RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15223
(2492 letters)
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 1399 bits (3625), Expect = 0.0
Identities = 461/930 (49%), Positives = 629/930 (67%), Gaps = 48/930 (5%)
Query: 1570 GELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDII 1629
L KREP +K+W+E +Y +IR+A+ +PKFILHDGPPYANGDIHIGHA+NKILKDII
Sbjct: 19 ANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDII 78
Query: 1630 VKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK---NLSPIEIQNKARALAYEKIEQQK 1686
VK M GFDA YVPG+DCHG+PIE+++EK GK LS E + K R A E+++ Q+
Sbjct: 79 VKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQR 138
Query: 1687 MDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEA 1746
DF RLG+LG+WDN Y TMDF EAN +RA G + KKGY+Y GLKPV WC DC SALAEA
Sbjct: 139 EDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEA 198
Query: 1747 EIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHP 1806
E+EY K SIYV F + K+ + F +VIWT+TPWT+PANQA+ VHP
Sbjct: 199 EVEYHDKTSPSIYVAFPVVD-GKLAAAF-------KDASLVIWTTTPWTLPANQAIAVHP 250
Query: 1807 EFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF-KGNIIGICKGIKLSKINFFHPLSNID 1865
EFDY LV ++ + LI+A +LV+S L++FG+ ++ KG +L + HP
Sbjct: 251 EFDYVLVEVEGE---KLIVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPF---- 303
Query: 1866 INYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFIS 1925
Y+R SP+ LGD++T+D+GTG+VH+AP +G +D+++ +K + +++NPV DDG +
Sbjct: 304 --YDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGL---EVLNPVDDDGRYTE 358
Query: 1926 TLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMD 1985
PLF G+ ++KA+ I L++ L E HSY HCWR K P+I+R T QWFI+MD
Sbjct: 359 EAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMD 418
Query: 1986 KIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHK 2045
K K LRE A+ AI K+K+ P+WGK+R++SM+ NRPDW ISRQR WGVPI F HK
Sbjct: 419 K------KGLREQALKAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHK 472
Query: 2046 KSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGIT 2105
++G+LHP T ELIE +AK E GI+ W LD KE L D+A Y+K D LDVWFDSG +
Sbjct: 473 ETGELHP-TPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSS 531
Query: 2106 HQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSK 2165
H V+ + +L +PADLYLEGSDQHRGWF SSLLTS+ APYK +LTHGF VD K
Sbjct: 532 HAAVLE--QRPELGYPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGK 589
Query: 2166 GKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTL 2225
G+KMSKS GN+I PQ + +GA+ILRLWVASTDYS D+ IS+EIL +V E YRRIRNTL
Sbjct: 590 GRKMSKSLGNVIDPQDVIKKYGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTL 649
Query: 2226 RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 2285
RFLL N +DF+P + + +++E+D++A+ + LQ+EIL Y Y+FH + KL +C
Sbjct: 650 RFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFC 709
Query: 2286 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFS 2345
S DL +FYLDI+KDRLYT +S ARRSAQT+++HI ++L+R ++PILSFT+EE W
Sbjct: 710 SVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLP 769
Query: 2346 DKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSL 2405
E E++F + ++P++ + ++LL K+ L ++R +V + LE+ R +IGSSL
Sbjct: 770 G-----EREESVFLEEWPEVPELADDEELLAKWEELLEVRDEVNKALEEARKEKVIGSSL 824
Query: 2406 QAEIILKINKLDFEILNEFGEELKFFLLTSSVSL-------FQIKNLSEECIIIKPSIYK 2458
+AE+ L + +L G+EL+F L+ S V + + + + ++ + +
Sbjct: 825 EAEVTLYADA---ALLESLGDELRFLLIVSQVEVADGPAAAAAAEEVEGLAVKVEKAEGE 881
Query: 2459 KCNRCWHYQADVGERDDYPDLCNRCFNNLF 2488
KC RCWHY+ DVG ++P LC RC +N+
Sbjct: 882 KCERCWHYREDVGSDAEHPTLCGRCVSNVE 911
Score = 1357 bits (3516), Expect = 0.0
Identities = 452/915 (49%), Positives = 618/915 (67%), Gaps = 49/915 (5%)
Query: 437 NGVWGEI-KASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPG 495
N ++ +I +A+ +PKFILHDGPPYANGDIHIGHA+NKILKDIIVK M GFDA YVPG
Sbjct: 35 NDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPG 94
Query: 496 YDCHGMPIEIQIEKLYGK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSY 552
+DCHG+PIE+++EK GK LS E + K R A E+++ Q+ DF RLG+LG+WDN Y
Sbjct: 95 WDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPY 154
Query: 553 KTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGF 612
TMDF EAN +RA G + KKGY+Y GLKPV WC DC SALAEAE+EY K SIYV F
Sbjct: 155 LTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIYVAF 214
Query: 613 SFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLL 672
+ K+ + F +VIWT+TPWT+PANQA+ VHPEFDY LV ++ +
Sbjct: 215 PVVD-GKLAAAF-------KDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGE---K 263
Query: 673 LILAFNLVKSCLKKFGF-KGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYIT 731
LI+A +LV+S L++FG+ ++ KG +L + HP Y+R SP+ LGD++T
Sbjct: 264 LIVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPF------YDRDSPVILGDHVT 317
Query: 732 VDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKL 791
+D+GTG+VH+AP +G +D+++ +K + +++NPV DDG + PLF G+ ++KA+
Sbjct: 318 LDAGTGLVHTAPGHGEDDYVVGQKYGL---EVLNPVDDDGRYTEEAPLFAGLFVFKANPK 374
Query: 792 ICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAIT 851
I L++ L E HSY HCWR K P+I+R T QWFI+MDK K LRE A+
Sbjct: 375 IIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDK------KGLREQALK 428
Query: 852 AINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELI 911
AI K+K+ P+WGK+R++SM+ NRPDW ISRQR WGVPI F HK++G+LHP T ELIE +
Sbjct: 429 AIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHP-TPELIEHV 487
Query: 912 AKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFP 971
AK E GI+ W LD KE L D+A Y+K D LDVWFDSG +H V+ + +L +P
Sbjct: 488 AKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLE--QRPELGYP 545
Query: 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQK 1031
ADLYLEGSDQHRGWF SSLLTS+ APYK +LTHGF VD KG+KMSKS GN+I PQ
Sbjct: 546 ADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQD 605
Query: 1032 LCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINI 1091
+ +GA+ILRLWVASTDYS D+ IS+EIL +V E YRRIRNTLRFLL N +DF+P +
Sbjct: 606 VIKKYGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDA 665
Query: 1092 IKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRL 1151
+ +++E+D++A+ + LQ+EIL Y Y+FH + KL +CS DL +FYLDI+KDRL
Sbjct: 666 VPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRL 725
Query: 1152 YTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQL 1211
YT +S ARRSAQT+++HI ++L+R ++PILSFT+EE W E E++F +
Sbjct: 726 YTDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPG-----EREESVFLEE 780
Query: 1212 HYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEIL 1271
++P++ + ++LL K+ L ++R +V + LE+ R +IGSSL+AE+ L + +L
Sbjct: 781 WPEVPELADDEELLAKWEELLEVRDEVNKALEEARKEKVIGSSLEAEVTLYADA---ALL 837
Query: 1272 NEFGEELKFFLLTSSVSL-------FQIKNLSEECIIIKPSIYKKCNRCWHYQADVGERD 1324
G+EL+F L+ S V + + + + ++ + +KC RCWHY+ DVG
Sbjct: 838 ESLGDELRFLLIVSQVEVADGPAAAAAAEEVEGLAVKVEKAEGEKCERCWHYREDVGSDA 897
Query: 1325 DYPDLCNRCFNNLFE 1339
++P LC RC +N+
Sbjct: 898 EHPTLCGRCVSNVEG 912
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 1089 bits (2820), Expect = 0.0
Identities = 402/945 (42%), Positives = 577/945 (61%), Gaps = 58/945 (6%)
Query: 1569 NGELSKREPGWIKKWQEKKIYHQIRKA-SINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
L K+EP +K W+E IY +IR+ + +PKF+LHDGPPYANG+IHIGHA+NKILKD
Sbjct: 17 RANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKD 76
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK------NLSPIEIQNKARALAYEK 1681
IIV++ M G+D YVPG+DCHG+PIE+++EK G + E + K R A E+
Sbjct: 77 IIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQ 136
Query: 1682 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKS 1741
+++QK F RLG+ G+W+N YKTMD E + AF +++KG +Y G KPV W C++
Sbjct: 137 VDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCET 196
Query: 1742 ALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQA 1801
ALAEAE+EY D SIYV F +K +N Y+VIWT+TPWT+PAN A
Sbjct: 197 ALAEAEVEYGDVKDPSIYVKF------PVKDEGLDENA-----YLVIWTTTPWTLPANLA 245
Query: 1802 LHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKG-NIIGICKGIKLSKINFFHP 1860
+ VHP+ DY LV + + LILA LV+S KK G + ++ KG +L + + HP
Sbjct: 246 IAVHPDLDYVLVEVNGE---KLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHP 302
Query: 1861 LSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDD 1920
D Y+R P+ LGD++T+D GTG+VH+AP +G ED+ + KK + +++NPV D+
Sbjct: 303 FY--DFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGL--LEVLNPVDDN 358
Query: 1921 GNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQW 1980
G + P + G+ + A+K I LK+ L E EHSY HCWR KTP+IYR T QW
Sbjct: 359 GRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQW 418
Query: 1981 FINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIA 2040
F+++DK+ R+ + INK+ + P WGK+R +M+ NRPDW ISRQR+WGVPI
Sbjct: 419 FVSVDKL--------RDKMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIP 470
Query: 2041 FFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLG---DDAVNYKKSNDTLD 2097
+ K++G++ T EL EL+ + +E GI+ W DI E L +D Y++ D LD
Sbjct: 471 VWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLD 530
Query: 2098 VWFDSGITHQTVIRGSHKKQLI-FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALL 2156
VWFDSG T V+ + AD YLEGSDQ RGWF+SSLLTS L APYK +L
Sbjct: 531 VWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVL 590
Query: 2157 THGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 2216
THGFV+D KG+KMSKS GN++ PQ + + +GA+ILRLWVAS+DY +DL S+EIL +V E
Sbjct: 591 THGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEILKQVRE 650
Query: 2217 TYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHM 2276
YR+IRNT RFLL N DF+P + + ++ E+D++ + + +L KE+ Y Y+FH
Sbjct: 651 VYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHK 710
Query: 2277 IVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFT 2336
+V L + SEDL ++YLDI+KDRLYT +S RR+AQT+++HI ++L+RL++PIL FT
Sbjct: 711 VVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFT 770
Query: 2337 SEEAWSIFSDKNFYIESGETIFTQLHYKL--PKVYNSKKLLYKYMILKKIRSKVMQKLEK 2394
+EE W + E++ + ++ + L ++ L K+R V + LE
Sbjct: 771 AEEIWQNLPGERKE----ESVHLEDWPEVDEELIDVEAALAARWEALLKLRDPVNKALEA 826
Query: 2395 IRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTSSVSL----------FQIKN 2444
R +IGSSL A++++ D E+L + L L+TS+V + +
Sbjct: 827 ARLEKVIGSSLNAKVVIYTE--DSELLYKLKPNLGKVLITSAVEVAKALEALAGAEAEEL 884
Query: 2445 LSEECIIIKP--SIYKKCNRCWHYQADVGERDDYPDLCNRCFNNL 2487
+ + + + + +KC RCWHY ++GE + LC RC +
Sbjct: 885 VDGDGVELTVEKAEGEKCPRCWHYDTELGEELEEEGLCRRCVRRI 929
Score = 1061 bits (2747), Expect = 0.0
Identities = 392/921 (42%), Positives = 563/921 (61%), Gaps = 57/921 (6%)
Query: 444 KASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPI 503
+ + +PKF+LHDGPPYANG+IHIGHA+NKILKDIIV++ M G+D YVPG+DCHG+PI
Sbjct: 43 ERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPI 102
Query: 504 EIQIEKLYGK------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDF 557
E+++EK G + E + K R A E++++QK F RLG+ G+W+N YKTMD
Sbjct: 103 ELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDP 162
Query: 558 LNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEP 617
E + AF +++KG +Y G KPV W C++ALAEAE+EY D SIYV F
Sbjct: 163 SYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKF----- 217
Query: 618 EKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAF 677
+K +N Y+VIWT+TPWT+PAN A+ VHP+ DY LV + + LILA
Sbjct: 218 -PVKDEGLDENA-----YLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGE---KLILAK 268
Query: 678 NLVKSCLKKFGFKG-NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGT 736
LV+S KK G + ++ KG +L + + HP D Y+R P+ LGD++T+D GT
Sbjct: 269 ALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFY--DFVYDRAFPVILGDHVTLDDGT 326
Query: 737 GIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYL 796
G+VH+AP +G ED+ + KK + +++NPV D+G + P + G+ + A+K I L
Sbjct: 327 GLVHTAPGHGEEDYEVGKKYGL--LEVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDL 384
Query: 797 KKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKI 856
K+ L E EHSY HCWR KTP+IYR T QWF+++DK+ R+ + INK+
Sbjct: 385 KEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKL--------RDKMLKEINKV 436
Query: 857 KFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIE 916
+ P WGK+R +M+ NRPDW ISRQR+WGVPI + K++G++ T EL EL+ + +E
Sbjct: 437 NWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVE 496
Query: 917 LNGIEIWQNLDIKEFLG---DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI-FPA 972
GI+ W DI E L +D Y++ D LDVWFDSG T V+ + A
Sbjct: 497 EKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPRENLKFPALFA 556
Query: 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKL 1032
D YLEGSDQ RGWF+SSLLTS L APYK +LTHGFV+D KG+KMSKS GN++ PQ +
Sbjct: 557 DFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDV 616
Query: 1033 CNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINII 1092
+ +GA+ILRLWVAS+DY +DL S+EIL +V E YR+IRNT RFLL N DF+P + +
Sbjct: 617 IDKYGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAV 676
Query: 1093 KISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLY 1152
++ E+D++ + + +L KE+ Y Y+FH +V L + SEDL ++YLDI+KDRLY
Sbjct: 677 LPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLY 736
Query: 1153 TTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLH 1212
T +S RR+AQT+++HI ++L+RL++PIL FT+EE W + E++ +
Sbjct: 737 TEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGERKE----ESVHLEDW 792
Query: 1213 YKL--PKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEI 1270
++ + L ++ L K+R V + LE R +IGSSL A++++ D E+
Sbjct: 793 PEVDEELIDVEAALAARWEALLKLRDPVNKALEAARLEKVIGSSLNAKVVIYTE--DSEL 850
Query: 1271 LNEFGEELKFFLLTSSVSL----------FQIKNLSEECIIIKP--SIYKKCNRCWHYQA 1318
L + L L+TS+V + + + + + + + +KC RCWHY
Sbjct: 851 LYKLKPNLGKVLITSAVEVAKALEALAGAEAEELVDGDGVELTVEKAEGEKCPRCWHYDT 910
Query: 1319 DVGERDDYPDLCNRCFNNLFE 1339
++GE + LC RC + E
Sbjct: 911 ELGEELEEEGLCRRCVRRIQE 931
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 945 bits (2446), Expect = 0.0
Identities = 383/949 (40%), Positives = 530/949 (55%), Gaps = 59/949 (6%)
Query: 1570 GELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDII 1629
L ++EP +W+E +Y ++R+ + RPKF+LHDGPPYANG+IHIGHA+NKILKD+I
Sbjct: 24 AGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVI 83
Query: 1630 VKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLY---GKN---LSPIEIQNKARALAYEKIE 1683
V+ M GFDA YVPG+DCHG+PIE +IE+ Y GKN + E + + R A I+
Sbjct: 84 VRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWID 143
Query: 1684 QQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSAL 1743
Q+ +F RLG+LG+WDN Y TMDF EA R FG KG +Y G KPV W ++AL
Sbjct: 144 VQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTAL 203
Query: 1744 AEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALH 1803
AEAEIEY +I+V F P K Y+VIWT+TPWTIPAN+A+
Sbjct: 204 AEAEIEYHDIESDTIWVKF----PVKDGKGILDSG-----TYVVIWTTTPWTIPANRAIS 254
Query: 1804 VHPEFDYALVHIKNDPPLL-------LILAFNLVKSCLKKFGFKG-NIIGICKGIKLSKI 1855
P+ +Y L + L++A L +S KK G + + KG L KI
Sbjct: 255 YSPDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKI 314
Query: 1856 NFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIIN 1915
HPL +D Y P+ GD++T D+GTG VH+AP +G EDF ++ K ++I
Sbjct: 315 VCAHPLDGLD-GYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKY--GRTEIPV 371
Query: 1916 PVMDDGNFISTLPLFGGMSIW--------KASKLICSYLKKSKTLFNIEMFEHSYMHCWR 1967
V +DG + P FGG + A+K + L ++ L +HSY H WR
Sbjct: 372 TVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWR 431
Query: 1968 HKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDW 2027
K P+I+R T QWFI+MDK + +LR A+ AI+K +F P+ G++RL +MI +RPDW
Sbjct: 432 SKKPVIFRNTPQWFISMDKDLGDGT-TLRSRALDAIDKTRFVPAAGQNRLYNMIEDRPDW 490
Query: 2028 TISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKE-FLGD-- 2084
ISRQR WGVPI F+ + L + E+ IA E G + W KE FLG
Sbjct: 491 VISRQRAWGVPIPIFVAEDGEILMDE--EVNARIADAFEEEGADAWFAEGAKERFLGGFH 548
Query: 2085 DAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSI 2144
+ K D LDVWFDSG TH V+ + L +PADLYLEGSDQHRGWF+SSLL S
Sbjct: 549 PNGEFTKVTDILDVWFDSGSTHAFVL--EDRPDLKWPADLYLEGSDQHRGWFNSSLLESC 606
Query: 2145 ILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDL 2204
APYKA+LTHGF +D KG+KMSKS GN + PQ + GA+ILRLWVAS DYS D
Sbjct: 607 GTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVASVDYSDDQ 666
Query: 2205 SISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKE 2264
I EIL +V ETYR++RNTLR+LL N + F+P +++ +D+ E+++Y + + L
Sbjct: 667 RIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGL 726
Query: 2265 ILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQS 2324
+ Y Y+F I L + + DL +FY DI KD LY +S RR+AQT + I
Sbjct: 727 VREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVR 786
Query: 2325 LLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKI 2384
L + ++PIL FT+EEAW Y E ++ + + P + L K+ + +
Sbjct: 787 LTKWLAPILPFTAEEAWL-----YRYPEEEVSVHLEQFPETPAFWRDDALAEKWRKFRAV 841
Query: 2385 RSKVMQKLEKIRSTGIIGSSLQAEIILKINKLD-FEILNEFGEELKFFLLTSSVSL---- 2439
R V LE+ R+ IGSSL+A + I + L G + +TS +++
Sbjct: 842 RDVVTGALEEERAAKRIGSSLEAAPTVYIADPELLAAL--EGLDFAEICITSQLTVAAGE 899
Query: 2440 -----FQIKNLSEECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRC 2483
F++ + ++++ + +KC R W DVG YPD+ R
Sbjct: 900 APADAFRLDEVEGVAVVVEKAEGEKCARSWRITPDVGSDPYYPDVSPRD 948
Score = 916 bits (2369), Expect = 0.0
Identities = 376/921 (40%), Positives = 514/921 (55%), Gaps = 59/921 (6%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
RPKF+LHDGPPYANG+IHIGHA+NKILKD+IV+ M GFDA YVPG+DCHG+PIE +I
Sbjct: 52 GRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKI 111
Query: 508 EKLY---GKN---LSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEA 561
E+ Y GKN + E + + R A I+ Q+ +F RLG+LG+WDN Y TMDF EA
Sbjct: 112 EEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEA 171
Query: 562 NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIK 621
R FG KG +Y G KPV W ++ALAEAEIEY +I+V F P K
Sbjct: 172 RIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIWVKF----PVKDG 227
Query: 622 SIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLL-------LI 674
Y+VIWT+TPWTIPAN+A+ P+ +Y L + L+
Sbjct: 228 KGILDSG-----TYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLV 282
Query: 675 LAFNLVKSCLKKFGFKG-NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVD 733
+A L +S KK G + + KG L KI HPL +D Y P+ GD++T D
Sbjct: 283 VADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLD-GYEFEVPVLDGDHVTDD 341
Query: 734 SGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIW------- 786
+GTG VH+AP +G EDF ++ K ++I V +DG + P FGG +
Sbjct: 342 AGTGFVHTAPGHGREDFNVWMKY--GRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKY 399
Query: 787 -KASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSL 845
A+K + L ++ L +HSY H WR K P+I+R T QWFI+MDK + +L
Sbjct: 400 GDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGT-TL 458
Query: 846 RESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTL 905
R A+ AI+K +F P+ G++RL +MI +RPDW ISRQR WGVPI F+ + L +
Sbjct: 459 RSRALDAIDKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAEDGEILMDE-- 516
Query: 906 ELIELIAKKIELNGIEIWQNLDIKE-FLGD--DAVNYKKSNDTLDVWFDSGITHQTVIRG 962
E+ IA E G + W KE FLG + K D LDVWFDSG TH V+
Sbjct: 517 EVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVL-- 574
Query: 963 SHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKS 1022
+ L +PADLYLEGSDQHRGWF+SSLL S APYKA+LTHGF +D KG+KMSKS
Sbjct: 575 EDRPDLKWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKS 634
Query: 1023 KGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANT 1082
GN + PQ + GA+ILRLWVAS DYS D I EIL +V ETYR++RNTLR+LL N
Sbjct: 635 LGNTVSPQDVIKQSGADILRLWVASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNL 694
Query: 1083 SDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSF 1142
+ F+P +++ +D+ E+++Y + + L + Y Y+F I L + + DL +F
Sbjct: 695 AHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAF 754
Query: 1143 YLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIE 1202
Y DI KD LY +S RR+AQT + I L + ++PIL FT+EEAW Y E
Sbjct: 755 YFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWL-----YRYPE 809
Query: 1203 SGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILK 1262
++ + + P + L K+ + +R V LE+ R+ IGSSL+A +
Sbjct: 810 EEVSVHLEQFPETPAFWRDDALAEKWRKFRAVRDVVTGALEEERAAKRIGSSLEAAPTVY 869
Query: 1263 INKLD-FEILNEFGEELKFFLLTSSVSL---------FQIKNLSEECIIIKPSIYKKCNR 1312
I + L G + +TS +++ F++ + ++++ + +KC R
Sbjct: 870 IADPELLAAL--EGLDFAEICITSQLTVAAGEAPADAFRLDEVEGVAVVVEKAEGEKCAR 927
Query: 1313 CWHYQADVGERDDYPDLCNRC 1333
W DVG YPD+ R
Sbjct: 928 SWRITPDVGSDPYYPDVSPRD 948
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase and
is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and mitochondrial
forms [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 835 bits (2158), Expect = 0.0
Identities = 346/882 (39%), Positives = 504/882 (57%), Gaps = 64/882 (7%)
Query: 1570 GELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDII 1629
G LSKRE + WQE I+ +++K + +P+FI HDGPPYANG IH+GHA+NKILKDII
Sbjct: 6 GNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDII 65
Query: 1630 VKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKI 1682
+++ M GF+ PG+D HG+PIE ++EK G +L E + K R A ++I
Sbjct: 66 LRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQI 125
Query: 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSA 1742
E+Q+ F RLG+ G+W+N YKTMD E ++ F +KG +Y GLKPV W C++A
Sbjct: 126 EEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTA 185
Query: 1743 LAEAEIEY----KKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPA 1798
LAEAE+EY K D SIYV F + +K L ++IWT+TPWT+P+
Sbjct: 186 LAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKL-------SSLLIWTTTPWTLPS 238
Query: 1799 NQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFF 1858
N A+ VHP+F+YALV N ILA LV+ K G II KG L + +
Sbjct: 239 NLAIAVHPDFEYALVQD-NTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYE 297
Query: 1859 HPLSNIDINYNRLSPIYLG-DYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 1917
HPL + +P+ +G D++T + GTGIVH+AP +G ED+ I KK + ++++PV
Sbjct: 298 HPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGL---EVLSPV 354
Query: 1918 MDDGNFISTLPLFGG-------MSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKT 1970
+ G + + F G I KA+K+I LK L E HSY HCWR KT
Sbjct: 355 DEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKT 414
Query: 1971 PIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTIS 2030
P+IYR T QWFI K +++ + I K+ + P WG+ R + + NRPDW IS
Sbjct: 415 PVIYRATEQWFIKT--------KDIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCIS 466
Query: 2031 RQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD------ 2084
RQR+WG+PI + + +G+ P + IE + + IEL GI+ W ++FL
Sbjct: 467 RQRYWGIPIPIWYCEDTGE--PIVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSG 524
Query: 2085 DAVNYKKSNDTLDVWFDSGITHQTVIR---GSHKKQLIFPADLYLEGSDQHRGWFHSSLL 2141
D Y++ D LDVWFDSG I + K + +FPAD LEGSDQ RGWF+SSL
Sbjct: 525 DGGEYRRVPDVLDVWFDSGSMPYASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSSLA 584
Query: 2142 TSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYS 2201
L APYK ++THGF +D KG+KMSKS GN++ P K+ N +GA+ILRL+VAS+D
Sbjct: 585 IGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASSDPW 644
Query: 2202 KDLSISNEILNRVVETYRRIR-NTLRFLL--ANTSDFNPNINIIKISDMVEIDKYAIINI 2258
+DL S+EIL +VVE YR+IR NT RFLL AN F+P N + + E D++ + +
Sbjct: 645 EDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRL 704
Query: 2259 TNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSI 2318
+L +E+ Y FH ++ LQ + E+L ++Y+ I++DRLY K+ + +R+AQT++
Sbjct: 705 NSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKD-NDKRAAQTTL 763
Query: 2319 WHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKY 2378
++ +L+RL++P L T+EE + E E++ L ++ + + + L
Sbjct: 764 YYALLTLVRLLAPFLPHTAEEIYQNLP----GGEEEESVHLNLWPEVDEEFIDEALEANM 819
Query: 2379 MILKKI-------RSKVMQKLEKIRSTGIIGSSLQAEIILKI 2413
I+++I R +KL + +IG SL+A +
Sbjct: 820 AIVREIVEAFLALRDAANKKLRQPLKELVIGKSLEAVLKAVE 861
Score = 807 bits (2086), Expect = 0.0
Identities = 336/859 (39%), Positives = 489/859 (56%), Gaps = 64/859 (7%)
Query: 443 IKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMP 502
K + +P+FI HDGPPYANG IH+GHA+NKILKDII+++ M GF+ PG+D HG+P
Sbjct: 29 KKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLP 88
Query: 503 IEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTM 555
IE ++EK G +L E + K R A ++IE+Q+ F RLG+ G+W+N YKTM
Sbjct: 89 IEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTM 148
Query: 556 DFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEY----KKKYDFSIYVG 611
D E ++ F +KG +Y GLKPV W C++ALAEAE+EY K D SIYV
Sbjct: 149 DPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVK 208
Query: 612 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPL 671
F + +K L ++IWT+TPWT+P+N A+ VHP+F+YALV N
Sbjct: 209 FPVKKDKKTYLKVKL-------SSLLIWTTTPWTLPSNLAIAVHPDFEYALVQD-NTKVE 260
Query: 672 LLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLG-DYI 730
ILA LV+ K G II KG L + + HPL + +P+ +G D++
Sbjct: 261 YFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHV 320
Query: 731 TVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGG-------M 783
T + GTGIVH+AP +G ED+ I KK + ++++PV + G + + F G
Sbjct: 321 TTEDGTGIVHTAPGHGEEDYEIGKKYGL---EVLSPVDEKGVYTEGVNDFQGRFVKDADK 377
Query: 784 SIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKK 843
I KA+K+I LK L E HSY HCWR KTP+IYR T QWFI K
Sbjct: 378 DIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKT--------K 429
Query: 844 SLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPK 903
+++ + I K+ + P WG+ R + + NRPDW ISRQR+WG+PI + + +G+ P
Sbjct: 430 DIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGE--PI 487
Query: 904 TLELIELIAKKIELNGIEIWQNLDIKEFLGD------DAVNYKKSNDTLDVWFDSGITHQ 957
+ IE + + IEL GI+ W ++FL D Y++ D LDVWFDSG
Sbjct: 488 VVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPY 547
Query: 958 TVIR---GSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDS 1014
I + K + +FPAD LEGSDQ RGWF+SSL L APYK ++THGF +D
Sbjct: 548 ASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDE 607
Query: 1015 KGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIR-N 1073
KG+KMSKS GN++ P K+ N +GA+ILRL+VAS+D +DL S+EIL +VVE YR+IR N
Sbjct: 608 KGRKMSKSLGNVVDPLKVINKYGADILRLYVASSDPWEDLRFSDEILKQVVEKYRKIRWN 667
Query: 1074 TLRFLL--ANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKL 1131
T RFLL AN F+P N + + E D++ + + +L +E+ Y FH ++ L
Sbjct: 668 TYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRAL 727
Query: 1132 QIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAW 1191
Q + E+L ++Y+ I++DRLY K+ + +R+AQT++++ +L+RL++P L T+EE +
Sbjct: 728 QDFIVEELSNWYIRIIRDRLYCEAKD-NDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIY 786
Query: 1192 SIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKI-------RSKVMQKLEK 1244
E E++ L ++ + + + L I+++I R +KL +
Sbjct: 787 QNLP----GGEEEESVHLNLWPEVDEEFIDEALEANMAIVREIVEAFLALRDAANKKLRQ 842
Query: 1245 IRSTGIIGSSLQAEIILKI 1263
+IG SL+A +
Sbjct: 843 PLKELVIGKSLEAVLKAVE 861
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 764 bits (1974), Expect = 0.0
Identities = 367/987 (37%), Positives = 549/987 (55%), Gaps = 110/987 (11%)
Query: 1575 REPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYN 1634
REP K W+E ++Y ++ + N F LHDGPPYANGD+HIGHA+NKILKD I ++
Sbjct: 8 REPEIQKLWEENQVYKRVSDRN-NGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQL 66
Query: 1635 MDGFDAQYVPGYDCHGMPIEIQ----IEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFM 1690
+ G YVPG+DCHG+PIE++ +++ K L+PI+++ KA A + ++ Q+ F
Sbjct: 67 LQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFK 126
Query: 1691 RLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEY 1750
R G+ G+W+N Y T+D EA ++ FG +F GY+Y G KPV+W ++ALAEAE+EY
Sbjct: 127 RYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEY 186
Query: 1751 KKKY-DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFD 1809
+ + SIYV F P + S L+ G + IWT+TPWT+PAN A+ V+ +
Sbjct: 187 PEGHVSKSIYVAFPVVSPSE-TSPEELEEFLPGLS-LAIWTTTPWTMPANAAVAVNDKLQ 244
Query: 1810 YALVHI----------------------KNDPPLLLILAFNLVKSCLKKFGFKGNIIGIC 1847
Y++V + K L LI+A +LV + K+G K ++
Sbjct: 245 YSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTF 304
Query: 1848 KGIKLSKINFFHPLSNIDINYNRLSPIYL-GDYITVDSGTGIVHSAPAYGIEDFLIFKKQ 1906
G L + HPL YNR SP+ + GDYIT +SGTG+VH+AP +G ED++ K
Sbjct: 305 PGSDLEGCRYIHPL------YNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKY 358
Query: 1907 NMKDSDIINPVMDDGNFISTLPLFGGMSIWKA-SKLICSYLKKSKTLFNIEMFEHSYMHC 1965
+ +++PV D G F F G+S+ + + L ++ +L E + H Y +
Sbjct: 359 GLP---LLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYD 415
Query: 1966 WRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRP 2025
WR K P I+R T QWF +++ R++A+ AI+K+K+ P+ G++R+++M+ R
Sbjct: 416 WRTKKPTIFRATEQWFASVE--------GFRQAALDAIDKVKWIPAQGENRIRAMVSGRS 467
Query: 2026 DWTISRQRHWGVPIAFFIHKKSGK--LHPKTLELI-ELIAKKIELNGIEIWQNLDIKEFL 2082
DW ISRQR WGVPI F H ++ + ++ +T+ + ++A+K G + W +D+++ L
Sbjct: 468 DWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVKSIVAQK----GSDAWWYMDVEDLL 523
Query: 2083 ----GDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS 2138
D A +Y+K DT+DVWFDSG + V+ ++ L +PADLYLEGSDQHRGWF S
Sbjct: 524 PEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLGS--REGLSYPADLYLEGSDQHRGWFQS 581
Query: 2139 SLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKP---------QKLCNLFGAE 2189
SLLTS+ APYK++LTHGFV+D KG KMSKS GN++ P QK +GA+
Sbjct: 582 SLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGAD 641
Query: 2190 ILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVE 2249
+LRLWVAS DY+ D+ I +IL ++ + YR++R TLR+LL N D+ P+ N + D+
Sbjct: 642 VLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPD-NAVPYEDLPS 700
Query: 2250 IDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSH 2309
IDKYA+ + N+ EI Y Y+F I LQ + DL +FYLD+ KDRLY S
Sbjct: 701 IDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSF 760
Query: 2310 ARRSAQTSIWHINQSLLRLISPILSFTSEEAWS--IFSDKNFYIESGETIFTQLHYKLPK 2367
RRS QT + SLLR I+PIL +E+AW F + + E++F +
Sbjct: 761 TRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDG---SAAESVFEAGWPTPNE 817
Query: 2368 VYNS--KKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDF-EILNEF 2424
+ S + + + +L ++R +V + LE R+ +IG+SL+A++ L + L E
Sbjct: 818 EWLSFPAEDVDFWSLLLEVRDEVNKVLESARNGKLIGASLEAKVYLHASDASLAARLAEL 877
Query: 2425 ------GEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYK-------------------- 2458
+EL+ +TS V + SE+ Y
Sbjct: 878 CGASNGADELRRIFITSQVEVVS----SEDDETAACGSYTGEYVEGAGRVWVGVSRADGS 933
Query: 2459 KCNRCWHYQADVGERDDYPDLCNRCFN 2485
KC RCW+Y VG D+P LC RC+
Sbjct: 934 KCERCWNYSPAVGSFSDHPTLCERCYP 960
Score = 751 bits (1940), Expect = 0.0
Identities = 362/975 (37%), Positives = 540/975 (55%), Gaps = 109/975 (11%)
Query: 437 NGVWGEIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 496
N V+ + N F LHDGPPYANGD+HIGHA+NKILKD I ++ + G YVPG+
Sbjct: 19 NQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGW 78
Query: 497 DCHGMPIEIQ----IEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSY 552
DCHG+PIE++ +++ K L+PI+++ KA A + ++ Q+ F R G+ G+W+N Y
Sbjct: 79 DCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPY 138
Query: 553 KTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKY-DFSIYVG 611
T+D EA ++ FG +F GY+Y G KPV+W ++ALAEAE+EY + + SIYV
Sbjct: 139 LTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVA 198
Query: 612 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHI------ 665
F P + S L+ G + IWT+TPWT+PAN A+ V+ + Y++V +
Sbjct: 199 FPVVSPSE-TSPEELEEFLPGLS-LAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSED 256
Query: 666 ----------------KNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFH 709
K L LI+A +LV + K+G K ++ G L + H
Sbjct: 257 ESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIH 316
Query: 710 PLSNIDINYNRLSPIYL-GDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768
PL YNR SP+ + GDYIT +SGTG+VH+AP +G ED++ K + +++PV
Sbjct: 317 PL------YNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLP---LLSPVD 367
Query: 769 DDGNFISTLPLFGGMSIWKA-SKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTT 827
D G F F G+S+ + + L ++ +L E + H Y + WR K P I+R T
Sbjct: 368 DAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRAT 427
Query: 828 LQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGV 887
QWF +++ R++A+ AI+K+K+ P+ G++R+++M+ R DW ISRQR WGV
Sbjct: 428 EQWFASVE--------GFRQAALDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGV 479
Query: 888 PIAFFIHKKSGK--LHPKTLELI-ELIAKKIELNGIEIWQNLDIKEFL----GDDAVNYK 940
PI F H ++ + ++ +T+ + ++A+K G + W +D+++ L D A +Y+
Sbjct: 480 PIPVFYHVETKEPLMNEETIAHVKSIVAQK----GSDAWWYMDVEDLLPEKYRDKASDYE 535
Query: 941 KSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSA 1000
K DT+DVWFDSG + V+ ++ L +PADLYLEGSDQHRGWF SSLLTS+ A
Sbjct: 536 KGTDTMDVWFDSGSSWAGVLGS--REGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKA 593
Query: 1001 PYKALLTHGFVVDSKGKKMSKSKGNIIKP---------QKLCNLFGAEILRLWVASTDYS 1051
PYK++LTHGFV+D KG KMSKS GN++ P QK +GA++LRLWVAS DY+
Sbjct: 594 PYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVASVDYT 653
Query: 1052 KDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNL 1111
D+ I +IL ++ + YR++R TLR+LL N D+ P+ N + D+ IDKYA+ + N+
Sbjct: 654 GDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPD-NAVPYEDLPSIDKYALFQLENV 712
Query: 1112 QKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHI 1171
EI Y Y+F I LQ + DL +FYLD+ KDRLY S RRS QT +
Sbjct: 713 VNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAH 772
Query: 1172 NQSLLRLISPILSFTSEEAWS--IFSDKNFYIESGETIFTQLHYKLPKVYNS--KKLLYK 1227
SLLR I+PIL +E+AW F + + E++F + + S + +
Sbjct: 773 LLSLLRAIAPILPHLAEDAWQNLPFQEDG---SAAESVFEAGWPTPNEEWLSFPAEDVDF 829
Query: 1228 YMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDF-EILNEF------GEELKF 1280
+ +L ++R +V + LE R+ +IG+SL+A++ L + L E +EL+
Sbjct: 830 WSLLLEVRDEVNKVLESARNGKLIGASLEAKVYLHASDASLAARLAELCGASNGADELRR 889
Query: 1281 FLLTSSVSLFQIKNLSEECIIIKPSIYK--------------------KCNRCWHYQADV 1320
+TS V + SE+ Y KC RCW+Y V
Sbjct: 890 IFITSQVEVVS----SEDDETAACGSYTGEYVEGAGRVWVGVSRADGSKCERCWNYSPAV 945
Query: 1321 GERDDYPDLCNRCFN 1335
G D+P LC RC+
Sbjct: 946 GSFSDHPTLCERCYP 960
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 676 bits (1746), Expect = 0.0
Identities = 253/641 (39%), Positives = 356/641 (55%), Gaps = 46/641 (7%)
Query: 1578 GWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDG 1637
+ W E+ + + + +P F +HDGPP A G +HIGHA+NK LKDI++++ M G
Sbjct: 1 QIYQFWDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQG 60
Query: 1638 FDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFM 1690
FD +VPG+D HG+P E ++EK G L + + K R E ++ + F
Sbjct: 61 FDVLWVPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFK 120
Query: 1691 RLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEY 1750
RLG+ G+WD Y T+D EA R F + KG +Y G KPVNW +AL+EAE+EY
Sbjct: 121 RLGVSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEY 180
Query: 1751 KKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDY 1810
K SI+V F ++ + +VIWT+TPWT+P N A+ V+PEF+Y
Sbjct: 181 KDVKGPSIHVAFPLADGKGA--------------SLVIWTTTPWTLPGNTAVAVNPEFNY 226
Query: 1811 ALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNR 1870
+ + + ILA L+KS KK G I+ +G +L + HP NR
Sbjct: 227 VKIRVTGE---YYILAEALLKSLYKKKKEDGEILEDFRGKELIGKKYIHPF------VNR 277
Query: 1871 LSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLF 1930
PI DY+ ++ GTG VH APA+G +D+ + K+ N+ + INPV DDG + P F
Sbjct: 278 EIPIIADDYVDMEFGTGAVHIAPAHGEDDYEVGKRHNL---EFINPVDDDGTYNEEAPEF 334
Query: 1931 GGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKN 1990
G+ +KA K I L + L IE EHSY HCWR TPIIYR T QWF+ M
Sbjct: 335 QGLKRFKARKKIVELLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKN---- 390
Query: 1991 EKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKL 2050
L E+A+ A+ K++F P WG+ R + + N DW ISRQR WG PI + K +G++
Sbjct: 391 ----LAEAALKAVEKVQFVPKWGEKRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTGEV 446
Query: 2051 HPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVI 2110
+ + L EL+A + E GIE W + D K+ LG A ++ D LD WF SG + +
Sbjct: 447 YVRG-SLKELVAGREEEEGIEAWLHRDAKDLLGKGAGTLEQDEDVLDTWFSSGSWPFSTL 505
Query: 2111 RGSHKKQLIF----PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG 2166
F PAD+ LEGSDQ RGWF+ ++ L SAPYK +L HG V D +G
Sbjct: 506 GYPFTNTPEFKRFFPADMLLEGSDQTRGWFYRMIVLGTALTGSAPYKNVLVHGLVRDEQG 565
Query: 2167 KKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSIS 2207
+KMSKS GN+I P + + +GA+ LRLW+AS+DY +D++ S
Sbjct: 566 RKMSKSLGNVIDPLDVIDKYGADALRLWLASSDYGRDINFS 606
Score = 661 bits (1707), Expect = 0.0
Identities = 251/627 (40%), Positives = 351/627 (55%), Gaps = 46/627 (7%)
Query: 442 EIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGM 501
++ +P F +HDGPP A G +HIGHA+NK LKDI++++ M GFD +VPG+D HG+
Sbjct: 15 SLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLWVPGWDHHGL 74
Query: 502 PIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKT 554
P E ++EK G L + + K R E ++ + F RLG+ G+WD Y T
Sbjct: 75 PTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLGVSGDWDREYFT 134
Query: 555 MDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSF 614
+D EA R F + KG +Y G KPVNW +AL+EAE+EYK SI+V F
Sbjct: 135 LDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEYKDVKGPSIHVAFPL 194
Query: 615 SEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLI 674
++ + +VIWT+TPWT+P N A+ V+PEF+Y + + + I
Sbjct: 195 ADGKGA--------------SLVIWTTTPWTLPGNTAVAVNPEFNYVKIRVTGE---YYI 237
Query: 675 LAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDS 734
LA L+KS KK G I+ +G +L + HP NR PI DY+ ++
Sbjct: 238 LAEALLKSLYKKKKEDGEILEDFRGKELIGKKYIHPF------VNREIPIIADDYVDMEF 291
Query: 735 GTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICS 794
GTG VH APA+G +D+ + K+ N+ + INPV DDG + P F G+ +KA K I
Sbjct: 292 GTGAVHIAPAHGEDDYEVGKRHNL---EFINPVDDDGTYNEEAPEFQGLKRFKARKKIVE 348
Query: 795 YLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN 854
L + L IE EHSY HCWR TPIIYR T QWF+ M L E+A+ A+
Sbjct: 349 LLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKN--------LAEAALKAVE 400
Query: 855 KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKK 914
K++F P WG+ R + + N DW ISRQR WG PI + K +G+++ + L EL+A +
Sbjct: 401 KVQFVPKWGEKRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTGEVYVRG-SLKELVAGR 459
Query: 915 IELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIF---- 970
E GIE W + D K+ LG A ++ D LD WF SG + + F
Sbjct: 460 EEEEGIEAWLHRDAKDLLGKGAGTLEQDEDVLDTWFSSGSWPFSTLGYPFTNTPEFKRFF 519
Query: 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQ 1030
PAD+ LEGSDQ RGWF+ ++ L SAPYK +L HG V D +G+KMSKS GN+I P
Sbjct: 520 PADMLLEGSDQTRGWFYRMIVLGTALTGSAPYKNVLVHGLVRDEQGRKMSKSLGNVIDPL 579
Query: 1031 KLCNLFGAEILRLWVASTDYSKDLSIS 1057
+ + +GA+ LRLW+AS+DY +D++ S
Sbjct: 580 DVIDKYGADALRLWLASSDYGRDINFS 606
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 503 bits (1298), Expect = e-153
Identities = 244/803 (30%), Positives = 395/803 (49%), Gaps = 79/803 (9%)
Query: 1571 ELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIV 1630
+ E +K W+E I+ + + P+F+ +DGPP ANG H GH + + +KD++
Sbjct: 12 DFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVP 71
Query: 1631 KFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG-KNLSPIE---IQN---KARALAYEKIE 1683
++ M G+ + G+D HG+P+E+++EK G IE I+ K R +
Sbjct: 72 RYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTD 131
Query: 1684 QQKMDFMRLGILGEWDNSYKTMDFLNEANE--LRAFGIIFKKGYVYHGLKPVNWCFDCKS 1741
+ + RLG ++DN YKT+D NE E A ++ KG +Y G + V +C C++
Sbjct: 132 EWEEYTERLGRWVDFDNPYKTLD--NEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCET 189
Query: 1742 ALAEAEIE--YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPAN 1799
L+ E+ YK D S+YV F K+K Y++ WT+TPWT+P+N
Sbjct: 190 PLSNHEVAQGYKDVKDPSVYVKF------KLK--------GEENEYLLAWTTTPWTLPSN 235
Query: 1800 QALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFH 1859
AL VHP+ DY V + + ILA L++ LK+ ++ KG +L + +
Sbjct: 236 LALAVHPDIDYVKVEGGGE---VYILAEALLEKVLKE---DYEVVETFKGSELEGLEYEP 289
Query: 1860 PLS--NIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 1917
P + N R + L D++T + GTGIVH APA+G +DF + KK + ++ PV
Sbjct: 290 PFPYFADEKNAFR---VVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGL---PVVCPV 343
Query: 1918 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTT 1977
DDG F +P + G + A K I LK+ LF E +EHSY HCWR TP+IY T
Sbjct: 344 DDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYAT 403
Query: 1978 LQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKD-RLKSMILNRPDWTISRQRHWG 2036
WFI + KI ++ + KI ++P KD R + N DW ISR R+WG
Sbjct: 404 ESWFIRVTKI--------KDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWG 455
Query: 2037 VPIAFFIHKKSGKLH-PKTLELIELIAKKIELNGIEIWQNL------DIKEFLGDDAVNY 2089
P+ + + G++ ++E EL E +L ++ D
Sbjct: 456 TPLPIWRCEDCGRIDVIGSIE--ELEELFGEDVEPI---DLHRPYVDEVT-LPCPDGGTM 509
Query: 2090 KKSNDTLDVWFDSGI----THQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSII 2145
++ D +DVWFDSG + FPAD +EG DQ RGWF++ L S
Sbjct: 510 RRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTA 569
Query: 2146 LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWV-ASTDYSKDL 2204
L PYK +L HG V+D G+KMSKS GN + P ++ + +GA+ LR ++ +S+ +DL
Sbjct: 570 LFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDL 629
Query: 2205 SISNEILNRVVETYRRIRNTL----RFLL--ANTSDFNPNINIIKISDMVEIDKYAIINI 2258
S + V E R+ TL F + AN F+ ++ + E+D++ + +
Sbjct: 630 RFSEDG---VREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRL 686
Query: 2259 TNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSI 2318
+L KE+ Y+ ++ + +DL ++Y+ + R + ++ + +A ++
Sbjct: 687 NSLVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRRSRRRFWKE-EDDPDKLAAYATL 744
Query: 2319 WHINQSLLRLISPILSFTSEEAW 2341
+ + ++L RL +P F +EE +
Sbjct: 745 YTVLETLSRLAAPFTPFIAEEIY 767
Score = 488 bits (1259), Expect = e-148
Identities = 240/781 (30%), Positives = 386/781 (49%), Gaps = 79/781 (10%)
Query: 443 IKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMP 502
I+ P+F+ +DGPP ANG H GH + + +KD++ ++ M G+ + G+D HG+P
Sbjct: 34 IENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLP 93
Query: 503 IEIQIEKLYG-KNLSPIE---IQN---KARALAYEKIEQQKMDFMRLGILGEWDNSYKTM 555
+E+++EK G IE I+ K R ++ + RLG ++DN YKT+
Sbjct: 94 VELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTL 153
Query: 556 DFLNEANE--LRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE--YKKKYDFSIYVG 611
D NE E A ++ KG +Y G + V +C C++ L+ E+ YK D S+YV
Sbjct: 154 D--NEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVK 211
Query: 612 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPL 671
F K+K Y++ WT+TPWT+P+N AL VHP+ DY V +
Sbjct: 212 F------KLK--------GEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGE--- 254
Query: 672 LLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLS--NIDINYNRLSPIYLGDY 729
+ ILA L++ LK+ ++ KG +L + + P + N R + L D+
Sbjct: 255 VYILAEALLEKVLKE---DYEVVETFKGSELEGLEYEPPFPYFADEKNAFR---VVLADF 308
Query: 730 ITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKAS 789
+T + GTGIVH APA+G +DF + KK + ++ PV DDG F +P + G + A
Sbjct: 309 VTTEDGTGIVHIAPAFGEDDFEVGKKYGL---PVVCPVDDDGRFTEEVPDYAGKFVKDAD 365
Query: 790 KLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA 849
K I LK+ LF E +EHSY HCWR TP+IY T WFI + KI ++
Sbjct: 366 KEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKI--------KDRM 417
Query: 850 ITAINKIKFFPSWGKD-RLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLH-PKTLEL 907
+ KI ++P KD R + N DW ISR R+WG P+ + + G++ ++E
Sbjct: 418 LELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIE- 476
Query: 908 IELIAKKIELNGIEIWQNL------DIKEFLGDDAVNYKKSNDTLDVWFDSGI----THQ 957
EL E +L ++ D ++ D +DVWFDSG
Sbjct: 477 -ELEELFGEDVEPI---DLHRPYVDEVT-LPCPDGGTMRRVPDVIDVWFDSGSMPYAQLH 531
Query: 958 TVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK 1017
+ FPAD +EG DQ RGWF++ L S L PYK +L HG V+D G+
Sbjct: 532 YPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQ 591
Query: 1018 KMSKSKGNIIKPQKLCNLFGAEILRLWV-ASTDYSKDLSISNEILNRVVETYRRIRNTL- 1075
KMSKS GN + P ++ + +GA+ LR ++ +S+ +DL S + V E R+ TL
Sbjct: 592 KMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDG---VREVVRKFLLTLW 648
Query: 1076 ---RFLL--ANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSK 1130
F + AN F+ ++ + E+D++ + + +L KE+ Y+
Sbjct: 649 NVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARA 708
Query: 1131 LQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEA 1190
++ + +DL ++Y+ + R + ++ + +A +++ + ++L RL +P F +EE
Sbjct: 709 IRDFV-DDLSNWYIRRSRRRFWKE-EDDPDKLAAYATLYTVLETLSRLAAPFTPFIAEEI 766
Query: 1191 W 1191
+
Sbjct: 767 Y 767
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 333 bits (855), Expect = 3e-96
Identities = 207/794 (26%), Positives = 354/794 (44%), Gaps = 124/794 (15%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W KKW+E + + ++P F + PP G +H+GHA+N L+DI+ ++ M
Sbjct: 11 EEKWYKKWEESGYFKPD--PNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRM 68
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGK-NLSPIEIQNKA-RALAYE-------KIEQQK 1686
G++ + PG D G+ ++ +EK ++ ++ + +E I +Q
Sbjct: 69 RGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQ- 127
Query: 1687 MDFMRLGILGEWDNSYKTMD-FLNEA-NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA 1744
RLG+ +W TMD L+ A E AF +++KG +Y G + VNWC C++A++
Sbjct: 128 --LRRLGVSVDWSRERFTMDPGLSRAVQE--AFVRLYEKGLIYRGERLVNWCPKCRTAIS 183
Query: 1745 EAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHV 1804
+ E+EYK+ Y+ + L + G GY+V+ T+ P T+ + A+ V
Sbjct: 184 DIEVEYKEVEGKLYYIKYP------------LAD---GDGYLVVATTRPETLLGDTAVAV 228
Query: 1805 HPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNI 1864
HP+ D +K +++G K + L PL
Sbjct: 229 HPD----------DER------------------YK-HLVG--KEVIL-------PLVGR 250
Query: 1865 DINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFI 1924
+I PI +Y+ + GTG V PA+ D+ + K+ N+ +IN + +DG
Sbjct: 251 EI------PIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNL---PLINIIDEDGRIN 301
Query: 1925 STLPL-FGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFIN 1983
F G+ ++A K I L++ L IE +HS HC R TPI + QWF+
Sbjct: 302 EEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVK 361
Query: 1984 MDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFI 2043
+ ++ K +++++ KIKF P + R + + N DW ISRQ WG I +
Sbjct: 362 VLELAKKALEAVKD------GKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWY 415
Query: 2044 HKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSG 2103
K+ G + E + A + ++ D LD WF S
Sbjct: 416 CKECGNVVVAEEEPEDPAAAEK------------------CPKEELEQDEDVLDTWFSSS 457
Query: 2104 ITHQTVIRGSHKKQLIF----PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHG 2159
+ + + G ++ P DL + G D W ++ + L P+K + HG
Sbjct: 458 LWPFSTL-GWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHG 516
Query: 2160 FVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETY 2218
V D +G+KMSKSKGN+I P + + +GA+ LR +AS +D++ + VE Y
Sbjct: 517 LVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEK----RVEGY 572
Query: 2219 RR----IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEF 2274
R + N RF+L N D P + + + + D++ + + KE+ Y F
Sbjct: 573 RNFLNKLWNATRFVLMNLDDLGP--DDLDLLALSLADRWILSRLNETVKEVTEALDNYRF 630
Query: 2275 HMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILS 2334
L + D +YL++ K RLY ++ +R+A+ +++++ +LLRL+ P +
Sbjct: 631 DEAARALYEFIWNDFCDWYLELAKPRLYGGEE---EKRAARATLYYVLDTLLRLLHPFMP 687
Query: 2335 FTSEEAWSIFSDKN 2348
F +EE W
Sbjct: 688 FITEEIWQKLPGTE 701
Score = 318 bits (817), Expect = 3e-91
Identities = 201/778 (25%), Positives = 347/778 (44%), Gaps = 122/778 (15%)
Query: 442 EIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGM 501
+ + ++P F + PP G +H+GHA+N L+DI+ ++ M G++ + PG D G+
Sbjct: 25 KPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGI 84
Query: 502 PIEIQIEKLYGK-NLSPIEIQNKA-RALAYE-------KIEQQKMDFMRLGILGEWDNSY 552
++ +EK ++ ++ + +E I +Q RLG+ +W
Sbjct: 85 ATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQ---LRRLGVSVDWSRER 141
Query: 553 KTMD-FLNEA-NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYV 610
TMD L+ A E AF +++KG +Y G + VNWC C++A+++ E+EYK+ Y+
Sbjct: 142 FTMDPGLSRAVQE--AFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYI 199
Query: 611 GFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPP 670
+ L + G GY+V+ T+ P T+ + A+ VHP+ D
Sbjct: 200 KYP------------LAD---GDGYLVVATTRPETLLGDTAVAVHPD----------DER 234
Query: 671 LLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYI 730
+K +++G K + L PL +I PI +Y+
Sbjct: 235 ------------------YK-HLVG--KEVIL-------PLVGREI------PIIADEYV 260
Query: 731 TVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPL-FGGMSIWKAS 789
+ GTG V PA+ D+ + K+ N+ +IN + +DG F G+ ++A
Sbjct: 261 DPEFGTGAVKITPAHDFNDYEVGKRHNL---PLINIIDEDGRINEEAAGEFAGLDRFEAR 317
Query: 790 KLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA 849
K I L++ L IE +HS HC R TPI + QWF+ + ++ K +++++
Sbjct: 318 KKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKD-- 375
Query: 850 ITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIE 909
KIKF P + R + + N DW ISRQ WG I + K+ G + E +
Sbjct: 376 ----GKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEPED 431
Query: 910 LIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI 969
A + ++ D LD WF S + + + G ++
Sbjct: 432 PAAAEK------------------CPKEELEQDEDVLDTWFSSSLWPFSTL-GWPEETPD 472
Query: 970 F----PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGN 1025
P DL + G D W ++ + L P+K + HG V D +G+KMSKSKGN
Sbjct: 473 LKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGN 532
Query: 1026 IIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRR----IRNTLRFLLA 1080
+I P + + +GA+ LR +AS +D++ + VE YR + N RF+L
Sbjct: 533 VIDPLDVIDKYGADALRFTLASLASPGRDINFDEK----RVEGYRNFLNKLWNATRFVLM 588
Query: 1081 NTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLG 1140
N D P + + + + D++ + + KE+ Y F L + D
Sbjct: 589 NLDDLGP--DDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFC 646
Query: 1141 SFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKN 1198
+YL++ K RLY ++ +R+A+ +++++ +LLRL+ P + F +EE W
Sbjct: 647 DWYLELAKPRLYGGEE---EKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGTE 701
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 304 bits (781), Expect = 9e-87
Identities = 206/792 (26%), Positives = 341/792 (43%), Gaps = 121/792 (15%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W KKW++ + + N+P F + PP G +HIGHA+N ++DII ++ M
Sbjct: 11 EKKWYKKWEKSGFFKPDGNS--NKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRM 68
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGK------NLSPIEIQNKARALAYEKIEQQKMDF 1689
G++ ++PG D G+ ++++EK G +L E + K E K
Sbjct: 69 KGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQI 128
Query: 1690 MRLGILGEWDNSYKTMD-FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI 1748
RLG +W TMD L++A + AF +++KG +Y G VNW +A+++ E+
Sbjct: 129 KRLGASLDWSRERFTMDEGLSKAVKE-AFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEV 187
Query: 1749 EYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEF 1808
EYK+ +Y I+ + L N K Y+V+ T+ P T+ + A+ VHPE
Sbjct: 188 EYKEV-KGKLY---------YIR--YPLAN--GSKDYLVVATTRPETMFGDTAVAVHPED 233
Query: 1809 D-YALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDIN 1867
+ Y K + K PL
Sbjct: 234 ERY--------------------KHLIGKK-------------------VILPL------ 248
Query: 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTL 1927
R PI +Y+ ++ GTG V PA+ D+ K+ N+ + IN + +DG
Sbjct: 249 TGRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNL---EFINILDEDGLLNENA 305
Query: 1928 PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPI-IYRTTLQWFINMDK 1986
+ G++ ++A K I LK+ L IE H+ CWR T + + QWF+ ++K
Sbjct: 306 GKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSK-QWFVKVEK 364
Query: 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKK 2046
+ ++ E +IKF P + R + + N DW ISRQ WG I + K+
Sbjct: 365 LADKALEAAEE------GEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKE 418
Query: 2047 SGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 2106
G+++ E L + +V ++ D LD WF S +
Sbjct: 419 CGEVYVAKEEP------------------LPDDKTNTGPSVELEQDTDVLDTWFSSSLWP 460
Query: 2107 QTVIR-GSHKKQL--IFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVD 2163
+ + K L +P DL + G D W + S+ L P+K + HG V D
Sbjct: 461 FSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRD 520
Query: 2164 SKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIR 2222
+G+KMSKS GN+I P + +GA+ LR +AS D++ + VE+ R
Sbjct: 521 EQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWK----RVESARNFL 576
Query: 2223 NTL----RFLLANTSDFNPNINIIKISDMVE---IDKYAIINITNLQKEILSHYRMYEFH 2275
N L RF+L N SD ++ + D++ + + KE+ Y F
Sbjct: 577 NKLWNASRFVLMNLSD-----DLELSGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFA 631
Query: 2276 MIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSF 2335
L + D +Y++++K RLY N +++A+ +++++ LRL+ P + F
Sbjct: 632 EAAKALYEFIWNDFCDWYIELVKYRLYN--GNEAEKKAARDTLYYVLDKALRLLHPFMPF 689
Query: 2336 TSEEAWSIFSDK 2347
+EE W F +
Sbjct: 690 ITEEIWQHFKEG 701
Score = 295 bits (758), Expect = 1e-83
Identities = 201/776 (25%), Positives = 334/776 (43%), Gaps = 119/776 (15%)
Query: 442 EIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGM 501
+ + N+P F + PP G +HIGHA+N ++DII ++ M G++ ++PG D G+
Sbjct: 25 KPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGI 84
Query: 502 PIEIQIEKLYGK------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTM 555
++++EK G +L E + K E K RLG +W TM
Sbjct: 85 ATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTM 144
Query: 556 D-FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSF 614
D L++A + AF +++KG +Y G VNW +A+++ E+EYK+ +Y
Sbjct: 145 DEGLSKAVKE-AFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEV-KGKLY----- 197
Query: 615 SEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFD-YALVHIKNDPPLLL 673
I+ + L N K Y+V+ T+ P T+ + A+ VHPE + Y
Sbjct: 198 ----YIR--YPLAN--GSKDYLVVATTRPETMFGDTAVAVHPEDERY------------- 236
Query: 674 ILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVD 733
K + K PL R PI +Y+ ++
Sbjct: 237 -------KHLIGKK-------------------VILPL------TGRKIPIIADEYVDME 264
Query: 734 SGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLIC 793
GTG V PA+ D+ K+ N+ + IN + +DG + G++ ++A K I
Sbjct: 265 FGTGAVKVTPAHDFNDYEWGKRHNL---EFINILDEDGLLNENAGKYQGLTRFEARKKIV 321
Query: 794 SYLKKSKTLFNIEMFEHSYMHCWRHKTPI-IYRTTLQWFINMDKIPKNEKKSLRESAITA 852
LK+ L IE H+ CWR T + + QWF+ ++K+ ++ E
Sbjct: 322 EDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSK-QWFVKVEKLADKALEAAEE----- 375
Query: 853 INKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIA 912
+IKF P + R + + N DW ISRQ WG I + K+ G+++ E
Sbjct: 376 -GEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEP----- 429
Query: 913 KKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIR-GSHKKQL--I 969
L + +V ++ D LD WF S + + + K L
Sbjct: 430 -------------LPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKF 476
Query: 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKP 1029
+P DL + G D W + S+ L P+K + HG V D +G+KMSKS GN+I P
Sbjct: 477 YPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDP 536
Query: 1030 QKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTL----RFLLANTSD 1084
+ +GA+ LR +AS D++ + VE+ R N L RF+L N SD
Sbjct: 537 LDVIEKYGADALRFTLASLVTPGDDINFDWK----RVESARNFLNKLWNASRFVLMNLSD 592
Query: 1085 FNPNINIIKISDMVE---IDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGS 1141
++ + D++ + + KE+ Y F L + D
Sbjct: 593 -----DLELSGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCD 647
Query: 1142 FYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 1197
+Y++++K RLY N +++A+ +++++ LRL+ P + F +EE W F +
Sbjct: 648 WYIELVKYRLYN--GNEAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG 701
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 289 bits (743), Expect = 2e-82
Identities = 198/808 (24%), Positives = 335/808 (41%), Gaps = 152/808 (18%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W K W+E+ Y +P + + PP +G +HIGH + D I ++ M
Sbjct: 16 EEKWQKIWEEEGTYKFDP--DERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRM 73
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI---EIQNKARALAYEKIEQQKMDFMRL 1692
G++ + G+D +G+P E ++EK YG I E R L E ++ + + RL
Sbjct: 74 RGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKKFRELWRRL 133
Query: 1693 GILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKK 1752
G+ +W Y+T+ ++F ++KKG +Y PV WC C++A+A+AE+EY++
Sbjct: 134 GLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYRE 193
Query: 1753 KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYAL 1812
+ Y+ F + G I I T+ P +PA
Sbjct: 194 REGKLNYIKFP---------------VEDG-EEIEIATTRPELLPA-------------- 223
Query: 1813 VHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRL- 1871
C + HP D Y L
Sbjct: 224 ----------------------------------CVAV------VVHPD---DERYKHLV 240
Query: 1872 -----SPIYLGDYITV--------DSGTGIVHSAPAYG-IEDFLIFKKQNMKDSDIINPV 1917
P++ G + + D GTG V +G D +++ N+ II+
Sbjct: 241 GKTAIVPLF-GVEVPILADPLVDPDFGTGAVMIC-TFGDKTDVTWWRELNLPTRIIID-- 296
Query: 1918 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTT 1977
+DG G++I +A K I LK L E +H+ C R TP+ T
Sbjct: 297 -EDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVT 355
Query: 1978 LQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMI--LNRPDWTISRQRHW 2035
QWFI + L+E + +I ++P + RL++ I LN DW ISRQR++
Sbjct: 356 RQWFIKV--------LDLKEELLERGKEINWYPEHMRVRLENWIEGLNW-DWCISRQRYF 406
Query: 2036 GVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNL---------DIKEFLGDDA 2086
G PI + K G ++ + +L ++ ++ F G+
Sbjct: 407 GTPIPVWYCKDCGHP---------ILPDEEDLP-VDPTKDEPPGYKCPQCGSPGFEGET- 455
Query: 2087 VNYKKSNDTLDVWFDSGITHQTV---IRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTS 2143
D +D W S IT V R + +FP DL +G D R W ++L +
Sbjct: 456 -------DVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRA 508
Query: 2144 IILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKD 2203
+L P+K ++ G V+D GKKMSKSKGN++ P++L +GA+ +R W AS D
Sbjct: 509 YLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSD 568
Query: 2204 LSISNEILNRVVETYRR----IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINIT 2259
+ V+ RR + N RF+L F+ + K + +D++ + +
Sbjct: 569 TPFDEK----QVKIGRRLLTKLWNASRFVLH----FSADPEPDKAEVLEPLDRWILAKLA 620
Query: 2260 NLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIW 2319
+ ++ Y+F + +++ + YL+++K R Y + ++SA+ +++
Sbjct: 621 KVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAY-GEDEEEEQKSARYTLY 679
Query: 2320 HINQSLLRLISPILSFTSEEAWSIFSDK 2347
+ +LLRL++P L F +EE WS
Sbjct: 680 TVLDTLLRLLAPFLPFITEEVWSWLYGG 707
Score = 273 bits (702), Expect = 6e-77
Identities = 192/788 (24%), Positives = 327/788 (41%), Gaps = 150/788 (19%)
Query: 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEI 505
+P + + PP +G +HIGH + D I ++ M G++ + G+D +G+P E
Sbjct: 34 DERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTER 93
Query: 506 QIEKLYGKNLSPI---EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEAN 562
++EK YG I E R L E ++ + + RLG+ +W Y+T+
Sbjct: 94 KVEKYYGIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRI 153
Query: 563 ELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKS 622
++F ++KKG +Y PV WC C++A+A+AE+EY+++ Y+ F
Sbjct: 154 SQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYREREGKLNYIKFP--------- 204
Query: 623 IFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKS 682
+ G I I T+ P +PA
Sbjct: 205 ------VEDG-EEIEIATTRPELLPA---------------------------------- 223
Query: 683 CLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRL------SPIYLGDYITV---- 732
C + HP D Y L P++ G + +
Sbjct: 224 --------------CVAV------VVHPD---DERYKHLVGKTAIVPLF-GVEVPILADP 259
Query: 733 ----DSGTGIVHSAPAYG-IEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWK 787
D GTG V +G D +++ N+ II+ +DG G++I +
Sbjct: 260 LVDPDFGTGAVMIC-TFGDKTDVTWWRELNLPTRIIID---EDGRMTEAAGKLAGLTIEE 315
Query: 788 ASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 847
A K I LK L E +H+ C R TP+ T QWFI + L+E
Sbjct: 316 ARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKV--------LDLKE 367
Query: 848 SAITAINKIKFFPSWGKDRLKSMI--LNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTL 905
+ +I ++P + RL++ I LN DW ISRQR++G PI + K G
Sbjct: 368 ELLERGKEINWYPEHMRVRLENWIEGLNW-DWCISRQRYFGTPIPVWYCKDCGHP----- 421
Query: 906 ELIELIAKKIELNGIEIWQNL---------DIKEFLGDDAVNYKKSNDTLDVWFDSGITH 956
++ + +L ++ ++ F G+ D +D W S IT
Sbjct: 422 ----ILPDEEDLP-VDPTKDEPPGYKCPQCGSPGFEGET--------DVMDTWATSSITP 468
Query: 957 QTV---IRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVD 1013
V R + +FP DL +G D R W ++L + +L P+K ++ G V+D
Sbjct: 469 LIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLD 528
Query: 1014 SKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRR--- 1070
GKKMSKSKGN++ P++L +GA+ +R W AS D + V+ RR
Sbjct: 529 PDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEK----QVKIGRRLLT 584
Query: 1071 -IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVS 1129
+ N RF+L F+ + K + +D++ + + + ++ Y+F +
Sbjct: 585 KLWNASRFVLH----FSADPEPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALE 640
Query: 1130 KLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEE 1189
+++ + YL+++K R Y + ++SA+ +++ + +LLRL++P L F +EE
Sbjct: 641 EIESFFWHVFCDDYLELVKSRAY-GEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEE 699
Query: 1190 AWSIFSDK 1197
WS
Sbjct: 700 VWSWLYGG 707
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 288 bits (739), Expect = 2e-79
Identities = 199/685 (29%), Positives = 311/685 (45%), Gaps = 120/685 (17%)
Query: 1574 KREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFY 1633
K+E + W E + K + P++I +DGPP+A G H GH + +KDI+ ++
Sbjct: 12 KQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQ 71
Query: 1634 NMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLG 1693
+M G G+DCHG+P+E +I+K G I+ + D +++G
Sbjct: 72 SMTGHHVTRRFGWDCHGLPVEYEIDKKLG-------IKRRD-------------DVLKMG 111
Query: 1694 I------------------------LGEW---DNSYKTMDFLNEANELRAFGIIFKKGYV 1726
I G W +N YKTMD + F +F+KG V
Sbjct: 112 IDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLV 171
Query: 1727 YHGLKPVNWCFDCKSALA--EAEIEYKKKYDFSIYVGFSF-SEPEKIKSIFNLKNLPSGK 1783
Y G K + + CK+ L+ EA + YK D ++ V F +P+
Sbjct: 172 YKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNAS------------ 219
Query: 1784 GYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC--LKKFGFKG 1841
V WT+TPWT+P+N AL V+P F Y V K + I+A + + + K KG
Sbjct: 220 --FVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVY-IVAESRLSALPTAKPKSKKG 276
Query: 1842 N----------IIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL----GDYITVDSGTG 1887
+ ++ G L + PL + ++ S DY+T DSGTG
Sbjct: 277 SKPENAAEGYEVLAKVPGSSLVGKKY-EPLFDY---FSEFSDTAFRVVADDYVTDDSGTG 332
Query: 1888 IVHSAPAYGIEDFLIFKKQNM--KDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSY 1945
+VH APA+G +D+ + + K ++ PV DDG F + F G + A K I +
Sbjct: 333 VVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAA 392
Query: 1946 LKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINK 2005
+K L HSY CWR TP+IYR WF+ +++I K L E+ NK
Sbjct: 393 IKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEI----KDRLLEN-----NK 443
Query: 2006 IKFF-PSWGKD-RLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAK 2063
++ P + K+ R + + N DW +SR R WG P+ +I + + +I IA+
Sbjct: 444 QTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDG-----EEVVVIGSIAE 498
Query: 2064 KIELNGIEIW-------QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-- 2114
+L+G+++ ++ I G + ++ +D D WF+SG I H
Sbjct: 499 LEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYI---HYP 555
Query: 2115 --KKQLI---FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKM 2169
K+L FPAD EG DQ RGWF++ ++ S L +K L+ +G V+ GKKM
Sbjct: 556 FENKELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKM 615
Query: 2170 SKSKGNIIKPQKLCNLFGAEILRLW 2194
SKS N P ++ + +GA+ LRL+
Sbjct: 616 SKSLKNYPDPNEVIDKYGADALRLY 640
Score = 285 bits (732), Expect = 1e-78
Identities = 206/718 (28%), Positives = 322/718 (44%), Gaps = 142/718 (19%)
Query: 391 ELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGVWGEIKASINRP 450
E+ G + F ++EE ILSL I +T ++K + P
Sbjct: 1 EVCEGKDFSFPKQEEK--------ILSLWSEIDAFKT--------------QLKRTEGLP 38
Query: 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 510
++I +DGPP+A G H GH + +KDI+ ++ +M G G+DCHG+P+E +I+K
Sbjct: 39 EYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKK 98
Query: 511 YGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGI------------------------LG 546
G I+ + D +++GI G
Sbjct: 99 LG-------IKRRD-------------DVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTG 138
Query: 547 EW---DNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA--EAEIEYK 601
W +N YKTMD + F +F+KG VY G K + + CK+ L+ EA + YK
Sbjct: 139 RWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYK 198
Query: 602 KKYDFSIYVGFSF-SEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDY 660
D ++ V F +P+ V WT+TPWT+P+N AL V+P F Y
Sbjct: 199 DVSDPAVMVSFPIVGDPDNAS--------------FVAWTTTPWTLPSNLALCVNPNFTY 244
Query: 661 ALVHIKNDPPLLLILAFNLVKSC--LKKFGFKGN----------IIGICKGIKLSKINFF 708
V K + I+A + + + K KG+ ++ G L +
Sbjct: 245 VKVRNKYTGKVY-IVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKY- 302
Query: 709 HPLSNIDINYNRLSPIYL----GDYITVDSGTGIVHSAPAYGIEDFLIFKKQNM--KDSD 762
PL + ++ S DY+T DSGTG+VH APA+G +D+ + + K +
Sbjct: 303 EPLFDY---FSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGN 359
Query: 763 IINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPI 822
+ PV DDG F + F G + A K I + +K L HSY CWR TP+
Sbjct: 360 LPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPL 419
Query: 823 IYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFF-PSWGKD-RLKSMILNRPDWTIS 880
IYR WF+ +++I K L E+ NK ++ P + K+ R + + N DW +S
Sbjct: 420 IYRAVPSWFVKVEEI----KDRLLEN-----NKQTYWVPDYVKEKRFHNWLENARDWAVS 470
Query: 881 RQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW-------QNLDIKEFLG 933
R R WG P+ +I + + +I IA+ +L+G+++ ++ I G
Sbjct: 471 RSRFWGTPLPIWISDDG-----EEVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRG 525
Query: 934 DDAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLI---FPADLYLEGSDQHRGWF 986
+ ++ +D D WF+SG I H K+L FPAD EG DQ RGWF
Sbjct: 526 PEFGVLRRVDDVFDCWFESGSMPYAYI---HYPFENKELFEKNFPADFVAEGLDQTRGWF 582
Query: 987 HSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLW 1044
++ ++ S L +K L+ +G V+ GKKMSKS N P ++ + +GA+ LRL+
Sbjct: 583 YTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLY 640
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 281 bits (721), Expect = 4e-77
Identities = 228/813 (28%), Positives = 376/813 (46%), Gaps = 101/813 (12%)
Query: 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDI 1628
N + + E +K W+ ++ K + N+ +I +DGPP+A G H GH + I+KD
Sbjct: 71 NPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDC 130
Query: 1629 IVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSP------IEIQN-KARALAYEK 1681
+ +++ GF + G+DCHG+PIE +IEK N I++ N K R + +
Sbjct: 131 VTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKY 190
Query: 1682 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKS 1741
+ R+G ++ N YKTMD + F ++K YVY K + + C +
Sbjct: 191 SNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNT 250
Query: 1742 ALA--EAEIEYKKKYDFSIYVGFSFSEP------------------EKIKSIFNLKN--- 1778
++ E + YK D SI + F EK ++N K
Sbjct: 251 PISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENS 310
Query: 1779 -----------LPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALV-HIKNDPPLLLILA 1826
+ I+ WT+TPWT+P+N AL V+ F Y + H+K++ ++I+
Sbjct: 311 NNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNR--VVIVG 368
Query: 1827 FNLVKSCLKKFGFKG---NIIGICKGIKLSKINFFHPLSNIDINYN---RLSPIYLGDYI 1880
++ +K+ + I+ KG +L + + +N YN R I D++
Sbjct: 369 ECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDFV 428
Query: 1881 TVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSD---IINPVMDDGNFISTLPLFGGMSIWK 1937
T D+GTGIVH AP YG +DF + KK + D + I+P+ +G F + + + I +
Sbjct: 429 TDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKE 488
Query: 1938 ASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 1997
A +I LK L + HSY CWR TP+IYR WFI + N L +
Sbjct: 489 ADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRV----SNSTNELVK 544
Query: 1998 SA-----ITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHP 2052
+ I A K K F +W KD DW ISR R+WG PI + +K
Sbjct: 545 NNETTYWIPAHIKEKKFHNWIKDA--------KDWCISRNRYWGTPIPIWADEKM----- 591
Query: 2053 KTLELIELIAKKIELNGIE--------IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGI 2104
+T+ +E I EL+G++ +++IK G K+ + D WF+SG
Sbjct: 592 ETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGS 651
Query: 2105 -----THQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHG 2159
H IFPAD EG DQ RGWF++ L+ S +L AP+K L+ +G
Sbjct: 652 MPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNG 711
Query: 2160 FVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST--DYSKDLSISNEILNRVVET 2217
V+ S GKKMSK N P + + +GA+ LRL++ ++ +++L + +N VV++
Sbjct: 712 LVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKS 771
Query: 2218 -----YRRIR----NTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSH 2268
Y R R+ N F N + I +D + +D++ ++ +L K + +
Sbjct: 772 FILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNI-MDQWIFSSVQSLTKSVHTE 830
Query: 2269 YRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRL 2301
+ Y+ + ++ KL + E+L ++Y+ + +DR+
Sbjct: 831 MKAYKLYNVLPKLLQFI-ENLTNWYIRLNRDRM 862
Score = 278 bits (713), Expect = 4e-76
Identities = 224/788 (28%), Positives = 366/788 (46%), Gaps = 101/788 (12%)
Query: 444 KASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPI 503
K + N+ +I +DGPP+A G H GH + I+KD + +++ GF + G+DCHG+PI
Sbjct: 96 KLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPI 155
Query: 504 EIQIEKLYGKNLSP------IEIQN-KARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD 556
E +IEK N I++ N K R + + + R+G ++ N YKTMD
Sbjct: 156 EYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMD 215
Query: 557 FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA--EAEIEYKKKYDFSIYVGFSF 614
+ F ++K YVY K + + C + ++ E + YK D SI + F
Sbjct: 216 KTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVL 275
Query: 615 SEP------------------EKIKSIFNLKN--------------LPSGKGYIVIWTST 642
EK ++N K + I+ WT+T
Sbjct: 276 CSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTT 335
Query: 643 PWTIPANQALHVHPEFDYALV-HIKNDPPLLLILAFNLVKSCLKKFGFKG---NIIGICK 698
PWT+P+N AL V+ F Y + H+K++ ++I+ ++ +K+ + I+ K
Sbjct: 336 PWTLPSNLALCVNEHFTYLRIHHVKSNR--VVIVGECRLEWIMKELKWNVEDLKIVNRFK 393
Query: 699 GIKLSKINFFHPLSNIDINYN---RLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKK 755
G +L + + +N YN R I D++T D+GTGIVH AP YG +DF + KK
Sbjct: 394 GKELKGLRYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKK 453
Query: 756 QNMKDSD---IINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSY 812
+ D + I+P+ +G F + + + I +A +I LK L + HSY
Sbjct: 454 NGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSY 513
Query: 813 MHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA-----ITAINKIKFFPSWGKDRL 867
CWR TP+IYR WFI + N L ++ I A K K F +W KD
Sbjct: 514 PFCWRSDTPLIYRAIPAWFIRV----SNSTNELVKNNETTYWIPAHIKEKKFHNWIKDA- 568
Query: 868 KSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE------ 921
DW ISR R+WG PI + +K +T+ +E I EL+G++
Sbjct: 569 -------KDWCISRNRYWGTPIPIWADEKM-----ETVICVESIKHLEELSGVKNINDLH 616
Query: 922 --IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGI-----THQTVIRGSHKKQLIFPADL 974
+++IK G K+ + D WF+SG H IFPAD
Sbjct: 617 RHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADF 676
Query: 975 YLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN 1034
EG DQ RGWF++ L+ S +L AP+K L+ +G V+ S GKKMSK N P + +
Sbjct: 677 IAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILD 736
Query: 1035 LFGAEILRLWVAST--DYSKDLSISNEILNRVVET-----YRRIR----NTLRFLLANTS 1083
+GA+ LRL++ ++ +++L + +N VV++ Y R R+ N
Sbjct: 737 KYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKK 796
Query: 1084 DFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY 1143
F N + I +D + +D++ ++ +L K + + + Y+ + ++ KL + E+L ++Y
Sbjct: 797 QFLFNTDYIYKNDNI-MDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFI-ENLTNWY 854
Query: 1144 LDILKDRL 1151
+ + +DR+
Sbjct: 855 IRLNRDRM 862
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic class
I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically similar
amino acids.
Length = 338
Score = 251 bits (643), Expect = 3e-74
Identities = 92/240 (38%), Positives = 129/240 (53%), Gaps = 49/240 (20%)
Query: 821 PIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTIS 880
P+IYR T QWFI + KI ++ + A +K+ + P W K+R + + NR DW IS
Sbjct: 144 PLIYRATPQWFIRVTKI--------KDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCIS 195
Query: 881 RQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYK 940
RQR+WG PI + + G E++ +++
Sbjct: 196 RQRYWGTPIPVWYCEDCG----------EVLVRRVP------------------------ 221
Query: 941 KSNDTLDVWFDSGITHQTVI---RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILN 997
D LDVWFDSG + + + +FPAD LEGSDQ RGWF+S LL S L
Sbjct: 222 ---DVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALF 278
Query: 998 KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD-YSKDLSI 1056
APYK ++ HGFV+D G+KMSKS GN + PQ++ + +GA+ LRLWVAS+D Y++DL
Sbjct: 279 GKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338
Score = 251 bits (643), Expect = 3e-74
Identities = 92/240 (38%), Positives = 129/240 (53%), Gaps = 49/240 (20%)
Query: 1971 PIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTIS 2030
P+IYR T QWFI + KI ++ + A +K+ + P W K+R + + NR DW IS
Sbjct: 144 PLIYRATPQWFIRVTKI--------KDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCIS 195
Query: 2031 RQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYK 2090
RQR+WG PI + + G E++ +++
Sbjct: 196 RQRYWGTPIPVWYCEDCG----------EVLVRRVP------------------------ 221
Query: 2091 KSNDTLDVWFDSGITHQTVI---RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILN 2147
D LDVWFDSG + + + +FPAD LEGSDQ RGWF+S LL S L
Sbjct: 222 ---DVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALF 278
Query: 2148 KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD-YSKDLSI 2206
APYK ++ HGFV+D G+KMSKS GN + PQ++ + +GA+ LRLWVAS+D Y++DL
Sbjct: 279 GKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338
Score = 190 bits (486), Expect = 2e-53
Identities = 61/143 (42%), Positives = 85/143 (59%), Gaps = 7/143 (4%)
Query: 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK 509
P+F+ HDGPPYANG H GHA+NKILKDII ++ M G+ PG+DCHG+PIE+++EK
Sbjct: 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEK 60
Query: 510 LYG-------KNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEAN 562
G + + E K R A +++Q+ F RLG+ +W+N YKTMD +
Sbjct: 61 ELGISGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMES 120
Query: 563 ELRAFGIIFKKGYVYHGLKPVNW 585
F + +KG +Y G K V W
Sbjct: 121 VWWVFKQLHEKGLLYRGYKVVPW 143
Score = 190 bits (486), Expect = 2e-53
Identities = 61/143 (42%), Positives = 85/143 (59%), Gaps = 7/143 (4%)
Query: 1600 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK 1659
P+F+ HDGPPYANG H GHA+NKILKDII ++ M G+ PG+DCHG+PIE+++EK
Sbjct: 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEK 60
Query: 1660 LYG-------KNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEAN 1712
G + + E K R A +++Q+ F RLG+ +W+N YKTMD +
Sbjct: 61 ELGISGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMES 120
Query: 1713 ELRAFGIIFKKGYVYHGLKPVNW 1735
F + +KG +Y G K V W
Sbjct: 121 VWWVFKQLHEKGLLYRGYKVVPW 143
>gnl|CDD|236959 PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE;
Provisional.
Length = 234
Score = 238 bits (610), Expect = 2e-71
Identities = 96/248 (38%), Positives = 142/248 (57%), Gaps = 21/248 (8%)
Query: 204 MLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISI-KKKI 261
M R + + G+ L L +HL VLR+K + + LF+G GGEY+A++ I KK++
Sbjct: 1 MPRLF--VLLAAGETLILDGEEAHHLVRVLRLKEGDELRLFDGDGGEYLAEITEIGKKEV 58
Query: 262 LIQIISFLFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNE 321
++I+ L E E P +TL QALP+ + +LI++K+ ELGV I P+I+ R +++L+ E
Sbjct: 59 ELEILEKLELEPEPPLRLTLAQALPKGDRLELILQKATELGVSAIIPLISERSVVKLDGE 118
Query: 322 RIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLIS-----KISCARILLSPRGRK 376
R KK RW+ I I A EQSGR +P + P I +L + +++L P
Sbjct: 119 RADKKLERWQKIAIEAAEQSGRTRIPEVRPPISLKEFLEELLPADLKAGLKLVLHPE--- 175
Query: 377 KLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAIL 436
+ +V LLIGPEGGF+ +E L E G +SLG RILRTETA+L ALA L
Sbjct: 176 ---------AGGKVLLLIGPEGGFSPEEIELLREAGFTPVSLGPRILRTETAALAALAAL 226
Query: 437 NGVWGEIK 444
+ G++
Sbjct: 227 QALLGDLG 234
Score = 169 bits (431), Expect = 3e-47
Identities = 66/161 (40%), Positives = 92/161 (57%), Gaps = 17/161 (10%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
QALP+ + +LI++K+ ELGV I P+I+ R +++L+ ER KK RW+ I I A EQS
Sbjct: 79 AQALPKGDRLELILQKATELGVSAIIPLISERSVVKLDGERADKKLERWQKIAIEAAEQS 138
Query: 1474 GRNILPVLAPNIYFNNWLIS-----KISCARILLSPRGRKKLSCWANNQSPQEVELLIGP 1528
GR +P + P I +L + +++L P + +V LLIGP
Sbjct: 139 GRTRIPEVRPPISLKEFLEELLPADLKAGLKLVLHPE------------AGGKVLLLIGP 186
Query: 1529 EGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 1569
EGGF+ +E L E G +SLG RILRTETA+L ALA L
Sbjct: 187 EGGFSPEEIELLREAGFTPVSLGPRILRTETAALAALAALQ 227
>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of bacterial
and eukaryotic mitochondrial isoleucyl tRNA synthetases.
This domain is found in isoleucyl tRNA synthetases
(IleRS), which belong to the class Ia aminoacyl tRNA
synthetases. It lies C-terminal to the catalytic core
domain, and recognizes and specifically binds to the tRNA
anticodon. This family includes bacterial and eukaryotic
mitochondrial members. IleRS catalyzes the transfer of
isoleucine to the 3'-end of its tRNA.
Length = 180
Score = 222 bits (569), Expect = 1e-66
Identities = 77/183 (42%), Positives = 117/183 (63%), Gaps = 4/183 (2%)
Query: 1056 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI 1115
IS+EIL +V E YR+IRNT RFLL N +DF+P + + +++E+D+YA+ + L KE+
Sbjct: 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEV 60
Query: 1116 LSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSL 1175
Y YEFH + L +C+ DL +FYLDI+KDRLY K+S RRSAQT ++HI +L
Sbjct: 61 REAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDAL 120
Query: 1176 LRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIR 1235
L+L++PIL FT+EE W + E++F + +LP+ + ++L K+ L +R
Sbjct: 121 LKLLAPILPFTAEEVWEHLPGEKKE----ESVFLEDWPELPEEWKDEELEEKWEKLLALR 176
Query: 1236 SKV 1238
+V
Sbjct: 177 DEV 179
Score = 222 bits (569), Expect = 1e-66
Identities = 77/183 (42%), Positives = 117/183 (63%), Gaps = 4/183 (2%)
Query: 2206 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI 2265
IS+EIL +V E YR+IRNT RFLL N +DF+P + + +++E+D+YA+ + L KE+
Sbjct: 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEV 60
Query: 2266 LSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSL 2325
Y YEFH + L +C+ DL +FYLDI+KDRLY K+S RRSAQT ++HI +L
Sbjct: 61 REAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDAL 120
Query: 2326 LRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIR 2385
L+L++PIL FT+EE W + E++F + +LP+ + ++L K+ L +R
Sbjct: 121 LKLLAPILPFTAEEVWEHLPGEKKE----ESVFLEDWPELPEEWKDEELEEKWEKLLALR 176
Query: 2386 SKV 2388
+V
Sbjct: 177 DEV 179
>gnl|CDD|218092 pfam04452, Methyltrans_RNA, RNA methyltransferase. RNA
methyltransferases modify nucleotides during ribosomal
RNA maturation in a site-specific manner. The
Escherichia coli member is specific for U1498
methylation.
Length = 224
Score = 224 bits (573), Expect = 1e-66
Identities = 96/224 (42%), Positives = 133/224 (59%), Gaps = 6/224 (2%)
Query: 219 LYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISI-KKKILIQIISFLFREIELP 276
+ L D +HL VLR+K + I LF+G GGEY+A++ I KK +L++I+ L ELP
Sbjct: 1 VTLTDEEAHHLVRVLRLKEGDEIKLFDGDGGEYLAEIEEISKKSVLVKILEKLEVNKELP 60
Query: 277 YTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIIS 336
ITL QALP+ + +LI++K+ ELGV I P+I+ R +++ + +R KK RW+ I I
Sbjct: 61 LKITLAQALPKGDRLELILQKATELGVDAIVPLISERSVVK-DGKRADKKLERWQKIAIE 119
Query: 337 ATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKK---LSCWANNQSPQEVELL 393
A EQSGR LP + P I F L +++L K LS + +V L+
Sbjct: 120 AAEQSGRTRLPEVLPPISFKELLEELDEADKLILYEEEAKSLGPLSELLASLKGGKVLLI 179
Query: 394 IGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 437
IGPEGGF+ KE L E G +SLG RILRTETA+L AL+ L
Sbjct: 180 IGPEGGFSPKEIELLKEAGFTPVSLGPRILRTETAALAALSALQ 223
Score = 172 bits (437), Expect = 3e-48
Identities = 67/159 (42%), Positives = 92/159 (57%), Gaps = 4/159 (2%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
QALP+ + +LI++K+ ELGV I P+I+ R +++ + +R KK RW+ I I A EQS
Sbjct: 66 AQALPKGDRLELILQKATELGVDAIVPLISERSVVK-DGKRADKKLERWQKIAIEAAEQS 124
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILLSPRGRKK---LSCWANNQSPQEVELLIGPEG 1530
GR LP + P I F L +++L K LS + +V L+IGPEG
Sbjct: 125 GRTRLPEVLPPISFKELLEELDEADKLILYEEEAKSLGPLSELLASLKGGKVLLIIGPEG 184
Query: 1531 GFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 1569
GF+ KE L E G +SLG RILRTETA+L AL+ L
Sbjct: 185 GFSPKEIELLKEAGFTPVSLGPRILRTETAALAALSALQ 223
>gnl|CDD|224303 COG1385, COG1385, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 246
Score = 217 bits (554), Expect = 2e-63
Identities = 95/246 (38%), Positives = 143/246 (58%), Gaps = 7/246 (2%)
Query: 203 KMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISI-KKK 260
+M R + G + L + +HL VLR+K + + LF+G GGE++A++ I KK+
Sbjct: 2 RMPRLFVDEELAEGATVILTGDEAHHLKRVLRLKEGDELRLFDGSGGEFLAEITKIGKKE 61
Query: 261 ILIQIISFLFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNN 320
L++I+ L ELP ITL QA+P+ K +LII+K+ ELGV I P+IT R +++L+
Sbjct: 62 ALLKIVEQLEPNPELPLKITLAQAIPKGDKLELIIQKATELGVSKIIPLITERSVVKLDG 121
Query: 321 ERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWL--ISKISCARILLSPRGRKKL 378
++ K RW+ I I A EQSGRN++P + P L I +++ + ++ L
Sbjct: 122 KKAAKLE-RWQKIAIEAAEQSGRNVVPEIKPPESLKELLKEIDDEDALKLIYEEKAKEGL 180
Query: 379 SCWANNQS--PQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAIL 436
++ +V L+IGPEGGF+E E L E G +SLG RILRTETA+L ALA L
Sbjct: 181 LALPLLEALPEGKVLLIIGPEGGFSEDEIELLREAGFTPVSLGPRILRTETAALAALAAL 240
Query: 437 NGVWGE 442
+ G+
Sbjct: 241 QALLGD 246
Score = 156 bits (397), Expect = 1e-42
Identities = 66/164 (40%), Positives = 95/164 (57%), Gaps = 5/164 (3%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
QA+P+ K +LII+K+ ELGV I P+IT R +++L+ ++ K RW+ I I A EQS
Sbjct: 83 AQAIPKGDKLELIIQKATELGVSKIIPLITERSVVKLDGKKAAKLE-RWQKIAIEAAEQS 141
Query: 1474 GRNILPVLAPNIYFNNWL--ISKISCARILLSPRGRKKLSCWANNQS--PQEVELLIGPE 1529
GRN++P + P L I +++ + ++ L ++ +V L+IGPE
Sbjct: 142 GRNVVPEIKPPESLKELLKEIDDEDALKLIYEEKAKEGLLALPLLEALPEGKVLLIIGPE 201
Query: 1530 GGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGELS 1573
GGF+E E L E G +SLG RILRTETA+L ALA L L
Sbjct: 202 GGFSEDEIELLREAGFTPVSLGPRILRTETAALAALAALQALLG 245
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 215 bits (548), Expect = 2e-56
Identities = 192/805 (23%), Positives = 330/805 (40%), Gaps = 136/805 (16%)
Query: 1571 ELSKR------EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKI 1624
EL+K E W WQE+ +H + RP F + PP G +H+GHA+
Sbjct: 14 ELAKGYEHREVEARWYPFWQERGYFHG-DEHDRTRPPFSIVLPPPNVTGSLHLGHALTAT 72
Query: 1625 LKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNK---ARALAYEK 1681
L+D+++++ M GF+ ++PG D G+ ++ +E K L E +++ R E+
Sbjct: 73 LQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVE----KELKKTEKKSRHDLGREAFLER 128
Query: 1682 IEQQKMDF-MRLG----ILG---EWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPV 1733
+ K + R+G LG +W TMD F + ++G +Y K +
Sbjct: 129 VWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLI 188
Query: 1734 NWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTP 1793
NWC DC++AL++ E+E+++ + ++ SF+ P L G G IV+ T+ P
Sbjct: 189 NWCPDCRTALSDLEVEHEEAHQGELW---SFAYP-----------LADGSGEIVVATTRP 234
Query: 1794 WTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLS 1853
T+ + A+ VHP DP + + +
Sbjct: 235 ETMLGDTAVAVHPL----------DPRYMALHGKKVR----------------------- 261
Query: 1854 KINFFHPLSNIDINYNRLSPIYLGDYITVDS--GTGIVHSAPAYGIEDFLIFKKQNMKDS 1911
HP++ R PI + D I VD GTG V PA+ DF + K+ ++
Sbjct: 262 -----HPIT------GRTFPI-VADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMI 309
Query: 1912 DIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTP 1971
+I P DG + G+ ++A K + L + + C R T
Sbjct: 310 TVIGP---DGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATI 366
Query: 1972 IIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFP-SWGKDRLKSMILNRPDWT 2028
+ + QW++ ++ + + AI A+ + +F P W + M N DW
Sbjct: 367 LEPLLSDQWYVRIEPLAR--------PAIEAVEQGRTRFIPEQWTNTYMAWM-RNIHDWC 417
Query: 2029 ISRQRHWGVPI-AFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAV 2087
ISRQ WG I A++ + +T E K E D+
Sbjct: 418 ISRQLWWGHQIPAWYCPDGHVTVARETPEACSTCGK---------------AELRQDE-- 460
Query: 2088 NYKKSNDTLDVWFDSGITHQTVI---RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSI 2144
D LD WF SG+ + + + + +P + G D W ++ +
Sbjct: 461 ------DVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGL 514
Query: 2145 ILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKD 2203
P++ + H V D KG+KMSK+KGN+I P + +GA+ LR +A+ T +D
Sbjct: 515 HFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRD 574
Query: 2204 LSISNEILNRVVETYRRIRNTL----RFLLANTSDFNPNINIIKISDMVEIDKYAIINIT 2259
+ ++ E +E YR N L RF L N S + D++ + +
Sbjct: 575 IKLAKE----RIEGYRAFANKLWNASRFALMNLSGYQERGEDPARLARTPADRWILARLQ 630
Query: 2260 NLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIW 2319
E + + F+ + + + +L +Y+++ K+ L + + ARRS Q +
Sbjct: 631 RAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEALASE--DPEARRSVQAVLV 688
Query: 2320 HINQSLLRLISPILSFTSEEAWSIF 2344
H Q+ RL+ P + F +EE W +
Sbjct: 689 HCLQTSYRLLHPFMPFITEELWHVL 713
Score = 207 bits (528), Expect = 6e-54
Identities = 183/772 (23%), Positives = 317/772 (41%), Gaps = 129/772 (16%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
RP F + PP G +H+GHA+ L+D+++++ M GF+ ++PG D G+ ++ +
Sbjct: 46 TRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIV 105
Query: 508 EKLYGKNLSPIEIQNK---ARALAYEKIEQQKMDF-MRLG----ILG---EWDNSYKTMD 556
EK L E +++ R E++ K + R+G LG +W TMD
Sbjct: 106 EK----ELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMD 161
Query: 557 FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSE 616
F + ++G +Y K +NWC DC++AL++ E+E+++ + ++ SF+
Sbjct: 162 EGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQGELW---SFAY 218
Query: 617 PEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILA 676
P L G G IV+ T+ P T+ + A+ VHP DP + +
Sbjct: 219 P-----------LADGSGEIVVATTRPETMLGDTAVAVHPL----------DPRYMALHG 257
Query: 677 FNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDS-- 734
+ HP++ R PI + D I VD
Sbjct: 258 KKVR----------------------------HPITG------RTFPI-VADAILVDPKF 282
Query: 735 GTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICS 794
GTG V PA+ DF + K+ ++ +I P DG + G+ ++A K +
Sbjct: 283 GTGAVKVTPAHDFNDFEVGKRHGLEMITVIGP---DGRMTAEAGPLAGLDRFEARKEVKR 339
Query: 795 YLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN 854
L + + C R T + + QW++ ++ + + AI A+
Sbjct: 340 LLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLAR--------PAIEAVE 391
Query: 855 --KIKFFP-SWGKDRLKSMILNRPDWTISRQRHWGVPI-AFFIHKKSGKLHPKTLELIEL 910
+ +F P W + M N DW ISRQ WG I A++ + +T E
Sbjct: 392 QGRTRFIPEQWTNTYMAWM-RNIHDWCISRQLWWGHQIPAWYCPDGHVTVARETPEACST 450
Query: 911 IAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVI---RGSHKKQ 967
K E D+ D LD WF SG+ + + + +
Sbjct: 451 CGKA---------------ELRQDE--------DVLDTWFSSGLWPFSTMGWPEQTDTLR 487
Query: 968 LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNII 1027
+P + G D W ++ + P++ + H V D KG+KMSK+KGN+I
Sbjct: 488 TFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVI 547
Query: 1028 KPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTL----RFLLANT 1082
P + +GA+ LR +A+ T +D+ ++ E +E YR N L RF L N
Sbjct: 548 DPLVITEQYGADALRFTLAALTAQGRDIKLAKE----RIEGYRAFANKLWNASRFALMNL 603
Query: 1083 SDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSF 1142
S + D++ + + E + + F+ + + + +L +
Sbjct: 604 SGYQERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDW 663
Query: 1143 YLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 1194
Y+++ K+ L + + ARRS Q + H Q+ RL+ P + F +EE W +
Sbjct: 664 YIELAKEALASE--DPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVL 713
>gnl|CDD|182786 PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional.
Length = 172
Score = 173 bits (441), Expect = 2e-49
Identities = 69/137 (50%), Positives = 90/137 (65%), Gaps = 1/137 (0%)
Query: 56 RAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSK 115
AK A EVPVGAVLV NN VI G+N+ I R+DPTAHAEI+ALR +L NYR
Sbjct: 23 LAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLL- 81
Query: 116 NYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGV 175
+ +YVTLEPC MCAGA++H R+G +++G KTGA GS++++ +NH +T GV
Sbjct: 82 DATLYVTLEPCVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGV 141
Query: 176 MQKQCEKLLKSFFIKRR 192
+ +C LL FF RR
Sbjct: 142 LADECAALLSDFFRMRR 158
Score = 86.4 bits (214), Expect = 5e-19
Identities = 32/83 (38%), Positives = 48/83 (57%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
EPC MCAGA++H R+G +++G KTGA GS++++ +NH +T GV+ +C L
Sbjct: 90 EPCVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGVLADECAAL 149
Query: 1399 LKSFFIKRRNFVKNKIQALPENR 1421
L FF RR +K +A
Sbjct: 150 LSDFFRMRRQEIKALKKAQRSTD 172
>gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport
and metabolism / Translation, ribosomal structure and
biogenesis].
Length = 152
Score = 172 bits (437), Expect = 3e-49
Identities = 68/149 (45%), Positives = 99/149 (66%), Gaps = 2/149 (1%)
Query: 41 MLIETDSPYLSPIPHRAKLALIAGEVPVGAVLVKNN-LVISYGYNQQITRNDPTAHAEII 99
L E D ++ AK A GEVPVGAV+V + +I+ G+N++ NDPTAHAEI+
Sbjct: 3 FLSEKDEDFMREALKEAKKAGDEGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEIL 62
Query: 100 ALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINL 159
A+R A++ L NYR K+ +YVTLEPC MCAGAII R+ ++YG KTGA GS++++
Sbjct: 63 AIRAAAETLGNYRL-KDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDI 121
Query: 160 FQEKKLNHHTILTGGVMQKQCEKLLKSFF 188
++ +LNH + GG+++++C LL FF
Sbjct: 122 LKDPRLNHRVEVYGGILEEECSALLSEFF 150
Score = 88.9 bits (221), Expect = 4e-20
Identities = 29/65 (44%), Positives = 45/65 (69%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
EPC MCAGAII R+ ++YG KTGA GS++++ ++ +LNH + GG+++++C L
Sbjct: 86 EPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPRLNHRVEVYGGILEEECSAL 145
Query: 1399 LKSFF 1403
L FF
Sbjct: 146 LSEFF 150
>gnl|CDD|129157 TIGR00046, TIGR00046, RNA methyltransferase, RsmE family. Members
of this protein family, previously called conserved
hypothetical protein TIGR00046, include the YggJ protein
of E. coli, which has now been shown to methylate U1498
in 16S rRNA [Protein synthesis, tRNA and rRNA base
modification].
Length = 240
Score = 157 bits (398), Expect = 9e-43
Identities = 82/237 (34%), Positives = 119/237 (50%), Gaps = 5/237 (2%)
Query: 203 KMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK- 260
+M Y+P + + L + +HL VLR+K + + L +G G Y ++ I KK
Sbjct: 1 RMRIVYHPEQ-LEEATISLTEEEAHHLVRVLRLKKGDKLKLLDGDGFIYHCEIKKISKKF 59
Query: 261 ILIQIISFLFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNN 320
+ +++ + ELP I L L + +K + II K ELGV I P R +++L+
Sbjct: 60 VKCELLEGESEKRELPLKIHLAIVLIKGKKMEFIIRKLTELGVSKIIPFNAERSVVKLDI 119
Query: 321 ERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSC 380
E IKK RW+ I I A EQSGRNI+P + P ++ + L+
Sbjct: 120 E-AIKKLERWQKIAIEAAEQSGRNIVPEIKPPKNLKEKC-AEAYEEALKLNFHPEASPLS 177
Query: 381 WANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 437
+ ++IGPEGGF+EKE L E G + LG RILRTETA L AL+IL
Sbjct: 178 ANLPIPAGNIVIIIGPEGGFSEKEIQLLKEKGFTPVLLGPRILRTETAPLYALSILQ 234
Score = 120 bits (303), Expect = 4e-30
Identities = 60/156 (38%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
L + +K + II K ELGV I P R +++L+ E IKK RW+ I I A EQS
Sbjct: 81 AIVLIKGKKMEFIIRKLTELGVSKIIPFNAERSVVKLDIE-AIKKLERWQKIAIEAAEQS 139
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFT 1533
GRNI+P + P ++ + L+ + ++IGPEGGF+
Sbjct: 140 GRNIVPEIKPPKNLKEKC-AEAYEEALKLNFHPEASPLSANLPIPAGNIVIIIGPEGGFS 198
Query: 1534 EKEENLAYECGVIILSLGKRILRTETASLVALAILN 1569
EKE L E G + LG RILRTETA L AL+IL
Sbjct: 199 EKEIQLLKEKGFTPVLLGPRILRTETAPLYALSILQ 234
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 167 bits (425), Expect = 1e-41
Identities = 178/801 (22%), Positives = 330/801 (41%), Gaps = 130/801 (16%)
Query: 1580 IKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFD 1639
I W E + Y + P F++ PP G +H+GHA+ L+DI+V++ M G
Sbjct: 69 IYNWWESQGYFKPNFDRGGDP-FVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRP 127
Query: 1640 AQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDF--------MR 1691
++PG D G+ ++ +EK+ I+ + R +++ + K + R
Sbjct: 128 TLWIPGTDHAGIATQLVVEKMLAS--EGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKR 185
Query: 1692 LGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYK 1751
LG +W T+D + AF + +KG +Y G VNW + ++A+++ E+EY
Sbjct: 186 LGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 245
Query: 1752 KKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYA 1811
++ Y+ + + + ++ I T+ P T+ + A+ V+PE D
Sbjct: 246 EEPGTLYYIKYRVAG--------------GSEDFLTIATTRPETLFGDVAIAVNPEDD-- 289
Query: 1812 LVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRL 1871
+ SK + ++ + + Y R
Sbjct: 290 ---------------------------------------RYSK--YIGKMAIVPMTYGRH 308
Query: 1872 SPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFG 1931
PI Y+ D GTG++ +P + D+L+ +K + I+N + DG TL
Sbjct: 309 VPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLP---ILNVMNKDG----TLNEVA 361
Query: 1932 GMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNE 1991
G+ ++A + + S L+++ E R I + QWF+ M+ + +
Sbjct: 362 GLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKA 421
Query: 1992 KKSLRESAITAINKI--KFFPSWGKDRLKSMILNRPDWTISRQRHWG--VPIAFFIHKKS 2047
K++ +T I + K + W + N DW ISRQ WG +P+ + + K
Sbjct: 422 LKAVENGELTIIPERFEKIYNHW--------LSNIKDWCISRQLWWGHRIPVWYIVGKDC 473
Query: 2048 GKLHPKTLELIELIAKKIELNG--IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGIT 2105
+ + E + K E G +EI+Q+ D+ LD WF S +
Sbjct: 474 EEDYIVARSAEEALEKAREKYGKDVEIYQDPDV-----------------LDTWFSSALW 516
Query: 2106 HQTVI----RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFV 2161
+ + + + +P + G D W ++ I + P+ + HG +
Sbjct: 517 PFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLI 576
Query: 2162 VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRI 2221
DS+G+KMSK+ GN+I P FG + LR +A +DL++S E L ++
Sbjct: 577 RDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKL 636
Query: 2222 RNTLRFLLAN---TSDFNPNINIIKISDMVEIDK------------YAIINITNLQKEIL 2266
N +F+L N SD + +I+ + DK + + + L +
Sbjct: 637 WNAGKFVLQNLPSQSDTSAWEHILAC----KFDKEESLLSLPLPECWVVSKLHELIDSVT 692
Query: 2267 SHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLL 2326
+ Y Y F + ++ + D +Y++ K RLY + NS R AQ + ++ +++L
Sbjct: 693 TSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNSALSR-AQAVLLYVFENIL 751
Query: 2327 RLISPILSFTSEEAWSIFSDK 2347
+L+ P + F +EE W +
Sbjct: 752 KLLHPFMPFVTEELWQALPYR 772
Score = 166 bits (421), Expect = 3e-41
Identities = 173/779 (22%), Positives = 323/779 (41%), Gaps = 129/779 (16%)
Query: 452 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLY 511
F++ PP G +H+GHA+ L+DI+V++ M G ++PG D G+ ++ +EK+
Sbjct: 90 FVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKML 149
Query: 512 GKNLSPIEIQNKARALAYEKIEQQKMDF--------MRLGILGEWDNSYKTMDFLNEANE 563
I+ + R +++ + K + RLG +W T+D
Sbjct: 150 AS--EGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAV 207
Query: 564 LRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSI 623
+ AF + +KG +Y G VNW + ++A+++ E+EY ++ Y+ + +
Sbjct: 208 VEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAG------- 260
Query: 624 FNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683
+ ++ I T+ P T+ + A+ V+PE D
Sbjct: 261 -------GSEDFLTIATTRPETLFGDVAIAVNPEDD------------------------ 289
Query: 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAP 743
+ SK + ++ + + Y R PI Y+ D GTG++ +P
Sbjct: 290 -----------------RYSK--YIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKISP 330
Query: 744 AYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLF 803
+ D+L+ +K + I+N + DG TL G+ ++A + + S L+++
Sbjct: 331 GHDHNDYLLARKLGLP---ILNVMNKDG----TLNEVAGLYWFEAREKLWSDLEETGLAV 383
Query: 804 NIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKI--KFFPS 861
E R I + QWF+ M+ + + K++ +T I + K +
Sbjct: 384 KKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNH 443
Query: 862 WGKDRLKSMILNRPDWTISRQRHWG--VPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 919
W + N DW ISRQ WG +P+ + + K + + E + K E G
Sbjct: 444 W--------LSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEKAREKYG 495
Query: 920 --IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVI----RGSHKKQLIFPAD 973
+EI+Q+ D+ LD WF S + + + + + +P
Sbjct: 496 KDVEIYQDPDV-----------------LDTWFSSALWPFSTLGWPDVSAEDFKKFYPTT 538
Query: 974 LYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLC 1033
+ G D W ++ I + P+ + HG + DS+G+KMSK+ GN+I P
Sbjct: 539 VLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTI 598
Query: 1034 NLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLAN---TSDFNPNIN 1090
FG + LR +A +DL++S E L ++ N +F+L N SD + +
Sbjct: 599 KEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEH 658
Query: 1091 IIKISDMVEIDK------------YAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSED 1138
I+ + DK + + + L + + Y Y F + ++ + D
Sbjct: 659 ILAC----KFDKEESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSD 714
Query: 1139 LGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 1197
+Y++ K RLY + NS R AQ + ++ +++L+L+ P + F +EE W +
Sbjct: 715 FADWYIEASKTRLYHSGDNSALSR-AQAVLLYVFENILKLLHPFMPFVTEELWQALPYR 772
>gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include
adenosine, guanine and cytosine deaminases. These
enzymes are Zn dependent and catalyze the deamination of
nucleosides. The zinc ion in the active site plays a
central role in the proposed catalytic mechanism,
activating a water molecule to form a hydroxide ion that
performs a nucleophilic attack on the substrate. The
functional enzyme is a homodimer. Cytosine deaminase
catalyzes the deamination of cytosine to uracil and
ammonia and is a member of the pyrimidine salvage
pathway. Cytosine deaminase is found in bacteria and
fungi but is not present in mammals; for this reason,
the enzyme is currently of interest for antimicrobial
drug design and gene therapy applications against
tumors. Some members of this family are tRNA-specific
adenosine deaminases that generate inosine at the first
position of their anticodon (position 34) of specific
tRNAs; this modification is thought to enlarge the codon
recognition capacity during protein synthesis. Other
members of the family are guanine deaminases which
deaminate guanine to xanthine as part of the utilization
of guanine as a nitrogen source.
Length = 109
Score = 145 bits (367), Expect = 2e-40
Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 2/103 (1%)
Query: 57 AKLALIAGEVPVGAVLVKNNL-VISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSK 115
A+ AL GEVP GAV+V ++ VI+ G+N+ DPTAHAEI+A+R A++ L +Y S
Sbjct: 8 ARKALAEGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLS- 66
Query: 116 NYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIIN 158
+Y TLEPC MCAGA++ R+ ++YG K G G +I
Sbjct: 67 GCTLYTTLEPCPMCAGALLWARIKRVVYGASDPKLGGIGFLIE 109
Score = 63.0 bits (154), Expect = 1e-11
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIIN 1373
EPC MCAGA++ R+ ++YG K G G +I
Sbjct: 75 EPCPMCAGALLWARIKRVVYGASDPKLGGIGFLIE 109
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional.
Length = 995
Score = 162 bits (413), Expect = 4e-40
Identities = 211/900 (23%), Positives = 351/900 (39%), Gaps = 176/900 (19%)
Query: 1576 EPGWIKKWQEKKIYH--QIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFY 1633
E GW + W++ + + K+ + KF++ PP G +HIGHA+ ++D +++++
Sbjct: 34 ESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYH 93
Query: 1634 NMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR-ALAYEKIEQQKMDFM-- 1690
M G + +VPG D G+ ++ +EK K +NK R L E+ ++ ++
Sbjct: 94 RMKGDETLWVPGTDHAGIATQVVVEKKLMKE------ENKTRHDLGREEFLKKVWEWKDK 147
Query: 1691 ----------RLGILGEWDNSYKTMD-FLNEA-NELRAFGIIFKKGYVYHGLKPVNWCFD 1738
RLG +W TMD ++A E AF +++ G +Y + VNWC
Sbjct: 148 HGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKE--AFVRLYEDGLIYRDTRLVNWCCY 205
Query: 1739 CKSALAEAEIE--------------YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKG 1784
K+A+++ E+E Y KK + + F++ ++ SG+
Sbjct: 206 LKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAY----PLED--------SGQE 253
Query: 1785 YIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNII 1844
IV+ T+ T+ + A+ VHP D +K +
Sbjct: 254 EIVVATTRIETMLGDVAVAVHP----------KDER------------------YK-KLH 284
Query: 1845 GICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDS--GTGIVHSAPAYGIEDFLI 1902
G K + HP +R PI D VD GTG V PA+ D+ I
Sbjct: 285 G--KELI-------HPFIP-----DRKIPIIA-DDELVDMEFGTGAVKITPAHDPNDYEI 329
Query: 1903 FKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSY 1962
K+ N+ IN DG F GM + + I LK+ L +
Sbjct: 330 AKRHNLP---FINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRL 386
Query: 1963 MHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMIL 2022
C R + QW++N + K +++R ++K PS ++ +
Sbjct: 387 PRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRN------GELKIIPSSHENVWYHWLE 440
Query: 2023 NRPDWTISRQRHWGVPI-AFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEF 2081
N DW ISRQ WG I A+ + K + P E ++A+ E E + K
Sbjct: 441 NIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEE-PWVVARSEE----EALEKAKKKFG 495
Query: 2082 LGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK---QLIFPADLYLEGSDQHRGWFHS 2138
L ++ ++ D LD WF SG+ + + + Q FP L GSD W
Sbjct: 496 LSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVAR 555
Query: 2139 SLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKP-------------QKL--C 2183
++ S+ L P+K + H V DS+G+KMSKSKGN+I P QKL
Sbjct: 556 MVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEG 615
Query: 2184 NL---------------F-------GAEILRLWVASTDYSKDLSISNEILNRVVETYR-- 2219
NL F G + LR + + Y++ N +NRVV YR
Sbjct: 616 NLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLA--YTQQGRNINLDINRVV-GYRHF 672
Query: 2220 --RIRNTLRFLLANTSDFNPNINIIKISDMVE-----IDKYAIINITNLQKEILSHYRMY 2272
++ N ++F L N DK+ + + KE+ ++ Y
Sbjct: 673 CNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEY 732
Query: 2273 EFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPI 2332
+F + +L YL+++K RL + + ++ LRL+ P+
Sbjct: 733 DFSEATQATYNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIG-LRLLHPM 791
Query: 2333 LSFTSEEAWSIFSDKNFYIESGETIFT------QLHYKLPKVYNSKKLLYKYMILKKIRS 2386
+ F +EE + Y+ E+I + + K++ I+K IRS
Sbjct: 792 MPFITEELYQRLP---NYLRKSESISIAKYPQPNPGWNNEALDEEMKIIMS--IVKSIRS 846
Score = 152 bits (386), Expect = 7e-37
Identities = 207/880 (23%), Positives = 342/880 (38%), Gaps = 174/880 (19%)
Query: 444 KASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPI 503
K+ + KF++ PP G +HIGHA+ ++D +++++ M G + +VPG D G+
Sbjct: 54 KSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIAT 113
Query: 504 EIQIEKLYGKNLSPIEIQNKAR-ALAYEKIEQQKMDFM------------RLGILGEWDN 550
++ +EK K +NK R L E+ ++ ++ RLG +W
Sbjct: 114 QVVVEKKLMKE------ENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSR 167
Query: 551 SYKTMD-FLNEA-NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE--------- 599
TMD ++A E AF +++ G +Y + VNWC K+A+++ E+E
Sbjct: 168 EVFTMDEQRSKAVKE--AFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTK 225
Query: 600 -----YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHV 654
Y KK + + F++ ++ SG+ IV+ T+ T+ + A+ V
Sbjct: 226 ITIPGYDKKVEVGVLWHFAY----PLED--------SGQEEIVVATTRIETMLGDVAVAV 273
Query: 655 HPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNI 714
HP D +K + G K + HP
Sbjct: 274 HP----------KDER------------------YK-KLHG--KELI-------HPFIP- 294
Query: 715 DINYNRLSPIYLGDYITVDS--GTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGN 772
+R PI D VD GTG V PA+ D+ I K+ N+ IN DG
Sbjct: 295 ----DRKIPIIA-DDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLP---FINIFTLDGK 346
Query: 773 FISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFI 832
F GM + + I LK+ L + C R + QW++
Sbjct: 347 INENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYV 406
Query: 833 NMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPI-AF 891
N + K +++R ++K PS ++ + N DW ISRQ WG I A+
Sbjct: 407 NCKDMAKRAVEAVRN------GELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAY 460
Query: 892 FIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFD 951
+ K + P E ++A+ E E + K L ++ ++ D LD WF
Sbjct: 461 RVISKGPETDPSDEE-PWVVARSEE----EALEKAKKKFGLSEEDFELEQDEDVLDTWFS 515
Query: 952 SGITHQTVIRGSHKK---QLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH 1008
SG+ + + + Q FP L GSD W ++ S+ L P+K + H
Sbjct: 516 SGLFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLH 575
Query: 1009 GFVVDSKGKKMSKSKGNIIKP-------------QKL--CNL---------------F-- 1036
V DS+G+KMSKSKGN+I P QKL NL F
Sbjct: 576 AMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPN 635
Query: 1037 -----GAEILRLWVASTDYSKDLSISNEILNRVVETYR----RIRNTLRFLLANTSDFNP 1087
G + LR + + Y++ N +NRVV YR ++ N ++F L
Sbjct: 636 GIPECGTDALRFGLLA--YTQQGRNINLDINRVV-GYRHFCNKLWNAVKFALMKLLKDFN 692
Query: 1088 NINIIKISDMVE-----IDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSF 1142
N DK+ + + KE+ ++ Y+F + +L
Sbjct: 693 LPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDV 752
Query: 1143 YLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIE 1202
YL+++K RL + + ++ LRL+ P++ F +EE + Y+
Sbjct: 753 YLELIKPRLSKQSDGERKQHAQDVLHTVLDIG-LRLLHPMMPFITEELYQRLP---NYLR 808
Query: 1203 SGETIFT------QLHYKLPKVYNSKKLLYKYMILKKIRS 1236
E+I + + K++ I+K IRS
Sbjct: 809 KSESISIAKYPQPNPGWNNEALDEEMKIIMS--IVKSIRS 846
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 145 bits (367), Expect = 1e-34
Identities = 208/849 (24%), Positives = 342/849 (40%), Gaps = 170/849 (20%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W W EK Y S ++P F++ PP G +HIGHA+ ++D I+++ M
Sbjct: 106 EKSWYA-WWEKSGYFGADAKS-SKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRM 163
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEK--LYGKNLSPIEIQNKARALAYEKIEQQK-----MD 1688
G++A +VPG D G+ ++ +EK + ++L+ +I + K + +
Sbjct: 164 SGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQ 223
Query: 1689 FMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC--KSALAEA 1746
RLG +W TMD AF ++K+G +Y ++ VNW DC ++A+++
Sbjct: 224 LRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNW--DCTLRTAISDV 281
Query: 1747 EIEY---KKK-------YDFSIYVGF--SFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPW 1794
E++Y K++ YD + G SF+ P L G G IV+ T+
Sbjct: 282 EVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYP-----------LEGGLGEIVVATTRIE 330
Query: 1795 TIPANQALHVHPEFD-YALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLS 1853
T+ + A+ +HP+ + Y +H K + FN G K I IC I L
Sbjct: 331 TMLGDTAIAIHPDDERYKHLHGK-----FAVHPFN---------GRKLPI--ICDAI-LV 373
Query: 1854 KINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 1913
NF GTG V PA+ DF + K+ N+ +
Sbjct: 374 DPNF---------------------------GTGAVKITPAHDPNDFEVGKRHNL---EF 403
Query: 1914 INPVMDDGNFISTL--PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTP 1971
IN DDG I++ F GM + A + + L+K + E C R
Sbjct: 404 INIFTDDGK-INSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDV 462
Query: 1972 IIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISR 2031
+ QWF+N + K++L + K++F P K + N DW ISR
Sbjct: 463 VEPMIKPQWFVNCSSMA---KQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISR 519
Query: 2032 QRHWGVPI-AFFIHKKSGKLHPKTLELIEL-----------IAKKIELNGIEIWQNLDIK 2079
Q WG I A+++ TLE +L +A+ +E Q K
Sbjct: 520 QLWWGHRIPAWYV----------TLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGK 569
Query: 2080 EFLGDDAVNYKKSNDTLDVWFDSGITHQTVI---RGSHKKQLIFPADLYLEGSDQHRGWF 2136
+F + D LD WF SG+ +V+ + + +P + G D W
Sbjct: 570 KF------ELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWV 623
Query: 2137 HSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEIL----- 2191
++ + L P++ + H + D+ G+KMSKS GN+I P ++ N E L
Sbjct: 624 ARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLE 683
Query: 2192 -------RLWVASTDYSKDL--------------------SISNEI---LNRVVETYR-- 2219
L VA KD + S++I + RVV YR
Sbjct: 684 EGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVV-GYRQW 742
Query: 2220 --RIRNTLRFLLAN-TSDFNPNINIIKISDMVEIDKYAIINITNLQKEI---LSHYRMYE 2273
++ N +RF ++ D+ P + + M K+ I+++ N K I +S YE
Sbjct: 743 CNKLWNAVRFAMSKLGDDYTPPAT-LSVETMPFSCKW-ILSVLN--KAISKTVSSLDAYE 798
Query: 2274 FHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKN-SHARRSAQTSIWHINQSLLRLISPI 2332
F S + + +++ +K + R +AQ ++W + LRL+ P
Sbjct: 799 FSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPF 858
Query: 2333 LSFTSEEAW 2341
+ F +EE W
Sbjct: 859 MPFVTEELW 867
Score = 142 bits (360), Expect = 8e-34
Identities = 202/830 (24%), Positives = 336/830 (40%), Gaps = 168/830 (20%)
Query: 445 ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIE 504
A ++P F++ PP G +HIGHA+ ++D I+++ M G++A +VPG D G+ +
Sbjct: 123 AKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQ 182
Query: 505 IQIEK--LYGKNLSPIEIQNKARALAYEKIEQQK-----MDFMRLGILGEWDNSYKTMDF 557
+ +EK + ++L+ +I + K + + RLG +W TMD
Sbjct: 183 VVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDE 242
Query: 558 LNEANELRAFGIIFKKGYVYHGLKPVNWCFDC--KSALAEAEIEY---KKK-------YD 605
AF ++K+G +Y ++ VNW DC ++A+++ E++Y K++ YD
Sbjct: 243 QRSKAVTEAFVRLYKEGLIYRDIRLVNW--DCTLRTAISDVEVDYIDIKERTLLKVPGYD 300
Query: 606 FSIYVGF--SFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFD-YAL 662
+ G SF+ P L G G IV+ T+ T+ + A+ +HP+ + Y
Sbjct: 301 KPVEFGVLTSFAYP-----------LEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKH 349
Query: 663 VHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLS 722
+H K + FN G K I IC I L NF
Sbjct: 350 LHGK-----FAVHPFN---------GRKLPI--ICDAI-LVDPNF--------------- 377
Query: 723 PIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTL--PLF 780
GTG V PA+ DF + K+ N+ + IN DDG I++ F
Sbjct: 378 ------------GTGAVKITPAHDPNDFEVGKRHNL---EFINIFTDDGK-INSNGGSEF 421
Query: 781 GGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKN 840
GM + A + + L+K + E C R + QWF+N +
Sbjct: 422 AGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMA-- 479
Query: 841 EKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPI-AFFIHKKSGK 899
K++L + K++F P K + N DW ISRQ WG I A+++
Sbjct: 480 -KQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYV------ 532
Query: 900 LHPKTLELIEL-----------IAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDV 948
TLE +L +A+ +E Q K+F + D LD
Sbjct: 533 ----TLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKF------ELSQDPDVLDT 582
Query: 949 WFDSGITHQTVI---RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKAL 1005
WF SG+ +V+ + + +P + G D W ++ + L P++ +
Sbjct: 583 WFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKV 642
Query: 1006 LTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEIL------------RLWVASTDYSKD 1053
H + D+ G+KMSKS GN+I P ++ N E L L VA KD
Sbjct: 643 YLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKD 702
Query: 1054 L--------------------SISNEI---LNRVVETYR----RIRNTLRFLLAN-TSDF 1085
+ S++I + RVV YR ++ N +RF ++ D+
Sbjct: 703 FPNGIAECGTDALRFALVSYTAQSDKINLDILRVV-GYRQWCNKLWNAVRFAMSKLGDDY 761
Query: 1086 NPNINIIKISDMVEIDKYAIINITNLQKEI---LSHYRMYEFHMIVSKLQIYCSEDLGSF 1142
P + + M K+ I+++ N K I +S YEF S + +
Sbjct: 762 TPPAT-LSVETMPFSCKW-ILSVLN--KAISKTVSSLDAYEFSDAASTVYSWWQYQFCDV 817
Query: 1143 YLDILKDRLYTTKKN-SHARRSAQTSIWHINQSLLRLISPILSFTSEEAW 1191
+++ +K + R +AQ ++W + LRL+ P + F +EE W
Sbjct: 818 FIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELW 867
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases.
Catalytic core domain of isoleucyl, leucyl, valyl and
methioninyl tRNA synthetases. These class I enzymes are
all monomers. However, in some species, MetRS functions
as a homodimer, as a result of an additional C-terminal
domain. These enzymes aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic class
I HIGH and KMSKS motifs, which are involved in ATP
binding. Enzymes in this subfamily share an insertion in
the core domain, which is subject to both deletions and
rearrangements. This editing region hydrolyzes mischarged
cognate tRNAs and thus prevents the incorporation of
chemically similar amino acids. MetRS has a significantly
shorter insertion, which lacks the editing function.
Length = 312
Score = 135 bits (341), Expect = 3e-34
Identities = 66/234 (28%), Positives = 95/234 (40%), Gaps = 63/234 (26%)
Query: 819 KTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWT 878
+ R T QWF +M K +E + A+ + K P K+R+++ + + DW
Sbjct: 131 RGTHPVRITEQWFFDMPK--------FKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWA 182
Query: 879 ISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVN 938
ISRQR+W G +
Sbjct: 183 ISRQRYW---------------------------------GTPL---------------- 193
Query: 939 YKKSNDTLDVWFDSGITHQTVIR---GSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSII 995
D DVWFDSGI + + +PAD +L G D RGW + + +
Sbjct: 194 ---PEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVA 250
Query: 996 LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 1049
L P K LL HGFV+D G+KMSKSKGN+I P + +GA+ LR ++ S
Sbjct: 251 LFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLA 304
Score = 135 bits (341), Expect = 3e-34
Identities = 66/234 (28%), Positives = 95/234 (40%), Gaps = 63/234 (26%)
Query: 1969 KTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWT 2028
+ R T QWF +M K +E + A+ + K P K+R+++ + + DW
Sbjct: 131 RGTHPVRITEQWFFDMPK--------FKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWA 182
Query: 2029 ISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVN 2088
ISRQR+W G +
Sbjct: 183 ISRQRYW---------------------------------GTPL---------------- 193
Query: 2089 YKKSNDTLDVWFDSGITHQTVIR---GSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSII 2145
D DVWFDSGI + + +PAD +L G D RGW + + +
Sbjct: 194 ---PEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVA 250
Query: 2146 LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 2199
L P K LL HGFV+D G+KMSKSKGN+I P + +GA+ LR ++ S
Sbjct: 251 LFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLA 304
Score = 122 bits (309), Expect = 4e-30
Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 7/145 (4%)
Query: 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 510
KF + PPYANG +H+GHA+ I+ D I ++ M G++ ++PG+D HG+PIE++ E+
Sbjct: 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60
Query: 511 YGKNLSPIEIQ---NKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAF 567
G+ I I+ + E + K DF RLGI +W + Y T + F
Sbjct: 61 GGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120
Query: 568 GIIFKKGYVYHGLKPV----NWCFD 588
+++KG +Y G PV W FD
Sbjct: 121 SRLYEKGLIYRGTHPVRITEQWFFD 145
Score = 122 bits (309), Expect = 4e-30
Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 7/145 (4%)
Query: 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 1660
KF + PPYANG +H+GHA+ I+ D I ++ M G++ ++PG+D HG+PIE++ E+
Sbjct: 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60
Query: 1661 YGKNLSPIEIQ---NKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAF 1717
G+ I I+ + E + K DF RLGI +W + Y T + F
Sbjct: 61 GGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120
Query: 1718 GIIFKKGYVYHGLKPV----NWCFD 1738
+++KG +Y G PV W FD
Sbjct: 121 SRLYEKGLIYRGTHPVRITEQWFFD 145
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases.
Valine amino-acyl tRNA synthetase (ValRS) catalytic core
domain. This enzyme is a monomer which aminoacylates the
2'-OH of the nucleotide at the 3' of the appropriate
tRNA. The core domain is based on the Rossman fold and is
responsible for the ATP-dependent formation of the enzyme
bound aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. ValRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically similar
amino acids.
Length = 382
Score = 135 bits (343), Expect = 7e-34
Identities = 67/242 (27%), Positives = 100/242 (41%), Gaps = 34/242 (14%)
Query: 815 CWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINK--IKFFPSWGKDRLKSMIL 872
C R I QWF+ + K L + A+ A+ + IKF P + R ++ +
Sbjct: 156 CSRSGDVIEPLLKPQWFVKV--------KDLAKKALEAVKEGDIKFVPERMEKRYENWLE 207
Query: 873 NRPDWTISRQRHWGVPIAFFIHKKSGKL--HPKTLELIELIAKKIELNGIEIWQNLDIKE 930
N DW ISRQ WG I + K G + E I+ A + +
Sbjct: 208 NIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPC----------- 256
Query: 931 FLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-----SHKKQLIFPADLYLEGSDQHRGW 985
K+ D LD WF S + + + KK +P L + G D W
Sbjct: 257 ----GGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKK--FYPTSLLVTGHDIIFFW 310
Query: 986 FHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWV 1045
++ + L P+K + HG V D G+KMSKS GN+I P + + +GA+ LR +
Sbjct: 311 VARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTL 370
Query: 1046 AS 1047
AS
Sbjct: 371 AS 372
Score = 135 bits (343), Expect = 7e-34
Identities = 67/242 (27%), Positives = 100/242 (41%), Gaps = 34/242 (14%)
Query: 1965 CWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINK--IKFFPSWGKDRLKSMIL 2022
C R I QWF+ + K L + A+ A+ + IKF P + R ++ +
Sbjct: 156 CSRSGDVIEPLLKPQWFVKV--------KDLAKKALEAVKEGDIKFVPERMEKRYENWLE 207
Query: 2023 NRPDWTISRQRHWGVPIAFFIHKKSGKL--HPKTLELIELIAKKIELNGIEIWQNLDIKE 2080
N DW ISRQ WG I + K G + E I+ A + +
Sbjct: 208 NIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPC----------- 256
Query: 2081 FLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-----SHKKQLIFPADLYLEGSDQHRGW 2135
K+ D LD WF S + + + KK +P L + G D W
Sbjct: 257 ----GGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKK--FYPTSLLVTGHDIIFFW 310
Query: 2136 FHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWV 2195
++ + L P+K + HG V D G+KMSKS GN+I P + + +GA+ LR +
Sbjct: 311 VARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTL 370
Query: 2196 AS 2197
AS
Sbjct: 371 AS 372
Score = 106 bits (266), Expect = 7e-24
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK 509
P F++ PP G +H+GHA+N ++DII ++ M G++ + PG D G+ ++ +EK
Sbjct: 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEK 60
Query: 510 LYGK------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANE 563
G +L E K E + + RLG +W Y TMD
Sbjct: 61 KLGIEGKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAV 120
Query: 564 LRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYK 601
AF +++KG +Y + VNWC ++A+++ E+ +
Sbjct: 121 QEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEVCSR 158
Score = 106 bits (266), Expect = 7e-24
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 1600 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK 1659
P F++ PP G +H+GHA+N ++DII ++ M G++ + PG D G+ ++ +EK
Sbjct: 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEK 60
Query: 1660 LYGK------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANE 1713
G +L E K E + + RLG +W Y TMD
Sbjct: 61 KLGIEGKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAV 120
Query: 1714 LRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYK 1751
AF +++KG +Y + VNWC ++A+++ E+ +
Sbjct: 121 QEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEVCSR 158
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases belong
to two families so broadly different that they are
represented by separate models. This model includes both
eubacterial and mitochondrial leucyl-tRNA synthetases. It
generates higher scores for some valyl-tRNA synthetases
than for any archaeal or eukaryotic cytosolic leucyl-tRNA
synthetase. Note that the enzyme from Aquifex aeolicus is
split into alpha and beta chains; neither chain is long
enough to score above the trusted cutoff, but the alpha
chain scores well above the noise cutoff. The beta chain
must be found by a model and search designed for partial
length matches [Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 136 bits (343), Expect = 7e-32
Identities = 183/913 (20%), Positives = 314/913 (34%), Gaps = 217/913 (23%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W +KW E K + ++ S ++PK+ + PY +G +H+GH N + D++ ++Y M
Sbjct: 7 EEKWQQKWDENKTF-KVTDDS-SKPKYYILSMFPYPSGALHMGHVRNYTITDVLSRYYRM 64
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGIL 1695
G++ + G+D G+P E + I+ YE I K LG
Sbjct: 65 KGYNVLHPIGWDAFGLPAE----------NAAIKRGIHPAKWTYENIANMKKQLQALGFS 114
Query: 1696 GEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA----------- 1744
+WD T D F +F+KG Y VNWC + + LA
Sbjct: 115 YDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSW 174
Query: 1745 --EAEIEYKKKYDFSIYVGFSFSE------------PEKIKSI--------------FNL 1776
+ +E K+ + + + +++E PE +K + F +
Sbjct: 175 RGDTPVEKKELKQWFLKIT-AYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKI 233
Query: 1777 KNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKK 1836
+ I ++T+ P TI L + PE +N+P + AF +K L K
Sbjct: 234 AD---HDEKITVFTTRPDTIFGVTYLALAPEHPLVEKAAENNPKV---AAF--IKKILNK 285
Query: 1837 FGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYG 1896
+ K + I HPL+ I PI++ +Y+ ++ GTG V PA+
Sbjct: 286 TVAERTKATKEKKGVDTGIKAIHPLTGEKI------PIWVANYVLMEYGTGAVMGVPAHD 339
Query: 1897 IEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIE 1956
DF +K + I PV+D K L +Y + + +
Sbjct: 340 ERDFEFAQKYGLP----IKPVIDPAE--------------KDLSLTAAYTEDGVLVNS-- 379
Query: 1957 MFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDR 2016
E + ++ + II K + LR
Sbjct: 380 -GEFNGLNSSEARNAII-----DMLEKEGKGKRKVNYRLR-------------------- 413
Query: 2017 LKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIE---------L 2067
DW SRQR+WG PI IH + G + P E + +I + L
Sbjct: 414 ---------DWGFSRQRYWGEPIP-IIHCEDGGVVPVPEEDLPVILPEDVVYDGDGGSPL 463
Query: 2068 NGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI-------- 2119
+ I W N+ + DT+D + S + + +
Sbjct: 464 SRIPEWVNVTCPSC----GKPALRETDTMDTFAGSSWYYLRYLDPKNTDGPFDKEKAEYW 519
Query: 2120 FPADLYLEGSDQ------HRGWFHSSLLTSIILNKSAPYKALLTHGFV------------ 2161
P DLY+ G + + +FH L +N P+K L+ G V
Sbjct: 520 LPVDLYIGGIEHAILHLLYARFFHKFLRDIGYVNTKEPFKKLINQGMVLGFYYPPNGKVP 579
Query: 2162 -------------------VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-STDYS 2201
V +KMSKSKGN I PQ++ +GA+ LRL++ +
Sbjct: 580 ADVLTERDEKGKDKAGGELVYVGYEKMSKSKGNGIDPQEIVESYGADALRLFIMFMGPIA 639
Query: 2202 KDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNL 2261
L + L R+ N L + + ++ + E K ++
Sbjct: 640 ASLEWNESGLEGARRFLDRVWN-----LVYEITGELDAASLTVTALEEAQKELRRDVHKF 694
Query: 2262 QKEILSHY-RMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWH 2320
K++ + F+ +S + ++ LY KK + +
Sbjct: 695 LKKVTEDLEKRESFNTAISAMMELLNK-------------LYKAKKEALMLEYLKG---- 737
Query: 2321 INQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMI 2380
+ ++SP +EE W + S I K P V + + K +I
Sbjct: 738 ----FVTVLSPFAPHLAEELWE-------KLGSEPFIIDN--AKWPVVDETALVEDKTLI 784
Query: 2381 LKKIRSKVMQKLE 2393
+ ++ K K+
Sbjct: 785 VVQVNGKFRAKIT 797
Score = 126 bits (319), Expect = 5e-29
Identities = 176/891 (19%), Positives = 303/891 (34%), Gaps = 215/891 (24%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
++PK+ + PY +G +H+GH N + D++ ++Y M G++ + G+D G+P E
Sbjct: 27 SKPKYYILSMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPIGWDAFGLPAE--- 83
Query: 508 EKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAF 567
+ I+ YE I K LG +WD T D F
Sbjct: 84 -------NAAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIF 136
Query: 568 GIIFKKGYVYHGLKPVNWCFDCKSALA-------------EAEIEYKKKYDFSIYVGFSF 614
+F+KG Y VNWC + + LA + +E K+ + + + ++
Sbjct: 137 LELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGDTPVEKKELKQWFLKIT-AY 195
Query: 615 SE------------PEKIKSI--------------FNLKNLPSGKGYIVIWTSTPWTIPA 648
+E PE +K + F + + I ++T+ P TI
Sbjct: 196 AEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIAD---HDEKITVFTTRPDTIFG 252
Query: 649 NQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFF 708
L + PE +N+P + AF +K L K + K + I
Sbjct: 253 VTYLALAPEHPLVEKAAENNPKV---AAF--IKKILNKTVAERTKATKEKKGVDTGIKAI 307
Query: 709 HPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768
HPL+ I PI++ +Y+ ++ GTG V PA+ DF +K + I PV+
Sbjct: 308 HPLTGEKI------PIWVANYVLMEYGTGAVMGVPAHDERDFEFAQKYGLP----IKPVI 357
Query: 769 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTL 828
D K L +Y + + + E + ++ + II
Sbjct: 358 DPAE--------------KDLSLTAAYTEDGVLVNS---GEFNGLNSSEARNAII----- 395
Query: 829 QWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVP 888
K + LR DW SRQR+WG P
Sbjct: 396 DMLEKEGKGKRKVNYRLR-----------------------------DWGFSRQRYWGEP 426
Query: 889 IAFFIHKKSGKLHPKTLELIELIAKKIE---------LNGIEIWQNLDIKEFLGDDAVNY 939
I IH + G + P E + +I + L+ I W N+
Sbjct: 427 IP-IIHCEDGGVVPVPEEDLPVILPEDVVYDGDGGSPLSRIPEWVNVTCPSC----GKPA 481
Query: 940 KKSNDTLDVWFDSGITHQTVIRGSHKKQLI--------FPADLYLEGSDQ------HRGW 985
+ DT+D + S + + + P DLY+ G + + +
Sbjct: 482 LRETDTMDTFAGSSWYYLRYLDPKNTDGPFDKEKAEYWLPVDLYIGGIEHAILHLLYARF 541
Query: 986 FHSSLLTSIILNKSAPYKALLTHGFV-------------------------------VDS 1014
FH L +N P+K L+ G V V
Sbjct: 542 FHKFLRDIGYVNTKEPFKKLINQGMVLGFYYPPNGKVPADVLTERDEKGKDKAGGELVYV 601
Query: 1015 KGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-STDYSKDLSISNEILNRVVETYRRIRN 1073
+KMSKSKGN I PQ++ +GA+ LRL++ + L + L R+ N
Sbjct: 602 GYEKMSKSKGNGIDPQEIVESYGADALRLFIMFMGPIAASLEWNESGLEGARRFLDRVWN 661
Query: 1074 TLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMIVSKLQ 1132
L + + ++ + E K ++ K++ + F+ +S +
Sbjct: 662 -----LVYEITGELDAASLTVTALEEAQKELRRDVHKFLKKVTEDLEKRESFNTAISAMM 716
Query: 1133 IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWS 1192
++ LY KK + + + ++SP +EE W
Sbjct: 717 ELLNK-------------LYKAKKEALMLEYLKG--------FVTVLSPFAPHLAEELWE 755
Query: 1193 IFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLE 1243
+ S I K P V + + K +I+ ++ K K+
Sbjct: 756 -------KLGSEPFIIDN--AKWPVVDETALVEDKTLIVVQVNGKFRAKIT 797
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 129 bits (327), Expect = 8e-30
Identities = 141/560 (25%), Positives = 228/560 (40%), Gaps = 152/560 (27%)
Query: 1576 EPGWIKKWQEKKIYHQIRKA----SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVK 1631
E W +KW+EK + + SI P PP G +H+GHA+N L+DI+++
Sbjct: 15 EAKWYQKWEEKGYFKPDDNSKKPFSIVIP-------PPNVTGSLHMGHALNNTLQDILIR 67
Query: 1632 FYNMDGFDAQYVPGYDCH-GMPIEIQIEK-LYGKNLSPIEI----------QNKARALAY 1679
+ M G++ ++PG D H G+ ++ +E+ L + S ++ + K
Sbjct: 68 YKRMQGYNTLWLPGTD-HAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEE---S 123
Query: 1680 EKI--EQQKMDFMRLGILGEWDNSYKTMD-FLNEA-NELRAFGIIFKKGYVYHGLKPVNW 1735
Q + RLG +W TMD L++A E F +++KG +Y G + VNW
Sbjct: 124 GGTITNQLR----RLGASCDWSRERFTMDEGLSKAVRE--VFVRLYEKGLIYRGKRLVNW 177
Query: 1736 CFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWT 1795
++AL++ E+EYK+ ++ P L + G Y+V+ T+ P T
Sbjct: 178 DPKLQTALSDLEVEYKEV-KGKLW---HIRYP--------LAD---GSDYLVVATTRPET 222
Query: 1796 IPANQALHVHPEFD--YALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLS 1853
+ + A+ V+PE D Y ++IG K + L
Sbjct: 223 MLGDTAVAVNPE-DERYK------------------------------HLIG--KTVIL- 248
Query: 1854 KINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 1913
PL R PI +Y+ + GTG V PA+ DF + K+ N+ +
Sbjct: 249 ------PLVG------REIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNL---PM 293
Query: 1914 INPVMDDGNFISTLPL-FGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPI 1972
IN +MD+ I+ P + G+ ++A K I + L++ L IE HS H R I
Sbjct: 294 IN-IMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVI 352
Query: 1973 IYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTIS 2030
+ QWF+ M K L + A+ A+ +IKF P + + N DW IS
Sbjct: 353 EPYLSDQWFVKM--------KPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCIS 404
Query: 2031 RQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAV--- 2087
RQ WG H+ I W + D + ++G +
Sbjct: 405 RQLWWG-------HR------------------------IPAWYDEDGEVYVGREEPEAR 433
Query: 2088 ---NYKKSNDTLDVWFDSGI 2104
+ D LD WF S +
Sbjct: 434 EKALLTQDEDVLDTWFSSAL 453
Score = 121 bits (306), Expect = 2e-27
Identities = 132/524 (25%), Positives = 215/524 (41%), Gaps = 141/524 (26%)
Query: 458 PPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCH-GMPIEIQIEK-LYGKNL 515
PP G +H+GHA+N L+DI++++ M G++ ++PG D H G+ ++ +E+ L +
Sbjct: 44 PPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTD-HAGIATQMVVERQLAAEGK 102
Query: 516 SPIEI----------QNKARALAYEKI--EQQKMDFMRLGILGEWDNSYKTMD-FLNEA- 561
S ++ + K Q + RLG +W TMD L++A
Sbjct: 103 SRHDLGREKFLEKVWEWKEE---SGGTITNQLR----RLGASCDWSRERFTMDEGLSKAV 155
Query: 562 NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIK 621
E F +++KG +Y G + VNW ++AL++ E+EYK+ ++ P
Sbjct: 156 RE--VFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEV-KGKLW---HIRYP---- 205
Query: 622 SIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFD--YALVHIKNDPPLLLILAFNL 679
L + G Y+V+ T+ P T+ + A+ V+PE D Y
Sbjct: 206 ----LAD---GSDYLVVATTRPETMLGDTAVAVNPE-DERYK------------------ 239
Query: 680 VKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIV 739
++IG K + L PL R PI +Y+ + GTG V
Sbjct: 240 ------------HLIG--KTVIL-------PLVG------REIPIIADEYVDPEFGTGAV 272
Query: 740 HSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPL-FGGMSIWKASKLICSYLKK 798
PA+ DF + K+ N+ +IN +MD+ I+ P + G+ ++A K I + L++
Sbjct: 273 KITPAHDPNDFEVGKRHNL---PMIN-IMDEDGTINENPGEYQGLDRFEARKAIVADLEE 328
Query: 799 SKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KI 856
L IE HS H R I + QWF+ M K L + A+ A+ +I
Sbjct: 329 LGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKM--------KPLAKPALEAVENGEI 380
Query: 857 KFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIE 916
KF P + + N DW ISRQ WG H+
Sbjct: 381 KFVPERWEKTYFHWMENIQDWCISRQLWWG-------HR--------------------- 412
Query: 917 LNGIEIWQNLDIKEFLGDDAV------NYKKSNDTLDVWFDSGI 954
I W + D + ++G + + D LD WF S +
Sbjct: 413 ---IPAWYDEDGEVYVGREEPEAREKALLTQDEDVLDTWFSSAL 453
Score = 76.7 bits (190), Expect = 1e-13
Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 25/207 (12%)
Query: 1001 PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL-WVASTDYSKDLSISNE 1059
P+K + HG V D +G+KMSKSKGN+I P L + +GA+ LR A +D+ E
Sbjct: 503 PFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEE 562
Query: 1060 ILNRVVETYR----RIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI 1115
VE YR ++ N RF+L N + + ++ D++ + + E+
Sbjct: 563 R----VEGYRNFANKLWNASRFVLMNLEGADVG-ELPDPEELSLADRWILSRLNRTVAEV 617
Query: 1116 LSHYRMYEFHMIVSKLQ-----IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWH 1170
Y F L +C +YL++ K L K R+ + ++ +
Sbjct: 618 TEALDKYRFDEAARALYEFIWNEFC-----DWYLELAKPVLQEAAK-----RATRATLAY 667
Query: 1171 INQSLLRLISPILSFTSEEAWSIFSDK 1197
+ + +LRL+ P + F +EE W +
Sbjct: 668 VLEQILRLLHPFMPFITEELWQKLAPL 694
Score = 76.7 bits (190), Expect = 1e-13
Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 25/207 (12%)
Query: 2151 PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL-WVASTDYSKDLSISNE 2209
P+K + HG V D +G+KMSKSKGN+I P L + +GA+ LR A +D+ E
Sbjct: 503 PFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEE 562
Query: 2210 ILNRVVETYR----RIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI 2265
VE YR ++ N RF+L N + + ++ D++ + + E+
Sbjct: 563 R----VEGYRNFANKLWNASRFVLMNLEGADVG-ELPDPEELSLADRWILSRLNRTVAEV 617
Query: 2266 LSHYRMYEFHMIVSKLQ-----IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWH 2320
Y F L +C +YL++ K L K R+ + ++ +
Sbjct: 618 TEALDKYRFDEAARALYEFIWNEFC-----DWYLELAKPVLQEAAK-----RATRATLAY 667
Query: 2321 INQSLLRLISPILSFTSEEAWSIFSDK 2347
+ + +LRL+ P + F +EE W +
Sbjct: 668 VLEQILRLLHPFMPFITEELWQKLAPL 694
>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase
zinc-binding region.
Length = 104
Score = 104 bits (262), Expect = 3e-26
Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 57 AKLALIA-GEVPVGAVLVKNNL-VISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS 114
AK A PVGAV+VKN+ +I+ GYN + DPT HAE A+R A +L +
Sbjct: 15 AKRAYTPYSNFPVGAVIVKNDGGIIATGYNGENAGYDPTIHAERNAIRNAGRLGEGIKL- 73
Query: 115 KNYKIYVTLEPCAMCAGAIIHVRLGEIIYGT 145
+ +YVTLEPC MC AII + ++++GT
Sbjct: 74 EGATLYVTLEPCGMCRQAIIESGIKKVVFGT 104
Score = 38.5 bits (90), Expect = 0.006
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGT 1360
EPC MC AII + ++++GT
Sbjct: 83 EPCGMCRQAIIESGIKKVVFGT 104
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic
family. The leucyl-tRNA synthetases belong to two
families so broadly different that they are represented
by separate models. This model includes both archaeal and
cytosolic eukaryotic leucyl-tRNA synthetases; the
eubacterial and mitochondrial forms differ so
substantially that some other tRNA ligases score higher
by this model than does any eubacterial LeuS [Protein
synthesis, tRNA aminoacylation].
Length = 938
Score = 99.5 bits (248), Expect = 1e-20
Identities = 160/871 (18%), Positives = 300/871 (34%), Gaps = 190/871 (21%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASIN-RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYN 1634
E W K+W+E I+ +A + R KF L PY NG +H GH + ++ +F
Sbjct: 4 EKKWQKRWEEAHIF----EADPDDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFER 59
Query: 1635 MDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ---------- 1684
M G + + G+ G PI E + ++ I+ + A+ E++ +
Sbjct: 60 MKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEY 119
Query: 1685 ----QKMDFMRLGILGEWDNSYKTMD-----FLN-EANELRAFGIIFKKGYVYHGLKPVN 1734
+ +G +W S+KT D F+ + N+L+ G+I K G PV
Sbjct: 120 FSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVK------GEHPVR 173
Query: 1735 WCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPW 1794
+C + + + ++ + Y+ F L G Y V T P
Sbjct: 174 YCPKDGNPVEDHDLLSGEGVTIVEYILIKFE-------------LEDGAFYFVAATLRPE 220
Query: 1795 TIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF---KGNIIGICKGIK 1851
T+ V+P Y + + + + K + + K I G +
Sbjct: 221 TVYGVTNCWVNPTITYVIAEVGGE-------KWITSKEAFENLSYQKLKYKPIEEVPGKQ 273
Query: 1852 LSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPA----------------- 1894
+P+ ++ PI +++ GTG+V S PA
Sbjct: 274 FIGKKVHNPVVGPEV------PILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPE 327
Query: 1895 -YGIEDFLI------------------------FKKQNMKDSDIINPVMDD--------G 1921
GI+ +I ++ KD +++ G
Sbjct: 328 YLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTG 387
Query: 1922 NFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTL-QW 1980
I +P + GM + +A + + + L + + F S + C R T I + QW
Sbjct: 388 VMIYNIPPYKGMKVSEAKEKVKADLIDAGLADVMYEFSESPVIC-RCGTDCIVKVVEDQW 446
Query: 1981 FINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIA 2040
F+ +S +E A + ++ P K+ + I DW R+ G +
Sbjct: 447 FVKYS------DESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLP 500
Query: 2041 FFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNL-DIKEFLGDDAVNYKKSNDTLDVW 2099
+ LIE L+ I+ I +L D Y T +
Sbjct: 501 W-----------DEKWLIE------SLSDSTIYMAYYTIAHYLNKD--YYGNEQMTDEF- 540
Query: 2100 FDSGITHQTVIRGSH---------KKQLI--FPADLYLEGSD---QHRGWFHSSLLTSII 2145
FD + ++ ++ +++ +P D + G D H LT I
Sbjct: 541 FDYIFLGKGDVKNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNH--------LTFYI 592
Query: 2146 LNKSAPY------KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST- 2198
+ A + + ++ +G+V+ +GKKMSKSKGN++ ++ FGA++ RL++A
Sbjct: 593 FHHVAIFPEKFWPRGIVVNGYVM-LEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAA 651
Query: 2199 DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINI 2258
+ +D + V T R+ F T + N E
Sbjct: 652 ETVQDADWKE---SEVEGTILRLERLYEFAEEITKESNLETG-------EETSFIDRWLE 701
Query: 2259 TNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSI 2318
+ + I Y E ++ + + D+ D + ++ +
Sbjct: 702 SRMNAAIKETYEAMENFQTRKAVKY-------ALF-DLQADVDWYRRRGGVNHKDVLARY 753
Query: 2319 WHINQSLLRLISPILSFTSEEAWSIFSDKNF 2349
+ ++L++P +EE W ++ F
Sbjct: 754 LE---TWIKLLAPFAPHFAEEMWEEVGNEGF 781
Score = 92.6 bits (230), Expect = 2e-18
Identities = 153/848 (18%), Positives = 289/848 (34%), Gaps = 185/848 (21%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
+R KF L PY NG +H GH + ++ +F M G + + G+ G PI
Sbjct: 23 DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLA 82
Query: 508 EKLYGKNLSPIEIQNKARALAYEKIEQ--------------QKMDFMRLGILGEWDNSYK 553
E + ++ I+ + A+ E++ + + +G +W S+K
Sbjct: 83 ELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFK 142
Query: 554 TMD-----FLN-EANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS 607
T D F+ + N+L+ G+I K G PV +C + + + ++ +
Sbjct: 143 TTDPYYDRFIEWQMNKLKELGLIVK------GEHPVRYCPKDGNPVEDHDLLSGEGVTIV 196
Query: 608 IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKN 667
Y+ F L G Y V T P T+ V+P Y + +
Sbjct: 197 EYILIKFE-------------LEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGG 243
Query: 668 DPPLLLILAFNLVKSCLKKFGF---KGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPI 724
+ + K + + K I G + +P+ ++ PI
Sbjct: 244 E-------KWITSKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEV------PI 290
Query: 725 YLGDYITVDSGTGIVHSAPA------------------YGIEDFLI-------------- 752
+++ GTG+V S PA GI+ +I
Sbjct: 291 LPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYG 350
Query: 753 ----------FKKQNMKDSDIINPVMDD--------GNFISTLPLFGGMSIWKASKLICS 794
++ KD +++ G I +P + GM + +A + + +
Sbjct: 351 DLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVKA 410
Query: 795 YLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTL-QWFINMDKIPKNEKKSLRESAITAI 853
L + + F S + C R T I + QWF+ +S +E A +
Sbjct: 411 DLIDAGLADVMYEFSESPVIC-RCGTDCIVKVVEDQWFVKYS------DESWKELAHECL 463
Query: 854 NKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAK 913
++ P K+ + I DW R+ G + + LIE
Sbjct: 464 EGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPW-----------DEKWLIE---- 508
Query: 914 KIELNGIEIWQNL-DIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-------- 964
L+ I+ I +L D Y T + FD + ++ ++
Sbjct: 509 --SLSDSTIYMAYYTIAHYLNKD--YYGNEQMTDEF-FDYIFLGKGDVKNTNIPLPAIQK 563
Query: 965 -KKQLI--FPADLYLEGSD---QHRGWFHSSLLTSIILNKSAPY------KALLTHGFVV 1012
+++ +P D + G D H LT I + A + + ++ +G+V+
Sbjct: 564 LRREFEYWYPLDWRISGKDLIPNH--------LTFYIFHHVAIFPEKFWPRGIVVNGYVM 615
Query: 1013 DSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRI 1071
+GKKMSKSKGN++ ++ FGA++ RL++A + +D + V T R+
Sbjct: 616 -LEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKE---SEVEGTILRL 671
Query: 1072 RNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKL 1131
F T + N E + + I Y E +
Sbjct: 672 ERLYEFAEEITKESNLETG-------EETSFIDRWLESRMNAAIKETYEAMENFQTRKAV 724
Query: 1132 QIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAW 1191
+ + + D+ D + ++ + + ++L++P +EE W
Sbjct: 725 KY-------ALF-DLQADVDWYRRRGGVNHKDVLARYLE---TWIKLLAPFAPHFAEEMW 773
Query: 1192 SIFSDKNF 1199
++ F
Sbjct: 774 EEVGNEGF 781
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA. This
domain is found mainly hydrophobic tRNA synthetases. The
domain binds to the anticodon of the tRNA.
Length = 148
Score = 88.2 bits (219), Expect = 6e-20
Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
Query: 1101 DKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHA 1160
D++ + + L KE+ Y Y F+ S L + DL +YL++ KDRLY + +
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYG--EAPDS 58
Query: 1161 RRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYN 1220
RSAQT ++ + ++LLRL++P + F +EE W + E+I + +V
Sbjct: 59 DRSAQTVLYEVLETLLRLLAPFMPFITEELWQ-------KLGKKESIHLAPWPEPDEVEE 111
Query: 1221 SKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIIL 1261
++L ++ ++R +++Q + K+RS I SL E++L
Sbjct: 112 DEELEEEF----ELRQEIVQAIRKLRSELKIKKSLPLEVVL 148
Score = 88.2 bits (219), Expect = 6e-20
Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
Query: 2251 DKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHA 2310
D++ + + L KE+ Y Y F+ S L + DL +YL++ KDRLY + +
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYG--EAPDS 58
Query: 2311 RRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYN 2370
RSAQT ++ + ++LLRL++P + F +EE W + E+I + +V
Sbjct: 59 DRSAQTVLYEVLETLLRLLAPFMPFITEELWQ-------KLGKKESIHLAPWPEPDEVEE 111
Query: 2371 SKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIIL 2411
++L ++ ++R +++Q + K+RS I SL E++L
Sbjct: 112 DEELEEEF----ELRQEIVQAIRKLRSELKIKKSLPLEVVL 148
>gnl|CDD|223162 COG0084, TatD, Mg-dependent DNase [DNA replication, recombination,
and repair].
Length = 256
Score = 90.3 bits (225), Expect = 2e-19
Identities = 31/58 (53%), Positives = 47/58 (81%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
S + AR++++LGFYIS SGIVTFKN++ L++V + L +L+ETD+PYL+P+P+R K
Sbjct: 160 SAEEARKLLDLGFYISISGIVTFKNAEKLREVARELPLDRLLLETDAPYLAPVPYRGK 217
>gnl|CDD|232780 TIGR00010, TIGR00010, hydrolase, TatD family. PSI-BLAST, starting
with a urease alpha subunit, finds a large superfamily
of proteins, including a number of different enzymes
that act as hydrolases at C-N bonds other than peptide
bonds (EC 3.5.-.-), many uncharacterized proteins, and
the members of this family. Several genomes have
multiple paralogs related to this family. However, a set
of 17 proteins can be found, one each from 17 of the
first 20 genomes, such that each member forms a
bidirectional best hit across genomes with all other
members of the set. This core set (and one other
near-perfect member), but not the other paralogs, form
the seed for this model. Additionally, members of the
seed alignment and all trusted hits, but not all
paralogs, have a conserved motif DxHxH near the amino
end. The member from E. coli was recently shown to have
DNase activity [Unknown function, Enzymes of unknown
specificity].
Length = 252
Score = 88.5 bits (220), Expect = 6e-19
Identities = 32/58 (55%), Positives = 49/58 (84%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
++A+++++LGFYIS SGIVTFKN+K L++V+ I L+ +L+ETDSPYL+P+P+R K
Sbjct: 156 DAELAKKLLDLGFYISISGIVTFKNAKSLREVVRKIPLERLLVETDSPYLAPVPYRGK 213
>gnl|CDD|236767 PRK10812, PRK10812, putative DNAse; Provisional.
Length = 265
Score = 86.7 bits (215), Expect = 3e-18
Identities = 30/56 (53%), Positives = 44/56 (78%)
Query: 3 DVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
+ A ++++LGFYISFSGIVTF+N++ L+ + L +L+ETDSPYL+P+PHR K
Sbjct: 162 ETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGK 217
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 91.2 bits (227), Expect = 4e-18
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W K+W+E K++ + + S KF + PY +G +H+GH N + D+I ++ M
Sbjct: 11 EEKWQKRWEEAKVF-EADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRM 69
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGIL 1695
G++ + G+D G+P E N + I+I Y I K LG
Sbjct: 70 QGYNVLHPMGWDAFGLPAE---------NAA-IKIGTDPAKWTYYNIAYMKKQLKSLGFS 119
Query: 1696 GEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE 1749
+W + T D F +++KG Y PVNWC + LA ++
Sbjct: 120 IDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVI 173
Score = 87.7 bits (218), Expect = 5e-17
Identities = 72/356 (20%), Positives = 129/356 (36%), Gaps = 70/356 (19%)
Query: 875 PDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIE--------LNGIEIWQNL 926
DW SRQR+WG PI IH + + P + + + + L E W
Sbjct: 420 RDWLKSRQRYWGEPIPI-IHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEW--- 475
Query: 927 DIKEFLGDDAVNYKKSNDTLDVWFDSG---------ITHQTVIRGSHKKQLIFPADLYLE 977
+ E L D + DT+D + DS I + + +P DLY+
Sbjct: 476 -VIESLPD--STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIG 532
Query: 978 GSDQHRGWFHSSL-LTSIILNKSA-----------PYKALLTHGFVVDSKGKKMSKSKGN 1025
G + H+ L L A P+K L+T G V+ +G+KMSKSKGN
Sbjct: 533 GIE------HAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGN 586
Query: 1026 IIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSD 1084
++ P++ +GA+ +RL++ +DL S + R ++ +
Sbjct: 587 VVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGA---RRFLQRVWNL----VKE 639
Query: 1085 FNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMIVSKLQIYCSEDLGSFY 1143
+ + + D++ + K++ + F+ ++
Sbjct: 640 HLEKLVEELTKEQGKEDRWL---LHRTIKKVTEDFEARQTFNTAIAA------------- 683
Query: 1144 LDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNF 1199
L L + L + + R +RL++P +EE W ++ F
Sbjct: 684 LMELLNALRKYLRRTEGDRKVLREALET---WVRLLAPFAPHIAEELWEELGNEGF 736
Score = 87.7 bits (218), Expect = 5e-17
Identities = 72/356 (20%), Positives = 129/356 (36%), Gaps = 70/356 (19%)
Query: 2025 PDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIE--------LNGIEIWQNL 2076
DW SRQR+WG PI IH + + P + + + + L E W
Sbjct: 420 RDWLKSRQRYWGEPIPI-IHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEW--- 475
Query: 2077 DIKEFLGDDAVNYKKSNDTLDVWFDSG---------ITHQTVIRGSHKKQLIFPADLYLE 2127
+ E L D + DT+D + DS I + + +P DLY+
Sbjct: 476 -VIESLPD--STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIG 532
Query: 2128 GSDQHRGWFHSSL-LTSIILNKSA-----------PYKALLTHGFVVDSKGKKMSKSKGN 2175
G + H+ L L A P+K L+T G V+ +G+KMSKSKGN
Sbjct: 533 GIE------HAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGN 586
Query: 2176 IIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSD 2234
++ P++ +GA+ +RL++ +DL S + R ++ +
Sbjct: 587 VVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGA---RRFLQRVWNL----VKE 639
Query: 2235 FNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMIVSKLQIYCSEDLGSFY 2293
+ + + D++ + K++ + F+ ++
Sbjct: 640 HLEKLVEELTKEQGKEDRWL---LHRTIKKVTEDFEARQTFNTAIAA------------- 683
Query: 2294 LDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNF 2349
L L + L + + R +RL++P +EE W ++ F
Sbjct: 684 LMELLNALRKYLRRTEGDRKVLREALET---WVRLLAPFAPHIAEELWEELGNEGF 736
Score = 78.9 bits (195), Expect = 3e-14
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 10/154 (6%)
Query: 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEI 505
S KF + PY +G +H+GH N + D+I ++ M G++ + G+D G+P E
Sbjct: 30 SDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAE- 88
Query: 506 QIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELR 565
N + I+I Y I K LG +W + T D
Sbjct: 89 --------NAA-IKIGTDPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQW 139
Query: 566 AFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE 599
F +++KG Y PVNWC + LA ++
Sbjct: 140 QFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVI 173
>gnl|CDD|216250 pfam01026, TatD_DNase, TatD related DNase. This family of proteins
are related to a large superfamily of metalloenzymes.
TatD, a member of this family has been shown
experimentally to be a DNase enzyme.
Length = 255
Score = 84.3 bits (209), Expect = 2e-17
Identities = 35/58 (60%), Positives = 49/58 (84%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
SL+ A+EI++LGFYIS SGIVTFKN+K L++V+ I L +L+ETD+PYL+P+P+R K
Sbjct: 160 SLETAKEILDLGFYISISGIVTFKNAKKLREVVAEIPLDRLLVETDAPYLAPVPYRGK 217
>gnl|CDD|238635 cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a
cytoplasmic protein, shown to have magnesium dependent
DNase activity.
Length = 251
Score = 83.8 bits (208), Expect = 3e-17
Identities = 33/58 (56%), Positives = 47/58 (81%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
S + A+E+++LGFYIS SGIVTFKN+ L++V+ I L+ +L+ETDSPYL+P+P R K
Sbjct: 156 SAEEAKELLDLGFYISISGIVTFKNANELREVVKEIPLERLLLETDSPYLAPVPFRGK 213
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 84.3 bits (209), Expect = 4e-16
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEI 505
K ++ PY NG H+GH + D+ ++ + G++ ++ G D HG IE+
Sbjct: 1 MKMMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIEL 60
Query: 506 QIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELR 565
+ EK ++P E+ +K E+ K F L I +DN +T ++
Sbjct: 61 KAEKE---GITPQELVDKNH-------EEFKELFKALNI--SFDNFIRTTSPEHKELVQE 108
Query: 566 AFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE 599
F +++ G +Y +C C+ L + +E
Sbjct: 109 FFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE 142
Score = 84.3 bits (209), Expect = 4e-16
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 1596 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEI 1655
K ++ PY NG H+GH + D+ ++ + G++ ++ G D HG IE+
Sbjct: 1 MKMMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIEL 60
Query: 1656 QIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELR 1715
+ EK ++P E+ +K E+ K F L I +DN +T ++
Sbjct: 61 KAEKE---GITPQELVDKNH-------EEFKELFKALNI--SFDNFIRTTSPEHKELVQE 108
Query: 1716 AFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE 1749
F +++ G +Y +C C+ L + +E
Sbjct: 109 FFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE 142
Score = 56.1 bits (136), Expect = 2e-07
Identities = 51/258 (19%), Positives = 95/258 (36%), Gaps = 32/258 (12%)
Query: 1003 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEIL 1061
+ HGF+ +G+KMSKS+GN++ P +L +G + LR ++A D S E
Sbjct: 319 TRIFAHGFLTL-EGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDF 377
Query: 1062 NRVVETYRRIRNTL---------RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQ 1112
R+ L R L F+ + D +E D+ +
Sbjct: 378 ------VERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPD-LEEDEELLALAREAL 430
Query: 1113 KEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHIN 1172
+ + YEF + ++ S + Y+D + K R T ++
Sbjct: 431 EAVAEAMEKYEFRKALEEIMALASR--ANKYIDEQAP--WKLAKEDKRER-LATVLYLAL 485
Query: 1173 QS---LLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYM 1229
+ L L+ P + T+E+ W +E FT L + P + K +
Sbjct: 486 ELVRVLAILLYPFMPETAEKIWDQLG-----LEEDARNFTWLGARQPLLPGHKLGPPEP- 539
Query: 1230 ILKKIRSKVMQKLEKIRS 1247
+ +I + +++L +
Sbjct: 540 LFPRIEEEAIEELIEALK 557
Score = 56.1 bits (136), Expect = 2e-07
Identities = 51/258 (19%), Positives = 95/258 (36%), Gaps = 32/258 (12%)
Query: 2153 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEIL 2211
+ HGF+ +G+KMSKS+GN++ P +L +G + LR ++A D S E
Sbjct: 319 TRIFAHGFLTL-EGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDF 377
Query: 2212 NRVVETYRRIRNTL---------RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQ 2262
R+ L R L F+ + D +E D+ +
Sbjct: 378 ------VERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPD-LEEDEELLALAREAL 430
Query: 2263 KEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHIN 2322
+ + YEF + ++ S + Y+D + K R T ++
Sbjct: 431 EAVAEAMEKYEFRKALEEIMALASR--ANKYIDEQAP--WKLAKEDKRER-LATVLYLAL 485
Query: 2323 QS---LLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYM 2379
+ L L+ P + T+E+ W +E FT L + P + K +
Sbjct: 486 ELVRVLAILLYPFMPETAEKIWDQLG-----LEEDARNFTWLGARQPLLPGHKLGPPEP- 539
Query: 2380 ILKKIRSKVMQKLEKIRS 2397
+ +I + +++L +
Sbjct: 540 LFPRIEEEAIEELIEALK 557
Score = 36.1 bits (84), Expect = 0.27
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 10/83 (12%)
Query: 813 MHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA--ITAINKIKFFPSWGKDRLKSM 870
C R +F + K + + I N+ ++ K+ LK
Sbjct: 173 PVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLK-- 230
Query: 871 ILNRPDWTISRQR-HWGVPIAFF 892
D +I+R WG+P+
Sbjct: 231 -----DLSITRTDLDWGIPVPGD 248
Score = 36.1 bits (84), Expect = 0.27
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 10/83 (12%)
Query: 1963 MHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA--ITAINKIKFFPSWGKDRLKSM 2020
C R +F + K + + I N+ ++ K+ LK
Sbjct: 173 PVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLK-- 230
Query: 2021 ILNRPDWTISRQR-HWGVPIAFF 2042
D +I+R WG+P+
Sbjct: 231 -----DLSITRTDLDWGIPVPGD 248
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 80.9 bits (200), Expect = 4e-15
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 12/146 (8%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
PYANG H+GHA IL D+ ++ + G++ +V G D HG IE++ E+ L+P
Sbjct: 8 PYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE---GLTPK 64
Query: 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578
E+ +K +E+ + D+ L I +D +T D ++ + F + + GY+Y
Sbjct: 65 ELVDK----YHEEFKD---DWKWLNI--SFDRFIRTTDEEHKEIVQKIFQKLKENGYIYE 115
Query: 579 GLKPVNWCFDCKSALAEAEIEYKKKY 604
+C +C+ L + +E
Sbjct: 116 KEIKQLYCPECEMFLPDRYVEGTCPK 141
Score = 80.9 bits (200), Expect = 4e-15
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 12/146 (8%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 1668
PYANG H+GHA IL D+ ++ + G++ +V G D HG IE++ E+ L+P
Sbjct: 8 PYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE---GLTPK 64
Query: 1669 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728
E+ +K +E+ + D+ L I +D +T D ++ + F + + GY+Y
Sbjct: 65 ELVDK----YHEEFKD---DWKWLNI--SFDRFIRTTDEEHKEIVQKIFQKLKENGYIYE 115
Query: 1729 GLKPVNWCFDCKSALAEAEIEYKKKY 1754
+C +C+ L + +E
Sbjct: 116 KEIKQLYCPECEMFLPDRYVEGTCPK 141
Score = 59.7 bits (145), Expect = 1e-08
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 1003 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLW-VASTDYSKDLSISNEIL 1061
+ +HG++ +G KMSKS GN++ P L FGA+ILR + + KD S E
Sbjct: 313 TQVFSHGYLTV-EGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDF 371
Query: 1062 NRVVETYRRIRNTLRFLLANT-----SDFNPNINIIKISDMVEIDKYAIINITNLQKEIL 1116
V + N L LL T FN + I+D E DK + I ++I
Sbjct: 372 VERVNA--DLANKLGNLLNRTLGFIKKYFNGVLPSEDITD--EEDKKLLKLINEALEQID 427
Query: 1117 SHYRMYEFH-MIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSL 1175
+EF + +++ D G+ Y+D K + K S + + + L
Sbjct: 428 EAIESFEFRKALREIMKLA---DRGNKYIDENKP--WELFKQSPRLKELLAVCSMLIRVL 482
Query: 1176 LRLISPILSFTSEEAWSIF 1194
L+ PI+ SE+
Sbjct: 483 SILLYPIMPKLSEKILKFL 501
Score = 59.7 bits (145), Expect = 1e-08
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 2153 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLW-VASTDYSKDLSISNEIL 2211
+ +HG++ +G KMSKS GN++ P L FGA+ILR + + KD S E
Sbjct: 313 TQVFSHGYLTV-EGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDF 371
Query: 2212 NRVVETYRRIRNTLRFLLANT-----SDFNPNINIIKISDMVEIDKYAIINITNLQKEIL 2266
V + N L LL T FN + I+D E DK + I ++I
Sbjct: 372 VERVNA--DLANKLGNLLNRTLGFIKKYFNGVLPSEDITD--EEDKKLLKLINEALEQID 427
Query: 2267 SHYRMYEFH-MIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSL 2325
+EF + +++ D G+ Y+D K + K S + + + L
Sbjct: 428 EAIESFEFRKALREIMKLA---DRGNKYIDENKP--WELFKQSPRLKELLAVCSMLIRVL 482
Query: 2326 LRLISPILSFTSEEAWSIF 2344
L+ PI+ SE+
Sbjct: 483 SILLYPIMPKLSEKILKFL 501
>gnl|CDD|223195 COG0117, RibD, Pyrimidine deaminase [Coenzyme metabolism].
Length = 146
Score = 73.1 bits (180), Expect = 1e-14
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 24/134 (17%)
Query: 67 PVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPC 126
VG V+VK+ ++ GY+++ HAE+ ALRMA + + YVTLEPC
Sbjct: 29 SVGCVIVKDGEIVGEGYHEKAGG----PHAEVCALRMAGEAA------RGATAYVTLEPC 78
Query: 127 AM------CAGAIIHVRLGEIIYGT--PSFKTGACGSIINLFQEKKLNHHTILTGGVMQK 178
+ CA A+I + ++ P+ A G + L + G++++
Sbjct: 79 SHYGRTPPCADALIKAGVARVVVAMLDPNPLV-AGGGLARL-----RAAGIEVEVGILEE 132
Query: 179 QCEKLLKSFFIKRR 192
+ EKL + F + R
Sbjct: 133 EAEKLNEGFLKRMR 146
Score = 32.2 bits (74), Expect = 1.5
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
Query: 1339 EPCAM------CAGAIIHVRLGEIIYGT--PSFKTGACGSIINLFQEKKLNHHTILTGGV 1390
EPC+ CA A+I + ++ P+ A G + L + G+
Sbjct: 76 EPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLV-AGGGLARL-----RAAGIEVEVGI 129
Query: 1391 MQKQCEKLLKSFFIKRR 1407
++++ EKL + F + R
Sbjct: 130 LEEEAEKLNEGFLKRMR 146
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 76.1 bits (188), Expect = 6e-14
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 12/141 (8%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
PY NG HIGH I D+ ++ + G+D +V G D HG IE+ EK ++P
Sbjct: 8 PYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKE---GVTPQ 64
Query: 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578
E+ ++ E+ K F + I +D+ +T ++ F +++KG +Y
Sbjct: 65 ELVDRYH-------EEFKELFKKFNI--SFDDFIRTTSERHKELVQEFFLKLYEKGDIYE 115
Query: 579 GLKPVNWCFDCKSALAEAEIE 599
G +C + L + +E
Sbjct: 116 GEYEGWYCVSDERFLPDRYVE 136
Score = 76.1 bits (188), Expect = 6e-14
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 12/141 (8%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 1668
PY NG HIGH I D+ ++ + G+D +V G D HG IE+ EK ++P
Sbjct: 8 PYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKE---GVTPQ 64
Query: 1669 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728
E+ ++ E+ K F + I +D+ +T ++ F +++KG +Y
Sbjct: 65 ELVDRYH-------EEFKELFKKFNI--SFDDFIRTTSERHKELVQEFFLKLYEKGDIYE 115
Query: 1729 GLKPVNWCFDCKSALAEAEIE 1749
G +C + L + +E
Sbjct: 116 GEYEGWYCVSDERFLPDRYVE 136
Score = 47.2 bits (113), Expect = 7e-05
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1003 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEIL 1061
+ HG++ +G KMSKS+GN++ P +L + +G + LR ++A KD S E
Sbjct: 310 TQVFAHGWLTV-EGGKMSKSRGNVVDPDELLDRYGVDALRYYLAREAPEGKDGDFSWEDF 368
Query: 1062 -NRV 1064
RV
Sbjct: 369 VERV 372
Score = 47.2 bits (113), Expect = 7e-05
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 2153 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEIL 2211
+ HG++ +G KMSKS+GN++ P +L + +G + LR ++A KD S E
Sbjct: 310 TQVFAHGWLTV-EGGKMSKSRGNVVDPDELLDRYGVDALRYYLAREAPEGKDGDFSWEDF 368
Query: 2212 -NRV 2214
RV
Sbjct: 369 VERV 372
Score = 34.5 bits (80), Expect = 0.68
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 806 EMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFP-SWGK 864
E E + + +F + K + ++E+ + + SW K
Sbjct: 160 EPTELINPRSAISGSTPELKEEEHYFFRLSKFQDKLLEWIKENPDEPPSNVNEVVLSWLK 219
Query: 865 DRLKSMILNRPDWTISRQRHWGVPIAFFIHK 895
+ LK D +I+R WG+P+ K
Sbjct: 220 EGLK-------DLSITRDLDWGIPVPGDPGK 243
Score = 34.5 bits (80), Expect = 0.68
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 1956 EMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFP-SWGK 2014
E E + + +F + K + ++E+ + + SW K
Sbjct: 160 EPTELINPRSAISGSTPELKEEEHYFFRLSKFQDKLLEWIKENPDEPPSNVNEVVLSWLK 219
Query: 2015 DRLKSMILNRPDWTISRQRHWGVPIAFFIHK 2045
+ LK D +I+R WG+P+ K
Sbjct: 220 EGLK-------DLSITRDLDWGIPVPGDPGK 243
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 74.9 bits (185), Expect = 6e-14
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
PY NG H+GH +L D+ ++ + G+D +V G D HG IE + E+ ++P
Sbjct: 9 PYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE---GVTPQ 65
Query: 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 577
E+ +K E K F L I +D +T ++ F +++ GY+Y
Sbjct: 66 ELCDKYH-------EIFKDLFKWLNI--SFDYFIRTTSPRHKEIVQEFFKKLYENGYIY 115
Score = 74.9 bits (185), Expect = 6e-14
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 1668
PY NG H+GH +L D+ ++ + G+D +V G D HG IE + E+ ++P
Sbjct: 9 PYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE---GVTPQ 65
Query: 1669 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 1727
E+ +K E K F L I +D +T ++ F +++ GY+Y
Sbjct: 66 ELCDKYH-------EIFKDLFKWLNI--SFDYFIRTTSPRHKEIVQEFFKKLYENGYIY 115
Score = 47.9 bits (115), Expect = 4e-05
Identities = 52/239 (21%), Positives = 85/239 (35%), Gaps = 86/239 (35%)
Query: 823 IYRTTLQWFINMDK--------IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNR 874
+R +F + K + KN E+A N++ SW K+ LK
Sbjct: 133 EWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENAR---NEVL---SWLKEGLK------ 180
Query: 875 PDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLG 933
D +I+R WG+P+
Sbjct: 181 -DLSITRDLFDWGIPVPLD----------------------------------------- 198
Query: 934 DDAVNYKKSNDTLDVWFDSGITHQTVI-------RGSHKKQLIFPADLYLEGSDQHRGWF 986
V Y VWFD+ I + + S + +P ++ G D R F
Sbjct: 199 PGKVIY--------VWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIR--F 248
Query: 987 HSSLLTSIILNKSAPYK---ALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 1042
H+ +++L A ++ HG++ +GKKMSKS+GN++ P L +GA+ LR
Sbjct: 249 HAIYWPAMLL--GAGLPLPTRIVAHGYLT-VEGKKMSKSRGNVVDPDDLLERYGADALR 304
Score = 47.9 bits (115), Expect = 4e-05
Identities = 52/239 (21%), Positives = 85/239 (35%), Gaps = 86/239 (35%)
Query: 1973 IYRTTLQWFINMDK--------IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNR 2024
+R +F + K + KN E+A N++ SW K+ LK
Sbjct: 133 EWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENAR---NEVL---SWLKEGLK------ 180
Query: 2025 PDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLG 2083
D +I+R WG+P+
Sbjct: 181 -DLSITRDLFDWGIPVPLD----------------------------------------- 198
Query: 2084 DDAVNYKKSNDTLDVWFDSGITHQTVI-------RGSHKKQLIFPADLYLEGSDQHRGWF 2136
V Y VWFD+ I + + S + +P ++ G D R F
Sbjct: 199 PGKVIY--------VWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIR--F 248
Query: 2137 HSSLLTSIILNKSAPYK---ALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 2192
H+ +++L A ++ HG++ +GKKMSKS+GN++ P L +GA+ LR
Sbjct: 249 HAIYWPAMLL--GAGLPLPTRIVAHGYLT-VEGKKMSKSRGNVVDPDDLLERYGADALR 304
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 73.1 bits (180), Expect = 3e-13
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 12/133 (9%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
PY +G +H+GH + DII ++ M G++ + G+D G+P E N + I
Sbjct: 9 PYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAE---------NAA-I 58
Query: 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD-FLNEANELRAFGIIFKKGYVY 577
+I I++ K R+G +W + T D + + F +++KG Y
Sbjct: 59 KIGRDPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQ-WLFLKLYEKGLAY 117
Query: 578 HGLKPVNWCFDCK 590
PVNWC
Sbjct: 118 KKEAPVNWCKLLD 130
Score = 73.1 bits (180), Expect = 3e-13
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 12/133 (9%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 1668
PY +G +H+GH + DII ++ M G++ + G+D G+P E N + I
Sbjct: 9 PYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAE---------NAA-I 58
Query: 1669 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD-FLNEANELRAFGIIFKKGYVY 1727
+I I++ K R+G +W + T D + + F +++KG Y
Sbjct: 59 KIGRDPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQ-WLFLKLYEKGLAY 117
Query: 1728 HGLKPVNWCFDCK 1740
PVNWC
Sbjct: 118 KKEAPVNWCKLLD 130
Score = 65.3 bits (160), Expect = 1e-10
Identities = 54/273 (19%), Positives = 94/273 (34%), Gaps = 91/273 (33%)
Query: 805 IEMFEHSYMHCWRHKTPIIYRTTL-QWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG 863
++++E ++ + P+ + L QWF+ K + +E + + K+ +P
Sbjct: 108 LKLYEKGL--AYKKEAPVNWCKLLDQWFL------KYSETEWKEKLLKDLEKLDGWP--- 156
Query: 864 KDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW 923
+ +++M N SRQR+WG PI +
Sbjct: 157 -EEVRAMQENWIG--CSRQRYWGTPIPW-------------------------------- 181
Query: 924 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGI----------THQTVIRGSHKKQLIF--- 970
DT++ DS Q + F
Sbjct: 182 -------------------TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYW 222
Query: 971 -PADLYLEGSDQ-------HRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKS 1022
P D+Y+ G + R F+ L L P K L+ G V+ +G+KMSKS
Sbjct: 223 YPVDIYIGGKEHAPNHLLYSR--FNHKALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKS 279
Query: 1023 KGNIIKPQKLCNLFGAEILRLWVAST-DYSKDL 1054
KGN++ P + +GA+ RL++ D
Sbjct: 280 KGNVVTPDEAIKKYGADAARLYILFAAPPDADF 312
Score = 65.3 bits (160), Expect = 1e-10
Identities = 54/273 (19%), Positives = 94/273 (34%), Gaps = 91/273 (33%)
Query: 1955 IEMFEHSYMHCWRHKTPIIYRTTL-QWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG 2013
++++E ++ + P+ + L QWF+ K + +E + + K+ +P
Sbjct: 108 LKLYEKGL--AYKKEAPVNWCKLLDQWFL------KYSETEWKEKLLKDLEKLDGWP--- 156
Query: 2014 KDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW 2073
+ +++M N SRQR+WG PI +
Sbjct: 157 -EEVRAMQENWIG--CSRQRYWGTPIPW-------------------------------- 181
Query: 2074 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGI----------THQTVIRGSHKKQLIF--- 2120
DT++ DS Q + F
Sbjct: 182 -------------------TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYW 222
Query: 2121 -PADLYLEGSDQ-------HRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKS 2172
P D+Y+ G + R F+ L L P K L+ G V+ +G+KMSKS
Sbjct: 223 YPVDIYIGGKEHAPNHLLYSR--FNHKALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKS 279
Query: 2173 KGNIIKPQKLCNLFGAEILRLWVAST-DYSKDL 2204
KGN++ P + +GA+ RL++ D
Sbjct: 280 KGNVVTPDEAIKKYGADAARLYILFAAPPDADF 312
>gnl|CDD|238611 cd01284, Riboflavin_deaminase-reductase, Riboflavin-specific
deaminase. Riboflavin biosynthesis protein RibD
(Diaminohydroxyphosphoribosylaminopyrimidine deaminase)
catalyzes the deamination of
2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone
5'-phosphate, which is an intermediate step in the
biosynthesis of riboflavin.The ribG gene of Bacillus
subtilis and the ribD gene of E. coli are bifunctional
and contain this deaminase domain and a reductase domain
which catalyzes the subsequent reduction of the ribosyl
side chain.
Length = 115
Score = 63.8 bits (156), Expect = 1e-11
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 67 PVGAVLVKNN-LVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEP 125
PVG V+V ++ ++ GY R HAE+ AL A + + ++ +YVTLEP
Sbjct: 20 PVGCVIVDDDGEIVGEGY----HRKAGGPHAEVNALASAGE-----KLARGATLYVTLEP 70
Query: 126 CAM------CAGAIIHVRLGEIIYGT 145
C+ C AII + ++ G
Sbjct: 71 CSHHGKTPPCVDAIIEAGIKRVVVGV 96
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 68.7 bits (169), Expect = 2e-11
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 459 PYANGDIHIGHAVNKILK-DIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSP 517
PYANG +H+GH L D+ ++ + G + +V G D HG PIE+ +K ++P
Sbjct: 12 PYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKE---GVTP 68
Query: 518 IEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 577
E+ +K E+ K DF +LGI +D +T + F +++ GY+Y
Sbjct: 69 QELADKYH-------EEHKEDFKKLGI--SYDLFTRTTSPNHHEVVQEFFLKLYENGYIY 119
Score = 68.7 bits (169), Expect = 2e-11
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 1609 PYANGDIHIGHAVNKILK-DIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSP 1667
PYANG +H+GH L D+ ++ + G + +V G D HG PIE+ +K ++P
Sbjct: 12 PYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKE---GVTP 68
Query: 1668 IEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 1727
E+ +K E+ K DF +LGI +D +T + F +++ GY+Y
Sbjct: 69 QELADKYH-------EEHKEDFKKLGI--SYDLFTRTTSPNHHEVVQEFFLKLYENGYIY 119
Score = 43.3 bits (103), Expect = 0.002
Identities = 45/237 (18%), Positives = 78/237 (32%), Gaps = 60/237 (25%)
Query: 819 KTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWT 878
TP R T +F+++ + + + S N + F +W K+ LK
Sbjct: 179 STPEF-RETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLK-------PRA 230
Query: 879 ISRQRHWGVPIAFFIHKKSGKLHPKTL-----ELIELIAKKIELNGIEIWQNLDIKEFLG 933
I+R WG+P+ + + K +I I+ E KEF
Sbjct: 231 ITRDLDWGIPVPWPGFEG------KVFYVWFDAVIGYISASKEW-AERTGDPEAWKEF-- 281
Query: 934 DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTS 993
W D Y G D FHS + +
Sbjct: 282 ---------------WLDPET-----------------KSYYFIGKDNIP--FHSIIWPA 307
Query: 994 IILNKSAPYK---ALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 1047
++L P K +++ ++ +G K SKS+G I + + LR ++A+
Sbjct: 308 MLLGSGEPLKLPDEIVSSEYL-TLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAA 363
Score = 43.3 bits (103), Expect = 0.002
Identities = 45/237 (18%), Positives = 78/237 (32%), Gaps = 60/237 (25%)
Query: 1969 KTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWT 2028
TP R T +F+++ + + + S N + F +W K+ LK
Sbjct: 179 STPEF-RETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLK-------PRA 230
Query: 2029 ISRQRHWGVPIAFFIHKKSGKLHPKTL-----ELIELIAKKIELNGIEIWQNLDIKEFLG 2083
I+R WG+P+ + + K +I I+ E KEF
Sbjct: 231 ITRDLDWGIPVPWPGFEG------KVFYVWFDAVIGYISASKEW-AERTGDPEAWKEF-- 281
Query: 2084 DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTS 2143
W D Y G D FHS + +
Sbjct: 282 ---------------WLDPET-----------------KSYYFIGKDNIP--FHSIIWPA 307
Query: 2144 IILNKSAPYK---ALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197
++L P K +++ ++ +G K SKS+G I + + LR ++A+
Sbjct: 308 MLLGSGEPLKLPDEIVSSEYL-TLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAA 363
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 69.0 bits (170), Expect = 2e-11
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 18/122 (14%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
PYANG IH+GH V I DI V++ M G + +V D HG PI ++ EK ++P
Sbjct: 11 PYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE---GITPE 67
Query: 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRA---FGIIFKKGY 575
E+ + + K DF GI +DN T E N A + + + GY
Sbjct: 68 ELIARYH-------AEHKRDFAGFGI--SFDNYGSTHS---EENRELAQEIYLKLKENGY 115
Query: 576 VY 577
+Y
Sbjct: 116 IY 117
Score = 69.0 bits (170), Expect = 2e-11
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 18/122 (14%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 1668
PYANG IH+GH V I DI V++ M G + +V D HG PI ++ EK ++P
Sbjct: 11 PYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE---GITPE 67
Query: 1669 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRA---FGIIFKKGY 1725
E+ + + K DF GI +DN T E N A + + + GY
Sbjct: 68 ELIARYH-------AEHKRDFAGFGI--SFDNYGSTHS---EENRELAQEIYLKLKENGY 115
Query: 1726 VY 1727
+Y
Sbjct: 116 IY 117
Score = 36.3 bits (85), Expect = 0.26
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 1008 HGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 1042
HGF+ V+ G KMSKS+G I + + + LR
Sbjct: 320 HGFLTVE--GAKMSKSRGTFIWARTYLDHLDPDYLR 353
Score = 36.3 bits (85), Expect = 0.26
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 2158 HGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 2192
HGF+ V+ G KMSKS+G I + + + LR
Sbjct: 320 HGFLTVE--GAKMSKSRGTFIWARTYLDHLDPDYLR 353
>gnl|CDD|238613 cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase
domain. Deoxycytidylate deaminase catalyzes the
deamination of dCMP to dUMP, providing the nucleotide
substrate for thymidylate synthase. The enzyme binds
Zn++, which is required for catalytic activity. The
activity of the enzyme is allosterically regulated by
the ratio of dCTP to dTTP not only in eukaryotic cells
but also in T-even phage-infected Escherichia coli, with
dCTP acting as an activator and dTTP as an inhibitor.
Length = 131
Score = 61.1 bits (149), Expect = 1e-10
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 24/100 (24%)
Query: 68 VGAVLVKNNLVISYGYNQ------------QITRNDP---------TAHAEIIALRMASK 106
VGAV+VK+ +IS GYN + P T HAE A+ A++
Sbjct: 22 VGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQAAR 81
Query: 107 LLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTP 146
+ + +YVTL PC CA II + +++Y P
Sbjct: 82 HGVS---LEGATLYVTLFPCIECAKLIIQAGIKKVVYAEP 118
Score = 30.3 bits (69), Expect = 5.3
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 1338 FEPCAMCAGAIIHVRLGEIIYGTP 1361
PC CA II + +++Y P
Sbjct: 95 LFPCIECAKLIIQAGIKKVVYAEP 118
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 64.1 bits (156), Expect = 8e-10
Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 31/184 (16%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANG-DIHIGHAVNKILKDIIVKFYN 1634
EP W + W+E + + ++PKF + D PY +G +H+GH DI+ ++
Sbjct: 86 EPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKR 145
Query: 1635 MDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGI 1694
M G++ + G+D G+P E Y IE + + I + + LG
Sbjct: 146 MQGYNVLHPMGWDAFGLPAE-----QYA-----IETGTHPKITTLKNIARFRSQLKSLGF 195
Query: 1695 LGEWDNSYKTMD----------FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA 1744
+WD T + FL + K+G Y PVNWC + LA
Sbjct: 196 SYDWDREISTTEPEYYKWTQWIFLQ----------LLKRGLAYQAEVPVNWCPALGTVLA 245
Query: 1745 EAEI 1748
E+
Sbjct: 246 NEEV 249
Score = 52.9 bits (127), Expect = 3e-06
Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 31/161 (19%)
Query: 449 RPKFILHDGPPYANG-DIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
+PKF + D PY +G +H+GH DI+ ++ M G++ + G+D G+P E
Sbjct: 109 KPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAE--- 165
Query: 508 EKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD----------F 557
Y IE + + I + + LG +WD T + F
Sbjct: 166 --QYA-----IETGTHPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIF 218
Query: 558 LNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI 598
L + K+G Y PVNWC + LA E+
Sbjct: 219 LQ----------LLKRGLAYQAEVPVNWCPALGTVLANEEV 249
Score = 39.0 bits (91), Expect = 0.043
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1012 VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLW 1044
+ ++ KMSKS+GN++ P + + +GA+ LRL+
Sbjct: 717 LIARAHKMSKSRGNVVNPDDVVSEYGADSLRLY 749
Score = 39.0 bits (91), Expect = 0.043
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 2162 VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLW 2194
+ ++ KMSKS+GN++ P + + +GA+ LRL+
Sbjct: 717 LIARAHKMSKSRGNVVNPDDVVSEYGADSLRLY 749
Score = 33.3 bits (76), Expect = 2.2
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 709 HPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768
+P + I PI++ DY+ GTG + + PA+ DF +K ++ ++ P
Sbjct: 395 NPATGEAI------PIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKP-- 446
Query: 769 DDGNFIS 775
DGN
Sbjct: 447 ADGNEDD 453
Score = 33.3 bits (76), Expect = 2.2
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 1859 HPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 1918
+P + I PI++ DY+ GTG + + PA+ DF +K ++ ++ P
Sbjct: 395 NPATGEAI------PIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKP-- 446
Query: 1919 DDGNFIS 1925
DGN
Sbjct: 447 ADGNEDD 453
Score = 31.7 bits (72), Expect = 6.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 876 DWTISRQRHWGVPIAFFIHKKSGKLHP 902
DW +RQR+WG PI + SG+ P
Sbjct: 506 DWLFARQRYWGEPIPVVFLEDSGEPVP 532
Score = 31.7 bits (72), Expect = 6.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 2026 DWTISRQRHWGVPIAFFIHKKSGKLHP 2052
DW +RQR+WG PI + SG+ P
Sbjct: 506 DWLFARQRYWGEPIPVVFLEDSGEPVP 532
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 63.4 bits (155), Expect = 9e-10
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1008 HGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 1066
+GF+ +D G+KMSKS GN I + L + E+LRL++ S+ Y L S E+L +
Sbjct: 259 NGFLNID--GEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKK 316
Query: 1067 TYRRIRNTLRFLLANTSDFNPN 1088
R+ N LR L D
Sbjct: 317 ALERLYNALRRLRDLAGDAELA 338
Score = 63.4 bits (155), Expect = 9e-10
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 2158 HGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 2216
+GF+ +D G+KMSKS GN I + L + E+LRL++ S+ Y L S E+L +
Sbjct: 259 NGFLNID--GEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKK 316
Query: 2217 TYRRIRNTLRFLLANTSDFNPN 2238
R+ N LR L D
Sbjct: 317 ALERLYNALRRLRDLAGDAELA 338
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 63.7 bits (156), Expect = 1e-09
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 36/203 (17%)
Query: 1003 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEIL 1061
+ ++ +GFV+ +GKKMSKSKGN+I +K +GA+++RL++ S+ + +D + +
Sbjct: 563 RGIVVNGFVL-LEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEV 621
Query: 1062 NRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR- 1120
V R + L+ + IDK+ +++ N I+
Sbjct: 622 ESVRRQLERFYELAKELIEIGGEEELRF----------IDKW-LLSRLN---RIIKETTE 667
Query: 1121 -MYEFHMIVSKLQIYCSEDLGSFYLDILKD-RLYTTKKNSHARRSAQT--SIWHINQSLL 1176
M F +Q +FY ++L D R Y + + + IW +
Sbjct: 668 AMESFQ-TRDAVQE-------AFY-ELLNDLRWYLRRVGEANNKVLREVLEIW------I 712
Query: 1177 RLISPILSFTSEEAWSIFSDKNF 1199
RL++P +EE W + F
Sbjct: 713 RLLAPFTPHLAEELWHKLGGEGF 735
Score = 63.7 bits (156), Expect = 1e-09
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 36/203 (17%)
Query: 2153 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEIL 2211
+ ++ +GFV+ +GKKMSKSKGN+I +K +GA+++RL++ S+ + +D + +
Sbjct: 563 RGIVVNGFVL-LEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEV 621
Query: 2212 NRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR- 2270
V R + L+ + IDK+ +++ N I+
Sbjct: 622 ESVRRQLERFYELAKELIEIGGEEELRF----------IDKW-LLSRLN---RIIKETTE 667
Query: 2271 -MYEFHMIVSKLQIYCSEDLGSFYLDILKD-RLYTTKKNSHARRSAQT--SIWHINQSLL 2326
M F +Q +FY ++L D R Y + + + IW +
Sbjct: 668 AMESFQ-TRDAVQE-------AFY-ELLNDLRWYLRRVGEANNKVLREVLEIW------I 712
Query: 2327 RLISPILSFTSEEAWSIFSDKNF 2349
RL++P +EE W + F
Sbjct: 713 RLLAPFTPHLAEELWHKLGGEGF 735
Score = 60.3 bits (147), Expect = 1e-08
Identities = 96/504 (19%), Positives = 186/504 (36%), Gaps = 127/504 (25%)
Query: 465 IHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPI----------EIQIEKLYGKN 514
+H+GH + D+I ++ M G++ + + G PI + + +LY K+
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELY-KS 59
Query: 515 LS--PIEIQNK---ARALA-YEKIEQQKMDFMRLGILGEWDNSYKTMD-----FLN-EAN 562
L P E K + Y E+ K D R+G +W + T D F+ +
Sbjct: 60 LYGIPEEELEKFKDPEYIVEYFS-EEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFR 118
Query: 563 ELRAFGIIFKKGYVYHGLKPVNWCFDCKSAL--------AEAEIEYKKKYDFSIYVGFSF 614
+L+ +KG + G PV +C + + + E EI ++++
Sbjct: 119 KLK------EKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIV-----EYTL------ 161
Query: 615 SEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLI 674
+K S + T P TI L V+P+ Y + + I
Sbjct: 162 -----------IKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGE---KWI 207
Query: 675 LAFNLVKSCLKKFGFKGN---IIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYIT 731
++ K +K F+ II KG +L +P++ ++ PI D++
Sbjct: 208 VS----KEAAEKLSFQDRDVEIIEEIKGSELIGKKVKNPVTGKEV------PILPADFVD 257
Query: 732 VDSGTGIVHSAPAYGIEDFLIFK--KQNMKDSDIINPV---------------------- 767
D+GTG+V S PA+ D++ + K+N + D+I P+
Sbjct: 258 PDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGI 317
Query: 768 -------MDD------------GNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMF 808
+++ G + G + +A + I L + + F
Sbjct: 318 KSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEF 377
Query: 809 EHSYMHCWRHKTPIIYRTTL-QWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRL 867
+ ++C R T + + QWFI+ + + +E A A++ ++ P +
Sbjct: 378 SNRPVYC-RCGTECVVKVVKDQWFIDYS----DPE--WKELAHKALDNMEIIPEEYRKEF 430
Query: 868 KSMILNRPDWTISRQRHWGVPIAF 891
++ I D +R+R G + +
Sbjct: 431 ENTIDWLKDRACARRRGLGTRLPW 454
Score = 60.3 bits (147), Expect = 1e-08
Identities = 96/504 (19%), Positives = 186/504 (36%), Gaps = 127/504 (25%)
Query: 1615 IHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPI----------EIQIEKLYGKN 1664
+H+GH + D+I ++ M G++ + + G PI + + +LY K+
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELY-KS 59
Query: 1665 LS--PIEIQNK---ARALA-YEKIEQQKMDFMRLGILGEWDNSYKTMD-----FLN-EAN 1712
L P E K + Y E+ K D R+G +W + T D F+ +
Sbjct: 60 LYGIPEEELEKFKDPEYIVEYFS-EEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFR 118
Query: 1713 ELRAFGIIFKKGYVYHGLKPVNWCFDCKSAL--------AEAEIEYKKKYDFSIYVGFSF 1764
+L+ +KG + G PV +C + + + E EI ++++
Sbjct: 119 KLK------EKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIV-----EYTL------ 161
Query: 1765 SEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLI 1824
+K S + T P TI L V+P+ Y + + I
Sbjct: 162 -----------IKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGE---KWI 207
Query: 1825 LAFNLVKSCLKKFGFKGN---IIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYIT 1881
++ K +K F+ II KG +L +P++ ++ PI D++
Sbjct: 208 VS----KEAAEKLSFQDRDVEIIEEIKGSELIGKKVKNPVTGKEV------PILPADFVD 257
Query: 1882 VDSGTGIVHSAPAYGIEDFLIFK--KQNMKDSDIINPV---------------------- 1917
D+GTG+V S PA+ D++ + K+N + D+I P+
Sbjct: 258 PDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGI 317
Query: 1918 -------MDD------------GNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMF 1958
+++ G + G + +A + I L + + F
Sbjct: 318 KSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEF 377
Query: 1959 EHSYMHCWRHKTPIIYRTTL-QWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRL 2017
+ ++C R T + + QWFI+ + + +E A A++ ++ P +
Sbjct: 378 SNRPVYC-RCGTECVVKVVKDQWFIDYS----DPE--WKELAHKALDNMEIIPEEYRKEF 430
Query: 2018 KSMILNRPDWTISRQRHWGVPIAF 2041
++ I D +R+R G + +
Sbjct: 431 ENTIDWLKDRACARRRGLGTRLPW 454
>gnl|CDD|232920 TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This
model describes the ribD protein as found in Escherichia
coli. The N-terminal domain includes the conserved
zinc-binding site region captured in the model
dCMP_cyt_deam and shared by proteins such as cytosine
deaminase, mammalian apolipoprotein B mRNA editing
protein, blasticidin-S deaminase, and Bacillus subtilis
competence protein comEB. The C-terminal domain is
homologous to the full length of yeast HTP reductase, a
protein required for riboflavin biosynthesis. A number
of archaeal proteins believed related to riboflavin
biosynthesis contain only this C-terminal domain and are
not found as full-length matches to this model
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Riboflavin, FMN, and FAD].
Length = 344
Score = 61.4 bits (149), Expect = 2e-09
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 20/127 (15%)
Query: 67 PVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPC 126
VG V+VKN ++ G +Q+ HAE+ ALR A + K YVTLEPC
Sbjct: 20 LVGCVIVKNGEIVGEGAHQKAGE----PHAEVHALRQAGENA------KGATAYVTLEPC 69
Query: 127 AM------CAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQC 180
+ CA AII + +++ G ++ + +T G+++++
Sbjct: 70 SHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLKQAGIE----VTFGILKEEA 125
Query: 181 EKLLKSF 187
E+L K F
Sbjct: 126 ERLNKGF 132
>gnl|CDD|238406 cd00786, cytidine_deaminase-like, Cytidine and deoxycytidylate
deaminase zinc-binding region. The family contains
cytidine deaminases, nucleoside deaminases,
deoxycytidylate deaminases and riboflavin deaminases.
Also included are the apoBec family of mRNA editing
enzymes. All members are Zn dependent. The zinc ion in
the active site plays a central role in the proposed
catalytic mechanism, activating a water molecule to form
a hydroxide ion that performs a nucleophilic attack on
the substrate.
Length = 96
Score = 55.6 bits (134), Expect = 4e-09
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 64 GEVPVGAVLVKNNL--VISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV 121
VGA LV + G N + HAE AL A + +K +YV
Sbjct: 16 SNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNA----GSEGDTKGQMLYV 71
Query: 122 TLEPCAMCAGAIIHVRLGEII 142
L PC CA II + + ++I
Sbjct: 72 ALSPCGACAQLIIELGIKDVI 92
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 61.6 bits (151), Expect = 5e-09
Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 47/186 (25%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPK--FILHDGPPYANGDIHIGHAVNKILKDIIVKFY 1633
E W K W+E K + K + + K ++L D PY +G +H+GH N + D+I ++
Sbjct: 11 EKKWQKYWEENKTF----KTTEDSSKKYYVL-DMFPYPSGGLHMGHVRNYTIGDVIARYK 65
Query: 1634 NMDGFDAQYV--P-GYDCHGMPIEIQIEKLYGKNLSPIEIQNKA--RALAYEKIEQQKMD 1688
M G++ V P G+D G+P E N + I+ YE I K
Sbjct: 66 RMQGYN---VLHPMGWDAFGLPAE---------NAA---IKTGTHPAEWTYENIANMKKQ 110
Query: 1689 FMRLGILGEWDNSYKTMD----------FLNEANELRAFGIIFKKGYVYHGLKPVNWCFD 1738
LG +W T D FL +++KG Y PVNWC
Sbjct: 111 LKSLGFSYDWSREIATCDPEYYKWTQWIFL----------KLYEKGLAYRKESPVNWCPV 160
Query: 1739 CKSALA 1744
+ LA
Sbjct: 161 DGTVLA 166
Score = 54.3 bits (132), Expect = 8e-07
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 1001 PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 1043
P+K LLT G V KMSKSKGN++ P + +GA+ RL
Sbjct: 559 PFKKLLTQGMV------KMSKSKGNVVDPDDIIEKYGADTARL 595
Score = 54.3 bits (132), Expect = 8e-07
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 2151 PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 2193
P+K LLT G V KMSKSKGN++ P + +GA+ RL
Sbjct: 559 PFKKLLTQGMV------KMSKSKGNVVDPDDIIEKYGADTARL 595
Score = 52.0 bits (126), Expect = 4e-06
Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 40/151 (26%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYV--P-GYDCHGMPIEIQIEKLYGKNL 515
PY +G +H+GH N + D+I ++ M G++ V P G+D G+P E N
Sbjct: 41 PYPSGGLHMGHVRNYTIGDVIARYKRMQGYN---VLHPMGWDAFGLPAE---------NA 88
Query: 516 SPIEIQNKA--RALAYEKIEQQKMDFMRLGILGEWDNSYKTMD----------FLNEANE 563
+ I+ YE I K LG +W T D FL
Sbjct: 89 A---IKTGTHPAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFL----- 140
Query: 564 LRAFGIIFKKGYVYHGLKPVNWCFDCKSALA 594
+++KG Y PVNWC + LA
Sbjct: 141 -----KLYEKGLAYRKESPVNWCPVDGTVLA 166
Score = 37.8 bits (89), Expect = 0.095
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 876 DWTISRQRHWGVPIAFFIHKKSGKLHP 902
DW ISRQR+WG PI IH + + P
Sbjct: 417 DWGISRQRYWGEPIP-IIHCEDCGIVP 442
Score = 37.8 bits (89), Expect = 0.095
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 2026 DWTISRQRHWGVPIAFFIHKKSGKLHP 2052
DW ISRQR+WG PI IH + + P
Sbjct: 417 DWGISRQRYWGEPIP-IIHCEDCGIVP 442
>gnl|CDD|225042 COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and
metabolism].
Length = 164
Score = 56.6 bits (137), Expect = 8e-09
Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 28/134 (20%)
Query: 57 AKLALIAGEVP---VGAVLVKNNLVISYGYNQQ-------ITRNDP-------------- 92
A+L + P VGAV+VK+ +I+ GYN I R
Sbjct: 16 AELVALRSTCPRRQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCC 75
Query: 93 -TAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTG 151
T HAE A+ A++ + +YVT PC+ CA II + E++Y P
Sbjct: 76 RTLHAEQNAILQAARHG---VGLEGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTET 132
Query: 152 ACGSIINLFQEKKL 165
L +E +
Sbjct: 133 VAPYSQELLEEAGV 146
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 59.7 bits (146), Expect = 1e-08
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 1009 GFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 1067
GFV V+ G+KMSKS GN + L + E+LR ++ S Y L+ S E L + +
Sbjct: 258 GFVTVN--GEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKA 315
Query: 1068 YRRIRNTLRFLLANTSDFNPNINI 1091
R+ N L D +
Sbjct: 316 LERLYNALAETALGEDDEALLAEL 339
Score = 59.7 bits (146), Expect = 1e-08
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 2159 GFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 2217
GFV V+ G+KMSKS GN + L + E+LR ++ S Y L+ S E L + +
Sbjct: 258 GFVTVN--GEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKA 315
Query: 2218 YRRIRNTLRFLLANTSDFNPNINI 2241
R+ N L D +
Sbjct: 316 LERLYNALAETALGEDDEALLAEL 339
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 55.3 bits (134), Expect = 4e-07
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 35/202 (17%)
Query: 945 TLDVWFDS--------GITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIIL 996
+ VWFD+ G + + +PAD++L G D R FH+
Sbjct: 221 VIYVWFDALTNYLTALGYPDDEELLAELFNKY-WPADVHLIGKDILR--FHAVY--WPAF 275
Query: 997 NKSAPY---KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST----- 1048
+A K + HGF+ G+KMSKS GN+I P L + +G + +R ++
Sbjct: 276 LMAAGLPLPKRVFAHGFLTL-DGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQ 334
Query: 1049 --DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDF---NPNINIIKISDMVEIDKY 1103
D+S++ I +N + N L L T N + + + + E D+
Sbjct: 335 DGDFSREAFI--NRINADLA------NDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEA 386
Query: 1104 AIINITNLQKEILSHYRMYEFH 1125
+ L + + + F
Sbjct: 387 LLEAAAALLERVRAAMDNLAFD 408
Score = 55.3 bits (134), Expect = 4e-07
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 35/202 (17%)
Query: 2095 TLDVWFDS--------GITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIIL 2146
+ VWFD+ G + + +PAD++L G D R FH+
Sbjct: 221 VIYVWFDALTNYLTALGYPDDEELLAELFNKY-WPADVHLIGKDILR--FHAVY--WPAF 275
Query: 2147 NKSAPY---KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST----- 2198
+A K + HGF+ G+KMSKS GN+I P L + +G + +R ++
Sbjct: 276 LMAAGLPLPKRVFAHGFLTL-DGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQ 334
Query: 2199 --DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDF---NPNINIIKISDMVEIDKY 2253
D+S++ I +N + N L L T N + + + + E D+
Sbjct: 335 DGDFSREAFI--NRINADLA------NDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEA 386
Query: 2254 AIINITNLQKEILSHYRMYEFH 2275
+ L + + + F
Sbjct: 387 LLEAAAALLERVRAAMDNLAFD 408
Score = 47.2 bits (113), Expect = 1e-04
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 510
KF + Y NG HIGHA + D++ +F + G+D ++ G D HG I+ + E+
Sbjct: 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEE- 60
Query: 511 YGKNLSPIEI 520
+SP E+
Sbjct: 61 --AGISPQEL 68
Score = 47.2 bits (113), Expect = 1e-04
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 1660
KF + Y NG HIGHA + D++ +F + G+D ++ G D HG I+ + E+
Sbjct: 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEE- 60
Query: 1661 YGKNLSPIEI 1670
+SP E+
Sbjct: 61 --AGISPQEL 68
>gnl|CDD|203527 pfam06827, zf-FPG_IleRS, Zinc finger found in FPG and IleRS. This
zinc binding domain is found at the C-terminus of
isoleucyl tRNA synthetase and the enzyme
Formamidopyrimidine-DNA glycosylase EC:3.2.2.23.
Length = 30
Score = 47.7 bits (114), Expect = 4e-07
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 1307 YKKCNRCWHYQADVGERDDYPDLCNRCFNN 1336
+KC RCW+Y DVG+ LC RC
Sbjct: 1 GEKCPRCWNYIEDVGQGGRSTFLCPRCQKV 30
Score = 47.7 bits (114), Expect = 4e-07
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 2457 YKKCNRCWHYQADVGERDDYPDLCNRCFNN 2486
+KC RCW+Y DVG+ LC RC
Sbjct: 1 GEKCPRCWNYIEDVGQGGRSTFLCPRCQKV 30
>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA
synthetases. This domain is found in valyl tRNA
synthetases (ValRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ValRS catalyzes the transfer
of valine to the 3'-end of its tRNA.
Length = 135
Score = 50.6 bits (122), Expect = 6e-07
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 1064 VVETYRRIRNTL----RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY 1119
VE R N L RF+L N D + + D++ + + +E+
Sbjct: 5 RVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLS--LADRWILSRLNKTVEEVTEAL 62
Query: 1120 RMYEFHMIVSKLQ-----IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQS 1174
Y F + L +C +YL+++K RLY ++ +++A+ +++++ ++
Sbjct: 63 ENYRFSEAATALYEFFWNDFCD-----WYLELVKPRLY--GEDEEEKKAARATLYYVLET 115
Query: 1175 LLRLISPILSFTSEEAWSIF 1194
+LRL+ P + F +EE W
Sbjct: 116 ILRLLHPFMPFITEELWQRL 135
Score = 50.6 bits (122), Expect = 6e-07
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 2214 VVETYRRIRNTL----RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY 2269
VE R N L RF+L N D + + D++ + + +E+
Sbjct: 5 RVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLS--LADRWILSRLNKTVEEVTEAL 62
Query: 2270 RMYEFHMIVSKLQ-----IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQS 2324
Y F + L +C +YL+++K RLY ++ +++A+ +++++ ++
Sbjct: 63 ENYRFSEAATALYEFFWNDFCD-----WYLELVKPRLY--GEDEEEKKAARATLYYVLET 115
Query: 2325 LLRLISPILSFTSEEAWSIF 2344
+LRL+ P + F +EE W
Sbjct: 116 ILRLLHPFMPFITEELWQRL 135
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 50.6 bits (122), Expect = 1e-05
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y NG HIGHA I D + ++ + G+D ++ G D HG I+ EK +P E
Sbjct: 14 YPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEK---AGKTPQE 70
Score = 50.6 bits (122), Expect = 1e-05
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y NG HIGHA I D + ++ + G+D ++ G D HG I+ EK +P E
Sbjct: 14 YPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEK---AGKTPQE 70
Score = 49.4 bits (119), Expect = 2e-05
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 18/105 (17%)
Query: 948 VWFDSGITHQTVI----RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSI---ILNKSA 1000
VW D+ + + T + + +PAD++L G D R FH+ I I+ +
Sbjct: 227 VWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILR--FHA-----IYWPIMLMAL 279
Query: 1001 ---PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 1042
K + HG+ + K KMSKSKGN++ P++L + +G + LR
Sbjct: 280 GLPLPKKVFAHGWWL-MKDGKMSKSKGNVVDPEELVDRYGLDALR 323
Score = 49.4 bits (119), Expect = 2e-05
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 18/105 (17%)
Query: 2098 VWFDSGITHQTVI----RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSI---ILNKSA 2150
VW D+ + + T + + +PAD++L G D R FH+ I I+ +
Sbjct: 227 VWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILR--FHA-----IYWPIMLMAL 279
Query: 2151 ---PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 2192
K + HG+ + K KMSKSKGN++ P++L + +G + LR
Sbjct: 280 GLPLPKKVFAHGWWL-MKDGKMSKSKGNVVDPEELVDRYGLDALR 323
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 49.7 bits (118), Expect = 2e-05
Identities = 45/181 (24%), Positives = 87/181 (48%), Gaps = 20/181 (11%)
Query: 917 LNGIEIWQNLDIKEF-LGDDAVNY-----KKSNDTLDVWFDSGITHQTVIRGSHKKQLI- 969
LN ++ W +++F + V++ T+ VWFD+ + + + + +K+Q +
Sbjct: 254 LNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQNLE 313
Query: 970 ------FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKS 1022
+PA L+L G D R FH+ +++++ K + HGF+ G KM KS
Sbjct: 314 TAVSFGWPASLHLIGKDILR--FHAVYWPAMLMSAGLELPKMVFGHGFLT-KDGMKMGKS 370
Query: 1023 KGNIIKPQKLCNLFGAEILR-LWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLAN 1081
GN ++P +L FG + +R ++ ++ D S + ++V + + NT+ LL
Sbjct: 371 LGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAH--LANTIGNLLNR 428
Query: 1082 T 1082
T
Sbjct: 429 T 429
Score = 49.7 bits (118), Expect = 2e-05
Identities = 45/181 (24%), Positives = 87/181 (48%), Gaps = 20/181 (11%)
Query: 2067 LNGIEIWQNLDIKEF-LGDDAVNY-----KKSNDTLDVWFDSGITHQTVIRGSHKKQLI- 2119
LN ++ W +++F + V++ T+ VWFD+ + + + + +K+Q +
Sbjct: 254 LNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQNLE 313
Query: 2120 ------FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKS 2172
+PA L+L G D R FH+ +++++ K + HGF+ G KM KS
Sbjct: 314 TAVSFGWPASLHLIGKDILR--FHAVYWPAMLMSAGLELPKMVFGHGFLT-KDGMKMGKS 370
Query: 2173 KGNIIKPQKLCNLFGAEILR-LWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLAN 2231
GN ++P +L FG + +R ++ ++ D S + ++V + + NT+ LL
Sbjct: 371 LGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAH--LANTIGNLLNR 428
Query: 2232 T 2232
T
Sbjct: 429 T 429
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 47.4 bits (113), Expect = 9e-05
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 1008 HGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 1067
H + +KMSKS GN + + + EILR ++ S Y L S E+L
Sbjct: 255 HNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNA 314
Query: 1068 YRRIRNTLRFL 1078
R+ LR L
Sbjct: 315 LERLYKALRVL 325
Score = 47.4 bits (113), Expect = 9e-05
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 2158 HGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 2217
H + +KMSKS GN + + + EILR ++ S Y L S E+L
Sbjct: 255 HNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNA 314
Query: 2218 YRRIRNTLRFL 2228
R+ LR L
Sbjct: 315 LERLYKALRVL 325
>gnl|CDD|182729 PRK10786, ribD, bifunctional
diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase; Provisional.
Length = 367
Score = 46.7 bits (111), Expect = 1e-04
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 16/73 (21%)
Query: 68 VGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCA 127
VG V+VK+ ++ GY+Q+ +P HAE+ ALRMA + +K YVTLEPC+
Sbjct: 27 VGCVIVKDGEIVGEGYHQR--AGEP--HAEVHALRMAGEK------AKGATAYVTLEPCS 76
Query: 128 M------CAGAII 134
C A+I
Sbjct: 77 HHGRTPPCCDALI 89
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
aminoacyl tRNA synthetases and similar domains. This
domain is found in a variety of class Ia aminoacyl tRNA
synthetases, C-terminal to the catalytic core domain. It
recognizes and specifically binds to the anticodon of the
tRNA. Aminoacyl tRNA synthetases catalyze the transfer of
cognate amino acids to the 3'-end of their tRNAs by
specifically recognizing cognate from non-cognate amino
acids. Members include valyl-, leucyl-, isoleucyl-,
cysteinyl-, arginyl-, and methionyl-tRNA synthethases.
This superfamily also includes a domain from MshC, an
enzyme in the mycothiol biosynthetic pathway.
Length = 117
Score = 41.7 bits (98), Expect = 5e-04
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 9/125 (7%)
Query: 1059 EILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSH 1118
E L + R+ L F P + E D+ + + K +
Sbjct: 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPK---WDNELLEEADRELLARLQEFIKRTTNA 58
Query: 1119 YRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRL 1178
+ V +L + +E ++YLD LK L T + + ++ L +L
Sbjct: 59 LEALDPTTAVQELFKFTNEL--NWYLDELKPALQTEELREAVLAVLRAALVV----LTKL 112
Query: 1179 ISPIL 1183
++P
Sbjct: 113 LAPFT 117
Score = 41.7 bits (98), Expect = 5e-04
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 9/125 (7%)
Query: 2209 EILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSH 2268
E L + R+ L F P + E D+ + + K +
Sbjct: 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPK---WDNELLEEADRELLARLQEFIKRTTNA 58
Query: 2269 YRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRL 2328
+ V +L + +E ++YLD LK L T + + ++ L +L
Sbjct: 59 LEALDPTTAVQELFKFTNEL--NWYLDELKPALQTEELREAVLAVLRAALVV----LTKL 112
Query: 2329 ISPIL 2333
++P
Sbjct: 113 LAPFT 117
>gnl|CDD|215433 PLN02807, PLN02807, diaminohydroxyphosphoribosylaminopyrimidine
deaminase.
Length = 380
Score = 44.4 bits (105), Expect = 6e-04
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 26/130 (20%)
Query: 68 VGAVLVKNNLVISYGYNQQITRNDPTA---HAEIIALRMASKLLNNYRFSKNYKIYVTLE 124
VG V+VK+ ++ G++ P A HAE+ ALR A L ++N YV+LE
Sbjct: 56 VGCVIVKDGRIVGEGFH-------PKAGQPHAEVFALRDAGDL------AENATAYVSLE 102
Query: 125 PCAM------CAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQK 178
PC C A+I ++ ++ G I ++ + +T GV ++
Sbjct: 103 PCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGIERLRDAGIE----VTVGVEEE 158
Query: 179 QCEKLLKSFF 188
C KL ++F
Sbjct: 159 LCRKLNEAFI 168
>gnl|CDD|216786 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K). This family
includes only lysyl tRNA synthetases from prokaryotes.
Length = 357
Score = 43.8 bits (104), Expect = 9e-04
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 988 SSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 1047
SS + IL P + ++ G KMS SKGN+I + E LR +
Sbjct: 251 SSRIAREILGGEPPEP--FPYELILLKGGGKMSSSKGNVITIEDWLEYAPPESLRFLMFR 308
Query: 1048 TDYSKDLSISNEILNRVVETYRRIRN 1073
K + +++ ++V+ Y R+
Sbjct: 309 VKPKKAKRLDFDVIPKLVDEYDRLER 334
Score = 43.8 bits (104), Expect = 9e-04
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 2138 SSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197
SS + IL P + ++ G KMS SKGN+I + E LR +
Sbjct: 251 SSRIAREILGGEPPEP--FPYELILLKGGGKMSSSKGNVITIEDWLEYAPPESLRFLMFR 308
Query: 2198 TDYSKDLSISNEILNRVVETYRRIRN 2223
K + +++ ++V+ Y R+
Sbjct: 309 VKPKKAKRLDFDVIPKLVDEYDRLER 334
>gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I lysyl
tRNA synthetase. Class I lysyl tRNA synthetase (LysRS)
catalytic core domain. This class I enzyme is a monomer
which aminoacylates the 2'-OH of the nucleotide at the 3'
of the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. The class I
LysRS is found only in archaea and some bacteria and has
evolved separately from class II LysRS, as the two do not
share structural or sequence similarity.
Length = 353
Score = 43.5 bits (103), Expect = 0.001
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 988 SSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 1047
+ I P + + F+ G KMS SKGN+I P + E+LR A
Sbjct: 247 GKEIAREIFGGEPPVP--VMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYAR 304
Query: 1048 T-DYSKDLSISNEILNRVVETYR 1069
+ K + +IL E R
Sbjct: 305 RKNPEKHIGFDLDILRLYDEYDR 327
Score = 43.5 bits (103), Expect = 0.001
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 2138 SSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197
+ I P + + F+ G KMS SKGN+I P + E+LR A
Sbjct: 247 GKEIAREIFGGEPPVP--VMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYAR 304
Query: 2198 T-DYSKDLSISNEILNRVVETYR 2219
+ K + +IL E R
Sbjct: 305 RKNPEKHIGFDLDILRLYDEYDR 327
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 41.4 bits (98), Expect = 0.003
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 1015 KGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDL 1054
G+KMSKS GN I + + E+LRL + S+ Y L
Sbjct: 171 DGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPL 210
Score = 41.4 bits (98), Expect = 0.003
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 2165 KGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDL 2204
G+KMSKS GN I + + E+LRL + S+ Y L
Sbjct: 171 DGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPL 210
>gnl|CDD|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.
Length = 510
Score = 42.5 bits (101), Expect = 0.003
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 995 ILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWV-ASTDYSKD 1053
IL P + +D KG+K+SKSKGN+I + E LRL++ A +K
Sbjct: 259 ILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKR 316
Query: 1054 LSISNEILNRVVETYRR 1070
L + ++V+ Y R
Sbjct: 317 LDFDV--IPKLVDEYDR 331
Score = 42.5 bits (101), Expect = 0.003
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 2145 ILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWV-ASTDYSKD 2203
IL P + +D KG+K+SKSKGN+I + E LRL++ A +K
Sbjct: 259 ILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKR 316
Query: 2204 LSISNEILNRVVETYRR 2220
L + ++V+ Y R
Sbjct: 317 LDFDV--IPKLVDEYDR 331
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 40.4 bits (95), Expect = 0.017
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 1581 KKWQEKKIYH--QIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGF 1638
K W+E+K++ + KF + PY NG +H+GHA + + ++ + G
Sbjct: 24 KWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGA 83
Query: 1639 DAQYVPGYDCHGMPIEIQIEKL 1660
+ + C GMPI+ +KL
Sbjct: 84 NVLLPFAFHCTGMPIKASADKL 105
Score = 35.0 bits (81), Expect = 0.71
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK 509
KF + PY NG +H+GHA + + ++ + G + + C GMPI+ +K
Sbjct: 45 EKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADK 104
Query: 510 L 510
L
Sbjct: 105 L 105
>gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of archaeal,
bacterial, and eukaryotic cytoplasmic isoleucyl tRNA
synthetases. This domain is found in isoleucyl tRNA
synthetases (IleRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. This family includes
bacterial, archaeal, and eukaryotic cytoplasmic members.
IleRS catalyzes the transfer of isoleucine to the 3'-end
of its tRNA.
Length = 183
Score = 38.3 bits (90), Expect = 0.018
Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 1073 NTLRFLL--ANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSK 1130
N RF + AN F+P + ++ + +D++ + + +L KE+ Y+ + V
Sbjct: 19 NAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRA 78
Query: 1131 LQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEA 1190
L + E ++Y+ + R + + + +A +++ + +L RL++P F +EE
Sbjct: 79 LLEFIDELT-NWYIRRNRKRFWGE-EGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEI 136
Query: 1191 W 1191
+
Sbjct: 137 Y 137
Score = 38.3 bits (90), Expect = 0.018
Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 2223 NTLRFLL--ANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSK 2280
N RF + AN F+P + ++ + +D++ + + +L KE+ Y+ + V
Sbjct: 19 NAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRA 78
Query: 2281 LQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEA 2340
L + E ++Y+ + R + + + +A +++ + +L RL++P F +EE
Sbjct: 79 LLEFIDELT-NWYIRRNRKRFWGE-EGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEI 136
Query: 2341 W 2341
+
Sbjct: 137 Y 137
>gnl|CDD|224302 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation,
ribosomal structure and biogenesis].
Length = 521
Score = 40.0 bits (94), Expect = 0.019
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 995 ILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSK-- 1052
I P + +++ G KMS SKGN+I + E+LR +A T ++
Sbjct: 256 IFGYEPPVP--FVYEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNRHI 313
Query: 1053 DLSISNEILNRVVETYR 1069
D IL V E R
Sbjct: 314 DFDFDLGILKLVDEYDR 330
Score = 40.0 bits (94), Expect = 0.019
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 2145 ILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSK-- 2202
I P + +++ G KMS SKGN+I + E+LR +A T ++
Sbjct: 256 IFGYEPPVP--FVYEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNRHI 313
Query: 2203 DLSISNEILNRVVETYR 2219
D IL V E R
Sbjct: 314 DFDFDLGILKLVDEYDR 330
>gnl|CDD|131622 TIGR02571, ComEB, ComE operon protein 2. This protein is found in
the ComE operon for "late competence" as characterized
in B. subtilis. Proteins in this family contain homology
to a cytidine/deoxycytidine deaminase domain family
(pfam00383), and may carry out this activity.
Length = 151
Score = 37.5 bits (87), Expect = 0.023
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 18/91 (19%)
Query: 68 VGAVLVKNNLVISYGYNQQITRND---------------PTAHAEIIALRMASKLLNNYR 112
VGA +V++ +I+ GYN + T HAE+ AL +K +
Sbjct: 27 VGATIVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAKFGVS-- 84
Query: 113 FSKNYKIYVTLEPCAMCAGAIIHVRLGEIIY 143
++ +IYVT PC C +II + +I Y
Sbjct: 85 -TEGAEIYVTHFPCLQCTKSIIQAGIKKIYY 114
>gnl|CDD|238610 cd01283, cytidine_deaminase, Cytidine deaminase zinc-binding
domain. These enzymes are Zn dependent. The zinc ion in
the active site plays a central role in the proposed
catalytic mechanism, activating a water molecule to form
a hydroxide ion that performs a nucleophilic attack on
the substrate. Cytidine deaminases catalyze the
deamination of cytidine to uridine and are important in
the pyrimadine salvage pathway in many cell types, from
bacteria to humans. This family also includes the
apoBec proteins, which are a mammal specific expansion
of RNA editing enzymes, and the closely related
phorbolins, and the AID (activation-induced) enzymes.
Length = 112
Score = 36.6 bits (85), Expect = 0.025
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 67 PVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIAL-RMASKLLNNYRFSKNYKIYVTLE- 124
VGA L+ + I G N + T AE A+ + S+ L Y V+ E
Sbjct: 19 TVGAALLTKDGRIFTGVNVENASYGLTLCAERTAIGKAVSEGLRRYL----VTWAVSDEG 74
Query: 125 ----PCAMCAGAII 134
PC C +
Sbjct: 75 GVWSPCGACRQVLA 88
>gnl|CDD|206605 pfam14439, Bd3614-deam, Bd3614-like deaminase. A member of the
nucleic acid/nucleotide deaminase superfamily prototyped
by Bdellovibrio Bd3614. They are typified by a distinct
N-terminal globular domain. The Bdellovibrio version
occurs in a predicted operon with a 23S rRNA
G2445-modifying methylase suggesting that it might be
involved in RNA editing.
Length = 113
Score = 36.4 bits (84), Expect = 0.028
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 68 VGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCA 127
V A++ ++ N + T HAE+ L+ + ++ VTL+ C
Sbjct: 11 VAALVSPRGQLLDAAVN--TNAKNKTLHAEVNLLQPLLRETARRPIPPGARLLVTLQCCK 68
Query: 128 MCAGAIIH--VRLG--EIIYGTP 146
MCA + G +++Y
Sbjct: 69 MCAALVCAACDDPGQRKVVYLVE 91
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 38.9 bits (91), Expect = 0.029
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 1015 KGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVV 1065
+G+KMSKS GN + + + + ILR ++ S Y L S E+L +
Sbjct: 250 EGEKMSKSLGNFLTIRDVLKRYDPRILRYFLLSVHYRSPLDFSEELLEQAK 300
Score = 38.9 bits (91), Expect = 0.029
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 2165 KGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVV 2215
+G+KMSKS GN + + + + ILR ++ S Y L S E+L +
Sbjct: 250 EGEKMSKSLGNFLTIRDVLKRYDPRILRYFLLSVHYRSPLDFSEELLEQAK 300
>gnl|CDD|222894 PHA02588, cd, deoxycytidylate deaminase; Provisional.
Length = 168
Score = 37.4 bits (87), Expect = 0.029
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 35/109 (32%)
Query: 68 VGAVLVKNNLVISYGYN-------------------------QQITRNDPTA-------H 95
VGAV+ KN +IS GYN ++ R + +A H
Sbjct: 24 VGAVIEKNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSKNEIH 83
Query: 96 AEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYG 144
AE+ A+ A++ N + +YVT PC CA AI + +++Y
Sbjct: 84 AELNAILFAAR---NGISIEGATMYVTASPCPDCAKAIAQSGIKKLVYC 129
>gnl|CDD|171118 PRK11449, PRK11449, putative deoxyribonuclease YjjV; Provisional.
Length = 258
Score = 38.0 bits (88), Expect = 0.038
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSP 48
SL A ++LG+ I G +T+ + + V+ + L ++L+ETD+P
Sbjct: 162 SLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAP 209
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2. This
is a family of the conserved region of Leucine-tRNA
ligase or Leucyl-tRNA synthetase, EC:6.1.1.4.
Length = 178
Score = 36.7 bits (86), Expect = 0.063
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 709 HPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV- 767
HP++ I PI++ +++ +D GTG V + PA+ DF KK N+ +I P
Sbjct: 84 HPITGEKI------PIWIANFVLMDYGTGAVMAVPAHDQRDFEFAKKYNLPIKQVIKPED 137
Query: 768 MDDGNFISTLPL-----------FGGMSIWKASKLICSYL 796
D+ + I F G+ +A + I L
Sbjct: 138 GDEDDLIMEEAYTEKGILINSGEFDGLDSEEAKEAIAEKL 177
Score = 36.7 bits (86), Expect = 0.063
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 1859 HPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV- 1917
HP++ I PI++ +++ +D GTG V + PA+ DF KK N+ +I P
Sbjct: 84 HPITGEKI------PIWIANFVLMDYGTGAVMAVPAHDQRDFEFAKKYNLPIKQVIKPED 137
Query: 1918 MDDGNFISTLPL-----------FGGMSIWKASKLICSYL 1946
D+ + I F G+ +A + I L
Sbjct: 138 GDEDDLIMEEAYTEKGILINSGEFDGLDSEEAKEAIAEKL 177
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 38.0 bits (88), Expect = 0.063
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 1008 HGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 1066
+GFV VDS+ KMSKS GN +++ +L+ LRL++ T Y ++ S+ L E
Sbjct: 314 NGFVTVDSE--KMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESASE 371
Query: 1067 TYRRIRNTLR 1076
I TL
Sbjct: 372 RIFYIYQTLH 381
Score = 38.0 bits (88), Expect = 0.063
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 2158 HGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 2216
+GFV VDS+ KMSKS GN +++ +L+ LRL++ T Y ++ S+ L E
Sbjct: 314 NGFVTVDSE--KMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESASE 371
Query: 2217 TYRRIRNTLR 2226
I TL
Sbjct: 372 RIFYIYQTLH 381
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic
core domain. TyrRS is a homodimer which attaches Tyr to
the appropriate tRNA. TyrRS is a class I tRNA
synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formationof the enzyme bound
aminoacyl-adenylate. It contains the class I
characteristic HIGH and KMSKS motifs, which are involved
in ATP binding.
Length = 269
Score = 35.7 bits (83), Expect = 0.23
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 17/84 (20%)
Query: 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYK--ALLTHGFVVDSKGKKMSKSKGNIIKP 1029
DL L GSDQ + + L + YK LT + G KMSKS+GN I
Sbjct: 152 VDLQLGGSDQ---RGN--ITLGRDLIRKLGYKKVVGLTTPLLTGLDGGKMSKSEGNAIWD 206
Query: 1030 ----------QKLCNLFGAEILRL 1043
QK+ N F ++L
Sbjct: 207 PVLDSPYDVYQKIRNAFDPDVLEF 230
Score = 35.7 bits (83), Expect = 0.23
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 17/84 (20%)
Query: 2122 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYK--ALLTHGFVVDSKGKKMSKSKGNIIKP 2179
DL L GSDQ + + L + YK LT + G KMSKS+GN I
Sbjct: 152 VDLQLGGSDQ---RGN--ITLGRDLIRKLGYKKVVGLTTPLLTGLDGGKMSKSEGNAIWD 206
Query: 2180 ----------QKLCNLFGAEILRL 2193
QK+ N F ++L
Sbjct: 207 PVLDSPYDVYQKIRNAFDPDVLEF 230
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 35.8 bits (82), Expect = 0.33
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 1003 KALLTHGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEIL 1061
K L +GF+ VD G+KMSKS GN +++ + E++R ++ Y L+ S+ L
Sbjct: 494 KYWLHNGFIRVD--GEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHL 551
Query: 1062 NRVVETYRRIRNTLRFLLANTSDFNPNIN 1090
+ R+ TL+ A + N+N
Sbjct: 552 DDAKGALTRLYTTLKNTPAAEFMLSENVN 580
Score = 35.8 bits (82), Expect = 0.33
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 2153 KALLTHGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEIL 2211
K L +GF+ VD G+KMSKS GN +++ + E++R ++ Y L+ S+ L
Sbjct: 494 KYWLHNGFIRVD--GEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHL 551
Query: 2212 NRVVETYRRIRNTLRFLLANTSDFNPNIN 2240
+ R+ TL+ A + N+N
Sbjct: 552 DDAKGALTRLYTTLKNTPAAEFMLSENVN 580
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase
(aaRS) catalytic core domain. These enzymes are mostly
monomers which aminoacylate the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic class
I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 33.6 bits (77), Expect = 0.42
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 966 KQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSK 1023
D++L GSDQ H L ++ P + G V+ + G KMSKSK
Sbjct: 88 LLYETECDIHLGGSDQ---LGHIELGLELLKKAGGPARPFGLTFGRVMGADGTKMSKSK 143
Score = 33.6 bits (77), Expect = 0.42
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 2116 KQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSK 2173
D++L GSDQ H L ++ P + G V+ + G KMSKSK
Sbjct: 88 LLYETECDIHLGGSDQ---LGHIELGLELLKKAGGPARPFGLTFGRVMGADGTKMSKSK 143
Score = 30.5 bits (69), Expect = 5.8
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 458 PPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSP 517
NG +HIGH + D + + Y G+ + + D G I K G+N
Sbjct: 5 GITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANK-KGENAKA 63
Query: 518 IEIQNKAR-ALAYEKIEQQKMDFMRLGI 544
+ R E + Q DF+ L
Sbjct: 64 FVERWIERIKEDVEYMFLQAADFLLLYE 91
Score = 30.5 bits (69), Expect = 5.8
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 1608 PPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSP 1667
NG +HIGH + D + + Y G+ + + D G I K G+N
Sbjct: 5 GITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANK-KGENAKA 63
Query: 1668 IEIQNKAR-ALAYEKIEQQKMDFMRLGI 1694
+ R E + Q DF+ L
Sbjct: 64 FVERWIERIKEDVEYMFLQAADFLLLYE 91
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y).
Length = 291
Score = 33.0 bits (76), Expect = 1.7
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 972 ADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKAL-LTHGFVVDSKG-KKMSKSKGN 1025
ADL GSDQ W H L + NK K + LT+ + G KKMSKS GN
Sbjct: 150 ADLQPGGSDQ---WGHIELGRDLARRFNKKVFKKPVGLTNPLLTGLDGGKKMSKSAGN 204
Score = 33.0 bits (76), Expect = 1.7
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 2122 ADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKAL-LTHGFVVDSKG-KKMSKSKGN 2175
ADL GSDQ W H L + NK K + LT+ + G KKMSKS GN
Sbjct: 150 ADLQPGGSDQ---WGHIELGRDLARRFNKKVFKKPVGLTNPLLTGLDGGKKMSKSAGN 204
>gnl|CDD|219747 pfam08210, APOBEC_N, APOBEC-like N-terminal domain. A mechanism of
generating protein diversity is mRNA editing. Members of
this family are C-to-U editing enzymes. The N-terminal
domain of APOBEC-1 like proteins is the catalytic
domain, while the C-terminal domain is a pseudocatalyitc
domain. More specifically, the catalytic domain is a
zinc dependent deaminases domain and is essential for
cytidine deamination.APOBEC-3 like members contain two
copies of this domain. RNA editing by APOBEC-1 requires
homodimerisation and this complex interacts with RNA
binding proteins to from the editosome (and references
therein). This family also includes the functionally
homologous activation induced deaminase (AID), which is
essential for the development of antibody diversity in B
lymphocytes, and the sea lamprey PmCDA1 and PmCDA2,
which are predicted to play an AID-like role in the
adaptive immune response of jawless vertebrates.
Divergent members of this family are present in various
eukaryotes such as Nematostella, C. elegans, Micromonas
and Emiliania, and prokaryotes such as Wolbachia and
Pseudomonas brassicacearum.
Length = 176
Score = 32.4 bits (74), Expect = 1.8
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 80 SYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKI--YVTLEPCAMCAGAIIH 135
Y N N + HAE R LL+ + Y I Y + PC CA +
Sbjct: 34 GYARN----ENKKSIHAEEQFFRAIESLLD-FNPGTIYTITWYSSWSPCFDCAEKLAE 86
>gnl|CDD|235008 PRK02135, PRK02135, hypothetical protein; Provisional.
Length = 201
Score = 31.8 bits (73), Expect = 3.1
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 1515 NNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGELSK 1574
+ + P+ ++G GFTE+EENL G +SLG ++L + + +++ EL +
Sbjct: 141 DVEFPENPVFVLGDHIGFTEEEENLLKRLGAEKISLGPKMLHADH----CITLIHNELDR 196
Query: 1575 REPGW 1579
R
Sbjct: 197 RGYER 201
>gnl|CDD|235645 PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.
Length = 408
Score = 32.0 bits (74), Expect = 4.5
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKAL--LTHGFVVDSKGKKMSKSKGNII 1027
DL L GSDQ W ++L+ L + K LT + GKKM KS+GN +
Sbjct: 189 CDLQLGGSDQ---WG--NILSGRDLQRRYGGKPQFGLTMPLLTGLDGKKMGKSEGNAV 241
Score = 32.0 bits (74), Expect = 4.5
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 2122 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKAL--LTHGFVVDSKGKKMSKSKGNII 2177
DL L GSDQ W ++L+ L + K LT + GKKM KS+GN +
Sbjct: 189 CDLQLGGSDQ---WG--NILSGRDLQRRYGGKPQFGLTMPLLTGLDGKKMGKSEGNAV 241
>gnl|CDD|147266 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 5, represents the discontinuous cleft
domain that is required to from the central cleft or
channel where the DNA is bound.
Length = 447
Score = 31.5 bits (72), Expect = 6.3
Identities = 20/139 (14%), Positives = 44/139 (31%), Gaps = 3/139 (2%)
Query: 183 LLKSFFIKRRNFVKNKSINIKMLRFYYPIPFIIGQYLYLPDNIVNHLNVLRVKYKNTIIL 242
L+K+ + K + +L I I Y D+ + R+ ++
Sbjct: 214 LIKNIVSDKARVKKQREEKTLLLLKKVTI---IIVIYYDDDSESTVIKKDRIWVLAYFVI 270
Query: 243 FNGFGGEYIAKLISIKKKILIQIISFLFREIELPYTITLVQALPENRKFDLIIEKSVELG 302
E +I I K+ + + + + L N+ +I V+ G
Sbjct: 271 PEEVAEEVALAIIIIGKRKSRKRKKNNLGVAKDEKGLEEEELLLLNKILLVIPGIKVKYG 330
Query: 303 VKIIQPIITNRCIIQLNNE 321
V + + I++ +
Sbjct: 331 VILTDGRVDPHTILEKLGK 349
>gnl|CDD|236915 PRK11475, PRK11475, DNA-binding transcriptional activator BglJ;
Provisional.
Length = 207
Score = 30.5 bits (69), Expect = 9.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 1144 LDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISP----ILSFTS 1187
L+IL+ L+ + + W+INQS R++SP IL F S
Sbjct: 102 LEILQQELFLSLNGVRQATDRLNNQWYINQS--RMLSPTEREILRFMS 147
Score = 30.5 bits (69), Expect = 9.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 2294 LDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISP----ILSFTS 2337
L+IL+ L+ + + W+INQS R++SP IL F S
Sbjct: 102 LEILQQELFLSLNGVRQATDRLNNQWYINQS--RMLSPTEREILRFMS 147
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.421
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 129,822,089
Number of extensions: 13443258
Number of successful extensions: 12105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11677
Number of HSP's successfully gapped: 318
Length of query: 2492
Length of database: 10,937,602
Length adjustment: 113
Effective length of query: 2379
Effective length of database: 5,925,600
Effective search space: 14097002400
Effective search space used: 14097002400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (29.9 bits)