253 ALDIHLGGVDHIGVHHINEIAIAECFLNK-KWCDVFVHGEFLI-MDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTS 330 (501)
T ss_dssp CCCEEEEEGGGTTTHHHHHHHHHHHHHTS-CCCSEEEEECCEE-CC----------CCCHHHHHHTTCCHHHHHHHHHTS
T ss_pred CceEEeeccccccchHHHHHHHHHHccCC-CCCeEEEEeeeEe-eCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhc
Confidence 57999999999999999999999999985 99999999 7776 7999999999999999999999 9999999999999
Q ss_pred CcccccccCHHHHHHHHHH----HHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccc
Q psy15223 1049 DYSKDLSISNEILNRVVET----YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYE 1123 (2492)
Q Consensus 1049 ~~~~d~~fs~~~l~~~~~~----~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~ 1123 (2492)
+|++|++||++.++++.+. +++|+|+++.+......-... ... ... ...+..+...+.+||+ .++
T Consensus 331 ~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~-~~~-~~~--------~~~~~~~~~~f~~am~dDln 400 (501)
T 3sp1_A 331 HYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNK-DLK-NFG--------FSVEKEYYDSFVEKISFDLN 400 (501)
T ss_dssp CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHS-CTT-SCS--------SHHHHHHHHHHHHHHHBTSC
T ss_pred cCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccccc-ccc-chh--------hhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999 899999887542111000000 000 000 1234567778889998 899
Q ss_pred hHHHHHHHHHHHh
Q psy15223 1124 FHMIVSKLQIYCS 1136 (2492)
Q Consensus 1124 f~~a~~~l~~f~~ 1136 (2492)
...|+..|++++.
T Consensus 401 t~~al~~l~~~~~ 413 (501)
T 3sp1_A 401 VAQGLALLWEIIK 413 (501)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999984
No 41
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=4.6e-36 Score=340.27 Aligned_cols=184 Identities=33% Similarity=0.593 Sum_probs=160.5
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
.|+++||+|++.+.... ...+.+++||||||||||||+||||||+++|++++..+ +.+++++++++++
T Consensus 2 ~S~~i~V~F~~~~~~~~---------~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~---~~~i~a~~~~~~~ 69 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKKL---------GLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGD---EALILEEGLGRKL 69 (186)
T ss_dssp -CCEEEEEEEBSCGGGG---------TCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETT---EEEEEEHHHHHHH
T ss_pred ccceEEEEEEeCCCccc---------cCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCC---cchHHHHHHHHHH
Confidence 58999999999753100 01257999999999999999999999999999999855 7899999999998
Q ss_pred HHHcCCcCcEEEEEecccccCCEEecCCcccccCC-CceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCC
Q psy15223 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINY-NRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSD 762 (2492)
Q Consensus 684 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~-~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~ 762 (2492)
.++ +...+.+++|.+|.|++|.||+.. . ++.+||+.++||+++.|||+||+|||||++||++|++||| +
T Consensus 70 ~~~---~~~~~~~~~G~~l~g~~~~~P~~~----~~~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L---~ 139 (186)
T 1wny_A 70 LGE---GTPVLKTFPGKALEGLPYTPPYPQ----ALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGL---P 139 (186)
T ss_dssp HCT---TSCEEEEEEHHHHTTCBBCCSSCC----CCSSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTC---C
T ss_pred hhc---CcEEEEEEEcccccCcEEECCccc----cCCCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCC---c
Confidence 764 334569999999999999999951 1 5789999999999999999999999999999999999999 8
Q ss_pred cccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccc
Q psy15223 763 IINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHS 811 (2492)
Q Consensus 763 ~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~ 811 (2492)
++++||++|+|+++ + |.|+++++|++.|++.|+++|.+++.++|+||
T Consensus 140 i~~~id~~G~~~~~-~-~~Gl~v~~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 140 LLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp CCCCBCTTSBBCST-T-CTTCBHHHHHHHHHHHHHHTTCEEEEEC----
T ss_pred eEeeeCCCccCccC-C-CCCcCHHHHHHHHHHHHHHCCCeecceeEEcC
Confidence 88999999999988 7 99999999999999999999999999999996
No 42
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=3.1e-36 Score=383.11 Aligned_cols=154 Identities=15% Similarity=0.129 Sum_probs=115.9
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEe-eeEEcCCCceeeeccCCccCcchhhhc-cChhHHHHHHhcc
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVAST 2198 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~l~s~ 2198 (2492)
|.|+|.+|+|++|+|+.+.++++.+++++ ||.++++| ||+. .+|+|||||+||+|+|.+++++ ||+|++|||++++
T Consensus 253 ~~DIH~gG~DLifpHheneiAqs~a~~g~-~~~~~w~H~g~v~-~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~ 330 (501)
T 3sp1_A 253 ALDIHLGGVDHIGVHHINEIAIAECFLNK-KWCDVFVHGEFLI-MDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTS 330 (501)
T ss_dssp CCCEEEEEGGGTTTHHHHHHHHHHHHHTS-CCCSEEEEECCEE-CC----------CCCHHHHHHTTCCHHHHHHHHHTS
T ss_pred CceEEeeccccccchHHHHHHHHHHccCC-CCCeEEEEeeeEe-eCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhc
Confidence 67999999999999999999999999885 99999999 7776 7999999999999999999999 9999999999999
Q ss_pred CCCCcccccHHHHHHHHHH----HHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccc
Q psy15223 2199 DYSKDLSISNEILNRVVET----YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYE 2273 (2492)
Q Consensus 2199 ~~~~d~~fs~~~l~~~~~~----~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~ 2273 (2492)
++++|++||++.++++.+. +++|+|+++.+.......... ... ... ...+..+.+.+.++|+ +++
T Consensus 331 ~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~-~~~-~~~--------~~~~~~~~~~f~~am~dDln 400 (501)
T 3sp1_A 331 HYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNK-DLK-NFG--------FSVEKEYYDSFVEKISFDLN 400 (501)
T ss_dssp CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHS-CTT-SCS--------SHHHHHHHHHHHHHHHBTSC
T ss_pred cCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccccc-ccc-chh--------hhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999 899998887532110000000 000 000 1134566778889997 899
Q ss_pred HHHHHHHHHHHHH
Q psy15223 2274 FHMIVSKLQIYCS 2286 (2492)
Q Consensus 2274 f~~a~~~l~~f~~ 2286 (2492)
...|+..|++++.
T Consensus 401 t~~al~~l~~~~~ 413 (501)
T 3sp1_A 401 VAQGLALLWEIIK 413 (501)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999984
No 43
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=100.00 E-value=3e-36 Score=357.14 Aligned_cols=165 Identities=33% Similarity=0.580 Sum_probs=150.0
Q ss_pred ccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCC
Q psy15223 1407 RNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIY 1486 (2492)
Q Consensus 1407 r~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~ 1486 (2492)
....++|++|+||+++|||+|||||||||++|+|+.|+||++++++++..+|.+||++|++||||||+|+++|+|.++.+
T Consensus 76 ~~~~v~L~~al~K~~r~e~ilqkatELGv~~I~p~~t~rsv~~~~~~k~~~k~~Rw~~I~~eAaeQs~R~~iP~v~~~~~ 155 (251)
T 4e8b_A 76 SPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMD 155 (251)
T ss_dssp CSSEEEEEEECCSSSHHHHHHHHHHHTTCCEEEEEECTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCBCCCEE
T ss_pred CCceEEEEEEeechhHHHHHHHHHHhhCCCEEEEEEeeeEEeecchhhhhhHHHHHHHHHHHHHHhcCCCcCcEECCcCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhcccccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchhhhh
Q psy15223 1487 FNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALA 1566 (2492)
Q Consensus 1487 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~~~ 1566 (2492)
|++|+.......+++++++....+.... ...++++++||||||||++|+++|.++||++|||||||||||||+++|++
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~IGPEGGfs~~Ei~~~~~~Gf~~vsLG~rILRtETA~i~als 233 (251)
T 4e8b_A 156 LEAWCAEQDEGLKLNLHPRASNSINTLP--LPVERVRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAIT 233 (251)
T ss_dssp HHHHHHCCCSSEEEEECTTCSCBGGGSC--SCCCEEEEEECCTTCCCHHHHHHHHHTTCEEEBCCSSCCCHHHHHHHHHH
T ss_pred HHHHHhhcCcCceEeechhhhCchhhcc--ccCCcEEEEECCCCCCCHHHHHHHHHCCCEEecCCCCceeHHHHHHHHHH
Confidence 9999998777777888877665544332 23568999999999999999999999999999999999999999999999
Q ss_pred hhccccC
Q psy15223 1567 ILNGELS 1573 (2492)
Q Consensus 1567 ~~~a~l~ 1573 (2492)
++++.+-
T Consensus 234 ~l~~~~G 240 (251)
T 4e8b_A 234 ALQVRFG 240 (251)
T ss_dssp HHHHHTS
T ss_pred HHHHHHc
Confidence 9987654
No 44
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=6.4e-35 Score=374.20 Aligned_cols=141 Identities=21% Similarity=0.245 Sum_probs=114.3
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEe-eEEEcCCCccccccCCCccCcchhhhh-cChhhHHHHhhc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVAS 1047 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~h-G~vld~~G~KMSKS~GN~i~p~~ii~~-yGaD~lRl~l~s 1047 (2492)
.|.|+|++|+||+++|+.+...++.++.+..||+++++| ||+. .+|+|||||+||+|+|.+++++ ||+|++|||+++
T Consensus 243 ~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~ 321 (414)
T 3c8z_A 243 TGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFS 321 (414)
T ss_dssp SCEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC--------------CBHHHHHHTTCCHHHHHHHHHT
T ss_pred CCceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCCeEcccccCCcCCHHHHhhccCCcchheeEEEe
Confidence 389999999999999999999999999888899999999 6766 6999999999999999999999 999999999999
Q ss_pred cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH-hccchHH
Q psy15223 1048 TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHM 1126 (2492)
Q Consensus 1048 ~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-~~~~f~~ 1126 (2492)
+++++|++||++.+.++.+.+++|+|+++++ .+ + .++++.+++.++| ++|+|++
T Consensus 322 ~~~~~d~~fs~~~l~~~~~~l~~l~n~~~~~----~~--------~-------------~~~~~~~~v~~a~~d~~~~~~ 376 (414)
T 3c8z_A 322 GHYREDRFWSNEVLDEANARLARWRSATALP----EA--------P-------------DATDVIARVRQYLADDLDTPK 376 (414)
T ss_dssp SCTTSCBCCCHHHHHHHHHHHHHHHHHHTSS----CB--------S-------------CCHHHHHHHHHHHHBTCCHHH
T ss_pred cCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc----cc--------h-------------hHHHHHHHHHHHHHhcCCHHH
Confidence 9999999999999999999999999987643 10 0 1256788899999 7999999
Q ss_pred HHHHHHHHHh
Q psy15223 1127 IVSKLQIYCS 1136 (2492)
Q Consensus 1127 a~~~l~~f~~ 1136 (2492)
|+..|++|+.
T Consensus 377 Al~~i~~~~~ 386 (414)
T 3c8z_A 377 ALAALDGWCT 386 (414)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999994
No 45
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.2e-35 Score=378.53 Aligned_cols=141 Identities=21% Similarity=0.245 Sum_probs=113.7
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEe-eeEEcCCCceeeeccCCccCcchhhhc-cChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~l~s 2197 (2492)
.|+|+|++|+||+++|+....+.+.++.+..||+++++| ||+. .+|+|||||+||+|+|.+++++ ||+|++|||+++
T Consensus 243 ~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~ 321 (414)
T 3c8z_A 243 TGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFS 321 (414)
T ss_dssp SCEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC--------------CBHHHHHHTTCCHHHHHHHHHT
T ss_pred CCceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCCeEcccccCCcCCHHHHhhccCCcchheeEEEe
Confidence 489999999999999999999999999888899999999 6766 6999999999999999999999 999999999999
Q ss_pred cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH-hcccHHH
Q psy15223 2198 TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHM 2276 (2492)
Q Consensus 2198 ~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~ 2276 (2492)
+++++|++|+++.+.++.+.+++|+|+++++ . . + .++++.+++.++| ++|+|++
T Consensus 322 ~~~~~d~~fs~~~l~~~~~~l~~l~n~~~~~----~----~----~-------------~~~~~~~~v~~a~~d~~~~~~ 376 (414)
T 3c8z_A 322 GHYREDRFWSNEVLDEANARLARWRSATALP----E----A----P-------------DATDVIARVRQYLADDLDTPK 376 (414)
T ss_dssp SCTTSCBCCCHHHHHHHHHHHHHHHHHHTSS----C----B----S-------------CCHHHHHHHHHHHHBTCCHHH
T ss_pred cCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc----c----c----h-------------hHHHHHHHHHHHHHhcCCHHH
Confidence 9999999999999999999999999987543 1 0 0 1256788899999 7999999
Q ss_pred HHHHHHHHHH
Q psy15223 2277 IVSKLQIYCS 2286 (2492)
Q Consensus 2277 a~~~l~~f~~ 2286 (2492)
|+..|++|+.
T Consensus 377 Al~~i~~~~~ 386 (414)
T 3c8z_A 377 ALAALDGWCT 386 (414)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999994
No 46
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=100.00 E-value=6.2e-36 Score=355.21 Aligned_cols=163 Identities=36% Similarity=0.586 Sum_probs=139.5
Q ss_pred cceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCCh
Q psy15223 1408 NFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYF 1487 (2492)
Q Consensus 1408 ~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~ 1487 (2492)
..+++|++|+||+++|||+|||||||||++|+|+.|+||++++++++.++|.+||++|+++|||||+|+++|+|.+|.+|
T Consensus 79 ~~~l~L~~al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~~ 158 (257)
T 1vhy_A 79 HLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKL 158 (257)
T ss_dssp SSCEEEEEEC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEH
T ss_pred CceEEEEEecCchHHHHHHHHHHHhhCcCEEEEEEeEEEEEeccchhhhhHHHHHHHHHHHHHHHcCCCcCcEEeccCCH
Confidence 45799999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred hHHHhcccccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchhhhhh
Q psy15223 1488 NNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAI 1567 (2492)
Q Consensus 1488 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~~~~ 1567 (2492)
++|+........++++++....+.... ....++++++||||||||++|+++|.++||++|||||||||||||+++|++.
T Consensus 159 ~~~l~~~~~~~~l~~~~~~~~~l~~~~-~~~~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i~als~ 237 (257)
T 1vhy_A 159 QDWCAENDGALKLNLHPRAHYSIKTLP-TIPAGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISA 237 (257)
T ss_dssp HHHHTCCSSCEEEEECTTCCCBGGGCC-CCCTTCEEEEECCTTCCCHHHHHHHHHTTCEEEBCCSSCCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEcCCCccchhhhh-ccCCCeEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeehHHHHHHHHHH
Confidence 999985444556777765443332221 1123589999999999999999999999999999999999999999999998
Q ss_pred hccc
Q psy15223 1568 LNGE 1571 (2492)
Q Consensus 1568 ~~a~ 1571 (2492)
+++.
T Consensus 238 l~~~ 241 (257)
T 1vhy_A 238 LQIC 241 (257)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 47
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=100.00 E-value=2e-35 Score=353.09 Aligned_cols=165 Identities=30% Similarity=0.400 Sum_probs=131.5
Q ss_pred ccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCC
Q psy15223 1407 RNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIY 1486 (2492)
Q Consensus 1407 r~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~ 1486 (2492)
....++|++|+||+++|||+|||||||||++|+|+.|+||++++++++..+|.+||++|+++|||||+|+++|+|.+|.+
T Consensus 79 ~~~~v~L~~al~K~~r~e~ilqkatELGV~~I~p~~s~Rsv~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~ 158 (268)
T 1vhk_A 79 LPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHS 158 (268)
T ss_dssp CSSEEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBC
T ss_pred CCccEEEEEeeecCccHHHHHHHHHHhCcCEEEEEEeeeeeeecccchhhhHHHHHHHHHHHHHHHcCCCCCcEEecCCC
Confidence 34579999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred hhHHHhcccc-cceEEeccCCccccccc------ccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeec
Q psy15223 1487 FNNWLISKIS-CARILLSPRGRKKLSCW------ANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTET 1559 (2492)
Q Consensus 1487 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ET 1559 (2492)
|++|+..... ...++++++.......+ ......++++|+||||||||++|+++|.++||++||||||||||||
T Consensus 159 ~~~~l~~~~~~~~~lv~~e~~~~~~~~l~~~~~~~~~~~~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtET 238 (268)
T 1vhk_A 159 FQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTET 238 (268)
T ss_dssp HHHHHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTTCCCHHHHHHHHHTTCEEECCCSSCCCTTT
T ss_pred HHHHHhhCccCCeEEEEecCcccccccccccccchhccCCCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeehHH
Confidence 9999985433 34566665532211111 1112224899999999999999999999999999999999999999
Q ss_pred cchhhhhhhccc
Q psy15223 1560 ASLVALAILNGE 1571 (2492)
Q Consensus 1560 A~~~~~~~~~a~ 1571 (2492)
|+++|++.+++.
T Consensus 239 A~i~als~l~~~ 250 (268)
T 1vhk_A 239 APLYALSAISYQ 250 (268)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988643
No 48
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=8.2e-35 Score=330.02 Aligned_cols=185 Identities=34% Similarity=0.606 Sum_probs=158.7
Q ss_pred ecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHH
Q psy15223 1754 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 1833 (2492)
Q Consensus 1754 ~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 1833 (2492)
.|+++||+|++.+.... ...+.+++||||||||||||+||||||+++|++++..+ +.+++++++++++
T Consensus 2 ~S~~i~V~F~~~~~~~~---------~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~---~~~i~a~~~~~~~ 69 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKKL---------GLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGD---EALILEEGLGRKL 69 (186)
T ss_dssp -CCEEEEEEEBSCGGGG---------TCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETT---EEEEEEHHHHHHH
T ss_pred ccceEEEEEEeCCCccc---------cCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCC---cchHHHHHHHHHH
Confidence 58999999998653100 01257999999999999999999999999999999753 6799999999988
Q ss_pred HHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCc
Q psy15223 1834 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 1913 (2492)
Q Consensus 1834 ~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~ 1913 (2492)
.+. . ...+.+++|.+|.|++|.||+... .++.+||+.++||++++|||+||+|||||++||++|++||| ++
T Consensus 70 ~~~-~--~~~~~~~~G~~l~g~~~~~P~~~~---~~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L---~i 140 (186)
T 1wny_A 70 LGE-G--TPVLKTFPGKALEGLPYTPPYPQA---LEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGL---PL 140 (186)
T ss_dssp HCT-T--SCEEEEEEHHHHTTCBBCCSSCCC---CSSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTC---CC
T ss_pred hhc-C--cEEEEEEEcccccCcEEECCcccc---CCCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCC---ce
Confidence 764 2 223489999999999999999610 05789999999999999999999999999999999999999 89
Q ss_pred ccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccc
Q psy15223 1914 INPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHS 1961 (2492)
Q Consensus 1914 ~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~ 1961 (2492)
++++|++|+|+++ + |.|+++++|++.|++.|+++|.+++.++|.||
T Consensus 141 ~~~id~~G~~~~~-~-~~Gl~v~~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 141 LKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp CCCBCTTSBBCST-T-CTTCBHHHHHHHHHHHHHHTTCEEEEEC----
T ss_pred EeeeCCCccCccC-C-CCCcCHHHHHHHHHHHHHHCCCeecceeEEcC
Confidence 9999999999987 7 99999999999999999999999999999996
No 49
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=100.00 E-value=4.7e-35 Score=342.18 Aligned_cols=156 Identities=29% Similarity=0.366 Sum_probs=136.8
Q ss_pred cce-eEEEEec-CCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCC
Q psy15223 1408 NFV-KNKIQAL-PENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNI 1485 (2492)
Q Consensus 1408 ~~~-~~l~~a~-~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~ 1485 (2492)
... ++|++|+ ||+++|||+|||||||||++|+|+.|+||++++ ++..+|.+||++|+++|||||+|+++|+|.+|.
T Consensus 69 ~~~~i~L~~al~~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~--~~~~~k~~Rw~~i~~eAaeQs~r~~iP~v~~~~ 146 (229)
T 2egv_A 69 PPKDITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKE--EAILKKTEKWKRIVIEAMKQSRRPIPMEIKKPV 146 (229)
T ss_dssp CSSEEEEEEECCSSTHHHHHHHHHHHHHTCCEEEEEECTTSCCCH--HHHHHHHHHHHHHHHHHHHHHTCCSCCEECCCE
T ss_pred CCceEEEEEecccCHHHHHHHHHHHHHhCcCEEEEEEeEEeeecc--cchhhHHHHHHHHHHHHHHHcCCCcCcEEcccC
Confidence 456 9999999 999999999999999999999999999999998 566789999999999999999999999999999
Q ss_pred ChhHHHhcccccceEEeccCCcccccccccCCCCC-ceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchhh
Q psy15223 1486 YFNNWLISKISCARILLSPRGRKKLSCWANNQSPQ-EVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVA 1564 (2492)
Q Consensus 1486 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~ 1564 (2492)
+|++|+.... ...++++++....+... ...+ +++++||||||||++|+++|.++||++|||||||||||||+++|
T Consensus 147 ~~~~~l~~~~-~~~li~~~~~~~~l~~~---~~~~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i~a 222 (229)
T 2egv_A 147 RLSDLIPESE-ENIILDNFYEGVKPKDV---NLEAKTYSVVVGPEGGFSKRESQILREKGFKSVLLEPYTLRTETAVVSI 222 (229)
T ss_dssp EGGGCCCCSS-EEEEECTTSCCBCGGGS---CTTCSEEEEEECCTTCCCHHHHHHHHHTTCEEECCSSSCCCHHHHHHHH
T ss_pred CHHHHHhhCC-CCEEEEcCCccchhhhh---ccCCCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeEhHHHHHHH
Confidence 9999987533 45666676544333221 1234 79999999999999999999999999999999999999999999
Q ss_pred hhhhc
Q psy15223 1565 LAILN 1569 (2492)
Q Consensus 1565 ~~~~~ 1569 (2492)
++.+.
T Consensus 223 la~~~ 227 (229)
T 2egv_A 223 VSILM 227 (229)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99874
No 50
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=100.00 E-value=5.8e-35 Score=341.17 Aligned_cols=156 Identities=28% Similarity=0.399 Sum_probs=137.0
Q ss_pred cceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCCh
Q psy15223 1408 NFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYF 1487 (2492)
Q Consensus 1408 ~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~ 1487 (2492)
..+++|++|+||+++|||+|||||||||++|+|+.|+||++++ +..+|.+||++|+++|||||+|+++|+|.+|.+|
T Consensus 70 ~~~v~L~~al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~---~~~~k~~Rw~~i~~eAaeQs~r~~~P~v~~~~~~ 146 (228)
T 1v6z_A 70 GVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKE---MGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPL 146 (228)
T ss_dssp SSCEEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSC---CCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEG
T ss_pred CccEEEEEEecchHHHHHHHHHHHhhCCCEEEEEEEEEEEeec---cccchHHHHHHHHHHHHHHcCCCcCcEEecCCCH
Confidence 4579999999999999999999999999999999999999998 4467899999999999999999999999999999
Q ss_pred hHHHhcccccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchhhhhh
Q psy15223 1488 NNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAI 1567 (2492)
Q Consensus 1488 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~~~~ 1567 (2492)
++|+. . ...++++++....+.... . ..++++++||||||||++|++++.++||++|||||||||||||+++|++.
T Consensus 147 ~~~l~--~-~~~l~~~~~~~~~l~~~~-~-~~~~~~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i~ala~ 221 (228)
T 1v6z_A 147 KAVPQ--V-AQGLVAHVGATARVREVL-D-PEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLAL 221 (228)
T ss_dssp GGCCC--C-SSEEEECTTCCCCHHHHC-C-TTSCEEEEECCTTCCCHHHHHHHHHHTEEEECCCSSCCCHHHHHHHHHHH
T ss_pred HHHhh--C-CCEEEEeCCCccchhhhc-c-CCCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeEeHHHHHHHHHH
Confidence 99987 2 566777766543322221 1 13589999999999999999999999999999999999999999999998
Q ss_pred hccc
Q psy15223 1568 LNGE 1571 (2492)
Q Consensus 1568 ~~a~ 1571 (2492)
+++.
T Consensus 222 ~~~~ 225 (228)
T 1v6z_A 222 CTAG 225 (228)
T ss_dssp HTGG
T ss_pred HHHH
Confidence 8764
No 51
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=100.00 E-value=5.5e-34 Score=337.49 Aligned_cols=159 Identities=28% Similarity=0.299 Sum_probs=133.7
Q ss_pred cccceeEEEEecCC-CchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccC
Q psy15223 1406 RRNFVKNKIQALPE-NRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPN 1484 (2492)
Q Consensus 1406 rr~~~~~l~~a~~k-~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~ 1484 (2492)
.....++|++|+|| ++||||+|||||||||++|+|+.|+||+++ .+|.+||++|+++|||||+|+++|+|.+|
T Consensus 74 e~~~~i~L~~al~K~~dr~d~iiqKatELGV~~I~p~~s~rs~k~------~~k~eRw~~I~~eAaeQs~R~~~P~v~~~ 147 (257)
T 3kw2_A 74 PWRDRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERR------RIKAERLERIAISAMKQSLKASFPVIRVN 147 (257)
T ss_dssp SSCSCEEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCS------CCCHHHHHHHHHHHHHHTTCSBCCEEEEE
T ss_pred CCCCceEEEEecCCCcchHHHHHHHHHhhCCCEEEEEEeecchhh------hhhHHHHHHHHHHHHHHcCCCcCCEecCc
Confidence 34567999999999 599999999999999999999999999754 25789999999999999999999999999
Q ss_pred CChhHHHhc-ccccceEEeccCC--------cccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccc
Q psy15223 1485 IYFNNWLIS-KISCARILLSPRG--------RKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRIL 1555 (2492)
Q Consensus 1485 ~~~~~~l~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rIL 1555 (2492)
.+|++|+.. .....++++++.. ...+..... ...++++++||||||||++|+++|.++||++||||||||
T Consensus 148 ~~~~~~l~~~~~~~~~li~~~~e~~~~~~~~~~~l~~~~~-~~~~~v~l~IGPEGGfs~~Ei~~~~~~Gf~~vsLG~rIL 226 (257)
T 3kw2_A 148 IPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDFY-HVGQDVLILIGPEGDFSPSEVESALLAGFAPVSLGESRL 226 (257)
T ss_dssp EEHHHHHHHSCTTSEEEEECCCTTCC-----CCCCGGGTC-CTTSCEEEEECCTTCCCHHHHHHHHHHTCEEECCCSSCC
T ss_pred CCHHHHHhhccccCCEEEEEcccccccccccccchhHhhc-cCCCcEEEEECCCCCCCHHHHHHHHHCCCEEEcCCCCcc
Confidence 999999976 3344556666322 122211111 125689999999999999999999999999999999999
Q ss_pred eeeccchhhhhhhccc
Q psy15223 1556 RTETASLVALAILNGE 1571 (2492)
Q Consensus 1556 R~ETA~~~~~~~~~a~ 1571 (2492)
|||||+++|++++++.
T Consensus 227 RtETA~i~als~~~~~ 242 (257)
T 3kw2_A 227 RTETAGLVACQWIHTL 242 (257)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999988643
No 52
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.98 E-value=2.6e-32 Score=352.77 Aligned_cols=150 Identities=20% Similarity=0.212 Sum_probs=129.6
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEe-eeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccC
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 2199 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~ 2199 (2492)
|.|+|++|+|++|+|+.....++.++.|. ||.++++| ||+. .+|+|||||+||+|+|.+++++||+|++|||+++++
T Consensus 220 ~~dih~gG~Dl~fpH~~~~~aq~~a~~g~-~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~ 297 (461)
T 1li5_A 220 HFDIHGGGSDLMFPHHENEIAQSTCAHDG-QYVNYWMHSGMVM-VDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGH 297 (461)
T ss_dssp SEEEEECBGGGTTTHHHHHHHHHHHHSSS-CCEEEECCBCCEE-ETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSC
T ss_pred CceEEeccCccCchHHHHHHHHHHHhcCC-CCCcEEEEeeEEE-ECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCC
Confidence 68999999999999988888888888776 78888777 8887 489999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH-hcccHHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMIV 2278 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~a~ 2278 (2492)
+++|++||++.+.++.+.+.+++|+++++. . . .+ + | .+..+.+.+.++| ++|+++.|+
T Consensus 298 ~~~~~~fs~~~l~~~~~~l~rl~n~~~~~~----~-~-----~~-----~-d-----~l~~~~~~~~~am~dd~n~~~Al 356 (461)
T 1li5_A 298 YRSQLNYSEENLKQARAALERLYTALRGTD----K-T-----VA-----P-A-----GGEAFEARFIEAMDDDFNTPEAY 356 (461)
T ss_dssp TTSCEEECHHHHHHHHHHHHHHHHHHTTCC----T-T-----SC-----C-C-----SCHHHHHHHHHHHHBTSCHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhh----c-C-----CC-----H-H-----HHHHHHHHHHHHHHhccCHHHHH
Confidence 999999999999999999999999987541 1 0 11 1 2 3567788999999 899999999
Q ss_pred HHHHHHHHhhhhhhHHH
Q psy15223 2279 SKLQIYCSEDLGSFYLD 2295 (2492)
Q Consensus 2279 ~~l~~f~~~~ls~~Yle 2295 (2492)
..|++|+. ..|.|++
T Consensus 357 ~~l~~l~~--~~N~~~~ 371 (461)
T 1li5_A 357 SVLFDMAR--EVNRLKA 371 (461)
T ss_dssp HHHHHHHH--HHHHHHH
T ss_pred HHHHHHHH--HHHHHHh
Confidence 99999994 3688875
No 53
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.97 E-value=9e-32 Score=347.79 Aligned_cols=150 Identities=20% Similarity=0.210 Sum_probs=129.9
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEe-eEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccC
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 1049 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~h-G~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~ 1049 (2492)
|.|+|++|+|++++|+.....++.++.|. ||.++++| ||+. .+|+|||||+||+|+|.+++++||+|++|||+++++
T Consensus 220 ~~dih~gG~Dl~fpH~~~~~aq~~a~~g~-~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~ 297 (461)
T 1li5_A 220 HFDIHGGGSDLMFPHHENEIAQSTCAHDG-QYVNYWMHSGMVM-VDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGH 297 (461)
T ss_dssp SEEEEECBGGGTTTHHHHHHHHHHHHSSS-CCEEEECCBCCEE-ETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSC
T ss_pred CceEEeccCccCchHHHHHHHHHHHhcCC-CCCcEEEEeeEEE-ECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCC
Confidence 68999999999999998998888888776 78777777 8887 489999999999999999999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH-hccchHHHH
Q psy15223 1050 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMIV 1128 (2492)
Q Consensus 1050 ~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-~~~~f~~a~ 1128 (2492)
+++|++||++.+.++.+.+.+++|+++++.. . ++ + | .+..+.+.+.++| ++|+++.|+
T Consensus 298 ~~~~~~fs~~~l~~~~~~l~rl~n~~~~~~~-----~-----~~-----~-d-----~l~~~~~~~~~am~dd~n~~~Al 356 (461)
T 1li5_A 298 YRSQLNYSEENLKQARAALERLYTALRGTDK-----T-----VA-----P-A-----GGEAFEARFIEAMDDDFNTPEAY 356 (461)
T ss_dssp TTSCEEECHHHHHHHHHHHHHHHHHHTTCCT-----T-----SC-----C-C-----SCHHHHHHHHHHHHBTSCHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc-----C-----CC-----H-H-----HHHHHHHHHHHHHHhccCHHHHH
Confidence 9999999999999999999999999876411 0 11 1 2 3567888999999 899999999
Q ss_pred HHHHHHHhhhhhhhHHH
Q psy15223 1129 SKLQIYCSEDLGSFYLD 1145 (2492)
Q Consensus 1129 ~~l~~f~~~~ls~~Yl~ 1145 (2492)
..|++|+. ..|.|++
T Consensus 357 ~~l~~l~~--~~N~~~~ 371 (461)
T 1li5_A 357 SVLFDMAR--EVNRLKA 371 (461)
T ss_dssp HHHHHHHH--HHHHHHH
T ss_pred HHHHHHHH--HHHHHHh
Confidence 99999994 3577775
No 54
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=99.97 E-value=3.4e-33 Score=325.08 Aligned_cols=149 Identities=26% Similarity=0.283 Sum_probs=121.2
Q ss_pred ccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCC
Q psy15223 1407 RNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIY 1486 (2492)
Q Consensus 1407 r~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~ 1486 (2492)
....++|++|+||+++|||+|||||||||++|+|+.|+ |+++ .+|.+||++|+++|||||+|+++|+|. |.+
T Consensus 83 ~~~~i~L~~al~K~~r~e~ilqkatELGV~~I~p~~s~-s~~~------~~k~eRw~~i~~eAaeQs~R~~~P~v~-~~~ 154 (234)
T 1z85_A 83 PTEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFE-RSQH------EISLDKAKIVVREAAKQCKRYLFPKVS-FLE 154 (234)
T ss_dssp CSSCEEEEEECCCHHHHHHHHHHHHHTTCSEEEEECCT-TCCC------CCCHHHHHHHHHHHHHHHTCSBCCEEE-ECC
T ss_pred CCceEEEEEeccchHHHHHHHHHHHHhCCCEEEEEEEE-EEec------hhhHHHHHHHHHHHHHHcCCCccceEE-ecc
Confidence 34579999999999999999999999999999999999 9887 257899999999999999999999999 999
Q ss_pred hhHHHhcccccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchhhhh
Q psy15223 1487 FNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALA 1566 (2492)
Q Consensus 1487 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~~~ 1566 (2492)
|++|+.... .. ++ +++... +... . +++++++||||||||++|+++|.++ |++|||||||||||||+++|++
T Consensus 155 ~~~~l~~~~-~~-lv-~e~~~~-l~~~---~-~~~i~l~IGPEGGfs~~Ei~~~~~~-f~~vsLG~rILRtETA~i~ala 225 (234)
T 1z85_A 155 KLEFSGNVI-TL-DL-DASQNL-LDAN---L-EGSITVVVGPEGGFSEKERELLRSS-TTIVSLGKKILRFETAAILTVG 225 (234)
T ss_dssp SCCCCSEEE-EE-CC----CCC-SSSC---C-CSSEEEEECCTTCCCHHHHHHHHHH-SEEC------CCHHHHHHHHHH
T ss_pred HHHHHhhCC-Ce-EE-ECCcch-hhhc---c-CCCEEEEEcCCCCCCHHHHHHHHhh-CeEccCCCCeeEhHHHHHHHHH
Confidence 999987532 33 34 554433 2221 1 3589999999999999999999999 9999999999999999999999
Q ss_pred hhcccc
Q psy15223 1567 ILNGEL 1572 (2492)
Q Consensus 1567 ~~~a~l 1572 (2492)
.+++.+
T Consensus 226 ~l~~~~ 231 (234)
T 1z85_A 226 YIALKK 231 (234)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 887654
No 55
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=99.97 E-value=7.3e-31 Score=284.93 Aligned_cols=140 Identities=23% Similarity=0.307 Sum_probs=127.8
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
.++++||+|++ +. +.+++||||||||||||+||||||+++
T Consensus 3 ~~~~~~v~F~~-~~---------------~~~l~i~TTrP~Tl~g~~aiav~P~~~------------------------ 42 (147)
T 1wka_A 3 PGKLYTLRYEV-EG---------------GGFIEIATVRPETVFADQAIAVHPEDE------------------------ 42 (147)
T ss_dssp -CEEEEEEEEB-TT---------------SCEEEEEESCGGGGGGCCEEEECTTCT------------------------
T ss_pred cceEEEEEEEC-CC---------------CcEEEEEECCceecccceEEEECCCCc------------------------
Confidence 57899999998 42 358999999999999999999999953
Q ss_pred HHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCc
Q psy15223 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 763 (2492)
Q Consensus 684 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~ 763 (2492)
++ ++|.|++|.||+. ++++||+.++||+++.|||+||+|||||++||++|++||| ++
T Consensus 43 --~~------------~~l~g~~~~~P~~------~~~ipI~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L---~~ 99 (147)
T 1wka_A 43 --RY------------RHLLGKRARIPLT------EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGL---KP 99 (147)
T ss_dssp --TT------------GGGTTCEEECTTS------SCEEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHTC---CC
T ss_pred --hH------------HHhcCCEEECCCC------CCeeEEEEeCccccCCCCCcEEEccCCCHHHHHHHHHcCC---Cc
Confidence 11 5799999999998 8899999999999999999999999999999999999999 88
Q ss_pred ccccCCCCcccccCCC----CCCcchhhchHHHHHHHHhcCCeeeeeee
Q psy15223 764 INPVMDDGNFISTLPL----FGGMSIWKASKLICSYLKKSKTLFNIEMF 808 (2492)
Q Consensus 764 ~~~vd~~G~~~~~~~~----~~G~~v~~a~~~i~~~L~~~g~l~~~~~~ 808 (2492)
+++||++|+| +.++ |.|+++++|++.|++.|+++|.+++.++|
T Consensus 100 ~~~id~~G~~--~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 100 VSVINLEGRM--EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp CCSBCTTSBB--CSTTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ceEECCCCEE--cCCCcccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 8999999999 5666 99999999999999999999999998765
No 56
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=99.97 E-value=3.2e-32 Score=314.23 Aligned_cols=164 Identities=19% Similarity=0.196 Sum_probs=140.0
Q ss_pred CeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCce-----eeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEE
Q psy15223 633 KGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLL-----LILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINF 707 (2492)
Q Consensus 633 ~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~-----~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~ 707 (2492)
..+++||||||||||||+||||||+++|+.+...+ ... |++++++++++.++.+.+...+.+++|. |.|++|
T Consensus 37 ~~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~G~-l~G~~~ 113 (219)
T 3o0a_A 37 RIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACI--GERLGNACYSDVENFVEKMKKMSTRERTMEEDKEGV-FLGVYA 113 (219)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHH--HHHTTCCCHHHHHHHHHHHHTCCHHHHHSCSSCCEE-EEEEEE
T ss_pred CCEEEEEECCcchhhcccEEEECCCCcEEEEEecC--CccccchhHHHHHHHHHHHHhhccccceeEEEeeeE-EcCCEE
Confidence 47899999999999999999999999999877543 122 2788999988876554333333678898 999999
Q ss_pred ecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCC-------CCccccc----
Q psy15223 708 FHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD-------DGNFIST---- 776 (2492)
Q Consensus 708 ~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~-------~G~~~~~---- 776 (2492)
.|||+ ++.+||+.+|||+++.|||+||+|||||++||++|++||| +++++||+ +|.|+++
T Consensus 114 ~~Pl~------~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~L---pi~~vi~~~~~~~~~~g~ft~~g~~~ 184 (219)
T 3o0a_A 114 TNPAN------GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDL---PIKVVVKPEGAWDFEKGAYEGKGTLV 184 (219)
T ss_dssp ECTTT------CCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTC---CCCCCEECSSCCCTTTCCCCSCCEEC
T ss_pred ECCCC------CCeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCC---CceeeeCCccccccccccccccceEe
Confidence 99998 8999999999999999999999999999999999999999 77788886 5777765
Q ss_pred -CCCCCCcchhhchHHHHHHHHhcCCeeeeeee
Q psy15223 777 -LPLFGGMSIWKASKLICSYLKKSKTLFNIEMF 808 (2492)
Q Consensus 777 -~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~ 808 (2492)
.+.|.||++++|++.|++.|+++|.+.+...|
T Consensus 185 ~~~~~~Gl~~~eA~~~Ii~~L~~~g~l~~~~~y 217 (219)
T 3o0a_A 185 NSDGFDGLDSETAKRKITEWLQDRGLGEKKVSY 217 (219)
T ss_dssp SCGGGTTCBHHHHHHHHHHHHHHTTSEEEC---
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHCCCeeeeeee
Confidence 37899999999999999999999999887655
No 57
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=99.97 E-value=5.8e-32 Score=301.75 Aligned_cols=154 Identities=29% Similarity=0.593 Sum_probs=143.7
Q ss_pred ccccCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEE
Q psy15223 42 LIETDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV 121 (2492)
Q Consensus 42 ~~etD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~ 121 (2492)
..++|..||+.|+++|+++...|++|||||||+||+||++|+|......||+.|||++||++|++.++++++. |+||||
T Consensus 12 ~~~~d~~~M~~Al~~A~~a~~~g~~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~-g~tlYv 90 (179)
T 2nx8_A 12 SLEEQTYFMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLL-DTTLFV 90 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCT-TEEEEE
T ss_pred CcHHHHHHHHHHHHHHHhccccCCCCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCccc-ceEEEE
Confidence 3456788999999999999888999999999999999999999999999999999999999999998887776 999999
Q ss_pred cCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhccCccc
Q psy15223 122 TLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRNFVK 196 (2492)
Q Consensus 122 t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~~~~ 196 (2492)
|+|||+||++||+|+||+|||||+.+|+.++.|++++++...+++|+++|++|++++||.+|++.||+++|...+
T Consensus 91 TlEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~V~~gvl~~e~~~l~~~f~~~~r~~~~ 165 (179)
T 2nx8_A 91 TIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRERKK 165 (179)
T ss_dssp EECCBHHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGCTTTTCCCEEEECTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhCCCeEEEEEeCCCCcccccHHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988664443
No 58
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=99.97 E-value=1.7e-31 Score=295.76 Aligned_cols=152 Identities=45% Similarity=0.786 Sum_probs=142.1
Q ss_pred cCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCC
Q psy15223 45 TDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLE 124 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~E 124 (2492)
+|..||+.|+++|+++...|+.|||||||+||+||++|+|....+.||+.|||++||++|++.++.+.+. |+|||||+|
T Consensus 8 ~d~~~M~~A~~~A~~a~~~~~~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~-~~tlYvTlE 86 (168)
T 1z3a_A 8 SHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLI-DATLYVTLE 86 (168)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCT-TCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCccc-ccEEEEcCC
Confidence 5678999999999999877899999999999999999999999889999999999999999998877775 999999999
Q ss_pred ChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhccCcccc
Q psy15223 125 PCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRNFVKN 197 (2492)
Q Consensus 125 PC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~~~~~ 197 (2492)
||+||++||+|+||+|||||+.+|+.++.|++++++...+++|++.|++|++++||.+|++.||+++|..++.
T Consensus 87 PC~mC~~ai~~agi~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~~~~~ 159 (168)
T 1z3a_A 87 PCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKA 159 (168)
T ss_dssp CCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTCSSCCEEECCTTHHHHHHHHHHHHHHHHTTCC-
T ss_pred CcHHHHHHHHHHCcCEEEEEecCCCccccchhHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999887755544
No 59
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.97 E-value=1.1e-30 Score=309.83 Aligned_cols=173 Identities=19% Similarity=0.178 Sum_probs=143.3
Q ss_pred CCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCC-----cCcEEEEEecccccCC
Q psy15223 631 SGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF-----KGNIIGICKGIKLSKI 705 (2492)
Q Consensus 631 ~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~-----~~~~~~~~~G~~l~g~ 705 (2492)
+.+.+++||||||||||||+||||||+++|++++..+ ..+++++++.+.+++..+. +...+.+++|.+|.|+
T Consensus 30 ~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~L~G~ 106 (261)
T 2wfg_A 30 ENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGN---GDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGS 106 (261)
T ss_dssp TSEEEEEEEESCGGGGGGCCEEEECTTCEEEEEECST---TEEEEECHHHHHHHTTTTCSSSTTCCCCSEEEEHHHHTTC
T ss_pred CCCCEEEEEECCchHHhhhheEEECCCCceEEEEecC---ceEEEhHHHHHHHHHHHhhhhcccccEEEEEEecccccCC
Confidence 4568999999999999999999999999999999854 4577777788877765543 2233489999999999
Q ss_pred EEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHH-------cC-------CCCCCcccccCC--
Q psy15223 706 NFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKK-------QN-------MKDSDIINPVMD-- 769 (2492)
Q Consensus 706 ~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~-------~~-------l~~~~~~~~vd~-- 769 (2492)
+|.|||+. ++.+||++++||+++.|||+||+|||||++||.+|++ || | +++++||.
T Consensus 107 ~~~~Pl~~-----~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L---~i~~vId~~~ 178 (261)
T 2wfg_A 107 RIDAPYAV-----NKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQT---DIVPIVHTEK 178 (261)
T ss_dssp EEECTTCS-----SCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCC---CCCCCEEBTT
T ss_pred EEECCCCC-----CceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccC---CceeEEcCcc
Confidence 99999972 4689999999999999999999999999999999999 99 7 67788876
Q ss_pred CC---------------------------------ccccc--CCCCCCcchhhchHHHHHHHHhcCCeeeeeeecccccc
Q psy15223 770 DG---------------------------------NFIST--LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMH 814 (2492)
Q Consensus 770 ~G---------------------------------~~~~~--~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~ 814 (2492)
+| +|+.. .++|.|+++++|++.|++.|+++|.+.+..+++|+-.|
T Consensus 179 ~g~~~~~~~~~~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~~~h~~~~ 258 (261)
T 2wfg_A 179 YGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEHHH 258 (261)
T ss_dssp TBTCHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHHHHHHHHHHHTTSEEEECC-------
T ss_pred cCccchhhhhccccccccchhhhhhhhhhhhhhcccccceEeccccCCeEHHHHHHHHHHHHHHCCCeeeeeeeeecccc
Confidence 33 33333 68899999999999999999999999999999998755
No 60
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=99.97 E-value=3.1e-30 Score=280.02 Aligned_cols=140 Identities=23% Similarity=0.307 Sum_probs=127.6
Q ss_pred ecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHH
Q psy15223 1754 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 1833 (2492)
Q Consensus 1754 ~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 1833 (2492)
.++++||+|++ +. +.+++||||||||||||+||||||+++
T Consensus 3 ~~~~~~v~F~~-~~---------------~~~l~i~TTrP~Tl~g~~aiav~P~~~------------------------ 42 (147)
T 1wka_A 3 PGKLYTLRYEV-EG---------------GGFIEIATVRPETVFADQAIAVHPEDE------------------------ 42 (147)
T ss_dssp -CEEEEEEEEB-TT---------------SCEEEEEESCGGGGGGCCEEEECTTCT------------------------
T ss_pred cceEEEEEEEC-CC---------------CcEEEEEECCceecccceEEEECCCCc------------------------
Confidence 57899999998 32 358999999999999999999999953
Q ss_pred HHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCc
Q psy15223 1834 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 1913 (2492)
Q Consensus 1834 ~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~ 1913 (2492)
++ ++|.|++|.||++ ++++||+.++||++++|||+||+|||||++||++|++||| ++
T Consensus 43 --~~------------~~l~g~~~~~P~~------~~~ipI~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L---~~ 99 (147)
T 1wka_A 43 --RY------------RHLLGKRARIPLT------EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGL---KP 99 (147)
T ss_dssp --TT------------GGGTTCEEECTTS------SCEEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHTC---CC
T ss_pred --hH------------HHhcCCEEECCCC------CCeeEEEEeCccccCCCCCcEEEccCCCHHHHHHHHHcCC---Cc
Confidence 11 3789999999998 8999999999999999999999999999999999999999 99
Q ss_pred ccccCCCCccccCCCC----CCCccHHhhhHHHHHHHHhcCCcceeeee
Q psy15223 1914 INPVMDDGNFISTLPL----FGGMSIWKASKLICSYLKKSKTLFNIEMF 1958 (2492)
Q Consensus 1914 ~~~vd~~G~~~~~~~~----~~G~~v~~a~~~i~~~L~~~g~l~~~~~~ 1958 (2492)
++++|++|+| ++++ |.|+++++|++.|++.|+++|.+++.+.|
T Consensus 100 ~~~id~~G~~--~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 100 VSVINLEGRM--EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp CCSBCTTSBB--CSTTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ceEECCCCEE--cCCCcccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 9999999999 6776 99999999999999999999999988765
No 61
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=99.96 E-value=3.3e-31 Score=305.79 Aligned_cols=164 Identities=19% Similarity=0.196 Sum_probs=137.2
Q ss_pred ccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCce-----ehhhHHhHHHHHHHcCCcCceEEEEecccccccEE
Q psy15223 1783 KGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLL-----LILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINF 1857 (2492)
Q Consensus 1783 ~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~-----~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~ 1857 (2492)
..+++||||||||||||+||||||+++|+.+...+ ... +++++++++++.++.+.+...+.+++|. |.|++|
T Consensus 37 ~~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~G~-l~G~~~ 113 (219)
T 3o0a_A 37 RIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACI--GERLGNACYSDVENFVEKMKKMSTRERTMEEDKEGV-FLGVYA 113 (219)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHH--HHHTTCCCHHHHHHHHHHHHTCCHHHHHSCSSCCEE-EEEEEE
T ss_pred CCEEEEEECCcchhhcccEEEECCCCcEEEEEecC--CccccchhHHHHHHHHHHHHhhccccceeEEEeeeE-EcCCEE
Confidence 47899999999999999999999999999876542 112 2788888888765433222222568898 999999
Q ss_pred eCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCC-------CCccccC----
Q psy15223 1858 FHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD-------DGNFIST---- 1926 (2492)
Q Consensus 1858 ~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~-------~G~~~~~---- 1926 (2492)
.|||+ ++.+||+.+|||++++|||+||+|||||++||++|++||| +++++||+ +|.|+++
T Consensus 114 ~~Pl~------~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~L---pi~~vi~~~~~~~~~~g~ft~~g~~~ 184 (219)
T 3o0a_A 114 TNPAN------GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDL---PIKVVVKPEGAWDFEKGAYEGKGTLV 184 (219)
T ss_dssp ECTTT------CCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTC---CCCCCEECSSCCCTTTCCCCSCCEEC
T ss_pred ECCCC------CCeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCC---CceeeeCCccccccccccccccceEe
Confidence 99999 8999999999999999999999999999999999999999 78888876 4666554
Q ss_pred -CCCCCCccHHhhhHHHHHHHHhcCCcceeeee
Q psy15223 1927 -LPLFGGMSIWKASKLICSYLKKSKTLFNIEMF 1958 (2492)
Q Consensus 1927 -~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~ 1958 (2492)
++.|.||++++|++.|++.|+++|.+.+...|
T Consensus 185 ~~~~~~Gl~~~eA~~~Ii~~L~~~g~l~~~~~y 217 (219)
T 3o0a_A 185 NSDGFDGLDSETAKRKITEWLQDRGLGEKKVSY 217 (219)
T ss_dssp SCGGGTTCBHHHHHHHHHHHHHHTTSEEEC---
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHCCCeeeeeee
Confidence 47899999999999999999999999876654
No 62
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.96 E-value=1.6e-29 Score=294.56 Aligned_cols=169 Identities=21% Similarity=0.179 Sum_probs=139.3
Q ss_pred CCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCC------cCcEEEEEecccccC
Q psy15223 631 SGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF------KGNIIGICKGIKLSK 704 (2492)
Q Consensus 631 ~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~------~~~~~~~~~G~~l~g 704 (2492)
+++++++||||||||||||+||||||+++|++++..+ ++.||+|+++++++..+... ...++.+++|++|.|
T Consensus 77 g~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~--ge~~IvAe~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G 154 (311)
T 3pz6_A 77 NAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINK--DEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLL 154 (311)
T ss_dssp SCEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEET--TEEEEEEHHHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHTT
T ss_pred CCCEEEEEEECCchhhhhheEEEECCCCcEEEEEECC--CCEEEEeHHHHHHHHHhcccccccCCCcEEEEEEEhHHhcC
Confidence 4578999999999999999999999999999999843 37899999999997544321 234559999999999
Q ss_pred CEEecCCcccccCCCc-eecEEecCCcccCCCCccEEecCCCCHHHHHHHHH-----------cCC---------CCCCc
Q psy15223 705 INFFHPLSNIDINYNR-LSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKK-----------QNM---------KDSDI 763 (2492)
Q Consensus 705 ~~~~~P~~~~~~~~~~-~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~-----------~~l---------~~~~~ 763 (2492)
++|.|||. ++ .+||++++||++++|||+||+|||||++||.+|++ ||| ++.++
T Consensus 155 ~~~~hPl~------~~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk~k~~~~~Kygi~~e~v~~~~e~ipv 228 (311)
T 3pz6_A 155 ATVRAPLS------PYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPI 228 (311)
T ss_dssp CEEECTTC------SSSCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHTTGGGHHHHTTCCHHHHTTTSCCCCC
T ss_pred CEEECCCC------CCCeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHHHhhccHHHHHHcCCchHHhccCCCeEEE
Confidence 99999998 54 89999999999999999999999999999997766 775 33333
Q ss_pred cccc--------------------C----------------CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeee
Q psy15223 764 INPV--------------------M----------------DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEM 807 (2492)
Q Consensus 764 ~~~v--------------------d----------------~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~ 807 (2492)
|.+- | .+|.|. .+.|+|++|.+|++.|.+.|.+.|..+...+
T Consensus 229 I~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~--~g~~~G~~V~eAk~~i~~~L~~~g~a~~yyE 306 (311)
T 3pz6_A 229 IEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK--MGPFAGQSVKDCKQSCRDLLVQNNQCIVYSE 306 (311)
T ss_dssp EEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC--SSTTTTSBHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred EecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe--eeccCCeEHHHHHHHHHHHHHHCCCceEEcc
Confidence 3310 1 035554 4789999999999999999999999877655
Q ss_pred ec
Q psy15223 808 FE 809 (2492)
Q Consensus 808 ~~ 809 (2492)
.+
T Consensus 307 pe 308 (311)
T 3pz6_A 307 PE 308 (311)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 63
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.96 E-value=3.5e-30 Score=305.69 Aligned_cols=173 Identities=19% Similarity=0.177 Sum_probs=140.3
Q ss_pred CCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCC----cCceE-EEEeccccccc
Q psy15223 1781 SGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF----KGNII-GICKGIKLSKI 1855 (2492)
Q Consensus 1781 ~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~----~~~~v-~~~~G~~l~g~ 1855 (2492)
+.+.+++||||||||||||+||||||+++|++++..+ ..++++.++...+++..+. ....+ .+++|.+|.|+
T Consensus 30 ~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~L~G~ 106 (261)
T 2wfg_A 30 ENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGN---GDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGS 106 (261)
T ss_dssp TSEEEEEEEESCGGGGGGCCEEEECTTCEEEEEECST---TEEEEECHHHHHHHTTTTCSSSTTCCCCSEEEEHHHHTTC
T ss_pred CCCCEEEEEECCchHHhhhheEEECCCCceEEEEecC---ceEEEhHHHHHHHHHHHhhhhcccccEEEEEEecccccCC
Confidence 3568999999999999999999999999999999753 3456666676766654442 12233 89999999999
Q ss_pred EEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHH-------cC-------CCCCCcccccCC--
Q psy15223 1856 NFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKK-------QN-------MKDSDIINPVMD-- 1919 (2492)
Q Consensus 1856 ~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~-------~~-------l~~~~~~~~vd~-- 1919 (2492)
+|.||++. ++.+||++++||++++|||+||+|||||++||++|++ || | +++++||.
T Consensus 107 ~~~~Pl~~-----~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L---~i~~vId~~~ 178 (261)
T 2wfg_A 107 RIDAPYAV-----NKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQT---DIVPIVHTEK 178 (261)
T ss_dssp EEECTTCS-----SCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCC---CCCCCEEBTT
T ss_pred EEECCCCC-----CceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccC---CceeEEcCcc
Confidence 99999972 4689999999999999999999999999999999999 99 7 77777765
Q ss_pred CCc---------------------------------cccC--CCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccccc
Q psy15223 1920 DGN---------------------------------FIST--LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMH 1964 (2492)
Q Consensus 1920 ~G~---------------------------------~~~~--~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~ 1964 (2492)
+|. |+.. +++|.|+++++|++.|++.|+++|.+....+++|+-.|
T Consensus 179 ~g~~~~~~~~~~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~~~h~~~~ 258 (261)
T 2wfg_A 179 YGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEHHH 258 (261)
T ss_dssp TBTCHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHHHHHHHHHHHTTSEEEECC-------
T ss_pred cCccchhhhhccccccccchhhhhhhhhhhhhhcccccceEeccccCCeEHHHHHHHHHHHHHHCCCeeeeeeeeecccc
Confidence 333 2222 68899999999999999999999999999999998654
No 64
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=99.96 E-value=9.1e-31 Score=288.42 Aligned_cols=149 Identities=40% Similarity=0.705 Sum_probs=140.2
Q ss_pred cCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCC
Q psy15223 45 TDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLE 124 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~E 124 (2492)
+|..||..|+++|+++...+++|||||||+||+||++|+|....+.|++.|||++||++|++.++.+.+. |+|||||+|
T Consensus 6 ~d~~~m~~A~~~A~~a~~~~~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~-~~tlyvT~E 84 (159)
T 2b3j_A 6 NDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLE-GCTLYVTLE 84 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCT-TEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcc-eeEEEECCC
Confidence 5677999999999999888999999999999999999999998888999999999999999988877775 999999999
Q ss_pred ChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhccCc
Q psy15223 125 PCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRNF 194 (2492)
Q Consensus 125 PC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~~ 194 (2492)
||+||++||+|+||+||||++.+|+.++.|++++++...+++++++|++|++++||.+|++.||.++|..
T Consensus 85 PC~mC~~ai~~agi~rVv~~~~~~~~~~~g~~~~~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~~ 154 (159)
T 2b3j_A 85 PCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRAN 154 (159)
T ss_dssp CCHHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHhCCCeEEEEeeCCCcccccHHHHHHhccccCCCCEEEcCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999887644
No 65
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=99.96 E-value=2.3e-30 Score=296.07 Aligned_cols=168 Identities=15% Similarity=0.193 Sum_probs=136.6
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
-+++++|+|++.+ .+.+++||||||||||||+||||||+++|+.+...+ +++++.+
T Consensus 9 ~~~g~~v~F~~~~---------------~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~---------~~~~~~~ 64 (196)
T 2ajg_A 9 MGEGVEITFNVND---------------YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAEN---------NPELAAF 64 (196)
T ss_dssp --CEEEEEEEBTT---------------CSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTT---------CHHHHHH
T ss_pred cCceEEEEEEeCC---------------CCcEEEEEECChhhhcCccEEEECCCCcEEEEEcCC---------HHHHHHH
Confidence 3689999999853 246899999999999999999999999998764322 2334444
Q ss_pred HHHcC----CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCC
Q psy15223 684 LKKFG----FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMK 759 (2492)
Q Consensus 684 ~~~~~----~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~ 759 (2492)
.++.+ .+...+...+|.+|.|++|.|||+ ++.+||+.++||+++.|||+||+|||||++||++|++|||
T Consensus 65 ~~~~~~~~~~~~~~~~~~k~g~l~G~~~~~P~~------~~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~~L- 137 (196)
T 2ajg_A 65 IDECRNTKVAEAEMATMEKKGVDTGFKAVHPLT------GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGL- 137 (196)
T ss_dssp HHHHHHCCCCGGGGGGSCCCEEEEEEEEECTTT------CCEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHHTC-
T ss_pred HHHhhcccccceEEEeeeeCCEEcCCEEECCCC------CCeeEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHcCC-
Confidence 43322 122222233444899999999998 8899999999999999999999999999999999999999
Q ss_pred CCCcccccC---------CCCcccccC-----CCCCCcchhhchHHHHHHHHhcCCeee
Q psy15223 760 DSDIINPVM---------DDGNFISTL-----PLFGGMSIWKASKLICSYLKKSKTLFN 804 (2492)
Q Consensus 760 ~~~~~~~vd---------~~G~~~~~~-----~~~~G~~v~~a~~~i~~~L~~~g~l~~ 804 (2492)
+++++|| ++|+|+++. ++|.|+++++|++.|++.|+++|.+.+
T Consensus 138 --~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns~~~~Gl~v~eA~~~Ii~~L~~~g~~~~ 194 (196)
T 2ajg_A 138 --NIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGER 194 (196)
T ss_dssp --CCCCCBCCTTSSCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEEE
T ss_pred --CceeEEeCCcCcccccccccccCCceEecCcccCCeEHHHHHHHHHHHHHHCCCcee
Confidence 7778896 588888765 679999999999999999999998765
No 66
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=99.96 E-value=9.2e-31 Score=293.74 Aligned_cols=153 Identities=29% Similarity=0.491 Sum_probs=130.2
Q ss_pred cccCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccC------cccCCC
Q psy15223 43 IETDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNN------YRFSKN 116 (2492)
Q Consensus 43 ~etD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~------~~l~~~ 116 (2492)
..+|..||+.|+++|+++...+++|||||||+||+||++|+|++....|++.|||++||++|++.... +.+ .|
T Consensus 23 ~~~d~~~M~~Al~lA~~a~~~~~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~~~~~~~~~l-~g 101 (189)
T 3dh1_A 23 MEETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVF-EH 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCHHHHH-TT
T ss_pred hHHHHHHHHHHHHHHHHhhhCCCCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhhcCccccccc-CC
Confidence 34678899999999999988899999999999999999999998888899999999999999875322 124 49
Q ss_pred eEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhc--CCCceeEEeccccHHHHHHHHHHHHHhccCc
Q psy15223 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEK--KLNHHTILTGGVMQKQCEKLLKSFFIKRRNF 194 (2492)
Q Consensus 117 ~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~--~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~~ 194 (2492)
||||||+|||+||++||+|+||+|||||+.+|+.|+.|+.+.++... ..+|+++|++|++++||.+|++.||+++++.
T Consensus 102 ~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~~~l~~~gh~ieV~~Gvl~~e~~~Ll~~Ff~~~~~~ 181 (189)
T 3dh1_A 102 TVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGYRAEEAVEMLKTFYKQENPN 181 (189)
T ss_dssp EEEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTTCCCTTSSCCCEEECCTTHHHHHHHHHHHTCC----
T ss_pred eEEEEeCCChHHHHHHHHHhCCCEEEEEecCCCcccccccccchhhHHHHcCCCeEEEeCccHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999888877666432 3456799999999999999999999886554
Q ss_pred cc
Q psy15223 195 VK 196 (2492)
Q Consensus 195 ~~ 196 (2492)
.+
T Consensus 182 ~P 183 (189)
T 3dh1_A 182 AP 183 (189)
T ss_dssp --
T ss_pred CC
Confidence 44
No 67
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=99.96 E-value=6.9e-30 Score=282.47 Aligned_cols=148 Identities=36% Similarity=0.546 Sum_probs=139.1
Q ss_pred cCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCC
Q psy15223 45 TDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLE 124 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~E 124 (2492)
+|..||..|+++|+++...+++|||||||+||+||++|+|....+.||+.|||++||++|++.++.+.+. |+|||||+|
T Consensus 22 ~~~~~M~~A~~~A~~a~~~~~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~-~~tlYvT~E 100 (171)
T 1wwr_A 22 GKEYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLE-GCELYVTLE 100 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCT-TEEEEESSC
T ss_pred hHHHHHHHHHHHHHhcccCCCCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccC-ceEEEECCC
Confidence 3567999999999999888999999999999999999999999999999999999999999988777775 999999999
Q ss_pred ChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhccCc
Q psy15223 125 PCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRNF 194 (2492)
Q Consensus 125 PC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~~ 194 (2492)
||+||++||+|+||+||||++.+|+.++.|++++++...+++++++|++ ++++||.+|++.||+++|..
T Consensus 101 PC~mC~~ai~~agi~rVv~~~~d~~~g~~g~~~~~l~~~~~~~~i~V~~-vl~~e~~~ll~~f~~~~r~~ 169 (171)
T 1wwr_A 101 PCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEY-YPLEEASELLSEFFKKLRNN 169 (171)
T ss_dssp CBHHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTTCSSCCEEEE-CCCHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHCCCEEEEEecCCCccccchHHHHHhccccCCCcEEEE-ecHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999 99999999999999987744
No 68
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=99.96 E-value=2e-29 Score=288.36 Aligned_cols=168 Identities=15% Similarity=0.180 Sum_probs=133.7
Q ss_pred ecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHH
Q psy15223 1754 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 1833 (2492)
Q Consensus 1754 ~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 1833 (2492)
..++++|+|++.+ .+.+++||||||||||||+||||||+++|+++...+ +++++.+
T Consensus 9 ~~~g~~v~F~~~~---------------~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~---------~~~~~~~ 64 (196)
T 2ajg_A 9 MGEGVEITFNVND---------------YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAEN---------NPELAAF 64 (196)
T ss_dssp --CEEEEEEEBTT---------------CSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTT---------CHHHHHH
T ss_pred cCceEEEEEEeCC---------------CCcEEEEEECChhhhcCccEEEECCCCcEEEEEcCC---------HHHHHHH
Confidence 3689999999843 246899999999999999999999999998764221 1223333
Q ss_pred HHHcCCc---CceE-EEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCC
Q psy15223 1834 LKKFGFK---GNII-GICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMK 1909 (2492)
Q Consensus 1834 ~~~~~~~---~~~v-~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~ 1909 (2492)
.++.+.. ...+ ...+|..|.|++|.||++ ++.+||+.++||++++|||+||+|||||++||++|++|||
T Consensus 65 ~~~~~~~~~~~~~~~~~~k~g~l~G~~~~~P~~------~~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~~L- 137 (196)
T 2ajg_A 65 IDECRNTKVAEAEMATMEKKGVDTGFKAVHPLT------GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGL- 137 (196)
T ss_dssp HHHHHHCCCCGGGGGGSCCCEEEEEEEEECTTT------CCEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHHTC-
T ss_pred HHHhhcccccceEEEeeeeCCEEcCCEEECCCC------CCeeEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHcCC-
Confidence 3322110 1122 223344899999999998 8899999999999999999999999999999999999999
Q ss_pred CCCcccccC---------CCCccccCC-----CCCCCccHHhhhHHHHHHHHhcCCcce
Q psy15223 1910 DSDIINPVM---------DDGNFISTL-----PLFGGMSIWKASKLICSYLKKSKTLFN 1954 (2492)
Q Consensus 1910 ~~~~~~~vd---------~~G~~~~~~-----~~~~G~~v~~a~~~i~~~L~~~g~l~~ 1954 (2492)
+++++|| ++|.|+++. ++|.|+++++|++.|++.|+++|.+.+
T Consensus 138 --~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns~~~~Gl~v~eA~~~Ii~~L~~~g~~~~ 194 (196)
T 2ajg_A 138 --NIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGER 194 (196)
T ss_dssp --CCCCCBCCTTSSCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEEE
T ss_pred --CceeEEeCCcCcccccccccccCCceEecCcccCCeEHHHHHHHHHHHHHHCCCcee
Confidence 8888885 477777653 679999999999999999999998754
No 69
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.96 E-value=8.7e-29 Score=288.39 Aligned_cols=169 Identities=20% Similarity=0.156 Sum_probs=139.4
Q ss_pred CCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCC-----cCceE-EEEecccccc
Q psy15223 1781 SGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF-----KGNII-GICKGIKLSK 1854 (2492)
Q Consensus 1781 ~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~-----~~~~v-~~~~G~~l~g 1854 (2492)
+.+++++||||||||||||+||||||+.+|++++..+ ++.+|+|+++++++...... ..+.+ .+++|++|.|
T Consensus 77 g~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~--ge~~IvAe~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G 154 (311)
T 3pz6_A 77 NAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINK--DEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLL 154 (311)
T ss_dssp SCEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEET--TEEEEEEHHHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHTT
T ss_pred CCCEEEEEEECCchhhhhheEEEECCCCcEEEEEECC--CCEEEEeHHHHHHHHHhcccccccCCCcEEEEEEEhHHhcC
Confidence 3578999999999999999999999999999999853 37899999999987533211 23444 8999999999
Q ss_pred cEEeCCCCccccCCCc-eecEEecCccccCCCCceEEcCCCCChhhHHHHHH-----------cCC---------CCCCc
Q psy15223 1855 INFFHPLSNIDINYNR-LSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKK-----------QNM---------KDSDI 1913 (2492)
Q Consensus 1855 ~~~~~Pl~~~~~~~~~-~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~-----------~~l---------~~~~~ 1913 (2492)
++|.|||+ ++ .+||++++||++++|||+||+|||||++||.++++ ||+ ++.++
T Consensus 155 ~~~~hPl~------~~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk~k~~~~~Kygi~~e~v~~~~e~ipv 228 (311)
T 3pz6_A 155 ATVRAPLS------PYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPI 228 (311)
T ss_dssp CEEECTTC------SSSCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHTTGGGHHHHTTCCHHHHTTTSCCCCC
T ss_pred CEEECCCC------CCCeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHHHhhccHHHHHHcCCchHHhccCCCeEEE
Confidence 99999998 64 89999999999999999999999999999996655 775 33344
Q ss_pred cccc--------------------C----------------CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeee
Q psy15223 1914 INPV--------------------M----------------DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEM 1957 (2492)
Q Consensus 1914 ~~~v--------------------d----------------~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~ 1957 (2492)
+.+- | .+|.|. .+.|+|++|.+|++.|++.|.++|....+.+
T Consensus 229 I~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~--~g~~~G~~V~eAk~~i~~~L~~~g~a~~yyE 306 (311)
T 3pz6_A 229 IEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK--MGPFAGQSVKDCKQSCRDLLVQNNQCIVYSE 306 (311)
T ss_dssp EEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC--SSTTTTSBHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred EecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe--eeccCCeEHHHHHHHHHHHHHHCCCceEEcc
Confidence 4310 1 146766 5899999999999999999999999887766
Q ss_pred ec
Q psy15223 1958 FE 1959 (2492)
Q Consensus 1958 ~~ 1959 (2492)
.+
T Consensus 307 pe 308 (311)
T 3pz6_A 307 PE 308 (311)
T ss_dssp C-
T ss_pred cc
Confidence 54
No 70
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.96 E-value=9.7e-30 Score=276.48 Aligned_cols=142 Identities=35% Similarity=0.536 Sum_probs=122.5
Q ss_pred cCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCC
Q psy15223 45 TDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLE 124 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~E 124 (2492)
+|..||+.|+++|+++...+++|||||||+||+||++|+|....+.||+.|||++||++|++.++.+.+. |+|||||+|
T Consensus 3 ~d~~~m~~A~~~A~~a~~~~~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~-~~tly~T~e 81 (144)
T 2a8n_A 3 ERTHFMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLP-GADLYVTLE 81 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCT-TCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHhhcCCCCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccC-CeEEEECCC
Confidence 5677999999999999888899999999999999999999999889999999999999999988777775 999999999
Q ss_pred ChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHH
Q psy15223 125 PCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSF 187 (2492)
Q Consensus 125 PC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~ 187 (2492)
||+||++||+|+||+||||+..+|+.++.|++++++...+++++++|++|++++||.+||+.|
T Consensus 82 PC~mC~~ai~~~~i~rvv~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gvl~~e~~~l~~~f 144 (144)
T 2a8n_A 82 PCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLAESESAEILRQF 144 (144)
T ss_dssp CBHHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC-------------
T ss_pred ChHHHHHHHHHHCCCEEEEeecCCCccccchHHHHHhccccCCCcEEEeCCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999876
No 71
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=290.46 Aligned_cols=182 Identities=18% Similarity=0.180 Sum_probs=142.6
Q ss_pred EEEeccCchh-hHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1760 VGFSFSEPEK-IKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1760 v~f~~~~~~~-~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
|+|++.++.. ....++ +.+.+++||||||||||||+||||||+++|++++..+ ++.+|+++.+++.+..+-.
T Consensus 10 ikf~v~~~~~~~~~~~~-----~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~--~~~~i~a~~~~~~~~~~~~ 82 (252)
T 2wfd_A 10 LKLKVLEPYPSKLSGLK-----GKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVN--GDIFICTQKAARNMSYQGF 82 (252)
T ss_dssp EEEEEESSCCGGGGGGT-----TSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTT--SCEEEECHHHHHHHHTTTS
T ss_pred EEEEccCcchhhhhhcc-----CCCCEEEEEECChHHHhhhheEEECCCCcEEEEEecC--CcEEEEhhhhHHHHHHHHh
Confidence 6787654321 111221 3468999999999999999999999999999998742 2678999888776532210
Q ss_pred ---CcCc-eEEEEecccccccEEeCCCCccccCCC-ceecEEecCccccCCCCceEEcCCCCChhhHH----------HH
Q psy15223 1839 ---FKGN-IIGICKGIKLSKINFFHPLSNIDINYN-RLSPIYLGDYITVDSGTGIVHSAPAYGIEDFL----------IF 1903 (2492)
Q Consensus 1839 ---~~~~-~v~~~~G~~l~g~~~~~Pl~~~~~~~~-~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~----------~~ 1903 (2492)
.... .+.+++|.+|.|++|.||++ + +.+||++++||++++|||+||+|||||++||+ ++
T Consensus 83 ~~~~~~~~~~~~~~G~~l~G~~~~~Pl~------~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa 156 (252)
T 2wfd_A 83 TKDNGVVPVVKELMGEEILGASLSAPLT------SYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALR 156 (252)
T ss_dssp SSSTTCCCEEEECCHHHHTTCEEECSSC------SSSCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHH
T ss_pred hccCcccEEEEEEEcccccCCEEEcCCC------CCceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHH
Confidence 0223 34899999999999999998 6 57999999999999999999999999999999 58
Q ss_pred HHcCCCCC-----CcccccC----------------------C-----------------CCccccCCCCCCCccHHhhh
Q psy15223 1904 KKQNMKDS-----DIINPVM----------------------D-----------------DGNFISTLPLFGGMSIWKAS 1939 (2492)
Q Consensus 1904 ~~~~l~~~-----~~~~~vd----------------------~-----------------~G~~~~~~~~~~G~~v~~a~ 1939 (2492)
++|||+.+ +++.+++ + +|+|+ +++|.|+++++|+
T Consensus 157 ~kygL~~~~~~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~--~~~~~Gl~v~eA~ 234 (252)
T 2wfd_A 157 AKYGIRDDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML--VDGFKGQKVQDVK 234 (252)
T ss_dssp HTTTCCGGGTTTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC--STTSTTCBHHHHH
T ss_pred HHcCCCchhccccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCceEe--eeccCCeEHHHHH
Confidence 88999521 1222221 1 58887 7899999999999
Q ss_pred HHHHHHHHhcCCcceee
Q psy15223 1940 KLICSYLKKSKTLFNIE 1956 (2492)
Q Consensus 1940 ~~i~~~L~~~g~l~~~~ 1956 (2492)
+.|++.|+++|.+..+.
T Consensus 235 ~~Ii~~L~~~g~~~~~~ 251 (252)
T 2wfd_A 235 KTIQKKMIDAGDALIYM 251 (252)
T ss_dssp HHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCcccc
Confidence 99999999999886653
No 72
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.2e-28 Score=288.25 Aligned_cols=182 Identities=18% Similarity=0.172 Sum_probs=144.4
Q ss_pred EEEeecCCchh-hhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHc
Q psy15223 609 YVGFSFSEPEK-IKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF 687 (2492)
Q Consensus 609 yv~f~~~~~~~-~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~ 687 (2492)
-|+|++.+... ....+ .+.+.+++||||||||||||+||||||+++|+.++..+ ++.||+|+.+.+.+..+-
T Consensus 9 ~ikf~v~~~~~~~~~~~-----~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~--~~~~i~a~~~~~~~~~~~ 81 (252)
T 2wfd_A 9 LLKLKVLEPYPSKLSGL-----KGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVN--GDIFICTQKAARNMSYQG 81 (252)
T ss_dssp EEEEEEESSCCGGGGGG-----TTSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTT--SCEEEECHHHHHHHHTTT
T ss_pred EEEEEccCcchhhhhhc-----cCCCCEEEEEECChHHHhhhheEEECCCCcEEEEEecC--CcEEEEhhhhHHHHHHHH
Confidence 37888755321 11112 24568999999999999999999999999999998733 268999999888764331
Q ss_pred C----CcCcEEEEEecccccCCEEecCCcccccCCC-ceecEEecCCcccCCCCccEEecCCCCHHHHHH----------
Q psy15223 688 G----FKGNIIGICKGIKLSKINFFHPLSNIDINYN-RLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLI---------- 752 (2492)
Q Consensus 688 ~----~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~-~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~---------- 752 (2492)
. .+...+.+++|.+|.|++|.||++ + +.+||++++||+++.|||+||+|||||++||.+
T Consensus 82 ~~~~~~~~~~~~~~~G~~l~G~~~~~Pl~------~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~f 155 (252)
T 2wfd_A 82 FTKDNGVVPVVKELMGEEILGASLSAPLT------SYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQAL 155 (252)
T ss_dssp SSSSTTCCCEEEECCHHHHTTCEEECSSC------SSSCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHH
T ss_pred hhccCcccEEEEEEEcccccCCEEEcCCC------CCceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhH
Confidence 0 122345899999999999999998 5 579999999999999999999999999999995
Q ss_pred HHHcCCCCC-----CcccccC----------------------C-----------------CCcccccCCCCCCcchhhc
Q psy15223 753 FKKQNMKDS-----DIINPVM----------------------D-----------------DGNFISTLPLFGGMSIWKA 788 (2492)
Q Consensus 753 ~~~~~l~~~-----~~~~~vd----------------------~-----------------~G~~~~~~~~~~G~~v~~a 788 (2492)
|++|||+.+ +++.+|+ + +|+|+ .++|+|+++++|
T Consensus 156 a~kygL~~~~~~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~--~~~~~Gl~v~eA 233 (252)
T 2wfd_A 156 RAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML--VDGFKGQKVQDV 233 (252)
T ss_dssp HHTTTCCGGGTTTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC--STTSTTCBHHHH
T ss_pred HHHcCCCchhccccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCceEe--eeccCCeEHHHH
Confidence 788999621 1222221 1 58887 689999999999
Q ss_pred hHHHHHHHHhcCCeeee
Q psy15223 789 SKLICSYLKKSKTLFNI 805 (2492)
Q Consensus 789 ~~~i~~~L~~~g~l~~~ 805 (2492)
++.|++.|+++|.+...
T Consensus 234 ~~~Ii~~L~~~g~~~~~ 250 (252)
T 2wfd_A 234 KKTIQKKMIDAGDALIY 250 (252)
T ss_dssp HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCccc
Confidence 99999999999998764
No 73
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=99.95 E-value=1.1e-29 Score=278.81 Aligned_cols=145 Identities=29% Similarity=0.429 Sum_probs=131.1
Q ss_pred cCCCCCCCcccccccccccC-CcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcC
Q psy15223 45 TDSPYLSPIPHRAKLALIAG-EVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTL 123 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~~~-~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~ 123 (2492)
.|..||+.|+++|+++...+ ++|||||||+||+||++|+|....+.||+.|||++||++|++.++++++. |+|||||+
T Consensus 10 ~~~~~M~~Al~~A~~a~~~g~~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~-g~tlYvT~ 88 (164)
T 1wkq_A 10 NHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLD-DCILYTSC 88 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCT-TEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcC-ceEEEEeC
Confidence 45669999999999998888 99999999999999999999999889999999999999999998887876 99999999
Q ss_pred CChHhHHHHHHHhCCceEEEecCCCCCCccc----hhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhc
Q psy15223 124 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACG----SIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKR 191 (2492)
Q Consensus 124 EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g----~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~ 191 (2492)
|||+||++||+|+||+|||||..+++.++.| +.++++.....++.+.+ .|++++||.+||+.||++.
T Consensus 89 EPC~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~v-~gv~~~e~~~ll~~f~~~~ 159 (164)
T 1wkq_A 89 EPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPF-YQVTLTEHLSPFQAWRNFA 159 (164)
T ss_dssp CCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSCGGGSSSCE-EECCCTTTTHHHHHHHHCT
T ss_pred CChHHHHHHHHHHCCCEEEEEEcCCCccccCcchHHHHHHhcchhhcCCeEE-EecCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999988888 77777766555666655 7899999999999999764
No 74
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=99.94 E-value=3.1e-28 Score=276.82 Aligned_cols=146 Identities=22% Similarity=0.377 Sum_probs=127.8
Q ss_pred ccccCCCCCCCcccccccccccCCcceeeeeee-C-CEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccC----C
Q psy15223 42 LIETDSPYLSPIPHRAKLALIAGEVPVGAVLVK-N-NLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS----K 115 (2492)
Q Consensus 42 ~~etD~~~M~~a~~~a~~~~~~~~~pvGaviv~-~-~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~----~ 115 (2492)
...+|..||+.|+++|+++...++.|||||||+ | |+||++|+|++....|++.|||++||++|++.+++++|. +
T Consensus 24 ~~~~d~~~M~~Al~~A~~a~~~~~~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~L~~~~~~ 103 (197)
T 2g84_A 24 VLAAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGLP 103 (197)
T ss_dssp BCCSHHHHHHHHHHHHHHHHHTTCCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTCTTSC
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHcCCccccccCcC
Confidence 345678899999999999986668999999996 8 999999999999889999999999999999988877764 4
Q ss_pred CeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccc--------hhhhHHhhcCCCceeEEeccccHHHHHHHHHHH
Q psy15223 116 NYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACG--------SIINLFQEKKLNHHTILTGGVMQKQCEKLLKSF 187 (2492)
Q Consensus 116 ~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g--------~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~ 187 (2492)
|+|||||+|||+||++||+|+||+|||||+.+|+.++.| .+...+.+.+ ++|++|++++||.+|++.|
T Consensus 104 g~tlYvTlEPC~mCa~Aii~agI~rVv~g~~d~~~~~~G~~~~~~~~~~~~~l~~~~----i~V~~gvl~~e~~~ll~~f 179 (197)
T 2g84_A 104 ACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARG----ITVTTGLLRDAACALLREY 179 (197)
T ss_dssp CEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTT----CEEECCTTHHHHHHHHHHH
T ss_pred CEEEEEeCCCCHHHHHHHHHhCcCEEEEEecCCCccccCcccccchhHHHHHHhcCC----CEEEecCCHHHHHHHHHHH
Confidence 799999999999999999999999999999999887766 3444455554 4599999999999999999
Q ss_pred HHhc
Q psy15223 188 FIKR 191 (2492)
Q Consensus 188 ~~~~ 191 (2492)
|.+.
T Consensus 180 ~~~~ 183 (197)
T 2g84_A 180 NACN 183 (197)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 9863
No 75
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.93 E-value=6.1e-27 Score=257.87 Aligned_cols=141 Identities=27% Similarity=0.432 Sum_probs=122.5
Q ss_pred ccccCCCCCCCcccccccccccCCcceeeeee--eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEE
Q psy15223 42 LIETDSPYLSPIPHRAKLALIAGEVPVGAVLV--KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKI 119 (2492)
Q Consensus 42 ~~etD~~~M~~a~~~a~~~~~~~~~pvGaviv--~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~l 119 (2492)
...+|..||..|+++|+++...+++||||||| +||+||++|+|......||+.|||++||++|++.. ...+ +|+||
T Consensus 10 ~~~~d~~~M~~A~~~A~~a~~~~~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~~~-~~~~-~~~tl 87 (161)
T 1p6o_A 10 ASKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLE-GKVY-KDTTL 87 (161)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSCC-HHHH-TTEEE
T ss_pred CCHHHHHHHHHHHHHHHhhhccCCCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHHhC-Cccc-ccccc
Confidence 34567789999999999998888999999999 79999999999998888999999999999998741 2234 49999
Q ss_pred EEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhcc
Q psy15223 120 YVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRR 192 (2492)
Q Consensus 120 y~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~ 192 (2492)
|||+|||+||++||+|+||+|||||..+++.| ++..++.+.++. |.. ++++||.+|++.||+++|
T Consensus 88 YvT~EPC~mC~~ai~~agi~rVv~g~~~~~~g---~~~~~l~~~gi~----v~~-~~~~e~~~l~~~f~~~~r 152 (161)
T 1p6o_A 88 YTTLSPCDMCTGAIIMYGIPRCVVGENVNFKS---KGEKYLQTRGHE----VVV-VDDERCKKIMKQFIDERP 152 (161)
T ss_dssp EEEECCCHHHHHHHHHHTCCEEEEEESSSCCC---THHHHHHHTTCE----EEE-CCCHHHHHHHHHHHHHCH
T ss_pred ccCCCCCHHHHHHHHHhCCCEEEEEecCCCCc---cHHHHHHhcCCE----EEE-ecHHHHHHHHHHHHHhCh
Confidence 99999999999999999999999999988754 567888876654 665 899999999999998754
No 76
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.91 E-value=4.2e-23 Score=264.60 Aligned_cols=200 Identities=14% Similarity=0.160 Sum_probs=143.7
Q ss_pred eeeecccccchhhHHHHHHHHHHhcCCCCce-EEEEeeEE-EcCCC--ccccccCCCccCcchhhhhcChhhHHHHhhcc
Q psy15223 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYK-ALLTHGFV-VDSKG--KKMSKSKGNIIKPQKLCNLFGAEILRLWVAST 1048 (2492)
Q Consensus 973 Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k-~v~~hG~v-ld~~G--~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~ 1048 (2492)
-+|+.|.||+ +||+++. .+....|..|.+ .++.|||| ++.+| +|||||+||+|+|.|+++++|+|++|||+++.
T Consensus 238 ~Iyv~G~dq~-~~f~~l~-~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~ 315 (464)
T 3fnr_A 238 CINIWGADHH-GYIPRMK-AAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSK 315 (464)
T ss_dssp EEEEEEGGGG-GGHHHHH-HHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSS
T ss_pred EEEEecCcHH-HHHHHHH-HHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhc
Confidence 3789999999 7999854 444445555655 78999999 66666 49999999999999999999999999999999
Q ss_pred CcccccccCHHHHHHHH---------HHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH
Q psy15223 1049 DYSKDLSISNEILNRVV---------ETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY 1119 (2492)
Q Consensus 1049 ~~~~d~~fs~~~l~~~~---------~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~ 1119 (2492)
++.+|++|+++.+.+.. .++.|+++++|... ..++++.. .+...+...|++++.++.++.+.+.+++
T Consensus 316 ~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~--~~~~~~~~--~~~~~L~~~e~~Ll~~L~~~~~~v~~a~ 391 (464)
T 3fnr_A 316 KCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAG--KKIDDVMK--ADLQSLNQDGVNLLFEALNLKAVLNDAF 391 (464)
T ss_dssp CTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTT--CCTTTSTT--CCCTTCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh--ccCCCccc--cChhhCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875432 25788999988752 22222211 1223344459999999999999999999
Q ss_pred hccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCC-hHHHHHHHHHHHHHHHHHHHHhcccch
Q psy15223 1120 RMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKN-SHARRSAQTSIWHINQSLLRLISPILS 1184 (2492)
Q Consensus 1120 ~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~-~~~r~sa~~~L~~il~~l~~lLaPilP 1184 (2492)
++|+|+++++.|++++ ..+++||-+. +....+.+ ...|....... +|+..+.||.-=.|
T Consensus 392 ~~~ep~~i~~yL~~La-~~~n~fY~~~---~vl~~~~~~~~aRL~L~~a~--vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 392 EARALQKIPDYLKNLA-ANFHKFYNEN---KVVGSANENDLLKLFSLVAL--SIKTAFSLMGIEAK 451 (464)
T ss_dssp HHTCTTHHHHHHHHHH-HHHHHHHHHC---CCTTSTTHHHHHHHHHHHHH--HHHHHHHHTTCCCC
T ss_pred HcCCHHHHHHHHHHHH-HHHHHHHHhC---cCCCCCHHHHHHHHHHHHHH--HHHHHHHhcCCCch
Confidence 9999999999999999 5899988652 22221111 12233322222 67777777755444
No 77
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.91 E-value=5.8e-24 Score=283.99 Aligned_cols=169 Identities=15% Similarity=0.172 Sum_probs=118.7
Q ss_pred eEEEEeeEEEcCCCccccccCCCccCcchhhhh-------------------------cChhhHHHHhhccCcccccccC
Q psy15223 1003 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-------------------------FGAEILRLWVASTDYSKDLSIS 1057 (2492)
Q Consensus 1003 k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~-------------------------yGaD~lRl~l~s~~~~~d~~fs 1057 (2492)
-.++.||||. .+|+|||||+||+|+|+|++++ +|+|++||++++..+.+|++|+
T Consensus 380 ~~H~~~g~v~-~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd 458 (592)
T 1iq0_A 380 AHHLAYETVL-LEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFR 458 (592)
T ss_dssp EEEEEECCEE-ETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEEC
T ss_pred EEEEEeeEEE-cCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCCCCCCeec
Confidence 4578899998 6899999999999999999999 9999999999998889999999
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q psy15223 1058 NEILNRVV--------ETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVS 1129 (2492)
Q Consensus 1058 ~~~l~~~~--------~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~ 1129 (2492)
++.+.... .++.|+.+.++.... .. .+ + .....+.++.++..+.++.+.+.+++++++++.+++
T Consensus 459 ~d~~~~~~~~~~~ylqya~aR~~sil~k~~~--~~-~~--~---~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~ 530 (592)
T 1iq0_A 459 YQEALSFEGDTGPYVQYAHARAHSILRKAGE--WG-AP--D---LSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQ 530 (592)
T ss_dssp HHHHHCSSSSSHHHHHHHHHHHHHHHHHHCC--CC-CC--C---GGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhhcc--cC-CC--c---cCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99885432 234566666654311 11 01 1 111245577788899999999999999999999999
Q ss_pred HHHHHHhhhhhhhHHHhhhh-----hhccccCC-hHHHHHHHHHHHHHHHHHHHHhccc
Q psy15223 1130 KLQIYCSEDLGSFYLDILKD-----RLYTTKKN-SHARRSAQTSIWHINQSLLRLISPI 1182 (2492)
Q Consensus 1130 ~l~~f~~~~ls~~Yl~~~Kd-----rl~~~~~~-~~~r~sa~~~L~~il~~l~~lLaPi 1182 (2492)
.+++++ ..++.|| +..++ +....+.. ...|.........+|...+.+|.-=
T Consensus 531 yl~~La-~~fn~fy-~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi~ 587 (592)
T 1iq0_A 531 YLLDLA-ASWNAYY-NARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGIP 587 (592)
T ss_dssp HHHHHH-HHHHHHH-HCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHH-HHHHHHH-HhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999998 4565555 54543 33332211 2345555566677777777777643
No 78
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.90 E-value=1.1e-24 Score=274.31 Aligned_cols=180 Identities=23% Similarity=0.338 Sum_probs=147.8
Q ss_pred cCCCCCCCcccccccccc--cCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc
Q psy15223 45 TDSPYLSPIPHRAKLALI--AGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT 122 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~--~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t 122 (2492)
.|..||+.|+++|+++.. .+++|||||||+||+||++|+|... ++.|||++||++|++.+ +|||||||
T Consensus 13 ~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~----~~~HAE~~Ai~~a~~~~------~g~tlyvT 82 (373)
T 2b3z_A 13 MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKY----GEAHAEVHAIHMAGAHA------EGADIYVT 82 (373)
T ss_dssp CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCST----TSCCHHHHHHHHHGGGG------TTCEEEES
T ss_pred hHHHHHHHHHHHHHhhCcccCCCCcEEEEEEECCEEEEEEeCCCC----CCcCHHHHHHHHhhHhc------CCeEEEEe
Confidence 456799999999999864 6899999999999999999999874 48999999999997642 49999999
Q ss_pred CCCh------HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHh---ccC
Q psy15223 123 LEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK---RRN 193 (2492)
Q Consensus 123 ~EPC------~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~---~~~ 193 (2492)
+||| |||++||+++||+|||||+.||+.++.|++++++++.++. |..|++++||.+|++.||++ +||
T Consensus 83 lePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~~~~g~~~~~l~~~gi~----v~~g~l~~e~~~l~~~f~~~~~~~rP 158 (373)
T 2b3z_A 83 LEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIE----VREGILADQAERLNEKFLHFMRTGLP 158 (373)
T ss_dssp SCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHHTTTCE----EEECTTHHHHHHHTHHHHHHHHHSSC
T ss_pred CCCccCcCCChHHHHHHHHhCCCEEEEEecccchhhhhHHHHHHHhCCeE----EEeCCcccccccccceeeeeccccch
Confidence 9999 8999999999999999999999999999999999987765 88999999999999999965 789
Q ss_pred cccccccccccccccccccccCCcEEEeCcchhhH-HHHHhhcCCCEEEEE
Q psy15223 194 FVKNKSINIKMLRFYYPIPFIIGQYLYLPDNIVNH-LNVLRVKYKNTIILF 243 (2492)
Q Consensus 194 ~~~~~~a~m~M~r~f~~~~~~~~~~i~L~~~~~~H-l~VlR~~~gd~i~v~ 243 (2492)
+++.|.|. ++ .-|+... .|..-.+++++.+. .+-+|.. .|.|.+.
T Consensus 159 ~V~lk~A~-SL-DG~Ia~~--~G~~~Wit~~~~~~~~~~lr~~-~daILvG 204 (373)
T 2b3z_A 159 YVTLKAAA-SL-DGKIATS--TGDSKWITSEAARQDAQQYRKT-HQSILVG 204 (373)
T ss_dssp EEEEEEEE-ET-TSBSSCT--TSCCTTSSCHHHHHHHTTHHHH-SSEEEEE
T ss_pred hheeeeee-cC-CCceecc--CCCccccCCHHHHHHHHHHHHH-CCEEEEC
Confidence 99999988 32 3344322 23333456555554 3767765 5666654
No 79
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.90 E-value=1.1e-24 Score=276.15 Aligned_cols=182 Identities=24% Similarity=0.362 Sum_probs=150.6
Q ss_pred cccCCCCCCCccccccccc--ccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEE
Q psy15223 43 IETDSPYLSPIPHRAKLAL--IAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIY 120 (2492)
Q Consensus 43 ~etD~~~M~~a~~~a~~~~--~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly 120 (2492)
.+.|..||+.|+++|+++. .++++|||||||+||+||++|+|... ++.|||++||++|++.. +|||||
T Consensus 27 ~~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~----g~~HAE~~Ai~~a~~~~------~g~tly 96 (402)
T 2g6v_A 27 QGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRA----GEPHAEVHALRMAGEKA------KGATAY 96 (402)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEETTEEEEEEECCCT----TSCCHHHHHHHHHGGGG------GSSCEE
T ss_pred CHHHHHHHHHHHHHHHhhCccCCCCCCEEEEEEECCEEEEEEeCCCC----CccHHHHHHHHHhhHhc------CCeEEE
Confidence 4578889999999999986 46899999999999999999999874 48999999999997653 489999
Q ss_pred EcCCCh------HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHh---c
Q psy15223 121 VTLEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK---R 191 (2492)
Q Consensus 121 ~t~EPC------~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~---~ 191 (2492)
||+||| |||++||+|+||+|||||..+|+..+.|.++.+|++.|+. |..|++++||.+|++.|+++ +
T Consensus 97 vt~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~~~~g~g~~~l~~~gi~----v~~g~l~~e~~~l~~~f~~~~~~~ 172 (402)
T 2g6v_A 97 VTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID----VSHGLMMSEAEQLNKGFLKRMRTG 172 (402)
T ss_dssp ESSCCC-------CCHHHHHHTTCSCEEESSCCCSCSSSTTHHHHHHHTTCC----EEECTTTTHHHHHTHHHHHHHHSS
T ss_pred EeCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCccccchHHHHHHhCCcE----EEeCCcchhhHHHhhhhhhccccc
Confidence 999999 7999999999999999999999998889899999998887 88899999999999999976 7
Q ss_pred cCcccccccccccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEE
Q psy15223 192 RNFVKNKSINIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILF 243 (2492)
Q Consensus 192 ~~~~~~~~a~m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~ 243 (2492)
||+++.|.|. ++ .-|+..+ .|..-.+++++++.. +-+|.+. |.|.+.
T Consensus 173 rP~V~~k~A~-SL-DG~IA~~--~G~s~Wit~~~~r~~~~~lra~~-DAILvG 220 (402)
T 2g6v_A 173 FPYIQLKLGA-SL-DGRTAMA--SGESQWITSPQARRDVQLLRAQS-HAILTS 220 (402)
T ss_dssp SCEEEEEEEE-CT-TCBBCC-----CCSCSSCHHHHHHHHHHHHHC-SEEEEE
T ss_pred cchheeeeee-cC-CCCCccC--CCCcCCcCCHHHHHHHHHHHHhC-CEEEEC
Confidence 8999999988 32 3344332 333345677776665 8888774 455543
No 80
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.90 E-value=4.1e-24 Score=267.75 Aligned_cols=178 Identities=24% Similarity=0.379 Sum_probs=144.0
Q ss_pred CCCCCcccccccccc--cCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCC
Q psy15223 48 PYLSPIPHRAKLALI--AGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEP 125 (2492)
Q Consensus 48 ~~M~~a~~~a~~~~~--~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EP 125 (2492)
.||+.|+++|+++.. .+++|||||||+||+||++|+|... ++.|||++||++|++.. ..+ .|||||||+||
T Consensus 16 ~~m~~al~lA~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~----~~~HAE~~Ai~~a~~~~--~~~-~g~tlYvTlEP 88 (360)
T 2hxv_A 16 TFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYF----GGPHAERMAIESARKKG--EDL-RGATLIVTLEP 88 (360)
T ss_dssp HHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCST----TSCCHHHHHHHHHHHTT--CCC-TTCEEEEEECC
T ss_pred HHHHHHHHHHHHhccccCCCCCEEEEEEECCEEEEEEeCCCC----CCcCHHHHHHHHHHhcC--CCc-CCcEEEEecCc
Confidence 389999999999864 4799999999999999999999874 48999999999997532 244 49999999999
Q ss_pred h------HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHh---ccCccc
Q psy15223 126 C------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK---RRNFVK 196 (2492)
Q Consensus 126 C------~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~---~~~~~~ 196 (2492)
| |||++||+++||+|||||+.+|+. +.|++++++++.|+. |..|++++||.+|++.||++ +||+++
T Consensus 89 C~h~g~t~~C~~ai~~agi~rVv~~~~d~~~-~~g~g~~~l~~~gi~----v~~g~l~~e~~~l~~~f~~~~~~~rP~V~ 163 (360)
T 2hxv_A 89 CDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIE----VIEGVLEEEVKKLCEFFITYVTKKRPFVA 163 (360)
T ss_dssp CCSCSSSCCHHHHHHHHTCCEEEEEECCCCG-GGCCHHHHHHTTTCE----EEECTTHHHHHHHTHHHHHHHHHSSCEEE
T ss_pred ccccCCCHHHHHHHHHhCCCEEEEEecCchh-hhhhHHHHHHhCCcE----EEECCccccchhccceeeeccccchhhhe
Confidence 9 799999999999999999999998 888899999887765 88899999999999999965 789999
Q ss_pred ccccccccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEE
Q psy15223 197 NKSINIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILF 243 (2492)
Q Consensus 197 ~~~a~m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~ 243 (2492)
.|.|. ++ .-|+..+ .|..-.++ ++.+.. +-+|.+. |.|.+.
T Consensus 164 lk~A~-SL-DG~IA~~--~G~s~Wit-~~~~~~~~~lr~~~-DAILvG 205 (360)
T 2hxv_A 164 LKYAS-TL-DGKIADH--RGDSKWIT-DKLRFKVHEMRNIY-SAVLVG 205 (360)
T ss_dssp EEEEE-ET-TSEEECT--TSCCTTSC-STTHHHHHHHHHHS-SEEEEE
T ss_pred eehhh-cc-CCcccCC--CCCcccCC-HHHHHHHHHHHHHC-CEEEEC
Confidence 99988 32 3344332 23223345 555544 8888774 455543
No 81
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.89 E-value=5.7e-22 Score=254.18 Aligned_cols=165 Identities=16% Similarity=0.200 Sum_probs=127.6
Q ss_pred eeecccchhhhhHHHHHHHHHHhcCCcccc-EEEEeeeE-EcCCC--ceeeeccCCccCcchhhhccChhHHHHHHhccC
Q psy15223 2124 LYLEGSDQHRGWFHSSLLTSIILNKSAPYK-ALLTHGFV-VDSKG--KKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 2199 (2492)
Q Consensus 2124 l~~~G~D~~r~wf~~~l~~~~~l~~~~pfk-~v~~hG~v-ld~~G--~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~ 2199 (2492)
+|+.|.||+ +||.++. .++...|..|.+ .++.|||| ++.+| +|||||+||+|+|.++++++|+|++|||+++.+
T Consensus 239 Iyv~G~dq~-~~f~~l~-~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~~ 316 (464)
T 3fnr_A 239 INIWGADHH-GYIPRMK-AAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKK 316 (464)
T ss_dssp EEEEEGGGG-GGHHHHH-HHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSSC
T ss_pred EEEecCcHH-HHHHHHH-HHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhcC
Confidence 789999999 7998854 444444555555 68899999 65666 599999999999999999999999999999988
Q ss_pred CCCcccccHHHHHHH---------HHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh
Q psy15223 2200 YSKDLSISNEILNRV---------VETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR 2270 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~---------~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e 2270 (2492)
+.+|++|+++.+.+. ...+.|+.++++.... .++.+.. .....+...|++++.++.++.+.+.++++
T Consensus 317 ~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~--~~~~~~~--~~~~~L~~~e~~Ll~~L~~~~~~v~~a~~ 392 (464)
T 3fnr_A 317 CDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGK--KIDDVMK--ADLQSLNQDGVNLLFEALNLKAVLNDAFE 392 (464)
T ss_dssp TTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTC--CTTTSTT--CCCTTCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc--cCCCccc--cChhhCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887432 2357788888887521 2222211 11223444599999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhhhhhHHH
Q psy15223 2271 MYEFHMIVSKLQIYCSEDLGSFYLD 2295 (2492)
Q Consensus 2271 ~~~f~~a~~~l~~f~~~~ls~~Yle 2295 (2492)
+++|+.+++.+++++ ..+++||-+
T Consensus 393 ~~ep~~i~~yL~~La-~~~n~fY~~ 416 (464)
T 3fnr_A 393 ARALQKIPDYLKNLA-ANFHKFYNE 416 (464)
T ss_dssp HTCTTHHHHHHHHHH-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-HHHHHHHHh
Confidence 999999999999998 588888864
No 82
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.88 E-value=2.4e-21 Score=258.98 Aligned_cols=204 Identities=14% Similarity=0.100 Sum_probs=140.3
Q ss_pred eeecccccchhhHHHHHHHHHHhcCCCC---ceEEEEeeEEEcCCCccccccCC--CccCcchhhhh-------------
Q psy15223 974 LYLEGSDQHRGWFHSSLLTSIILNKSAP---YKALLTHGFVVDSKGKKMSKSKG--NIIKPQKLCNL------------- 1035 (2492)
Q Consensus 974 l~~~G~D~~rgwf~s~l~~~~~~~~~~p---~k~v~~hG~vld~~G~KMSKS~G--N~i~p~~ii~~------------- 1035 (2492)
+|+.|.||. ++|..+.....++ |..+ .-.++.||||. .+|.|||||+| |+|+++|++++
T Consensus 380 IyV~g~~q~-~~~~~l~~~l~~l-G~~~~~~~~~h~~~g~V~-~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~ 456 (629)
T 2zue_A 380 INVIGAEQK-HPQLAIKYALQLL-GFEDAAANLYHLAYEHVE-RPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKN 456 (629)
T ss_dssp EEEEEGGGH-HHHHHHHHHHHHT-TCHHHHHTEEEEEECCEE-BTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeCcHh-hHHHHHHHHHHHc-CCCCCCCeEEEEEeeeEE-cCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcC
Confidence 444455655 5566654444344 3322 24688999998 67899999999 99999999999
Q ss_pred --------------cChhhHHHHhhccCcccccccCHHHHHH--------HHHHHHHHHHHHHHHhhcCCCCCCC--ccc
Q psy15223 1036 --------------FGAEILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPN--INI 1091 (2492)
Q Consensus 1036 --------------yGaD~lRl~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~rf~l~~l~~~~~~--~~~ 1091 (2492)
+|+|++||++++.++.+|++||++.+.+ ...++.|+.+.++.........+.. ...
T Consensus 457 ~~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~ 536 (629)
T 2zue_A 457 PALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKN 536 (629)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred cccchhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 9999999999999999999999998742 2346678888887642211000000 000
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCC-hHHHHHHHHHHHH
Q psy15223 1092 IKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKN-SHARRSAQTSIWH 1170 (2492)
Q Consensus 1092 ~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~-~~~r~sa~~~L~~ 1170 (2492)
.......+.++.++..+.++.+.+.++++++++|.++..+++++ ..++.||=+. +....+.. ...|.....+...
T Consensus 537 ~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La-~~fn~fy~~~---~vl~~~~~~~~~RL~L~~a~~~ 612 (629)
T 2zue_A 537 ADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELA-SLFNKFYMDH---PVLKAEEGVREARLLLVMAVEQ 612 (629)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHH-HHHHHHHHHC---CSTTSCTTHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHHHHhc---cccCCChHHHHHHHHHHHHHHH
Confidence 00111245677788999999999999999999999999999998 6788877432 33322222 2346655566677
Q ss_pred HHHHHHHHhcccch
Q psy15223 1171 INQSLLRLISPILS 1184 (2492)
Q Consensus 1171 il~~l~~lLaPilP 1184 (2492)
+|...+.||.-=.|
T Consensus 613 vL~~gL~lLGI~ap 626 (629)
T 2zue_A 613 VLKNALYLMGIEAP 626 (629)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHHcCCCcc
Confidence 78888877754333
No 83
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.87 E-value=1.1e-21 Score=262.02 Aligned_cols=167 Identities=15% Similarity=0.171 Sum_probs=116.6
Q ss_pred EEEEeeeEEcCCCceeeeccCCccCcchhhhc-------------------------cChhHHHHHHhccCCCCcccccH
Q psy15223 2154 ALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-------------------------FGAEILRLWVASTDYSKDLSISN 2208 (2492)
Q Consensus 2154 ~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-------------------------yGaD~lR~~l~s~~~~~d~~fs~ 2208 (2492)
.++.||||+ .+|+|||||+||+|++.|++++ +|+|++||++++..+.+|++|++
T Consensus 381 ~H~~~g~v~-~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~ 459 (592)
T 1iq0_A 381 HHLAYETVL-LEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRY 459 (592)
T ss_dssp EEEEECCEE-ETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECH
T ss_pred EEEEeeEEE-cCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCCCCCCeecH
Confidence 467889997 5899999999999999999999 99999999999988899999999
Q ss_pred HHHHHH--------HHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Q psy15223 2209 EILNRV--------VETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSK 2280 (2492)
Q Consensus 2209 ~~l~~~--------~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~ 2280 (2492)
+.+... ...+.|+.+.++.... .. .+ + .....+.|+.++..+.++.+.+.+++++++++.+++.
T Consensus 460 d~~~~~~~~~~~ylqya~aR~~sil~k~~~--~~-~~--~---~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~y 531 (592)
T 1iq0_A 460 QEALSFEGDTGPYVQYAHARAHSILRKAGE--WG-AP--D---LSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQY 531 (592)
T ss_dssp HHHHCSSSSSHHHHHHHHHHHHHHHHHHCC--CC-CC--C---GGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhcc--cC-CC--c---cCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 988542 3344555555554311 01 01 1 1112456788889999999999999999999999999
Q ss_pred HHHHHHhhhhhhHHHhhhh-----hhccccCC-hHHHHHHHHHHHHHHHHHHHHHhc
Q psy15223 2281 LQIYCSEDLGSFYLDILKD-----RLYTTKKN-SHARRSAQTSIWHINQSLLRLISP 2331 (2492)
Q Consensus 2281 l~~f~~~~ls~~Yle~~K~-----~l~~~~~~-~~~r~~~~~~l~~il~~l~~lLaP 2331 (2492)
+++++ ..++. |++..++ +....... ...|.........+|...+.+|.-
T Consensus 532 l~~La-~~fn~-fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi 586 (592)
T 1iq0_A 532 LLDLA-ASWNA-YYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGI 586 (592)
T ss_dssp HHHHH-HHHHH-HHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HHHHH-HHHhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99998 45555 4454433 33332211 223554445666777777777753
No 84
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.85 E-value=3.5e-20 Score=247.73 Aligned_cols=201 Identities=14% Similarity=0.107 Sum_probs=138.4
Q ss_pred eeecccchhhhhHHHHHHHHHHhcCCcc---ccEEEEeeeEEcCCCceeeeccC--CccCcchhhhc-------------
Q psy15223 2124 LYLEGSDQHRGWFHSSLLTSIILNKSAP---YKALLTHGFVVDSKGKKMSKSKG--NIIKPQKLCNL------------- 2185 (2492)
Q Consensus 2124 l~~~G~D~~r~wf~~~l~~~~~l~~~~p---fk~v~~hG~vld~~G~KMSKS~G--Nvi~p~~ii~~------------- 2185 (2492)
+|+.|.||. +||..+.....++ |..+ .-.++.||||. .+|.|||||+| |+|+++|++++
T Consensus 380 IyV~g~~q~-~~~~~l~~~l~~l-G~~~~~~~~~h~~~g~V~-~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~ 456 (629)
T 2zue_A 380 INVIGAEQK-HPQLAIKYALQLL-GFEDAAANLYHLAYEHVE-RPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKN 456 (629)
T ss_dssp EEEEEGGGH-HHHHHHHHHHHHT-TCHHHHHTEEEEEECCEE-BTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeCcHh-hHHHHHHHHHHHc-CCCCCCCeEEEEEeeeEE-cCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcC
Confidence 444455555 4565554333333 3322 23578899998 67899999999 99999999999
Q ss_pred --------------cChhHHHHHHhccCCCCcccccHHHHHH--------HHHHHHHHHHHHHHHHhcCCCCCCC--ccc
Q psy15223 2186 --------------FGAEILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPN--INI 2241 (2492)
Q Consensus 2186 --------------yGaD~lR~~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~r~~~~~~~~~~~~--~~~ 2241 (2492)
+|+|++||++++.++.+|++||++.+.+ +.+.+.|+.+.++............ ...
T Consensus 457 ~~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~ 536 (629)
T 2zue_A 457 PALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKN 536 (629)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred cccchhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 9999999999998899999999998742 4556778888887643211000000 000
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCC-hHHHHHHHHHHHH
Q psy15223 2242 IKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKN-SHARRSAQTSIWH 2320 (2492)
Q Consensus 2242 ~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~-~~~r~~~~~~l~~ 2320 (2492)
.......+.++.++..+.++.+.+..++++++++.++..+++++ ..++.+|=+ . +....... ...|.....+...
T Consensus 537 ~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La-~~fn~fy~~-~--~vl~~~~~~~~~RL~L~~a~~~ 612 (629)
T 2zue_A 537 ADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELA-SLFNKFYMD-H--PVLKAEEGVREARLLLVMAVEQ 612 (629)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHH-HHHHHHHHH-C--CSTTSCTTHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHHHHh-c--cccCCChHHHHHHHHHHHHHHH
Confidence 00111245678899999999999999999999999999999998 578777743 2 33322222 2345555566677
Q ss_pred HHHHHHHHHhc
Q psy15223 2321 INQSLLRLISP 2331 (2492)
Q Consensus 2321 il~~l~~lLaP 2331 (2492)
+|...+.+|.-
T Consensus 613 vL~~gL~lLGI 623 (629)
T 2zue_A 613 VLKNALYLMGI 623 (629)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 78887777754
No 85
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.85 E-value=2.2e-22 Score=224.52 Aligned_cols=116 Identities=31% Similarity=0.396 Sum_probs=101.9
Q ss_pred ccCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCC---------------CCCCcHHHHHHHHHHHhc
Q psy15223 44 ETDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRN---------------DPTAHAEIIALRMASKLL 108 (2492)
Q Consensus 44 etD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~---------------~~~~HaE~~ai~~a~~~~ 108 (2492)
++|..||+.|+.+|+++. .+++|||||||+||+||++|+|....+. +++.|||++||++|++..
T Consensus 40 ~~de~~M~~A~~~A~~s~-~~~~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~g 118 (184)
T 2hvw_A 40 SWQDYFMANAELISKRST-CNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEG 118 (184)
T ss_dssp CHHHHHHHHHHHHGGGCC-CTTCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHcC
Confidence 467789999999999985 6899999999999999999999976542 789999999999998864
Q ss_pred cCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCC
Q psy15223 109 NNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLN 166 (2492)
Q Consensus 109 ~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~ 166 (2492)
..+ +|+|||||+|||+||+++|+++||+||||+..+++... +.++|++.|+.
T Consensus 119 --~~l-~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~~~~---~~~~L~~aGIe 170 (184)
T 2hvw_A 119 --ISA-NNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPF---AIELMTQKEVE 170 (184)
T ss_dssp --CCC-TTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSCCHH---HHHHHHHHTCE
T ss_pred --CCc-eeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCCCHH---HHHHHHHCCCE
Confidence 234 49999999999999999999999999999998876532 48899999987
No 86
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=99.84 E-value=3.2e-22 Score=228.55 Aligned_cols=126 Identities=26% Similarity=0.327 Sum_probs=104.5
Q ss_pred CCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCC-----------------------------------
Q psy15223 46 DSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRN----------------------------------- 90 (2492)
Q Consensus 46 D~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~----------------------------------- 90 (2492)
|..||..|..+|++|. .++.|||||||+||+||++|+|.++.+.
T Consensus 3 d~~fM~~A~~~A~rs~-~~~~~VGAVIV~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T 1vq2_A 3 ASTVLQIAYLVSQESK-CCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGST 81 (193)
T ss_dssp HHHHHHHHHHHHTTCC-CSSBCCEEEEEETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC-------------------
T ss_pred HHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEeCCCCCCCCCcchhhcccccccccccccccccccccccccccc
Confidence 5679999999999985 5799999999999999999999988642
Q ss_pred ------------------CCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCc
Q psy15223 91 ------------------DPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGA 152 (2492)
Q Consensus 91 ------------------~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~ 152 (2492)
+++.|||++||++|++.. ..+ .|+|||||+|||+||+++|+++||+||||+..+|+.+
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~HAE~~AI~~a~~~g--~~~-~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy~~~~~~~~- 157 (193)
T 1vq2_A 82 DRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENG--SSI-EGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNK- 157 (193)
T ss_dssp -CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHT--CCC-TTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCC-
T ss_pred cccccchhhccccccccCCCCCCHHHHHHHHHHhcC--CCc-CCeEEEEeCCCcHHHHHHHHHhCCCEEEEecCCCCcc-
Confidence 248899999999999874 234 4999999999999999999999999999997776654
Q ss_pred cchhhhHHhhcCCCceeEEeccccHHHHHH
Q psy15223 153 CGSIINLFQEKKLNHHTILTGGVMQKQCEK 182 (2492)
Q Consensus 153 ~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~ 182 (2492)
|...++|.+.|+. |.. +..++|.+
T Consensus 158 -~~~~~~l~~aGI~----v~~-~~~~~~~~ 181 (193)
T 1vq2_A 158 -PGWDDILRNAGIE----VFN-VPKKNLNK 181 (193)
T ss_dssp -TTTTHHHHHTTCE----EEE-CCGGGCCS
T ss_pred -hHHHHHHHHCCCE----EEE-eCHHHHHH
Confidence 4446899999987 443 55555543
No 87
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.82 E-value=2.1e-22 Score=224.62 Aligned_cols=133 Identities=23% Similarity=0.375 Sum_probs=103.2
Q ss_pred ccCCCCCCCcccccccccccCCcceeeeee-eCCEEEEEEEcCCccC------------CCC-------CCcHHHHHHHH
Q psy15223 44 ETDSPYLSPIPHRAKLALIAGEVPVGAVLV-KNNLVISYGYNQQITR------------NDP-------TAHAEIIALRM 103 (2492)
Q Consensus 44 etD~~~M~~a~~~a~~~~~~~~~pvGaviv-~~~~ii~~g~n~~~~~------------~~~-------~~HaE~~ai~~ 103 (2492)
..|..||..|+.+|+++. .+++||||||| +||+||++|+|....+ ++| +.|||++||++
T Consensus 11 ~~d~~~M~~A~~~A~~s~-~p~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~AI~~ 89 (178)
T 2w4l_A 11 EWPEYFMAVAFLSAQRSK-DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMN 89 (178)
T ss_dssp CHHHHHHHHHHHHHTTCC-CSSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHHHHHH
Confidence 457789999999999986 45899999999 7999999999988643 344 79999999999
Q ss_pred HHHhccCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCC-CCccchhhhHHhhcCCCceeEEeccccHHHHHH
Q psy15223 104 ASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFK-TGACGSIINLFQEKKLNHHTILTGGVMQKQCEK 182 (2492)
Q Consensus 104 a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~-~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~ 182 (2492)
|.. ..+ +|+|||||+|||+||+++|+++||+||||+..++. ......+..+|++.|+.. .. ++++|.+
T Consensus 90 a~g----~~~-~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~~~~d~~~~~~~~~~L~~aGI~V----~~--~~~~~~~ 158 (178)
T 2w4l_A 90 KNL----TDV-KGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMAGVTF----RK--FIPKCSK 158 (178)
T ss_dssp --------CC-TTCEEEEEECCCHHHHHHHHHTTCCEEEEEECTTTTSHHHHHHHHHHHHHTCEE----EE--CCCSCSE
T ss_pred hcC----CCc-cccEEEEeCCcHHHHHHHHHHHCCCEEEEEeccCCCCcchHHHHHHHHHCCCEE----EE--ccHHHHH
Confidence 752 234 49999999999999999999999999999987322 211123578999999873 32 5666666
Q ss_pred HHHHHH
Q psy15223 183 LLKSFF 188 (2492)
Q Consensus 183 l~~~~~ 188 (2492)
|+..|.
T Consensus 159 l~~~f~ 164 (178)
T 2w4l_A 159 IVIDFD 164 (178)
T ss_dssp EEEEGG
T ss_pred HHHHHH
Confidence 666653
No 88
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.79 E-value=1.5e-20 Score=248.52 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=98.6
Q ss_pred HhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCC--hHH--H-HH
Q psy15223 1582 KWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHG--MPI--E-IQ 1656 (2492)
Q Consensus 1582 ~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hG--lPi--e-~~ 1656 (2492)
.|......+.... ..+++.| +..+.|+|||.+||||+++.+..|+++||.+++|++|.|+.++|.|| -.| + ..
T Consensus 3 ~W~~~~a~~~~~~-~~~~~~y-v~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~ 80 (523)
T 1irx_A 3 HWADYIADKIIRE-RGEKEKY-VVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQ 80 (523)
T ss_dssp CHHHHHHHHHHHH-SCCCSEE-EEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCG
T ss_pred chHHHHHHHHHHh-cCCCCeE-EECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHH
Confidence 3555555444322 1223344 55567999999999999999999999999999999999999999999 322 1 11
Q ss_pred H-HHHhccCCCH----HHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHH-HHHHHHHHHHhCC-ceEE
Q psy15223 1657 I-EKLYGKNLSP----IEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEA-NELRAFGIIFKKG-YVYH 1728 (2492)
Q Consensus 1657 a-~k~~~~~~~~----~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~-~~~~~F~~L~~kG-liyr 1728 (2492)
+ ++.+|. ++ ..+ ..|++++.++.+.++++|+.||+. ||.. ++++. |.. .+++++.+|.++| .||+
T Consensus 81 a~~~~~G~--~~~~~p~p~-~~~~~~~~~~~~~~~~~l~~Lgi~--~D~~-~~se~-~~~g~~~~~i~~L~~~G~~iy~ 152 (523)
T 1irx_A 81 EWKDYLGM--PISEVPDPW-GCHESYAEHFMRKFEEEVEKLGIE--VDLL-YASEL-YKRGEYSEEIRLAFEKRDKIME 152 (523)
T ss_dssp GGGGGTTS--BGGGSCCTT-SSSSSHHHHHHHHHHHHHHTTTCC--CEEE-EHHHH-HHTTTTHHHHHHHHHTHHHHHH
T ss_pred HHHHHcCC--CcccCCcch-hhHHHHHHHHHHHHHHHHHHcCCC--ceEE-echhh-ccchHHHHHHHHHHHchHHHHH
Confidence 1 111232 22 011 136779999999999999999995 5543 55543 666 7899999999999 7774
No 89
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.77 E-value=8.6e-20 Score=241.32 Aligned_cols=121 Identities=13% Similarity=0.169 Sum_probs=92.6
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCC--chH--H-HHH-HHHhCcCCCH----HH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHG--MPI--E-IQI-EKLYGKNLSP----IE 519 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hG--lpi--E-~~a-~k~~~~~~~~----~e 519 (2492)
+.|++ .+.|+|||.+||||+++.+..|+++||.+++|++|.|+.++|.|| -.| + .++ ++.+|. ++ ..
T Consensus 20 ~~yv~-~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~--~~~~~p~p 96 (523)
T 1irx_A 20 EKYVV-ESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGM--PISEVPDP 96 (523)
T ss_dssp SEEEE-EEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTS--BGGGSCCT
T ss_pred CeEEE-CCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCC--CcccCCcc
Confidence 34555 456899999999999999999999999999999999999999999 333 1 111 111232 22 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHH-HHHHHHHHHHHcC-CeEE
Q psy15223 520 IQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEA-NELRAFGIIFKKG-YVYH 578 (2492)
Q Consensus 520 ~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~-~~~~~f~~l~~kG-liyr 578 (2492)
+ ..|+++++++.+.++++|+.|||. ||. |++++. |.. ..++++.+|.++| .||+
T Consensus 97 ~-~~~~~~~~~~~~~~~~~l~~Lgi~--~D~-~~~se~-~~~g~~~~~i~~L~~~G~~iy~ 152 (523)
T 1irx_A 97 W-GCHESYAEHFMRKFEEEVEKLGIE--VDL-LYASEL-YKRGEYSEEIRLAFEKRDKIME 152 (523)
T ss_dssp T-SSSSSHHHHHHHHHHHHHHTTTCC--CEE-EEHHHH-HHTTTTHHHHHHHHHTHHHHHH
T ss_pred h-hhHHHHHHHHHHHHHHHHHHcCCC--ceE-Eechhh-ccchHHHHHHHHHHHchHHHHH
Confidence 1 236779999999999999999994 554 455544 666 8899999999999 7775
No 90
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=99.77 E-value=4.3e-19 Score=193.61 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=80.9
Q ss_pred CcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHH
Q psy15223 52 PIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAG 131 (2492)
Q Consensus 52 ~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ 131 (2492)
++.+.++.+-..+|+|||||||++|+||+.|.+ ++.|||++||+ ...+ .|||||||+|||+||++
T Consensus 8 q~vd~~k~~~t~PNPpVGAVIVkDGeIIA~Ge~-------gTaHAEInAIr-------g~~L-~GaTLYVTLEPC~MCAg 72 (278)
T 3g8q_A 8 QTVDVKKILNEIPKRTVTAALLEGGEIVAVEEA-------DDEHAERKLVR-------RHDV-EGKVVFVTARPCLYCAR 72 (278)
T ss_dssp EEEEHHHHHHHSCCSSCEEEEEETTEEEEEEEC-------SSSCHHHHHHH-------HSCC-TTCEEEESSCCCHHHHH
T ss_pred cchhHhHHhccCCCCCEEEEEEECCEEEEecCC-------CCCCHHHHHhC-------CCCC-CCcEEEEeCCchHHHHH
Confidence 344555566668999999999999999999922 79999999997 1234 49999999999999999
Q ss_pred HHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCce
Q psy15223 132 AIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHH 168 (2492)
Q Consensus 132 ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~ 168 (2492)
||+|+||+|||||+.+. |.+..+|+++|+...
T Consensus 73 AII~AGIkRVVYGa~~~-----G~G~e~LreAGIEV~ 104 (278)
T 3g8q_A 73 ELAEAGVAGVVYLGRGR-----GLGPYYLARSGVEVV 104 (278)
T ss_dssp HHHTTTCCEEEEEECSS-----CCHHHHHHTTTCEEE
T ss_pred HHHHhCCCEEEEEecCC-----ChhHHHHHHCCCEEE
Confidence 99999999999999652 446789999999853
No 91
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.66 E-value=1.5e-14 Score=191.77 Aligned_cols=193 Identities=14% Similarity=0.066 Sum_probs=132.1
Q ss_pred eeeecccccchhhHHHHHHHHHHhcCCCCceEEEEe---eEEEcCCCccccccCCCccCcchhhhhcCh-----------
Q psy15223 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH---GFVVDSKGKKMSKSKGNIIKPQKLCNLFGA----------- 1038 (2492)
Q Consensus 973 Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~h---G~vld~~G~KMSKS~GN~i~p~~ii~~yGa----------- 1038 (2492)
-+|+.|.||. ++|..+.....++ |. |+...+.| |++. |||||+||+|+++|++++++.
T Consensus 367 ~IyV~g~~q~-~~f~q~~~~~~~l-G~-~~~~~~~Hv~fg~v~-----kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~ 438 (607)
T 1f7u_A 367 MIYVIASQQD-LHAAQFFEILKQM-GF-EWAKDLQHVNFGMVQ-----GMSTRKGTVVFLDNILEETKEKMHEVMKKNEN 438 (607)
T ss_dssp EEEECCGGGH-HHHHHHHHHHHHT-TC-GGGGGEEEECCCCEE-----SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHH
T ss_pred EEEEEcChHh-hHHHHHHHHHHHc-CC-CcCcEEEEecccccc-----cccCCCCCcccHHHHHHHHHHHHHHHHHhCcc
Confidence 3667788887 5676655444444 43 45444555 3443 799999999999999998844
Q ss_pred -----------------hhHHHHhhccCcccccccCHHHHHH--------HHHHHHHHHHHHHHHhhcCCCCCCCc-ccc
Q psy15223 1039 -----------------EILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNI-NII 1092 (2492)
Q Consensus 1039 -----------------D~lRl~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~rf~l~~l~~~~~~~-~~~ 1092 (2492)
.++||+.++.++.++++|+++.+.. ...++.|+.+++|...+ ..+.. ...
T Consensus 439 ~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~----~~~~~~~~~ 514 (607)
T 1f7u_A 439 KYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASG----ITQEKWINA 514 (607)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTT----SCHHHHTTS
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhcC----CCccccccc
Confidence 4799999999999999999998743 23467788888886421 11100 000
Q ss_pred ccccc-chHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccC-ChHHHHHHHHHHHH
Q psy15223 1093 KISDM-VEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK-NSHARRSAQTSIWH 1170 (2492)
Q Consensus 1093 ~~~~~-~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~-~~~~r~sa~~~L~~ 1170 (2492)
+...+ .+.++.++..|.++.+.+.++++++++|.++..+++++ ..|+.||=.. +....+. -...|.........
T Consensus 515 ~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La-~~fn~fY~~~---~Vl~~~~~~~~aRL~L~~a~~~ 590 (607)
T 1f7u_A 515 DFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLT-HQVSSCYDVL---WVAGQTEELATARLALYGAARQ 590 (607)
T ss_dssp CGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHC---CSTTSCHHHHHHHHHHHHHHHH
T ss_pred chhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHHHhC---CCCCCCHHHHHHHHHHHHHHHH
Confidence 11112 35567788899999999999999999999999999999 6899998431 2222211 11245555566667
Q ss_pred HHHHHHHHhcc
Q psy15223 1171 INQSLLRLISP 1181 (2492)
Q Consensus 1171 il~~l~~lLaP 1181 (2492)
+|+..+.||.-
T Consensus 591 vL~~gL~LLGI 601 (607)
T 1f7u_A 591 VLYNGMRLLGL 601 (607)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHhcCC
Confidence 77777777754
No 92
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=99.61 E-value=1.3e-15 Score=170.10 Aligned_cols=128 Identities=20% Similarity=0.263 Sum_probs=101.4
Q ss_pred Ccceeeeeee-----CCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHh---
Q psy15223 65 EVPVGAVLVK-----NNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHV--- 136 (2492)
Q Consensus 65 ~~pvGaviv~-----~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~--- 136 (2492)
+..+.|..|+ ++.||++|+|.. .+++.|||++||++|++.++ ..+..|+|+|||+|||+||+++|+++
T Consensus 32 ~~tyLcy~v~~~~~~~~~ii~~G~~~~---~~~~~HAE~~Ai~~a~~~l~-~~~~~g~TlYvTlePC~~Ca~aIi~al~~ 107 (190)
T 2nyt_A 32 NKTFLCYVVEAQGKGGQVQASRGYLED---EHAAAHAEEAFFNTILPAFD-PALRYNVTWYVSSSPCAACADRIIKTLSK 107 (190)
T ss_pred CceEEEEEEEecCCCCCCeEEEEECCC---CCCCcCHHHHHHHHHHHhcC-ccccCCeEEEEEcChHHHHHHHHHHhhhh
Confidence 5667888884 256999999976 36799999999999987553 34444899999999999999999999
Q ss_pred --CCceEEEecCCCCC--CccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHH-hcc---Ccccccccc
Q psy15223 137 --RLGEIIYGTPSFKT--GACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFI-KRR---NFVKNKSIN 201 (2492)
Q Consensus 137 --gi~rvv~g~~~~~~--~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~-~~~---~~~~~~~a~ 201 (2492)
||++||||+.++.. -....+...|.++|+.... +..+++...+..|.. .++ ||++.+...
T Consensus 108 ~~gI~rVV~~~~d~~~~~p~~~~g~~~L~~aGI~V~~-----~~~~e~~~~w~~fv~~~~~~~~pf~~W~~l~ 175 (190)
T 2nyt_A 108 TKNLRLLILVGRLFMWEEPEIQAALKKLKEAGCKLRI-----MKPQDFEYVWQNFVEQEEGESKAFQPWEDIQ 175 (190)
T ss_pred cCCccEEEEEeecCCcCChHHHHHHHHHHHCCCEEEE-----ecHHHHHHHHHHHHHccCCcCCccHhHHhch
Confidence 99999999887642 1123678899999998432 345678888888988 677 999888766
No 93
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.58 E-value=1.5e-13 Score=182.36 Aligned_cols=192 Identities=14% Similarity=0.059 Sum_probs=131.4
Q ss_pred eeecccchhhhhHHHHHHHHHHhcCCccccEEEEe---eeEEcCCCceeeeccCCccCcchhhhccCh------------
Q psy15223 2124 LYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH---GFVVDSKGKKMSKSKGNIIKPQKLCNLFGA------------ 2188 (2492)
Q Consensus 2124 l~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~h---G~vld~~G~KMSKS~GNvi~p~~ii~~yGa------------ 2188 (2492)
+|+.|.||. +||..+.....++ |. |+.+.+.| |++. |||||+||+|+++|++++++.
T Consensus 368 IyV~g~~q~-~~f~q~~~~~~~l-G~-~~~~~~~Hv~fg~v~-----kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~~ 439 (607)
T 1f7u_A 368 IYVIASQQD-LHAAQFFEILKQM-GF-EWAKDLQHVNFGMVQ-----GMSTRKGTVVFLDNILEETKEKMHEVMKKNENK 439 (607)
T ss_dssp EEECCGGGH-HHHHHHHHHHHHT-TC-GGGGGEEEECCCCEE-----SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHH
T ss_pred EEEEcChHh-hHHHHHHHHHHHc-CC-CcCcEEEEecccccc-----cccCCCCCcccHHHHHHHHHHHHHHHHHhCccc
Confidence 667777877 4566554433333 43 45444556 3443 799999999999999998744
Q ss_pred ----------------hHHHHHHhccCCCCcccccHHHHHH--------HHHHHHHHHHHHHHHHhcCCCCCCCc-cccc
Q psy15223 2189 ----------------EILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNI-NIIK 2243 (2492)
Q Consensus 2189 ----------------D~lR~~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~r~~~~~~~~~~~~~-~~~~ 2243 (2492)
.++||++++.++.++++|+++.+.. +..++.|+.+++|...+ ..+.. ....
T Consensus 440 ~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~----~~~~~~~~~~ 515 (607)
T 1f7u_A 440 YAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASG----ITQEKWINAD 515 (607)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTT----SCHHHHTTSC
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhcC----CCcccccccc
Confidence 4899999999999999999998753 45677788888876421 11100 0000
Q ss_pred ccc-cchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCC-hHHHHHHHHHHHHH
Q psy15223 2244 ISD-MVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKN-SHARRSAQTSIWHI 2321 (2492)
Q Consensus 2244 ~~~-~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~-~~~r~~~~~~l~~i 2321 (2492)
... ..+.++.++..|.++.+.+..++++++++.++..++++. ..|+.||=+ -+....... ...|.........+
T Consensus 516 ~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La-~~fn~fY~~---~~Vl~~~~~~~~aRL~L~~a~~~v 591 (607)
T 1f7u_A 516 FSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLT-HQVSSCYDV---LWVAGQTEELATARLALYGAARQV 591 (607)
T ss_dssp GGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHH---CCSTTSCHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHHHh---CCCCCCCHHHHHHHHHHHHHHHHH
Confidence 111 145678889999999999999999999999999999998 689998843 122222111 12344555556667
Q ss_pred HHHHHHHHhc
Q psy15223 2322 NQSLLRLISP 2331 (2492)
Q Consensus 2322 l~~l~~lLaP 2331 (2492)
|+..+.||.-
T Consensus 592 L~~gL~LLGI 601 (607)
T 1f7u_A 592 LYNGMRLLGL 601 (607)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHhcCC
Confidence 7777777743
No 94
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=99.40 E-value=9.4e-14 Score=153.93 Aligned_cols=83 Identities=37% Similarity=0.770 Sum_probs=74.7
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhcccc
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr~ 1408 (2492)
+..|..++ .|||+||++||+|+||+|||||+++++.|++|+.++++....+||++++++|++++||.+|++.||+++|.
T Consensus 76 l~~~tlYvTlEPC~mC~~ai~~agi~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~ 155 (168)
T 1z3a_A 76 LIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQ 155 (168)
T ss_dssp CTTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTCSSCCEEECCTTHHHHHHHHHHHHHHHHT
T ss_pred ccccEEEEcCCCcHHHHHHHHHHCcCEEEEEecCCCccccchhHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 45664444 69999999999999999999999999999999999999888899999999999999999999999999887
Q ss_pred ceeE
Q psy15223 1409 FVKN 1412 (2492)
Q Consensus 1409 ~~~~ 1412 (2492)
.++.
T Consensus 156 ~~~~ 159 (168)
T 1z3a_A 156 EIKA 159 (168)
T ss_dssp TCC-
T ss_pred cccc
Confidence 6543
No 95
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=99.40 E-value=7.3e-14 Score=156.06 Aligned_cols=82 Identities=28% Similarity=0.584 Sum_probs=73.9
Q ss_pred cchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhccc
Q psy15223 1329 LCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRR 1407 (2492)
Q Consensus 1329 LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr 1407 (2492)
.+..|..++ .|||+||++||+|+||+|||||+++++.|++|+.++++....+||+++|++|++++||.+|++.||+++|
T Consensus 82 ~l~g~tlYvTlEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~V~~gvl~~e~~~l~~~f~~~~r 161 (179)
T 2nx8_A 82 RLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGR 161 (179)
T ss_dssp CCTTEEEEEEECCBHHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGCTTTTCCCEEEECTTHHHHHHHHHHHHHHHH
T ss_pred cccceEEEECCCCcHHHHHHHHHhCCCeEEEEEeCCCCcccccHHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHH
Confidence 345664444 6999999999999999999999999999999999999988889999999999999999999999999887
Q ss_pred cce
Q psy15223 1408 NFV 1410 (2492)
Q Consensus 1408 ~~~ 1410 (2492)
..+
T Consensus 162 ~~~ 164 (179)
T 2nx8_A 162 ERK 164 (179)
T ss_dssp HHH
T ss_pred hcC
Confidence 553
No 96
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=99.39 E-value=9.6e-14 Score=156.02 Aligned_cols=80 Identities=23% Similarity=0.502 Sum_probs=68.8
Q ss_pred cchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecc--cCCCceEEEccccHHHHHHHHHHHHhc
Q psy15223 1329 LCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEK--KLNHHTILTGGVMQKQCEKLLKSFFIK 1405 (2492)
Q Consensus 1329 LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~--~~~~~~~~~~g~l~~e~~~l~~~f~~~ 1405 (2492)
.+..|..++ .|||+||++||+|+||+|||||++++++|++|+.++++... ..+|+++|++|++++||.+|++.||++
T Consensus 98 ~l~g~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~~~l~~~gh~ieV~~Gvl~~e~~~Ll~~Ff~~ 177 (189)
T 3dh1_A 98 VFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGYRAEEAVEMLKTFYKQ 177 (189)
T ss_dssp HHTTEEEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTTCCCTTSSCCCEEECCTTHHHHHHHHHHHTCC
T ss_pred ccCCeEEEEeCCChHHHHHHHHHhCCCEEEEEecCCCcccccccccchhhHHHHcCCCeEEEeCccHHHHHHHHHHHHHH
Confidence 467775555 69999999999999999999999999999999999987553 456789999999999999999999998
Q ss_pred ccc
Q psy15223 1406 RRN 1408 (2492)
Q Consensus 1406 rr~ 1408 (2492)
++.
T Consensus 178 ~~~ 180 (189)
T 3dh1_A 178 ENP 180 (189)
T ss_dssp ---
T ss_pred hcC
Confidence 764
No 97
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=99.38 E-value=1.3e-13 Score=151.85 Aligned_cols=82 Identities=38% Similarity=0.771 Sum_probs=73.2
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhcccc
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr~ 1408 (2492)
+..|..++ .|||+||++||+|+||+|||||+++++.|++|+.++++....+||++++++|++++||.+|++.||+++|.
T Consensus 74 l~~~tlyvT~EPC~mC~~ai~~agi~rVv~~~~~~~~~~~g~~~~~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~ 153 (159)
T 2b3j_A 74 LEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRA 153 (159)
T ss_dssp CTTEEEEEEECCCHHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEECCCCcHHHHHHHHHhCCCeEEEEeeCCCcccccHHHHHHhccccCCCCEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 45664444 69999999999999999999999999999999999999888899999999999999999999999999886
Q ss_pred cee
Q psy15223 1409 FVK 1411 (2492)
Q Consensus 1409 ~~~ 1411 (2492)
.++
T Consensus 154 ~~~ 156 (159)
T 2b3j_A 154 NKK 156 (159)
T ss_dssp C--
T ss_pred ccc
Confidence 553
No 98
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=99.30 E-value=8.8e-13 Score=146.01 Aligned_cols=79 Identities=30% Similarity=0.511 Sum_probs=71.7
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhcccc
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr~ 1408 (2492)
+..|..++ .|||+||++||+|+||+|||||+++++.|++|+.++++....+||+++|++ ++++||.+||+.||+++|.
T Consensus 90 l~~~tlYvT~EPC~mC~~ai~~agi~rVv~~~~d~~~g~~g~~~~~l~~~~~~~~i~V~~-vl~~e~~~ll~~f~~~~r~ 168 (171)
T 1wwr_A 90 LEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEY-YPLEEASELLSEFFKKLRN 168 (171)
T ss_dssp CTTEEEEESSCCBHHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTTCSSCCEEEE-CCCHHHHHHHHHHHHHHHH
T ss_pred cCceEEEECCCChHHHHHHHHHHCCCEEEEEecCCCccccchHHHHHhccccCCCcEEEE-ecHHHHHHHHHHHHHHHHH
Confidence 45664444 699999999999999999999999999999999999998888999999999 9999999999999999885
Q ss_pred c
Q psy15223 1409 F 1409 (2492)
Q Consensus 1409 ~ 1409 (2492)
+
T Consensus 169 ~ 169 (171)
T 1wwr_A 169 N 169 (171)
T ss_dssp T
T ss_pred h
Confidence 4
No 99
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.19 E-value=3.9e-12 Score=138.17 Aligned_cols=73 Identities=27% Similarity=0.510 Sum_probs=54.5
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHH
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSF 1402 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f 1402 (2492)
+..|..++ .|||+||++||+|+||+|||||+++++.|++|+.++++....+||+++|++|++++||.+||+.|
T Consensus 71 ~~~~tly~T~ePC~mC~~ai~~~~i~rvv~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gvl~~e~~~l~~~f 144 (144)
T 2a8n_A 71 LPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLAESESAEILRQF 144 (144)
T ss_dssp CTTCEEEEEECCBHHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC-------------
T ss_pred cCCeEEEECCCChHHHHHHHHHHCCCEEEEeecCCCccccchHHHHHhccccCCCcEEEeCCCHHHHHHHHhcC
Confidence 45664444 69999999999999999999999999999999999999888899999999999999999999987
No 100
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=99.12 E-value=7e-12 Score=142.64 Aligned_cols=78 Identities=22% Similarity=0.251 Sum_probs=63.9
Q ss_pred cchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecc----cCCCceEEEccccHHHHHHHHHHHH
Q psy15223 1329 LCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEK----KLNHHTILTGGVMQKQCEKLLKSFF 1403 (2492)
Q Consensus 1329 LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~----~~~~~~~~~~g~l~~e~~~l~~~f~ 1403 (2492)
+|..|..++ .|||+||++||+|+||+|||||+++++.|++|+.....+.. ..+|+++|++|++++||.+|++.||
T Consensus 101 ~~~g~tlYvTlEPC~mCa~Aii~agI~rVv~g~~d~~~~~~G~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~ll~~f~ 180 (197)
T 2g84_A 101 GLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLREYN 180 (197)
T ss_dssp TSCCEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTCEEECCTTHHHHHHHHHHHH
T ss_pred CcCCEEEEEeCCCCHHHHHHHHHhCcCEEEEEecCCCccccCcccccchhHHHHHHhcCCCEEEecCCHHHHHHHHHHHH
Confidence 477885555 69999999999999999999999999999888432221111 1258899999999999999999999
Q ss_pred hcc
Q psy15223 1404 IKR 1406 (2492)
Q Consensus 1404 ~~r 1406 (2492)
++.
T Consensus 181 ~~~ 183 (197)
T 2g84_A 181 ACN 183 (197)
T ss_dssp HHC
T ss_pred HcC
Confidence 864
No 101
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=99.08 E-value=4.7e-12 Score=139.25 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=64.9
Q ss_pred cchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCccc----ceEeeeecccCCCceEEEccccHHHHHHHHHHHH
Q psy15223 1329 LCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACG----SIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFF 1403 (2492)
Q Consensus 1329 LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g----~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~ 1403 (2492)
.+..|..++ .|||+||++||+|+||+|||||+++++.|++| +.++++.....+|++++ +|++++||.+||+.||
T Consensus 78 ~l~g~tlYvT~EPC~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~v-~gv~~~e~~~ll~~f~ 156 (164)
T 1wkq_A 78 QLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPF-YQVTLTEHLSPFQAWR 156 (164)
T ss_dssp SCTTEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSCGGGSSSCE-EECCCTTTTHHHHHHH
T ss_pred CcCceEEEEeCCChHHHHHHHHHHCCCEEEEEEcCCCccccCcchHHHHHHhcchhhcCCeEE-EecCHHHHHHHHHHHH
Confidence 356775554 69999999999999999999999999999999 66777655556677766 7799999999999999
Q ss_pred hcc
Q psy15223 1404 IKR 1406 (2492)
Q Consensus 1404 ~~r 1406 (2492)
++.
T Consensus 157 ~~~ 159 (164)
T 1wkq_A 157 NFA 159 (164)
T ss_dssp HCT
T ss_pred hcc
Confidence 764
No 102
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=99.01 E-value=1.3e-10 Score=123.97 Aligned_cols=89 Identities=21% Similarity=0.284 Sum_probs=76.7
Q ss_pred CCCCCCCccccccccccc-CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc-
Q psy15223 46 DSPYLSPIPHRAKLALIA-GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT- 122 (2492)
Q Consensus 46 D~~~M~~a~~~a~~~~~~-~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t- 122 (2492)
|..+|..|.+.++++..- ++.||||+|+ +||+|+ +|+|......+++.|||++||.+|... +...+. .+++|++
T Consensus 3 ~~~l~~~A~~aa~~ayapYs~~~VGAal~~~dG~i~-~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~-~~~l~~~~ 79 (136)
T 1uwz_A 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQ-MLAVAADT 79 (136)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEE-EEEEEESC
T ss_pred HHHHHHHHHHHHHhccCccCCCCEEEEEEeCCCeEE-EEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeE-EEEEEeCC
Confidence 345677788888888765 7899999999 589999 799999888899999999999999987 555664 7999995
Q ss_pred ---CCChHhHHHHHHHhC
Q psy15223 123 ---LEPCAMCAGAIIHVR 137 (2492)
Q Consensus 123 ---~EPC~mC~~ai~~~g 137 (2492)
++||.||..+|.+.+
T Consensus 80 ~~~~~PCg~Crq~l~e~~ 97 (136)
T 1uwz_A 80 PGPVSPCGACRQVISELC 97 (136)
T ss_dssp SSSCCCCHHHHHHHHHHS
T ss_pred CCccCHHHHHHHHHHHcC
Confidence 999999999999997
No 103
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=98.90 E-value=5e-10 Score=120.10 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=78.3
Q ss_pred cccccCCCCCCCccccccccccc-CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeE
Q psy15223 41 MLIETDSPYLSPIPHRAKLALIA-GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYK 118 (2492)
Q Consensus 41 ~~~etD~~~M~~a~~~a~~~~~~-~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ 118 (2492)
+..+++..+|..|.+.++.+... ++.||||+|+ +||+|+ +|.|......+++.|||++||.+|... +...+. .+.
T Consensus 10 ~~~~~~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~-~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~-~i~ 86 (146)
T 2fr5_A 10 VEPEHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISE-GYKDFR-AIA 86 (146)
T ss_dssp -CCHHHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEE-EEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEE-EEEeccccCCCCCcCHHHHHHHHHHhC-CCCceE-EEE
Confidence 33444566888888877777654 6889999999 799988 799998888889999999999999987 555664 788
Q ss_pred EEEc-----CCChHhHHHHHHHhC
Q psy15223 119 IYVT-----LEPCAMCAGAIIHVR 137 (2492)
Q Consensus 119 ly~t-----~EPC~mC~~ai~~~g 137 (2492)
+|++ ++||.||..+|.+.+
T Consensus 87 v~~~~~~~~~~PCG~Crq~l~E~~ 110 (146)
T 2fr5_A 87 ISSDLQEEFISPCGACRQVMREFG 110 (146)
T ss_dssp EEESCSSSCCCCCHHHHHHHHHTC
T ss_pred EEeCCCCcccCCCHHHHHHHHHhC
Confidence 9998 999999999999997
No 104
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=98.77 E-value=1.1e-09 Score=120.75 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=57.1
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhcccc
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr~ 1408 (2492)
+..|..++ .|||+||++||+|+||+|||||.+++..| +..+++ .+|++++.+ ++++||.+|++.||+++|.
T Consensus 82 ~~~~tlYvT~EPC~mC~~ai~~agi~rVv~g~~~~~~g---~~~~~l----~~~gi~v~~-~~~~e~~~l~~~f~~~~r~ 153 (161)
T 1p6o_A 82 YKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKS---KGEKYL----QTRGHEVVV-VDDERCKKIMKQFIDERPQ 153 (161)
T ss_dssp HTTEEEEEEECCCHHHHHHHHHHTCCEEEEEESSSCCC---THHHHH----HHTTCEEEE-CCCHHHHHHHHHHHHHCHH
T ss_pred ccccccccCCCCCHHHHHHHHHhCCCEEEEEecCCCCc---cHHHHH----HhcCCEEEE-ecHHHHHHHHHHHHHhChh
Confidence 45664454 69999999999999999999999887654 222222 237789988 9999999999999998876
Q ss_pred c
Q psy15223 1409 F 1409 (2492)
Q Consensus 1409 ~ 1409 (2492)
.
T Consensus 154 ~ 154 (161)
T 1p6o_A 154 D 154 (161)
T ss_dssp H
T ss_pred h
Confidence 4
No 105
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=98.72 E-value=5e-09 Score=110.80 Aligned_cols=95 Identities=16% Similarity=0.249 Sum_probs=76.4
Q ss_pred ccCCCCCCCcccccccccccCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEE-
Q psy15223 44 ETDSPYLSPIPHRAKLALIAGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV- 121 (2492)
Q Consensus 44 etD~~~M~~a~~~a~~~~~~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~- 121 (2492)
+.|..+|..|.+.++++...++.||||+|+ +||+|+ +|.|.. ..+++.|||+.||.+|... +...+. ..++|+
T Consensus 5 ~~~~~L~~~A~~a~~~ay~~s~f~VGAal~~~dG~i~-~G~NvE--~~~~t~cAE~~Ai~~A~~~-G~~~~~-~i~vv~~ 79 (130)
T 2z3g_A 5 QEESTLIERATATINSIPISEDYSVASAALSSDGRIF-TGVNVY--HFTGGPCAELVVLGTAAAA-AAGNLT-CIVAIGN 79 (130)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSSSCEEEEEEETTSCEE-EEECCC--CTTTCCCHHHHHHHHHHHT-TCCCEE-EEEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCEEEEEEecCCeEE-EEeccc--cCCcccCHHHHHHHHHHHc-CCCceE-EEEEEEC
Confidence 345567888888888877667899999999 789988 699987 4678999999999999987 444554 678888
Q ss_pred ----cCCChHhHHHHHHHhCCc-eEEE
Q psy15223 122 ----TLEPCAMCAGAIIHVRLG-EIIY 143 (2492)
Q Consensus 122 ----t~EPC~mC~~ai~~~gi~-rvv~ 143 (2492)
+++||.||..+|.+.+-. +|+.
T Consensus 80 ~~~~~~~PCG~Crq~l~e~~~~~~v~~ 106 (130)
T 2z3g_A 80 ENRGILSPCGRCRQVLLDLHPGIKAIV 106 (130)
T ss_dssp TTTEEECCCHHHHHHHHHHCTTCEEEE
T ss_pred CCCCccCcCHHHHHHHHHhCCCCEEEE
Confidence 689999999999998733 3443
No 106
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.55 E-value=2.5e-07 Score=119.01 Aligned_cols=94 Identities=22% Similarity=0.379 Sum_probs=70.1
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+++==||.|||.||||||.+.++...++| +|.+.|+.=+|.. ++.. -..+++
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDt----------------D~~R-------~~~e~~ 148 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDT----------------DPRR-------VDPEAY 148 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCC----------------CGGG-------CCTTHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcC----------------Cccc-------ccHHHH
Confidence 45666899999999999999999777777 3445555444433 2221 134678
Q ss_pred HHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 533 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.+.++++-||+ +|+..|+.++ |.........+|.++|+.|.
T Consensus 149 ~~I~edL~wLGl--~wd~~~~qSd--r~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 149 DMIPADLEWLGV--EWDETVIQSD--RMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp HHHHHHHHHHTC--CCSEEEEGGG--GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCC--CCCCCccccc--CHHHHHHHHHHHHHcCCcee
Confidence 899999999999 8887666654 55666778899999999997
No 107
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=98.46 E-value=6.8e-08 Score=121.69 Aligned_cols=88 Identities=18% Similarity=0.229 Sum_probs=71.1
Q ss_pred chhhhhhc-cCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHH
Q psy15223 1330 CNRCFNNL-FEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSF 1402 (2492)
Q Consensus 1330 C~RC~~~v-~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f 1402 (2492)
+..|..++ .||| +||++||+|+||+|||||+.++..+..|+.++.+. +++++|.+|++++||.+|++.|
T Consensus 74 ~~g~tlyvTlePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~~~~g~~~~~l~----~~gi~v~~g~l~~e~~~l~~~f 149 (373)
T 2b3z_A 74 AEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMK----EAGIEVREGILADQAERLNEKF 149 (373)
T ss_dssp GTTCEEEESSCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHH----TTTCEEEECTTHHHHHHHTHHH
T ss_pred cCCeEEEEeCCCccCcCCChHHHHHHHHhCCCEEEEEecccchhhhhHHHHHHH----hCCeEEEeCCccccccccccee
Confidence 56674444 6999 79999999999999999999998888887666543 4678999999999999999999
Q ss_pred Hhccc--cceeEEEEecCCCc
Q psy15223 1403 FIKRR--NFVKNKIQALPENR 1421 (2492)
Q Consensus 1403 ~~~rr--~~~~~l~~a~~k~~ 1421 (2492)
|+++| .+.+.+..|+.-..
T Consensus 150 ~~~~~~~rP~V~lk~A~SLDG 170 (373)
T 2b3z_A 150 LHFMRTGLPYVTLKAAASLDG 170 (373)
T ss_dssp HHHHHHSSCEEEEEEEEETTS
T ss_pred eeeccccchhheeeeeecCCC
Confidence 98754 45567777655443
No 108
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=98.34 E-value=1.4e-07 Score=118.22 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=66.3
Q ss_pred chhhhhhc-cCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHH
Q psy15223 1330 CNRCFNNL-FEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSF 1402 (2492)
Q Consensus 1330 C~RC~~~v-~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f 1402 (2492)
+..|..++ .||| +||++||+|+||+|||||+.++.. ..|+.++.+. +++++|.+|++++||.+|++.|
T Consensus 77 ~~g~tlYvTlEPC~h~g~t~~C~~ai~~agi~rVv~~~~d~~~-~~g~g~~~l~----~~gi~v~~g~l~~e~~~l~~~f 151 (360)
T 2hxv_A 77 LRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFR----NHGIEVIEGVLEEEVKKLCEFF 151 (360)
T ss_dssp CTTCEEEEEECCCCSCSSSCCHHHHHHHHTCCEEEEEECCCCG-GGCCHHHHHH----TTTCEEEECTTHHHHHHHTHHH
T ss_pred cCCcEEEEecCcccccCCCHHHHHHHHHhCCCEEEEEecCchh-hhhhHHHHHH----hCCcEEEECCccccchhcccee
Confidence 56675554 6999 799999999999999999998876 6665555433 4778999999999999999999
Q ss_pred Hhccc--cceeEEEEecC
Q psy15223 1403 FIKRR--NFVKNKIQALP 1418 (2492)
Q Consensus 1403 ~~~rr--~~~~~l~~a~~ 1418 (2492)
|+++| .+.+.+..++.
T Consensus 152 ~~~~~~~rP~V~lk~A~S 169 (360)
T 2hxv_A 152 ITYVTKKRPFVALKYAST 169 (360)
T ss_dssp HHHHHHSSCEEEEEEEEE
T ss_pred eeccccchhhheeehhhc
Confidence 97743 34566666544
No 109
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=98.26 E-value=3e-07 Score=116.71 Aligned_cols=88 Identities=16% Similarity=0.228 Sum_probs=67.7
Q ss_pred chhhhhhc-cCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHH
Q psy15223 1330 CNRCFNNL-FEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSF 1402 (2492)
Q Consensus 1330 C~RC~~~v-~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f 1402 (2492)
+..|..++ .||| +||++||+|+||+|||||+.++..+..|...+.+. ++.++|.+|++++||.+|++.|
T Consensus 90 ~~g~tlyvt~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~~~~g~g~~~l~----~~gi~v~~g~l~~e~~~l~~~f 165 (402)
T 2g6v_A 90 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQ----QAGIDVSHGLMMSEAEQLNKGF 165 (402)
T ss_dssp GGSSCEEESSCCC-------CCHHHHHHTTCSCEEESSCCCSCSSSTTHHHHHH----HTTCCEEECTTTTHHHHHTHHH
T ss_pred cCCeEEEEeCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCccccchHHHHHH----hCCcEEEeCCcchhhHHHhhhh
Confidence 56674444 6999 79999999999999999999887766665555433 4678999999999999999999
Q ss_pred Hhcc--ccceeEEEEecCCCc
Q psy15223 1403 FIKR--RNFVKNKIQALPENR 1421 (2492)
Q Consensus 1403 ~~~r--r~~~~~l~~a~~k~~ 1421 (2492)
|.++ ..+.+.+-.++.=..
T Consensus 166 ~~~~~~~rP~V~~k~A~SLDG 186 (402)
T 2g6v_A 166 LKRMRTGFPYIQLKLGASLDG 186 (402)
T ss_dssp HHHHHSSSCEEEEEEEECTTC
T ss_pred hhccccccchheeeeeecCCC
Confidence 9874 445566666654333
No 110
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.25 E-value=7.2e-06 Score=106.00 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=64.9
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 457 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 536 (2492)
Q Consensus 457 gPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~ 536 (2492)
=+|.|||.||||||++.+....++|- ..|.-++.+-=+|. .. ...++++.+.
T Consensus 6 FAPSPtG~lHiG~artal~n~l~Ar~--~~G~filRieDtD~-------------------~R-------~~~~~~~~i~ 57 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVFNWLYARH--RGGKFILRIEDTDR-------------------ER-------SRPEYTENIL 57 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCSS-------------------SS-------CCHHHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEEeeCCc-------------------cc-------cchHHHHHHH
Confidence 37899999999999999998777773 34555554444431 00 1245778999
Q ss_pred HHHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 537 MDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 537 ~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
++++.||+ +|+. +|+.++ +...-.....+|.++|++|.
T Consensus 58 ~dL~wLGl--~wde~~~~QS~--r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 58 EGLQWLGL--TWDEGPYFQSD--RLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHTTC--CCSEEEEEGGG--CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCC--CCCCCCccccC--CHHHHHHHHHHHHHCCCceE
Confidence 99999999 9986 666544 23344567788999999997
No 111
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=98.04 E-value=1e-06 Score=94.73 Aligned_cols=94 Identities=10% Similarity=0.055 Sum_probs=71.1
Q ss_pred CCCCCCCcccccccccccCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc--
Q psy15223 46 DSPYLSPIPHRAKLALIAGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT-- 122 (2492)
Q Consensus 46 D~~~M~~a~~~a~~~~~~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t-- 122 (2492)
|..+|..|.+.++++..-.. ||||+|+ +||+|+ +|.|......+++.|||.+||.+|..... ..+ +...++.+
T Consensus 4 ~~~L~~~A~~a~~~ayaPyS-~VGAAl~~~dG~i~-~G~NvEnas~~~~lcAEr~Ai~~a~~~G~-~~~-~~~~v~~~~~ 79 (142)
T 3b8f_A 4 EQQLYDVVKQLIEQRYPNDW-GGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAILEAHKFQK-KVT-HSICLARENE 79 (142)
T ss_dssp HHHHHHHHHHHHHHHCSSSC-EEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHHHHHHHTC-CEE-EEEEEEESST
T ss_pred HHHHHHHHHHHHHhcCCCCC-CEEEEEEeCCCcEE-EEECcccccCCcccCHHHHHHHHHHHCCC-CcE-EEEEEEecCC
Confidence 34466666666777766556 9999998 789988 89998888888999999999999988643 232 24566663
Q ss_pred ------CCChHhHHHHHHHhCCceEEE
Q psy15223 123 ------LEPCAMCAGAIIHVRLGEIIY 143 (2492)
Q Consensus 123 ------~EPC~mC~~ai~~~gi~rvv~ 143 (2492)
+-||.||...|.+.+-.-.|+
T Consensus 80 ~~~~~~~sPCG~CRq~l~e~~~~~~v~ 106 (142)
T 3b8f_A 80 HSELKVLSPCGVCQERLFYWGPEVQCA 106 (142)
T ss_dssp TSCCEECCCCHHHHHHHGGGCTTCEEE
T ss_pred CCCCCCCCcHHHHHHHHHHhCCCCEEE
Confidence 449999999999997444444
No 112
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=97.94 E-value=4.8e-06 Score=89.35 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=70.6
Q ss_pred CCCCCCCcccccccccc-cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc-
Q psy15223 46 DSPYLSPIPHRAKLALI-AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT- 122 (2492)
Q Consensus 46 D~~~M~~a~~~a~~~~~-~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t- 122 (2492)
+..++..|.+.++.+.. -.+.+|||+|+ +||+|+ +|.|-.....+++.|||.+||.+|........+. ...++..
T Consensus 11 ~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~-~i~vv~~~ 88 (142)
T 1r5t_A 11 LEALKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMIQVLMAGHRSGWK-CMVICGDS 88 (142)
T ss_dssp HHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCC-EEEEEESC
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCCEE-EEEeecccCCCCCcCHHHHHHHHHHHcCCCCceE-EEEEEeCC
Confidence 34566666666666654 25889999999 689887 6999887777889999999999999875442254 5777774
Q ss_pred ---C-CChHhHHHHHHHhC
Q psy15223 123 ---L-EPCAMCAGAIIHVR 137 (2492)
Q Consensus 123 ---~-EPC~mC~~ai~~~g 137 (2492)
. .||.||...|.+.+
T Consensus 89 ~~~~~~PCG~CRq~l~e~~ 107 (142)
T 1r5t_A 89 EDQCVSPCGVCRQFINEFV 107 (142)
T ss_dssp SSSCCCCCHHHHHHHHTTS
T ss_pred CCcccCHHHHHHHHHHHhC
Confidence 5 89999999999986
No 113
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=97.93 E-value=4.3e-06 Score=88.56 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=68.3
Q ss_pred CCCCCCcccccccccc-cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc--
Q psy15223 47 SPYLSPIPHRAKLALI-AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT-- 122 (2492)
Q Consensus 47 ~~~M~~a~~~a~~~~~-~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t-- 122 (2492)
...+..|.+.+.+++. -.+.+|||+|+ +||+|+ +|.|-......++.|||.+||.+|..... ..+ ..++++
T Consensus 11 ~~L~~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Av~~G~-~~i---~aiav~~~ 85 (138)
T 3r2n_A 11 DTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLI-TGVNVENASYGLALCAECSMISALYATGG-GRL---VAVYCVDG 85 (138)
T ss_dssp HHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTC-CCE---EEEEEECT
T ss_pred HHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCcEE-EEEcccccCCCCCcCHHHHHHHHHHHcCC-Cce---EEEEEEcC
Confidence 3355555555555543 34789999998 689987 99998877777899999999999988753 343 245665
Q ss_pred ----CCChHhHHHHHHHhCCceEEEe
Q psy15223 123 ----LEPCAMCAGAIIHVRLGEIIYG 144 (2492)
Q Consensus 123 ----~EPC~mC~~ai~~~gi~rvv~g 144 (2492)
..||.+|...|.+.+-..|+..
T Consensus 86 ~~~~~~PCG~CRQ~l~E~~~~~i~v~ 111 (138)
T 3r2n_A 86 NGDSLMPCGRCRQLLYEHGGPELKIM 111 (138)
T ss_dssp TSCBCCCCHHHHHHHHHHHCTTCEEE
T ss_pred CCCcCCCCHHHHHHHHHhCCCCEEEE
Confidence 7999999999999863335443
No 114
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=97.69 E-value=2e-05 Score=83.98 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=63.1
Q ss_pred CCCCccccccccccc-CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc----
Q psy15223 49 YLSPIPHRAKLALIA-GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT---- 122 (2492)
Q Consensus 49 ~M~~a~~~a~~~~~~-~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t---- 122 (2492)
++..|.+.+++|..- .+.+|||+++ +||+|+ +|.|-.......+.|||.+||.+|..... ..+. ...+++.
T Consensus 15 L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Avs~G~-~~~~-aiav~~~~~~~ 91 (141)
T 2d30_A 15 LIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGD-KEFV-AIAIVADTKRP 91 (141)
T ss_dssp HHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTC-CCEE-EEEEEESCSSC
T ss_pred HHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCEE-EeeccccCCCCcccCHHHHHHHHHHHCCC-CceE-EEEEEeCCCCc
Confidence 344444445555432 5789999999 689877 99998877677899999999999998743 3332 2334443
Q ss_pred CCChHhHHHHHHHhC
Q psy15223 123 LEPCAMCAGAIIHVR 137 (2492)
Q Consensus 123 ~EPC~mC~~ai~~~g 137 (2492)
..||.||...|...+
T Consensus 92 ~~PCG~CRQ~l~E~~ 106 (141)
T 2d30_A 92 VPPCGACRQVMVELC 106 (141)
T ss_dssp CCCCHHHHHHHHHHS
T ss_pred cCcCHHHHHHHHHhc
Confidence 689999999999986
No 115
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=97.49 E-value=5.8e-05 Score=91.68 Aligned_cols=54 Identities=22% Similarity=0.462 Sum_probs=50.3
Q ss_pred CHHHHHHHHHcCcEEEecccccc-cccHHHHHHhhhcccCccccccCCCCCCCcc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTF-KNSKILQKVMGSISLKNMLIETDSPYLSPIP 54 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~etD~~~M~~a~ 54 (2492)
+.++|++++++|+||||+|.+++ +++..+++++..+|++|+++|||.|||.+..
T Consensus 163 ~~e~a~~~l~~G~yis~~g~i~~~k~~~~l~~~v~~ip~drlLlETD~P~l~p~~ 217 (287)
T 3rcm_A 163 EREALFAYLDLDLHIGITGWICDERRGTHLHPLVGNIPEGRLMLESDAPYLLPRS 217 (287)
T ss_dssp CHHHHHHHHHTTCEEEECGGGGCTTTCGGGHHHHTTSCTTSEEECCCTTSCCCTT
T ss_pred CHHHHHHHHHCCcEEEECchhccccCHHHHHHHHHhcCCccEEEeccCCccCccc
Confidence 57899999999999999999999 7888999999999999999999999998754
No 116
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=97.45 E-value=2.5e-05 Score=86.48 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=29.0
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCc
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSF 1363 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~ 1363 (2492)
...|..++ .|||+||++||+|+||+|||||+.+.
T Consensus 55 L~GaTLYVTLEPC~MCAgAII~AGIkRVVYGa~~~ 89 (278)
T 3g8q_A 55 VEGKVVFVTARPCLYCARELAEAGVAGVVYLGRGR 89 (278)
T ss_dssp CTTCEEEESSCCCHHHHHHHHTTTCCEEEEEECSS
T ss_pred CCCcEEEEeCCchHHHHHHHHHhCCCEEEEEecCC
Confidence 45675554 69999999999999999999999864
No 117
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=97.34 E-value=0.00012 Score=89.96 Aligned_cols=52 Identities=27% Similarity=0.461 Sum_probs=45.0
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCcc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIP 54 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a~ 54 (2492)
|.|+|++++++||||||+|. ++++++ .++++..+|++|+++|||.|||.+..
T Consensus 204 s~e~a~~~l~lG~yis~~G~-~~k~~~-~~~~v~~iPldrlLlETDaP~l~~~~ 255 (325)
T 3ipw_A 204 TEEEMNQILNEGWDIGVTGN-SLQSIE-LLNVMKQIPIERLHIETDCPYCGIKK 255 (325)
T ss_dssp CHHHHHHHHHTTCEEEECSG-GGSSHH-HHHHHTTSCGGGEEECCCTTSCCCCT
T ss_pred CHHHHHHHHhcCcEEeeCcc-ccCcHH-HHHHHHhCCcccEEEeCCCccccccc
Confidence 57999999999999999996 666555 44899999999999999999997643
No 118
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=97.28 E-value=2.5e-05 Score=89.05 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=43.3
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHH
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l 1398 (2492)
+..|..++ .|||+||++||+++||+||||+.+.++.++.+ ..++.. ..++|.. +..+||.++
T Consensus 120 ~~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy~~~~~~~~~~~--~~~l~~----aGI~v~~-~~~~~~~~~ 182 (193)
T 1vq2_A 120 IEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKPGW--DDILRN----AGIEVFN-VPKKNLNKL 182 (193)
T ss_dssp CTTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCCTTT--THHHHH----TTCEEEE-CCGGGCCSS
T ss_pred cCCeEEEEeCCCcHHHHHHHHHhCCCEEEEecCCCCcchHH--HHHHHH----CCCEEEE-eCHHHHHHh
Confidence 34564444 69999999999999999999998888765332 333333 3357776 666666543
No 119
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=97.22 E-value=4.8e-06 Score=93.01 Aligned_cols=73 Identities=19% Similarity=0.369 Sum_probs=45.5
Q ss_pred cchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcC-CCc-ccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhc
Q psy15223 1329 LCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFK-TGA-CGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK 1405 (2492)
Q Consensus 1329 LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~-~g~-~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~ 1405 (2492)
.+..|..++ .|||.||++||+|+||+||||+..... ... .++ ..++.. ..++|.. +.+||.+++..|++.
T Consensus 94 ~~~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~~~~d~~~~~~~-~~~L~~----aGI~V~~--~~~~~~~l~~~f~~~ 166 (178)
T 2w4l_A 94 DVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAA-RLLFNM----AGVTFRK--FIPKCSKIVIDFDSI 166 (178)
T ss_dssp CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEECTTTTSHHHHHH-HHHHHH----HTCEEEE--CCCSCSEEEEEGGGC
T ss_pred CccccEEEEeCCcHHHHHHHHHHHCCCEEEEEeccCCCCcchHHH-HHHHHH----CCCEEEE--ccHHHHHHHHHHHhh
Confidence 345675554 699999999999999999999987221 111 111 222222 3456666 667777777777655
Q ss_pred ccc
Q psy15223 1406 RRN 1408 (2492)
Q Consensus 1406 rr~ 1408 (2492)
+..
T Consensus 167 ~~~ 169 (178)
T 2w4l_A 167 NSR 169 (178)
T ss_dssp ---
T ss_pred ccC
Confidence 443
No 120
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=97.22 E-value=0.0002 Score=86.88 Aligned_cols=92 Identities=13% Similarity=0.217 Sum_probs=65.3
Q ss_pred cCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHH
Q psy15223 456 DGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQ 535 (2492)
Q Consensus 456 dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~ 535 (2492)
==+|.|||.|||||+++.+.....+|- +.+.|+-=+|..- +.. -..++++.+
T Consensus 9 RFAPsPtG~LHiG~~rtal~n~l~Ar~-----~~g~~ilRieDtD----------------~~R-------~~~~~~~~I 60 (298)
T 1nzj_A 9 RFAPSPSGELHFGSLIAALGSYLQARA-----RQGRWLVRIEDID----------------PPR-------EVPGAAETI 60 (298)
T ss_dssp EECCCTTSCCCHHHHHHHHHHHHHHHH-----TTCEEEEEECCSC----------------GGG-------SCTTHHHHH
T ss_pred EECcCCCCCccHHHHHHHHHHHHHHHh-----cCCeEEEEEecCC----------------chh-------hHHHHHHHH
Confidence 347899999999999999977666663 3344443333321 111 114577899
Q ss_pred HHHHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 536 KMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 536 ~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
.++++.||+ +|+. +|+.++ +.........+|.++|++|.-
T Consensus 61 ~~dL~~LGl--~~D~~~~~qSe--r~~~y~~~~~~L~~~G~aY~c 101 (298)
T 1nzj_A 61 LRQLEHYGL--HWDGDVLWQSQ--RHDAYREALAWLHEQGLSYYC 101 (298)
T ss_dssp HHHHHHTTC--CCSSCCEEGGG--CHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCC--CCCCCCeeeeC--CHHHHHHHHHHHHHcCCcccC
Confidence 999999999 8886 555554 345667888999999999974
No 121
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=97.22 E-value=0.00019 Score=86.97 Aligned_cols=94 Identities=13% Similarity=0.228 Sum_probs=66.0
Q ss_pred EEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q psy15223 1604 LHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIE 1683 (2492)
Q Consensus 1604 i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~ 1683 (2492)
.+==+|.|||.|||||+++.+.....+| ++.+.|+.=+|..--+ . -..++++
T Consensus 7 ~~RFAPsPtG~LHiG~~rtal~n~l~Ar-----~~~g~~ilRieDtD~~----------------R-------~~~~~~~ 58 (298)
T 1nzj_A 7 IGRFAPSPSGELHFGSLIAALGSYLQAR-----ARQGRWLVRIEDIDPP----------------R-------EVPGAAE 58 (298)
T ss_dssp EEEECCCTTSCCCHHHHHHHHHHHHHHH-----HTTCEEEEEECCSCGG----------------G-------SCTTHHH
T ss_pred EEEECcCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEecCCch----------------h-------hHHHHHH
Confidence 3345899999999999999996666665 3344444444433211 0 1145678
Q ss_pred HHHHHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1684 QQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1684 ~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
.+.++|+.||+ +|+. +|+.++ +......+..+|.++|++|.-
T Consensus 59 ~I~~dL~~LGl--~~D~~~~~qSe--r~~~y~~~~~~L~~~G~aY~c 101 (298)
T 1nzj_A 59 TILRQLEHYGL--HWDGDVLWQSQ--RHDAYREALAWLHEQGLSYYC 101 (298)
T ss_dssp HHHHHHHHTTC--CCSSCCEEGGG--CHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCC--CCCCCCeeeeC--CHHHHHHHHHHHHHcCCcccC
Confidence 99999999999 8886 555554 445667788999999999964
No 122
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=97.20 E-value=0.00017 Score=85.86 Aligned_cols=48 Identities=27% Similarity=0.435 Sum_probs=45.3
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYL 50 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M 50 (2492)
|.++|++++++||||||+|.++ +++++++++..+|++|+++|||.||+
T Consensus 153 ~~e~a~~~l~~G~yis~~g~~~--~~~~~~~~v~~ip~drlLlETD~P~~ 200 (254)
T 3gg7_A 153 SVTELRRAISLGCWFSVGPTMV--RTQKGAALIRSMPRDRVLTETDGPFL 200 (254)
T ss_dssp CHHHHHHHHHTTCEEEECHHHH--TSHHHHHHHHHSCGGGEEECCCTTTS
T ss_pred CHHHHHHHHcCCcEEEECcccC--chHHHHHHHHHcCCCeEEEeCCCCcc
Confidence 5789999999999999999999 67789999999999999999999997
No 123
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.16 E-value=0.00027 Score=91.27 Aligned_cols=94 Identities=21% Similarity=0.347 Sum_probs=71.0
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==||.|||.||||||++.++...++| +|++.|+.=+|..- +.. -..+++
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD----------------~~R-------~~~e~~ 148 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTD----------------PRR-------VDPEAY 148 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCC----------------GGG-------CCTTHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCC----------------ccc-------ccHHHH
Confidence 45677899999999999999999777776 45555655555442 211 134577
Q ss_pred HHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.+.++++.||+ +|+..|+.+ +|.........+|.++|++|.
T Consensus 149 ~~I~edL~wLGl--~wd~~~~qS--dr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 149 DMIPADLEWLGV--EWDETVIQS--DRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp HHHHHHHHHHTC--CCSEEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCC--CCCCCcccc--cCHHHHHHHHHHHHHcCCcee
Confidence 899999999999 887766666 455666777889999999997
No 124
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=97.13 E-value=0.00048 Score=82.46 Aligned_cols=89 Identities=11% Similarity=0.042 Sum_probs=67.9
Q ss_pred CCCCCccccccccccc-CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccC-cccCCCeEEEEcCC
Q psy15223 48 PYLSPIPHRAKLALIA-GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNN-YRFSKNYKIYVTLE 124 (2492)
Q Consensus 48 ~~M~~a~~~a~~~~~~-~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~-~~l~~~~~ly~t~E 124 (2492)
..+..|.+.++++..- .+.||||+|+ +||+|+ +|.|-.+...+++.|||..||.++...... ..+. ...++.+.+
T Consensus 190 ~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~-~i~vv~~~~ 267 (294)
T 1ctt_A 190 ALSQAAIAAANRSHMPYSKSPSGVALECKDGRIF-SGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQ-RAVLAEKAD 267 (294)
T ss_dssp HHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEE-EEEEEECTT
T ss_pred HHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEE-EEEEEecCC
Confidence 3444455555555443 3789999999 678654 899999888899999999999999876432 2443 578888877
Q ss_pred ----ChHhHHHHHHHhCC
Q psy15223 125 ----PCAMCAGAIIHVRL 138 (2492)
Q Consensus 125 ----PC~mC~~ai~~~gi 138 (2492)
||.||...|...+-
T Consensus 268 ~~~sPCG~CRq~L~ef~~ 285 (294)
T 1ctt_A 268 APLIQWDATSATLKALGC 285 (294)
T ss_dssp CSSCCHHHHHHHHHHHTC
T ss_pred CCcCccHHHHHHHHHHCC
Confidence 99999999999764
No 125
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=97.13 E-value=0.00039 Score=89.74 Aligned_cols=94 Identities=28% Similarity=0.334 Sum_probs=65.8
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==+|.|||.||||||++.++...++| ...|. |+.=+|.. ++.. ...+++
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar--~~gG~---fiLRieDT----------------D~~R-------~~~e~~ 78 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ--DYKGQ---CNLRFDDT----------------NPVK-------EDIEYV 78 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH--HTTCE---EEEEECCC----------------CGGG-------CCHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCE---EEEEECCC----------------Cchh-------cCHHHH
Confidence 55667899999999999999999888887 23444 44444433 2211 245678
Q ss_pred HHHHHHHHHhcccccc-cCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1683 EQQKMDFMRLGILGEW-DNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw-~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.+.++|+.||+ +| +.+|+.++ |.......-.+|.++|++|.
T Consensus 79 ~~I~edL~wLGl--~wde~~~~qSe--r~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 79 ESIKNDVEWLGF--HWSGNVRYSSD--YFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp HHHHHHHHHTTC--CCSSSCEEGGG--GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCC--CCCCCCeehcc--cHHHHHHHHHHHHHCCCcee
Confidence 899999999999 77 45666654 22222333459999999997
No 126
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=97.01 E-value=0.00066 Score=87.65 Aligned_cols=94 Identities=27% Similarity=0.304 Sum_probs=66.4
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+.+==||.|||.||||||++.++...++|- ..|.-++-+-=+| +.. ...+++
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~--~gG~fiLRieDTD-------------------~~R-------~~~e~~ 78 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQD--YKGQCNLRFDDTN-------------------PVK-------EDIEYV 78 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCC-------------------GGG-------CCHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECCCC-------------------chh-------cCHHHH
Confidence 455668899999999999999998888873 3454444443333 221 345688
Q ss_pred HHHHHHHHHccccccc-cCeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 533 EQQKMDFMRLGILGEW-DNSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw-~~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.+.++++-||+ +| +.+|+.++- .........+|.++|+.|.
T Consensus 79 ~~I~edL~wLGl--~wde~~~~qSer--~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 79 ESIKNDVEWLGF--HWSGNVRYSSDY--FDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp HHHHHHHHHTTC--CCSSSCEEGGGG--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCC--CCCCCCeehccc--HHHHHHHHHHHHHCCCcee
Confidence 999999999999 88 456666552 2222344469999999997
No 127
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=97.01 E-value=0.00028 Score=75.30 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=64.6
Q ss_pred CCCCcccccccccc-cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEE----c
Q psy15223 49 YLSPIPHRAKLALI-AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV----T 122 (2492)
Q Consensus 49 ~M~~a~~~a~~~~~-~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~----t 122 (2492)
.+..|.+....++. -.+.+|||++. .||+|+ +|.|-.......+.|||..||.+|..... ..+. ...++. .
T Consensus 28 L~~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~-tG~NvEnasy~~t~CAEr~Ai~~Avs~G~-~~i~-aiavv~~~~~~ 104 (150)
T 3mpz_A 28 LRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVCALHSGGG-GRLV-ALSCVGPDGGV 104 (150)
T ss_dssp HHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTC-CCEE-EEEEECTTSCB
T ss_pred HHHHHHHHHHhccCCCCCCCEEEEEEeCCCCEE-EEEecccccCCccccHHHHHHHHHHHcCC-CceE-EEEEEcCCCCc
Confidence 44444444455543 35789999998 789988 99998877777799999999999988643 3442 122222 2
Q ss_pred CCChHhHHHHHHHhCCceEEE
Q psy15223 123 LEPCAMCAGAIIHVRLGEIIY 143 (2492)
Q Consensus 123 ~EPC~mC~~ai~~~gi~rvv~ 143 (2492)
..||-+|...|...+=..|++
T Consensus 105 ~~PCG~CRQ~L~Ef~~~~v~v 125 (150)
T 3mpz_A 105 LMPCGRCRQVLLEHGGPELLI 125 (150)
T ss_dssp CCCCHHHHHHHHHHHCTTCEE
T ss_pred cCCCHHHHHHHHHhCCCCEEE
Confidence 589999999999975333443
No 128
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=96.98 E-value=0.0016 Score=86.12 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=75.5
Q ss_pred Ccceeeccccchhheee---ecccccccc--ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccc
Q psy15223 419 GKRILRTETASLVALAI---LNGVWGEIK--ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYV 493 (2492)
Q Consensus 419 g~~ILr~eta~~~~~~~---v~~ly~~~~--~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~ 493 (2492)
-|+|+.-+-++....++ +..++..-. .+...++..+=.+ |.|||.|||||+++-++.+.++|. ..|.-++.+
T Consensus 92 VPkVie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRi 168 (592)
T 3al0_C 92 VPGIHRGSGSGSGSMFITGAFFDILEVGPKKIRRCFELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRI 168 (592)
T ss_dssp EECC------------------------CCCCCCCCCCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECB
T ss_pred EEEEcccCCCCCChHHHHHHHHHHHHcChhhcccCCCeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEe
Confidence 47888777666544443 223322211 0111234555445 999999999999999999999996 467666665
Q ss_pred cccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccC---------eeecCChHHHHHHH
Q psy15223 494 PGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDN---------SYKTMDFLNEANEL 564 (2492)
Q Consensus 494 ~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~ 564 (2492)
==+| +.. ...++.+.+.++++.||+ +||. +|+.++- .....
T Consensus 169 eDtD-------------------~~r-------~~~~~~~~I~~dL~wlGl--~~D~~~~~gG~~gp~~qSer--~~~y~ 218 (592)
T 3al0_C 169 EDTD-------------------TER-------SSREYEQQILESLRWCGL--DWDEGPDIGGDFGPYRQSER--LEIYR 218 (592)
T ss_dssp CCCC-------------------SSS-------CCHHHHHHHHHHHHHTTC--CCSBBTTTBCTTCCCBSTTC--HHHHH
T ss_pred cCcC-------------------hhh-------ccHHHHHHHHHHHHHcCC--CCCCCCCcCCCCCCeeeeCC--HHHHH
Confidence 3333 111 123467889999999999 8887 3565543 25667
Q ss_pred HHHHHHHHcCCeEEe
Q psy15223 565 RAFGIIFKKGYVYHG 579 (2492)
Q Consensus 565 ~~f~~l~~kGliyr~ 579 (2492)
....+|.++|++|.-
T Consensus 219 ~~~~~L~~~G~aY~c 233 (592)
T 3al0_C 219 EYAEKLVEDKRAYYV 233 (592)
T ss_dssp HHHHHHHHTTTEEEE
T ss_pred HHHHHHHHcCCceEe
Confidence 788999999999874
No 129
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=96.92 E-value=0.00022 Score=80.00 Aligned_cols=72 Identities=19% Similarity=0.215 Sum_probs=44.9
Q ss_pred Ccchhhhhhc-cCCccchhHHHHHh-----ccCeEEeCCCCcCCC--cccceEeeeecccCCCceEEEccccHHHHHHHH
Q psy15223 1328 DLCNRCFNNL-FEPCAMCAGAIIHV-----RLGEIIYGTPSFKTG--ACGSIINLFQEKKLNHHTILTGGVMQKQCEKLL 1399 (2492)
Q Consensus 1328 ~LC~RC~~~v-~~~c~mC~~a~~~~-----~i~~vv~g~~~~~~g--~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~ 1399 (2492)
.++.+|..++ .|||+||++||+++ ||++||||++++... ...-....+. .+.++|.. +..+|+...+
T Consensus 80 ~~~~g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~~~~~p~~~~g~~~L~----~aGI~V~~-~~~~e~~~~w 154 (190)
T 2nyt_A 80 ALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLK----EAGCKLRI-MKPQDFEYVW 154 (190)
T ss_pred cccCCeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecCCcCChHHHHHHHHHH----HCCCEEEE-ecHHHHHHHH
Confidence 3454664444 69999999999999 999999998865321 0000011111 24456653 3345777777
Q ss_pred HHHHh
Q psy15223 1400 KSFFI 1404 (2492)
Q Consensus 1400 ~~f~~ 1404 (2492)
.+|..
T Consensus 155 ~~fv~ 159 (190)
T 2nyt_A 155 QNFVE 159 (190)
T ss_pred HHHHH
Confidence 77766
No 130
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=96.89 E-value=0.00019 Score=80.37 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=29.4
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcC
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFK 1364 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~ 1364 (2492)
+..|..++ .|||+||++||+|+||+|||||...+.
T Consensus 121 l~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~ 156 (184)
T 2hvw_A 121 ANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRI 156 (184)
T ss_dssp CTTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSC
T ss_pred ceeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCC
Confidence 55664444 699999999999999999999998654
No 131
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.00057 Score=85.54 Aligned_cols=50 Identities=22% Similarity=0.407 Sum_probs=43.5
Q ss_pred CHHHHHHHHHcC--cEEEecccccccccHHHHHHhhhcccCccccccCCCCCCC
Q psy15223 1 SLDVAREIIELG--FYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSP 52 (2492)
Q Consensus 1 ~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~ 52 (2492)
|.|+|++++++| |||||+|. +++++ +.++++..+|++|+++|||.|||..
T Consensus 258 s~e~a~~~l~lG~~~yis~~g~-~~k~~-~~~e~v~~iPldrLLlETDaP~~~i 309 (401)
T 3e2v_A 258 SAIDLQKLLNLSPNIFIGVNGC-SLRTE-ENLAVVKQIPTERLLLETDAPWCEI 309 (401)
T ss_dssp CHHHHHHHHHHCTTEEEEECGG-GGSSH-HHHHHHHTSCGGGEEECCCTTSCCC
T ss_pred CHHHHHHHHhCCCCEEEEeCCE-ecCCH-HHHHHHHhCCchhEEEecCCCCccc
Confidence 579999999999 99999996 66554 4559999999999999999999753
No 132
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=96.76 E-value=0.0014 Score=86.69 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=70.7
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy15223 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYE 1680 (2492)
Q Consensus 1601 ~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~ 1680 (2492)
+..+=.+ |.|||.||+||+++-+..+.++|. ..|.-++.+==+| +.. ...+
T Consensus 129 ~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRieDtD-------------------~~r-------~~~~ 179 (592)
T 3al0_C 129 LVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTD-------------------TER-------SSRE 179 (592)
T ss_dssp CCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCC-------------------SSS-------CCHH
T ss_pred eEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEecCcC-------------------hhh-------ccHH
Confidence 4444444 999999999999999999999986 4676666653333 110 1334
Q ss_pred HHHHHHHHHHHhcccccccC---------eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1681 KIEQQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1681 ~i~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.+.++|+.+|+ +||. +|+.++- .........+|.++|++|.-
T Consensus 180 ~~~~I~~dL~wlGl--~~D~~~~~gG~~gp~~qSer--~~~y~~~~~~L~~~G~aY~c 233 (592)
T 3al0_C 180 YEQQILESLRWCGL--DWDEGPDIGGDFGPYRQSER--LEIYREYAEKLVEDKRAYYV 233 (592)
T ss_dssp HHHHHHHHHHHTTC--CCSBBTTTBCTTCCCBSTTC--HHHHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHHHcCC--CCCCCCCcCCCCCCeeeeCC--HHHHHHHHHHHHHcCCceEe
Confidence 66789999999999 8887 3666543 25567788899999999875
No 133
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=96.73 E-value=0.0013 Score=88.61 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=68.8
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==+|.|||.||||||++.++...++|- |.+.|+.=+|.. ++.. ...+++
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~-----~gG~fiLRIEDT----------------D~~R-------~~~e~~ 118 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTARQ-----YGGQFNLRMDDT----------------NPEL-------ARQEYV 118 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHH-----TTCEEEEEECCC----------------CTTT-------CCHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEECcC----------------Cccc-------ccHHHH
Confidence 455668999999999999999998877773 444455444443 1211 145678
Q ss_pred HHHHHHHHHhcccccc-cCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1683 EQQKMDFMRLGILGEW-DNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw-~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.+.++|+.||+ +| +.+|+.+ +|.........+|.++|++|.
T Consensus 119 ~~IledL~wLGl--~wde~~~~qS--er~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 119 DSIADDLKWLGL--DWGEHFYYAS--DYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp HHHHHHHHHHTC--CCTTCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCC--CCCCCcccHh--hhHHHHHHHHHHHHHCCCcEe
Confidence 899999999999 78 4566665 445556667789999999997
No 134
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=96.73 E-value=0.00095 Score=86.36 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=70.3
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy15223 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYE 1680 (2492)
Q Consensus 1601 ~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~ 1680 (2492)
.++++-=+|.|||.||+||+++-++.|.++|. ..|+-|+.+=-+|. .. ...+
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD~---------------~r-----------~~~~ 63 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTDL---------------ER-----------SERE 63 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSSC---------------CS-----------GGGH
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCCc---------------cc-----------cHHH
Confidence 46677789999999999999999999999998 68887777543331 01 1233
Q ss_pred HHHHHHHHHHHhcccccccC---------eeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1681 KIEQQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1681 ~i~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.+.+.++++.+|+ +|+. +|+.++ +......+..+|.++|.+|.
T Consensus 64 ~~~~I~~~l~wlGl--~~de~p~~gg~~g~y~QS~--r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 64 YEEKLMESLRWLGL--LWDEGPDVGGDHGPYRQSE--RVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp HHHHHHHHHHHHTC--CCSBBTTTBCTTCCCBGGG--GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCC--CCCCCcccCCCCCceeeec--cHHHHHHHHHHHHHCCCeeE
Confidence 55667888999999 7875 355443 34445567888999999874
No 135
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=96.67 E-value=0.0016 Score=83.57 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=69.8
Q ss_pred EEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q psy15223 1604 LHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIE 1683 (2492)
Q Consensus 1604 i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~ 1683 (2492)
.+==+|.|||.||+||+++.+..+.++|. ..|.-++.+=-.|. .. ...++++
T Consensus 27 ~~RFAPSPTG~lHiG~~rtal~n~l~Ar~--~~G~filRieDtD~-------------------~R-------~~~~~~~ 78 (490)
T 4g6z_A 27 RTRFAPSPTGFIHLGNIRSALYPWAFARK--MKGTFVLRIEDTDV-------------------ER-------SSQEAVD 78 (490)
T ss_dssp EEEECCCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCG-------------------GG-------CCHHHHH
T ss_pred eEEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEeCCCCc-------------------cc-------ccHHHHH
Confidence 34457999999999999999999999885 36666665544442 10 1245778
Q ss_pred HHHHHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1684 QQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1684 ~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
.+.++|+.||+ +|+. +|+.++ +...-+....+|.++|++|.-
T Consensus 79 ~i~~dl~wlGl--~~d~~~~~qS~--r~~~y~~~~~~Li~~G~aY~C 121 (490)
T 4g6z_A 79 AILEGMAWLGL--DYDEGPYYQMQ--RMDRYREVLAQMQEKGLVYPC 121 (490)
T ss_dssp HHHHHHHHTTC--CCSEEEEEGGG--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCC--CCCCCCccccc--CHHHHHHHHHHHHHCCCEEeC
Confidence 89999999999 8886 455554 444556778899999999865
No 136
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=96.67 E-value=0.0018 Score=77.45 Aligned_cols=69 Identities=23% Similarity=0.274 Sum_probs=55.8
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccC--CCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhC
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITR--NDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVR 137 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~--~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~g 137 (2492)
.+.+|||+++ +||+|+ +|.|-...+ ...+.|||.+||.+|..... ..+ ..+.++..||.||...|.+.+
T Consensus 69 S~f~VGAall~~dG~i~-~G~NvEnas~~~~~t~CAEr~Ai~~A~~~G~-~~~---~~iav~~~PCG~CRQ~l~E~~ 140 (294)
T 1ctt_A 69 SNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAISHAWLSGE-KAL---AAITVNYTPCGHCRQFMNELN 140 (294)
T ss_dssp TCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTC-CCE---EEEEESSCCCHHHHHHHTTBT
T ss_pred CCCcEEEEEEeCCCCEE-EEEcCCccCccCCCccCHHHHHHHHHHHcCC-CcE---EEEEEEcCCCHHHHHHHHHhC
Confidence 4889999999 689877 899976543 23588999999999988642 233 467889999999999999985
No 137
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=96.64 E-value=0.0016 Score=83.44 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=69.8
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHH
Q psy15223 455 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 534 (2492)
Q Consensus 455 ~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~ 534 (2492)
+==+|.|||.|||||+++.+..+.++|. ..|.-++-+=-+|. .. ...++++.
T Consensus 28 ~RFAPSPTG~lHiG~~rtal~n~l~Ar~--~~G~filRieDtD~-------------------~R-------~~~~~~~~ 79 (490)
T 4g6z_A 28 TRFAPSPTGFIHLGNIRSALYPWAFARK--MKGTFVLRIEDTDV-------------------ER-------SSQEAVDA 79 (490)
T ss_dssp EEECCCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCG-------------------GG-------CCHHHHHH
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEeCCCCc-------------------cc-------ccHHHHHH
Confidence 3446899999999999999999999985 36766665554442 11 12457889
Q ss_pred HHHHHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 535 QKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 535 ~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.++++.||+ +|+. +|+.++ +.........+|.++|++|.-
T Consensus 80 i~~dl~wlGl--~~d~~~~~qS~--r~~~y~~~~~~Li~~G~aY~C 121 (490)
T 4g6z_A 80 ILEGMAWLGL--DYDEGPYYQMQ--RMDRYREVLAQMQEKGLVYPC 121 (490)
T ss_dssp HHHHHHHTTC--CCSEEEEEGGG--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCC--CCCCCCccccc--CHHHHHHHHHHHHHCCCEEeC
Confidence 9999999999 8886 466544 444556788899999999874
No 138
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=96.60 E-value=0.0019 Score=87.03 Aligned_cols=94 Identities=21% Similarity=0.328 Sum_probs=68.1
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+++==+|.|||.||||||++.++...++|. ..| .|+.=+|.. ++.. ...+++
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~--~gG---~fiLRIEDT----------------D~~R-------~~~e~~ 118 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTARQ--YGG---QFNLRMDDT----------------NPEL-------ARQEYV 118 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHH--TTC---EEEEEECCC----------------CTTT-------CCHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH--cCC---EEEEEECcC----------------Cccc-------ccHHHH
Confidence 455558899999999999999998888773 244 444333333 2221 145688
Q ss_pred HHHHHHHHHcccccccc-CeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 533 EQQKMDFMRLGILGEWD-NSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~-~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.+.++++-||+ +|+ .+|+.++ |.........+|.++|+.|.
T Consensus 119 ~~IledL~wLGl--~wde~~~~qSe--r~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 119 DSIADDLKWLGL--DWGEHFYYASD--YFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp HHHHHHHHHHTC--CCTTCEEEGGG--GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCC--CCCCCcccHhh--hHHHHHHHHHHHHHCCCcEe
Confidence 999999999999 884 5666554 44556677889999999997
No 139
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=96.57 E-value=0.0015 Score=80.78 Aligned_cols=69 Identities=30% Similarity=0.375 Sum_probs=51.4
Q ss_pred cCeeeeecccccchhhHHHHHHHHHH--hcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~--~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s 1047 (2492)
+.+|+.+.|.||.. |..+..-++ +....| .+++|.++.+.+|+|||||.||+|++.| .+|.+|..+.+
T Consensus 169 ~~~~~v~~G~DQ~~---~~~l~rdla~~~~~~~p--~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~ 238 (323)
T 2cyb_A 169 LGVDLAVGGIDQRK---IHMLARENLPRLGYSSP--VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRK 238 (323)
T ss_dssp TTCSEEEEEGGGHH---HHHHHHHHGGGGTCCCC--EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHT
T ss_pred cCCCEEEechhhHH---HHHHHHHHHHhcCCCCc--eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHh
Confidence 46899999999984 333322222 222333 4778899999999999999999999987 48999999886
Q ss_pred c
Q psy15223 1048 T 1048 (2492)
Q Consensus 1048 ~ 1048 (2492)
+
T Consensus 239 a 239 (323)
T 2cyb_A 239 A 239 (323)
T ss_dssp S
T ss_pred c
Confidence 3
No 140
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=96.56 E-value=0.0034 Score=81.26 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHH
Q psy15223 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYE 530 (2492)
Q Consensus 451 ~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~ 530 (2492)
-+++.-=+|.|||.|||||+++-++.|.++|. ..|+-++-+--+| ++. ....
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD-------------------~~r-------~~~~ 63 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTD-------------------LER-------SERE 63 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSS-------------------CCS-------GGGH
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCC-------------------ccc-------cHHH
Confidence 35666778999999999999999999999998 6788777654333 111 1233
Q ss_pred HHHHHHHHHHHccccccccC---------eeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 531 KIEQQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 531 ~i~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.+.+.++++-||+ +|+. +|+.++ +-.....+..+|.++|..|.
T Consensus 64 ~~~~I~~~l~wlGl--~~de~p~~gg~~g~y~QS~--r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 64 YEEKLMESLRWLGL--LWDEGPDVGGDHGPYRQSE--RVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp HHHHHHHHHHHHTC--CCSBBTTTBCTTCCCBGGG--GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCC--CCCCCcccCCCCCceeeec--cHHHHHHHHHHHHHCCCeeE
Confidence 56677889999999 7875 355433 33445567889999999875
No 141
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=96.33 E-value=0.0029 Score=78.17 Aligned_cols=69 Identities=30% Similarity=0.375 Sum_probs=51.7
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+.+|+.+.|.||.. |..+-.-++ +....| ..+.+.++.+.+|+|||||.||.|++.| .+|.+|..+.+
T Consensus 169 ~~~~~v~~G~DQ~~---~~~l~rdla~~~~~~~p--~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~ 238 (323)
T 2cyb_A 169 LGVDLAVGGIDQRK---IHMLARENLPRLGYSSP--VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRK 238 (323)
T ss_dssp TTCSEEEEEGGGHH---HHHHHHHHGGGGTCCCC--EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHT
T ss_pred cCCCEEEechhhHH---HHHHHHHHHHhcCCCCc--eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHh
Confidence 46899999999985 333322222 223333 4778899999999999999999999987 49999999986
Q ss_pred c
Q psy15223 2198 T 2198 (2492)
Q Consensus 2198 ~ 2198 (2492)
+
T Consensus 239 a 239 (323)
T 2cyb_A 239 A 239 (323)
T ss_dssp S
T ss_pred c
Confidence 4
No 142
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=96.18 E-value=0.0029 Score=81.83 Aligned_cols=90 Identities=22% Similarity=0.294 Sum_probs=64.0
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 1607 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 1686 (2492)
Q Consensus 1607 ~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~ 1686 (2492)
=+|.|||.||+||+++.+....++|- ..|.-++.+==+|. .. ...++++.+.
T Consensus 6 FAPSPtG~lHiG~artal~n~l~Ar~--~~G~filRieDtD~---------------~R-----------~~~~~~~~i~ 57 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVFNWLYARH--RGGKFILRIEDTDR---------------ER-----------SRPEYTENIL 57 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCSS---------------SS-----------CCHHHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEEeeCCc---------------cc-----------cchHHHHHHH
Confidence 47999999999999999997777763 34544444433331 00 1245678899
Q ss_pred HHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1687 MDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1687 ~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
++|+.||+ +|+. +|+.++ +...-.....+|.++|++|.
T Consensus 58 ~dL~wLGl--~wde~~~~QS~--r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 58 EGLQWLGL--TWDEGPYFQSD--RLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHTTC--CCSEEEEEGGG--CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCC--CCCCCCccccC--CHHHHHHHHHHHHHCCCceE
Confidence 99999999 8986 566554 23344556778999999997
No 143
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12
Probab=96.15 E-value=0.0041 Score=74.95 Aligned_cols=53 Identities=30% Similarity=0.527 Sum_probs=48.9
Q ss_pred CHHHHHHHHHcCcEEEeccccc-ccccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 1 SLDVAREIIELGFYISFSGIVT-FKNSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
+.+++++++++|+||||+|.++ ++++..+++++..+|++|++.+||.||+.+.
T Consensus 161 ~~~~~~~~~~~g~yi~~~g~~~~~~~~~~l~~~~~~~~~drll~eTD~P~~~~~ 214 (264)
T 1xwy_A 161 TREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPR 214 (264)
T ss_dssp CHHHHHHHHHTTCEEEECGGGGCTTTSHHHHHHGGGSCGGGEEECCCTTSCCCT
T ss_pred CHHHHHHHHHCCeEEEECccccCCcCcHHHHHHHHhCCHHHEEEecCCCCcCcc
Confidence 4678999999999999999999 9888899999999999999999999998764
No 144
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12
Probab=96.05 E-value=0.0034 Score=75.37 Aligned_cols=53 Identities=28% Similarity=0.553 Sum_probs=48.7
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
+.+++++++++|+||||+|.++++++..+++++..+|++|++.|||.||+.+.
T Consensus 162 ~~~~~~~~~~~g~~i~~~g~~~~~~~~~~~~~~~~~~~dril~eTD~P~~~p~ 214 (259)
T 1zzm_A 162 SLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLN 214 (259)
T ss_dssp CHHHHHHHHHTTCEEEECGGGGCTTTCSHHHHHHHSCGGGEEECCCBTSSCCT
T ss_pred CHHHHHHHHHCCCEEEECceeeccccHHHHHHHHhCCHHHEEEecCCCCccCC
Confidence 35789999999999999999999888889999999999999999999999764
No 145
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304}
Probab=96.03 E-value=0.0017 Score=77.61 Aligned_cols=46 Identities=11% Similarity=0.461 Sum_probs=35.7
Q ss_pred CHHHHHHHHHcCcEEEec---ccccccccHHHHHHhhhcccCccccccCCCC
Q psy15223 1 SLDVAREIIELGFYISFS---GIVTFKNSKILQKVMGSISLKNMLIETDSPY 49 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~ 49 (2492)
+.++|++++++||||||+ |.+++++. ++++..+|++|+++|||.||
T Consensus 162 ~~~~a~~~l~~G~yis~~~~pg~~t~~~~---~~~v~~ipldrlLlETD~P~ 210 (261)
T 3guw_A 162 NFETLDMVLETEYWIGLTVQPGKLSAEDA---ARIVAEHGPERFMLNSDAGY 210 (261)
T ss_dssp CTTTHHHHHTSSSEEEEECC-------CC---TTGGGGCC-CCEEEECCCCC
T ss_pred CHHHHHHHHhCCEEEEecCCCCcccHHHH---HHHHHhCCcceEEEecCCCC
Confidence 457899999999999999 99999765 68899999999999999999
No 146
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=96.00 E-value=0.0072 Score=78.05 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=69.4
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+.+==+|-|||.|||||+++-+..-.++|- ..|.-++.+==+| +.. ...++.
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD-------------------~~R-------~~~~~~ 77 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTD-------------------TER-------SSREYE 77 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCC-------------------TTT-------CCHHHH
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEEeeCC-------------------ccc-------ccHHHH
Confidence 345567899999999999999999888885 3565555443332 221 133567
Q ss_pred HHHHHHHHHccccccccC---------eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 533 EQQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.+.++++.||+ |||. +|+.++- .........+|.++|++|.-
T Consensus 78 ~~I~~dL~wlGl--~wDe~~~~gG~~gp~~QSer--~~~y~~~~~~L~~~G~aY~c 129 (488)
T 3afh_A 78 QQILESLRWCGL--DWDEGPDIGGDFGPYRQSER--LEIYREYAEKLVEDKRAYYV 129 (488)
T ss_dssp HHHHHHHHHTTC--CCSBBTTTBCTTCCCBGGGC--HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCC--CCCcCCCCCCCCCCeeeeCC--HHHHHHHHHHHHHcCCeEec
Confidence 889999999999 8987 3665542 24667788999999999874
No 147
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Probab=95.94 E-value=0.0039 Score=77.60 Aligned_cols=51 Identities=14% Similarity=0.337 Sum_probs=46.7
Q ss_pred CHHHHHHHHHcCcEEEec--ccccc------------------cccHHHHHHhhhcccCccccccCCCC-CC
Q psy15223 1 SLDVAREIIELGFYISFS--GIVTF------------------KNSKILQKVMGSISLKNMLIETDSPY-LS 51 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~--~~~~~------------------~~~~~~~~~~~~~p~~~~~~etD~~~-M~ 51 (2492)
+.|+|++++++|+||||+ |.+|| +++..+++++...|++++++|||.|| |.
T Consensus 202 ~~e~a~~~~~~G~~i~~~~~G~~tf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~drilleTD~p~~l~ 273 (330)
T 2ob3_A 202 DLSYLTALAARGYLIGLDHIPYSAIGLEDNASASALLGIRSWQTRALLIKALIDQGYMKQILVSNDWTFGFS 273 (330)
T ss_dssp CHHHHHHHHHTTCEEEECCTTCCCTTCTTCHHHHHHHCSSCHHHHHHHHHHHHHTTCGGGEEECCCCCSEEC
T ss_pred CHHHHHHHHhCCCEEEeCCCccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCCCcc
Confidence 468999999999999999 99998 77778999999999999999999998 54
No 148
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=95.72 E-value=0.018 Score=74.46 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=69.4
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+.+==+|-|||.||+||+++-+..-.++|- ..|.-++.+==+|. .. ...++.
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD~-------------------~R-------~~~~~~ 77 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDT-------------------ER-------SSREYE 77 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCT-------------------TT-------CCHHHH
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEEeeCCc-------------------cc-------ccHHHH
Confidence 345567999999999999999999888875 35655555433332 11 133466
Q ss_pred HHHHHHHHHhcccccccC---------eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.++|+.+|+ +||. +|+.++ +...-+....+|.++|++|.-
T Consensus 78 ~~I~~dL~wlGl--~wDe~~~~gG~~gp~~QSe--r~~~y~~~~~~L~~~G~aY~c 129 (488)
T 3afh_A 78 QQILESLRWCGL--DWDEGPDIGGDFGPYRQSE--RLEIYREYAEKLVEDKRAYYV 129 (488)
T ss_dssp HHHHHHHHHTTC--CCSBBTTTBCTTCCCBGGG--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCC--CCCcCCCCCCCCCCeeeeC--CHHHHHHHHHHHHHcCCeEec
Confidence 789999999999 8887 366554 235567788899999999875
No 149
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12
Probab=95.59 E-value=0.0077 Score=72.71 Aligned_cols=53 Identities=32% Similarity=0.703 Sum_probs=48.9
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
+.+++++++++|+|+||+|.++++++..+++++..+|.+|++.+||.||+.+.
T Consensus 169 ~~~~~~~~~~~g~y~~~sg~~~~~~~~~l~~~i~~~~~driL~eTD~P~~~~~ 221 (268)
T 1j6o_A 169 DYEWAKKFIDLGFLLGIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFLPPQ 221 (268)
T ss_dssp CHHHHHHHHHHTEEEEECGGGGCTTCHHHHHHHHHHCGGGEEECCCBTSCCCG
T ss_pred CHHHHHHHHHCCCeEEecccccccchHHHHHHHHhCChhhEEEecCCCCCCCc
Confidence 35789999999999999999999888899999999999999999999999764
No 150
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=95.46 E-value=0.016 Score=74.46 Aligned_cols=91 Identities=18% Similarity=0.233 Sum_probs=65.2
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 1607 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 1686 (2492)
Q Consensus 1607 ~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~ 1686 (2492)
=+|-|||.||+||+++-++.-.++|- ..|.-++.+==+|. .. ...++.+.+.
T Consensus 6 FaPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD~-------------------~R-------~~~~~~~~I~ 57 (468)
T 1j09_A 6 IAPSPTGDPHVGTAYIALFNYAWARR--NGGRFIVRIEDTDR-------------------AR-------YVPGAEERIL 57 (468)
T ss_dssp ECCCCSSSCBHHHHHHHHHHHHHHHH--TTCEEEECBCCCCT-------------------TS-------CCTTHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC-------------------cc-------cChHHHHHHH
Confidence 47999999999999999999998884 45655554433332 11 1234567889
Q ss_pred HHHHHhcccccccCe---------eccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1687 MDFMRLGILGEWDNS---------YKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1687 ~~~~~lGi~~Dw~~~---------y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
++++.+|+ |||.. |+.++ +-..-.....+|.++|++|.-
T Consensus 58 ~dl~wlGl--~wd~~~~~gG~~gp~~QS~--r~~~y~~~~~~L~~~G~aY~c 105 (468)
T 1j09_A 58 AALKWLGL--SYDEGPDVGGPHGPYRQSE--RLPLYQKYAEELLKRGWAYRA 105 (468)
T ss_dssp HHHHHTTC--CCSBBTTTBCTTCCCBGGG--CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHcCC--CCCCCCCCCCCCCCeeccC--CHHHHHHHHHHHHHcCCeEEc
Confidence 99999999 89875 55554 233445667889999999875
No 151
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Probab=95.39 E-value=0.0097 Score=73.13 Aligned_cols=50 Identities=32% Similarity=0.605 Sum_probs=43.8
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSP 52 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~ 52 (2492)
+.++|++++++|+||||+|. +++++. .++++..+|++|++.|||.|||.+
T Consensus 176 ~~~~~~~~l~~g~yi~~~g~-~~~~~~-~~~~~~~~p~drlLleTD~P~~~~ 225 (301)
T 2xio_A 176 TKEAAAALIDLDLYIGFNGC-SLKTEA-NLEVLKSIPSEKLMIETDAPWCGV 225 (301)
T ss_dssp CHHHHHHHHHTTCEEEECGG-GSSSHH-HHHHHHTSCGGGEEECCCTTSCCC
T ss_pred CHHHHHHHHhcCcEEEEccc-ccCChH-HHHHHHhCChHHEEEecCCCcccc
Confidence 46899999999999999997 676655 469999999999999999999864
No 152
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=95.30 E-value=0.017 Score=74.67 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=67.8
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHH
Q psy15223 455 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 534 (2492)
Q Consensus 455 ~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~ 534 (2492)
+==+|-|||.|||||+++-+..-.++|- ..|.-++.+==+ ++.. ...++.+.
T Consensus 9 ~RFAPsPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRieDt-------------------D~~R-------~~~~~~~~ 60 (498)
T 2ja2_A 9 VRFCPSPTGTPHVGLVRTALFNWAYARH--TGGTFVFRIEDT-------------------DAQR-------DSEESYLA 60 (498)
T ss_dssp EEECCCSSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCC-------------------CTTT-------CCHHHHHH
T ss_pred EEECcCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECcC-------------------CCcc-------cChHHHHH
Confidence 3347899999999999999999999995 356555544322 2222 22346789
Q ss_pred HHHHHHHccccccccC---------eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 535 QKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 535 ~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.++++-||+ |||. +|+.++ +-..-.....+|.++|++|.-
T Consensus 61 I~~~L~wlGl--~wDegp~~gG~~~~~~QS~--r~~~y~~~~~~L~~~g~aY~c 110 (498)
T 2ja2_A 61 LLDALRWLGL--DWDEGPEVGGPYGPYRQSQ--RAEIYRDVLARLLAAGEAYHA 110 (498)
T ss_dssp HHHHHHHHTC--CCSBBTTTBCTTCCCBGGG--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCC--CcCCCcCcCCCCCCeeeec--CHHHHHHHHHHHHHcCCeEEe
Confidence 9999999999 9987 566655 233445678899999999874
No 153
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=95.26 E-value=0.03 Score=72.26 Aligned_cols=94 Identities=16% Similarity=0.207 Sum_probs=68.0
Q ss_pred EEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q psy15223 1604 LHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIE 1683 (2492)
Q Consensus 1604 i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~ 1683 (2492)
.+==+|-|||.||+||+++-+..-.++|- ..|.-++.+==+| +.. ...++.+
T Consensus 8 r~RFAPsPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRieDtD-------------------~~R-------~~~~~~~ 59 (498)
T 2ja2_A 8 RVRFCPSPTGTPHVGLVRTALFNWAYARH--TGGTFVFRIEDTD-------------------AQR-------DSEESYL 59 (498)
T ss_dssp EEEECCCSSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCC-------------------TTT-------CCHHHHH
T ss_pred eEEECcCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECcCC-------------------Ccc-------cChHHHH
Confidence 33457999999999999999999999984 4666555543332 211 1234667
Q ss_pred HHHHHHHHhcccccccC---------eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1684 QQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1684 ~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
.+.++|+-+|+ |||. +|+.++ +...-+....+|.++|++|.-
T Consensus 60 ~I~~~L~wlGl--~wDegp~~gG~~~~~~QS~--r~~~y~~~~~~L~~~g~aY~c 110 (498)
T 2ja2_A 60 ALLDALRWLGL--DWDEGPEVGGPYGPYRQSQ--RAEIYRDVLARLLAAGEAYHA 110 (498)
T ss_dssp HHHHHHHHHTC--CCSBBTTTBCTTCCCBGGG--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCC--CcCCCcCcCCCCCCeeeec--CHHHHHHHHHHHHHcCCeEEe
Confidence 89999999999 8987 566655 233445677899999999875
No 154
>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis}
Probab=95.24 E-value=0.011 Score=74.13 Aligned_cols=53 Identities=11% Similarity=0.264 Sum_probs=46.7
Q ss_pred CHHHHHHHHHcCcEEEeccc---ccc----------cccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 1 SLDVAREIIELGFYISFSGI---VTF----------KNSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~---~~~----------~~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
+.++|++++++|+||||+|. ++| +++..+++++...|++|+++++|.+||.+.
T Consensus 236 ~~e~a~~~l~~G~~I~~~g~g~~~tf~~~~~~~~d~~~a~~l~~li~~g~~drilleTD~p~l~~~ 301 (365)
T 3rhg_A 236 DIDYQCKMLDRGVWLEFDMIGLDISFPKEGAAPSVMDTVEAVATLIERGYGNQIVLSHDVFLKQMW 301 (365)
T ss_dssp CHHHHHHHHHTTCEEEECCTTCCCBCSSSCBCCCHHHHHHHHHHHHHTTCGGGEEECCCCCSGGGS
T ss_pred CHHHHHHHHhCCCEEEecCCCccccccccccccchHHHHHHHHHHHHhCCCCcEEEeCCCCCCCCC
Confidence 46899999999999999997 677 456679999999999999999999998664
No 155
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.22 E-value=0.016 Score=71.98 Aligned_cols=73 Identities=21% Similarity=0.162 Sum_probs=35.6
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s 1047 (2492)
+.+|+.+.|.||.. ++....=.+.-+....| -.+++.++...+|+|||||.||.|+..| ++-.++.++=.+.+
T Consensus 209 ~~~~i~p~G~DQ~~-~i~l~rdla~r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 209 YGCRVQLGGSDQLG-NIMSGYEFINKLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVR 281 (356)
T ss_dssp HCCCEEEEEGGGHH-HHHHHHHHHHHHSSCCC--EEEEECCCC-------------CCBSST--TTSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHH-HHHHHHHHHHHhCCCCc--cccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHc
Confidence 37899999999983 32222212222333333 4567788888899999999999998877 23455555555554
No 156
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=95.13 E-value=0.029 Score=71.31 Aligned_cols=73 Identities=19% Similarity=0.131 Sum_probs=47.5
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHh-cCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l-~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+.+|+.++|.||.. ++....=.+.-+ .+.. .-.+++.++.+.+|+|||||.||.|+..+- +-.++.++=++.+
T Consensus 185 ~~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~--~~~l~~pll~~ldG~KMSKS~~naI~L~d~--~tsp~~i~~ki~~ 258 (420)
T 1jil_A 185 LNCKIQVGGSDQWG-NITSGIELMRRMYGQTD--AYGLTIPLVTKSDGKKFGKSESGAVWLDAE--KTSPYEFYQFWIN 258 (420)
T ss_dssp HCEEEEEEEGGGHH-HHHHHHHHHHHHHCCCC--CEEEEECCCBCTTSCBTTBCSSSBCBSSTT--TSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHH-HHHHHHHHHHHhcCCCC--eeEeecccccCCccccccCCCCCeEecCCC--CCCHHHHHHHHhc
Confidence 47899999999984 221111112223 3333 346778888889999999999999988762 3345555544443
No 157
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=95.12 E-value=0.017 Score=75.59 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=63.2
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 457 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 536 (2492)
Q Consensus 457 gPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~ 536 (2492)
=+|-|||.||||||++-++.-.++|- ..|.-++.+= +.++.. ...++.+.+.
T Consensus 29 FAPsPtG~LHiG~artAl~n~~~Ar~--~~G~fiLRie-------------------DtD~~R-------~~~~~~~~I~ 80 (512)
T 4gri_A 29 YAPSPTGLQHIGGIRTALFNYFFAKS--CGGKFLLRIE-------------------DTDQSR-------YSPEAENDLY 80 (512)
T ss_dssp ECCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEECBC-------------------CCCTTS-------CCHHHHHHHH
T ss_pred eCcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeC-------------------cCCCCc-------CCHHHHHHHH
Confidence 38999999999999999999999884 3565544432 233322 1234678889
Q ss_pred HHHHHccccccccC---------eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 537 MDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 537 ~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
++|+-||+ +||. +|+-++ +...-.....+|.++|++|.-
T Consensus 81 ~~L~wlGl--~wDe~p~~~g~~~py~QS~--r~~~Y~~~~~~L~~~G~aY~C 128 (512)
T 4gri_A 81 SSLKWLGI--SFDEGPVVGGDYAPYVQSQ--RSAIYKQYAKYLIESGHAYYC 128 (512)
T ss_dssp HHHHHHTC--CCSBBTTTBCTTCCCBGGG--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHcCC--CCCcCCccCCCCCCccccc--hHHHHHHHHHHHHHcCCcccc
Confidence 99999999 8874 333322 223334577889999999874
No 158
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.11 E-value=0.022 Score=70.81 Aligned_cols=71 Identities=20% Similarity=0.157 Sum_probs=36.3
Q ss_pred cCceeeecccchhhhhHHHHHHHH--HHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTS--IILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~--~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+.+|+.++|.||.. |-.+-.- .-+....| -.+++.++.+.+|+|||||.||.|+..| ++-.++.++=.+.+
T Consensus 209 ~~~~i~p~G~DQ~~---~i~l~rdla~r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 209 YGCRVQLGGSDQLG---NIMSGYEFINKLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVR 281 (356)
T ss_dssp HCCCEEEEEGGGHH---HHHHHHHHHHHHSSCCC--EEEEECCCC-------------CCBSST--TTSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHH---HHHHHHHHHHHhCCCCc--cccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHc
Confidence 37899999999984 2222222 22333333 4567788888899999999999999877 24556666666654
No 159
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=95.10 E-value=0.017 Score=62.49 Aligned_cols=92 Identities=15% Similarity=0.245 Sum_probs=59.3
Q ss_pred CCCCCCCcccccccccccCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc--
Q psy15223 46 DSPYLSPIPHRAKLALIAGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT-- 122 (2492)
Q Consensus 46 D~~~M~~a~~~a~~~~~~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t-- 122 (2492)
|...+..|.+....+.-+...+|||++. .||+|+ +|.|-.. -..+.|||..||-+|...... .+. ..+-++
T Consensus 31 d~~Li~~A~~a~~~~PyS~~f~VGAAll~~dG~i~-tG~NVEn--~~~~lCAEr~Ai~~Avs~G~~-~~~--ai~vv~~~ 104 (158)
T 3oj6_A 31 GQNLIDTATSVINGIPVSDFYSVASAAISDDGRVF-SGVNVYH--FNGGPCAELVVLGVAAAAGAT-KLT--HIVAIANE 104 (158)
T ss_dssp HHHHHHHHHHHHHTSCCCSSSCEEEEEEETTSCEE-EEECCCC--TTTCCCHHHHHHHHHHHTTCC-CEE--EEEEEETT
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCCCEE-EEEcccc--CCccccHHHHHHHHHHHhCCC-ceE--EEEEEeCC
Confidence 4445544444333221122378999998 689987 9999763 345889999999999876532 222 222332
Q ss_pred ----CCChHhHHHHHHHhCCc-eEEE
Q psy15223 123 ----LEPCAMCAGAIIHVRLG-EIIY 143 (2492)
Q Consensus 123 ----~EPC~mC~~ai~~~gi~-rvv~ 143 (2492)
.-||-+|-..|...+-. +|+.
T Consensus 105 ~~~~~~PCG~CRQvL~Ef~~~~~vil 130 (158)
T 3oj6_A 105 GRGILSPCGRCRQVLADLHPGIKAIV 130 (158)
T ss_dssp TTEEECCCHHHHHHHHHHSTTCEEEE
T ss_pred CCCcCCCCHHHHHHHHHhCCCCEEEE
Confidence 25999999999997632 3443
No 160
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=95.10 E-value=0.015 Score=71.41 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=50.2
Q ss_pred cCceeeecccchhhhhHHHHHHH--HHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLT--SIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~--~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+++|+.++|.||.. + -.+-. +.-+....+ -.+++.++.+.+|+|||||.||.|+..| ++..++.++=.+.+
T Consensus 190 ~~~~v~~gG~DQ~~-~--i~l~rdla~r~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 190 YGVVLCIGGSDQWG-N--ITSGIDLTRRLHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWIN 262 (322)
T ss_dssp HCEEEEEECTTCHH-H--HHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHT
T ss_pred CCceEEecCchhHH-H--HHHHHHHHHHhCCCCc--eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhC
Confidence 37899999999984 2 22222 122233333 3557788888899999999999999887 56778777766664
No 161
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=95.07 E-value=0.027 Score=71.25 Aligned_cols=71 Identities=18% Similarity=0.064 Sum_probs=46.5
Q ss_pred cCceeeecccchhhhhHHHHHHH--HHHh-cCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLT--SIIL-NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~--~~~l-~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
|.+|+.++|.||.. |-.+-. +.-+ .+.. .-.+++.++.+.+|+|||||.||.|+..+- +-+++.++=++.
T Consensus 184 ~~~~i~~gG~DQ~~---ni~lgrdlarr~~~~~~--~~~lt~pll~~ldG~KMSKS~~naI~L~d~--~tsp~~i~qki~ 256 (419)
T 2ts1_A 184 EGCRLQIGGSDQWG---NITAGLELIRKTKGEAR--AFGLTIPLVTKADGTKFGKTESGTIWLDKE--KTSPYEFYQFWI 256 (419)
T ss_dssp HCEEEEEEEGGGHH---HHHHHHHHHHHHHC--C--CEEEEECCCCCTTSCCTTCCSSCCCBSSTT--TSCHHHHHHHHH
T ss_pred CCCcEEeccHHHHH---HHHHHHHHHHHhcCCCC--eeecccccccCCCcccccCCCCCeEecCCC--CCCHHHHHHHHh
Confidence 47899999999984 222221 1122 2233 346778888889999999999999998762 334555554444
Q ss_pred c
Q psy15223 2197 S 2197 (2492)
Q Consensus 2197 s 2197 (2492)
+
T Consensus 257 ~ 257 (419)
T 2ts1_A 257 N 257 (419)
T ss_dssp T
T ss_pred c
Confidence 3
No 162
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=95.04 E-value=0.025 Score=71.04 Aligned_cols=61 Identities=28% Similarity=0.230 Sum_probs=40.1
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHh-------------cCCCC--ceEEEEeeEEEcCCCccccccCCCccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIIL-------------NKSAP--YKALLTHGFVVDSKGKKMSKSKGNIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~-------------~~~~p--~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ 1031 (2492)
+.+|+.+.|.||. +++....=.+.-. ....+ -.-.+++.++...+|+|||||.||.|+..+
T Consensus 231 ~~~~i~~gG~DQ~-~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 231 QGVQMQIGGSDQY-GNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp HCEEEEEECTTCH-HHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSST
T ss_pred CCccEEecCcchH-hHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccC
Confidence 4799999999996 2322211111111 11111 145668888889999999999999998876
No 163
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=95.01 E-value=0.03 Score=70.95 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=47.3
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCC-ccCcchhhhccChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGN-IIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN-vi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+.+|+.++|.||.. ++....=.+.-+....| -.+++.++...+|+|||||.|| .|+..+ ++.+++.++=++.+
T Consensus 186 ~~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~ 259 (432)
T 2jan_A 186 HGCTLQIGGADQWG-NIIAGVRLVRQKLGATV--HALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVN 259 (432)
T ss_dssp HCCCEEEECSTTHH-HHHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHH-HHHHHHHHHHHhCCCCc--cccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhc
Confidence 47899999999984 22111111122233333 4677888888999999999999 898876 23455555555554
No 164
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=94.83 E-value=0.019 Score=70.63 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=49.8
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s 1047 (2492)
+.+|+.+.|.||.. ++....=.+.-+....+ -.+++.++...+|+|||||.||.|+..| ++..++.++=.+.+
T Consensus 190 ~~~~v~~gG~DQ~~-~i~l~rdla~r~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 190 YGVVLCIGGSDQWG-NITSGIDLTRRLHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWIN 262 (322)
T ss_dssp HCEEEEEECTTCHH-HHHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHT
T ss_pred CCceEEecCchhHH-HHHHHHHHHHHhCCCCc--eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhC
Confidence 37999999999983 32222222222333333 3457778888899999999999999887 55667777766654
No 165
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A*
Probab=94.72 E-value=0.011 Score=73.42 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=45.6
Q ss_pred CHHHHHHHHHcCcEEEeccccc---------ccccHHHHHHhhhcccCccccccCCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGIVT---------FKNSKILQKVMGSISLKNMLIETDSPYLS 51 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~p~~~~~~etD~~~M~ 51 (2492)
+.++|++++++|+||||+|..+ ++++..+++++...|++|++++||.|||.
T Consensus 226 ~~e~a~~~l~~G~~i~~~g~~t~~~~~~p~~~~~~~~l~~li~~~~~drilleTD~p~~~ 285 (339)
T 3gtx_A 226 DPAYHRETLRHGVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYADRLLLSHDSIWHW 285 (339)
T ss_dssp CHHHHHHHHTTTCEEEECCTTCCSSTTCCCHHHHHHHHHHHHHTTCGGGEEECCCCEEEE
T ss_pred CHHHHHHHHHcCcEEEEccCccccccCCCchHHHHHHHHHHHHhcCCCeEEEecCCCccc
Confidence 4689999999999999999753 47778899999999999999999999973
No 166
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=94.70 E-value=0.047 Score=71.42 Aligned_cols=92 Identities=18% Similarity=0.171 Sum_probs=62.5
Q ss_pred cCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Q psy15223 1606 DGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQ 1685 (2492)
Q Consensus 1606 ~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~ 1685 (2492)
==+|-|||.||||||++-++.-.+||- ..|.-++.+==+| ++. ...++.+.+
T Consensus 28 RFAPsPtG~LHiG~artAl~n~~~Ar~--~~G~fiLRieDtD-------------------~~R-------~~~~~~~~I 79 (512)
T 4gri_A 28 RYAPSPTGLQHIGGIRTALFNYFFAKS--CGGKFLLRIEDTD-------------------QSR-------YSPEAENDL 79 (512)
T ss_dssp EECCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEECBCCCC-------------------TTS-------CCHHHHHHH
T ss_pred EeCcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCC-------------------CCc-------CCHHHHHHH
Confidence 348999999999999999999998874 4565554442222 211 123456788
Q ss_pred HHHHHHhcccccccC---------eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1686 KMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1686 ~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
.++|+-||+ +||. +|+-++ +...-+....+|.++|++|.-
T Consensus 80 ~~~L~wlGl--~wDe~p~~~g~~~py~QS~--r~~~Y~~~~~~L~~~G~aY~C 128 (512)
T 4gri_A 80 YSSLKWLGI--SFDEGPVVGGDYAPYVQSQ--RSAIYKQYAKYLIESGHAYYC 128 (512)
T ss_dssp HHHHHHHTC--CCSBBTTTBCTTCCCBGGG--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCC--CCCcCCccCCCCCCccccc--hHHHHHHHHHHHHHcCCcccc
Confidence 899999999 7774 233322 122234567789999999864
No 167
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2}
Probab=94.68 E-value=0.016 Score=72.80 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=44.8
Q ss_pred CHHHHHHHHHcCcEEEeccccc---c-----------cccHHHHHHhhhcccCccccccCCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGIVT---F-----------KNSKILQKVMGSISLKNMLIETDSPYLS 51 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~---~-----------~~~~~~~~~~~~~p~~~~~~etD~~~M~ 51 (2492)
+.++|++++++|+||||+|..+ | +++..+++++...|++|++++||.+++.
T Consensus 245 ~~e~a~~~l~~G~~I~f~g~gt~~~f~~~~~~~~~d~~ra~~l~~lv~~gp~drilleTD~p~~~ 309 (364)
T 3k2g_A 245 DPVYQATLAQRGAFLEFDMIGMDFFYADQGVQCPSDDEVARAILGLADHGYLDRILLSHDVFVKM 309 (364)
T ss_dssp CHHHHHHHHHHTCEEEECCTTCCCEETTTTEECCCHHHHHHHHHHHHHTTCGGGEEECCCCCSGG
T ss_pred CHHHHHHHHhCCcEEEecCCcccccccccccccccHHHHHHHHHHHHHhCCcccEEEeCCCCCCC
Confidence 4689999999999999999755 5 4567799999999999999999999863
No 168
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=94.67 E-value=0.037 Score=69.62 Aligned_cols=75 Identities=20% Similarity=0.120 Sum_probs=45.4
Q ss_pred cCceeeecccchhhhhHHHH--HHHHHH-h----------cCCcc--ccEEEEeeeEEcCCCceeeeccCCccCcchhhh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSS--LLTSII-L----------NKSAP--YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN 2184 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~--l~~~~~-l----------~~~~p--fk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~ 2184 (2492)
+.+|+.++|.||.. ++... +....- . ..+.+ -.-.+++.++.+.+|+|||||.||.|+..+-
T Consensus 231 ~~~~i~~gG~DQ~~-ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~-- 307 (392)
T 1y42_X 231 QGVQMQIGGSDQYG-NIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDPY-- 307 (392)
T ss_dssp HCEEEEEECTTCHH-HHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSSTT--
T ss_pred CCccEEecCcchHh-HHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccCC--
Confidence 47999999999962 22111 111100 0 11111 2346788888899999999999999988762
Q ss_pred ccChhHHHHHHhc
Q psy15223 2185 LFGAEILRLWVAS 2197 (2492)
Q Consensus 2185 ~yGaD~lR~~l~s 2197 (2492)
+-+++.++=++.+
T Consensus 308 ~tsp~~i~qki~~ 320 (392)
T 1y42_X 308 QTSVFDFYGYFVR 320 (392)
T ss_dssp TSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHc
Confidence 2345445444443
No 169
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=94.62 E-value=0.045 Score=57.81 Aligned_cols=70 Identities=29% Similarity=0.348 Sum_probs=52.9
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccC-cccCCCeEEEEc------CCChHhHHHHHHH
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNN-YRFSKNYKIYVT------LEPCAMCAGAIIH 135 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~-~~l~~~~~ly~t------~EPC~mC~~ai~~ 135 (2492)
.+.+|||++. +||+|+ +|.|-.+.....+.|||..||-+|...... ..+. .+.++ .-||-+|-..|.+
T Consensus 30 S~F~VGAAll~~dG~iy-tG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~~~i~---aiavv~~~~~~~~PCG~CRQ~l~E 105 (138)
T 3dmo_A 30 SNFKVGAALVTNDGKVF-HGCNVENASYGLCNCAERTALFSALAAGYRPGEFA---AIAVVGETHGPIAPCGACRQVMIE 105 (138)
T ss_dssp TCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEE---EEEEEESCSSSCCCCHHHHHHHHH
T ss_pred CCCCEEEEEEeCCCCEE-EEEeecccccccccCHHHHHHHHHHHcCCCcccEE---EEEEEcCCCCccCCCHHHHHHHHH
Confidence 4678999998 688876 899987766666899999999999876432 0232 23333 5699999999998
Q ss_pred hC
Q psy15223 136 VR 137 (2492)
Q Consensus 136 ~g 137 (2492)
.+
T Consensus 106 f~ 107 (138)
T 3dmo_A 106 LG 107 (138)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 170
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=94.61 E-value=0.039 Score=70.98 Aligned_cols=91 Identities=18% Similarity=0.238 Sum_probs=65.6
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 457 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 536 (2492)
Q Consensus 457 gPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~ 536 (2492)
=+|-|||.||||||++-++.-.++|- ..|.-++.+==+| +.. ...++++.+.
T Consensus 6 FaPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD-------------------~~R-------~~~~~~~~I~ 57 (468)
T 1j09_A 6 IAPSPTGDPHVGTAYIALFNYAWARR--NGGRFIVRIEDTD-------------------RAR-------YVPGAEERIL 57 (468)
T ss_dssp ECCCCSSSCBHHHHHHHHHHHHHHHH--TTCEEEECBCCCC-------------------TTS-------CCTTHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCC-------------------Ccc-------cChHHHHHHH
Confidence 37999999999999999999999884 3565544443332 211 1234678999
Q ss_pred HHHHHccccccccCe---------eecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 537 MDFMRLGILGEWDNS---------YKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 537 ~~~~~lGi~~Dw~~~---------y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
++++-||+ |||.. |+.++ +-..-.....+|.++|++|.-
T Consensus 58 ~dl~wlGl--~wd~~~~~gG~~gp~~QS~--r~~~y~~~~~~L~~~G~aY~c 105 (468)
T 1j09_A 58 AALKWLGL--SYDEGPDVGGPHGPYRQSE--RLPLYQKYAEELLKRGWAYRA 105 (468)
T ss_dssp HHHHHTTC--CCSBBTTTBCTTCCCBGGG--CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHcCC--CCCCCCCCCCCCCCeeccC--CHHHHHHHHHHHHHcCCeEEc
Confidence 99999999 89874 55544 233445678899999999874
No 171
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=94.49 E-value=0.039 Score=69.83 Aligned_cols=72 Identities=19% Similarity=0.080 Sum_probs=45.5
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHh-cCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhh
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 1046 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~-~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~ 1046 (2492)
+.+|+.+.|.||.. ++....=.+.-+ .+.. .-.+++.++...+|+|||||.||.|+..+= +-.++.++=++.
T Consensus 184 ~~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~--~~~lt~pll~~ldG~KMSKS~~naI~L~d~--~tsp~~i~qki~ 256 (419)
T 2ts1_A 184 EGCRLQIGGSDQWG-NITAGLELIRKTKGEAR--AFGLTIPLVTKADGTKFGKTESGTIWLDKE--KTSPYEFYQFWI 256 (419)
T ss_dssp HCEEEEEEEGGGHH-HHHHHHHHHHHHHC--C--CEEEEECCCCCTTSCCTTCCSSCCCBSSTT--TSCHHHHHHHHH
T ss_pred CCCcEEeccHHHHH-HHHHHHHHHHHhcCCCC--eeecccccccCCCcccccCCCCCeEecCCC--CCCHHHHHHHHh
Confidence 47999999999983 222221112222 2222 356678888889999999999999988761 233444444444
No 172
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=94.48 E-value=0.043 Score=69.67 Aligned_cols=72 Identities=19% Similarity=0.129 Sum_probs=46.5
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHh-cCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhh
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 1046 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~-~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~ 1046 (2492)
+.+|+.+.|.||.. ++....=.+.-+ .+.. .-.+++.++...+|+|||||.||.|+..+= +-.++.++=++.
T Consensus 185 ~~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~--~~~l~~pll~~ldG~KMSKS~~naI~L~d~--~tsp~~i~~ki~ 257 (420)
T 1jil_A 185 LNCKIQVGGSDQWG-NITSGIELMRRMYGQTD--AYGLTIPLVTKSDGKKFGKSESGAVWLDAE--KTSPYEFYQFWI 257 (420)
T ss_dssp HCEEEEEEEGGGHH-HHHHHHHHHHHHHCCCC--CEEEEECCCBCTTSCBTTBCSSSBCBSSTT--TSCHHHHHHHHH
T ss_pred CCCcEEeccHHHHH-HHHHHHHHHHHhcCCCC--eeEeecccccCCccccccCCCCCeEecCCC--CCCHHHHHHHHh
Confidence 47999999999983 222222122223 3332 456678888889999999999999988761 233444444444
No 173
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=94.14 E-value=0.043 Score=69.57 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=46.7
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCC-ccCcchhhhhcChhhHHHHhhc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGN-IIKPQKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN-~i~p~~ii~~yGaD~lRl~l~s 1047 (2492)
+.+|+.+.|.||.. ++....=.+.-+.... .-.+++.++...+|+|||||.|| .|+..+ ++-+++.++=++.+
T Consensus 186 ~~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~--~~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~ 259 (432)
T 2jan_A 186 HGCTLQIGGADQWG-NIIAGVRLVRQKLGAT--VHALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVN 259 (432)
T ss_dssp HCCCEEEECSTTHH-HHHHHHHHHHHHHCCC--CEEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHH-HHHHHHHHHHHhCCCC--ccccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhc
Confidence 47899999999983 2222211222233333 34566788888999999999999 898776 23344444444443
No 174
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Probab=94.14 E-value=0.033 Score=67.23 Aligned_cols=50 Identities=30% Similarity=0.445 Sum_probs=45.0
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSP 52 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~ 52 (2492)
+.+++++++++|+||||+|.+++. ..+++++..+|.++++.+||.|||.+
T Consensus 173 ~~~~~~~~~~~g~~i~~~g~~~~~--~~~~~~~~~~~~drll~eTD~P~~~p 222 (272)
T 2y1h_A 173 RPSVAMEGVRAGYFFSIPPSIIRS--GQKQKLVKQLPLTSICLETDSPALGP 222 (272)
T ss_dssp CHHHHHHHHHTTCEEEECGGGGTC--HHHHHHHHHSCGGGEEECCCTTSSCS
T ss_pred CHHHHHHHHHCCCEEEECCcccCc--HHHHHHHHhCCHHHEEEecCCCCCCC
Confidence 358899999999999999998863 47999999999999999999999876
No 175
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*
Probab=94.10 E-value=0.022 Score=71.13 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=43.8
Q ss_pred CHHHHHHHH-HcCcEEEeccccccc------ccHHHHHHhhhcccCccccccCCCCC
Q psy15223 1 SLDVAREII-ELGFYISFSGIVTFK------NSKILQKVMGSISLKNMLIETDSPYL 50 (2492)
Q Consensus 1 ~~~~~~~~~-~~g~~~~~~~~~~~~------~~~~~~~~~~~~p~~~~~~etD~~~M 50 (2492)
+.++|++++ ++|+||||+|..+++ ++..+++++...|++|++++||.||+
T Consensus 222 ~~~~a~~~l~~~G~yI~f~g~~~~~~~~~~~ra~~l~~lv~~~p~drILleTDap~~ 278 (363)
T 3ovg_A 222 DKYYYEKVIKETGVTLCFDGPDRVKYYPDSLLAENIKYLVDKGLQKHITLSLDAGRI 278 (363)
T ss_dssp CHHHHHHHHHHHCCEEEECCTTCTTTCCHHHHHHHHHHHHHTTCGGGEEECCCCCSG
T ss_pred CHHHHHHHHHHCCcEEEECCeeccccCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Confidence 357899999 999999999987553 55679999999999999999999965
No 176
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0
Probab=93.77 E-value=0.034 Score=68.70 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=43.2
Q ss_pred CHHHHHHHHHcCcEEEeccccccc------ccHHHHHHhhhcccCccccccCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFK------NSKILQKVMGSISLKNMLIETDSPYL 50 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~p~~~~~~etD~~~M 50 (2492)
+.++|++++++|+||||+|..+++ +...+++++...|++|+++++|.||+
T Consensus 221 ~~e~a~~~l~~G~~i~~~g~~t~~~~~~~~~~~~l~~lv~~g~~drilleTD~p~~ 276 (330)
T 3pnz_A 221 DPYYHKQVAKTGAFMSFDGIAKIKYAPESARIAAILYLVSEGFEDQILVSGDTARK 276 (330)
T ss_dssp CHHHHHHHHTTTCEEEECCTTCTTTCCHHHHHHHHHHHHHTTCGGGEEECCCCCSG
T ss_pred CHHHHHHHHHcCcEEEEccCcccCCCChHHHHHHHHHHHHcCCCCeEEEeCCCCCC
Confidence 468999999999999999987642 34568889999999999999999995
No 177
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=93.49 E-value=0.067 Score=68.04 Aligned_cols=69 Identities=23% Similarity=0.230 Sum_probs=48.5
Q ss_pred CceeeecccchhhhhHHHHHHHHHHh-cCCccccEEEEeeeEEcCCCc-eeeeccCCccCcchhhhccChhHHHHHHhcc
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYKALLTHGFVVDSKGK-KMSKSKGNIIKPQKLCNLFGAEILRLWVAST 2198 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l-~~~~pfk~v~~hG~vld~~G~-KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~ 2198 (2492)
-+|+.++|.||.. |-.+-.-++- .+..| ...+++.++...+|. |||||.||.|+..| .++.++=++.+.
T Consensus 187 ~~~l~~gG~DQ~~---ni~l~rdlarr~~~~~-~~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 187 RADVEMGGTDQRF---NLLVGREVQRAYGQSP-QVCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp TCSEEEEEGGGHH---HHHHHHHHHHHTTCCC-CEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CccEEEechHHHH---HHHHHHHHHHHhCCCC-ceEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 4799999999973 2222222221 22222 457788898889996 99999999999887 677777766653
No 178
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=93.41 E-value=0.063 Score=68.27 Aligned_cols=69 Identities=22% Similarity=0.179 Sum_probs=48.1
Q ss_pred CeeeeecccccchhhHHHHHHHHHHh-cCCCCceEEEEeeEEEcCCCc-cccccCCCccCcchhhhhcChhhHHHHhhcc
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYKALLTHGFVVDSKGK-KMSKSKGNIIKPQKLCNLFGAEILRLWVAST 1048 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~-~~~~p~k~v~~hG~vld~~G~-KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~ 1048 (2492)
.+|+.+.|.||.. |-.+..-++- .+.. ....+++.++...+|. |||||.||.|+..| .++.++=.+.+.
T Consensus 187 ~~~l~~gG~DQ~~---ni~l~rdlarr~~~~-~~~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 187 RADVEMGGTDQRF---NLLVGREVQRAYGQS-PQVCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp TCSEEEEEGGGHH---HHHHHHHHHHHTTCC-CCEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CccEEEechHHHH---HHHHHHHHHHHhCCC-CceEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 4899999999973 3232222221 1222 2457788898889996 99999999999887 677777666653
No 179
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=92.60 E-value=0.19 Score=56.47 Aligned_cols=152 Identities=18% Similarity=0.147 Sum_probs=94.7
Q ss_pred ccccHHHHHHHHHHHHhc---cccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccc-cchhhHhHHHHHHHH
Q psy15223 1388 GGVMQKQCEKLLKSFFIK---RRNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCII-QLNNERIIKKRIRWK 1463 (2492)
Q Consensus 1388 ~g~l~~e~~~l~~~f~~~---rr~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~-~~~~~~~~~~~~r~~ 1463 (2492)
.|=+.-=|..|+..+|.. |++-.+.+..-= +. .-.+.+-+...+-.. .++. .|+-
T Consensus 27 ~GR~DIl~r~l~~al~~s~~~R~dv~vyl~l~~--~p------------~p~~ti~f~g~~v~~v~Pde-------R~~~ 85 (197)
T 2qmm_A 27 AGRMDVLCRCTSQALFISHGIRRDVEVYLLLLG--PP------------SPPKSILIKGDEVRRMSPDE-------RNVA 85 (197)
T ss_dssp TTSHHHHHHHHHHHHEETTEECTTEEEEEEECC--SS------------SCCEEEEEETTTCCSCCSSH-------HHHH
T ss_pred CCCceeHHHHHHHHHhhhhcccCCeEEEEEECC--CC------------CCCeeEEecCCeEEEcChhH-------HHHH
Confidence 666666788888888865 444444333321 11 223344444444322 2222 1555
Q ss_pred HHHHHHHhhhCCCCCCeecc-----CCChhHHHhccc-ccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHH
Q psy15223 1464 NIIISATEQSGRNILPVLAP-----NIYFNNWLISKI-SCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEE 1537 (2492)
Q Consensus 1464 ~i~~~a~~Q~~r~~~p~i~~-----~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~ 1537 (2492)
..+..|.+-......++..+ -.+|++++.... ....+++++.|...-.. +-+++.++++|--|||+++|.
T Consensus 86 gli~kaL~~~~~~~~~~~~pgi~v~~~sle~ll~e~~~~~~v~~L~E~G~~i~~~----~~~~~~~fvlGdH~~f~~e~~ 161 (197)
T 2qmm_A 86 GHIKKALAVECGKSWKKVHSGVYVSRKGLEELIEELSEKYSIIYLKEDGVDISNA----QLPPNPLFVIGDHEGLTEEQE 161 (197)
T ss_dssp HHHHHHHHSCCCSSCEEEETTEEEECCCHHHHHHHHHHHSEEEEEEEEEEEGGGS----CCCSSEEEEEECTTCCCHHHH
T ss_pred HHHHHHHHhccCcccCCCCCCEEEECCCHHHHHHHhhcCCcEEEEcCCCCCCchh----hcCCCCEEEEeCCCCCCHHHH
Confidence 66666666522222233322 248888887543 23477888877653221 113577899999999999999
Q ss_pred HHHHHcCCeEeecCCccceeeccchhh
Q psy15223 1538 NLAYECGVIILSLGKRILRTETASLVA 1564 (2492)
Q Consensus 1538 ~~~~~~gf~~vsLG~rILR~ETA~~~~ 1564 (2492)
+++.+.+...+|+||..|=|.+++...
T Consensus 162 ~~l~~~~~~~iSigp~~L~A~~vi~~v 188 (197)
T 2qmm_A 162 KVVERYAALKLSLSPLSLLAEQCVVIA 188 (197)
T ss_dssp HHHHTTCSEEEECCSSCCCHHHHHHHH
T ss_pred HHHHHhcCeEEEECCchhHHHHHHHHH
Confidence 999999999999999999888876554
No 180
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=92.54 E-value=0.066 Score=67.15 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=38.9
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCCceeeeccCC-ccCcchhhhccChhHHHHHHh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKGKKMSKSKGN-IIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G~KMSKS~GN-vi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
|-+|+.+.|.||.. +..+-.-++ +.... ...+.+.++.+.+|+|||||.|| .|+..|= ++.++=.+.
T Consensus 177 ~~a~~v~~G~DQ~~---~~~l~rdl~~r~~~~~--p~~l~~pll~gldG~KMSKS~~ns~I~L~d~-----p~~i~kKi~ 246 (372)
T 1n3l_A 177 LKVDAQFGGIDQRK---IFTFAEKYLPALGYSK--RVHLMNPMVPGLTGSKMSSSEEESKIDLLDR-----KEDVKKKLK 246 (372)
T ss_dssp TTCSEEEEEGGGHH---HHHHHHHHGGGGTCCC--CEEEEECCCCCSSCC-------CCSCBTTCC-----HHHHHHHHH
T ss_pred hcCCEEEcChhHHH---HHHHHHHHHHHcCCCC--CEEEecCccCCCCcccccCCCCCCeEeccCC-----HHHHHHHHH
Confidence 34689999999984 222222221 22223 34667889888999999999999 6887654 666776665
Q ss_pred c
Q psy15223 2197 S 2197 (2492)
Q Consensus 2197 s 2197 (2492)
+
T Consensus 247 ~ 247 (372)
T 1n3l_A 247 K 247 (372)
T ss_dssp T
T ss_pred H
Confidence 4
No 181
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=92.47 E-value=0.22 Score=55.96 Aligned_cols=102 Identities=18% Similarity=0.154 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhhCCCCcceecc-----CCchhHHHhhcc-cccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCH
Q psy15223 329 RWKNIIISATEQSGRNILPVLAP-----NIYFNNWLISKI-SCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTE 402 (2492)
Q Consensus 329 rw~~i~~ea~~Qs~r~~~p~i~~-----~~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~ 402 (2492)
|+-..+..|.+-......++..+ -.+|++++.... ....++++++|...... . -+.+..+++|--|||++
T Consensus 83 ~~~gli~kaL~~~~~~~~~~~~pgi~v~~~sle~ll~e~~~~~~v~~L~E~G~~i~~~-~---~~~~~~fvlGdH~~f~~ 158 (197)
T 2qmm_A 83 NVAGHIKKALAVECGKSWKKVHSGVYVSRKGLEELIEELSEKYSIIYLKEDGVDISNA-Q---LPPNPLFVIGDHEGLTE 158 (197)
T ss_dssp HHHHHHHHHHHSCCCSSCEEEETTEEEECCCHHHHHHHHHHHSEEEEEEEEEEEGGGS-C---CCSSEEEEEECTTCCCH
T ss_pred HHHHHHHHHHHhccCcccCCCCCCEEEECCCHHHHHHHhhcCCcEEEEcCCCCCCchh-h---cCCCCEEEEeCCCCCCH
Confidence 44445555554421222333333 357788876543 23477888887753221 1 13577899999999999
Q ss_pred HHHHHHHHcCceEeecCcceeeccccchhhee
Q psy15223 403 KEENLAYECGVIILSLGKRILRTETASLVALA 434 (2492)
Q Consensus 403 ~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~ 434 (2492)
+|.+.+...+...+|+||..|=|.++...+..
T Consensus 159 e~~~~l~~~~~~~iSigp~~L~A~~vi~~vh~ 190 (197)
T 2qmm_A 159 EQEKVVERYAALKLSLSPLSLLAEQCVVIAHH 190 (197)
T ss_dssp HHHHHHHTTCSEEEECCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCeEEEECCchhHHHHHHHHHHH
Confidence 99999999999999999999999998876543
No 182
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=92.37 E-value=0.16 Score=60.55 Aligned_cols=70 Identities=24% Similarity=0.299 Sum_probs=54.2
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccC--CCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhCC
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITR--NDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRL 138 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~--~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi 138 (2492)
.+.+|||++. .||+|+ +|.|-...+ -..+.|||..||-+|...... .+ ..+.+..-||-+|-.-|.+.+-
T Consensus 72 S~F~VGAAll~~dG~i~-~G~NvEna~as~~~t~CAEr~Ai~~Av~~G~~-~i---~~iav~~~PCG~CRQ~l~Ef~~ 144 (298)
T 4eg2_A 72 SEFYVGAIVRGISGRLY-LGANMEFTGAQLGQTVHAEQCAISHAWMKGEK-GV---ADITINFSPCGHCRQFMNELTT 144 (298)
T ss_dssp TCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCS-CE---EEEEESSCCCHHHHHHHTTBTT
T ss_pred CCCcEEEEEEECCCcEE-EEEcccccccccCccccHHHHHHHHHHhCCCC-ce---EEEEeecCCCHHHHHHHHHhcC
Confidence 4789999998 688866 899976432 234789999999999876432 33 3577789999999999998763
No 183
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=92.34 E-value=0.071 Score=66.87 Aligned_cols=70 Identities=23% Similarity=0.177 Sum_probs=38.3
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCC-ccCcchhhhhcChhhHHHHhhc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGN-IIKPQKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN-~i~p~~ii~~yGaD~lRl~l~s 1047 (2492)
|-+|+.+.|.||.. ++....-....+.... ...+++.++.+.+|+|||||.|| .|+..|= ++.++=.+.+
T Consensus 177 ~~a~~v~~G~DQ~~-~~~l~rdl~~r~~~~~--p~~l~~pll~gldG~KMSKS~~ns~I~L~d~-----p~~i~kKi~~ 247 (372)
T 1n3l_A 177 LKVDAQFGGIDQRK-IFTFAEKYLPALGYSK--RVHLMNPMVPGLTGSKMSSSEEESKIDLLDR-----KEDVKKKLKK 247 (372)
T ss_dssp TTCSEEEEEGGGHH-HHHHHHHHGGGGTCCC--CEEEEECCCCCSSCC-------CCSCBTTCC-----HHHHHHHHHT
T ss_pred hcCCEEEcChhHHH-HHHHHHHHHHHcCCCC--CEEEecCccCCCCcccccCCCCCCeEeccCC-----HHHHHHHHHH
Confidence 34789999999984 2221111111222223 34667889989999999999999 6877654 5666655554
No 184
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12
Probab=92.34 E-value=0.098 Score=62.68 Aligned_cols=52 Identities=50% Similarity=0.945 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 2 LDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 2 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
.+++++++++|+|++++|.+++++...+++++..+|.+|++.+||.||+.+.
T Consensus 161 ~~~~~~~~~~g~~~~~sg~~~~~~~~~~~~~~~~~~~drll~~TD~P~~~~~ 212 (265)
T 1yix_A 161 RETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPV 212 (265)
T ss_dssp HHHHHHHHTTTCEEEECGGGGSTTCHHHHHHHHHSCGGGEEECCCBTSCCCT
T ss_pred HHHHHHHHHCCcEEEECCccccCchHHHHHHHHhCChHHEEEecCCCCCCCc
Confidence 5788999999999999999999888889999999999999999999998664
No 185
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=92.19 E-value=0.086 Score=65.15 Aligned_cols=72 Identities=26% Similarity=0.303 Sum_probs=46.2
Q ss_pred cCceeeecccchhhhh-HHHHHHHHHH-hcC---CccccEEEE-eeeEEcCCCceeeeccCCccCcchhhhccChhHHHH
Q psy15223 2120 FPADLYLEGSDQHRGW-FHSSLLTSII-LNK---SAPYKALLT-HGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 2193 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~w-f~~~l~~~~~-l~~---~~pfk~v~~-hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~ 2193 (2492)
|-+|+...|.||.... +.+-+....- ..+ ..| ..+++ +.++.+.+|+|||||.||.|+..| .++.++=
T Consensus 152 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~~ 225 (340)
T 2g36_A 152 YKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEP-EAILSRVPKLPGTDGRKMSKSYGNIINLEI-----SEKELEQ 225 (340)
T ss_dssp TTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCC-EEEECCSCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHHH
T ss_pred hCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCc-hhhhccccccCCCCccccCCCCCCeEeeeC-----CHHHHHH
Confidence 4579999999998411 1122222221 113 122 23344 578888899999999999998877 6777777
Q ss_pred HHhc
Q psy15223 2194 WVAS 2197 (2492)
Q Consensus 2194 ~l~s 2197 (2492)
.+.+
T Consensus 226 Ki~~ 229 (340)
T 2g36_A 226 TILR 229 (340)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6664
No 186
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=92.15 E-value=0.077 Score=65.61 Aligned_cols=71 Identities=27% Similarity=0.317 Sum_probs=45.2
Q ss_pred cCeeeeecccccchhhHH--HHHHHHHH-hcC---CCCceEEEE-eeEEEcCCCccccccCCCccCcchhhhhcChhhHH
Q psy15223 970 FPADLYLEGSDQHRGWFH--SSLLTSII-LNK---SAPYKALLT-HGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 1042 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~--s~l~~~~~-~~~---~~p~k~v~~-hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lR 1042 (2492)
|-+|+...|.||.. ++. +-+..... ..| ..| ..+++ +.++.+.+|+|||||.||.|+..| .++.++
T Consensus 152 ~~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~ 224 (340)
T 2g36_A 152 YKAEGVPVGEDQVY-HIELTREIARRFNYLYDEVFPEP-EAILSRVPKLPGTDGRKMSKSYGNIINLEI-----SEKELE 224 (340)
T ss_dssp TTCSEEEECGGGHH-HHHHHHHHHHHHHHHSCCCCCCC-EEEECCSCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHH
T ss_pred hCCCEEEcccchHH-HHHHHHHHHHHhhhhcccccCCc-hhhhccccccCCCCccccCCCCCCeEeeeC-----CHHHHH
Confidence 45799999999984 222 11222211 113 122 33344 577888899999999999998877 566666
Q ss_pred HHhhc
Q psy15223 1043 LWVAS 1047 (2492)
Q Consensus 1043 l~l~s 1047 (2492)
=.+.+
T Consensus 225 ~Ki~~ 229 (340)
T 2g36_A 225 QTILR 229 (340)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 65554
No 187
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=92.00 E-value=0.083 Score=66.77 Aligned_cols=68 Identities=25% Similarity=0.208 Sum_probs=36.6
Q ss_pred cCceeeecccchhhhhHHHHHHHHH--HhcCCccccEEEEeeeEEcCC-CceeeeccCCc-cCcchhhhccChhHHHHHH
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSI--ILNKSAPYKALLTHGFVVDSK-GKKMSKSKGNI-IKPQKLCNLFGAEILRLWV 2195 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~--~l~~~~pfk~v~~hG~vld~~-G~KMSKS~GNv-i~p~~ii~~yGaD~lR~~l 2195 (2492)
|.+|+.+.|.||.. +..+-.-+ .+.... ...+.|.++.+.+ |+|||||.||. |+..|- ++.+|=-+
T Consensus 181 ~~~~~v~~G~DQ~~---~~~l~rdl~~r~~~~~--p~~l~~pll~gl~~G~KMSKS~~ns~I~L~D~-----p~~i~kKI 250 (394)
T 2dlc_X 181 LDVDCQFGGVDQRK---IFVLAEENLPSLGYKK--RAHLMNPMVPGLAQGGKMSASDPNSKIDLLEE-----PKQVKKKI 250 (394)
T ss_dssp TTCSEEEEEGGGHH---HHHHHHHHGGGGTCCC--CEEEEECCCCCCC----------CCSCBTTCC-----HHHHHHHH
T ss_pred hCCCEEecCccHHH---HHHHHHHHHHHcCCCC--CEEEecccccCCCCCCcCCCCCCCCEEeccCC-----HHHHHHHH
Confidence 45789999999984 22222222 222222 4567788888888 99999999996 887653 55666555
Q ss_pred hc
Q psy15223 2196 AS 2197 (2492)
Q Consensus 2196 ~s 2197 (2492)
.+
T Consensus 251 ~k 252 (394)
T 2dlc_X 251 NS 252 (394)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 188
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=91.68 E-value=0.097 Score=64.21 Aligned_cols=73 Identities=23% Similarity=0.211 Sum_probs=45.0
Q ss_pred cCceeeecccchhhhh-HHHHHHHHHHh-cCC-ccc-cEEE--EeeeEEcCCCceeeeccCCccCcchhhhccChhHHHH
Q psy15223 2120 FPADLYLEGSDQHRGW-FHSSLLTSIIL-NKS-APY-KALL--THGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 2193 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~w-f~~~l~~~~~l-~~~-~pf-k~v~--~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~ 2193 (2492)
|-+|+...|.||.... +.+-+....-. .+. -|- +.++ ++.++.+.+|+|||||.||.|+..| .++.++=
T Consensus 138 ~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d-----~p~~i~~ 212 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS-----SEKTLKK 212 (322)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC-----CHHHHHH
T ss_pred hCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC-----CHHHHHH
Confidence 4479999999998421 11222222211 121 111 2333 3678888899999999999998876 4666766
Q ss_pred HHhc
Q psy15223 2194 WVAS 2197 (2492)
Q Consensus 2194 ~l~s 2197 (2492)
.+.+
T Consensus 213 KI~~ 216 (322)
T 3tzl_A 213 QISS 216 (322)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6653
No 189
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=91.65 E-value=0.085 Score=64.71 Aligned_cols=71 Identities=23% Similarity=0.223 Sum_probs=43.4
Q ss_pred cCeeeeecccccchhhHH--HHHHHHHHh-cCC-CCc-eEEE--EeeEEEcCCCccccccCCCccCcchhhhhcChhhHH
Q psy15223 970 FPADLYLEGSDQHRGWFH--SSLLTSIIL-NKS-APY-KALL--THGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 1042 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~--s~l~~~~~~-~~~-~p~-k~v~--~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lR 1042 (2492)
|-+|+...|.||.. ++. +-+....-. .+. -|- +.++ ++.++.+.+|+|||||.||.|+..| .++.++
T Consensus 138 ~~~~~vpvG~DQ~~-hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d-----~p~~i~ 211 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQ-HVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS-----SEKTLK 211 (322)
T ss_dssp TTCSEEECCGGGHH-HHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC-----CHHHHH
T ss_pred hCCcEEEeccchHH-HHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC-----CHHHHH
Confidence 45799999999984 221 122222111 121 111 3343 3678888999999999999998765 355555
Q ss_pred HHhh
Q psy15223 1043 LWVA 1046 (2492)
Q Consensus 1043 l~l~ 1046 (2492)
=.+.
T Consensus 212 ~KI~ 215 (322)
T 3tzl_A 212 KQIS 215 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 190
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=91.63 E-value=0.09 Score=66.46 Aligned_cols=69 Identities=23% Similarity=0.178 Sum_probs=35.4
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCC-CccccccCCCc-cCcchhhhhcChhhHHHHhh
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSK-GKKMSKSKGNI-IKPQKLCNLFGAEILRLWVA 1046 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~-G~KMSKS~GN~-i~p~~ii~~yGaD~lRl~l~ 1046 (2492)
|.+|+.+.|.||.. ++....-....+... -...++|.++.+.+ |+|||||.||. |+..|= ++.+|=-+.
T Consensus 181 ~~~~~v~~G~DQ~~-~~~l~rdl~~r~~~~--~p~~l~~pll~gl~~G~KMSKS~~ns~I~L~D~-----p~~i~kKI~ 251 (394)
T 2dlc_X 181 LDVDCQFGGVDQRK-IFVLAEENLPSLGYK--KRAHLMNPMVPGLAQGGKMSASDPNSKIDLLEE-----PKQVKKKIN 251 (394)
T ss_dssp TTCSEEEEEGGGHH-HHHHHHHHGGGGTCC--CCEEEEECCCCCCC----------CCSCBTTCC-----HHHHHHHHH
T ss_pred hCCCEEecCccHHH-HHHHHHHHHHHcCCC--CCEEEecccccCCCCCCcCCCCCCCCEEeccCC-----HHHHHHHHH
Confidence 45789999999984 222222122222222 24566788888889 99999999996 877653 444554444
No 191
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=91.49 E-value=0.14 Score=61.28 Aligned_cols=52 Identities=46% Similarity=0.773 Sum_probs=47.2
Q ss_pred HHHHHHHHH-cCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 2 LDVAREIIE-LGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 2 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
.++++++++ .|+|++++|.+++.++..+++++...|.+|++.+||.||+.+.
T Consensus 159 ~~~~~~~l~~~~~y~~~sg~~~~~~~~~~~~~i~~~~~dril~gSD~P~~~~~ 211 (265)
T 2gzx_A 159 PEIADIVTNKLNFYISLGGPVTFKNAKQPKEVAKHVSMERLLVETDAPYLSPH 211 (265)
T ss_dssp HHHHHHHHHTSCCEEEECGGGGCSSCCHHHHHHHHSCTTTEEECCCTTSCCCT
T ss_pred HHHHHHHHHHCCceEEecceeecCCcHHHHHHHHhCChhhEEEccCCCCCCCc
Confidence 578889999 8999999999998877789999999999999999999998764
No 192
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=90.42 E-value=0.17 Score=62.46 Aligned_cols=72 Identities=26% Similarity=0.213 Sum_probs=43.5
Q ss_pred cCeeeeecccccchhhHHHH--HHHHHH-hcCC-CCceEEEEe---eEEEcCCC-ccccccCCCccCcchhhhhcChhhH
Q psy15223 970 FPADLYLEGSDQHRGWFHSS--LLTSII-LNKS-APYKALLTH---GFVVDSKG-KKMSKSKGNIIKPQKLCNLFGAEIL 1041 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~--l~~~~~-~~~~-~p~k~v~~h---G~vld~~G-~KMSKS~GN~i~p~~ii~~yGaD~l 1041 (2492)
|-+|+...|.||.. ++... +....- ..|. .+-...+++ .++.+.+| +|||||.||.|+..|= ++.+
T Consensus 140 ~~~~lvp~G~DQ~~-~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d~-----p~~i 213 (337)
T 2el7_A 140 YKADTVPVGEDQVQ-HIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLEP-----EESI 213 (337)
T ss_dssp TTCCEEECCGGGCH-HHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSSC-----HHHH
T ss_pred hCCcEEEcccchHH-HHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCCeeeCcCC-----HHHH
Confidence 45899999999984 22211 111110 1131 111233333 58888899 9999999999987763 5566
Q ss_pred HHHhhc
Q psy15223 1042 RLWVAS 1047 (2492)
Q Consensus 1042 Rl~l~s 1047 (2492)
+=.+.+
T Consensus 214 ~~Ki~~ 219 (337)
T 2el7_A 214 WQKIQH 219 (337)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 655554
No 193
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=90.38 E-value=0.15 Score=62.54 Aligned_cols=64 Identities=23% Similarity=0.275 Sum_probs=43.3
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCC-ceeeeccCCccCcchhhhccChhHHHHHHh
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG-KKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G-~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
-+|+.+.|.||.. +..+..-+ .. |-..++.+.++.+.+| +|||||.||.|+..|- +|.+|==+.
T Consensus 163 ~~~~v~~G~DQ~~---~~~l~R~i--~~--~~~~~~~~~~l~~l~G~~KMSKS~~~~I~L~d~-----~~~i~~KI~ 227 (314)
T 2zp1_A 163 GVDVAVGGMEQRK---IHMLAREL--LP--KKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDDS-----PEEIRAKIK 227 (314)
T ss_dssp TCSEEEEEGGGHH---HHHHHHHH--SS--SCCEEEEECCCBCTTSSSBCCTTTTCSCBTTCC-----HHHHHHHHH
T ss_pred CCCEEEcChhHHH---HHHHHHHh--cC--CCcEEeeccccccCCcccccCCCCcceecCCCC-----HHHHHHHHH
Confidence 3689999999985 22333222 22 2234577788888899 7999999999987653 455554444
No 194
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=90.33 E-value=0.19 Score=62.10 Aligned_cols=73 Identities=26% Similarity=0.204 Sum_probs=44.4
Q ss_pred cCceeeecccchhhhh-HHHHHHHHHH-hcCC-ccccEEEEe---eeEEcCCC-ceeeeccCCccCcchhhhccChhHHH
Q psy15223 2120 FPADLYLEGSDQHRGW-FHSSLLTSII-LNKS-APYKALLTH---GFVVDSKG-KKMSKSKGNIIKPQKLCNLFGAEILR 2192 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~w-f~~~l~~~~~-l~~~-~pfk~v~~h---G~vld~~G-~KMSKS~GNvi~p~~ii~~yGaD~lR 2192 (2492)
|-+|+...|.||.... +.+-+....- ..|. .+-+..+++ .++.+.+| +|||||.||.|+..|- ++.++
T Consensus 140 ~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d~-----p~~i~ 214 (337)
T 2el7_A 140 YKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLEP-----EESIW 214 (337)
T ss_dssp TTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSSC-----HHHHH
T ss_pred hCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCCeeeCcCC-----HHHHH
Confidence 4579999999998411 1111121111 1131 111233333 58888899 9999999999988763 66777
Q ss_pred HHHhc
Q psy15223 2193 LWVAS 2197 (2492)
Q Consensus 2193 ~~l~s 2197 (2492)
=.+.+
T Consensus 215 ~Ki~~ 219 (337)
T 2el7_A 215 QKIQH 219 (337)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66654
No 195
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=90.14 E-value=0.42 Score=53.31 Aligned_cols=103 Identities=15% Similarity=0.219 Sum_probs=65.0
Q ss_pred CCcHHHHHHHHHHHh-ccCcccCCCeEEEEcCCChHhHHHHHHHh-----CCceEEEecCCCCC-CccchhhhHHhhcCC
Q psy15223 93 TAHAEIIALRMASKL-LNNYRFSKNYKIYVTLEPCAMCAGAIIHV-----RLGEIIYGTPSFKT-GACGSIINLFQEKKL 165 (2492)
Q Consensus 93 ~~HaE~~ai~~a~~~-~~~~~l~~~~~ly~t~EPC~mC~~ai~~~-----gi~rvv~g~~~~~~-~~~g~~~~~~~~~~~ 165 (2492)
..|||+.-|.+.... +.+..-. .-|-|+|..||+-||..|+.. ++.=.+|.+.--.. ...-.|...|.++|+
T Consensus 78 ~~HAEl~FL~~~~~~~Ld~~~~Y-~vTwy~SWSPC~~CA~~v~~FL~~~~~v~L~If~aRLY~~~~~~~~gLr~L~~aG~ 156 (203)
T 3v4k_A 78 GRHAELCFLDVIPFWKLDLDQDY-RVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTARIYDDQGRCQEGLRTLAEAGA 156 (203)
T ss_pred CCcHHHHHHHHhhhccCCCCCeE-EEEEEEeCCChHHHHHHHHHHHhhCCCeEEEEEEEeecccCchHHHHHHHHHHCCC
Confidence 579999999988753 3221111 367899999999999999885 34434444331111 112346788888887
Q ss_pred CceeEEeccccHHHHHHHHHHHHHh-ccCcccccccc
Q psy15223 166 NHHTILTGGVMQKQCEKLLKSFFIK-RRNFVKNKSIN 201 (2492)
Q Consensus 166 ~~~~~v~~gv~~~e~~~l~~~~~~~-~~~~~~~~~a~ 201 (2492)
...+ . --.|=.--...|... .+||.+.+...
T Consensus 157 ~v~i--M---~~~ef~~CW~~FV~nqg~pF~PW~~L~ 188 (203)
T 3v4k_A 157 KISI--M---TYSEFKHCWDTFVDHQGAPFQPWDGLD 188 (203)
T ss_pred eEEe--c---CHHHHHHHHHHHccCCCCCCCchhHHH
Confidence 6433 1 234555566777754 57888776655
No 196
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=90.11 E-value=0.16 Score=62.31 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=38.8
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCC-ccccccCCCccCcchh
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG-KKMSKSKGNIIKPQKL 1032 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G-~KMSKS~GN~i~p~~i 1032 (2492)
-+|+.+.|.||.. +..+..-+ .. |-..++++.++.+.+| +|||||.||.|+..|=
T Consensus 163 ~~~~v~~G~DQ~~---~~~l~R~i--~~--~~~~~~~~~~l~~l~G~~KMSKS~~~~I~L~d~ 218 (314)
T 2zp1_A 163 GVDVAVGGMEQRK---IHMLAREL--LP--KKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDDS 218 (314)
T ss_dssp TCSEEEEEGGGHH---HHHHHHHH--SS--SCCEEEEECCCBCTTSSSBCCTTTTCSCBTTCC
T ss_pred CCCEEEcChhHHH---HHHHHHHh--cC--CCcEEeeccccccCCcccccCCCCcceecCCCC
Confidence 4789999999984 22332222 22 2234577888889999 7999999999987653
No 197
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=89.62 E-value=0.36 Score=57.53 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=53.5
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccC-cccCCCeEEEEc----CCChHhHHHHHHHhC
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNN-YRFSKNYKIYVT----LEPCAMCAGAIIHVR 137 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~-~~l~~~~~ly~t----~EPC~mC~~ai~~~g 137 (2492)
.+.+|||+|. +||+|. +|.|-.....+++..||..||-++...+.. ..+. ...+... .-||.+|-..|...+
T Consensus 211 S~~~vGAAl~t~dG~iy-tG~nvEnAay~~slcAEr~Al~~av~~G~~~~~i~-aiv~v~~~~~~~sPCG~CRqvL~e~~ 288 (298)
T 4eg2_A 211 TQNFSGVALKMRSGAIY-LGAYAENAAFNPSLPPLQVALAQAMMMGESFEDIE-AAALVESATGKISHLADTQATLEVIN 288 (298)
T ss_dssp TCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEE-EEEEEECTTCSSCCHHHHHHHHHHHC
T ss_pred cCCCeEEEEEeCCCCEE-EEEeeeccccCCCCCHHHHHHHHHHHCCCCccCeE-EEEEEeCCCCCcCCcHHHHHHHHHhC
Confidence 3679999999 688866 899988888899999999999999876432 1232 2333322 248999999998875
No 198
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=89.58 E-value=0.12 Score=64.15 Aligned_cols=70 Identities=30% Similarity=0.307 Sum_probs=42.2
Q ss_pred cCeeeeecccccchhhHHHH--HHHHHH-hcC---CCCceEEEE-eeEEEcCCCc-cccccCCCccCcchhhhhcChhhH
Q psy15223 970 FPADLYLEGSDQHRGWFHSS--LLTSII-LNK---SAPYKALLT-HGFVVDSKGK-KMSKSKGNIIKPQKLCNLFGAEIL 1041 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~--l~~~~~-~~~---~~p~k~v~~-hG~vld~~G~-KMSKS~GN~i~p~~ii~~yGaD~l 1041 (2492)
|-+|+...|.||.. ++... +....- ..| ..| ..+++ +.++.+.+|+ |||||.||.|+..|= ++.+
T Consensus 161 ~~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~-----p~~i 233 (351)
T 1yi8_B 161 FGATLVPVGDDQLP-MLEQTREIVRRFNALYAPVLAEP-QAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS-----ADEV 233 (351)
T ss_dssp HTCSEEEECGGGHH-HHHHHHHHHHHHHHHTCSCSCCC-EEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC-----HHHH
T ss_pred cCCCEEEecCCcHH-HHHHHHHHHHHHHhhcccccCCC-eeeeecCccccCCCCccccCCCCCCeecCCCC-----HHHH
Confidence 35799999999984 22211 111111 123 122 34454 5678888997 999999998876653 4445
Q ss_pred HHHhh
Q psy15223 1042 RLWVA 1046 (2492)
Q Consensus 1042 Rl~l~ 1046 (2492)
+=.+.
T Consensus 234 ~~Ki~ 238 (351)
T 1yi8_B 234 ARKVM 238 (351)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 199
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=89.53 E-value=0.19 Score=62.79 Aligned_cols=59 Identities=29% Similarity=0.339 Sum_probs=37.7
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCce-EEEEeeEEEcC-CCc-cccccC-CCccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYK-ALLTHGFVVDS-KGK-KMSKSK-GNIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k-~v~~hG~vld~-~G~-KMSKS~-GN~i~p~~ 1031 (2492)
+-+|+.+.|.||-. |-.+..-++-.-...|+ .++++.++.+. +|. |||||. +|.|+..|
T Consensus 199 l~ad~vpgG~DQ~~---~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D 261 (373)
T 3vgj_A 199 LNVDICQLGIDQRK---VNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDD 261 (373)
T ss_dssp TTCSEECCBGGGHH---HHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC
T ss_pred cCCcEEEcchhhHH---HHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCeeecCC
Confidence 34789999999984 33333222221112232 46778888885 885 999999 57887653
No 200
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=89.46 E-value=0.13 Score=63.81 Aligned_cols=72 Identities=29% Similarity=0.253 Sum_probs=43.7
Q ss_pred cCceeeecccchhhhh-HHHHHHHHHH-hcC---CccccEEEE-eeeEEcCCCc-eeeeccCCccCcchhhhccChhHHH
Q psy15223 2120 FPADLYLEGSDQHRGW-FHSSLLTSII-LNK---SAPYKALLT-HGFVVDSKGK-KMSKSKGNIIKPQKLCNLFGAEILR 2192 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~w-f~~~l~~~~~-l~~---~~pfk~v~~-hG~vld~~G~-KMSKS~GNvi~p~~ii~~yGaD~lR 2192 (2492)
|-+|+...|.||.... +.+-+....- ..| ..| ..+++ +.++.+.+|+ |||||.||.|+..|= ++.++
T Consensus 161 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~-----p~~i~ 234 (351)
T 1yi8_B 161 FGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEP-QAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS-----ADEVA 234 (351)
T ss_dssp HTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCC-EEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC-----HHHHH
T ss_pred cCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCC-eeeeecCccccCCCCccccCCCCCCeecCCCC-----HHHHH
Confidence 3479999999998411 1111121111 123 122 33444 5688888997 999999998887654 66666
Q ss_pred HHHhc
Q psy15223 2193 LWVAS 2197 (2492)
Q Consensus 2193 ~~l~s 2197 (2492)
=.+.+
T Consensus 235 ~Ki~~ 239 (351)
T 1yi8_B 235 RKVMG 239 (351)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55553
No 201
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=89.30 E-value=0.21 Score=62.48 Aligned_cols=68 Identities=25% Similarity=0.274 Sum_probs=41.9
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHh-cCCcccc-EEEEeeeEEcC-CCc-eeeecc-CCccCcchhhhccChhHHHHH
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYK-ALLTHGFVVDS-KGK-KMSKSK-GNIIKPQKLCNLFGAEILRLW 2194 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l-~~~~pfk-~v~~hG~vld~-~G~-KMSKS~-GNvi~p~~ii~~yGaD~lR~~ 2194 (2492)
+-+|+..+|.||.. |-.+..-++- ++. .|+ .++++.++.+. +|. |||||. +|.|+..|- ++.+|==
T Consensus 199 l~ad~vpgG~DQ~~---~l~l~Rdla~r~~~-~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D~-----p~~i~~K 269 (373)
T 3vgj_A 199 LNVDICQLGIDQRK---VNMLAREYCDIKKI-KKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDS-----ESDVNRK 269 (373)
T ss_dssp TTCSEECCBGGGHH---HHHHHHHHHHHHTC-SCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTCC-----HHHHHHH
T ss_pred cCCcEEEcchhhHH---HHHHHHHHHHHhCC-CCCceEEeCCeeecCCCCCCCCcCCCCCCeeecCCC-----HHHHHHH
Confidence 34789999999984 3333322221 122 222 46778888885 885 999999 578876543 4455544
Q ss_pred Hh
Q psy15223 2195 VA 2196 (2492)
Q Consensus 2195 l~ 2196 (2492)
+.
T Consensus 270 I~ 271 (373)
T 3vgj_A 270 IK 271 (373)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 202
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=88.56 E-value=0.18 Score=63.21 Aligned_cols=64 Identities=23% Similarity=0.240 Sum_probs=32.2
Q ss_pred ceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCC--ceeeeccCCccCcchhhhccChhHHHHHH
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKG--KKMSKSKGNIIKPQKLCNLFGAEILRLWV 2195 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G--~KMSKS~GNvi~p~~ii~~yGaD~lR~~l 2195 (2492)
+|+..+|.||-. |-.+..-++ +....| .++.+.++.+.+| .|||||.||.|+..| .++.++==+
T Consensus 225 ~~lvp~G~DQ~~---~i~l~Rdla~r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D-----~p~~i~kKI 292 (395)
T 3i05_A 225 FCLIPQAIDQDP---YFRLTRDIAPRLGYLKP--AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD-----TEKMVKDKI 292 (395)
T ss_dssp EEEEEEEGGGHH---HHHHHHHTHHHHTCCCC--EEEEECCCCCC-------------CCBTTC-----CHHHHHHHH
T ss_pred ceEEEeccchHH---HHHHHHHHHHHcCCCCc--eeeccccccCCCCCcccCCCCCCCcccCCC-----CHHHHHHHH
Confidence 789999999984 222222222 233333 4677888888899 799999999998765 345555333
No 203
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=88.24 E-value=0.22 Score=63.37 Aligned_cols=57 Identities=28% Similarity=0.223 Sum_probs=33.8
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCC--ceeeeccCC-ccCcch
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQK 2181 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p~~ 2181 (2492)
|-+++...|.||.. |-.+..-++ +....| .++++.++...+| +|||||.|| .|++.|
T Consensus 248 ~~~~lvp~G~DQ~~---~i~l~Rdla~r~~~~~p--~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 248 KTPCLIPCAIDQDP---YFRVCRDVADKLKYSKP--ALLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp TCCEEEEEEGGGHH---HHHHHHHHHHHHTSCCC--EEEEECCCCCTTC--------CGGGCCBTTC
T ss_pred CCceEEEeccCcHH---HHHHHHHHHHHhCCCCc--eeeccccccCCCCCccccCCCCCCCeEeccC
Confidence 45788999999984 222222222 222344 3577889889999 999999999 787765
No 204
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=88.22 E-value=0.19 Score=63.05 Aligned_cols=55 Identities=27% Similarity=0.253 Sum_probs=27.9
Q ss_pred eeeeecccccchhhHHHHHHHHH--HhcCCCCceEEEEeeEEEcCCC--ccccccCCCccCcch
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSI--ILNKSAPYKALLTHGFVVDSKG--KKMSKSKGNIIKPQK 1031 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~--~~~~~~p~k~v~~hG~vld~~G--~KMSKS~GN~i~p~~ 1031 (2492)
+|+...|.||-. +-.+..-+ -+....| .++++.++...+| .|||||.||.|+..|
T Consensus 225 ~~lvp~G~DQ~~---~i~l~Rdla~r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 225 FCLIPQAIDQDP---YFRLTRDIAPRLGYLKP--AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEEEEGGGHH---HHHHHHHTHHHHTCCCC--EEEEECCCCCC-------------CCBTTC
T ss_pred ceEEEeccchHH---HHHHHHHHHHHcCCCCc--eeeccccccCCCCCcccCCCCCCCcccCCC
Confidence 789999999984 22222222 2233333 4677888888899 799999999997655
No 205
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=88.11 E-value=0.22 Score=63.30 Aligned_cols=57 Identities=28% Similarity=0.216 Sum_probs=34.0
Q ss_pred cCeeeeecccccchhhHHHHHHHHH--HhcCCCCceEEEEeeEEEcCCC--ccccccCCC-ccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSI--ILNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~--~~~~~~p~k~v~~hG~vld~~G--~KMSKS~GN-~i~p~~ 1031 (2492)
|-+++...|.||-. |-.+..-+ -+....| .++++.++...+| +|||||.|| .|+..|
T Consensus 248 ~~~~lvp~G~DQ~~---~i~l~Rdla~r~~~~~p--~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 248 KTPCLIPCAIDQDP---YFRVCRDVADKLKYSKP--ALLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp TCCEEEEEEGGGHH---HHHHHHHHHHHHTSCCC--EEEEECCCCCTTC--------CGGGCCBTTC
T ss_pred CCceEEEeccCcHH---HHHHHHHHHHHhCCCCc--eeeccccccCCCCCccccCCCCCCCeEeccC
Confidence 55889999999984 22222222 2222345 3578889999999 999999999 787655
No 206
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=87.89 E-value=0.26 Score=61.69 Aligned_cols=57 Identities=25% Similarity=0.075 Sum_probs=37.7
Q ss_pred ceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCC--ceeeeccCC-ccCcch
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQK 2181 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p~~ 2181 (2492)
+|+...|.||.. |-.+..-++-.-.-+-...+.+.++.+.+| .|||||.+| .|...|
T Consensus 208 a~~vpvG~DQ~~---hl~l~Rdla~r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D 267 (392)
T 3jxe_A 208 RCLIPAAIDQDP---YWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTD 267 (392)
T ss_dssp CEEEEEEGGGHH---HHHHHHHHTGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTC
T ss_pred CceeecccchHH---HHHHHHHHHHHcCCCCCeeeecccccCCCCCccccccCCCCCeeeCCC
Confidence 688899999984 333333333211112234667888888888 699999998 876543
No 207
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=87.86 E-value=0.27 Score=61.53 Aligned_cols=56 Identities=25% Similarity=0.073 Sum_probs=37.4
Q ss_pred eeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCC--ccccccCCC-ccCcc
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQ 1030 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G--~KMSKS~GN-~i~p~ 1030 (2492)
+|+...|.||.. |-.+..-++-.-+-+-...+++.++...+| .|||||.+| .|...
T Consensus 208 a~~vpvG~DQ~~---hl~l~Rdla~r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~ 266 (392)
T 3jxe_A 208 RCLIPAAIDQDP---YWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLT 266 (392)
T ss_dssp CEEEEEEGGGHH---HHHHHHHHTGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTT
T ss_pred CceeecccchHH---HHHHHHHHHHHcCCCCCeeeecccccCCCCCccccccCCCCCeeeCC
Confidence 788899999983 333333333221112234667888888888 599999999 88654
No 208
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=87.83 E-value=0.47 Score=53.71 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=58.1
Q ss_pred CChhHHHhccc-cc-ceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccch
Q psy15223 1485 IYFNNWLISKI-SC-ARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASL 1562 (2492)
Q Consensus 1485 ~~~~~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~ 1562 (2492)
.+|++.+.... .. ..+++++.|...-.. . . .+.++++|--|||+++|.+.|.+.+...+|+||..|=|.+++.
T Consensus 123 ~sle~ll~e~~~~~~~v~~L~E~G~~i~~~-~-~---~~~~fvlGdH~~f~~e~~~~L~~~~~~~iSigp~~L~A~hvi~ 197 (211)
T 3aia_A 123 LGFRNLVLEKLEEGKNIYYLHMNGEDVENV-D-I---ENPVFIIGDHIGIGEEDERFLDEIKAKRISLSPLELHANHCIT 197 (211)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEEEEEGGGC-C-C---CSEEEEEECSSCSCHHHHHHHHHTTCEEEECCSSCCCHHHHHH
T ss_pred CCHHHHHHHHhhcCCcEEEEcCCCCCCccc-c-c---CCcEEEEECCCCCCHHHHHHHHhhCCeEEEECCcchHHHHHHH
Confidence 68888877532 23 467888877653221 1 1 4678999999999999999999999999999999998888765
Q ss_pred hhh
Q psy15223 1563 VAL 1565 (2492)
Q Consensus 1563 ~~~ 1565 (2492)
.+-
T Consensus 198 ~vh 200 (211)
T 3aia_A 198 IIH 200 (211)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 209
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=87.75 E-value=0.3 Score=60.95 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=43.7
Q ss_pred cCeeeeecccccchhhHHHHHHHHHH--hcCCCCceEEEEeeEEEcCC-----------------Ccccccc-CCCccCc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSK-----------------GKKMSKS-KGNIIKP 1029 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~--~~~~~p~k~v~~hG~vld~~-----------------G~KMSKS-~GN~i~p 1029 (2492)
|-+|+.+.|.||.. |-.+..-++ +....| .+++|.++.+.+ |+||||| .+|.|+.
T Consensus 176 ~~~~~v~~G~DQ~~---~~~l~rdla~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L 250 (364)
T 2cya_A 176 MDLDIALGGMDQRK---AHMLARDVAEKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFV 250 (364)
T ss_dssp TTCSEEEEEGGGHH---HHHHHHHHHTTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSGGGSCBT
T ss_pred cCCCEEeccchHHH---HHHHHHHHHHHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCCCCEeec
Confidence 34789999999984 333332222 222333 357788888887 7999999 7899987
Q ss_pred chhhhhcChhhHHHHhhc
Q psy15223 1030 QKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 1030 ~~ii~~yGaD~lRl~l~s 1047 (2492)
.|= ++.++=.+.+
T Consensus 251 ~d~-----p~~i~~Ki~~ 263 (364)
T 2cya_A 251 VDS-----DDDIRRKIRK 263 (364)
T ss_dssp TCC-----HHHHHHHHHT
T ss_pred cCC-----HHHHHHHHHh
Confidence 654 5555555543
No 210
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=87.75 E-value=0.28 Score=60.86 Aligned_cols=58 Identities=24% Similarity=0.222 Sum_probs=38.2
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcC-CC-ccccccC-CCccCcch
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDS-KG-KKMSKSK-GNIIKPQK 1031 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~-~G-~KMSKS~-GN~i~p~~ 1031 (2492)
-+|+.+.|.||.. |-.+..-++-.-...+..++.+.++... +| .|||||. ||.|+..|
T Consensus 186 ~~~~~~~G~DQ~~---~i~l~Rdia~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d 246 (348)
T 2j5b_A 186 GIDICQLGIDQRK---VNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD 246 (348)
T ss_dssp CCSEECCBGGGHH---HHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC
T ss_pred CCcEEEeccChHH---HHHHHHHHHHHhCCCCceeecCccccCCCCcccccccCCCCCeEeecC
Confidence 4789999999984 2233333332222333456777888877 56 7999999 58887654
No 211
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=87.58 E-value=0.3 Score=60.59 Aligned_cols=58 Identities=24% Similarity=0.222 Sum_probs=37.7
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcC-CC-ceeeecc-CCccCcch
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDS-KG-KKMSKSK-GNIIKPQK 2181 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~-~G-~KMSKS~-GNvi~p~~ 2181 (2492)
-+|+..+|.||.. |-.+..-++-.-...+..++.+.++.+. +| .|||||. ||.|+..|
T Consensus 186 ~~~~~~~G~DQ~~---~i~l~Rdia~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d 246 (348)
T 2j5b_A 186 GIDICQLGIDQRK---VNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD 246 (348)
T ss_dssp CCSEECCBGGGHH---HHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC
T ss_pred CCcEEEeccChHH---HHHHHHHHHHHhCCCCceeecCccccCCCCcccccccCCCCCeEeecC
Confidence 3689999999984 2233333332222233456777788877 56 7999999 58887654
No 212
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=87.58 E-value=0.32 Score=60.77 Aligned_cols=67 Identities=21% Similarity=0.256 Sum_probs=44.3
Q ss_pred CceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCC-----------------Cceeeec-cCCccCcc
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSK-----------------GKKMSKS-KGNIIKPQ 2180 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~-----------------G~KMSKS-~GNvi~p~ 2180 (2492)
-+|+.+.|.||.. |-.+..-++ +....| .++.+.++.+.+ |+||||| .+|.|+..
T Consensus 177 ~~~~v~~G~DQ~~---~~~l~rdla~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~ 251 (364)
T 2cya_A 177 DLDIALGGMDQRK---AHMLARDVAEKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVV 251 (364)
T ss_dssp TCSEEEEEGGGHH---HHHHHHHHHTTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSGGGSCBTT
T ss_pred CCCEEeccchHHH---HHHHHHHHHHHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCCCCEeecc
Confidence 4789999999984 333332222 222333 357778888777 7999999 78999877
Q ss_pred hhhhccChhHHHHHHhc
Q psy15223 2181 KLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2181 ~ii~~yGaD~lR~~l~s 2197 (2492)
|- ++.++=.+.+
T Consensus 252 d~-----p~~i~~Ki~~ 263 (364)
T 2cya_A 252 DS-----DDDIRRKIRK 263 (364)
T ss_dssp CC-----HHHHHHHHHT
T ss_pred CC-----HHHHHHHHHh
Confidence 64 6666666654
No 213
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=87.53 E-value=0.48 Score=53.66 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=59.8
Q ss_pred CCchhHHHhhcc-cc-cEEEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccc
Q psy15223 352 NIYFNNWLISKI-SC-ARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETAS 429 (2492)
Q Consensus 352 ~~~~~~~l~~~~-~~-~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~ 429 (2492)
-.+|++++.... .. ..++++++|...... . - .+..+++|--|||+++|.+.+...+...+|+||..|=|.++.
T Consensus 122 ~~sle~ll~e~~~~~~~v~~L~E~G~~i~~~-~---~-~~~~fvlGdH~~f~~e~~~~L~~~~~~~iSigp~~L~A~hvi 196 (211)
T 3aia_A 122 RLGFRNLVLEKLEEGKNIYYLHMNGEDVENV-D---I-ENPVFIIGDHIGIGEEDERFLDEIKAKRISLSPLELHANHCI 196 (211)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEEEEEEEGGGC-C---C-CSEEEEEECSSCSCHHHHHHHHHTTCEEEECCSSCCCHHHHH
T ss_pred cCCHHHHHHHHhhcCCcEEEEcCCCCCCccc-c---c-CCcEEEEECCCCCCHHHHHHHHhhCCeEEEECCcchHHHHHH
Confidence 367777776532 23 477888887653221 1 1 467899999999999999999999999999999999999998
Q ss_pred hhheeee
Q psy15223 430 LVALAIL 436 (2492)
Q Consensus 430 ~~~~~~v 436 (2492)
..+...+
T Consensus 197 ~~vh~~L 203 (211)
T 3aia_A 197 TIIHNVL 203 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7665443
No 214
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=86.55 E-value=0.33 Score=61.02 Aligned_cols=57 Identities=23% Similarity=0.165 Sum_probs=38.4
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCC--ceeeecc-CCccCcch
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKG--KKMSKSK-GNIIKPQK 2181 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G--~KMSKS~-GNvi~p~~ 2181 (2492)
|-+|+...|.||.. |-.+..-++ +.... ..++.+.++.+.+| .|||||. +|.|+..|
T Consensus 242 ~~a~lvpvG~DQ~~---~i~l~Rdla~r~~~~~--p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 242 GAMCLVPAAVDQDP---FFRLARDKAKALGEKK--PSSIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp TCEEEEEEEGGGHH---HHHHHHHHHHHHTCCC--CEEEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred CCCeEEeeccchHH---HHHHHHHHHHHcCCCC--ceeeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 45788999999984 222222222 22223 34667888888899 6999999 68887654
No 215
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=86.47 E-value=0.42 Score=60.67 Aligned_cols=57 Identities=26% Similarity=0.188 Sum_probs=38.7
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCC--ceeeeccCC-ccCcch
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQK 2181 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p~~ 2181 (2492)
|-+++...|.||.. |-.+..-++ +....| .++++.++.+.+| .|||||.|| .|+..|
T Consensus 255 ~~~~lVpvG~DQ~~---~i~l~Rdla~r~~~~~P--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 255 DIQCLIPCAIDQDP---YFRMTRDVAPRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp CCEEEEEEEGGGHH---HHHHHHHHGGGGTCCCC--EEEEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred CCceEEEeehhhHH---HHHHHHHHHHHhCCCCc--eEeecccccCCCCCccccCCCCCCCeeeccC
Confidence 34566668999984 333333332 222334 4578889999999 899999999 788765
No 216
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=86.37 E-value=0.35 Score=60.64 Aligned_cols=56 Identities=20% Similarity=0.096 Sum_probs=26.0
Q ss_pred eeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCC--ceeeeccCC-ccCcch
Q psy15223 2123 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQK 2181 (2492)
Q Consensus 2123 Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p~~ 2181 (2492)
++..+|.||.. |-.+..-++-.-..|-..++.+.++.+.+| .|||||.+| .|+..|
T Consensus 222 ~lvp~G~DQ~~---~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 222 CLVPHAIDQDP---YFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp EEEEEEGGGHH---HHHHHHHHTGGGTCCCCEEEEECCCCC-------------CCCCBTTC
T ss_pred eecccccchHH---HHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEeccC
Confidence 45689999984 233333222211222234678888888899 799999998 787654
No 217
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=86.31 E-value=0.36 Score=60.66 Aligned_cols=59 Identities=20% Similarity=0.091 Sum_probs=38.4
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCC--ccccccC-CCccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG--KKMSKSK-GNIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G--~KMSKS~-GN~i~p~~ 1031 (2492)
+-+|+...|.||-. |-.+..-++-.-..|-..++++.++...+| .|||||. +|.|+..|
T Consensus 242 ~~a~lvpvG~DQ~~---~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 242 GAMCLVPAAVDQDP---FFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp TCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred CCCeEEeeccchHH---HHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 45789999999984 222222222111122234567888888899 6999999 68887654
No 218
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=86.25 E-value=0.43 Score=60.55 Aligned_cols=57 Identities=26% Similarity=0.159 Sum_probs=38.7
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHh--cCCCCceEEEEeeEEEcCCC--ccccccCCC-ccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIIL--NKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~--~~~~p~k~v~~hG~vld~~G--~KMSKS~GN-~i~p~~ 1031 (2492)
|-+++...|.||.. |-.+..-++- ....| .++++.++...+| .|||||.|| .|+..|
T Consensus 255 ~~~~lVpvG~DQ~~---~i~l~Rdla~r~~~~~P--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 255 DIQCLIPCAIDQDP---YFRMTRDVAPRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp CCEEEEEEEGGGHH---HHHHHHHHGGGGTCCCC--EEEEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred CCceEEEeehhhHH---HHHHHHHHHHHhCCCCc--eEeecccccCCCCCccccCCCCCCCeeeccC
Confidence 44667778999983 3333332222 22334 4578899999999 899999999 787654
No 219
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=85.42 E-value=0.51 Score=58.98 Aligned_cols=55 Identities=25% Similarity=0.258 Sum_probs=37.7
Q ss_pred eeeeecccccchhhHHHHHHHHHH--hcCCCCceEEEEeeEEEcCCCc-ccccc-CCCccCcch
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKGK-KMSKS-KGNIIKPQK 1031 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~~--~~~~~p~k~v~~hG~vld~~G~-KMSKS-~GN~i~p~~ 1031 (2492)
+++...|.||.. |-.+..-++ +....| .++.+.++...+|. ||||| .||.|...|
T Consensus 225 a~~VpvG~DQ~~---hl~l~Rdla~r~n~~~p--~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D 283 (386)
T 3hzr_A 225 RCLVLDSIKNVQ---FHSIIDQIATTLNFIQP--TVLFHKMVPLLSGVTKFDIPSDHNSILLSD 283 (386)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHHHTCCCC--EEEEECCCCCTTCTTCCCCCCTTTSCBTTC
T ss_pred ccccccccchHH---HHHHHHHHHHHcCCCCc--eEeecCeeeCCCCCCccCcCCCCCeeecCC
Confidence 666667999984 333332222 233444 66788888888995 99999 899997654
No 220
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=85.41 E-value=0.4 Score=60.16 Aligned_cols=56 Identities=20% Similarity=0.096 Sum_probs=25.8
Q ss_pred eeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCC--ccccccCCC-ccCcch
Q psy15223 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQK 1031 (2492)
Q Consensus 973 Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G--~KMSKS~GN-~i~p~~ 1031 (2492)
++...|.||-. |-.+..-++-.-..|-..++++.++.+.+| .|||||.+| .|+..|
T Consensus 222 ~lvp~G~DQ~~---~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 222 CLVPHAIDQDP---YFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp EEEEEEGGGHH---HHHHHHHHTGGGTCCCCEEEEECCCCC-------------CCCCBTTC
T ss_pred eecccccchHH---HHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEeccC
Confidence 45689999984 223322222221222235678888888899 799999998 776543
No 221
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=84.89 E-value=0.56 Score=60.46 Aligned_cols=58 Identities=26% Similarity=0.178 Sum_probs=38.8
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCC--ceeeeccCC-ccCcchh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQKL 2182 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p~~i 2182 (2492)
|-+++...|.||.. |-.+..-++ +....| .++++.++.+.+| .|||||.|| .|++.|=
T Consensus 302 ~~~~~VpvG~DQ~~---~i~l~Rdla~r~~~~~p--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~ 364 (477)
T 1r6t_A 302 DIQCLIPCAIDQDP---YFRMTRDVAPRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTDT 364 (477)
T ss_dssp CCEEEEEEEGGGHH---HHHHHHHHGGGGTCCCC--EEEEECCCEETTEEEEECCTTSTTCCCBTTCC
T ss_pred CCceeEeccccHHH---HHHHHHHHHHHhCCCCc--eeeecccccCCCCCccccCCCCCCCceeecCC
Confidence 34566668999984 223333222 222344 3677889999999 899999999 7876643
No 222
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=84.79 E-value=0.38 Score=59.15 Aligned_cols=59 Identities=24% Similarity=0.237 Sum_probs=35.7
Q ss_pred cCeeeeecccccchhhHHHHHHHHHH--h---cC-CCCc-eEEEE--eeEEEcCCC--ccccccCCC-c--cCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSII--L---NK-SAPY-KALLT--HGFVVDSKG--KKMSKSKGN-I--IKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~--~---~~-~~p~-k~v~~--hG~vld~~G--~KMSKS~GN-~--i~p~~ 1031 (2492)
|-+|+...|.||.. + -.+..-++ + .| ..+- .-+++ +.++.+.+| +|||||.|| . |+..|
T Consensus 136 ~~~~~vpvG~DQ~~-~--iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d 208 (328)
T 1i6k_A 136 YNTDIVPVGEDQKQ-H--IELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD 208 (328)
T ss_dssp TTCSEEECCGGGHH-H--HHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC
T ss_pred hCCCEEecccchHH-H--HHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecC
Confidence 45899999999984 2 22221111 1 12 1111 23332 567778888 999999999 6 76543
No 223
>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*
Probab=84.75 E-value=0.54 Score=58.53 Aligned_cols=54 Identities=22% Similarity=0.423 Sum_probs=43.8
Q ss_pred CHHHHHHHHHcCcEEEecccc---------cccccHHHHHHhhhcccCccccccCC-------CCCCCcc
Q psy15223 1 SLDVAREIIELGFYISFSGIV---------TFKNSKILQKVMGSISLKNMLIETDS-------PYLSPIP 54 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~~p~~~~~~etD~-------~~M~~a~ 54 (2492)
+.+.+++++++|+|+||.+.- ++++...+++++...|.+|+++++|. ||+.|..
T Consensus 246 d~~~~~~~l~~G~yl~fD~iG~~~~~~~p~d~~r~~~l~~lv~~g~~drILLstDa~~~~~~~py~~p~p 315 (360)
T 3tn4_A 246 DPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHDTVNVWLGRPFTLPEP 315 (360)
T ss_dssp CHHHHHHHHTTTCEEEECCTTCCCSTTCCCHHHHHHHHHHHHHTTCGGGEEECCCCEEEESSSCCCCCHH
T ss_pred CHHHHHHHHHcCCEEEEcccccccccCCCChHHHHHHHHHHHHhcCcceEEEecCCCcccccCCCCCccc
Confidence 467899999999999998632 24555678999999999999999998 7776543
No 224
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=84.64 E-value=0.56 Score=58.64 Aligned_cols=65 Identities=23% Similarity=0.226 Sum_probs=42.4
Q ss_pred ceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCCc-eeeec-cCCccCcchhhhccChhHHHHHHh
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKGK-KMSKS-KGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G~-KMSKS-~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
+++...|.||.. |-.+..-++ +....| .++.+.++.+.+|. ||||| .||.|...| .++.++=-+.
T Consensus 225 a~~VpvG~DQ~~---hl~l~Rdla~r~n~~~p--~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D-----~p~~i~kKI~ 293 (386)
T 3hzr_A 225 RCLVLDSIKNVQ---FHSIIDQIATTLNFIQP--TVLFHKMVPLLSGVTKFDIPSDHNSILLSD-----NAKQVERKIN 293 (386)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHHHTCCCC--EEEEECCCCCTTCTTCCCCCCTTTSCBTTC-----CHHHHHHHHH
T ss_pred ccccccccchHH---HHHHHHHHHHHcCCCCc--eEeecCeeeCCCCCCccCcCCCCCeeecCC-----CHHHHHHHHH
Confidence 566666999984 333332222 233444 56688888888885 99999 899998765 3555554443
No 225
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=84.57 E-value=0.38 Score=59.67 Aligned_cols=69 Identities=25% Similarity=0.302 Sum_probs=41.5
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--h---cCC-ccccEEEE---eeeEEcCCC--ceeeeccCC---ccCcchhhhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--L---NKS-APYKALLT---HGFVVDSKG--KKMSKSKGN---IIKPQKLCNL 2185 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l---~~~-~pfk~v~~---hG~vld~~G--~KMSKS~GN---vi~p~~ii~~ 2185 (2492)
|-+|+...|.||.. |-.+..-++ + +|. .+-...++ +.++.+.+| +|||||.|| .|++.|=
T Consensus 146 ~~a~~vpvG~DQ~~---~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~--- 219 (348)
T 2yy5_A 146 YQPDIVPVGNDQKQ---HLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDP--- 219 (348)
T ss_dssp TCCSEEECCGGGHH---HHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCC---
T ss_pred hCccEEEecccHHH---HHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCC---
Confidence 45799999999984 222222111 1 121 11223333 567777888 999999999 7877643
Q ss_pred cChhHHHHHHh
Q psy15223 2186 FGAEILRLWVA 2196 (2492)
Q Consensus 2186 yGaD~lR~~l~ 2196 (2492)
+|.+|==+.
T Consensus 220 --~~~i~~KI~ 228 (348)
T 2yy5_A 220 --KEVVVKKIR 228 (348)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHHH
Confidence 445554444
No 226
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=84.53 E-value=0.58 Score=60.26 Aligned_cols=58 Identities=26% Similarity=0.178 Sum_probs=39.0
Q ss_pred cCeeeeecccccchhhHHHHHHHHHH--hcCCCCceEEEEeeEEEcCCC--ccccccCCC-ccCcchh
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQKL 1032 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~--~~~~~p~k~v~~hG~vld~~G--~KMSKS~GN-~i~p~~i 1032 (2492)
|-+++...|.||.. |-.+..-++ +....| .++++.++...+| .|||||.|| .|+..|=
T Consensus 302 ~~~~~VpvG~DQ~~---~i~l~Rdla~r~~~~~p--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~ 364 (477)
T 1r6t_A 302 DIQCLIPCAIDQDP---YFRMTRDVAPRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTDT 364 (477)
T ss_dssp CCEEEEEEEGGGHH---HHHHHHHHGGGGTCCCC--EEEEECCCEETTEEEEECCTTSTTCCCBTTCC
T ss_pred CCceeEeccccHHH---HHHHHHHHHHHhCCCCc--eeeecccccCCCCCccccCCCCCCCceeecCC
Confidence 45667778999984 223332222 222344 3578889999999 899999999 7876543
No 227
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=84.42 E-value=0.42 Score=58.78 Aligned_cols=59 Identities=24% Similarity=0.265 Sum_probs=35.7
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--h---cCC-ccccE-EEE--eeeEEcCCC--ceeeeccCC-c--cCcch
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--L---NKS-APYKA-LLT--HGFVVDSKG--KKMSKSKGN-I--IKPQK 2181 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l---~~~-~pfk~-v~~--hG~vld~~G--~KMSKS~GN-v--i~p~~ 2181 (2492)
|-+|+...|.||.. |-.+..-++ + ++. .+... +++ +.++.+.+| +|||||.|| . |+..|
T Consensus 136 ~~~~~vpvG~DQ~~---~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d 208 (328)
T 1i6k_A 136 YNTDIVPVGEDQKQ---HIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD 208 (328)
T ss_dssp TTCSEEECCGGGHH---HHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC
T ss_pred hCCCEEecccchHH---HHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecC
Confidence 45799999999984 222222111 1 121 11123 332 567778888 999999999 6 77654
No 228
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=83.72 E-value=0.38 Score=59.62 Aligned_cols=59 Identities=27% Similarity=0.348 Sum_probs=36.7
Q ss_pred cCeeeeecccccchhhHHHHHHHHHH--h---cCC-CCceEEEE---eeEEEcCCC--ccccccCCC---ccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSII--L---NKS-APYKALLT---HGFVVDSKG--KKMSKSKGN---IIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~--~---~~~-~p~k~v~~---hG~vld~~G--~KMSKS~GN---~i~p~~ 1031 (2492)
|-+|+...|.||.. |-.+..-++ + .|. .+-...++ +.++.+.+| +|||||.|| .|...|
T Consensus 146 ~~a~~vpvG~DQ~~---~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D 218 (348)
T 2yy5_A 146 YQPDIVPVGNDQKQ---HLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD 218 (348)
T ss_dssp TCCSEEECCGGGHH---HHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC
T ss_pred hCccEEEecccHHH---HHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecC
Confidence 45899999999984 222222111 1 121 11223333 467777888 999999999 787654
No 229
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=83.69 E-value=0.47 Score=60.15 Aligned_cols=53 Identities=28% Similarity=0.273 Sum_probs=35.1
Q ss_pred eeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCc--eeeeccCC-ccCc
Q psy15223 2124 LYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK--KMSKSKGN-IIKP 2179 (2492)
Q Consensus 2124 l~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~--KMSKS~GN-vi~p 2179 (2492)
+...|.||.. |-.+..-++-.-..|-..++.+.++.+.+|. |||||.+| .|..
T Consensus 290 ~VPvG~DQ~~---hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l 345 (451)
T 3foc_A 290 LIASGIEQDP---YFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYL 345 (451)
T ss_dssp EEEECTTTHH---HHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBT
T ss_pred eeeeecchHH---HHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeee
Confidence 5677999995 4444444443222333456778888888885 99999998 5654
No 230
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=83.29 E-value=0.47 Score=60.17 Aligned_cols=54 Identities=28% Similarity=0.249 Sum_probs=35.7
Q ss_pred eeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCc--cccccCCC-ccCc
Q psy15223 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK--KMSKSKGN-IIKP 1029 (2492)
Q Consensus 973 Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~--KMSKS~GN-~i~p 1029 (2492)
.+...|.||.. |-.+..-++-.-+.|-..++.+.++.+.+|. |||||.+| .|..
T Consensus 289 ~~VPvG~DQ~~---hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l 345 (451)
T 3foc_A 289 CLIASGIEQDP---YFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYL 345 (451)
T ss_dssp EEEEECTTTHH---HHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBT
T ss_pred ceeeeecchHH---HHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeee
Confidence 35677999994 3344444443333344456778888888885 99999998 5654
No 231
>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3
Probab=83.06 E-value=0.8 Score=55.41 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=42.4
Q ss_pred CHHHHHHHHHcCcEEEeccc--c-ccc---ccHHHHHHhhhcccCccccccCCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGI--V-TFK---NSKILQKVMGSISLKNMLIETDSPYLS 51 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~--~-~~~---~~~~~~~~~~~~p~~~~~~etD~~~M~ 51 (2492)
+.+++++++++|+||+|+|. + +++ +...+++++...|+++++.+||.|++.
T Consensus 191 ~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dril~~TD~p~~~ 247 (291)
T 1bf6_A 191 NLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRS 247 (291)
T ss_dssp CHHHHHHHHHTTCEEEECCTTCTTTSCHHHHHHHHHHHHHTTCGGGEEECCCCCSGG
T ss_pred CHHHHHHHHHCCCEEEEccCcccCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCCCc
Confidence 46889999999999999976 3 233 455688999999999999999999863
No 232
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=82.96 E-value=0.65 Score=62.49 Aligned_cols=57 Identities=28% Similarity=0.292 Sum_probs=37.4
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCce-EEEEeeEEEcC-CCc-cccccCC-CccCcc
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYK-ALLTHGFVVDS-KGK-KMSKSKG-NIIKPQ 1030 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k-~v~~hG~vld~-~G~-KMSKS~G-N~i~p~ 1030 (2492)
-+|+...|.||.. |-.+..-++-.-+..|+ .++++.++.+. +|. |||||.+ |.|+..
T Consensus 183 ~ad~vpvG~DQ~~---~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~ 243 (690)
T 3p0j_A 183 KADICQLGLDQRK---VNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFME 243 (690)
T ss_dssp TCSEECCBGGGHH---HHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTT
T ss_pred CCCEEeccccHHH---HHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeeecc
Confidence 4789999999984 33333322222222232 46778888887 884 9999998 678754
No 233
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=82.29 E-value=0.72 Score=62.05 Aligned_cols=57 Identities=28% Similarity=0.300 Sum_probs=37.2
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHh-cCCcccc-EEEEeeeEEcC-CC-ceeeeccC-CccCcc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYK-ALLTHGFVVDS-KG-KKMSKSKG-NIIKPQ 2180 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l-~~~~pfk-~v~~hG~vld~-~G-~KMSKS~G-Nvi~p~ 2180 (2492)
|-+|+...|.||.. |-.+..-++- ++.. ++ .++.+.++.+. +| +|||||.+ |.|+..
T Consensus 182 ~~ad~vpvG~DQ~~---~l~l~Rdla~r~n~~-~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~ 243 (690)
T 3p0j_A 182 LKADICQLGLDQRK---VNMLAREYCDLIGRK-LKPVILSHHMLAGLKQGQAKMSKSDPDSAIFME 243 (690)
T ss_dssp TTCSEECCBGGGHH---HHHHHHHHHHHTTCC-CCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTT
T ss_pred hCCCEEeccccHHH---HHHHHHHHHHHhCCC-CCceEeecCeeecCCCCCcCCCCCCCCCeeecc
Confidence 34789999999984 3333332222 2222 22 46678888887 88 49999998 677754
No 234
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=79.86 E-value=0.97 Score=56.59 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=43.8
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhc-CCC-------Cc-eEEEEeeEEEcCCC------------------ccccccC
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILN-KSA-------PY-KALLTHGFVVDSKG------------------KKMSKSK 1023 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~-~~~-------p~-k~v~~hG~vld~~G------------------~KMSKS~ 1023 (2492)
-+|+...|.||.. |-.+..-++-. +.. .| .-+++|.++.+.+| +|||||.
T Consensus 180 ~~~~vp~G~DQ~~---~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~ 256 (375)
T 2cyc_A 180 GVTIAHAGMDQRK---AHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSK 256 (375)
T ss_dssp TCSEEEEEGGGHH---HHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSC
T ss_pred CCCeecccchHHH---HHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCC
Confidence 4789999999983 33333333322 220 11 23566788888888 8999998
Q ss_pred -CCccCcchhhhhcChhhHHHHhhc
Q psy15223 1024 -GNIIKPQKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 1024 -GN~i~p~~ii~~yGaD~lRl~l~s 1047 (2492)
+|.|+..|= ++.+|=.+.+
T Consensus 257 ~~~~I~L~d~-----p~~i~~KI~~ 276 (375)
T 2cyc_A 257 PYSAVFIHDS-----PEEIRQKLRK 276 (375)
T ss_dssp GGGSCBTTCC-----HHHHHHHHHH
T ss_pred CCCeeccCCC-----HHHHHHHHHH
Confidence 788887654 5555555543
No 235
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A*
Probab=79.76 E-value=1.1 Score=54.79 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=37.0
Q ss_pred CHHHHHHHHHcCcEEEecc--ccccccc-HHHHHHhhhc---ccCccccccCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSG--IVTFKNS-KILQKVMGSI---SLKNMLIETDSPYL 50 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~--~~~~~~~-~~~~~~~~~~---p~~~~~~etD~~~M 50 (2492)
+.+++++++++|+||||+| .+++.+. ...+.+...+ +.+|++.+||.+++
T Consensus 205 ~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~i~~~~~~g~~drilleTD~~~~ 260 (314)
T 2vc7_A 205 NIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCT 260 (314)
T ss_dssp CHHHHHHHHHTTCEEEECCTTCTTTSCHHHHHHHHHHHHHTTCTTTEEECCCCBSS
T ss_pred CHHHHHHHHHcCCEEEEeCCCcccCCCHHHHHHHHHHHHHcCCCCeEEEcCCcccc
Confidence 3688999999999999997 5556443 3343343444 47999999999875
No 236
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=79.74 E-value=0.99 Score=56.52 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=44.8
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhc-CC-------ccc-cEEEEeeeEEcCCC------------------ceeeecc
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILN-KS-------APY-KALLTHGFVVDSKG------------------KKMSKSK 2173 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~-~~-------~pf-k~v~~hG~vld~~G------------------~KMSKS~ 2173 (2492)
-+|+...|.||.. |-.+..-++-. +. ..| .-++.+.++.+.+| +|||||.
T Consensus 180 ~~~~vp~G~DQ~~---~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~ 256 (375)
T 2cyc_A 180 GVTIAHAGMDQRK---AHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSK 256 (375)
T ss_dssp TCSEEEEEGGGHH---HHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSC
T ss_pred CCCeecccchHHH---HHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCC
Confidence 4789999999984 33333333321 22 011 23566778888888 8999998
Q ss_pred -CCccCcchhhhccChhHHHHHHhc
Q psy15223 2174 -GNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2174 -GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+|.|+..|- ++.+|=.+.+
T Consensus 257 ~~~~I~L~d~-----p~~i~~KI~~ 276 (375)
T 2cyc_A 257 PYSAVFIHDS-----PEEIRQKLRK 276 (375)
T ss_dssp GGGSCBTTCC-----HHHHHHHHHH
T ss_pred CCCeeccCCC-----HHHHHHHHHH
Confidence 788887654 6666666654
No 237
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=79.21 E-value=1.4 Score=48.70 Aligned_cols=132 Identities=13% Similarity=0.167 Sum_probs=78.9
Q ss_pred Ccceeeeeee---CCEEE--EEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHh---
Q psy15223 65 EVPVGAVLVK---NNLVI--SYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHV--- 136 (2492)
Q Consensus 65 ~~pvGaviv~---~~~ii--~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~--- 136 (2492)
+...=|-.|+ ++.-+ ..|.-+......+..|||+.=|.......-+....=.-|-|+|-.||+-||..|+..
T Consensus 31 n~T~LCYeVk~~~~~s~~~~~~g~~~nq~~~~~~~HAE~~Fl~~~~~~~L~~~~~y~VTwy~SwSPC~~CA~~va~FL~~ 110 (190)
T 3vow_A 31 NETWLCFTVEGIKRRSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLAR 110 (190)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEETTSCGGGSHHHHHHHHHSSTTSCTTSEEEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred CceEEEEEEEccCCCCCCccccCeecCcCCCcccccHHHHHHHHHhhcCCCCCceEEEEEEEeCCchHHHHHHHHHHHHh
Confidence 3455566663 33333 245443333344578999999998764321111111367899999999999999874
Q ss_pred --CCceEEEecCCCCCC--ccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHH-hccCcccccccc
Q psy15223 137 --RLGEIIYGTPSFKTG--ACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFI-KRRNFVKNKSIN 201 (2492)
Q Consensus 137 --gi~rvv~g~~~~~~~--~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~-~~~~~~~~~~a~ 201 (2492)
++.=.+|.++--..- ..-.|...|.++|+...+ .. -+|=.--.+.|.. +.++|.+.+..+
T Consensus 111 ~~~v~L~If~aRLY~~~~~~~q~gLr~L~~~G~~v~i--M~---~~eF~~CW~~FVd~~~~~F~PW~~L~ 175 (190)
T 3vow_A 111 HSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEI--MD---YEDFKYCWENFVYNDNEPFKPWKGLK 175 (190)
T ss_dssp CTTEEEEEEEEECTTTTSHHHHHHHHHHHHHTCEEEE--CC---HHHHHHHHHHHBCCTTCCCCCCTTHH
T ss_pred CCCeEEEEEEEecccccCchHHHHHHHHHHCCCcEEE--eC---hHHHHHHHHHhccCCCCCCCcchhHh
Confidence 676677776533321 123467888888876433 22 3444445556663 467787777655
No 238
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=77.32 E-value=5.1 Score=44.84 Aligned_cols=151 Identities=14% Similarity=0.163 Sum_probs=83.6
Q ss_pred cccHHHHHHHHHHHHhc---cccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccc-ccc-chhhHhHHHHHHHH
Q psy15223 1389 GVMQKQCEKLLKSFFIK---RRNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRC-IIQ-LNNERIIKKRIRWK 1463 (2492)
Q Consensus 1389 g~l~~e~~~l~~~f~~~---rr~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs-~~~-~~~~~~~~~~~r~~ 1463 (2492)
|-+.==|+-+...||-+ ||+-.+.+++.-+. .-.+.+-+...+- ... ++... .-
T Consensus 33 GR~DvLcR~v~sAlflSh~iR~Dv~v~lvL~g~p--------------~pp~tI~f~g~~lr~l~~PDErs-------~a 91 (208)
T 2qwv_A 33 CHTEILAHCMMNSLFTAQSHREDVVIHLVLESTR--------------DYSRTITVEANEISDVGGFHEAA-------LI 91 (208)
T ss_dssp SCTHHHHHHHHHHHBCSSSBCSSEEEEEEEEECS--------------SSCEEEEEETTTC----CCSHHH-------HH
T ss_pred CceehHHHHHHHHHHHhccccCCeEEEEEEcCCC--------------CCCeEEEEeCcccccCCCCchHH-------HH
Confidence 56777788899999876 88888877665332 1222333333332 222 33211 22
Q ss_pred HHHHHHHhh----hC---CCCCCeec-cCCChhHHHhccc-ccceEEeccCCcccccccccCCCCCceEEEecCCCCCCH
Q psy15223 1464 NIIISATEQ----SG---RNILPVLA-PNIYFNNWLISKI-SCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTE 1534 (2492)
Q Consensus 1464 ~i~~~a~~Q----~~---r~~~p~i~-~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~ 1534 (2492)
..++.|.+- ++ +-..|-|. .-.+|++.+.... ....+++++.|.+.... ..+.+.+++.|=--||++
T Consensus 92 ~lI~kAL~~~~~~~~~~~~~~~pGi~v~~~~fe~ll~e~~~~~~ly~L~e~G~di~~~----~~~~~~~FvLgDH~g~~~ 167 (208)
T 2qwv_A 92 ALLVKALDASVGMGKEQTRVVQPGLTVRTISFEALLGELAEHHSLYMMDKKGDSIRDI----KIGPNPCFILTDHIPMPK 167 (208)
T ss_dssp HHHHHHHHHTTTCCTTCEEEEETTEEEECCCHHHHHHHHHTTSEEEEEEEEEEETTTS----CCCSSEEEEECC------
T ss_pred HHHHHHHHhccccccccccccCCCEEEecCCHHHHHHHHHhcCcEEEEeCCCcCHhhc----cCCCCCEEEEcCCCCCCH
Confidence 233334433 22 11233331 2358888776542 23477888877654321 223677899999999999
Q ss_pred HHHHHHHHcCCeEeecCCccceeeccchhh
Q psy15223 1535 KEENLAYECGVIILSLGKRILRTETASLVA 1564 (2492)
Q Consensus 1535 ~E~~~~~~~gf~~vsLG~rILR~ETA~~~~ 1564 (2492)
+|.++|...|...|||||..|=|.-+.+++
T Consensus 168 eee~~L~~~~~~~iSlGP~~l~A~hcI~~v 197 (208)
T 2qwv_A 168 KSGNSMKRLGVEKISLGPKMLFASQCVTLI 197 (208)
T ss_dssp ----CTTTTTCEEEECCSSCCCHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEeCchHHHHHHHHHHH
Confidence 999999999999999999999887766554
No 239
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=74.39 E-value=11 Score=43.27 Aligned_cols=122 Identities=12% Similarity=0.049 Sum_probs=71.8
Q ss_pred HHHHHHhccccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCC
Q psy15223 1398 LLKSFFIKRRNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNI 1477 (2492)
Q Consensus 1398 l~~~f~~~rr~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~ 1477 (2492)
-+.+..++|...-..++-.+-.+..+=-+++-|.-+|++.|+.+.......+ . +..++.=+ ..+
T Consensus 14 ~~~~~l~~~~~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~v~lv~~~~~~~~----~-----------~~r~s~Ga-~~~ 77 (211)
T 1zjr_A 14 RLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKAK----I-----------NEGITQGS-HKW 77 (211)
T ss_dssp HHHHHHTTCEEEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTCCC----C-----------CHHHHTTG-GGS
T ss_pred hHHHHHhccCCCeEEEEECCCCcCcHHHHHHHHHHhCCCEEEEeCCCcCchH----H-----------HHHHcCCC-ccc
Confidence 3445555433222345556778889999999999999999988754322110 0 11122222 345
Q ss_pred CCeeccCCChhHHHhcccc-cceEEecc-C-CcccccccccCCCCCceEEEecCCC-CCCHHHHHH
Q psy15223 1478 LPVLAPNIYFNNWLISKIS-CARILLSP-R-GRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENL 1539 (2492)
Q Consensus 1478 ~p~i~~~~~~~~~l~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~iGPEG-G~s~~E~~~ 1539 (2492)
+|-. ...++.+++..... ...++... . +...+. ....+++++|++|.|| |+|+++++.
T Consensus 78 l~~~-~~~~l~~~l~~l~~~g~~i~~~~~~~~~~~~~---~~~~~~~~alV~G~E~~GLs~~~l~~ 139 (211)
T 1zjr_A 78 VFIE-KVDNPVQKLLEFKNRGFQIVATWLSKESVNFR---EVDYTKPTVLVVGNELQGVSPEIVEI 139 (211)
T ss_dssp SEEE-ECSCHHHHHHHHHHTTCEEEEEBCSTTSEEGG---GSCTTSSEEEEEECBTTBSCHHHHTT
T ss_pred ceeE-ecCCHHHHHHHHHHCCCEEEEEecCCCCcchh---hcccCCCEEEEECCcccCCCHHHHHh
Confidence 6654 46788888765332 22333322 2 222222 2234578999999999 999998765
No 240
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=72.42 E-value=7.5 Score=43.94 Aligned_cols=121 Identities=11% Similarity=0.138 Sum_probs=71.1
Q ss_pred HHHHHhccccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCC
Q psy15223 1399 LKSFFIKRRNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNIL 1478 (2492)
Q Consensus 1399 ~~~f~~~rr~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~ 1478 (2492)
+.++..+|...-..++-.+-.+..+=-+++-|.-+|++.|+.+....... +. .+ ++ .....++
T Consensus 12 ~~~~l~~~~~~~~vvLd~~~dp~NlGaI~Rta~a~G~~~v~l~~~~~~~~-----~~----------~r-~s-~Ga~~~l 74 (194)
T 1v2x_A 12 IEEVLRRRQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVP-----TF----------NE-TS-GGSHKWV 74 (194)
T ss_dssp HHHHHTTCBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSC-----CC----------CS-SC-SSGGGTS
T ss_pred HHHHHhcCCCCEEEEEeCCCCcChHHHHHHHHHHhCCCEEEEeCCCCCch-----hh----------HH-HC-CCChhee
Confidence 34444444333345556677888999999999999999998875432210 00 00 11 1112345
Q ss_pred CeeccCCChhHHHhcccc-cceEEecc-C-CcccccccccCCCCCceEEEecCCC-CCCHHHHHHH
Q psy15223 1479 PVLAPNIYFNNWLISKIS-CARILLSP-R-GRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENLA 1540 (2492)
Q Consensus 1479 p~i~~~~~~~~~l~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~iGPEG-G~s~~E~~~~ 1540 (2492)
| +....++.+++..... ...++... . +...+. ....+++++|++|.|| |+|+++++..
T Consensus 75 ~-~~~~~~l~~~l~~l~~~g~~i~~~~~~~~~~~~~---~~~~~~~~alv~G~E~~Gls~~~l~~~ 136 (194)
T 1v2x_A 75 Y-LRVHPDLHEAFRFLKERGFTVYATALREDARDFR---EVDYTKPTAVLFGAEKWGVSEEALALA 136 (194)
T ss_dssp E-EEEESSHHHHHHHHHHTTCEEEEECCCTTSEEGG---GSCTTSSEEEEECBTTTBSCHHHHHHS
T ss_pred e-eEecCCHHHHHHHHHHCCCEEEEEecCCCCccHh---HcccCCCeEEEECCCCCCCCHHHHHhC
Confidence 5 5555688888765432 22333322 2 222221 2234678999999999 9999988763
No 241
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=72.27 E-value=2.2 Score=52.52 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=38.6
Q ss_pred cCceeeecccchhhhh-HHHHHHHHHHh-cCCccc--cEEEEe---eeEEcC-CC-ceeeeccC---CccCcchhhhccC
Q psy15223 2120 FPADLYLEGSDQHRGW-FHSSLLTSIIL-NKSAPY--KALLTH---GFVVDS-KG-KKMSKSKG---NIIKPQKLCNLFG 2187 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~w-f~~~l~~~~~l-~~~~pf--k~v~~h---G~vld~-~G-~KMSKS~G---Nvi~p~~ii~~yG 2187 (2492)
|-+|+...|.||.... +.+-+....-. ++ .+| ...+++ .++.+. +| +|||||.+ |.|...|=
T Consensus 151 ~~ad~vpvG~DQ~~hleltRdia~rfn~~yg-~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~----- 224 (346)
T 3n9i_A 151 YQTNQVPVGEDQKQHLELSRDIASRFNNLYG-DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLED----- 224 (346)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHS-SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSC-----
T ss_pred hCceEEEeccchHHHHHHHHHHHHHhccccC-CcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCC-----
Confidence 4579999999998422 22223332221 12 222 233333 345555 67 59999997 57765432
Q ss_pred hhHHHHHHh
Q psy15223 2188 AEILRLWVA 2196 (2492)
Q Consensus 2188 aD~lR~~l~ 2196 (2492)
+|.+|==+.
T Consensus 225 p~~i~kKI~ 233 (346)
T 3n9i_A 225 PKSVVKKIK 233 (346)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445554443
No 242
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=69.66 E-value=2.5 Score=52.06 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=33.8
Q ss_pred cCeeeeecccccchhh-HHHHHHHHHHh-cCCCCc--eEEEEe---eEEEcC-CC-ccccccCC---CccCcc
Q psy15223 970 FPADLYLEGSDQHRGW-FHSSLLTSIIL-NKSAPY--KALLTH---GFVVDS-KG-KKMSKSKG---NIIKPQ 1030 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgw-f~s~l~~~~~~-~~~~p~--k~v~~h---G~vld~-~G-~KMSKS~G---N~i~p~ 1030 (2492)
|-+|+...|.||.... +.+-+....-. .+ .+| ...+++ .++... +| +|||||.+ |.|...
T Consensus 151 ~~ad~vpvG~DQ~~hleltRdia~rfn~~yg-~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~ 222 (346)
T 3n9i_A 151 YQTNQVPVGEDQKQHLELSRDIASRFNNLYG-DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELL 222 (346)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHS-SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTT
T ss_pred hCceEEEeccchHHHHHHHHHHHHHhccccC-CcccccchhccCCcccCccCCCCccccCCCCCCCCceecCC
Confidence 4589999999998422 12223332221 12 222 233333 345555 67 59999997 677654
No 243
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=66.22 E-value=1 Score=55.42 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=40.6
Q ss_pred cCceeeecccchhhhh-HHHHHHHHHH-hcCC--ccc--cEEEE---eeeEEcC-CC-ceeeecc---CCccCcchhhhc
Q psy15223 2120 FPADLYLEGSDQHRGW-FHSSLLTSII-LNKS--APY--KALLT---HGFVVDS-KG-KKMSKSK---GNIIKPQKLCNL 2185 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~w-f~~~l~~~~~-l~~~--~pf--k~v~~---hG~vld~-~G-~KMSKS~---GNvi~p~~ii~~ 2185 (2492)
|-+|+...|.||.... +.+-+....- .++. .+| ...++ +.++.+. +| +|||||. +|.|...|=
T Consensus 142 ~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~--- 218 (341)
T 3sz3_A 142 YGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLED--- 218 (341)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCC---
T ss_pred cCCCEEEeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCC---
Confidence 4579999999998422 2222333222 1231 233 23333 3466666 57 6999999 788876532
Q ss_pred cChhHHHHHHh
Q psy15223 2186 FGAEILRLWVA 2196 (2492)
Q Consensus 2186 yGaD~lR~~l~ 2196 (2492)
+|.+|==+.
T Consensus 219 --p~~i~kKI~ 227 (341)
T 3sz3_A 219 --PKSIIKKIN 227 (341)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHhh
Confidence 455554444
No 244
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=65.80 E-value=0.84 Score=56.19 Aligned_cols=62 Identities=24% Similarity=0.267 Sum_probs=35.7
Q ss_pred cCeeeeecccccchhh-HHHHHHHHHH-hcCC--CCc--eEEEE---eeEEEcC-CC-ccccccC---CCccCcch
Q psy15223 970 FPADLYLEGSDQHRGW-FHSSLLTSII-LNKS--APY--KALLT---HGFVVDS-KG-KKMSKSK---GNIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgw-f~s~l~~~~~-~~~~--~p~--k~v~~---hG~vld~-~G-~KMSKS~---GN~i~p~~ 1031 (2492)
|-+|+...|.||.... +.+-+....- ..+. .+| ...++ +.++... +| +|||||. +|.|...|
T Consensus 142 ~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 217 (341)
T 3sz3_A 142 YGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE 217 (341)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC
T ss_pred cCCCEEEeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC
Confidence 4589999999998422 1222333222 1231 233 33333 3566666 57 6999999 78886543
No 245
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=63.52 E-value=4 Score=50.90 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=37.9
Q ss_pred cCceeeecccchhhhh-HHHHHHHHHHhcCCccc--cEEEEe---eeEEcC-CC-ceeeecc---CCccCcchhhhccCh
Q psy15223 2120 FPADLYLEGSDQHRGW-FHSSLLTSIILNKSAPY--KALLTH---GFVVDS-KG-KKMSKSK---GNIIKPQKLCNLFGA 2188 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~w-f~~~l~~~~~l~~~~pf--k~v~~h---G~vld~-~G-~KMSKS~---GNvi~p~~ii~~yGa 2188 (2492)
|-+|+...|.||.... +.+-+....-..-..+| ..-+++ .++.+. +| +|||||. ||.|...|= +
T Consensus 170 ~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~-----p 244 (388)
T 3prh_A 170 YGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDE-----P 244 (388)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCC-----H
T ss_pred hCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCC-----H
Confidence 4579999999998411 12222222211111222 222332 234443 33 7999999 899976542 4
Q ss_pred hHHHHHHh
Q psy15223 2189 EILRLWVA 2196 (2492)
Q Consensus 2189 D~lR~~l~ 2196 (2492)
|.+|==+.
T Consensus 245 ~~I~kKI~ 252 (388)
T 3prh_A 245 KQLEKKIK 252 (388)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 45554443
No 246
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=62.40 E-value=3.5 Score=46.15 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=49.2
Q ss_pred CchhHHHhhcc-cccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchh
Q psy15223 353 IYFNNWLISKI-SCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLV 431 (2492)
Q Consensus 353 ~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~ 431 (2492)
.+|++++.... ....++++++|.+.... ..+.+..++.|=--||+++|.+.+...|...|||||..|=|.=+.++
T Consensus 121 ~~fe~ll~e~~~~~~ly~L~e~G~di~~~----~~~~~~~FvLgDH~g~~~eee~~L~~~~~~~iSlGP~~l~A~hcI~~ 196 (208)
T 2qwv_A 121 ISFEALLGELAEHHSLYMMDKKGDSIRDI----KIGPNPCFILTDHIPMPKKSGNSMKRLGVEKISLGPKMLFASQCVTL 196 (208)
T ss_dssp CCHHHHHHHHHTTSEEEEEEEEEEETTTS----CCCSSEEEEECC----------CTTTTTCEEEECCSSCCCHHHHHHH
T ss_pred CCHHHHHHHHHhcCcEEEEeCCCcCHhhc----cCCCCCEEEEcCCCCCCHHHHHHHHhcCCeEEEeCchHHHHHHHHHH
Confidence 47777776432 23467788877763321 12357889999999999999999999999999999999988877766
Q ss_pred heee
Q psy15223 432 ALAI 435 (2492)
Q Consensus 432 ~~~~ 435 (2492)
+...
T Consensus 197 vhn~ 200 (208)
T 2qwv_A 197 IHNE 200 (208)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 247
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=62.01 E-value=4.3 Score=50.65 Aligned_cols=62 Identities=21% Similarity=0.217 Sum_probs=33.2
Q ss_pred cCeeeeecccccchhh-HHHHHHHHHHhcCCCCc--eEEEEe---eEEEcC-CC-ccccccC---CCccCcch
Q psy15223 970 FPADLYLEGSDQHRGW-FHSSLLTSIILNKSAPY--KALLTH---GFVVDS-KG-KKMSKSK---GNIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgw-f~s~l~~~~~~~~~~p~--k~v~~h---G~vld~-~G-~KMSKS~---GN~i~p~~ 1031 (2492)
|-+|+...|.||.... +.+-+....-..-..+| ..-+++ .++... +| +|||||. ||.|...|
T Consensus 170 ~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D 242 (388)
T 3prh_A 170 YGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD 242 (388)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC
T ss_pred hCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC
Confidence 4589999999998411 11222222211111222 222332 234444 33 7999999 89996543
No 248
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=58.52 E-value=28 Score=38.70 Aligned_cols=123 Identities=12% Similarity=-0.010 Sum_probs=64.9
Q ss_pred HHHHhccccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCC-CC
Q psy15223 1400 KSFFIKRRNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRN-IL 1478 (2492)
Q Consensus 1400 ~~f~~~rr~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~-~~ 1478 (2492)
+.=..++..+-..++-.+-.+..+=-++|-|.-+|++.++ + +.++. .+.+.+ .++ |+ ++.. .+
T Consensus 8 ~~~~~~~~~~l~vvLd~v~dP~NlGaI~Rta~afG~~~vi-v-~~~~~-~~~~~~----------~~r-as--~g~~~~v 71 (182)
T 3l8u_A 8 KENKLLTLGRNHVVLFQPQIPANTGNIARTCAATNTSLHI-I-RPMGF-PIDDKK----------MKR-AG--LDYWDKL 71 (182)
T ss_dssp -------CCCEEEEEESCCCHHHHHHHHHHHHHHTCEEEE-E-SCCSS-CCCTTT----------C---------CCC-C
T ss_pred HHHhhcCCCCEEEEEeCCCCcCcHHHHHHHHHHcCCcEEE-E-CCCCC-CCCcHH----------HHH-hC--cChhhhC
Confidence 3333444544455566677889999999999999996553 4 44552 222222 112 22 2222 24
Q ss_pred CeeccCCChhHHHhcccccceEEeccCCcccccccccCCCCCceEEEecCCC-CCCHHHHHHHH
Q psy15223 1479 PVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENLAY 1541 (2492)
Q Consensus 1479 p~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEG-G~s~~E~~~~~ 1541 (2492)
| +....++.+++... ....+.++..+...+.... ....++++|++|.|| |+|+++++.+.
T Consensus 72 ~-i~~~~~l~~~l~~l-g~~i~~~~~~~~~~~~~~~-~~~~~~~alV~G~E~~GLs~~~l~~~~ 132 (182)
T 3l8u_A 72 D-VHFYDSLNDFMNIC-SGKLHLITKFANKTYSDEN-YDDSEHHYFLFGREDKGLPEEFMRQHS 132 (182)
T ss_dssp C-EEEESSHHHHHHHC-CSEEEEECSSCSSBGGGSC-CCSSSCEEEEECBTTTBSCHHHHHHTG
T ss_pred C-eEEcCCHHHHHHHC-CCEEEEEEcCCCccccccc-cCCCCCEEEEECCccCCCCHHHHHHhC
Confidence 4 33456888888765 2223333333333222211 111238999999996 99999886333
No 249
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=56.87 E-value=17 Score=40.61 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=65.7
Q ss_pred cceeEEE-EecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeecc-CC
Q psy15223 1408 NFVKNKI-QALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAP-NI 1485 (2492)
Q Consensus 1408 ~~~~~l~-~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~-~~ 1485 (2492)
...+.++ -.+-.+..+=-+++-|.-+|++.++. +.+.. +.. + .+..+ .+....++|.... ..
T Consensus 24 ~~~~~vvLd~i~dp~NlGaI~Rta~a~G~~~vil--~~~~~--~~~-k----------~~~r~-s~ga~~~l~~~~~~~~ 87 (184)
T 2ha8_A 24 ISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVV--GSLQC--ISD-K----------QFQHL-SVSAEQWLPLVEVKPP 87 (184)
T ss_dssp CCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEE--SCGGG--GGS-H----------HHHHH-HTTGGGTSCEEECCGG
T ss_pred CCCEEEEEcCCCCCCcHHHHHHHHHHhCCCEEEE--CCCCC--CCc-c----------cceee-cCCccceEEEEEEcCC
Confidence 3333333 34556788889999999999999974 33221 221 1 11112 2233456776542 35
Q ss_pred ChhHHHhcccc-cceEEecc-C-CcccccccccCCCCCceEEEecCCC-CCCHHHHHHH
Q psy15223 1486 YFNNWLISKIS-CARILLSP-R-GRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENLA 1540 (2492)
Q Consensus 1486 ~~~~~l~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~iGPEG-G~s~~E~~~~ 1540 (2492)
++.+++..... ...++... . +...+. ....+++++|++|.|| |+|++.++..
T Consensus 88 ~~~~~l~~lk~~g~~i~~~~~~~~~~~~~---~~~~~~~~alV~G~E~~Gls~~~l~~~ 143 (184)
T 2ha8_A 88 QLIDYLQQKKTEGYTIIGVEQTAKSLDLT---QYCFPEKSLLLLGNEREGIPANLIQQL 143 (184)
T ss_dssp GHHHHHHHHHHTTCEEEEECCCTTCEEGG---GCCCCSSEEEEECBTTTBSCHHHHTTC
T ss_pred CHHHHHHHHHHCCCEEEEEECCCCCcchh---hccCCCCEEEEECCcccCCCHHHHHhC
Confidence 78887765322 22333322 2 122221 2234678999999999 9999987653
No 250
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=51.80 E-value=9.9 Score=47.40 Aligned_cols=56 Identities=23% Similarity=0.166 Sum_probs=36.1
Q ss_pred CeeeeecccccchhhHHHHHHHHHHh--cC--CCCceEEEEeeEEEcCCCccccccCCC-ccCc
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIIL--NK--SAPYKALLTHGFVVDSKGKKMSKSKGN-IIKP 1029 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~--~~--~~p~k~v~~hG~vld~~G~KMSKS~GN-~i~p 1029 (2492)
-+.+.--|.||.. |-.+..-++- .+ ..|-...+.|-++...+|+|||||..| .|..
T Consensus 208 ~a~~VPVG~DQ~~---hleltRdiA~rfn~~~~~~~P~~~~~~~~pgldG~KmS~S~~ns~I~l 268 (372)
T 3a04_A 208 RHVVVPVGADQDP---HLRLTRDLADRMAGVVELERPASTYHKLQPGLDGRKMSSSRPDSTIFL 268 (372)
T ss_dssp CCEEEEEEGGGHH---HHHHHHHHHHHTTTTSCCCCCEEEEECCCBCTTSSBCCTTSGGGSCBT
T ss_pred cceecccchhhHH---HHHHHHHHHHHhcCcccccChhhhhhcccCCCCCCccCCCCCCccccc
Confidence 3567777999984 3334333332 22 233456777888778899999999855 5643
No 251
>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii}
Probab=51.26 E-value=9 Score=46.31 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=41.1
Q ss_pred HHHHHHHc-CcEEEeccccccccc--------HHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 4 VAREIIEL-GFYISFSGIVTFKNS--------KILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 4 ~~~~~~~~-g~~~~~~~~~~~~~~--------~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
.+.++++. |+|++++|..++.+. ..+++++...+.+|++.+||-|++.+.
T Consensus 197 ~~~~l~~~~nv~~k~Sg~~~~~~~~~~~~~~~~~l~~~~~~~g~dRll~gSD~P~~~~~ 255 (294)
T 4i6k_A 197 KFLSLLNVKQHWIKVSGFYRLGATPSNINIAQQAYNIFKEKGFLHKLIWGSDWPHTQHE 255 (294)
T ss_dssp HHHHHCCTTTEEEECCCGGGSSSTTHHHHHHHHHHHHHHHHTCGGGEECCCCBTCTTCT
T ss_pred HHHHHHhCCCEEEEecccccccccCCCchhhHHHHHHHHHHhCcccEEEeCCCCCCCCc
Confidence 34445555 899999999998753 468899999999999999999999775
No 252
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=49.94 E-value=11 Score=47.08 Aligned_cols=57 Identities=23% Similarity=0.163 Sum_probs=36.7
Q ss_pred CceeeecccchhhhhHHHHHHHHHHh--cC--CccccEEEEeeeEEcCCCceeeeccCC-ccCcc
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIIL--NK--SAPYKALLTHGFVVDSKGKKMSKSKGN-IIKPQ 2180 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l--~~--~~pfk~v~~hG~vld~~G~KMSKS~GN-vi~p~ 2180 (2492)
-+.+.-.|.||.. |-.+..-++- .+ ..|....+.+.++-..+|.|||||.+| .|...
T Consensus 208 ~a~~VPVG~DQ~~---hleltRdiA~rfn~~~~~~~P~~~~~~~~pgldG~KmS~S~~ns~I~l~ 269 (372)
T 3a04_A 208 RHVVVPVGADQDP---HLRLTRDLADRMAGVVELERPASTYHKLQPGLDGRKMSSSRPDSTIFLT 269 (372)
T ss_dssp CCEEEEEEGGGHH---HHHHHHHHHHHTTTTSCCCCCEEEEECCCBCTTSSBCCTTSGGGSCBTT
T ss_pred cceecccchhhHH---HHHHHHHHHHHhcCcccccChhhhhhcccCCCCCCccCCCCCCcccccC
Confidence 3567788999984 3344333332 21 234456777778777899999999854 56543
No 253
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=49.08 E-value=65 Score=35.79 Aligned_cols=110 Identities=12% Similarity=0.002 Sum_probs=62.0
Q ss_pred eeEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHH
Q psy15223 279 ITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNW 358 (2492)
Q Consensus 279 i~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~ 358 (2492)
+.++-.+-.+..+--|+|-|.-+|++.++ + +.++. .+... + ++..+ ++......+....++.++
T Consensus 19 ~vvLd~v~dP~NlGaI~Rta~afG~~~vi-v-~~~~~-~~~~~----~------~~ras---~g~~~~v~i~~~~~l~~~ 82 (182)
T 3l8u_A 19 HVVLFQPQIPANTGNIARTCAATNTSLHI-I-RPMGF-PIDDK----K------MKRAG---LDYWDKLDVHFYDSLNDF 82 (182)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHTCEEEE-E-SCCSS-CCCTT----T------C---------CCC-CCEEEESSHHHH
T ss_pred EEEEeCCCCcCcHHHHHHHHHHcCCcEEE-E-CCCCC-CCCcH----H------HHHhC---cChhhhCCeEEcCCHHHH
Confidence 34445778999999999999999996554 3 34442 22222 1 11222 222222234456788888
Q ss_pred HhhcccccEEEeccCCcccccccccCCCCCceEEEeCCCC-CCCHHHHH
Q psy15223 359 LISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEEN 406 (2492)
Q Consensus 359 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEG-Gfs~~E~~ 406 (2492)
+... +...+.+...+...+.... .....++.+++|.|| |+++++++
T Consensus 83 l~~l-g~~i~~~~~~~~~~~~~~~-~~~~~~~alV~G~E~~GLs~~~l~ 129 (182)
T 3l8u_A 83 MNIC-SGKLHLITKFANKTYSDEN-YDDSEHHYFLFGREDKGLPEEFMR 129 (182)
T ss_dssp HHHC-CSEEEEECSSCSSBGGGSC-CCSSSCEEEEECBTTTBSCHHHHH
T ss_pred HHHC-CCEEEEEEcCCCccccccc-cCCCCCEEEEECCccCCCCHHHHH
Confidence 8765 3233333433333222221 111237999999997 99999886
No 254
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=44.28 E-value=63 Score=35.95 Aligned_cols=110 Identities=14% Similarity=0.146 Sum_probs=63.8
Q ss_pred eeEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceec-cCCchhH
Q psy15223 279 ITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLA-PNIYFNN 357 (2492)
Q Consensus 279 i~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~-~~~~~~~ 357 (2492)
+.++-.+-.+..+--|++-|.-+|++.++... +.. ++.+ .+..++ +...-++|-.. ...++.+
T Consensus 28 ~vvLd~i~dp~NlGaI~Rta~a~G~~~vil~~--~~~--~~~k-----------~~~r~s-~ga~~~l~~~~~~~~~~~~ 91 (184)
T 2ha8_A 28 IVVASLIDKPTNLGGLCRTCEVFGASVLVVGS--LQC--ISDK-----------QFQHLS-VSAEQWLPLVEVKPPQLID 91 (184)
T ss_dssp EEECTTCCCHHHHHHHHHHHHHTTCSEEEESC--GGG--GGSH-----------HHHHHH-TTGGGTSCEEECCGGGHHH
T ss_pred EEEEcCCCCCCcHHHHHHHHHHhCCCEEEECC--CCC--CCcc-----------cceeec-CCccceEEEEEEcCCCHHH
Confidence 33344667889999999999999999997533 221 1211 111122 22234566544 2467888
Q ss_pred HHhhccc-ccEEEe-ccC-CcccccccccCCCCCceEEEeCCCC-CCCHHHHHH
Q psy15223 358 WLISKIS-CARILL-SPR-GRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENL 407 (2492)
Q Consensus 358 ~l~~~~~-~~~~l~-~~~-~~~~~~~~~~~~~~~~v~~~iGPEG-Gfs~~E~~~ 407 (2492)
++..... ...++. +.. +...+.. ...++++.+++|.|| |+++++++.
T Consensus 92 ~l~~lk~~g~~i~~~~~~~~~~~~~~---~~~~~~~alV~G~E~~Gls~~~l~~ 142 (184)
T 2ha8_A 92 YLQQKKTEGYTIIGVEQTAKSLDLTQ---YCFPEKSLLLLGNEREGIPANLIQQ 142 (184)
T ss_dssp HHHHHHHTTCEEEEECCCTTCEEGGG---CCCCSSEEEEECBTTTBSCHHHHTT
T ss_pred HHHHHHHCCCEEEEEECCCCCcchhh---ccCCCCEEEEECCcccCCCHHHHHh
Confidence 8764322 223332 222 2222222 223467899999999 999998764
No 255
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=42.39 E-value=63 Score=37.95 Aligned_cols=112 Identities=12% Similarity=0.136 Sum_probs=66.8
Q ss_pred eeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCChhH
Q psy15223 1410 VKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNN 1489 (2492)
Q Consensus 1410 ~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~~~ 1489 (2492)
-.-++-.+-.+..+=-+++-|.-+|++.|+. +.++...+.. + .++ |+.=+ -.++|-.. ..++.+
T Consensus 106 ~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil--~~~~~~~~~~-~----------~~r-as~Ga-~~~l~~~~-~~~~~~ 169 (253)
T 1gz0_A 106 FLLILDGVTDPHNLGACLRSADAAGVHAVIV--PKDRSAQLNA-T----------AKK-VACGA-AESVPLIR-VTNLAR 169 (253)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHTCSEEEE--ESSSSCCCCH-H----------HHH-HHTTH-HHHSCEEE-ESCHHH
T ss_pred EEEEEeCCCCcCcHHHHHHHHHHhCCCEEEE--eCCCCCCCCH-H----------HHh-hhcch-heEEEEEE-eCCHHH
Confidence 3455566778899999999999999999965 4444333322 1 222 22212 23466543 357777
Q ss_pred HHhccccc-ceEEe-ccCCcccccccccCCCCCceEEEecCCC-CCCHHHHHHH
Q psy15223 1490 WLISKISC-ARILL-SPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENLA 1540 (2492)
Q Consensus 1490 ~l~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~iGPEG-G~s~~E~~~~ 1540 (2492)
++...... ..++. +..+...+. ....+++++|++|.|| |+|++.++..
T Consensus 170 ~l~~l~~~g~~i~~~~~~~~~~~~---~~~~~~~~alv~G~E~~Gls~~~~~~~ 220 (253)
T 1gz0_A 170 TMRMLQEENIWIVGTAGEADHTLY---QSKMTGRLALVMGAEGEGMRRLTREHC 220 (253)
T ss_dssp HHHHHHHTTCEEEEECTTCSEEGG---GSCCCSSEEEEEEBTTTBSCHHHHHTC
T ss_pred HHHHHHHCCCEEEEEECCCCcchh---hccCCCCEEEEECCCCcCcCHHHHHhC
Confidence 77643222 22332 223332222 2234578999999999 9998877653
No 256
>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15
Probab=41.22 E-value=11 Score=45.18 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=41.2
Q ss_pred HHHHHHHHc-CcEEEeccccccccc---------HHHHHHhhhcccCccccccCCCCCCC
Q psy15223 3 DVAREIIEL-GFYISFSGIVTFKNS---------KILQKVMGSISLKNMLIETDSPYLSP 52 (2492)
Q Consensus 3 ~~~~~~~~~-g~~~~~~~~~~~~~~---------~~~~~~~~~~p~~~~~~etD~~~M~~ 52 (2492)
+.+.++.+. |+|++++|..++.+. +.++.++..++.+|++.+||.|++.+
T Consensus 183 ~~~~~l~~~~n~y~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~g~drll~gSD~P~~~~ 242 (288)
T 2ffi_A 183 AELLTLSGRGKVWVKVSGIYRLQGSPEENLAFARQALCALEAHYGAERLMWGSDWPHTQH 242 (288)
T ss_dssp HHHTTCCCCSCEEEEEECGGGSSSCHHHHHHHHHHHHHHHHHHTCGGGEEEECCTTCTTC
T ss_pred HHHHHHHhCCCEEEEeCcchhhccccCCCHHHHHHHHHHHHHHhCCCceEEecCCCCCCC
Confidence 455555565 899999999888664 56888889999999999999999865
No 257
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=40.29 E-value=48 Score=37.83 Aligned_cols=109 Identities=13% Similarity=0.064 Sum_probs=65.6
Q ss_pred eeEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHH
Q psy15223 279 ITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNW 358 (2492)
Q Consensus 279 i~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~ 358 (2492)
+.++-.+-.+..+--|++-|.-+|++.++.+....... + .+..++.=+ ..++|-. ...++.++
T Consensus 27 ~vvLd~i~dp~NlGaI~Rta~a~G~~~v~lv~~~~~~~----~-----------~~~r~s~Ga-~~~l~~~-~~~~l~~~ 89 (211)
T 1zjr_A 27 IVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKA----K-----------INEGITQGS-HKWVFIE-KVDNPVQK 89 (211)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTCC----C-----------CCHHHHTTG-GGSSEEE-ECSCHHHH
T ss_pred EEEEECCCCcCcHHHHHHHHHHhCCCEEEEeCCCcCch----H-----------HHHHHcCCC-cccceeE-ecCCHHHH
Confidence 44455778889999999999999999999875432211 0 011122222 2345544 46788888
Q ss_pred Hhhccc-ccEEEe-ccC-CcccccccccCCCCCceEEEeCCCC-CCCHHHHHH
Q psy15223 359 LISKIS-CARILL-SPR-GRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENL 407 (2492)
Q Consensus 359 l~~~~~-~~~~l~-~~~-~~~~~~~~~~~~~~~~v~~~iGPEG-Gfs~~E~~~ 407 (2492)
+..... +..++. +.. +...+.. ...++++.+++|.|| |+++++++.
T Consensus 90 l~~l~~~g~~i~~~~~~~~~~~~~~---~~~~~~~alV~G~E~~GLs~~~l~~ 139 (211)
T 1zjr_A 90 LLEFKNRGFQIVATWLSKESVNFRE---VDYTKPTVLVVGNELQGVSPEIVEI 139 (211)
T ss_dssp HHHHHHTTCEEEEEBCSTTSEEGGG---SCTTSSEEEEEECBTTBSCHHHHTT
T ss_pred HHHHHHCCCEEEEEecCCCCcchhh---cccCCCEEEEECCcccCCCHHHHHh
Confidence 764322 223332 222 2222222 223467899999999 999998753
No 258
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=39.81 E-value=54 Score=39.02 Aligned_cols=112 Identities=14% Similarity=0.118 Sum_probs=71.3
Q ss_pred eEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCChhHH
Q psy15223 1411 KNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNW 1490 (2492)
Q Consensus 1411 ~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~~~~ 1490 (2492)
+-++-.+-.+..+=-+++-|.-+|++.|+.... ++...+.. + .++ ++ +..-.++|-+.. ++.++
T Consensus 121 ~lvLd~v~dP~NlGaI~Rta~a~G~~~vil~~~-~~~~~~~~-~----------v~r-as-~Ga~~~l~i~~~--~l~~~ 184 (277)
T 3nk6_A 121 VVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDS-DLATIADR-R----------LLR-AS-RGYVFSLPVVLA--DREEA 184 (277)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHTTCSEEEEESC-CCSCTTCH-H----------HHH-HT-TTCTTTSCEEEC--CHHHH
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCCEEEEcCC-CCcCCCCH-H----------HHH-Hh-CChhhcCeEEEE--CHHHH
Confidence 777778889999999999999999999977542 33222221 1 222 22 333566776655 89988
Q ss_pred Hhcccc-cce-EEeccCCcccccccccCCCCCceEEEecCCC-CCCHHHHHHH
Q psy15223 1491 LISKIS-CAR-ILLSPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENLA 1540 (2492)
Q Consensus 1491 l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEG-G~s~~E~~~~ 1540 (2492)
+..... ... +..+..+...+... ...+++++|++|.|| |+|++.++..
T Consensus 185 l~~lk~~g~~v~~~~~~~~~~~~~~--~~~~~~~alv~GnE~~Gls~~~~~~~ 235 (277)
T 3nk6_A 185 VSFLRDNDIALMVLDTDGDLGVKDL--GDRADRMALVFGSEKGGPSGLFQEAS 235 (277)
T ss_dssp HHHHHHTTCCEEEECTTCSEEGGGG--GGCCSCCEEEEEBTTTBSCHHHHHHC
T ss_pred HHHHHhcCCeEEEEecCCCcchhhh--hccCCCEEEEECCCCCCCCHHHHHhC
Confidence 765322 222 23344443332220 234678999999998 9999887754
No 259
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=37.61 E-value=86 Score=35.16 Aligned_cols=108 Identities=11% Similarity=0.128 Sum_probs=65.1
Q ss_pred eeEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHH
Q psy15223 279 ITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNW 358 (2492)
Q Consensus 279 i~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~ 358 (2492)
+.++-.+-.+..+--|++-|.-+|++.++.+.......+ +..++. ...-++| +....++.++
T Consensus 24 ~vvLd~~~dp~NlGaI~Rta~a~G~~~v~l~~~~~~~~~----------------~~r~s~-Ga~~~l~-~~~~~~l~~~ 85 (194)
T 1v2x_A 24 TVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPT----------------FNETSG-GSHKWVY-LRVHPDLHEA 85 (194)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCC----------------CCSSCS-SGGGTSE-EEEESSHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHhCCCEEEEeCCCCCchh----------------hHHHCC-CChheee-eEecCCHHHH
Confidence 445557788999999999999999999988754322100 000111 1123354 5556788888
Q ss_pred Hhhccc-ccEEEe-ccC-CcccccccccCCCCCceEEEeCCCC-CCCHHHHHH
Q psy15223 359 LISKIS-CARILL-SPR-GRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENL 407 (2492)
Q Consensus 359 l~~~~~-~~~~l~-~~~-~~~~~~~~~~~~~~~~v~~~iGPEG-Gfs~~E~~~ 407 (2492)
+..... +..++. +.. +...+.. ...++++.+++|.|| |+++++++.
T Consensus 86 l~~l~~~g~~i~~~~~~~~~~~~~~---~~~~~~~alv~G~E~~Gls~~~l~~ 135 (194)
T 1v2x_A 86 FRFLKERGFTVYATALREDARDFRE---VDYTKPTAVLFGAEKWGVSEEALAL 135 (194)
T ss_dssp HHHHHHTTCEEEEECCCTTSEEGGG---SCTTSSEEEEECBTTTBSCHHHHHH
T ss_pred HHHHHHCCCEEEEEecCCCCccHhH---cccCCCeEEEECCCCCCCCHHHHHh
Confidence 764322 222332 222 2222222 223467999999999 999998765
No 260
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=36.68 E-value=1.1e+02 Score=36.42 Aligned_cols=110 Identities=13% Similarity=0.046 Sum_probs=69.9
Q ss_pred eeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCChhH
Q psy15223 1410 VKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNN 1489 (2492)
Q Consensus 1410 ~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~~~ 1489 (2492)
-..++-.+-.+..+=-+++-|.-+|++.|+.... + ..+ +.+ .++ |+. ..-.++|-+. .++.+
T Consensus 117 ~~lvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~--~-~~~-~~~----------v~r-as~-Ga~~~l~~~~--~~l~~ 178 (274)
T 1ipa_A 117 LILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGG--V-DLY-SPQ----------VIR-NST-GVVFSLRTLA--ASESE 178 (274)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESC--C-CTT-CHH----------HHH-HTT-TGGGTSCEEE--ECHHH
T ss_pred eEEEEeCCCCcchHHHHHHHHHhhccCEEEEeCC--c-CcC-CHH----------HHH-HcC-ChhhcceeEe--CCHHH
Confidence 4566667888899999999999999999987554 2 122 211 222 322 2344688765 78888
Q ss_pred HHhcccc-cceEE-eccCCcccccccccCCCCCceEEEecCCC-CCCHHHHHHH
Q psy15223 1490 WLISKIS-CARIL-LSPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENLA 1540 (2492)
Q Consensus 1490 ~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~iGPEG-G~s~~E~~~~ 1540 (2492)
++..... ...++ .+..+...+.. .+.+++++|++|.|| |+|++.++..
T Consensus 179 ~l~~l~~~g~~i~~~~~~~~~~~~~---~~~~~~~alv~G~E~~Gls~~~~~~~ 229 (274)
T 1ipa_A 179 VLDWIKQHNLPLVATTPHAEALYWE---ANLRPPVAIAVGPEHEGLRAAWLEAA 229 (274)
T ss_dssp HHHHHHHTTCCEEEECTTCSSBGGG---SCCCSSEEEEECCTTSCCCHHHHHHC
T ss_pred HHHHHHHcCCEEEEEeCCCCcchhh---cCCCCCEEEEECCCCcCCCHHHHHhC
Confidence 8765332 12233 33333332222 234678999999999 9999887764
No 261
>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824}
Probab=36.62 E-value=16 Score=43.37 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=32.8
Q ss_pred cCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCC
Q psy15223 11 LGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSP 52 (2492)
Q Consensus 11 ~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~ 52 (2492)
.|+|++++|..++ ..+++++..+| +|++.+||.||+.+
T Consensus 196 ~~~y~~~s~~~~~---~~~~~~~~~~~-dril~gSD~P~~~~ 233 (272)
T 3cjp_A 196 QNLYLDTSAYFST---FVLKIVINELP-LKCIFGTDMPFGDL 233 (272)
T ss_dssp TTEEEECTTCSCH---HHHHHHHHHST-TTEECCCCTTSSCH
T ss_pred CCEEEEecccccH---HHHHHHHHhCC-CeEEEeCCCCCCCh
Confidence 6999999998775 45888888889 99999999999754
No 262
>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15
Probab=35.71 E-value=16 Score=44.20 Aligned_cols=45 Identities=20% Similarity=0.387 Sum_probs=38.1
Q ss_pred HHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCC
Q psy15223 4 VAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSP 52 (2492)
Q Consensus 4 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~ 52 (2492)
.+.++++ |+|++++|..+ ...+++++..+|.+|++.+||.||+.+
T Consensus 228 ~~~~~~~-n~y~~~s~~~~---~~~l~~~~~~~g~drll~gSD~P~~~~ 272 (307)
T 2f6k_A 228 DVYDVMH-HVYFDVAGAVL---PRQLPTLMSLAQPEHLLYGSDIPYTPL 272 (307)
T ss_dssp CHHHHHH-HSEEECCSSCT---TTHHHHHTTTSCGGGEECCCCTTTSCH
T ss_pred cHHHHHh-heEEeccCCCC---HHHHHHHHHhcCcccEEEecCCCCCCc
Confidence 3566777 99999999765 456889999999999999999999864
No 263
>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A*
Probab=34.91 E-value=18 Score=44.11 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=37.8
Q ss_pred HHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCC
Q psy15223 5 AREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLS 51 (2492)
Q Consensus 5 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~ 51 (2492)
++++++.|+|++++|..+ ...+++++..++.+|++.+||.||+.
T Consensus 249 ~~~~~~~n~y~~~sg~~~---~~~~~~~~~~~g~dril~gSD~P~~~ 292 (327)
T 2dvt_A 249 FMDYFNENFHITTSGNFR---TQTLIDAILEIGADRILFSTDWPFEN 292 (327)
T ss_dssp HHHHHHHHEEEECTTCCC---HHHHHHHHTTTCGGGEECCCCTTTSC
T ss_pred HHHHHhhcEEEeccCCCC---HHHHHHHHHHhCcccEEEecCCCCcc
Confidence 467778899999999765 56689999999999999999999874
No 264
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A
Probab=33.41 E-value=26 Score=42.14 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=36.4
Q ss_pred cCcEEEeccccc-ccccHHHHHHhhhcccCccccccCCCCCCC
Q psy15223 11 LGFYISFSGIVT-FKNSKILQKVMGSISLKNMLIETDSPYLSP 52 (2492)
Q Consensus 11 ~g~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~etD~~~M~~ 52 (2492)
.|+|++++|.++ ++++..+++++...+.+|++.+||.||+.+
T Consensus 207 ~nvy~~~Sg~~~~~~~~~~~~~~~~~~g~drllfgSD~P~~~~ 249 (291)
T 3irs_A 207 PNLYLSPDMYLYNLPGHADFIQAANSFLADRMLFGTAYPMCPL 249 (291)
T ss_dssp TTEEEECGGGGSSSTTHHHHHHHHTTGGGGTBCCCCCBTSSCH
T ss_pred CCeEecHHHHhccCCCHHHHHHHHHHhCcceEEEecCCCCCCH
Confidence 489999999887 455667888999999999999999999864
No 265
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=32.93 E-value=1.6e+02 Score=35.01 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=69.9
Q ss_pred eeEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHH
Q psy15223 279 ITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNW 358 (2492)
Q Consensus 279 i~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~ 358 (2492)
+.++-.+-.+..+--|++-|.-+|++.|+.... +++.-++ . | ++.|+. ..--++|-... ++.++
T Consensus 121 ~lvLd~v~dP~NlGaI~Rta~a~G~~~vil~~~-~~~~~~~-~----~-------v~ras~-Ga~~~l~i~~~--~l~~~ 184 (277)
T 3nk6_A 121 VVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDS-DLATIAD-R----R-------LLRASR-GYVFSLPVVLA--DREEA 184 (277)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHTTCSEEEEESC-CCSCTTC-H----H-------HHHHTT-TCTTTSCEEEC--CHHHH
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCCEEEEcCC-CCcCCCC-H----H-------HHHHhC-ChhhcCeEEEE--CHHHH
Confidence 677779999999999999999999999977642 3322222 1 1 222332 23456666554 89888
Q ss_pred Hhhcc--cccEEEeccCCcccccccccCCCCCceEEEeCCCC-CCCHHHHHH
Q psy15223 359 LISKI--SCARILLSPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENL 407 (2492)
Q Consensus 359 l~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEG-Gfs~~E~~~ 407 (2492)
+.... +...+-.+.++...+... ...++++.+++|.|| |++++.++.
T Consensus 185 l~~lk~~g~~v~~~~~~~~~~~~~~--~~~~~~~alv~GnE~~Gls~~~~~~ 234 (277)
T 3nk6_A 185 VSFLRDNDIALMVLDTDGDLGVKDL--GDRADRMALVFGSEKGGPSGLFQEA 234 (277)
T ss_dssp HHHHHHTTCCEEEECTTCSEEGGGG--GGCCSCCEEEEEBTTTBSCHHHHHH
T ss_pred HHHHHhcCCeEEEEecCCCcchhhh--hccCCCEEEEECCCCCCCCHHHHHh
Confidence 76432 222233344443333320 123467899999998 999998775
No 266
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=32.14 E-value=1.4e+02 Score=35.44 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=68.2
Q ss_pred eeeEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhH
Q psy15223 278 TITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNN 357 (2492)
Q Consensus 278 ~i~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~ 357 (2492)
.+.++-.+-.+..+--|++-|.-+|++.|+.... + ..++ . | ++.|+.=+ --++|-+. .++.+
T Consensus 117 ~~lvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~--~-~~~~-~----~-------v~ras~Ga-~~~l~~~~--~~l~~ 178 (274)
T 1ipa_A 117 LILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGG--V-DLYS-P----Q-------VIRNSTGV-VFSLRTLA--ASESE 178 (274)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESC--C-CTTC-H----H-------HHHHTTTG-GGTSCEEE--ECHHH
T ss_pred eEEEEeCCCCcchHHHHHHHHHhhccCEEEEeCC--c-CcCC-H----H-------HHHHcCCh-hhcceeEe--CCHHH
Confidence 3556668889999999999999999999987544 2 2222 1 1 22333322 33566654 78888
Q ss_pred HHhhccc--ccEEEeccCCcccccccccCCCCCceEEEeCCCC-CCCHHHHHH
Q psy15223 358 WLISKIS--CARILLSPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENL 407 (2492)
Q Consensus 358 ~l~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEG-Gfs~~E~~~ 407 (2492)
++..... ...+-.+.++...+.. ...++++.+++|.|| |++++.++.
T Consensus 179 ~l~~l~~~g~~i~~~~~~~~~~~~~---~~~~~~~alv~G~E~~Gls~~~~~~ 228 (274)
T 1ipa_A 179 VLDWIKQHNLPLVATTPHAEALYWE---ANLRPPVAIAVGPEHEGLRAAWLEA 228 (274)
T ss_dssp HHHHHHHTTCCEEEECTTCSSBGGG---SCCCSSEEEEECCTTSCCCHHHHHH
T ss_pred HHHHHHHcCCEEEEEeCCCCcchhh---cCCCCCEEEEECCCCcCCCHHHHHh
Confidence 8764321 2222233333322222 223467999999999 999998765
No 267
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=30.73 E-value=58 Score=35.81 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=63.8
Q ss_pred eEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCChhHH
Q psy15223 1411 KNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNW 1490 (2492)
Q Consensus 1411 ~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~~~~ 1490 (2492)
.-++-.+-.+..+=-+++-|.-+|++.++.+.. ++..-+...+ .++.| .....++|.+....++.++
T Consensus 12 ~vvL~~~~dp~N~Gai~Rta~a~G~~~l~lv~~-~~~d~~~~~~----------~~r~a--~Ga~~~l~~~~~~~~l~~~ 78 (173)
T 3kty_A 12 RFIMTQPSHPGNVGSAARAIKTMGFGELVLVAP-RFPDMTAQPE----------AVALA--SGALDVLERAAVHDTLEEA 78 (173)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHTTCCCEEEESC-SSTTGGGSHH----------HHHHH--TTCHHHHHTCEEESCHHHH
T ss_pred EEEEeCCCCCCcHHHHHHHHHHcCCCEEEEeCC-CccccCCCHH----------HHHHc--CCHHHhhchheecCCHHHH
Confidence 345556778889999999999999999987653 3321111111 22222 1122345544334578888
Q ss_pred HhcccccceEEe-ccCCcc----cc------cccc---cCCCCCceEEEecCCC-CCCHHHHHHH
Q psy15223 1491 LISKISCARILL-SPRGRK----KL------SCWA---NNQSPQEVELLIGPEG-GFTEKEENLA 1540 (2492)
Q Consensus 1491 l~~~~~~~~~~~-~~~~~~----~~------~~~~---~~~~~~~~~l~iGPEG-G~s~~E~~~~ 1540 (2492)
++... .++. +..+.. .. ..+. .....++++|++|.|| |+|+++++..
T Consensus 79 l~~~~---~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfG~E~~GLs~~~l~~~ 140 (173)
T 3kty_A 79 LAPVT---LAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELC 140 (173)
T ss_dssp HTTCS---EEEEEECC-----CCCEEHHHHHHHHHHHHHHSSSCCEEEEECCCC-CCCHHHHHTS
T ss_pred HHhCC---eEEEEccccccCCCCccCHHHHHHHHhhhhccccCCCEEEEECCCCCCCCHHHHHhC
Confidence 77532 2222 222110 00 0111 1224578999999986 9999988753
No 268
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=29.29 E-value=1e+02 Score=36.05 Aligned_cols=110 Identities=12% Similarity=0.162 Sum_probs=65.2
Q ss_pred eeEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHH
Q psy15223 279 ITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNW 358 (2492)
Q Consensus 279 i~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~ 358 (2492)
+.++-.+-.+..+--|++-|.-+|++.|+. +.++...++.+ .++ |+.=+ --++|-. ...++.++
T Consensus 107 ~lvLd~v~dp~NlGaI~Rta~a~G~~~vil--~~~~~~~~~~~-----------~~r-as~Ga-~~~l~~~-~~~~~~~~ 170 (253)
T 1gz0_A 107 LLILDGVTDPHNLGACLRSADAAGVHAVIV--PKDRSAQLNAT-----------AKK-VACGA-AESVPLI-RVTNLART 170 (253)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHTCSEEEE--ESSSSCCCCHH-----------HHH-HHTTH-HHHSCEE-EESCHHHH
T ss_pred EEEEeCCCCcCcHHHHHHHHHHhCCCEEEE--eCCCCCCCCHH-----------HHh-hhcch-heEEEEE-EeCCHHHH
Confidence 455558889999999999999999999965 44443333311 222 22212 2245543 33577777
Q ss_pred Hhhccc-ccEEEe-ccCCcccccccccCCCCCceEEEeCCCC-CCCHHHHHH
Q psy15223 359 LISKIS-CARILL-SPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENL 407 (2492)
Q Consensus 359 l~~~~~-~~~~l~-~~~~~~~~~~~~~~~~~~~v~~~iGPEG-Gfs~~E~~~ 407 (2492)
+..... +..++. +.++...+.. ...++++.+++|.|| |++++.++.
T Consensus 171 l~~l~~~g~~i~~~~~~~~~~~~~---~~~~~~~alv~G~E~~Gls~~~~~~ 219 (253)
T 1gz0_A 171 MRMLQEENIWIVGTAGEADHTLYQ---SKMTGRLALVMGAEGEGMRRLTREH 219 (253)
T ss_dssp HHHHHHTTCEEEEECTTCSEEGGG---SCCCSSEEEEEEBTTTBSCHHHHHT
T ss_pred HHHHHHCCCEEEEEECCCCcchhh---ccCCCCEEEEECCCCcCcCHHHHHh
Confidence 754322 223332 2233322222 223467999999999 999988764
No 269
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=28.35 E-value=1.4e+02 Score=35.73 Aligned_cols=111 Identities=14% Similarity=0.043 Sum_probs=68.5
Q ss_pred eEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCChhHH
Q psy15223 1411 KNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNW 1490 (2492)
Q Consensus 1411 ~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~~~~ 1490 (2492)
..++-.+-.+..+=-+++-|.-+|++.|+... .+...+.. + .++ | -+..-.++|-+. ..++.++
T Consensus 128 ~lvLd~i~dP~NlGaIiRta~a~G~~~vil~~--~~~d~~~~-k----------v~r-a-s~Ga~~~l~i~~-~~~l~~~ 191 (287)
T 1x7o_A 128 GVLFDRPTSPGNIGSIIRSADALGAHGLIVAG--HAADVYDP-K----------SVR-S-STGSLFSLPAVR-VPSPGEV 191 (287)
T ss_dssp EEEEESCSCHHHHHHHHHHHHHTTCCEEEEES--SSSCTTSH-H----------HHH-H-TTTGGGTSCEEE-ESSHHHH
T ss_pred EEEEeCCCCcchHHHHHHHhHhcccCEEEEEC--CCcCccCH-H----------HHh-h-hcCcceeeeEEE-eCCHHHH
Confidence 45666678889999999999999999997654 33222221 1 222 2 222234577654 5678887
Q ss_pred Hhcc---cc-cce--EE-eccCCcccccccccCCCCCceEEEecCCC-CCCHHHHHHH
Q psy15223 1491 LISK---IS-CAR--IL-LSPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENLA 1540 (2492)
Q Consensus 1491 l~~~---~~-~~~--~~-~~~~~~~~~~~~~~~~~~~~~~l~iGPEG-G~s~~E~~~~ 1540 (2492)
+... .. ... ++ .+..+...+.. ...+++++|++|.|| |+|++.++..
T Consensus 192 l~~l~~~~~~g~~~~i~~~~~~~~~~~~~---~~~~~~~alV~GnE~~Gls~~~~~~~ 246 (287)
T 1x7o_A 192 MDWVEARRAAGTPIVLVGTDEHGDCDVFD---FDFTQPTLLLIGNETAGLSNAWRTLC 246 (287)
T ss_dssp HHHHHHHHHHTCCCEEEEECTTCSEEGGG---SCTTSCEEEEECBTTTBSCHHHHHHC
T ss_pred HHHHHHHHhcCCceEEEEEECCCCccHhh---cCCCCCEEEEECCCCCCCCHHHHHhC
Confidence 7644 22 122 33 33333322222 234678999999998 9999887764
No 270
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=25.18 E-value=1.7e+02 Score=31.76 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=59.9
Q ss_pred EEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCChhHHHhc
Q psy15223 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLIS 1493 (2492)
Q Consensus 1414 ~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~~~~l~~ 1493 (2492)
+-.+-.+..+=-++|-|.-+|++.+ .+ +.++. .+...+ ..+ |+.-+ ..++|- ....++.+++..
T Consensus 9 L~~~~dp~NlGaI~Rta~a~G~~~v-iv-~~~~~-~~~~~~----------~~r-as~g~-~~~~~~-~~~~~l~~~l~~ 72 (165)
T 3n4j_A 9 LFEPEIPPNTGNIIRLCANTGCQLH-LI-KPLGF-TWDDKR----------LRR-AGLDY-HEFADI-KHHHDYQAFLDS 72 (165)
T ss_dssp EESCCCHHHHHHHHHHHHHHTCEEE-EE-SCCSS-CCCHHH----------HHH-TTCCH-HHHTTC-EEESSHHHHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHcCCeEE-EE-CCCCC-CCccHH----------HHH-hccCc-eeecCe-EEeCCHHHHHHH
Confidence 3446677888899999999999544 34 44442 222211 111 21100 012453 334578888765
Q ss_pred cc----ccceE-EeccCCcccccccccCCCCCceEEEecCCC-CCCHHHHHH
Q psy15223 1494 KI----SCARI-LLSPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENL 1539 (2492)
Q Consensus 1494 ~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~iGPEG-G~s~~E~~~ 1539 (2492)
.. ....+ ..+..+...+. ....+++++|++|.|| |++++.++.
T Consensus 73 lk~~~~~g~~i~~~~~~~~~~~~---~~~~~~~~alv~G~E~~Gls~~~l~~ 121 (165)
T 3n4j_A 73 EKLDSTQPARLFALTTKGTPAHS---AVSYQANDYLLFGPETRGLPAYILDA 121 (165)
T ss_dssp TTCCSSSCTTEEEECTTCSSBTT---TSCCCTTEEEEECCTTTCSCHHHHTT
T ss_pred HHhhccCCCEEEEEEcCCCcchh---hccCCCCeEEEECCCCCCCCHHHHhh
Confidence 42 12233 33333322222 2234578999999996 999988776
No 271
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=24.72 E-value=1.8e+02 Score=34.75 Aligned_cols=110 Identities=16% Similarity=0.039 Sum_probs=67.0
Q ss_pred eeEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHH
Q psy15223 279 ITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNW 358 (2492)
Q Consensus 279 i~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~ 358 (2492)
+.++-.+-.+..+--|++-|.-+|++.|+... .+...++ . | ++. |+.=+ --++|-+. ..++.++
T Consensus 128 ~lvLd~i~dP~NlGaIiRta~a~G~~~vil~~--~~~d~~~-~----k------v~r-as~Ga-~~~l~i~~-~~~l~~~ 191 (287)
T 1x7o_A 128 GVLFDRPTSPGNIGSIIRSADALGAHGLIVAG--HAADVYD-P----K------SVR-SSTGS-LFSLPAVR-VPSPGEV 191 (287)
T ss_dssp EEEEESCSCHHHHHHHHHHHHHTTCCEEEEES--SSSCTTS-H----H------HHH-HTTTG-GGTSCEEE-ESSHHHH
T ss_pred EEEEeCCCCcchHHHHHHHhHhcccCEEEEEC--CCcCccC-H----H------HHh-hhcCc-ceeeeEEE-eCCHHHH
Confidence 55566888999999999999999999998654 3322222 1 1 222 22222 23466543 5688888
Q ss_pred Hhhc---cc-c-c--EEEeccCCcccccccccCCCCCceEEEeCCCC-CCCHHHHHH
Q psy15223 359 LISK---IS-C-A--RILLSPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENL 407 (2492)
Q Consensus 359 l~~~---~~-~-~--~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEG-Gfs~~E~~~ 407 (2492)
+... .. + . .+-.+.++...+.. ...++++.+++|.|| |++++.++.
T Consensus 192 l~~l~~~~~~g~~~~i~~~~~~~~~~~~~---~~~~~~~alV~GnE~~Gls~~~~~~ 245 (287)
T 1x7o_A 192 MDWVEARRAAGTPIVLVGTDEHGDCDVFD---FDFTQPTLLLIGNETAGLSNAWRTL 245 (287)
T ss_dssp HHHHHHHHHHTCCCEEEEECTTCSEEGGG---SCTTSCEEEEECBTTTBSCHHHHHH
T ss_pred HHHHHHHHhcCCceEEEEEECCCCccHhh---cCCCCCEEEEECCCCCCCCHHHHHh
Confidence 7543 21 1 2 23333333322222 223467999999998 999998765
No 272
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=22.62 E-value=16 Score=35.34 Aligned_cols=41 Identities=24% Similarity=0.688 Sum_probs=28.0
Q ss_pred CCCCccccccccccCCCCCCCCcchhhhhhcc---CCccchhHHH
Q psy15223 1307 YKKCNRCWHYQADVGERDDYPDLCNRCFNNLF---EPCAMCAGAI 1348 (2492)
Q Consensus 1307 ~~kC~RCw~~~~~v~~~~~~~~LC~RC~~~v~---~~c~mC~~a~ 1348 (2492)
..-|-.||--....=.=++| +||-+|...+. +-|+-|...|
T Consensus 28 ~~nCKsCWf~~k~LV~C~dH-YLCl~CLtlmL~~SdrCpIC~~pL 71 (99)
T 2ko5_A 28 PQFCKSCWFENKGLVECNNH-YLCLNCLTLLLSVSNRCPICKMPL 71 (99)
T ss_dssp CCCCCSSCSCCSSEEECSSC-EEEHHHHHHTCSSSSEETTTTEEC
T ss_pred cccChhhccccCCeeeecch-hhHHHHHHHHHhhccCCcccCCcC
Confidence 36899999654433121222 89999988874 8899997654
No 273
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=22.51 E-value=2.7e+02 Score=30.14 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=61.5
Q ss_pred eEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHH
Q psy15223 280 TLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWL 359 (2492)
Q Consensus 280 ~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l 359 (2492)
.++-.+-.+..+--|+|-|.-+|++.++ + ..++. .+... | +..|+.-+ .-++| +....++.+++
T Consensus 7 vvL~~~~dp~NlGaI~Rta~a~G~~~vi-v-~~~~~-~~~~~----~-------~~ras~g~-~~~~~-~~~~~~l~~~l 70 (165)
T 3n4j_A 7 IVLFEPEIPPNTGNIIRLCANTGCQLHL-I-KPLGF-TWDDK----R-------LRRAGLDY-HEFAD-IKHHHDYQAFL 70 (165)
T ss_dssp EEEESCCCHHHHHHHHHHHHHHTCEEEE-E-SCCSS-CCCHH----H-------HHHTTCCH-HHHTT-CEEESSHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHcCCeEEE-E-CCCCC-CCccH----H-------HHHhccCc-eeecC-eEEeCCHHHHH
Confidence 3444777889999999999999996554 3 33442 22211 1 11121110 01233 33456888887
Q ss_pred hhcc-----cccEEEeccCCcccccccccCCCCCceEEEeCCCC-CCCHHHHHH
Q psy15223 360 ISKI-----SCARILLSPRGRKKLSCWANNQSPQEVELLIGPEG-GFTEKEENL 407 (2492)
Q Consensus 360 ~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEG-Gfs~~E~~~ 407 (2492)
.... +...+-.+.++...+.. ...++++.+++|.|| |++++.++.
T Consensus 71 ~~lk~~~~~g~~i~~~~~~~~~~~~~---~~~~~~~alv~G~E~~Gls~~~l~~ 121 (165)
T 3n4j_A 71 DSEKLDSTQPARLFALTTKGTPAHSA---VSYQANDYLLFGPETRGLPAYILDA 121 (165)
T ss_dssp HHTTCCSSSCTTEEEECTTCSSBTTT---SCCCTTEEEEECCTTTCSCHHHHTT
T ss_pred HHHHhhccCCCEEEEEEcCCCcchhh---ccCCCCeEEEECCCCCCCCHHHHhh
Confidence 6542 22333333333322222 223467899999996 999988765
No 274
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=21.23 E-value=70 Score=37.92 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=31.8
Q ss_pred CCCCC-CHHHHHHHHHcCCeEeecCCccceeeccchhh
Q psy15223 1528 PEGGF-TEKEENLAYECGVIILSLGKRILRTETASLVA 1564 (2492)
Q Consensus 1528 PEGG~-s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~ 1564 (2492)
.|||+ |++++..+.++|+..|-.|.-+.|++-..-+.
T Consensus 225 aesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~~~ 262 (272)
T 3tsm_A 225 GESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAAT 262 (272)
T ss_dssp EESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHHHH
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHHHH
Confidence 48999 99999999999999999999999988655433
No 275
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=21.02 E-value=1e+02 Score=36.31 Aligned_cols=112 Identities=9% Similarity=0.051 Sum_probs=0.0
Q ss_pred eEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCChhHH
Q psy15223 1411 KNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNW 1490 (2492)
Q Consensus 1411 ~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~~~~ 1490 (2492)
.-++-.+-.+..+=-+++-|.-+|++.| +.+.++...+.. -++.|+.=+ ..++|-+.. .++.++
T Consensus 105 ~lvLd~v~dp~NlGaI~Rta~a~G~~~v--il~~~~~~~~~~------------~v~ras~Ga-~~~l~~~~~-~~l~~~ 168 (257)
T 2i6d_A 105 TLLLDGVQDPGNVGTILRTADWFGIRHV--WLGTGSADVFSP------------KVVQASMGA-LARVQPTPL-KNTVDT 168 (257)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHTCCEE--EECTTCCCTTSH------------HHHHTSTTG-GGTCEEEEC-SCHHHH
T ss_pred EEEEECCCCcchHHHHHHHHHHhCCCEE--EEcCCCCCcCCH------------HHheecCCc-ceeeeEEEe-CCHHHH
Q ss_pred HhcccccceEEeccCCcccccccccC--CCCCceEEEecCCC-CCCHHHHHH
Q psy15223 1491 LISKISCARILLSPRGRKKLSCWANN--QSPQEVELLIGPEG-GFTEKEENL 1539 (2492)
Q Consensus 1491 l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~iGPEG-G~s~~E~~~ 1539 (2492)
+.........++.-..... ..+... ..+++++|++|.|| |+|++.++.
T Consensus 169 l~~l~~~g~~i~~~~~~~~-~~~~~~~~~~~~~~alv~GnE~~Gls~~~~~~ 219 (257)
T 2i6d_A 169 LAYFRRQGIPVYGAFLDGQ-SLYEAPLPNFTEPAILVLGSEGRGISPEVAAE 219 (257)
T ss_dssp HHHHHHTTCCEEEEEEEEE-ETTTSCCCCTTSCEEEEEEBTTTBSCHHHHTT
T ss_pred HHHHHHCCCEEEEEECCCC-ccHHHhhhCcCCCEEEEECCCCCCCCHHHHHh
No 276
>2qpx_A Predicted metal-dependent hydrolase of the TIM-BA; YP_805737.1, putative metal-dependent hydrolase; HET: KCX MSE; 1.40A {Lactobacillus casei}
Probab=20.48 E-value=56 Score=40.78 Aligned_cols=47 Identities=11% Similarity=0.192 Sum_probs=37.9
Q ss_pred HHHHHHH--cCcEEEeccccccccc----HHHHHHhhhcccCccccccCCCCCC
Q psy15223 4 VAREIIE--LGFYISFSGIVTFKNS----KILQKVMGSISLKNMLIETDSPYLS 51 (2492)
Q Consensus 4 ~~~~~~~--~g~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~etD~~~M~ 51 (2492)
++..+++ .++|++++| +++.+. ..+++++...|.+|++.+||.|++.
T Consensus 271 ~~~~l~~~~~nvy~d~s~-~~~~~~~~~~~~l~~l~~~~g~dRiLfGSD~P~~~ 323 (376)
T 2qpx_A 271 EAGYLASVFPNLYFDISL-LDNLGPSGASRVFNEAVELAPYTRILFASDASTYP 323 (376)
T ss_dssp HHHHHHHHSTTEEEECTT-HHHHSGGGHHHHHHHHTSSSCGGGEECCCCCCBSH
T ss_pred HHHHHHHhCCCEEEeccc-ccccChhhHHHHHHHHHHhcCCCCEEEECCCCccc
Confidence 3555665 699999999 766542 6689999999999999999999973
Done!