RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15223
(2492 letters)
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET:
MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 1341 bits (3472), Expect = 0.0
Identities = 345/936 (36%), Positives = 525/936 (56%), Gaps = 58/936 (6%)
Query: 1570 GELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDII 1629
G L +EP +KW + YH+ + + FILHDGPPYANG++H+GHA+NKILKD I
Sbjct: 18 GGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFI 77
Query: 1630 VKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLY--GKNLSPIEIQNKARALAYEKIEQQKM 1687
V++ M GF A YVPG+D HG+PIE + K K +S E + K + A E+IE QK
Sbjct: 78 VRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKK 137
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
DF RLG+ G++++ Y T+ EA ++R FG + KG +Y G KPV W +S+LAEAE
Sbjct: 138 DFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAE 197
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
IEY K SIYV F+ + K + +IWT+TPWTIP+N A+ VHPE
Sbjct: 198 IEYHDKRSASIYVAFNVKDD---------KGVVDADAKFIIWTTTPWTIPSNVAITVHPE 248
Query: 1808 FDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGN---IIGICKGIKLSKINFFHPLSNI 1864
Y ++ + I+A L + + + + G +L + HP
Sbjct: 249 LKYGQYNVNGE---KYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPF--- 302
Query: 1865 DINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFI 1924
+R S + GD++T D+GTG VH+AP +G +D+++ ++ + +I+P+ D G F
Sbjct: 303 ---LDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYEL---PVISPIDDKGVFT 356
Query: 1925 STLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINM 1984
F GM KA+K + L + L ++ HSY H WR K P+I+R T QWF ++
Sbjct: 357 EEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASI 416
Query: 1985 DKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIH 2044
K +R+ + AI F +WGK R+ +M+ +R +W ISRQR WGVP+ F +
Sbjct: 417 SK--------VRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVF-Y 467
Query: 2045 KKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFL-------GDDAVNYKKSNDTLD 2097
++G++ T E + +A +G IW + K+ L G + K D +D
Sbjct: 468 AENGEIIM-TKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMD 526
Query: 2098 VWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLT 2157
VWFDSG +H+ V+ + +L FPAD+YLEGSDQ+RGWF+SS+ TS+ +PYK LL+
Sbjct: 527 VWFDSGSSHRGVLE--TRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLS 584
Query: 2158 HGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 2217
HGFV+D +GKKMSKS GN+I P ++ GA+I RLWV+STDY D+ IS+EIL + +
Sbjct: 585 HGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDD 644
Query: 2218 YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMI 2277
YR+IRNTLRF+L N +DFNP+ + I S+++E+D+Y + + +++Y +++ I
Sbjct: 645 YRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNI 704
Query: 2278 VSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTS 2337
++Q + + +L +FYLD KD LY +++SH RRS QT ++ I + +L++PIL T+
Sbjct: 705 YQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTA 764
Query: 2338 EEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRS 2397
EE WS E++ K+ +V + LL K+ +R V + LE R+
Sbjct: 765 EEVWSHTPH-----VKEESVHLADMPKVVEV--DQALLDKWRTFMNLRDDVNRALETARN 817
Query: 2398 TGIIGSSLQAEIILKIN-KLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEE-----CII 2451
+IG SL+A++ + N K + + L + S V + + I+
Sbjct: 818 EKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDIV 877
Query: 2452 IKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNL 2487
I+ + +KC RCW+Y D+G D+ LC RC +
Sbjct: 878 IEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVV 913
Score = 1300 bits (3368), Expect = 0.0
Identities = 337/920 (36%), Positives = 515/920 (55%), Gaps = 59/920 (6%)
Query: 437 NGVWGEI-KASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPG 495
+ + + + FILHDGPPYANG++H+GHA+NKILKD IV++ M GF A YVPG
Sbjct: 34 EDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPG 93
Query: 496 YDCHGMPIEIQIEKLY--GKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYK 553
+D HG+PIE + K K +S E + K + A E+IE QK DF RLG+ G++++ Y
Sbjct: 94 WDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYI 153
Query: 554 TMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFS 613
T+ EA ++R FG + KG +Y G KPV W +S+LAEAEIEY K SIYV F+
Sbjct: 154 TLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFN 213
Query: 614 FSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLL 673
+ K + +IWT+TPWTIP+N A+ VHPE Y ++ +
Sbjct: 214 VKDD---------KGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGE---KY 261
Query: 674 ILAFNLVKSCLKKFGFKGN---IIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYI 730
I+A L + + + + G +L + HP +R S + GD++
Sbjct: 262 IIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPF------LDRESLVINGDHV 315
Query: 731 TVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASK 790
T D+GTG VH+AP +G +D+++ ++ + +I+P+ D G F F GM KA+K
Sbjct: 316 TTDAGTGCVHTAPGHGEDDYIVGQQYEL---PVISPIDDKGVFTEEGGQFEGMFYDKANK 372
Query: 791 LICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAI 850
+ L + L ++ HSY H WR K P+I+R T QWF ++ K +R+ +
Sbjct: 373 AVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISK--------VRQDIL 424
Query: 851 TAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIEL 910
AI F +WGK R+ +M+ +R +W ISRQR WGVP+ F + ++G++ T E +
Sbjct: 425 DAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVF-YAENGEIIM-TKETVNH 482
Query: 911 IAKKIELNGIEIWQNLDIKEFL-------GDDAVNYKKSNDTLDVWFDSGITHQTVIRGS 963
+A +G IW + K+ L G + K D +DVWFDSG +H+ V+
Sbjct: 483 VADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLE-- 540
Query: 964 HKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSK 1023
+ +L FPAD+YLEGSDQ+RGWF+SS+ TS+ +PYK LL+HGFV+D +GKKMSKS
Sbjct: 541 TRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSL 600
Query: 1024 GNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTS 1083
GN+I P ++ GA+I RLWV+STDY D+ IS+EIL + + YR+IRNTLRF+L N +
Sbjct: 601 GNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNIN 660
Query: 1084 DFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY 1143
DFNP+ + I S+++E+D+Y + + +++Y +++ I ++Q + + +L +FY
Sbjct: 661 DFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFY 720
Query: 1144 LDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIES 1203
LD KD LY +++SH RRS QT ++ I + +L++PIL T+EE WS
Sbjct: 721 LDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPH-----VK 775
Query: 1204 GETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKI 1263
E++ K+ +V + LL K+ +R V + LE R+ +IG SL+A++ +
Sbjct: 776 EESVHLADMPKVVEV--DQALLDKWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIAS 833
Query: 1264 N-KLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEE-----CIIIKPSIYKKCNRCWHYQ 1317
N K + + L + S V + + I+I+ + +KC RCW+Y
Sbjct: 834 NDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDIVIEHADGEKCERCWNYS 893
Query: 1318 ADVGERDDYPDLCNRCFNNL 1337
D+G D+ LC RC +
Sbjct: 894 EDLGAVDELTHLCPRCQQVV 913
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 766 bits (1980), Expect = 0.0
Identities = 204/796 (25%), Positives = 357/796 (44%), Gaps = 65/796 (8%)
Query: 1572 LSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVK 1631
K E + W+ +KI+ + + P++ +++GPP ANG H+GHA + KD+ +
Sbjct: 10 FPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPR 69
Query: 1632 FYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG-------KNLSPIEIQNKARALAYEKIEQ 1684
+ M G+ A G+D HG+P+E+++EK G + R + ++
Sbjct: 70 YKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKE 129
Query: 1685 QKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA 1744
+ R+ + +++Y T++ + + +F +G +Y K V +C C + L+
Sbjct: 130 WEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLS 189
Query: 1745 EAEIE--YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQAL 1802
E+ YK+ D S+YV F EP K L K ++IWT+TPWT+P N A
Sbjct: 190 SHEVALGYKEIQDPSVYVRFPLKEP---------KKLGLEKASLLIWTTTPWTLPGNVAA 240
Query: 1803 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLS 1862
VHPE+ YA + ++ LIL L + L + ++ G L + + P
Sbjct: 241 AVHPEYTYAAFQVGDE---ALILEEGLGRKLLGE---GTQVLKTFPGKALEGLPYTPPY- 293
Query: 1863 NIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGN 1922
+ + L DY++ + GTGIVH APA+G ED + + ++ V ++G
Sbjct: 294 --PQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGL---PLLKTVDEEGK 348
Query: 1923 FISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFI 1982
+ F G+ +A++ I L+ LF E + HSY HCWR TP++Y T WFI
Sbjct: 349 L--LVEPFKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFI 406
Query: 1983 NMDKIPKNEKKSLRESAITAINKIKFFPSWGKD-RLKSMILNRPDWTISRQRHWGVPIAF 2041
++ I +I + P K+ R + N DW +SR R+WG P+
Sbjct: 407 KNTLF--------KDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPI 458
Query: 2042 FIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDI-KEFLGDDAV-------NYKKSN 2093
++ + GK E I + + + D + ++ D ++
Sbjct: 459 WVCQACGK-----EEAIGSFQELKARATKPLPEPFDPHRPYV-DQVELACACGGTMRRVP 512
Query: 2094 DTLDVWFDSGITHQTVIRGSHKKQ----LIFPADLYLEGSDQHRGWFHSSLLTSIILNKS 2149
+DVW+DSG + + + FPAD EG DQ RGWF+S ++L S
Sbjct: 513 YVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGS 572
Query: 2150 APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWV-ASTDYSKDLSISN 2208
+K ++ HG ++D KG+KMSKSKGN++ P + FGA+ LR ++ S D
Sbjct: 573 IAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGP 632
Query: 2209 EILNRVV-ETYRRIRNTLRFLL--ANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI 2265
++ V + + + N F + AN + N E+D++ + + +L + +
Sbjct: 633 NLVRETVRDYFLTLWNVYSFFVTYANLDRPDLK-NPPPPEKRPEMDRWLLARMQDLIQRV 691
Query: 2266 LSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSL 2325
Y+ L+ + EDL +Y+ + R + +++ R +A +++ +
Sbjct: 692 TEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFW-KNEDALDREAAYATLYEALVLV 750
Query: 2326 LRLISPILSFTSEEAW 2341
L +P F +E W
Sbjct: 751 ATLAAPFTPFLAEVLW 766
Score = 743 bits (1921), Expect = 0.0
Identities = 199/775 (25%), Positives = 348/775 (44%), Gaps = 65/775 (8%)
Query: 443 IKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMP 502
++ P++ +++GPP ANG H+GHA + KD+ ++ M G+ A G+D HG+P
Sbjct: 31 VENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLP 90
Query: 503 IEIQIEKLYG-------KNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTM 555
+E+++EK G + R + ++ + R+ + +++Y T+
Sbjct: 91 VELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATL 150
Query: 556 DFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE--YKKKYDFSIYVGFS 613
+ + + +F +G +Y K V +C C + L+ E+ YK+ D S+YV F
Sbjct: 151 EPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVYVRFP 210
Query: 614 FSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLL 673
EP K L K ++IWT+TPWT+P N A VHPE+ YA + ++ L
Sbjct: 211 LKEP---------KKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDE---AL 258
Query: 674 ILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVD 733
IL L + L + ++ G L + + P + + L DY++ +
Sbjct: 259 ILEEGLGRKLLGE---GTQVLKTFPGKALEGLPYTPPY---PQALEKGYFVVLADYVSQE 312
Query: 734 SGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLIC 793
GTGIVH APA+G ED + + ++ V ++G + F G+ +A++ I
Sbjct: 313 DGTGIVHQAPAFGAEDLETARVYGL---PLLKTVDEEGKL--LVEPFKGLYFREANRAIL 367
Query: 794 SYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAI 853
L+ LF E + HSY HCWR TP++Y T WFI ++ I
Sbjct: 368 RDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLF--------KDELIRNN 419
Query: 854 NKIKFFPSWGKD-RLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIA 912
+I + P K+ R + N DW +SR R+WG P+ ++ + GK E I
Sbjct: 420 QEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKE-----EAIGSFQ 474
Query: 913 KKIELNGIEIWQNLDI-KEFLGDDAV-------NYKKSNDTLDVWFDSGITHQTVIRGSH 964
+ + + D + ++ D ++ +DVW+DSG +
Sbjct: 475 ELKARATKPLPEPFDPHRPYV-DQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPF 533
Query: 965 KKQ----LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMS 1020
+ + FPAD EG DQ RGWF+S ++L S +K ++ HG ++D KG+KMS
Sbjct: 534 EHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMS 593
Query: 1021 KSKGNIIKPQKLCNLFGAEILRLWV-ASTDYSKDLSISNEILNRVV-ETYRRIRNTLRFL 1078
KSKGN++ P + FGA+ LR ++ S D ++ V + + + N F
Sbjct: 594 KSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFF 653
Query: 1079 L--ANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCS 1136
+ AN + N E+D++ + + +L + + Y+ L+ +
Sbjct: 654 VTYANLDRPDLK-NPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVV 712
Query: 1137 EDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAW 1191
EDL +Y+ + R + +++ R +A +++ + L +P F +E W
Sbjct: 713 EDLSQWYVRRNRRRFW-KNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLW 766
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics
initiativ structural genomics, ligase-RNA complex; 3.21A
{Pyrococcus horikoshii}
Length = 967
Score = 490 bits (1262), Expect = e-149
Identities = 138/899 (15%), Positives = 297/899 (33%), Gaps = 124/899 (13%)
Query: 1572 LSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVK 1631
E W K+W E KI+ + KF + PY +G +H+GHA + D+I +
Sbjct: 6 FKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIAR 65
Query: 1632 FYNMDGFDAQYVPGYDCHGMPIEIQIEKL--------------YGKNLSPIEIQNKARAL 1677
F M G++ + + G PI E++ Y + +
Sbjct: 66 FKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINI 125
Query: 1678 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANE--LRAFGIIFKKGYVYHGLKPVNW 1735
++ K F+R G +W + T ++ F + +KGY+ G V W
Sbjct: 126 VKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRW 185
Query: 1736 CFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWT 1795
+ L + ++ + Y+ F E + I Y+ T P T
Sbjct: 186 DPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVI-----------YLPAATLRPET 234
Query: 1796 IPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKI 1855
+ + V+P Y ++ + L + +I KG KL
Sbjct: 235 VYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGK 294
Query: 1856 NFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDF-----LIFKKQNMKD 1910
+P+S ++ I +++ D+ TG+V S PA+ D L + + ++
Sbjct: 295 YVRNPVSGDEV------IILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEK 348
Query: 1911 SDIINPVMDDGNFISTLPL----------------------------------------- 1929
DI ++++ +IS + L
Sbjct: 349 YDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKG 408
Query: 1930 ------FGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFIN 1983
+ G + + + I + + + F + +I QWFI+
Sbjct: 409 IFKVPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFID 468
Query: 1984 MDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFI 2043
+E A A+ ++K P + + +++I +R+ G P+ +
Sbjct: 469 YGN------PEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDP 522
Query: 2044 HKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNY-----KKSNDTLDV 2098
L T+ + + +N + LD E L + +Y + ++
Sbjct: 523 EWVIESLSDSTIYMAYYTISRH-INKLRQEGKLDP-EKLTPEFFDYIFLEEFSEDKEKEL 580
Query: 2099 WFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH 2158
+GI + + + + +P D G D + + + + + +
Sbjct: 581 EKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAV 640
Query: 2159 GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVET 2217
+G+KMSKSKGN++ GA+++RL++ S ++ D + + ++ +
Sbjct: 641 NGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQ 700
Query: 2218 YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMI 2277
R + N + +ID++ + + KE + +
Sbjct: 701 IERFYELISQFAEYEVKGNVELK--------DIDRWMLHRLNKAIKETTNALEEFRTRTA 752
Query: 2278 VSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTS 2337
V FY + R Y + + + + + +RL++P
Sbjct: 753 VQWA----------FYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHIC 802
Query: 2338 EEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIR 2396
EE W + + + + + ++ + + ++ + + + +E +
Sbjct: 803 EELWEKLGGE-------GFVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIKEIIEVAK 854
Score = 468 bits (1206), Expect = e-141
Identities = 131/873 (15%), Positives = 287/873 (32%), Gaps = 124/873 (14%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
KF + PY +G +H+GHA + D+I +F M G++ + + G PI
Sbjct: 32 KEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIA 91
Query: 508 EKL--------------YGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYK 553
E++ Y + + ++ K F+R G +W +
Sbjct: 92 ERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFY 151
Query: 554 TMDFLNEANE--LRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVG 611
T ++ F + +KGY+ G V W + L + ++ + Y+
Sbjct: 152 TTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYII 211
Query: 612 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPL 671
F E + I Y+ T P T+ + V+P Y ++
Sbjct: 212 IKFELRENGEVI-----------YLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKE 260
Query: 672 LLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYIT 731
+ L + +I KG KL +P+S ++ I +++
Sbjct: 261 ETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEV------IILPAEFVD 314
Query: 732 VDSGTGIVHSAPAYGIEDF-----LIFKKQNMKDSDIINPVMDDGNFISTLPL------- 779
D+ TG+V S PA+ D L + + ++ DI ++++ +IS + L
Sbjct: 315 PDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFP 374
Query: 780 ----------------------------------------FGGMSIWKASKLICSYLKKS 799
+ G + + + I + +
Sbjct: 375 AVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEMLEK 434
Query: 800 KTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFF 859
+ F + +I QWFI+ +E A A+ ++K
Sbjct: 435 GIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGN------PEWKEKARKALERMKIL 488
Query: 860 PSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 919
P + + +++I +R+ G P+ + L T+ + + +N
Sbjct: 489 PETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRH-INK 547
Query: 920 IEIWQNLDIKEFLGDDAVNY-----KKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADL 974
+ LD E L + +Y + ++ +GI + + + + +P D
Sbjct: 548 LRQEGKLDP-EKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDW 606
Query: 975 YLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN 1034
G D + + + + + + +G+KMSKSKGN++
Sbjct: 607 RCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIE 666
Query: 1035 LFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIK 1093
GA+++RL++ S ++ D + + ++ + R + N +
Sbjct: 667 ENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELK--- 723
Query: 1094 ISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYT 1153
+ID++ + + KE + + V FY + R Y
Sbjct: 724 -----DIDRWMLHRLNKAIKETTNALEEFRTRTAVQWA----------FYSIMNDLRWYL 768
Query: 1154 TKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHY 1213
+ + + + + +RL++P EE W + +
Sbjct: 769 RRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGGE-------GFVSLAKWP 821
Query: 1214 KLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIR 1246
+ + + ++ + + ++ + + + +E +
Sbjct: 822 EPVEEWWNETIEAEEEFIRSVMEDIKEIIEVAK 854
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid,
aminoacylation, trnaLeu, structural genomics; 2.05A
{Pyrococcus horikoshii}
Length = 810
Score = 457 bits (1176), Expect = e-139
Identities = 136/845 (16%), Positives = 279/845 (33%), Gaps = 117/845 (13%)
Query: 1572 LSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVK 1631
E W K+W E KI+ + KF + PY +G +H+GHA + D+I +
Sbjct: 6 FKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIAR 65
Query: 1632 FYNMDGFDAQYVPGYDCHGMPIEIQIEKL--------------YGKNLSPIEIQNKARAL 1677
F M G++ + + G PI E++ Y + +
Sbjct: 66 FKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINI 125
Query: 1678 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNE--ANELRAFGIIFKKGYVYHGLKPVNW 1735
++ K F+R G +W + T F + +KGY+ G V W
Sbjct: 126 VKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRW 185
Query: 1736 CFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWT 1795
+ L + ++ + Y+ F E + I Y+ T P T
Sbjct: 186 DPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVI-----------YLPAATLRPET 234
Query: 1796 IPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKI 1855
+ + V+P Y ++ + L + +I KG KL
Sbjct: 235 VYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGK 294
Query: 1856 NFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDF-----LIFKKQNMKD 1910
+P+S ++ I +++ D+ TG+V S PA+ D L + + ++
Sbjct: 295 YVRNPVSGDEV------IILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEK 348
Query: 1911 SDIINPVMDDGNFISTLPL----------------------------------------- 1929
DI ++++ +IS + L
Sbjct: 349 YDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKG 408
Query: 1930 ------FGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFIN 1983
+ G + + + I + + + F + +I QWFI+
Sbjct: 409 IFKVPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFID 468
Query: 1984 MDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFI 2043
+E A A+ ++K P + + +++I +R+ G P+ +
Sbjct: 469 YG------NPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDP 522
Query: 2044 HKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNY-----KKSNDTLDV 2098
L T+ + + +N + LD ++ L + +Y + ++
Sbjct: 523 EWVIESLSDSTIYMAYYTISRH-INKLRQEGKLDPEK-LTPEFFDYIFLEEFSEDKEKEL 580
Query: 2099 WFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH 2158
+GI + + + + +P D G D + + + + + +
Sbjct: 581 EKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAV 640
Query: 2159 GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVET 2217
+G+KMSKSKGN++ GA+++RL++ S ++ D + + ++ +
Sbjct: 641 NGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQ 700
Query: 2218 YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMI 2277
R + N + +ID++ + + KE + +
Sbjct: 701 IERFYELISQFAEYEVKGNVELK--------DIDRWMLHRLNKAIKETTNALEEFRTRTA 752
Query: 2278 VSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTS 2337
V FY + R Y + + + + + +RL++P
Sbjct: 753 VQWA----------FYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHIC 802
Query: 2338 EEAWS 2342
EE W
Sbjct: 803 EELWE 807
Score = 435 bits (1121), Expect = e-132
Identities = 129/819 (15%), Positives = 269/819 (32%), Gaps = 117/819 (14%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
KF + PY +G +H+GHA + D+I +F M G++ + + G PI
Sbjct: 32 KEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIA 91
Query: 508 EKL--------------YGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYK 553
E++ Y + + ++ K F+R G +W +
Sbjct: 92 ERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFY 151
Query: 554 TMDFLNE--ANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVG 611
T F + +KGY+ G V W + L + ++ + Y+
Sbjct: 152 TTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYII 211
Query: 612 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPL 671
F E + I Y+ T P T+ + V+P Y ++
Sbjct: 212 IKFELRENGEVI-----------YLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKE 260
Query: 672 LLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYIT 731
+ L + +I KG KL +P+S ++ I +++
Sbjct: 261 ETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEV------IILPAEFVD 314
Query: 732 VDSGTGIVHSAPAYGIEDF-----LIFKKQNMKDSDIINPVMDDGNFISTLPL------- 779
D+ TG+V S PA+ D L + + ++ DI ++++ +IS + L
Sbjct: 315 PDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFP 374
Query: 780 ----------------------------------------FGGMSIWKASKLICSYLKKS 799
+ G + + + I + +
Sbjct: 375 AVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEMLEK 434
Query: 800 KTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFF 859
+ F + +I QWFI+ +E A A+ ++K
Sbjct: 435 GIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGN------PEWKEKARKALERMKIL 488
Query: 860 PSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 919
P + + +++I +R+ G P+ + L T+ + + +N
Sbjct: 489 PETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRH-INK 547
Query: 920 IEIWQNLDIKEFLGDDAVNY-----KKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADL 974
+ LD ++ L + +Y + ++ +GI + + + + +P D
Sbjct: 548 LRQEGKLDPEK-LTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDW 606
Query: 975 YLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN 1034
G D + + + + + + +G+KMSKSKGN++
Sbjct: 607 RCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIE 666
Query: 1035 LFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIK 1093
GA+++RL++ S ++ D + + ++ + R + N +
Sbjct: 667 ENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELK--- 723
Query: 1094 ISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYT 1153
+ID++ + + KE + + V FY + R Y
Sbjct: 724 -----DIDRWMLHRLNKAIKETTNALEEFRTRTAVQWA----------FYSIMNDLRWYL 768
Query: 1154 TKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWS 1192
+ + + + + +RL++P EE W
Sbjct: 769 RRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWE 807
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW
YORK SGX research CEN structural genomics, nysgxrc; HET:
MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2
c.116.1.5 PDB: 1nxz_A
Length = 257
Score = 269 bits (690), Expect = 6e-82
Identities = 83/246 (33%), Positives = 132/246 (53%), Gaps = 3/246 (1%)
Query: 200 INIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISI- 257
+++++ R Y+PI YL ++ NH+ VLR+ + LF+G Y AK+I
Sbjct: 1 MSLRIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESN 60
Query: 258 KKKILIQIISFLFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQ 317
KK + ++I+ + E I L Q + + + I+KSVELGV +I P+ + RC ++
Sbjct: 61 KKSVKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVK 120
Query: 318 LNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKK 377
L+ ER+ KK +W+ I I+A EQ GRNI+P + P + +W ++ L PR
Sbjct: 121 LDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYS 180
Query: 378 LSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 437
+ V LLIG EGG + +E + G + LGKR+LRTETASL A++ L
Sbjct: 181 IKT-LPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQ 239
Query: 438 GVWGEI 443
+G++
Sbjct: 240 ICFGDL 245
Score = 190 bits (484), Expect = 3e-54
Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
Q + + + I+KSVELGV +I P+ + RC ++L+ ER+ KK +W+ I I+A EQ
Sbjct: 85 GQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQC 144
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFT 1533
GRNI+P + P + +W ++ L PR + V LLIG EGG +
Sbjct: 145 GRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT-LPTIPAGGVRLLIGSEGGLS 203
Query: 1534 EKEENLAYECGVIILSLGKRILRTETASLVALAILNGEL 1572
+E + G + LGKR+LRTETASL A++ L
Sbjct: 204 AQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQICF 242
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function;
2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Length = 268
Score = 251 bits (643), Expect = 1e-75
Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 12/253 (4%)
Query: 204 MLRFY---YPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISI-K 258
+ R++ + V+H+ NV+R+ + II + G E +L S+ K
Sbjct: 3 LQRYFIELTKQQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSK 62
Query: 259 KKILIQIISFLFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQL 318
K+ +I + ELP + + LP+ K + II+K ELG P R +++L
Sbjct: 63 DKVSCLVIEWTNENRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKL 122
Query: 319 NNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISKISCARILL-------S 371
++++ KKR RW I A EQS RN +P + F L + ++
Sbjct: 123 DDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQ 182
Query: 372 PRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLV 431
+ ++ + ++ GPEGG TE E E + LG RILRTETA L
Sbjct: 183 GEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLY 242
Query: 432 ALAILNGVWGEIK 444
AL+ ++ ++
Sbjct: 243 ALSAISYQTELLR 255
Score = 182 bits (465), Expect = 1e-51
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
LP+ K + II+K ELG P R +++L++++ KKR RW I A EQS
Sbjct: 86 ASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQS 145
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILL-------SPRGRKKLSCWANNQSPQEVELLI 1526
RN +P + F L + ++ + ++ + ++
Sbjct: 146 YRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVF 205
Query: 1527 GPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGEL 1572
GPEGG TE E E + LG RILRTETA L AL+ ++ +
Sbjct: 206 GPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAISYQT 251
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
transferase; 2.00A {Thermus thermophilus HB8} SCOP:
b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Length = 228
Score = 240 bits (616), Expect = 2e-72
Identities = 62/233 (26%), Positives = 104/233 (44%), Gaps = 10/233 (4%)
Query: 210 PIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKKILIQIISF 268
F G LP HL VLR + + +F+G E +A+++ + + +++
Sbjct: 4 HRAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDG-EREALAEVVDLGPPLRYRVLEE 62
Query: 269 LFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRI 328
E E+ + L AL + K ++ + ELG IQP++T + + E K
Sbjct: 63 RRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGE---GKLR 119
Query: 329 RWKNIIISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQ 388
R + + + A +QSGR ++P + P I ++ ++ +
Sbjct: 120 RLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVA---QGLVAHVGATARVR--EVLDPEK 174
Query: 389 EVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGVWG 441
+ L +GPEGGF E+E L G +SLG+RILR ETA+L LA+ G
Sbjct: 175 PLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEG 227
Score = 176 bits (450), Expect = 4e-50
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 8/159 (5%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
AL + K ++ + ELG IQP++T + + E K R + + + A +QS
Sbjct: 76 YVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGE---GKLRRLRAVALEAAKQS 132
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFT 1533
GR ++P + P I ++ ++ + + L +GPEGGF
Sbjct: 133 GRVVVPEVLPPIPLKAVPQVA---QGLVAHVGATARVR--EVLDPEKPLALAVGPEGGFA 187
Query: 1534 EKEENLAYECGVIILSLGKRILRTETASLVALAILNGEL 1572
E+E L G +SLG+RILR ETA+L LA+
Sbjct: 188 EEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGE 226
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural
genomics, joint center for structural genomics, JCSG;
2.12A {Thermotoga maritima}
Length = 234
Score = 234 bits (600), Expect = 3e-70
Identities = 58/245 (23%), Positives = 104/245 (42%), Gaps = 20/245 (8%)
Query: 200 INIKMLRFYYPIPFIIGQYLYLPDNIVNHLNVLRVKYKNTIILFNGFGGEYIAKLISI-K 258
+ M +Y + + +H+ V+R+K + I +G G Y L S+ K
Sbjct: 9 HHHHMPHLFYGTA--QNGEVIFDEREAHHMRVVRLKEGDVIEATDGNGFSYTCILKSLKK 66
Query: 259 KKILIQIISFLFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQL 318
K +I+ +E E +++V + + +IEK VELGV I R ++
Sbjct: 67 KTAAAKIVKVEEKEKEPTEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEI 126
Query: 319 NNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKL 378
+ + + K ++ A +Q R + P ++ I L + L
Sbjct: 127 SLD-------KAKIVVREAAKQCKRYLFPKVSFLEKLEFSG------NVITLDLDASQNL 173
Query: 379 SCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNG 438
+ + +++GPEGGF+EKE L I+SLGK+ILR ETA+++ + +
Sbjct: 174 ---LDANLEGSITVVVGPEGGFSEKERELL-RSSTTIVSLGKKILRFETAAILTVGYIAL 229
Query: 439 VWGEI 443
+I
Sbjct: 230 KKQKI 234
Score = 159 bits (405), Expect = 6e-44
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 17/159 (10%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
+ + + +IEK VELGV I R +++ + + K ++ A +Q
Sbjct: 90 VVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEISLD-------KAKIVVREAAKQC 142
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFT 1533
R + P ++ I L + L + + +++GPEGGF+
Sbjct: 143 KRYLFPKVSFLEKLEFSG------NVITLDLDASQNL---LDANLEGSITVVVGPEGGFS 193
Query: 1534 EKEENLAYECGVIILSLGKRILRTETASLVALAILNGEL 1572
EKE L I+SLGK+ILR ETA+++ + + +
Sbjct: 194 EKERELL-RSSTTIVSLGKKILRFETAAILTVGYIALKK 231
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown
function, PSI-2, protein structure initiative; HET: MSE
ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Length = 257
Score = 235 bits (601), Expect = 4e-70
Identities = 66/253 (26%), Positives = 112/253 (44%), Gaps = 20/253 (7%)
Query: 200 INIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISI- 257
+++ + FY P I Q LPD+ H+ VLR++ + + L +G G + A + +
Sbjct: 1 MSLSLPLFYAPD---IEQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETAD 57
Query: 258 KKKILIQIISFLFREIELPYTITLVQALP-ENRKFDLIIEKSVELGVKIIQPIITNRCII 316
+K + + + IT+ A ++ + + ++EK VE+GV + I +
Sbjct: 58 RKSCYVSVCGQESWQKPWRDRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHS-- 115
Query: 317 QLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWL-ISKISCARILLSPRGR 375
ER K R + I ISA +QS + PV+ NI + + + R++
Sbjct: 116 ----ERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIADTPKAAVRLIAYVDEA 171
Query: 376 KKLSCWANNQ-------SPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETA 428
+ Q+V +LIGPEG F+ E A G +SLG+ LRTETA
Sbjct: 172 VRAEITQGRGYPSDFYHVGQDVLILIGPEGDFSPSEVESALLAGFAPVSLGESRLRTETA 231
Query: 429 SLVALAILNGVWG 441
LVA ++ +
Sbjct: 232 GLVACQWIHTLQA 244
Score = 164 bits (418), Expect = 2e-45
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 1415 QALP-ENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
A ++ + + ++EK VE+GV + I + ER K R + I ISA +QS
Sbjct: 83 IAPTKQSERMEWMLEKLVEIGVDEVVFIESEHS------ERRRIKAERLERIAISAMKQS 136
Query: 1474 GRNILPVLAPNIYFNNWL-ISKISCARILLSPRGRKKLSCWANNQ-------SPQEVELL 1525
+ PV+ NI + + + R++ + Q+V +L
Sbjct: 137 LKASFPVIRVNIPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLIL 196
Query: 1526 IGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 1569
IGPEG F+ E A G +SLG+ LRTETA LVA ++
Sbjct: 197 IGPEGDFSPSEVESALLAGFAPVSLGESRLRTETAGLVACQWIH 240
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex,
RNA stem-loop, hydrol complex; HET: P5P; 2.00A
{Staphylococcus aureus subsp} SCOP: c.97.1.2
Length = 159
Score = 227 bits (582), Expect = 7e-69
Identities = 62/145 (42%), Positives = 88/145 (60%), Gaps = 3/145 (2%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
AK A GEVP+GA++ K++ VI+ +N + T PTAHAE IA+ A+K+L ++R
Sbjct: 18 AKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLE-G 76
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
+YVTLEPC MCAG I+ R+ ++YG K G GS++NL Q+ NH I+ GV+
Sbjct: 77 CTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVL 136
Query: 177 QKQCEKLLKSFFIKRRNFVKNKSIN 201
++ C LL +FF R KS N
Sbjct: 137 KEACSTLLTTFFKNLRA--NKKSTN 159
Score = 121 bits (307), Expect = 8e-32
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
EPC MCAG I+ R+ ++YG K G GS++NL Q+ NH I+ GV+++ C L
Sbjct: 84 EPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTL 143
Query: 1399 LKSFFIKRR 1407
L +FF R
Sbjct: 144 LTTFFKNLR 152
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer,
zinc, metalloenzyme, structural genomics, PSI, protein
structure initiative; 2.03A {Escherichia coli} SCOP:
c.97.1.2 PDB: 3ocq_A
Length = 168
Score = 226 bits (579), Expect = 2e-68
Identities = 68/136 (50%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
AK A EVPVGAVLV NN VI G+N+ I R+DPTAHAEI+ALR ++ NYR +
Sbjct: 20 AKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLI-D 78
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
+YVTLEPC MCAGA+IH R+G +++G KTGA GS++++ +NH +T G++
Sbjct: 79 ATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGIL 138
Query: 177 QKQCEKLLKSFFIKRR 192
+C LL FF RR
Sbjct: 139 ADECAALLSDFFRMRR 154
Score = 121 bits (307), Expect = 1e-31
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
EPC MCAGA+IH R+G +++G KTGA GS++++ +NH +T G++ +C L
Sbjct: 86 EPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAAL 145
Query: 1399 LKSFFIKRRNFVKNKIQA 1416
L FF RR +K + +A
Sbjct: 146 LSDFFRMRRQEIKAQKKA 163
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A
{Streptococcus pyogenes serotype M6}
Length = 179
Score = 225 bits (576), Expect = 8e-68
Identities = 43/136 (31%), Positives = 79/136 (58%), Gaps = 1/136 (0%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
++ +L E+P+G V+VK+ +I G+N + N HAE++A+ A+ N+R +
Sbjct: 27 SEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLL-D 85
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
++VT+EPC MC+GAI R+ +IYG + K G S+ + +++LNH + G++
Sbjct: 86 TTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLL 145
Query: 177 QKQCEKLLKSFFIKRR 192
C ++++FF + R
Sbjct: 146 AADCANIMQTFFRQGR 161
Score = 122 bits (309), Expect = 8e-32
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
EPC MC+GAI R+ +IYG + K G S+ + +++LNH + G++ C +
Sbjct: 93 EPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANI 152
Query: 1399 LKSFFIKRRNFVKNKIQALPENRKFD 1424
+++FF + R + KI + D
Sbjct: 153 MQTFFRQGRE--RKKIAKHLIKEQSD 176
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification,
PUA domain, M3U, SAM, structural genomics, NPPSFA; HET:
SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Length = 229
Score = 227 bits (581), Expect = 8e-68
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 11/236 (4%)
Query: 204 MLRFYYPIPFIIGQYLYLPDNIVNHLNVLRVKYKNTIILFNGFGGEYIAKLISI-KKKIL 262
M FY G L L + V H V R++ + + G Y+ K+ K++I
Sbjct: 1 MHVFY--SEERRGNLLILREGEVKHFRVRRIEKDEEFGVIHE-GKIYVCKVRREDKREIS 57
Query: 263 IQIISFLFREIELPYTITLVQALPENRK-FDLIIEKSVELGVKIIQPIITNRCIIQLNNE 321
+I+ L P ITL Q++ + K D I+ ++ ELGV PII+ R + E
Sbjct: 58 CEIVEEL-ETKLPPKDITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKE--E 114
Query: 322 RIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCW 381
I+KK +WK I+I A +QS R I + + ++ + + IL + K
Sbjct: 115 AILKKTEKWKRIVIEAMKQSRRPIPMEIKKPVRLSDLI-PESEENIILDNFYEGVKPK-- 171
Query: 382 ANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 437
N + +++GPEGGF+++E + E G + L LRTETA + ++IL
Sbjct: 172 DVNLEAKTYSVVVGPEGGFSKRESQILREKGFKSVLLEPYTLRTETAVVSIVSILM 227
Score = 166 bits (423), Expect = 2e-46
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 6/157 (3%)
Query: 1414 IQALPENRK-FDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQ 1472
Q++ + K D I+ ++ ELGV PII+ R + E I+KK +WK I+I A +Q
Sbjct: 76 YQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKE--EAILKKTEKWKRIVIEAMKQ 133
Query: 1473 SGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGF 1532
S R I + + ++ + + IL + K N + +++GPEGGF
Sbjct: 134 SRRPIPMEIKKPVRLSDLI-PESEENIILDNFYEGVKPK--DVNLEAKTYSVVVGPEGGF 190
Query: 1533 TEKEENLAYECGVIILSLGKRILRTETASLVALAILN 1569
+++E + E G + L LRTETA + ++IL
Sbjct: 191 SKRESQILREKGFKSVLLEPYTLRTETAVVSIVSILM 227
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP:
c.97.1.2
Length = 171
Score = 220 bits (564), Expect = 2e-66
Identities = 53/137 (38%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
AK A GEVPVGA++VK +IS +N DPTAHAE++A++ A + LN
Sbjct: 34 AKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLE-G 92
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
++YVTLEPC MC+ A++ R+ ++I+ K G S+ N+ E LNH +
Sbjct: 93 CELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPL 152
Query: 177 QKQCEKLLKSFFIKRRN 193
+ + +LL FF K RN
Sbjct: 153 E-EASELLSEFFKKLRN 168
Score = 118 bits (297), Expect = 3e-30
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
EPC MC+ A++ R+ ++I+ K G S+ N+ E LNH ++ + +L
Sbjct: 100 EPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPLE-EASEL 158
Query: 1399 LKSFFIKRRNFVKNKI 1414
L FF K R N I
Sbjct: 159 LSEFFKKLR---NNII 171
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding
protein; 1.60A {Agrobacterium tumefaciens} SCOP:
c.97.1.2
Length = 144
Score = 215 bits (550), Expect = 9e-65
Identities = 50/131 (38%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
A+ A EVP+GAVLV + VI+ N+ ND TAHAEI +RMA + L R
Sbjct: 15 ARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLP-G 73
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
+YVTLEPC MCA AI R+ + YG K GA S + F + +H + G+
Sbjct: 74 ADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLA 133
Query: 177 QKQCEKLLKSF 187
+ + ++L+ F
Sbjct: 134 ESESAEILRQF 144
Score = 111 bits (281), Expect = 2e-28
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
EPC MCA AI R+ + YG K GA S + F + +H + G+ + + ++
Sbjct: 81 EPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLAESESAEI 140
Query: 1399 LKSF 1402
L+ F
Sbjct: 141 LRQF 144
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA
processing, hydrolase, structural genomics, structural
consortium, SGC; 2.80A {Homo sapiens}
Length = 189
Score = 210 bits (537), Expect = 2e-62
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMA------SKLLNN 110
AK AL EVPVG ++V NN V+ G N+ + T HAE++A+ S +
Sbjct: 37 AKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPS 96
Query: 111 YRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLN--HH 168
F + +YVT+EPC MCA A+ +++ ++YG + + G CGS++N+ N
Sbjct: 97 EVFE-HTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRP 155
Query: 169 TILTGGVMQKQCEKLLKSFFIKRRNFVKNK 198
G ++ ++LK+F+ +
Sbjct: 156 FQCIPGYRAEEAVEMLKTFYKQENPNAPKS 185
Score = 114 bits (287), Expect = 1e-28
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLN--HHTILTGGVMQKQCE 1396
EPC MCA A+ +++ ++YG + + G CGS++N+ N G ++
Sbjct: 109 EPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGYRAEEAV 168
Query: 1397 KLLKSFFIKRRNFVKNK 1413
++LK+F+ +
Sbjct: 169 EMLKTFYKQENPNAPKS 185
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A*
1wk8_A* 1udz_A 1ue0_A
Length = 186
Score = 197 bits (503), Expect = 1e-57
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 23/205 (11%)
Query: 607 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIK 666
S+YV F +K K L K ++IWT+TPWT+P N A VHPE+ YA +
Sbjct: 5 SVYVRF------PLKE---PKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVG 55
Query: 667 NDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL 726
++ LIL L + L + ++ G L + + P + + L
Sbjct: 56 DE---ALILEEGLGRKLLGE---GTPVLKTFPGKALEGLPYTPPY---PQALEKGYFVVL 106
Query: 727 GDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIW 786
DY++ + GTGIVH APA+G ED + + ++ V ++G + F G+
Sbjct: 107 ADYVSQEDGTGIVHQAPAFGAEDLETARVYGL---PLLKTVDEEGKL--LVEPFKGLYFR 161
Query: 787 KASKLICSYLKKSKTLFNIEMFEHS 811
+A++ I L+ LF E + HS
Sbjct: 162 EANRAILRDLRGRGLLFKEESYLHS 186
Score = 197 bits (503), Expect = 1e-57
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 23/205 (11%)
Query: 1757 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIK 1816
S+YV F +K K L K ++IWT+TPWT+P N A VHPE+ YA +
Sbjct: 5 SVYVRF------PLKE---PKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVG 55
Query: 1817 NDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL 1876
++ LIL L + L + ++ G L + + P + + L
Sbjct: 56 DE---ALILEEGLGRKLLGE---GTPVLKTFPGKALEGLPYTPPY---PQALEKGYFVVL 106
Query: 1877 GDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIW 1936
DY++ + GTGIVH APA+G ED + + ++ V ++G + F G+
Sbjct: 107 ADYVSQEDGTGIVHQAPAFGAEDLETARVYGL---PLLKTVDEEGKL--LVEPFKGLYFR 161
Query: 1937 KASKLICSYLKKSKTLFNIEMFEHS 1961
+A++ I L+ LF E + HS
Sbjct: 162 EANRAILRDLRGRGLLFKEESYLHS 186
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding
region, structural genomics, PSI, protein structure
initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Length = 197
Score = 184 bits (468), Expect = 5e-53
Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 10/146 (6%)
Query: 57 AKLALIAGEVPVGAVLVK--NNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS 114
+ + A P A + + + L+I+ G N+ + AHAEI+AL +A L+ + S
Sbjct: 39 VRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLS 98
Query: 115 KNYK----IYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACG----SIINLFQEKKLN 166
+ + + EPC MC GA+I + ++ S A G +
Sbjct: 99 ADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEA 158
Query: 167 HHTILTGGVMQKQCEKLLKSFFIKRR 192
+T G+++ LL+ +
Sbjct: 159 RGITVTTGLLRDAACALLREYNACNG 184
Score = 95.3 bits (237), Expect = 6e-22
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACG----SIINLFQEKKLNHHTILTGGVMQKQ 1394
EPC MC GA+I + ++ S A G + +T G+++
Sbjct: 112 EPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDA 171
Query: 1395 CEKLLKSFFIKRR 1407
LL+ +
Sbjct: 172 ACALLREYNACNG 184
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A
{Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A
1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Length = 161
Score = 182 bits (463), Expect = 8e-53
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 13/168 (7%)
Query: 35 SISLKNMLIETDSPYLSPIPHRAKLALIAGEVPVGAVLV--KNNLVISYGYNQQITRNDP 92
S+ M + D + A L G VP+G L+ K+ V+ G+N + +
Sbjct: 3 SMVTGGMASKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSA 62
Query: 93 TAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGA 152
T H EI L +L + K+ +Y TL PC MC GAII + + G
Sbjct: 63 TLHGEISTLENCGRL-EGKVY-KDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKSK 120
Query: 153 CGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRNFVKNKSI 200
EK L V ++C+K++K F +R + I
Sbjct: 121 G--------EKYLQTRGHEVVVVDDERCKKIMKQFIDERPQ-DWFEDI 159
Score = 93.5 bits (233), Expect = 8e-22
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
PC MC GAII + + G EK L V ++C+K+
Sbjct: 92 SPCDMCTGAIIMYGIPRCVVGENVNFKSKG--------EKYLQTRGHEVVVVDDERCKKI 143
Query: 1399 LKSFFIKRR 1407
+K F +R
Sbjct: 144 MKQFIDERP 152
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily,
substrate specificity, structural plasticity, hydrolase;
1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Length = 164
Score = 156 bits (396), Expect = 9e-44
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 7/141 (4%)
Query: 57 AKLALIAG-EVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSK 115
A + AG P GAV+VK+ +I+ G N T NDPTAHAE+ A+R A K+L Y+
Sbjct: 22 ACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLD- 80
Query: 116 NYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACG----SIINLFQEKKLNHHTIL 171
+ +Y + EPC MC GAI R + Y G I +
Sbjct: 81 DCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPF 140
Query: 172 TGGVMQKQCEKLLKSFFIKRR 192
+ +++
Sbjct: 141 YQV-TLTEHLSPFQAWRNFAN 160
Score = 67.4 bits (165), Expect = 9e-13
Identities = 12/73 (16%), Positives = 18/73 (24%), Gaps = 5/73 (6%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACG----SIINLFQEKKLNHHTILTGGVMQKQ 1394
EPC MC GAI R + Y G I + +
Sbjct: 89 EPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPFYQV-TLTE 147
Query: 1395 CEKLLKSFFIKRR 1407
+++
Sbjct: 148 HLSPFQAWRNFAN 160
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 154 bits (392), Expect = 6e-38
Identities = 130/566 (22%), Positives = 217/566 (38%), Gaps = 140/566 (24%)
Query: 1571 ELSKR------EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKI 1624
+L K EP W +KW + + +P F++ PP G +H+GHA++
Sbjct: 2 DLPKAYDPKSVEPKWAEKWAKNPFVANPKS---GKPPFVIFMPPPNVTGSLHMGHALDNS 58
Query: 1625 LKDIIVKFYNMDGFDAQYVPGYDCH-GMPIEIQIEKLYGKNLSPIEIQNKARA-LAYEK- 1681
L+D ++++ M GF+A ++PG D H G+ ++ +E+L + + K R L EK
Sbjct: 59 LQDALIRYKRMRGFEAVWLPGTD-HAGIATQVVVERL-------LLKEGKTRHDLGREKF 110
Query: 1682 ---------------IEQQKMDFMRLGILGEWDNSYKTMD-FLNEANELRAFGIIFKKGY 1725
++Q K RLG +W TMD + A AF + +G
Sbjct: 111 LERVWQWKEESGGTILKQLK----RLGASADWSREAFTMDEKRSRA-VRYAFSRYYHEGL 165
Query: 1726 VYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGY 1785
Y + VNWC C++ L++ E+E + ++ L+ G G+
Sbjct: 166 AYRAPRLVNWCPRCETTLSDLEVETE----------------PTPGKLYTLRYEVEGGGF 209
Query: 1786 IVIWTSTPWTIPANQALHVHPEFD--YALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNI 1843
I I T P T+ A+QA+ VHPE D Y ++
Sbjct: 210 IEIATVRPETVFADQAIAVHPE-DERYR------------------------------HL 238
Query: 1844 IGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIF 1903
+G K ++ PL+ + I PI + D GTG + PA+ D+ I
Sbjct: 239 LG--KRARI-------PLTEVWI------PILADPAVEKDFGTGALKVTPAHDPLDYEIG 283
Query: 1904 KKQNMKDSDIINPVMDDG--NFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHS 1961
++ +K +IN +G G+ ++A + +++ L E + +
Sbjct: 284 ERHGLKPVSVIN---LEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIA 340
Query: 1962 YMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFP-SWGKDRLK 2018
C R TPI Y QW++ M + L E + + I F P W K +
Sbjct: 341 LATCSRCGTPIEYAIFPQWWLRM--------RPLAEEVLKGLRRGDIAFVPERWKKVNMD 392
Query: 2019 SMILNRPDWTISRQRHWGVPIAFFIHKKSGKLH-PKTLELIELIAKKIELNGIEIWQNLD 2077
+ N DW ISRQ WG I + + ++ P+ +E + +
Sbjct: 393 WL-ENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKR--- 448
Query: 2078 IKEFLGDDAVNYKKSNDTLDVWFDSG 2103
D+ D D WF S
Sbjct: 449 ------DE--------DVFDTWFSSA 460
Score = 144 bits (366), Expect = 8e-35
Identities = 121/523 (23%), Positives = 201/523 (38%), Gaps = 131/523 (25%)
Query: 458 PPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCH-GMPIEIQIEKLYGKNLS 516
PP G +H+GHA++ L+D ++++ M GF+A ++PG D H G+ ++ +E+L
Sbjct: 42 PPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTD-HAGIATQVVVERL------ 94
Query: 517 PIEIQNKARA-LAYEK----------------IEQQKMDFMRLGILGEWDNSYKTMD-FL 558
+ + K R L EK ++Q K RLG +W TMD
Sbjct: 95 -LLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLK----RLGASADWSREAFTMDEKR 149
Query: 559 NEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPE 618
+ A AF + +G Y + VNWC C++ L++ E+E +
Sbjct: 150 SRA-VRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETE----------------P 192
Query: 619 KIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFD--YALVHIKNDPPLLLILA 676
++ L+ G G+I I T P T+ A+QA+ VHPE D Y
Sbjct: 193 TPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPE-DERYR--------------- 236
Query: 677 FNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGT 736
+++G K ++ PL+ + I PI + D GT
Sbjct: 237 ---------------HLLG--KRARI-------PLTEVWI------PILADPAVEKDFGT 266
Query: 737 GIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDG--NFISTLPLFGGMSIWKASKLICS 794
G + PA+ D+ I ++ +K +IN +G G+ ++A +
Sbjct: 267 GALKVTPAHDPLDYEIGERHGLKPVSVIN---LEGRMEGERVPEALRGLDRFEARRKAVE 323
Query: 795 YLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN 854
+++ L E + + C R TPI Y QW++ M + L E + +
Sbjct: 324 LFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRM--------RPLAEEVLKGLR 375
Query: 855 --KIKFFP-SWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLH-PKTLELIEL 910
I F P W K + + N DW ISRQ WG I + + ++ P+ +E
Sbjct: 376 RGDIAFVPERWKKVNMDWL-ENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLED 434
Query: 911 IAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSG 953
+ + D+ D D WF S
Sbjct: 435 PTSCEACGSPRLKR---------DE--------DVFDTWFSSA 460
Score = 89.2 bits (222), Expect = 1e-17
Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 20/206 (9%)
Query: 998 KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL-WVASTDYSKDLSI 1056
P+K +L HG V+D KG+KMSKSKGN+I P ++ +GA+ LR + +D+ +
Sbjct: 508 GERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRL 567
Query: 1057 SNEILNRVVETYRR----IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQ 1112
+E R + N RF+L + F + ++ D++ ++
Sbjct: 568 DLRW----LEMARNFANKLYNAARFVLLSREGFQAKEDTPTLA-----DRFMRSRLSRGV 618
Query: 1113 KEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHIN 1172
+EI + Y + ++ + +YL+ K L + ++ +
Sbjct: 619 EEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAGNAH------TLRTLEEVL 672
Query: 1173 QSLLRLISPILSFTSEEAWSIFSDKN 1198
LL+L+ P++ F + E + + K
Sbjct: 673 AVLLKLLHPMMPFLTSELYQALTGKE 698
Score = 89.2 bits (222), Expect = 1e-17
Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 20/206 (9%)
Query: 2148 KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL-WVASTDYSKDLSI 2206
P+K +L HG V+D KG+KMSKSKGN+I P ++ +GA+ LR + +D+ +
Sbjct: 508 GERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRL 567
Query: 2207 SNEILNRVVETYRR----IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQ 2262
+E R + N RF+L + F + ++ D++ ++
Sbjct: 568 DLRW----LEMARNFANKLYNAARFVLLSREGFQAKEDTPTLA-----DRFMRSRLSRGV 618
Query: 2263 KEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHIN 2322
+EI + Y + ++ + +YL+ K L + ++ +
Sbjct: 619 EEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAGNAH------TLRTLEEVL 672
Query: 2323 QSLLRLISPILSFTSEEAWSIFSDKN 2348
LL+L+ P++ F + E + + K
Sbjct: 673 AVLLKLLHPMMPFLTSELYQALTGKE 698
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain,
hydrolysis of MIS-charged trnas, benzoxaborole,
anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB:
2wfe_A*
Length = 261
Score = 130 bits (328), Expect = 2e-33
Identities = 37/263 (14%), Positives = 69/263 (26%), Gaps = 62/263 (23%)
Query: 609 YVGF-----SFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALV 663
YVG + + ++ K Y+V T P T+ V P+ DY +
Sbjct: 3 YVGIKIRLTDVAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVF 62
Query: 664 HIKNDPPLLL--ILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRL 721
N + N+ L + G L P + N+
Sbjct: 63 DAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYA-----VNKN 117
Query: 722 SPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFK-----------KQNMKDSDII--NPVM 768
+ + + GTG+V P+ +DF+ + +++ +DI+
Sbjct: 118 LRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTE 177
Query: 769 DDGNF-----------------------------------ISTLPLFGGMSIWKASKLIC 793
G+ + + G + A +
Sbjct: 178 KYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVK 237
Query: 794 SYLKKSKTLFNIEM--FEHSYMH 814
L F EH + H
Sbjct: 238 QDLIDEGLAFVYNEPELEHHHHH 260
Score = 130 bits (328), Expect = 2e-33
Identities = 37/263 (14%), Positives = 69/263 (26%), Gaps = 62/263 (23%)
Query: 1759 YVGF-----SFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALV 1813
YVG + + ++ K Y+V T P T+ V P+ DY +
Sbjct: 3 YVGIKIRLTDVAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVF 62
Query: 1814 HIKNDPPLLL--ILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRL 1871
N + N+ L + G L P + N+
Sbjct: 63 DAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYA-----VNKN 117
Query: 1872 SPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFK-----------KQNMKDSDII--NPVM 1918
+ + + GTG+V P+ +DF+ + +++ +DI+
Sbjct: 118 LRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTE 177
Query: 1919 DDGNF-----------------------------------ISTLPLFGGMSIWKASKLIC 1943
G+ + + G + A +
Sbjct: 178 KYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVK 237
Query: 1944 SYLKKSKTLFNIEM--FEHSYMH 1964
L F EH + H
Sbjct: 238 QDLIDEGLAFVYNEPELEHHHHH 260
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase,
phosphoprotein, editing domain, nucleotide-binding,
hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Length = 252
Score = 127 bits (319), Expect = 2e-32
Identities = 44/270 (16%), Positives = 80/270 (29%), Gaps = 38/270 (14%)
Query: 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKND 668
Y L L ++V T P T+ V P+ Y N
Sbjct: 7 YTLLKL--KVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNG 64
Query: 669 PPLLL--ILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL 726
+ A N+ K ++ G ++ + PL++ + Y +
Sbjct: 65 DIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVIY-----VLP 119
Query: 727 GDYITVDSGTGIVHSAPAYGIEDFLIF----KKQNMKDSDIINPVM---DDGNFISTLPL 779
I D GTG+V S P+ +D KKQ ++ I M + + +P
Sbjct: 120 MLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPG 179
Query: 780 FGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPK 839
FG +S A + +S ++ K I + + + +D
Sbjct: 180 FGNLS---AVTICDELKIQS---------QNDREKLAEAKEKIYLKGFYEGIMLVDG--- 224
Query: 840 NEKKSLRESAITAINK--IKFFPSWGKDRL 867
+ + + K K G +
Sbjct: 225 -----FKGQKVQDVKKTIQKKMIDAGDALI 249
Score = 127 bits (319), Expect = 2e-32
Identities = 44/270 (16%), Positives = 80/270 (29%), Gaps = 38/270 (14%)
Query: 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKND 1818
Y L L ++V T P T+ V P+ Y N
Sbjct: 7 YTLLKL--KVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNG 64
Query: 1819 PPLLL--ILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL 1876
+ A N+ K ++ G ++ + PL++ + Y +
Sbjct: 65 DIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVIY-----VLP 119
Query: 1877 GDYITVDSGTGIVHSAPAYGIEDFLIF----KKQNMKDSDIINPVM---DDGNFISTLPL 1929
I D GTG+V S P+ +D KKQ ++ I M + + +P
Sbjct: 120 MLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPG 179
Query: 1930 FGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPK 1989
FG +S A + +S ++ K I + + + +D
Sbjct: 180 FGNLS---AVTICDELKIQS---------QNDREKLAEAKEKIYLKGFYEGIMLVDG--- 224
Query: 1990 NEKKSLRESAITAINK--IKFFPSWGKDRL 2017
+ + + K K G +
Sbjct: 225 -----FKGQKVQDVKKTIQKKMIDAGDALI 249
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase;
2.60A {Giardia intestinalis}
Length = 311
Score = 120 bits (301), Expect = 2e-29
Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 17/205 (8%)
Query: 563 ELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKS 622
EL + + ++ S + I+ + Y S + + I
Sbjct: 17 ELINYTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFY--------SNPKNKAIFD 68
Query: 623 IFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLI--LAFNLV 680
+ + K Y++ T P T+ V P Y +I D +++ A N+
Sbjct: 69 QLWENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAAVNMA 128
Query: 681 --KSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGI 738
K + + I G L PLS + + I +D GTGI
Sbjct: 129 HQGLNNNKPFGELDFISEISGSDLLLATVRAPLSP-----YEQIFVLPLETIKMDKGTGI 183
Query: 739 VHSAPAYGIEDFLIFKKQNMKDSDI 763
V S P+ +D+ +K + I
Sbjct: 184 VTSVPSDAPDDYACYKDILENRNGI 208
Score = 120 bits (301), Expect = 2e-29
Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 17/205 (8%)
Query: 1713 ELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKS 1772
EL + + ++ S + I+ + Y S + + I
Sbjct: 17 ELINYTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFY--------SNPKNKAIFD 68
Query: 1773 IFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLI--LAFNLV 1830
+ + K Y++ T P T+ V P Y +I D +++ A N+
Sbjct: 69 QLWENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAAVNMA 128
Query: 1831 --KSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGI 1888
K + + I G L PLS + + I +D GTGI
Sbjct: 129 HQGLNNNKPFGELDFISEISGSDLLLATVRAPLSP-----YEQIFVLPLETIKMDKGTGI 183
Query: 1889 VHSAPAYGIEDFLIFKKQNMKDSDI 1913
V S P+ +D+ +K + I
Sbjct: 184 VTSVPSDAPDDYACYKDILENRNGI 208
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.80A {Thermotoga maritima} SCOP:
c.1.9.12
Length = 268
Score = 103 bits (259), Expect = 4e-24
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
+ A++ I+LGF + G VT+ ++ L++V+ + L+ +++ETD P+L P P R K
Sbjct: 169 DYEWAKKFIDLGFLLGIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFLPPQPFRGK 226
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center
for structural genomics, nysgxrc; 1.90A {Escherichia
coli} SCOP: c.1.9.12
Length = 265
Score = 102 bits (258), Expect = 5e-24
Identities = 30/58 (51%), Positives = 44/58 (75%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
+ A ++++LGFYISFSGIVTF+N++ L+ + L +L+ETDSPYL+P+PHR K
Sbjct: 160 DRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGK 217
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural
genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP:
c.1.9.12
Length = 259
Score = 99.5 bits (249), Expect = 8e-23
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHR---- 56
SL A ++LG+ I G +T+ + + V+ + L ++L+ETD+P + +
Sbjct: 162 SLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPN 221
Query: 57 --AKLALIAGEV 66
+ A + +
Sbjct: 222 RPEQAARVFAVL 233
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
structural GENO PSI, protein structure initiative; 2.20A
{Staphylococcus aureus subsp}
Length = 265
Score = 99.1 bits (248), Expect = 1e-22
Identities = 28/59 (47%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 1 SLDVAREII-ELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
S ++A + +L FYIS G VTFKN+K ++V +S++ +L+ETD+PYLSP P+R K
Sbjct: 158 SPEIADIVTNKLNFYISLGGPVTFKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGK 216
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Length = 287
Score = 89.9 bits (224), Expect = 3e-19
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1 SLDVAREIIELGFYISFSG-IVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
+ ++L +I +G I + L ++G+I +++E+D+PYL P R K
Sbjct: 163 EREALFAYLDLDLHIGITGWICDERRGTHLHPLVGNIPEGRLMLESDAPYLLPRSLRPK 221
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Length = 272
Score = 88.8 bits (221), Expect = 5e-19
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
VA E + G++ S + QK++ + L ++ +ETDSP L P +
Sbjct: 173 RPSVAMEGVRAGYFFSIPPSIIRSGQ--KQKLVKQLPLTSICLETDSPALG--PEKQV 226
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.1.9.12
Length = 264
Score = 84.5 bits (210), Expect = 1e-17
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1 SLDVAREIIELGFYISFSG-IVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
+ + + + G YI +G + + L++++ I + +LIETD+PYL P K
Sbjct: 161 TREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPK 219
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown
function, plasmid, PSI-2, protein structure initiative;
1.50A {Deinococcus radiodurans}
Length = 254
Score = 80.3 bits (199), Expect = 2e-16
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSP 52
S+ R I LG + S T ++ ++ S+ +L ETD P+L
Sbjct: 153 SVTELRRAISLGCWFSVGP--TMVRTQKGAALIRSMPRDRVLTETDGPFLEL 202
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 80.4 bits (199), Expect = 5e-16
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAKLA 60
+ + A +I+L YI F+G + +V+ SI + ++IETD+P+ A
Sbjct: 176 TKEAAAALIDLDLYIGFNGCSLKTEA--NLEVLKSIPSEKLMIETDAPWCGVKSTHAGSK 233
Query: 61 LIAGEVPVGAVLVKNNLVISYGYNQQITRNDP--TAH-AEIIA 100
I P + + RN+P EI++
Sbjct: 234 YIRTAFPTKKKWESGHCLKD--------RNEPCHIIQILEIMS 268
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 80.9 bits (200), Expect = 6e-16
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAKLA 60
+ + +I+ G+ I +G S L VM I ++ + IETD PY A
Sbjct: 204 TEEEMNQILNEGWDIGVTG--NSLQSIELLNVMKQIPIERLHIETDCPYCGIKKTSAGFK 261
Query: 61 LIAGEVPVGAVLVKNNLVISYGYNQQITRNDP--TAH-AEIIA 100
+ + VK Y Q+ RN+P A I++
Sbjct: 262 YLKEKDFG----VKVEKYQRNKYVQR--RNEPSNIIDIAIIMS 298
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 81.1 bits (199), Expect = 4e-15
Identities = 110/819 (13%), Positives = 212/819 (25%), Gaps = 304/819 (37%)
Query: 1381 NHHTILTGGVMQKQCEKLLKSFFIKRRNFVKNKIQALPENRKFDLIIEKSVELGVKIIQP 1440
+HH G Q Q + +L F FV N FD K V+ + +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVF---EDAFVDN----------FDC---KDVQ---DMPKS 44
Query: 1441 IITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNIL-----PVLAPNIYFNNWLISKI 1495
I++ I + + + ++ VL N Y +L+S I
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTL---RLFWTLLSKQEEMVQKFVEEVLRIN-Y--KFLMSPI 98
Query: 1496 SCARILLSPRGRKKLSC----WANNQS--------PQEVELLIGPEGGFTEKEENLAYEC 1543
+ S R + + +NQ Q L + L
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-------RQALLELRPAK 151
Query: 1544 GVII---LSLGKRILRTETASLVALAILNGELSKREPGWIKKWQEKKIYHQIRKASINRP 1600
V+I L GK + L+ ++ + I W + + N P
Sbjct: 152 NVLIDGVLGSGK-------TWVALDVCLSYKVQCKMDFKI-FW--------LNLKNCNSP 195
Query: 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 1660
+ +L ++L+ ++ + D + D H I+++I
Sbjct: 196 ETVL------------------EMLQKLLYQ------IDPNWTSRSD-HSSNIKLRIH-- 228
Query: 1661 YGKNLSPIEIQNKARALAYEKIEQQKMDFMR-LGILGEWDNSYKTMDFLNEANELRAFGI 1719
IQ + R L K + L +L N + A AF
Sbjct: 229 --------SIQAELRRLLKSK------PYENCLLVL---LN-------VQNAKAWNAFN- 263
Query: 1720 IFKKGYVYHGLKPVNWCFDCK-------SALAEAEIEYKKKYDFSIYVGFSFSEPEKIKS 1772
CK + + + + + + E KS
Sbjct: 264 -----------------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-KS 305
Query: 1773 IF------NLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILA 1826
+ ++LP + L +P
Sbjct: 306 LLLKYLDCRPQDLPR------------------EVLTTNP------------------RR 329
Query: 1827 FNLVKSCLKKFGFKGNIIGICKGIKLSKINFF-HPLSN-----IDINYNRLSPIYLGDYI 1880
+++ ++ L+ + + H + I+ + N L P
Sbjct: 330 LSIIAESIRDG--------------LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM- 374
Query: 1881 TVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASK 1940
+ + +F + I P L L W
Sbjct: 375 --------------F--DRLSVF----PPSAHI--P-------TILLSLI-----WFDVI 400
Query: 1941 -----LICSYLKKSKTLFNIEMFEHSY-MHCWRHKTPIIYRTTLQWFINMDKIPKNEKKS 1994
++ + L K +L + E + + IY K+ + +
Sbjct: 401 KSDVMVVVNKLHK-YSLVEKQPKESTISIP-------SIYLEL--------KVKLENEYA 444
Query: 1995 LRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFI--HKKSGKLHP 2052
L S + N K F S +I D +++ I H K+ +
Sbjct: 445 LHRSIVDHYNIPKTFDSDD------LIPPYLD------QYF----YSHIGHHLKNIEHPE 488
Query: 2053 KTLELIEL------IAKKIELNGIEIWQNLDIKEFLGDDAVNYKK---SNDTLDVWFDSG 2103
+ + + +KI + + I L YK ND +
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ-QLKFYKPYICDNDPKYERLVNA 547
Query: 2104 ITH------QTVIRGSHKK--QLIFPAD---LYLEGSDQ 2131
I + +I + ++ A+ ++ E Q
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 75.7 bits (185), Expect = 2e-13
Identities = 94/677 (13%), Positives = 185/677 (27%), Gaps = 229/677 (33%)
Query: 166 NHHTILTGGVMQKQCEKLLKSF---FIKR----------RNFVKNKSI-NI-----KMLR 206
+HH G Q Q + +L F F+ ++ + + I +I +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 207 FYYPIPFIIGQYLYLPDNIVNHL--NVLRVKYKNTIILFNGFGGEYIAKLISIKKKILIQ 264
+ L + +V VLR+ YK L + E S+ ++ I+
Sbjct: 64 TLR----LFWTLLSKQEEMVQKFVEEVLRINYK---FLMSPIKTEQRQP--SMMTRMYIE 114
Query: 265 IISFLFREIEL--PYTIT-------LVQALPENRKFDLIIE-------KSV--------- 299
L+ + ++ Y ++ L QAL E R ++ K+
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 300 ------ELGV---KIIQPIITNRCIIQLNN--------------------ERIIKKRIRW 330
+ + + + L RI +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 331 KNIIISATEQSGRNILPVLAPNIYFNNWLISK--ISCARILLSPRGRKKLSCWANNQSPQ 388
+ ++ + N L VL N+ N + +SC +ILL+ R K+++ + + +
Sbjct: 235 RRLL---KSKPYENCLLVLL-NVQ-NAKAWNAFNLSC-KILLTTRF-KQVTDFLSAATTT 287
Query: 389 EVELLIGPEGGFTEKEENLAYECGVIILSLGKRI--LRTETASLVALAILNGVWGEIKAS 446
+ L T +E +++ L R L E + + + + I+
Sbjct: 288 HIS-LDHHSMTLTP-DEVK----SLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDG 340
Query: 447 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQ 506
+ H L II N
Sbjct: 341 LATWDNWKHVN--------------CDKLTTIIESSLN---------------------- 364
Query: 507 IEKLYGKNLSPIEIQNKARALAY----EKIEQQKMDFMRLGILGEWDNS--YKTMDFLNE 560
L P E + L+ I L ++ W + M +
Sbjct: 365 -------VLEPAEYRKMFDRLSVFPPSAHIPTI-----LLSLI--WFDVIKSDVMVVV-- 408
Query: 561 ANELRAFGIIFKKG----YVYHGL-----------------------KPVNWCFDCKSAL 593
N+L + ++ K+ + P + D
Sbjct: 409 -NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 594 AE------------AEIEYKKKYD-FS-IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIW 639
IE+ ++ F +++ F F E +KI+
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-QKIRH----------------- 509
Query: 640 TSTPWTIPANQALHVHPEFDYALVHI-KNDPPLLLILAFNLVKSCLKKFGFK-GNIIGIC 697
ST W + L+ + + +I NDP + + + + F K +
Sbjct: 510 DSTAWNASGS-ILNTLQQLKFYKPYICDNDP------KYERLVNAILDFLPKIEENLICS 562
Query: 698 KGIKLSKINFFHPLSNI 714
K L +I I
Sbjct: 563 KYTDLLRIALMAEDEAI 579
Score = 68.0 bits (165), Expect = 4e-11
Identities = 100/788 (12%), Positives = 204/788 (25%), Gaps = 280/788 (35%)
Query: 266 ISFLFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIK 325
+ F E + Y ++ + + K V+ + + I++ I + +
Sbjct: 7 MDFETGEHQYQYK-DILSVFEDAFVDNFDC-KDVQ---DMPKSILSKEEIDHIIMSKDAV 61
Query: 326 KRIRWKNIIISATEQSGRNIL-----PVLAPNIYFNNWLISKISCARILLSPRGRKKLSC 380
+ ++ VL N Y +L+S I + S R +
Sbjct: 62 SGTL---RLFWTLLSKQEEMVQKFVEEVLRIN-Y--KFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 381 ----WANNQS--------PQEVELLIGPEGGFTEKEENLAYECGVII---LSLGKRILRT 425
+ +NQ Q L + L V+I L GK +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKL-------RQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 426 ETAS--LVALAILNGV-WGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVK 481
+ V + + W + + N P+ +L ++L+ ++ +
Sbjct: 169 DVCLSYKVQCKMDFKIFW--LNLKNCNSPETVL------------------EMLQKLLYQ 208
Query: 482 FYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMR 541
D + D H I+++I IQ + R L K +
Sbjct: 209 I------DPNWTSRSD-HSSNIKLRIH----------SIQAELRRLLKSK------PYEN 245
Query: 542 -LGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCK-------SAL 593
L +L N + A AF CK +
Sbjct: 246 CLLVL---LN-------VQNAKAWNAFN------------------LSCKILLTTRFKQV 277
Query: 594 AEAEIEYKKKYDFSIYVGFSFSEPEKIKSIF------NLKNLPSGKGYIVIWTSTPWTIP 647
+ + + + + E KS+ ++LP
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEV-KSLLLKYLDCRPQDLPR---------------- 320
Query: 648 ANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINF 707
+ L +P +++ ++ L+ +
Sbjct: 321 --EVLTTNP------------------RRLSIIAESIRDG--------------LATWDN 346
Query: 708 F-HPLSN-----IDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDS 761
+ H + I+ + N L P + + +F +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKM---------------F--DRLSVF----PPSA 385
Query: 762 DIINPVMDDGNFISTLPLFGGMSIWKASK-----LICSYLKKSKTLFNIEMFEHSY-MHC 815
I P L L W ++ + L K +L + E + +
Sbjct: 386 HI--P-------TILLSLI-----WFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIP- 429
Query: 816 WRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRP 875
IY K+ + +L S + N K F S +I
Sbjct: 430 ------SIYLEL--------KVKLENEYALHRSIVDHYNIPKTFDSDD------LIPPYL 469
Query: 876 DWTISRQRHWGVPIAFFI--HKKSGKLHPKTLELIEL------IAKKIELNGIEIWQNLD 927
D +++ I H K+ + + + + +KI + +
Sbjct: 470 D------QYF----YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 928 IKEFLGDDAVNYKK---SNDTLDVWFDSGITH------QTVIRGSHKK--QLIFPAD--- 973
I L YK ND + I + +I + ++ A+
Sbjct: 520 ILNTLQ-QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Query: 974 LYLEGSDQ 981
++ E Q
Sbjct: 579 IFEEAHKQ 586
Score = 62.9 bits (152), Expect = 1e-09
Identities = 95/623 (15%), Positives = 195/623 (31%), Gaps = 142/623 (22%)
Query: 1861 LSNIDINYNRLSPIYLGDYIT-VDSGTGIVHSAPAYGIEDFL--IFKKQNMKDSDIINPV 1917
Y + ++ ++ D ++D I K+ + +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFD----------CKDVQDMPKSILSKEEIDH------I 54
Query: 1918 MDDGNFIS-TLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSY---MHCWRH--KTP 1971
+ + +S TL LF W + S ++ F E+ +Y M + + P
Sbjct: 55 IMSKDAVSGTLRLF-----W----TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 1972 -------IIYRTTL----QWFINMDKIPKNEK-KSLRESAITAINKIKFF-----PSWGK 2014
I R L Q F + + + + LR+ A+ + K GK
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQ-ALLELRPAKNVLIDGVLGSGK 163
Query: 2015 DRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE--- 2071
+ + + + + + + F+++ K+ LE+++ + +I+ N
Sbjct: 164 TWVALDVCL--SYKVQCKMDFKI---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 2072 ----IWQNLD-----IKEFLGDDAVNYKKSNDTLD-VW-------FDSGITHQTVI--RG 2112
I + ++ L Y+ L V F+ ++ + ++ R
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSK--PYENCLLVLLNVQNAKAWNAFN--LSCKILLTTRF 274
Query: 2113 SHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILNKSA--PYKALLTHGFVVDSKG 2166
+ A D H SLL + + P + L T+ +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 2167 KKMS--------------KSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEIL- 2211
+ + II+ L L AE +++ + + I +L
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 2212 ----NRVVETYRRIRNTL-RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEIL 2266
+ + + N L ++ L P + I I + K + N L + I+
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEK---QPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 2267 SHYRMYEFHMIVSKLQIYCSEDLGSFYLD--ILKDRLYTTKKNSHARRSAQTSIWHIN-- 2322
HY + + + S+DL YLD + K H R + ++
Sbjct: 451 DHYNI---------PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 2323 --QSLLRLISPILSFTSEEAWSIFSDKNFY---IESGETIFTQL-----HYKLPKVYNSK 2372
+ +R S + + + FY I + + +L + LPK
Sbjct: 502 FLEQKIRHDSTAWNASGSIL-NTLQQLKFYKPYICDNDPKYERLVNAILDF-LPK-IEEN 558
Query: 2373 KLLYKYMILKKIRSKVMQKLEKI 2395
+ KY L +R +M + E I
Sbjct: 559 LICSKYTDL--LRIALMAEDEAI 579
Score = 54.5 bits (130), Expect = 5e-07
Identities = 92/636 (14%), Positives = 203/636 (31%), Gaps = 156/636 (24%)
Query: 903 KTLELIELIAKKIELNGIE--IW-----QNLDIKEFLGD-DAVNYKKSNDTLDVWFDSGI 954
E+ +I K ++G W Q +++F+ + +NYK + S I
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK--------FLMSPI 98
Query: 955 THQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH------ 1008
+ +Q +Y+E D R + + + +++ PY L
Sbjct: 99 KTEQ-------RQPSMMTRMYIEQRD--RLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 1009 --GFVVDSKGKKMS---KS--KGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEIL 1061
++D G + K+ ++ K+ +I W+ + + +L
Sbjct: 150 AKNVLID--G--VLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSP----ETVL 199
Query: 1062 NRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI--LSHY 1119
+ + +I + SD + NI + I ++Q E+ L
Sbjct: 200 EMLQKLLYQIDPNW----TSRSDHSSNI---------------KLRIHSIQAELRRLLKS 240
Query: 1120 RMYEFHMIVSKL-QIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRL 1178
+ YE ++V L + ++ +F ++ L TT+ + + HI L
Sbjct: 241 KPYENCLLV--LLNVQNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHI-----SL 291
Query: 1179 ISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKV 1238
++ T +E S+ Y++ LP+ + +I + IR +
Sbjct: 292 DHHSMTLTPDEVKSLLLK---YLDCRPQ-------DLPREVLTTNPRRLSIIAESIRDGL 341
Query: 1239 M-----QKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFF----LLTSSV-S 1288
+ + + T II SSL N L+ + + L F + + + S
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSL--------NVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 1289 LFQIKNLSEECIIIKPSIYKKC--NRCW-------H--YQADVGERDDYPDLCNRCFNNL 1337
L + + +++ ++K + Y + ++ L ++
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 1338 FEPCAMCAGAII--------------HVRLGEIIYGTPSFKTGACGSIINL-FQEKKLNH 1382
P + +I H++ E F+ ++ F E+K+ H
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM----VFLDFRFLEQKIRH 509
Query: 1383 HTILTGGVMQKQCEKLLKSFFIKRRNFVKNKIQALPEN-RKFDLIIEKSVELGVKIIQPI 1441
+ L+ + N P+ R + I++ ++ +I
Sbjct: 510 DSTAWNAS--GSILNTLQQLKFYKPYICDND----PKYERLVNAILDFLPKIEENLI--C 561
Query: 1442 ITNRCIIQ--LNNERIIKKRIRWKNIIISATEQSGR 1475
+++ L E + I A +Q R
Sbjct: 562 SKYTDLLRIALMAED--------EAIFEEAHKQVQR 589
Score = 49.1 bits (116), Expect = 2e-05
Identities = 69/442 (15%), Positives = 150/442 (33%), Gaps = 107/442 (24%)
Query: 2053 KTLELIELIAKKIELNGIE--IW-----QNLDIKEFLGD-DAVNYKKSNDTLDVWFDSGI 2104
E+ +I K ++G W Q +++F+ + +NYK + S I
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK--------FLMSPI 98
Query: 2105 THQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH------ 2158
+ +Q +Y+E D R + + + +++ PY L
Sbjct: 99 KTEQ-------RQPSMMTRMYIEQRD--RLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 2159 --GFVVDSKGKKMS---KS--KGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEIL 2211
++D G + K+ ++ K+ +I W+ + + +L
Sbjct: 150 AKNVLID--G--VLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSP----ETVL 199
Query: 2212 NRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI--LSHY 2269
+ + +I + SD + NI + I ++Q E+ L
Sbjct: 200 EMLQKLLYQIDPNW----TSRSDHSSNI---------------KLRIHSIQAELRRLLKS 240
Query: 2270 RMYEFHMIVSKL-QIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRL 2328
+ YE ++V L + ++ +F ++ L TT+ + + HI L
Sbjct: 241 KPYENCLLV--LLNVQNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHI-----SL 291
Query: 2329 ISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKV 2388
++ T +E S+ Y++ LP+ + +I + IR +
Sbjct: 292 DHHSMTLTPDEVKSLLLK---YLDCRPQ-------DLPREVLTTNPRRLSIIAESIRDGL 341
Query: 2389 M-----QKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFF----LLTSSV-S 2438
+ + + T II SSL N L+ + + L F + + + S
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSL--------NVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 2439 LFQIKNLSEECIIIKPSIYKKC 2460
L + + +++ ++K
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYS 415
Score = 41.8 bits (97), Expect = 0.004
Identities = 46/300 (15%), Positives = 93/300 (31%), Gaps = 97/300 (32%)
Query: 1 SLDVAREIIELGFYISFSGIVTF-KNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAKL 59
SL+V + S + F ++ I ++ S+ +++ ++ K
Sbjct: 362 SLNVLEPAEYRKMFDRLS-V--FPPSAHIPTILL-SLIWFDVIKSDVMVVVN---KLHKY 414
Query: 60 ALIAGEVPVGAVLVKNNLVISYGYNQQI-----TRNDPTAHAEIIALRMASKLLNNYRFS 114
+L+ + IS + + N+ H ++++Y
Sbjct: 415 SLVEKQ--------PKESTISI-PSIYLELKVKLENEYALHR---------SIVDHYNIP 456
Query: 115 KNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGG 174
K + + +I L + Y S + HH L
Sbjct: 457 KTF-----------DSDDLIPPYLDQYFY---SH----------------IGHH--LK-N 483
Query: 175 VMQKQCEKLLKSFFIKRRNFVKNKSINIKMLRFYYPIPFIIGQYLYLPDNIVNHLNVLRV 234
+ + L + F+ R F++ K +R +I+N L L+
Sbjct: 484 IEHPERMTLFRMVFLDFR-FLEQK------IRH-------DSTAWNASGSILNTLQQLK- 528
Query: 235 KYKNTIILFNGFGGEYIAKLISIKKKILIQIISFLFRE----IELPYTITLVQ-AL-PEN 288
YK YI ++++ I+ FL + I YT L++ AL E+
Sbjct: 529 FYKP-----------YICDNDPKYERLVNAILDFLPKIEENLICSKYT-DLLRIALMAED 576
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 3.20A
{Archaeoglobus fulgidus dsm 4304}
Length = 261
Score = 75.1 bits (185), Expect = 1e-14
Identities = 4/52 (7%), Positives = 21/52 (40%)
Query: 3 DVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIP 54
+ ++E ++I + +++ +++ + ++ +D+ Y
Sbjct: 164 ETLDMVLETEYWIGLTVQPGKLSAEDAARIVAEHGPERFMLNSDAGYRDVEI 215
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Length = 401
Score = 77.1 bits (189), Expect = 2e-14
Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 15/114 (13%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAKLA 60
S ++++ L I ++ V+ I + +L+ETD+P+ A
Sbjct: 258 SAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLLLETDAPWCEIKRTHASFQ 317
Query: 61 LIAG-------EVPVGAVLVKNNLVISYGYNQQIT---RNDPTAH----AEIIA 100
+A E P + KN L + RN+P + A +++
Sbjct: 318 YLAKYQEVRDFEYPAFKSVKKNKLADKLNAEELYMVKGRNEP-CNMEQVAIVVS 370
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 73.2 bits (180), Expect = 7e-13
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 13/142 (9%)
Query: 459 PYANGDIHIGHAVNKILK-DIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSP 517
PYANG IH GH L DI V++ + G D ++ G D HG PI + K + SP
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK---EGRSP 67
Query: 518 IEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 577
EI ++ K+ F R I +D +T ++ F ++ G++
Sbjct: 68 REIVDEFHEQ-------IKITFQRAKI--SFDFFGRTELPIHYKLSQEFFLKAYENGHLV 118
Query: 578 HGLKPVNWCFDCKSALAEAEIE 599
+ +C K L + +
Sbjct: 119 KKVTKQAYCEHDKMFLPDRFVI 140
Score = 73.2 bits (180), Expect = 7e-13
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 13/142 (9%)
Query: 1609 PYANGDIHIGHAVNKILK-DIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSP 1667
PYANG IH GH L DI V++ + G D ++ G D HG PI + K + SP
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK---EGRSP 67
Query: 1668 IEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 1727
EI ++ K+ F R I +D +T ++ F ++ G++
Sbjct: 68 REIVDEFHEQ-------IKITFQRAKI--SFDFFGRTELPIHYKLSQEFFLKAYENGHLV 118
Query: 1728 HGLKPVNWCFDCKSALAEAEIE 1749
+ +C K L + +
Sbjct: 119 KKVTKQAYCEHDKMFLPDRFVI 140
Score = 58.6 bits (142), Expect = 2e-08
Identities = 77/408 (18%), Positives = 146/408 (35%), Gaps = 97/408 (23%)
Query: 819 KTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWT 878
PI +R + ++I M + K+ + + N SW ++ L+ +
Sbjct: 177 GRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKP-NVKNMVLSWIEEGLE-------ERA 228
Query: 879 ISRQRHWGVPIAFFIHKKSGKLH------P-----KTLELIELIAKKIELNGIEIWQNLD 927
I+R +WG+P+ GK+ P T+E + I K E + W N+D
Sbjct: 229 ITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWK--KYWLNID 286
Query: 928 IK----EFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHR 983
+ F+G K N I + +PA +L +++
Sbjct: 287 GQTRVIHFIG-------KDN----------IPFHAIF---------WPA--FLMAYGKYK 318
Query: 984 GWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 1043
+ P + + ++ +GKK S S+ I + ++F A+ LR
Sbjct: 319 DEEVEAEWNL-------P-YDIPANEYL-TLEGKKFSTSRNWAIWVHEFLDVFPADYLRY 369
Query: 1044 WVASTD-YSKDLSIS---------NEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIK 1093
++ + ++D S E++N + R L F+ F+ + +
Sbjct: 370 YLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHR---ALTFVNRY---FDGVVP--E 421
Query: 1094 ISDMVEIDKYAIINITNLQKEILSHYRMYEFH------MIVSKLQIYCSEDLGSFYLDIL 1147
++ E+D+ A+ I KE+ Y F M ++ G+ Y D
Sbjct: 422 RGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA--------SFGNRYFDHK 473
Query: 1148 KDRLYTTKKNSHARRSAQTSI-WHINQSLLRLISPILSFTSEEAWSIF 1194
+ + T K R +I I ++L L+ P L SE+ W +
Sbjct: 474 QP--WKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLL 519
Score = 58.6 bits (142), Expect = 2e-08
Identities = 77/408 (18%), Positives = 146/408 (35%), Gaps = 97/408 (23%)
Query: 1969 KTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWT 2028
PI +R + ++I M + K+ + + N SW ++ L+ +
Sbjct: 177 GRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKP-NVKNMVLSWIEEGLE-------ERA 228
Query: 2029 ISRQRHWGVPIAFFIHKKSGKLH------P-----KTLELIELIAKKIELNGIEIWQNLD 2077
I+R +WG+P+ GK+ P T+E + I K E + W N+D
Sbjct: 229 ITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWK--KYWLNID 286
Query: 2078 IK----EFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHR 2133
+ F+G K N I + +PA +L +++
Sbjct: 287 GQTRVIHFIG-------KDN----------IPFHAIF---------WPA--FLMAYGKYK 318
Query: 2134 GWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 2193
+ P + + ++ +GKK S S+ I + ++F A+ LR
Sbjct: 319 DEEVEAEWNL-------P-YDIPANEYL-TLEGKKFSTSRNWAIWVHEFLDVFPADYLRY 369
Query: 2194 WVASTD-YSKDLSIS---------NEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIK 2243
++ + ++D S E++N + R L F+ F+ + +
Sbjct: 370 YLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHR---ALTFVNRY---FDGVVP--E 421
Query: 2244 ISDMVEIDKYAIINITNLQKEILSHYRMYEFH------MIVSKLQIYCSEDLGSFYLDIL 2297
++ E+D+ A+ I KE+ Y F M ++ G+ Y D
Sbjct: 422 RGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA--------SFGNRYFDHK 473
Query: 2298 KDRLYTTKKNSHARRSAQTSI-WHINQSLLRLISPILSFTSEEAWSIF 2344
+ + T K R +I I ++L L+ P L SE+ W +
Sbjct: 474 QP--WKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLL 519
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 71.9 bits (177), Expect = 2e-12
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++L ++P
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL---GITPE 83
Query: 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 577
++ + ++ + DF I +DN + T N + + + G++
Sbjct: 84 QMIGEMS-------QEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRLKENGFIK 133
Score = 71.9 bits (177), Expect = 2e-12
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 1668
PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++L ++P
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL---GITPE 83
Query: 1669 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 1727
++ + ++ + DF I +DN + T N + + + G++
Sbjct: 84 QMIGEMS-------QEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRLKENGFIK 133
Score = 40.7 bits (96), Expect = 0.006
Identities = 76/408 (18%), Positives = 133/408 (32%), Gaps = 115/408 (28%)
Query: 820 TPIIYRTTLQWFINMDKIPKNEKKSLRESAIT--AINKIKFFPSWGKDRLKSMILNRPDW 877
TP++ R + +F ++ + + R A+ NK++ W + L+ W
Sbjct: 194 TPVM-RDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQ---EWFESGLQ-------QW 242
Query: 878 TISRQRHW-GVPIAFFIHKKSGKLH------PKTLELIELIAKKIELNGIEIWQNLDIKE 930
ISR + G I GK P I L+ L + ++ E
Sbjct: 243 DISRDAPYFGFE----IPNAPGKYFYVWLDAP-----IGLMGSFKNL-CDKRGDSVSFDE 292
Query: 931 FLGDDAVNYKKSNDTLDVWF---DSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFH 987
+ D + F D + + L +PA LEGS +
Sbjct: 293 YWKKD-------STAELYHFIGKDI-VYFLS---------LFWPA--MLEGS----NF-- 327
Query: 988 SSLLTSIILNKSAPYKALLTHGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 1046
+++ HG+V V+ G KMSKS+G IK N F A+ LR +
Sbjct: 328 -RKPSNLF-----------VHGYVTVN--GAKMSKSRGTFIKASTWLNHFDADSLRYYYT 373
Query: 1047 STDYS--KDLSIS---------NEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKIS 1095
+ S D+ ++ +I+N+VV R F+ +
Sbjct: 374 AKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASR---NAGFINKRFDGVLAS------- 423
Query: 1096 DMVEIDKYAIINITNLQKEILSHYRMYEFH------MIVSKLQIYCSEDLGSFYLDILKD 1149
D T+ + I + EF M ++ DL + Y+D
Sbjct: 424 --ELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA--------DLANRYVDEQAP 473
Query: 1150 RLYTTKKNSHARRSAQTSIW---HINQSLLRLISPILSFTSEEAWSIF 1194
+ K Q ++ + L+ + P+L +E A +
Sbjct: 474 --WVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFL 519
Score = 40.7 bits (96), Expect = 0.006
Identities = 76/408 (18%), Positives = 133/408 (32%), Gaps = 115/408 (28%)
Query: 1970 TPIIYRTTLQWFINMDKIPKNEKKSLRESAIT--AINKIKFFPSWGKDRLKSMILNRPDW 2027
TP++ R + +F ++ + + R A+ NK++ W + L+ W
Sbjct: 194 TPVM-RDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQ---EWFESGLQ-------QW 242
Query: 2028 TISRQRHW-GVPIAFFIHKKSGKLH------PKTLELIELIAKKIELNGIEIWQNLDIKE 2080
ISR + G I GK P I L+ L + ++ E
Sbjct: 243 DISRDAPYFGFE----IPNAPGKYFYVWLDAP-----IGLMGSFKNL-CDKRGDSVSFDE 292
Query: 2081 FLGDDAVNYKKSNDTLDVWF---DSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFH 2137
+ D + F D + + L +PA LEGS +
Sbjct: 293 YWKKD-------STAELYHFIGKDI-VYFLS---------LFWPA--MLEGS----NF-- 327
Query: 2138 SSLLTSIILNKSAPYKALLTHGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196
+++ HG+V V+ G KMSKS+G IK N F A+ LR +
Sbjct: 328 -RKPSNLF-----------VHGYVTVN--GAKMSKSRGTFIKASTWLNHFDADSLRYYYT 373
Query: 2197 STDYS--KDLSIS---------NEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKIS 2245
+ S D+ ++ +I+N+VV R F+ +
Sbjct: 374 AKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASR---NAGFINKRFDGVLAS------- 423
Query: 2246 DMVEIDKYAIINITNLQKEILSHYRMYEFH------MIVSKLQIYCSEDLGSFYLDILKD 2299
D T+ + I + EF M ++ DL + Y+D
Sbjct: 424 --ELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA--------DLANRYVDEQAP 473
Query: 2300 RLYTTKKNSHARRSAQTSIW---HINQSLLRLISPILSFTSEEAWSIF 2344
+ K Q ++ + L+ + P+L +E A +
Sbjct: 474 --WVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFL 519
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase
domain and reductase domain, hydrolase, oxidoreductase;
2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB:
2d5n_A* 3ex8_A*
Length = 373
Score = 66.8 bits (164), Expect = 3e-11
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 30/132 (22%)
Query: 68 VGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCA 127
VGAV+VK+ ++ G + + AHAE+ A+ MA + IYVTLEPC+
Sbjct: 38 VGAVVVKDGQIVGMGAHLKYGE----AHAEVHAIHMAGAHA------EGADIYVTLEPCS 87
Query: 128 M------CAGAIIHVRLGEIIYGT----PSFKTGACGSIINLFQEKKLNHHTI-LTGGVM 176
CA II+ + + P G I + I + G++
Sbjct: 88 HYGKTPPCAELIINSGIKRVFVAMRDPNPL----VAGRGI-----SMMKEAGIEVREGIL 138
Query: 177 QKQCEKLLKSFF 188
Q E+L + F
Sbjct: 139 ADQAERLNEKFL 150
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami
amino-6-(5-phosphoribosylamino)uracil...;
oxidoreductase, structural genomics; HET: NDP; 1.80A
{Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Length = 360
Score = 66.4 bits (163), Expect = 4e-11
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 68 VGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCA 127
VGAV+VK+ +I+ G++ HAE +A+ A K + R + + VTLEPC
Sbjct: 38 VGAVVVKDGRIIAEGFHPYFGG----PHAERMAIESARKKGEDLRGAT---LIVTLEPCD 90
Query: 128 M------CAGAIIHVRLGEIIYGT--PSFKTGACGSIINLFQEKKLNHHTI-LTGGVMQK 178
C II + ++ GT P+ +G + +K +H I + GV+++
Sbjct: 91 HHGKTPPCTDLIIESGIKTVVIGTRDPNPVSG--NGV------EKFRNHGIEVIEGVLEE 142
Query: 179 QCEKLLKSFF 188
+ +KL + F
Sbjct: 143 EVKKLCEFFI 152
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein
biosynthesis I aminoacyl-tRNA synthetase, ATP-binding;
2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Length = 880
Score = 67.6 bits (166), Expect = 5e-11
Identities = 87/443 (19%), Positives = 153/443 (34%), Gaps = 114/443 (25%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W EK+ + S + K+ PY +G +H+GH N + D+I ++ M
Sbjct: 31 ESKVQLHWDEKRTFEVTEDES--KEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRM 88
Query: 1636 DGFDAQYV--P-GYDCHGMPIE---IQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDF 1689
G + V P G+D G+P E ++ N +P Y+ I K
Sbjct: 89 LGKN---VLQPIGWDAFGLPAEGAAVK------NNTAP-------APWTYDNIAYMKNQL 132
Query: 1690 MRLGILGEWDNSYKTMD----------FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 1739
LG +W T F EL +KKG VY VNWC +
Sbjct: 133 KMLGFGYDWSRELATCTPEYYRWEQKFFT----EL------YKKGLVYKKTSAVNWCPND 182
Query: 1740 KSALA------------EAEIEYKK--KYDFSIYVGFSFSE------------PEKIKS- 1772
++ LA + ++E K+ ++ I ++++ P+ +K+
Sbjct: 183 QTVLANEQVIDGCCWRCDTKVERKEIPQWFIKIT---AYADELLNDLDKLDHWPDTVKTM 239
Query: 1773 -------------IFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDP 1819
FN+ + + ++T+ P T L V A +N+P
Sbjct: 240 QRNWIGRSEGVEITFNVND---YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNP 296
Query: 1820 PLLLILAFNLVKSCLKKFGFKGNIIGICK-GIKLSKINFFHPLSNIDINYNRLSPIYLGD 1878
+ AF + C + + + K G+ HPL+ +I P++ +
Sbjct: 297 E---LAAF--IDECRNTKVAEAEMATMEKKGVDTG-FKAVHPLTGEEI------PVWAAN 344
Query: 1879 YITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPL--------- 1929
++ ++ GTG V + P + D+ K + +I +S L
Sbjct: 345 FVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNS 404
Query: 1930 --FGGMSIWKASKLICSYLKKSK 1950
F G+ A I L
Sbjct: 405 GEFNGLDHEAAFNAIADKLTAMG 427
Score = 55.7 bits (135), Expect = 2e-07
Identities = 81/410 (19%), Positives = 143/410 (34%), Gaps = 112/410 (27%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYV--P-GYDCHGMPIE---IQIEKLYG 512
PY +G +H+GH N + D+I ++ M G + V P G+D G+P E ++
Sbjct: 62 PYPSGRLHMGHVRNYTIGDVIARYQRMLGKN---VLQPIGWDAFGLPAEGAAVK------ 112
Query: 513 KNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD----------FLNEAN 562
N +P Y+ I K LG +W T F
Sbjct: 113 NNTAP-------APWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFT---- 161
Query: 563 ELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA------------EAEIEYKK--KYDFSI 608
EL +KKG VY VNWC + ++ LA + ++E K+ ++ I
Sbjct: 162 EL------YKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKI 215
Query: 609 YVGFSFSE------------PEKIKS--------------IFNLKNLPSGKGYIVIWTST 642
++++ P+ +K+ FN+ + + ++T+
Sbjct: 216 T---AYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVND---YDNTLTVYTTR 269
Query: 643 PWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICK-GIK 701
P T L V A +N+P + AF + C + + + K G+
Sbjct: 270 PDTFMGCTYLAVAAGHPLAQKAAENNPE---LAAF--IDECRNTKVAEAEMATMEKKGVD 324
Query: 702 LSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDS 761
HPL+ +I P++ +++ ++ GTG V + P + D+ K +
Sbjct: 325 TG-FKAVHPLTGEEI------PVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIK 377
Query: 762 DIINPVMDDGNFISTLPL-----------FGGMSIWKASKLICSYLKKSK 800
+I +S L F G+ A I L
Sbjct: 378 PVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMG 427
Score = 49.1 bits (118), Expect = 2e-05
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 975 YLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK-KMSKSKGNIIKPQKLC 1033
Y G + R W K KA G + G KMSKSK N I PQ +
Sbjct: 595 YYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMV 654
Query: 1034 NLFGAEILRL 1043
+GA+ +RL
Sbjct: 655 ERYGADTVRL 664
Score = 49.1 bits (118), Expect = 2e-05
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 2125 YLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK-KMSKSKGNIIKPQKLC 2183
Y G + R W K KA G + G KMSKSK N I PQ +
Sbjct: 595 YYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMV 654
Query: 2184 NLFGAEILRL 2193
+GA+ +RL
Sbjct: 655 ERYGADTVRL 664
Score = 42.9 bits (102), Expect = 0.001
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 876 DWTISRQRHWGVPIAFFIHKKSGKLHP---KTL-----ELIELIAKKIELNGIEIWQNLD 927
DW +SRQR+WG PI + + G + P L E + + + W
Sbjct: 439 DWGVSRQRYWGAPIPM-VTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTT 497
Query: 928 IKEFLGDDAVNYKKSNDTLDVWFDS 952
+ G A + DT D + +S
Sbjct: 498 VN---GMPA---LRETDTFDTFMES 516
Score = 42.9 bits (102), Expect = 0.001
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 2026 DWTISRQRHWGVPIAFFIHKKSGKLHP---KTL-----ELIELIAKKIELNGIEIWQNLD 2077
DW +SRQR+WG PI + + G + P L E + + + W
Sbjct: 439 DWGVSRQRYWGAPIPM-VTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTT 497
Query: 2078 IKEFLGDDAVNYKKSNDTLDVWFDS 2102
+ G A + DT D + +S
Sbjct: 498 VN---GMPA---LRETDTFDTFMES 516
Score = 31.4 bits (72), Expect = 5.2
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 44/99 (44%)
Query: 815 CWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITA--------INKIKFFPSWGKDR 866
CWR T + + QWFI ITA ++K+ +P D
Sbjct: 196 CWRCDTKVERKEIPQWFIK----------------ITAYADELLNDLDKLDHWP----DT 235
Query: 867 LKSMILNRPDWTISRQRHW-----GVPIAFFIHKKSGKL 900
+K+M QR+W GV I F ++ L
Sbjct: 236 VKTM-----------QRNWIGRSEGVEITFNVNDYDNTL 263
Score = 31.4 bits (72), Expect = 5.2
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 44/99 (44%)
Query: 1965 CWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITA--------INKIKFFPSWGKDR 2016
CWR T + + QWFI ITA ++K+ +P D
Sbjct: 196 CWRCDTKVERKEIPQWFIK----------------ITAYADELLNDLDKLDHWP----DT 235
Query: 2017 LKSMILNRPDWTISRQRHW-----GVPIAFFIHKKSGKL 2050
+K+M QR+W GV I F ++ L
Sbjct: 236 VKTM-----------QRNWIGRSEGVEITFNVNDYDNTL 263
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 65.7 bits (161), Expect = 1e-10
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 43/185 (23%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W + W+EK R K + PY +GD+H+GH N + D++ +F M
Sbjct: 10 EAKWQRFWEEKGFMKAKDLPG-GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRM 68
Query: 1636 DGFDAQYV--P-GYDCHGMPIE---IQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDF 1689
G++ V P G+D G+P E ++ + P + Y I Q K
Sbjct: 69 QGYE---VLHPMGWDAFGLPAENAALK------FGVHP-------KDWTYANIRQAKESL 112
Query: 1690 MRLGILGEWDNSYKTMD----------FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 1739
+GIL +WD T + FL ++ ++KG Y VNWC C
Sbjct: 113 RLMGILYDWDREVTTCEPEYYRWNQWIFL----KM------WEKGLAYRAKGLVNWCPKC 162
Query: 1740 KSALA 1744
++ LA
Sbjct: 163 QTVLA 167
Score = 52.6 bits (127), Expect = 2e-06
Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 42/163 (25%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYV--P-GYDCHGMPIE 504
R K + PY +GD+H+GH N + D++ +F M G++ V P G+D G+P E
Sbjct: 31 GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYE---VLHPMGWDAFGLPAE 87
Query: 505 ---IQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD----- 556
++ + P + Y I Q K +GIL +WD T +
Sbjct: 88 NAALK------FGVHP-------KDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYR 134
Query: 557 -----FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA 594
FL ++ ++KG Y VNWC C++ LA
Sbjct: 135 WNQWIFL----KM------WEKGLAYRAKGLVNWCPKCQTVLA 167
Score = 50.7 bits (122), Expect = 6e-06
Identities = 42/192 (21%), Positives = 71/192 (36%), Gaps = 55/192 (28%)
Query: 876 DWTISRQRHWGVPIAFFIHKKSGKLH-----------PKTLELIELIAKKIE-LNGIEIW 923
DW ISRQR+WG PI +H ++ + P ++ ++ K L +
Sbjct: 421 DWLISRQRYWGTPIP-MVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEF 479
Query: 924 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGS---------HKKQLIF---- 970
+ G A K+ DT+D +FDS S H +L F
Sbjct: 480 YETTCPK-CGGPA---KRDTDTMDTFFDS----------SWYYLRYTDPHNDRLPFDPEK 525
Query: 971 -----PADLYLEGSDQH--------RGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK 1017
P D Y+ G +H R +F L ++ P++ L T G V+
Sbjct: 526 ANAWMPVDQYI-GGVEHAVLHLLYSR-FFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDF 583
Query: 1018 KMSKSKGNIIKP 1029
+ +G++++
Sbjct: 584 GPVEVEGSVVRL 595
Score = 50.7 bits (122), Expect = 6e-06
Identities = 42/192 (21%), Positives = 71/192 (36%), Gaps = 55/192 (28%)
Query: 2026 DWTISRQRHWGVPIAFFIHKKSGKLH-----------PKTLELIELIAKKIE-LNGIEIW 2073
DW ISRQR+WG PI +H ++ + P ++ ++ K L +
Sbjct: 421 DWLISRQRYWGTPIP-MVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEF 479
Query: 2074 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGS---------HKKQLIF---- 2120
+ G A K+ DT+D +FDS S H +L F
Sbjct: 480 YETTCPK-CGGPA---KRDTDTMDTFFDS----------SWYYLRYTDPHNDRLPFDPEK 525
Query: 2121 -----PADLYLEGSDQH--------RGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK 2167
P D Y+ G +H R +F L ++ P++ L T G V+
Sbjct: 526 ANAWMPVDQYI-GGVEHAVLHLLYSR-FFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDF 583
Query: 2168 KMSKSKGNIIKP 2179
+ +G++++
Sbjct: 584 GPVEVEGSVVRL 595
Score = 41.4 bits (98), Expect = 0.004
Identities = 42/213 (19%), Positives = 70/213 (32%), Gaps = 49/213 (23%)
Query: 997 NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLS 1055
K G + K MSKSKGN + GA+I R+ + ++
Sbjct: 616 RKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMV 675
Query: 1056 ISNE-------ILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINI 1108
+ E LNR+ YRR+ LL + F +
Sbjct: 676 WTEEGVQGAWRFLNRI---YRRVAEDREALLETSGVFQAE------------------AL 714
Query: 1109 TNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY-------LDILKDRLYTTKKNSHAR 1161
+E+ + H + K +EDL + L + LY +K+
Sbjct: 715 EGKDRELY-----GKLHETLKK----VTEDLEALRFNTAIAALMEFLNALYEYRKDRPVT 765
Query: 1162 RSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 1194
+T+I + L+++ P +EE W F
Sbjct: 766 PVYRTAI----RYYLQMLFPFAPHLAEELWHWF 794
Score = 41.4 bits (98), Expect = 0.004
Identities = 42/213 (19%), Positives = 70/213 (32%), Gaps = 49/213 (23%)
Query: 2147 NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLS 2205
K G + K MSKSKGN + GA+I R+ + ++
Sbjct: 616 RKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMV 675
Query: 2206 ISNE-------ILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINI 2258
+ E LNR+ YRR+ LL + F +
Sbjct: 676 WTEEGVQGAWRFLNRI---YRRVAEDREALLETSGVFQAE------------------AL 714
Query: 2259 TNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY-------LDILKDRLYTTKKNSHAR 2311
+E+ + H + K +EDL + L + LY +K+
Sbjct: 715 EGKDRELY-----GKLHETLKK----VTEDLEALRFNTAIAALMEFLNALYEYRKDRPVT 765
Query: 2312 RSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 2344
+T+I + L+++ P +EE W F
Sbjct: 766 PVYRTAI----RYYLQMLFPFAPHLAEELWHWF 794
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure,
structural genomics, structural proteomi europe, spine,
hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB:
2obc_A* 2o7p_A*
Length = 402
Score = 64.5 bits (158), Expect = 2e-10
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 30/133 (22%)
Query: 67 PVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPC 126
VG V+VK+ ++ GY + HAE+ ALRMA + K YVTLEPC
Sbjct: 53 NVGCVIVKDGEIVGEGY----HQRAGEPHAEVHALRMAGEKA------KGATAYVTLEPC 102
Query: 127 AM------CAGAIIHVRLGEIIYGT----PSFKTGACGSIINLFQEKKLNHHTI-LTGGV 175
+ C A+I + ++ P G + +L I ++ G+
Sbjct: 103 SHHGRTPPCCDALIAAGVARVVASMQDPNPQ----VAGRGL-----YRLQQAGIDVSHGL 153
Query: 176 MQKQCEKLLKSFF 188
M + E+L K F
Sbjct: 154 MMSEAEQLNKGFL 166
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich,
protein-liand complex, hydrolase; HET: DCP DDN; 1.67A
{Streptococcus mutans} PDB: 2hvv_A*
Length = 184
Score = 58.9 bits (143), Expect = 1e-09
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 18/91 (19%)
Query: 68 VGAVLVKNNLVISYGYN-------QQITRNDP--------TAHAEIIALRMASKLLNNYR 112
VGAVLVKNN +I+ GYN T HAE+ AL +K +
Sbjct: 63 VGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGIS-- 120
Query: 113 FSKNYKIYVTLEPCAMCAGAIIHVRLGEIIY 143
+ N +IYVT PC C A++ + +I Y
Sbjct: 121 -ANNTEIYVTHFPCINCTKALLQAGVKKITY 150
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus thermophilus}
SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Length = 500
Score = 61.1 bits (149), Expect = 3e-09
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 948 VWFDSGITHQTVI--RGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILNKSAP 1001
VWFD+ + + + + + +P +L G D + H+ ++L + +
Sbjct: 226 VWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILK--PHAVFWPTMLKAAGI---PM 280
Query: 1002 YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEI 1060
Y+ L GF++ G+KMSK+ GN++ P L +G + LR ++ Y +D +S E
Sbjct: 281 YRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEA 340
Query: 1061 L 1061
L
Sbjct: 341 L 341
Score = 61.1 bits (149), Expect = 3e-09
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 2098 VWFDSGITHQTVI--RGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILNKSAP 2151
VWFD+ + + + + + +P +L G D + H+ ++L + +
Sbjct: 226 VWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILK--PHAVFWPTMLKAAGI---PM 280
Query: 2152 YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEI 2210
Y+ L GF++ G+KMSK+ GN++ P L +G + LR ++ Y +D +S E
Sbjct: 281 YRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEA 340
Query: 2211 L 2211
L
Sbjct: 341 L 341
Score = 51.9 bits (125), Expect = 2e-06
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y N + H+GHA ++ D + +++ +DG+ ++ G D HG + + P
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA---AGEDPKA 69
Score = 51.9 bits (125), Expect = 2e-06
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y N + H+GHA ++ D + +++ +DG+ ++ G D HG + + P
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA---AGEDPKA 69
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 61.2 bits (148), Expect = 3e-09
Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y N HIGH + ++ D+I +++ + G + G D HG + ++ K +SP +
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ---KQVSPYD 75
Query: 520 IQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 579
+ K F ++ D +T + ++A + + +KG +Y G
Sbjct: 76 -------FTTAVAGEFKKXFEQMDY--SIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 580 LKPVNWCFDCKSALAEAEIE 599
+ +S L I
Sbjct: 127 RYEGWYSISDESFLTPQNIT 146
Score = 61.2 bits (148), Expect = 3e-09
Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y N HIGH + ++ D+I +++ + G + G D HG + ++ K +SP +
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ---KQVSPYD 75
Query: 1670 IQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729
+ K F ++ D +T + ++A + + +KG +Y G
Sbjct: 76 -------FTTAVAGEFKKXFEQMDY--SIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 1730 LKPVNWCFDCKSALAEAEIE 1749
+ +S L I
Sbjct: 127 RYEGWYSISDESFLTPQNIT 146
Score = 55.8 bits (134), Expect = 1e-07
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 38/203 (18%)
Query: 948 VWFDSGITHQTVI-------------RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSI 994
VW D+ + T + FPAD+++ G D + FH+ +
Sbjct: 242 VWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILK--FHAIYWPAF 299
Query: 995 ILNKSAP-YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLW-VASTDYSK 1052
+L+ P K ++ HG+ KK+SKS GN+ P + FG + L+ + + + +S
Sbjct: 300 LLSAGLPLPKKIVAHGWWT-KDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSD 358
Query: 1053 DLSISNEILNRVVETYRRIRNTLRFLLANT----------SDFNPNINIIKISDMVEIDK 1102
D S++ + L LA+T + N N + E D+
Sbjct: 359 DGDYSDK----------NMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDE 408
Query: 1103 YAIINITNLQKEILSHYRMYEFH 1125
I I +L +Y + +
Sbjct: 409 SLIQLIKDLPGTADHYYLIPDIQ 431
Score = 55.8 bits (134), Expect = 1e-07
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 38/203 (18%)
Query: 2098 VWFDSGITHQTVI-------------RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSI 2144
VW D+ + T + FPAD+++ G D + FH+ +
Sbjct: 242 VWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILK--FHAIYWPAF 299
Query: 2145 ILNKSAP-YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLW-VASTDYSK 2202
+L+ P K ++ HG+ KK+SKS GN+ P + FG + L+ + + + +S
Sbjct: 300 LLSAGLPLPKKIVAHGWWT-KDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSD 358
Query: 2203 DLSISNEILNRVVETYRRIRNTLRFLLANT----------SDFNPNINIIKISDMVEIDK 2252
D S++ + L LA+T + N N + E D+
Sbjct: 359 DGDYSDK----------NMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDE 408
Query: 2253 YAIINITNLQKEILSHYRMYEFH 2275
I I +L +Y + +
Sbjct: 409 SLIQLIKDLPGTADHYYLIPDIQ 431
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 61.1 bits (149), Expect = 3e-09
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 948 VWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILNKSAPYK 1003
VWFD+ + + + + +PADL+L G D R FH+ + L S+ K
Sbjct: 229 VWFDALFNYISALEDKVEI--YWPADLHLVGKDILR--FHTVYWPAFLMSLGY---ELPK 281
Query: 1004 ALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEIL 1061
+ HG+ +GKKMSK+ GN++ P ++ +G + +R ++ + +D S + +
Sbjct: 282 KVFAHGWWT-VEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAI 339
Score = 61.1 bits (149), Expect = 3e-09
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 2098 VWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILNKSAPYK 2153
VWFD+ + + + + +PADL+L G D R FH+ + L S+ K
Sbjct: 229 VWFDALFNYISALEDKVEI--YWPADLHLVGKDILR--FHTVYWPAFLMSLGY---ELPK 281
Query: 2154 ALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEIL 2211
+ HG+ +GKKMSK+ GN++ P ++ +G + +R ++ + +D S + +
Sbjct: 282 KVFAHGWWT-VEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAI 339
Score = 52.2 bits (126), Expect = 2e-06
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y N H+GHA I D I ++Y + +D ++ G D HG+ I+ + E+ +SP E
Sbjct: 15 YVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE---LGISPKE 71
Score = 52.2 bits (126), Expect = 2e-06
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y N H+GHA I D I ++Y + +D ++ G D HG+ I+ + E+ +SP E
Sbjct: 15 YVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE---LGISPKE 71
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 1e-08
Identities = 119/764 (15%), Positives = 202/764 (26%), Gaps = 323/764 (42%)
Query: 414 IILSLGKRILRTE----TASLVALAILNGVWGEIKASINRP--KFILHDGPPYANGDI-- 465
+ LS G L TAS + L + + P F D P ++
Sbjct: 9 LTLSHGS--LEHVLLVPTASFFIASQL---QEQFNKILPEPTEGFAADD-EPTTPAELVG 62
Query: 466 ----HIGHAVNK--------ILKDIIVKFYNMDGFDAQYVPGYDCH----GMPIEIQIEK 509
++ V +L + F+ Y+ G D H + E
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCL------TEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 510 LYGKNLSPIEIQN--KARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRA- 566
+ K L I+N AR +A +++ NS E A
Sbjct: 117 VKTKEL----IKNYITARIMAKRPFDKKS-------------NS----ALFRAVGEGNAQ 155
Query: 567 ----FGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGF--SFSEPEKI 620
FG G G + F+ E + Y Y I
Sbjct: 156 LVAIFG-----G---QG--NTDDYFE----------ELRDLYQ--TYHVLVGDL-----I 188
Query: 621 KSIFN-LKNLPS---------GKGY-IVIWTSTPWTIPANQALHVHPEFDYALVHIKNDP 669
K L L +G I+ W P P L +
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL------LSIPISC---- 238
Query: 670 PLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDY 729
PL+ ++ + + K + + L G
Sbjct: 239 PLIGVIQL-------------AHYVVTAKLLGFTPGELRSYLK--------------G-- 269
Query: 730 ITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKAS 789
G+V +A A I +F +
Sbjct: 270 -ATGHSQGLV-TAVA-------------------IAETDSWESFFVS-----------VR 297
Query: 790 KLICSYLKKSKTLFNI-----EMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIP------ 838
K I LF I E + ++ + P I +L+ N + +P
Sbjct: 298 KAI-------TVLFFIGVRCYEAYPNTSL------PPSILEDSLE---NNEGVPSPMLSI 341
Query: 839 KNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSG 898
N + + + N P+ + + S++ N + SG
Sbjct: 342 SNLTQEQVQDYVNKTN--SHLPAGKQVEI-SLV-NGAK-------------NLVV---SG 381
Query: 899 KLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQT 958
P++L + L +K K+ LD Q+
Sbjct: 382 --PPQSLYGLNLTLRKA-------------------------KAPSGLD---------QS 405
Query: 959 VIRGSHKK---QLIF-----PADLYLEGSDQHRGWFHSSLL---TSIILNKSAPYKALLT 1007
I S +K F P FHS LL + +I K L+
Sbjct: 406 RIPFSERKLKFSNRFLPVASP--------------FHSHLLVPASDLIN------KDLVK 445
Query: 1008 HGFVVDSK-----------GKKMSKSKGNIIKPQKLCNLFGAEILRL---WVASTDYSKD 1053
+ ++K G + G+I +++ + I+RL W +T +
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS--ERIVDC----IIRLPVKWETTTQFK-- 497
Query: 1054 LSISNEIL-------NRVVE-TYRRIRNT-LRFLLANTSDFNPN 1088
+ IL + + T+R T +R ++A T D NP+
Sbjct: 498 ---ATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 57.4 bits (138), Expect = 8e-08
Identities = 118/772 (15%), Positives = 206/772 (26%), Gaps = 326/772 (42%)
Query: 1558 ETASLVALAILNGELSKREPGWI---KKWQEKKIYHQIRK---ASINRP--KFILHDGPP 1609
+ S L + +G L E + + I Q+++ + P F D P
Sbjct: 2 DAYSTRPLTLSHGSL---EHVLLVPTASFF---IASQLQEQFNKILPEPTEGFAADD-EP 54
Query: 1610 YANGDI------HIGHAVNK--------ILKDIIVKFYNMDGFDAQYVPGYDCH----GM 1651
++ ++ V +L + F+ Y+ G D H +
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL------TEFENCYLEGNDIHALAAKL 108
Query: 1652 PIEIQIEKLYGKNLSPIEIQN--KARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLN 1709
E + K L I+N AR +A +++ NS
Sbjct: 109 LQENDTTLVKTKEL----IKNYITARIMAKRPFDKKS-------------NS----ALFR 147
Query: 1710 EANELRA-----FGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGF-- 1762
E A FG G G + F+ E + Y Y
Sbjct: 148 AVGEGNAQLVAIFG-----G---QG--NTDDYFE----------ELRDLYQ--TYHVLVG 185
Query: 1763 SFSEPEKIKSIFN-LKNLPS---------GKGY-IVIWTSTPWTIPANQALHVHPEFDYA 1811
IK L L +G I+ W P P L
Sbjct: 186 DL-----IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL------LSI 234
Query: 1812 LVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRL 1871
+ PL+ ++ + + K + + L
Sbjct: 235 PISC----PLIGVIQL-------------AHYVVTAKLLGFTPGELRSYLK--------- 268
Query: 1872 SPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFG 1931
G G+V +A A I +F +
Sbjct: 269 -----G---ATGHSQGLV-TAVA-------------------IAETDSWESFFVS----- 295
Query: 1932 GMSIWKASKLICSYLKKSKTLFNI-----EMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 1986
K I LF I E + ++ + P I +L+ N +
Sbjct: 296 ------VRKAI-------TVLFFIGVRCYEAYPNTSL------PPSILEDSLE---NNEG 333
Query: 1987 IP------KNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIA 2040
+P N + + + N P+ + + S++ N
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTN--SHLPAGKQVEI-SLV-NGAK-------------N 376
Query: 2041 FFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWF 2100
+ SG P++L + L +K K+ LD
Sbjct: 377 LVV---SG--PPQSLYGLNLTLRKA-------------------------KAPSGLD--- 403
Query: 2101 DSGITHQTVIRGSHKK---QLIF-----PADLYLEGSDQHRGWFHSSLL---TSIILNKS 2149
Q+ I S +K F P FHS LL + +I
Sbjct: 404 ------QSRIPFSERKLKFSNRFLPVASP--------------FHSHLLVPASDLIN--- 440
Query: 2150 APYKALLTHGFVVDSK-----------GKKMSKSKGNIIKPQKLCNLFGAEILRL---WV 2195
K L+ + ++K G + G+I +++ + I+RL W
Sbjct: 441 ---KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS--ERIVDC----IIRLPVKWE 491
Query: 2196 ASTDYSKDLSISNEIL-------NRVVE-TYRRIRNT-LRFLLANTSDFNPN 2238
+T + + IL + + T+R T +R ++A T D NP+
Sbjct: 492 TTTQFK-----ATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 50.4 bits (120), Expect = 9e-06
Identities = 93/577 (16%), Positives = 167/577 (28%), Gaps = 217/577 (37%)
Query: 181 EKLLKSFFIKRRNFVKNKSIN-----------------IKMLRFYYPIPFIIGQYLYLPD 223
L F +++ I+ ++++ Y + + P
Sbjct: 85 NLCLTEF---ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR----PF 137
Query: 224 NIVNHLNVLRVKYKNTIILFNGFGG-----EYIAKLISIKKKILIQIISFLFREI-ELPY 277
+ ++ + R + L FGG +Y F E+ +L Y
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-------------------FEELRDL-Y 177
Query: 278 TI--TLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIII 335
LV L I+ S E + +I L+ E++ +
Sbjct: 178 QTYHVLVGDL---------IKFSAET----LSELIRTT----LDAEKVFTQ--------- 211
Query: 336 SATEQSGRNIL-----PVLAPNIYFNNWLIS-KISCARILLSPRGRKKLSCWANNQSPQE 389
G NIL P P+ + L+S ISC I + ++ +P E
Sbjct: 212 ------GLNILEWLENPSNTPDKDY---LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 390 V-ELLIGPEG-------------GFTEKE-ENLAYECGVIILSLGKRILRTETASLVALA 434
+ L G G + + + ++ +G R E +L
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR--CYEAYPNTSLP 320
Query: 435 ILNGVWGEIKASINRPKFILH-DGPPYANGDIHIGHAVNKIL---KDIIVKFYNMDGFDA 490
+ + ++ + P +L ++ N L K + + N G
Sbjct: 321 -PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK-TNSHLPAGKQVEISLVN--GAK- 375
Query: 491 QYVPGYDCHGMPIEIQIEKLYGKNLS------PIEI-QNKA----RAL------------ 527
V G P + LYG NL+ P + Q++ R L
Sbjct: 376 NLV----VSGPP-----QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 528 --------AYEKIEQQKMDFMRLGILGEWDNS------YKTMDFLNEANELRAFGIIFKK 573
A + I + D ++ + ++ Y T D ++LR
Sbjct: 427 FHSHLLVPASDLINK---DLVKNNV--SFNAKDIQIPVYDTFD----GSDLRVL-----S 472
Query: 574 GYVYHGL------KPVNWCFDCKSALAEAEIEYKKKY--DFSIYVGFSFSEPEKIKSIFN 625
G + + PV W E ++K + DF G P +
Sbjct: 473 GSISERIVDCIIRLPVKW---------ETTTQFKATHILDF----G-----PGGASGLGV 514
Query: 626 L--KNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDY 660
L +N G G VI T L ++P+ DY
Sbjct: 515 LTHRNK-DGTGVRVIVAGT---------LDINPDDDY 541
Score = 48.5 bits (115), Expect = 3e-05
Identities = 114/740 (15%), Positives = 216/740 (29%), Gaps = 286/740 (38%)
Query: 1157 NSHARRSAQTSIWH--INQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYK 1214
++++ R ++ H + LL + F + + F+
Sbjct: 2 DAYSTRP--LTLSHGSLEHVLL--VPTASFFIASQLQEQFNKI----------------- 40
Query: 1215 LPKVYNSK----------KLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKIN 1264
LP+ +L+ K++ V +E Q + +L +
Sbjct: 41 LPEPTEGFAADDEPTTPAELVGKFL------GYVSSLVEP-------SKVGQFDQVLNL- 86
Query: 1265 KLDFEILNEFGEELKFFL-------LTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHYQ 1317
L EF +L L + + L + +IK Y
Sbjct: 87 -----CLTEFENC---YLEGNDIHALAAKLLQENDTTLVKTKELIK--NY--------IT 128
Query: 1318 ADVGERDDYPDLCNRCFNN-----LFEPCAMCAGAIIHVRLGEI-IYGTPSFKTGACGSI 1371
A + + R F+ LF V G + F G G+
Sbjct: 129 ARI--------MAKRPFDKKSNSALFR----------AVGEGNAQLVAI--F--GGQGNT 166
Query: 1372 INLFQE-KKLNHHT-------ILTGGVMQKQCEKLLKSFFIKRRNFVK--NKIQAL--PE 1419
+ F+E + L + T ++ + +L+++ + F + N ++ L P
Sbjct: 167 DDYFEELRDL-YQTYHVLVGDLIK--FSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 1420 NR-KFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWK----NIIISATEQSG 1474
N D ++ + P+I +IQL + + K + + +
Sbjct: 224 NTPDKDYLLSIPISC------PLI---GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 1475 RNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWAN--NQSPQEVELL--IG--- 1527
+ ++ +A I+ W + + + +L IG
Sbjct: 275 QGLVTAVA------------IAET------------DSWESFFVSVRKAITVLFFIGVRC 310
Query: 1528 ----PEGGFTEK--EENLAYECGVI--ILSLGKRILRTETASLVALAILNGELSKREPGW 1579
P E++L GV +LS+ + + + V N L
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSI-SNLTQEQVQDYVNK--TNSHLP------ 361
Query: 1580 IKKWQEKKIYHQIRKASINRPK-FILHDGPP---YA-NGDIHIGHAVNKILKDII----- 1629
K++ I + +N K ++ GPP Y N + A + + + I
Sbjct: 362 ----AGKQVE--I--SLVNGAKNLVV-SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 1630 -VKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARAL--AYEKIEQQK 1686
+KF N F P H S + L A + I +
Sbjct: 413 KLKFSN--RFLPVASP---FH----------------SHL--------LVPASDLINK-- 441
Query: 1687 MDFMRLGILGEWDNS------YKTMDFLNEANELRAFGIIFKKGYVYHGL------KPVN 1734
D ++ + ++ Y T D ++LR G + + PV
Sbjct: 442 -DLVKNNV--SFNAKDIQIPVYDTFD----GSDLRVL-----SGSISERIVDCIIRLPVK 489
Query: 1735 WCFDCKSALAEAEIEYKKKY--DFSIYVGFSFSEPEKIKSIFNL--KNLPSGKGYIVIWT 1790
W E ++K + DF G P + L +N G G VI
Sbjct: 490 W---------ETTTQFKATHILDF----G-----PGGASGLGVLTHRNK-DGTGVRVIVA 530
Query: 1791 STPWTIPANQALHVHPEFDY 1810
T L ++P+ DY
Sbjct: 531 GT---------LDINPDDDY 541
Score = 46.2 bits (109), Expect = 2e-04
Identities = 45/303 (14%), Positives = 87/303 (28%), Gaps = 105/303 (34%)
Query: 1186 TSEEAWSIF--SDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQ-KL 1242
TS+ A ++ +D +F G +I + P + + + K+IR
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSI-LDIVINNPV---NLTIHFGGEKGKRIRENYSAMIF 1693
Query: 1243 EKIRSTGIIGSSLQAEIILKINKLDFEILNEFG--EELKF--F----LLTSSVSLFQIKN 1294
E I + + EI F L F L + F+
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFR-----SEKGLLSATQFTQPALTLMEKAAFED-- 1746
Query: 1295 LSEECIIIKPSIYKKCNRCWHYQA--DVGERDDYPDLCNRCFNNLFEPCAMCAGA----- 1347
L + +I + + A +GE Y A+ + A
Sbjct: 1747 LKSKGLIPADATF----------AGHSLGE---Y--------------AALASLADVMSI 1779
Query: 1348 -----IIHVRLGEIIYGT-PSFKTG-------AC--GSIINLFQEKKLNHHTIL------ 1386
++ R G + P + G A G + F ++ L ++
Sbjct: 1780 ESLVEVVFYR-GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL--QYVVERVGKR 1836
Query: 1387 TGGVMQ--------KQ--C-------EKL---LKSFFIKRRNFVKNKIQALPENRKFDLI 1426
TG +++ +Q + + L FIK + I L ++ + +
Sbjct: 1837 TGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLN--FIKLQKI---DIIELQKSLSLEEV 1891
Query: 1427 IEK 1429
Sbjct: 1892 EGH 1894
Score = 43.9 bits (103), Expect = 8e-04
Identities = 83/471 (17%), Positives = 137/471 (29%), Gaps = 185/471 (39%)
Query: 874 RPDWTISRQRH------WGVPIAFFIH----KKS--GKLHPKTLEL---------IELIA 912
RP T+S H VP A F ++ L T EL+
Sbjct: 7 RP-LTLS---HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 913 KKIELNGIEIWQNLDIKEFLG--DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIF 970
K FLG V K V + +T F
Sbjct: 63 K-----------------FLGYVSSLVEPSKVGQFDQV-LNLCLTE-------------F 91
Query: 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAP-----------YKALLTHGFVVDSKGKKM 1019
YLEG+D H +L ++ A + K
Sbjct: 92 ENC-YLEGNDIH------ALAAKLLQENDTTLVKTKELIKNYITAR----IMAKRPFDKK 140
Query: 1020 SKS-------KGNIIKPQKLCNLFG---------AEILRLWVASTDYSKDL-SISNEILN 1062
S S +GN +L +FG E+ L+ DL S E L+
Sbjct: 141 SNSALFRAVGEGNA----QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 1063 RVVET-------YRRIRNTLRFLLANTSDFNPNINI---IKISDMVEIDKYAIINITNLQ 1112
++ T + + N L +L P+ + I IS +I + Q
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWL--ENPSNTPDKDYLLSIPIS-------CPLIGVI--Q 245
Query: 1113 KEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSH----ARRSAQTSI 1168
L+HY ++ +KL + + L+ L +S A A+T
Sbjct: 246 ---LAHY------VVTAKLLGFTPGE--------LRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 1169 WHINQSLLRLISPILSFT------SEEAW-------SIFSDKNFYIESGETIFTQLHYKL 1215
W +S + ++ EA+ SI D +E+ E + +
Sbjct: 289 W---ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED---SLENNEGVPS------ 336
Query: 1216 PKVYNSKKLLYKYMILKKIRSKVMQKLEK-IRST-GIIGSSLQAEIILKIN 1264
M+ I + ++++ + T + + Q EI L +N
Sbjct: 337 ------------PMLS--ISNLTQEQVQDYVNKTNSHLPAGKQVEISL-VN 372
Score = 43.9 bits (103), Expect = 8e-04
Identities = 83/471 (17%), Positives = 137/471 (29%), Gaps = 185/471 (39%)
Query: 2024 RPDWTISRQRH------WGVPIAFFIH----KKS--GKLHPKTLEL---------IELIA 2062
RP T+S H VP A F ++ L T EL+
Sbjct: 7 RP-LTLS---HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 2063 KKIELNGIEIWQNLDIKEFLG--DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIF 2120
K FLG V K V + +T F
Sbjct: 63 K-----------------FLGYVSSLVEPSKVGQFDQV-LNLCLTE-------------F 91
Query: 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAP-----------YKALLTHGFVVDSKGKKM 2169
YLEG+D H +L ++ A + K
Sbjct: 92 ENC-YLEGNDIH------ALAAKLLQENDTTLVKTKELIKNYITAR----IMAKRPFDKK 140
Query: 2170 SKS-------KGNIIKPQKLCNLFG---------AEILRLWVASTDYSKDL-SISNEILN 2212
S S +GN +L +FG E+ L+ DL S E L+
Sbjct: 141 SNSALFRAVGEGNA----QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 2213 RVVET-------YRRIRNTLRFLLANTSDFNPNINI---IKISDMVEIDKYAIINITNLQ 2262
++ T + + N L +L P+ + I IS +I + Q
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWL--ENPSNTPDKDYLLSIPIS-------CPLIGVI--Q 245
Query: 2263 KEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSH----ARRSAQTSI 2318
L+HY ++ +KL + + L+ L +S A A+T
Sbjct: 246 ---LAHY------VVTAKLLGFTPGE--------LRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 2319 WHINQSLLRLISPILSFT------SEEAW-------SIFSDKNFYIESGETIFTQLHYKL 2365
W +S + ++ EA+ SI D +E+ E + +
Sbjct: 289 W---ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED---SLENNEGVPS------ 336
Query: 2366 PKVYNSKKLLYKYMILKKIRSKVMQKLEK-IRST-GIIGSSLQAEIILKIN 2414
M+ I + ++++ + T + + Q EI L +N
Sbjct: 337 ------------PMLS--ISNLTQEQVQDYVNKTNSHLPAGKQVEISL-VN 372
Score = 37.7 bits (87), Expect = 0.057
Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 22/133 (16%)
Query: 2336 TSEEAWSIF--SDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQ-KL 2392
TS+ A ++ +D +F G +I + P + + + K+IR
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSI-LDIVINNPV---NLTIHFGGEKGKRIRENYSAMIF 1693
Query: 2393 EKIRSTGIIGSSLQAEIILKINKLDFEILNEFG--EELKF--F----LLTSSVSLFQIKN 2444
E I + + EI F L F L + F+
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFR-----SEKGLLSATQFTQPALTLMEKAAFED-- 1746
Query: 2445 LSEECIIIKPSIY 2457
L + +I + +
Sbjct: 1747 LKSKGLIPADATF 1759
Score = 36.6 bits (84), Expect = 0.16
Identities = 51/293 (17%), Positives = 92/293 (31%), Gaps = 87/293 (29%)
Query: 863 GKDRLKS-----MILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIEL 917
G D K+ + NR D + +G I + P L + K
Sbjct: 1632 GMDLYKTSKAAQDVWNRADN--HFKDTYGFSILDIVINN-----PVNLTIHFGGEK---- 1680
Query: 918 NGIEIWQNLD--IKEFLGDDAVNYKKSNDTLD-----VWF--DSGITHQT---------- 958
G I +N I E + D + +K ++ F + G+ T
Sbjct: 1681 -GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 959 ------VIRGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSI--ILN-KSAPYKAL 1005
+ K + + PAD G HS + L S+ +++ +S
Sbjct: 1740 EKAAFEDL----KSKGLIPADATFAG--------HSLGEYAALASLADVMSIESL---VE 1784
Query: 1006 LTH--GFVVDSKGKKMSKSKGNI----IKPQKLCNLFGAEILRLWV--ASTDYSKDLSIS 1057
+ G + + + N I P ++ F E L+ V + I
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 1058 NEILN----RVVETYRRIRNTLRFL--LANTSDFN--PNINIIKISDMVEIDK 1102
N N + V LR L + N +F I+II++ + +++
Sbjct: 1845 N--YNVENQQYV-----AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
Score = 36.6 bits (84), Expect = 0.16
Identities = 51/293 (17%), Positives = 92/293 (31%), Gaps = 87/293 (29%)
Query: 2013 GKDRLKS-----MILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIEL 2067
G D K+ + NR D + +G I + P L + K
Sbjct: 1632 GMDLYKTSKAAQDVWNRADN--HFKDTYGFSILDIVINN-----PVNLTIHFGGEK---- 1680
Query: 2068 NGIEIWQNLD--IKEFLGDDAVNYKKSNDTLD-----VWF--DSGITHQT---------- 2108
G I +N I E + D + +K ++ F + G+ T
Sbjct: 1681 -GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 2109 ------VIRGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSI--ILN-KSAPYKAL 2155
+ K + + PAD G HS + L S+ +++ +S
Sbjct: 1740 EKAAFEDL----KSKGLIPADATFAG--------HSLGEYAALASLADVMSIESL---VE 1784
Query: 2156 LTH--GFVVDSKGKKMSKSKGNI----IKPQKLCNLFGAEILRLWV--ASTDYSKDLSIS 2207
+ G + + + N I P ++ F E L+ V + I
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 2208 NEILN----RVVETYRRIRNTLRFL--LANTSDFN--PNINIIKISDMVEIDK 2252
N N + V LR L + N +F I+II++ + +++
Sbjct: 1845 N--YNVENQQYV-----AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
Score = 35.4 bits (81), Expect = 0.33
Identities = 36/223 (16%), Positives = 68/223 (30%), Gaps = 75/223 (33%)
Query: 2 LDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKN-------ML------------ 42
R+ I + F+I + N+ + ++ SL+N ML
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL-EDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 43 -IETDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTA-HAEIIA 100
+ + +L P + +++L+ G NLV+S G P + + +
Sbjct: 352 YVNKTNSHL-PAGKQVEISLVNG---------AKNLVVS-GP--------PQSLYGLNLT 392
Query: 101 LR--MASKLLNNYR--FSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTP---SFKTGAC 153
LR A L+ R FS+ K+ R + +P A
Sbjct: 393 LRKAKAPSGLDQSRIPFSER-KL-------------KFSNRFLPV--ASPFHSHLLVPAS 436
Query: 154 GSIIN-------LFQEKKLN---HHTILTGGVMQKQCEKLLKS 186
I F K + + T G ++ + +
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTF-DGSDLRVLSGSISER 478
Score = 35.0 bits (80), Expect = 0.39
Identities = 40/273 (14%), Positives = 78/273 (28%), Gaps = 100/273 (36%)
Query: 3 DVAREIIE---------LGFYISFSGIVT---------F---KNSKILQKVM-------- 33
A+++ GF S IV F K +I +
Sbjct: 1640 KAAQDVWNRADNHFKDTYGF--SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIV 1697
Query: 34 -GSISLKNMLIETDSPYLSPI---PHRAKL--------ALIAGEVPVGAVLVKNNLVI-- 79
G + + + E + S + L AL E L L+
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSE-KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 80 ------SYG-YNQQITRNDPTA---HAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMC 129
S G Y A A+++++ +++ YR ++ V +
Sbjct: 1757 ATFAGHSLGEY---------AALASLADVMSIESLVEVVF-YR-GMTMQVAVPRDELGRS 1805
Query: 130 AGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQ--------KQ-- 179
+I + G + SF A ++ ++ TG +++ +Q
Sbjct: 1806 NYGMIAINPGRVA---ASFSQEALQYVVERVGKR--------TGWLVEIVNYNVENQQYV 1854
Query: 180 C-------EKLLKSFFIKRRNFVKNKSINIKML 205
+ + NF+K + I+I L
Sbjct: 1855 AAGDLRALDTVTNVL-----NFIKLQKIDIIEL 1882
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 59.2 bits (144), Expect = 1e-08
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 14/122 (11%)
Query: 948 VWFDSGITHQTVI---RGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILNKSA 1000
VW D+ + T + + ++ +PA+ ++ G D R FH+ + L S L
Sbjct: 250 VWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISR--FHAVYWPAFLMSAQL---P 304
Query: 1001 PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNE 1059
K + HGF+ ++G+KMSKS GN+I P +L +G + LR ++ + +D S S+E
Sbjct: 305 LPKRVFAHGFLF-NRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHE 363
Query: 1060 IL 1061
+
Sbjct: 364 AI 365
Score = 59.2 bits (144), Expect = 1e-08
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 14/122 (11%)
Query: 2098 VWFDSGITHQTVI---RGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILNKSA 2150
VW D+ + T + + ++ +PA+ ++ G D R FH+ + L S L
Sbjct: 250 VWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISR--FHAVYWPAFLMSAQL---P 304
Query: 2151 PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNE 2209
K + HGF+ ++G+KMSKS GN+I P +L +G + LR ++ + +D S S+E
Sbjct: 305 LPKRVFAHGFLF-NRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHE 363
Query: 2210 IL 2211
+
Sbjct: 364 AI 365
Score = 52.3 bits (126), Expect = 2e-06
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y NG HIGHA I D + +F ++G D ++ G D HG+ + K + ++P +
Sbjct: 35 YPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARK---EGITPRD 91
Score = 52.3 bits (126), Expect = 2e-06
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y NG HIGHA I D + +F ++G D ++ G D HG+ + K + ++P +
Sbjct: 35 YPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARK---EGITPRD 91
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA
ligase metrs, methionine, translation, ATP-binding; HET:
ME8; 2.00A {Leishmania major}
Length = 564
Score = 58.5 bits (142), Expect = 2e-08
Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 35/201 (17%)
Query: 948 VWFD------------SGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS----SLL 991
VW D + H +PAD+++ G D + FH+ + L
Sbjct: 259 VWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILK--FHAIYWPAFL 316
Query: 992 TSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDY 1050
S L + L++HG+ KK+SKS GN P + FG + L+ ++ +++
Sbjct: 317 MSAEL---PLPERLVSHGWWT-KDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNF 372
Query: 1051 SKDLSISNEILNRVVETYRRIR----NTLRFLLANTSDF--NPNINIIKISDMVEIDKYA 1104
D S++ + R+ +TL L++ N N + ++ E DK
Sbjct: 373 QDDGDYSDKNM------VARLNGELADTLGNLVSRCVAPKINVNGMWPEPAEYSESDKTL 426
Query: 1105 IINITNLQKEILSHYRMYEFH 1125
I ++ NL + +Y + +
Sbjct: 427 IASLNNLAGTVDHYYCLPDIQ 447
Score = 58.5 bits (142), Expect = 2e-08
Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 35/201 (17%)
Query: 2098 VWFD------------SGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS----SLL 2141
VW D + H +PAD+++ G D + FH+ + L
Sbjct: 259 VWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILK--FHAIYWPAFL 316
Query: 2142 TSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDY 2200
S L + L++HG+ KK+SKS GN P + FG + L+ ++ +++
Sbjct: 317 MSAEL---PLPERLVSHGWWT-KDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNF 372
Query: 2201 SKDLSISNEILNRVVETYRRIR----NTLRFLLANTSDF--NPNINIIKISDMVEIDKYA 2254
D S++ + R+ +TL L++ N N + ++ E DK
Sbjct: 373 QDDGDYSDKNM------VARLNGELADTLGNLVSRCVAPKINVNGMWPEPAEYSESDKTL 426
Query: 2255 IINITNLQKEILSHYRMYEFH 2275
I ++ NL + +Y + +
Sbjct: 427 IASLNNLAGTVDHYYCLPDIQ 447
Score = 50.4 bits (121), Expect = 6e-06
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y N HIGH + ++ D++ +++ + G + + G D HG + K + +SP++
Sbjct: 36 YVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAK---QGVSPMD 92
Score = 50.4 bits (121), Expect = 6e-06
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y N HIGH + ++ D++ +++ + G + + G D HG + K + +SP++
Sbjct: 36 YVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAK---QGVSPMD 92
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis,
ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A
{Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 58.0 bits (141), Expect = 3e-08
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
Query: 948 VWFD------SGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILN 997
VW D +G+ S ++ +PADL++ G D R FH+ + L S L
Sbjct: 238 VWVDALTNYLTGVGFPDTESESFRR--YWPADLHMIGKDIIR--FHTVYWPAFLMSAGL- 292
Query: 998 KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 1056
K + HG+++ ++G+KMSKS GN++ P L + FG + +R ++ + +D S
Sbjct: 293 --PLPKRIFAHGWLL-NRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSY 349
Query: 1057 SNEIL 1061
+ + +
Sbjct: 350 NEDAI 354
Score = 58.0 bits (141), Expect = 3e-08
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
Query: 2098 VWFD------SGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILN 2147
VW D +G+ S ++ +PADL++ G D R FH+ + L S L
Sbjct: 238 VWVDALTNYLTGVGFPDTESESFRR--YWPADLHMIGKDIIR--FHTVYWPAFLMSAGL- 292
Query: 2148 KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 2206
K + HG+++ ++G+KMSKS GN++ P L + FG + +R ++ + +D S
Sbjct: 293 --PLPKRIFAHGWLL-NRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSY 349
Query: 2207 SNEIL 2211
+ + +
Sbjct: 350 NEDAI 354
Score = 52.3 bits (126), Expect = 2e-06
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y NG HIGHA I D I +F +DG+D +Y+ G D HG + K + + E
Sbjct: 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAK---EGIPAAE 78
Score = 52.3 bits (126), Expect = 2e-06
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y NG HIGHA I D I +F +DG+D +Y+ G D HG + K + + E
Sbjct: 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAK---EGIPAAE 78
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism,
nucleotide biosynthesis, zinc, hexamer, hydrolase,
metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Length = 178
Score = 54.7 bits (132), Expect = 3e-08
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 27/98 (27%)
Query: 67 PVGAVLV-KNNLVISYGYN-------------QQITRNDP------TAHAEIIALRMASK 106
VGA +V N ++ GYN ++ N HAE+ A+
Sbjct: 33 QVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAI----- 87
Query: 107 LLNNYRFS-KNYKIYVTLEPCAMCAGAIIHVRLGEIIY 143
+N K +YV L PC CA II + E+I+
Sbjct: 88 -MNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEVIF 124
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella
burnetii}
Length = 462
Score = 52.5 bits (127), Expect = 1e-06
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 1009 GFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 1067
G + ++ +KMSKS GNII ++ E+LR ++ S Y LS S E L
Sbjct: 261 GLLEIN--KEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLA 318
Query: 1068 YRRIRNTLR 1076
R LR
Sbjct: 319 LERFYLALR 327
Score = 52.5 bits (127), Expect = 1e-06
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 2159 GFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 2217
G + ++ +KMSKS GNII ++ E+LR ++ S Y LS S E L
Sbjct: 261 GLLEIN--KEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLA 318
Query: 2218 YRRIRNTLR 2226
R LR
Sbjct: 319 LERFYLALR 327
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 52.2 bits (126), Expect = 1e-06
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 1009 GFV-VDSKGKKMSKSKGNIIK-PQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 1066
G + D G KMSKS+GN++ Q +RL + S Y +D SNE+L+
Sbjct: 283 GMIGWD--GHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDEANA 340
Query: 1067 TYRRIRNTLR 1076
R R+
Sbjct: 341 RLARWRSATA 350
Score = 52.2 bits (126), Expect = 1e-06
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 2159 GFV-VDSKGKKMSKSKGNIIK-PQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 2216
G + D G KMSKS+GN++ Q +RL + S Y +D SNE+L+
Sbjct: 283 GMIGWD--GHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDEANA 340
Query: 2217 TYRRIRNTLR 2226
R R+
Sbjct: 341 RLARWRSATA 350
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 51.5 bits (124), Expect = 3e-06
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 1009 GFV-VDSKGKKMSKSKGNIIKPQKLCN-LFGAEILRLWVASTDYSKDLSISNEILNRVVE 1066
F+ +D KMSKS+GN I + L + F R ++ Y L S + L
Sbjct: 291 EFLIMD--YNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKI 348
Query: 1067 TYRRIRNTLRFLLANTSDFNPN 1088
+ N L + + + N
Sbjct: 349 ARENLINKLSYFYESLDPVDLN 370
Score = 51.5 bits (124), Expect = 3e-06
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 2159 GFV-VDSKGKKMSKSKGNIIKPQKLCN-LFGAEILRLWVASTDYSKDLSISNEILNRVVE 2216
F+ +D KMSKS+GN I + L + F R ++ Y L S + L
Sbjct: 291 EFLIMD--YNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKI 348
Query: 2217 TYRRIRNTLRFLLANTSDFNPN 2238
+ N L + + + N
Sbjct: 349 ARENLINKLSYFYESLDPVDLN 370
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli,
ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1
PDB: 1li7_A 1u0b_B
Length = 461
Score = 51.0 bits (123), Expect = 4e-06
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1009 GFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 1067
G V VD +KMSKS GN + + + AE +R ++ S Y L+ S E L +
Sbjct: 258 GMVMVD--REKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAA 315
Query: 1068 YRRIRNTLRFL 1078
R+ LR
Sbjct: 316 LERLYTALRGT 326
Score = 51.0 bits (123), Expect = 4e-06
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 2159 GFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 2217
G V VD +KMSKS GN + + + AE +R ++ S Y L+ S E L +
Sbjct: 258 GMVMVD--REKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAA 315
Query: 2218 YRRIRNTLRFL 2228
R+ LR
Sbjct: 316 LERLYTALRGT 326
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN;
2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Length = 193
Score = 43.4 bits (102), Expect = 3e-04
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 93 TAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTP 146
HAE+ A+ A++ ++ + +YVTL PC CA AI + +++Y
Sbjct: 102 EIHAELNAILFAAENGSS---IEGATMYVTLSPCPDCAKAIAQSGIKKLVYCET 152
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus,
translation, amino acid, structural genomics; 1.70A
{Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Length = 147
Score = 40.1 bits (95), Expect = 0.002
Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 55/184 (29%)
Query: 632 GKGYIVIWTSTPWTIPANQALHVHPEFD--YALVHIKNDPPLLLILAFNLVKSCLKKFGF 689
G G+I I T P T+ A+QA+ VHPE D Y
Sbjct: 15 GGGFIEIATVRPETVFADQAIAVHPE-DERYR---------------------------- 45
Query: 690 KGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIED 749
+++G K ++ PL+ + I PI + D GTG + PA+ D
Sbjct: 46 --HLLG--KRARI-------PLTEVWI------PILADPAVEKDFGTGALKVTPAHDPLD 88
Query: 750 FLIFKKQNMKDSDIINPVMDDG--NFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEM 807
+ I ++ +K +IN +G G+ ++A + +++ L E
Sbjct: 89 YEIGERHGLKPVSVIN---LEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEE- 144
Query: 808 FEHS 811
+++
Sbjct: 145 -DYT 147
Score = 40.1 bits (95), Expect = 0.002
Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 55/184 (29%)
Query: 1782 GKGYIVIWTSTPWTIPANQALHVHPEFD--YALVHIKNDPPLLLILAFNLVKSCLKKFGF 1839
G G+I I T P T+ A+QA+ VHPE D Y
Sbjct: 15 GGGFIEIATVRPETVFADQAIAVHPE-DERYR---------------------------- 45
Query: 1840 KGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIED 1899
+++G K ++ PL+ + I PI + D GTG + PA+ D
Sbjct: 46 --HLLG--KRARI-------PLTEVWI------PILADPAVEKDFGTGALKVTPAHDPLD 88
Query: 1900 FLIFKKQNMKDSDIINPVMDDG--NFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEM 1957
+ I ++ +K +IN +G G+ ++A + +++ L E
Sbjct: 89 YEIGERHGLKPVSVIN---LEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEE- 144
Query: 1958 FEHS 1961
+++
Sbjct: 145 -DYT 147
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI-
2, protein structure initiative; 2.60A {Vibrio cholerae
o1 biovar eltor str} SCOP: c.116.1.7
Length = 208
Score = 36.1 bits (83), Expect = 0.094
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 1531 GFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGELSKREPGW 1579
+K N GV +SLG ++L + +++ E+ +E GW
Sbjct: 164 PMPKKSGNSMKRLGVEKISLGPKMLFASQ----CVTLIHNEIDHQEAGW 208
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 33.2 bits (76), Expect = 0.19
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 15/53 (28%)
Query: 1311 NRCWHYQ-----------ADVG--ERDDYPDLCNRCFNNLFEP-CAMCAGAII 1349
NR WH A+ +D+ LCN+C P C C AI+
Sbjct: 26 NRFWHDTCFRCAKCLHPLANETFVAKDNKI-LCNKCTTREDSPKCKGCFKAIV 77
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus
musculus} SCOP: g.44.1.6
Length = 52
Score = 31.2 bits (71), Expect = 0.32
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 10/33 (30%)
Query: 1310 CNRCWHYQADVGER------DDYPDLCNRCFNN 1336
CN C + V R +DY DLC C+N
Sbjct: 9 CNEC---KHHVETRWHCTVCEDY-DLCINCYNT 37
Score = 31.2 bits (71), Expect = 0.32
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 10/33 (30%)
Query: 2460 CNRCWHYQADVGER------DDYPDLCNRCFNN 2486
CN C + V R +DY DLC C+N
Sbjct: 9 CNEC---KHHVETRWHCTVCEDY-DLCINCYNT 37
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 31.6 bits (72), Expect = 0.32
Identities = 3/24 (12%), Positives = 5/24 (20%), Gaps = 1/24 (4%)
Query: 1322 ERDDYPDLCNRCFNNLFEPCAMCA 1345
+ C C+ E
Sbjct: 50 AVERRA-YCEGCYVATLESGPSSG 72
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 32.0 bits (73), Expect = 0.33
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 13/42 (30%)
Query: 1309 KCNRC-------WHYQADVGERDDYPDLCNRCFNNLFEPCAM 1343
C +C Y E + C F LF PC +
Sbjct: 41 VCAQCFQQFPEGLFY-----EFEGRK-YCEHDFQMLFAPCWI 76
>3dmo_A Cytidine deaminase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
hydrolase; 1.60A {Burkholderia pseudomallei}
Length = 138
Score = 33.3 bits (76), Expect = 0.39
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 67 PVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLE-- 124
VGA LV N+ + +G N + AE AL A L YR + I V E
Sbjct: 33 KVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSA--LAAGYRPGEFAAIAVVGETH 90
Query: 125 ----PCAMC 129
PC C
Sbjct: 91 GPIAPCGAC 99
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 33.3 bits (76), Expect = 1.2
Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 21/131 (16%)
Query: 1569 NGELSK------REPGWIKKWQEKKIY--HQIRKASINRPKFILHD--GPPYANGDIHIG 1618
G + REP K Y +++ L + G Y GD+ +
Sbjct: 561 KGVFRELYTAYSREPD------RPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMA 614
Query: 1619 HAVNKILKDIIVKFYNMDGFDAQ-YVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARAL 1677
V K ++ I+ + + DA ++ + ++G L E+ N+ R+
Sbjct: 615 ADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNR---YHED-IFGVTLRTYEVTNRLRSE 670
Query: 1678 AYEKIEQQKMD 1688
+ IE+ K D
Sbjct: 671 SIAFIEESKKD 681
Score = 33.3 bits (76), Expect = 1.4
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 463 GDIHIGHAVNKILKDIIVKFYNMDGFDAQ-YVPGYDCHGMPIEIQIEKLYGKNLSPIEIQ 521
GD+ + V K ++ I+ + + DA ++ + ++G L E+
Sbjct: 609 GDVTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNR---YHED-IFGVTLRTYEVT 664
Query: 522 NKARALAYEKIEQQKMD 538
N+ R+ + IE+ K D
Sbjct: 665 NRLRSESIAFIEESKKD 681
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 32.5 bits (75), Expect = 1.9
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 1016 GKKMSKSKGNII 1027
G+KMSKS GNII
Sbjct: 203 GRKMSKSYGNII 214
Score = 32.5 bits (75), Expect = 1.9
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 2166 GKKMSKSKGNII 2177
G+KMSKS GNII
Sbjct: 203 GRKMSKSYGNII 214
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics,
PSI-2, protein structure initiative; HET: SAM; 1.85A
{Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Length = 197
Score = 31.6 bits (71), Expect = 2.1
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 1517 QSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGELSKRE 1576
Q P +IG G TE++E + + LSL L E + I + L + +
Sbjct: 141 QLPPNPLFVIGDHEGLTEEQEKVVERYAALKLSLSPLSLLAEQ----CVVIAHHHLDRLQ 196
>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin,
crystallography motility; 2.30A {Geobacillus
stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A*
2pgi_A
Length = 445
Score = 32.3 bits (74), Expect = 2.3
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 1213 YKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILN 1272
P Y+ + +K+ ++ + + GI GS L A I L N
Sbjct: 47 VDWPIRYDKNEFSR----IKQAAERIRNHSDALVVIGIGGSYLGARAA--IEALSHTFHN 100
Query: 1273 EFGEELKFFLLTSSVSLFQIKNLSEEC 1299
+ + + + ++S I +L +
Sbjct: 101 QMNDTTQIYFAGQNISSTYISHLLDVL 127
Score = 32.3 bits (74), Expect = 2.3
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 2363 YKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILN 2422
P Y+ + +K+ ++ + + GI GS L A I L N
Sbjct: 47 VDWPIRYDKNEFSR----IKQAAERIRNHSDALVVIGIGGSYLGARAA--IEALSHTFHN 100
Query: 2423 EFGEELKFFLLTSSVSLFQIKNLSEEC 2449
+ + + + ++S I +L +
Sbjct: 101 QMNDTTQIYFAGQNISSTYISHLLDVL 127
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Length = 323
Score = 31.9 bits (73), Expect = 2.5
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYK--ALLTHGFVVDSKGKKMSKSKGNII 1027
DL + G DQ + + + Y L +V G+KMS SKGN I
Sbjct: 171 VDLAVGGIDQRK-----IHMLARENLPRLGYSSPVCLHTPILVGLDGQKMSSSKGNYI 223
Score = 31.9 bits (73), Expect = 2.5
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 2122 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYK--ALLTHGFVVDSKGKKMSKSKGNII 2177
DL + G DQ + + + Y L +V G+KMS SKGN I
Sbjct: 171 VDLAVGGIDQRK-----IHMLARENLPRLGYSSPVCLHTPILVGLDGQKMSSSKGNYI 223
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 31.7 bits (73), Expect = 3.4
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 1016 GKKMSKSKGNII 1027
G KMSKS N I
Sbjct: 190 GAKMSKSYQNTI 201
Score = 31.7 bits (73), Expect = 3.4
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 2166 GKKMSKSKGNII 2177
G KMSKS N I
Sbjct: 190 GAKMSKSYQNTI 201
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION
binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Length = 190
Score = 30.6 bits (69), Expect = 4.7
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 92 PTAHAEIIALRMASKLLNNYRFSKNYKI--YVTLEPCAMCAGAII-------HVRL 138
AHAE + +L + + Y + YV+ PCA CA II ++RL
Sbjct: 61 AAAHAEEAFF---NTILPAFDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRL 113
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 29.3 bits (66), Expect = 6.2
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 8/47 (17%)
Query: 1309 KCNRCWHYQADVG----ERDDYPDLCNRCFNNLFEP---CAMCAGAI 1348
C+ C +VG + LC R + LF CA C I
Sbjct: 31 SCDLCGCRLGEVGRRLYYKLGRK-LCRRDYLRLFGQDGLCASCDKRI 76
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein
structure initiative; 2.20A {Burkholderia pseudomallei}
Length = 285
Score = 30.4 bits (69), Expect = 6.7
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 650 QALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGI 700
LHV P FD + + F V L+ G + ++GI GI
Sbjct: 16 AELHVSPTFDARDEAER-------RIGF--VADYLRTAGLRACVLGISGGI 57
Score = 30.4 bits (69), Expect = 6.7
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 1800 QALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGI 1850
LHV P FD + + F V L+ G + ++GI GI
Sbjct: 16 AELHVSPTFDARDEAER-------RIGF--VADYLRTAGLRACVLGISGGI 57
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.421
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 38,958,528
Number of extensions: 2464667
Number of successful extensions: 5371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5120
Number of HSP's successfully gapped: 203
Length of query: 2492
Length of database: 6,701,793
Length adjustment: 110
Effective length of query: 2382
Effective length of database: 3,630,483
Effective search space: 8647810506
Effective search space used: 8647810506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (29.2 bits)