RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15223
(2492 letters)
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 186 bits (473), Expect = 3e-51
Identities = 111/279 (39%), Positives = 161/279 (57%), Gaps = 21/279 (7%)
Query: 795 YLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN 854
+ S++ E+ H WR K P+I+R T QWF ++ K+ ++ AI
Sbjct: 185 WSPSSESSLAEAEIEY--PHDWRTKKPVIFRATPQWFASISKVRQDILD--------AIE 234
Query: 855 KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKK 914
F +WGK R+ +M+ +R +W ISRQR WGVP+ F + + K E + +A
Sbjct: 235 NTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTK--ETVNHVADL 292
Query: 915 IELNGIEIWQNLDIKEF-------LGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQ 967
+G IW + K+ G + K D +DVWFDSG +H+ V+ + +
Sbjct: 293 FAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLE--TRPE 350
Query: 968 LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNII 1027
L FPAD+YLEGSDQ+RGWF+SS+ TS+ +PYK LL+HGFV+D +GKKMSKS GN+I
Sbjct: 351 LSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVI 410
Query: 1028 KPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 1066
P ++ GA+I RLWV+STDY D+ IS+EIL + +
Sbjct: 411 VPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSD 449
Score = 186 bits (473), Expect = 3e-51
Identities = 111/279 (39%), Positives = 161/279 (57%), Gaps = 21/279 (7%)
Query: 1945 YLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN 2004
+ S++ E+ H WR K P+I+R T QWF ++ K+ ++ AI
Sbjct: 185 WSPSSESSLAEAEIEY--PHDWRTKKPVIFRATPQWFASISKVRQDILD--------AIE 234
Query: 2005 KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKK 2064
F +WGK R+ +M+ +R +W ISRQR WGVP+ F + + K E + +A
Sbjct: 235 NTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTK--ETVNHVADL 292
Query: 2065 IELNGIEIWQNLDIKEF-------LGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQ 2117
+G IW + K+ G + K D +DVWFDSG +H+ V+ + +
Sbjct: 293 FAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLE--TRPE 350
Query: 2118 LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNII 2177
L FPAD+YLEGSDQ+RGWF+SS+ TS+ +PYK LL+HGFV+D +GKKMSKS GN+I
Sbjct: 351 LSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVI 410
Query: 2178 KPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 2216
P ++ GA+I RLWV+STDY D+ IS+EIL + +
Sbjct: 411 VPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSD 449
Score = 152 bits (385), Expect = 1e-39
Identities = 86/189 (45%), Positives = 118/189 (62%), Gaps = 2/189 (1%)
Query: 1570 GELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDII 1629
G L +EP +KW + YH+ + + FILHDGPPYANG++H+GHA+NKILKD I
Sbjct: 18 GGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFI 77
Query: 1630 VKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK--NLSPIEIQNKARALAYEKIEQQKM 1687
V++ M GF A YVPG+D HG+PIE + K +S E + K + A E+IE QK
Sbjct: 78 VRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKK 137
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
DF RLG+ G++++ Y T+ EA ++R FG + KG +Y G KPV W +S+LAEAE
Sbjct: 138 DFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAE 197
Query: 1748 IEYKKKYDF 1756
IEY +
Sbjct: 198 IEYPHDWRT 206
Score = 125 bits (315), Expect = 1e-30
Identities = 78/167 (46%), Positives = 107/167 (64%), Gaps = 2/167 (1%)
Query: 442 EIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGM 501
++ + FILHDGPPYANG++H+GHA+NKILKD IV++ M GF A YVPG+D HG+
Sbjct: 40 ALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGL 99
Query: 502 PIEIQIEKLYGK--NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLN 559
PIE + K +S E + K + A E+IE QK DF RLG+ G++++ Y T+
Sbjct: 100 PIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEY 159
Query: 560 EANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 606
EA ++R FG + KG +Y G KPV W +S+LAEAEIEY +
Sbjct: 160 EAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYPHDWRT 206
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 183 bits (464), Expect = 5e-50
Identities = 74/280 (26%), Positives = 117/280 (41%), Gaps = 14/280 (5%)
Query: 793 CSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITA 852
Y + T + Y HCWR TP++Y T WFI ++ +
Sbjct: 178 VPYCPRCGTPLSSHEVALGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQ------ 231
Query: 853 INKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSG--KLHPKTLELIEL 910
P + R + N DW +SR R+WG P+ ++ + G + EL
Sbjct: 232 -EIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKAR 290
Query: 911 IAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI- 969
K + +D E ++ +DVW+DSG + + + +
Sbjct: 291 ATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVF 350
Query: 970 ---FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNI 1026
FPAD EG DQ RGWF+S ++L S +K ++ HG ++D KG+KMSKSKGN+
Sbjct: 351 RESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNV 410
Query: 1027 IKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVV 1065
+ P + FGA+ LR ++ D ++ V
Sbjct: 411 VDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETV 450
Score = 183 bits (464), Expect = 5e-50
Identities = 74/280 (26%), Positives = 117/280 (41%), Gaps = 14/280 (5%)
Query: 1943 CSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITA 2002
Y + T + Y HCWR TP++Y T WFI ++ +
Sbjct: 178 VPYCPRCGTPLSSHEVALGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQ------ 231
Query: 2003 INKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSG--KLHPKTLELIEL 2060
P + R + N DW +SR R+WG P+ ++ + G + EL
Sbjct: 232 -EIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKAR 290
Query: 2061 IAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI- 2119
K + +D E ++ +DVW+DSG + + + +
Sbjct: 291 ATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVF 350
Query: 2120 ---FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNI 2176
FPAD EG DQ RGWF+S ++L S +K ++ HG ++D KG+KMSKSKGN+
Sbjct: 351 RESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNV 410
Query: 2177 IKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVV 2215
+ P + FGA+ LR ++ D ++ V
Sbjct: 411 VDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETV 450
Score = 143 bits (362), Expect = 9e-37
Identities = 41/175 (23%), Positives = 81/175 (46%), Gaps = 7/175 (4%)
Query: 1572 LSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVK 1631
K E + W+ +KI+ + + P++ +++GPP ANG H+GHA + KD+ +
Sbjct: 10 FPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPR 69
Query: 1632 FYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQ 1684
+ M G+ A G+D HG+P+E+++EK G R + ++
Sbjct: 70 YKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKE 129
Query: 1685 QKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 1739
+ R+ + +++Y T++ + + +F +G +Y K V +C C
Sbjct: 130 WEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRC 184
Score = 118 bits (297), Expect = 2e-28
Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 7/155 (4%)
Query: 442 EIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGM 501
++ P++ +++GPP ANG H+GHA + KD+ ++ M G+ A G+D HG+
Sbjct: 30 SVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89
Query: 502 PIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKT 554
P+E+++EK G R + ++ + R+ + +++Y T
Sbjct: 90 PVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYAT 149
Query: 555 MDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 589
++ + + +F +G +Y K V +C C
Sbjct: 150 LEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRC 184
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 163 bits (413), Expect = 6e-43
Identities = 49/214 (22%), Positives = 80/214 (37%), Gaps = 11/214 (5%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W + W+EK R K + PY +GD+H+GH N + D++ +F M
Sbjct: 10 EAKWQRFWEEKGFMKAKDLPG-GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRM 68
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGIL 1695
G++ + G+D G+P E K + P + Y I Q K +GIL
Sbjct: 69 QGYEVLHPMGWDAFGLPAENAALKF---GVHPKDWT-------YANIRQAKESLRLMGIL 118
Query: 1696 GEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYD 1755
+WD T + F +++KG Y VNWC C++ LA ++ + +
Sbjct: 119 YDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWR 178
Query: 1756 FSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIW 1789
+ I + W
Sbjct: 179 HEDTPVEKRELEQWYLRITAYAERLLKDLEGLNW 212
Score = 147 bits (372), Expect = 1e-37
Identities = 45/203 (22%), Positives = 74/203 (36%), Gaps = 10/203 (4%)
Query: 437 NGVWGEIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 496
G R K + PY +GD+H+GH N + D++ +F M G++ + G+
Sbjct: 20 KGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGW 79
Query: 497 DCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD 556
D G+P E K + P + Y I Q K +GIL +WD T +
Sbjct: 80 DAFGLPAENAALKF---GVHPKDWT-------YANIRQAKESLRLMGILYDWDREVTTCE 129
Query: 557 FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSE 616
F +++KG Y VNWC C++ LA ++ + +
Sbjct: 130 PEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKREL 189
Query: 617 PEKIKSIFNLKNLPSGKGYIVIW 639
+ I + W
Sbjct: 190 EQWYLRITAYAERLLKDLEGLNW 212
Score = 68.1 bits (165), Expect = 8e-12
Identities = 35/260 (13%), Positives = 72/260 (27%), Gaps = 25/260 (9%)
Query: 803 FNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKN---EKKSLRESAITAINKIKFF 859
+ + S W P+++ ++ + K + + + ++
Sbjct: 225 GRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAH 284
Query: 860 PSWGKDRLKSM------------ILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLEL 907
P + + W R F +K+ P
Sbjct: 285 PEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMP----- 339
Query: 908 IELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQ 967
++ +E + + + +FL D K + F G+ G + +
Sbjct: 340 VDQYIGGVEHAVLHLLYSRFFTKFLHDL--GMVKVEEPFQGLFTQGMVLAWTDFGPVEVE 397
Query: 968 LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNII 1027
E + S+L + A + G + K MSKSKGN +
Sbjct: 398 --GSVVRLPEPTRIRLEIPESALSLEDVRKMGAELR-PHEDGTLHLWKPAVMSKSKGNGV 454
Query: 1028 KPQKLCNLFGAEILRLWVAS 1047
GA+I R+ +
Sbjct: 455 MVGPFVKEQGADIARITILF 474
Score = 68.1 bits (165), Expect = 8e-12
Identities = 35/260 (13%), Positives = 72/260 (27%), Gaps = 25/260 (9%)
Query: 1953 FNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKN---EKKSLRESAITAINKIKFF 2009
+ + S W P+++ ++ + K + + + ++
Sbjct: 225 GRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAH 284
Query: 2010 PSWGKDRLKSM------------ILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLEL 2057
P + + W R F +K+ P
Sbjct: 285 PEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMP----- 339
Query: 2058 IELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQ 2117
++ +E + + + +FL D K + F G+ G + +
Sbjct: 340 VDQYIGGVEHAVLHLLYSRFFTKFLHDL--GMVKVEEPFQGLFTQGMVLAWTDFGPVEVE 397
Query: 2118 LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNII 2177
E + S+L + A + G + K MSKSKGN +
Sbjct: 398 --GSVVRLPEPTRIRLEIPESALSLEDVRKMGAELR-PHEDGTLHLWKPAVMSKSKGNGV 454
Query: 2178 KPQKLCNLFGAEILRLWVAS 2197
GA+I R+ +
Sbjct: 455 MVGPFVKEQGADIARITILF 474
Score = 58.8 bits (141), Expect = 5e-09
Identities = 44/245 (17%), Positives = 82/245 (33%), Gaps = 30/245 (12%)
Query: 806 EMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKD 865
TP+ R QW++ + + K + +P K
Sbjct: 168 NEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLK---------DLEGLNWPEKVKA 218
Query: 866 RLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQN 925
++ I DW ISRQR+WG PI + G + EL L+ ++ I
Sbjct: 219 MQRAWIGRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGK 278
Query: 926 LDI-------KEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK--------QLIF 970
+ + K+ DT+D +FDS + + +
Sbjct: 279 SPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWM 338
Query: 971 PADLYLEGSDQ------HRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKG 1024
P D Y+ G + + +F L ++ P++ L T G V+ + +G
Sbjct: 339 PVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEG 398
Query: 1025 NIIKP 1029
++++
Sbjct: 399 SVVRL 403
Score = 58.8 bits (141), Expect = 5e-09
Identities = 44/245 (17%), Positives = 82/245 (33%), Gaps = 30/245 (12%)
Query: 1956 EMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKD 2015
TP+ R QW++ + + K + +P K
Sbjct: 168 NEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLK---------DLEGLNWPEKVKA 218
Query: 2016 RLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQN 2075
++ I DW ISRQR+WG PI + G + EL L+ ++ I
Sbjct: 219 MQRAWIGRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGK 278
Query: 2076 LDI-------KEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK--------QLIF 2120
+ + K+ DT+D +FDS + + +
Sbjct: 279 SPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWM 338
Query: 2121 PADLYLEGSDQ------HRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKG 2174
P D Y+ G + + +F L ++ P++ L T G V+ + +G
Sbjct: 339 PVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEG 398
Query: 2175 NIIKP 2179
++++
Sbjct: 399 SVVRL 403
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 273
Score = 156 bits (395), Expect = 7e-43
Identities = 85/276 (30%), Positives = 143/276 (51%), Gaps = 13/276 (4%)
Query: 1068 YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMI 1127
YR+IRNTLRF+L N +DFNP+ + I S+++E+D+Y + + +++Y +++ I
Sbjct: 1 YRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNI 60
Query: 1128 VSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTS 1187
++Q + + +L +FYLD KD LY +++SH RRS QT ++ I + +L++PIL T+
Sbjct: 61 YQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTA 120
Query: 1188 EEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRS 1247
EE WS + + L V + LL K+ +R V + LE R+
Sbjct: 121 EEVWS-------HTPHVKEESVHLADMPKVVEVDQALLDKWRTFMNLRDDVNRALETARN 173
Query: 1248 TGIIGSSLQAEIILKIN-KLDFEILNEFGEELKFFLLTSSVSLF-----QIKNLSEECII 1301
+IG SL+A++ + N K + + L + S V + Q I+
Sbjct: 174 EKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDIV 233
Query: 1302 IKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNL 1337
I+ + +KC RCW+Y D+G D+ LC RC +
Sbjct: 234 IEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVV 269
Score = 156 bits (395), Expect = 7e-43
Identities = 85/276 (30%), Positives = 143/276 (51%), Gaps = 13/276 (4%)
Query: 2218 YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMI 2277
YR+IRNTLRF+L N +DFNP+ + I S+++E+D+Y + + +++Y +++ I
Sbjct: 1 YRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNI 60
Query: 2278 VSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTS 2337
++Q + + +L +FYLD KD LY +++SH RRS QT ++ I + +L++PIL T+
Sbjct: 61 YQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTA 120
Query: 2338 EEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRS 2397
EE WS + + L V + LL K+ +R V + LE R+
Sbjct: 121 EEVWS-------HTPHVKEESVHLADMPKVVEVDQALLDKWRTFMNLRDDVNRALETARN 173
Query: 2398 TGIIGSSLQAEIILKIN-KLDFEILNEFGEELKFFLLTSSVSLF-----QIKNLSEECII 2451
+IG SL+A++ + N K + + L + S V + Q I+
Sbjct: 174 EKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDIV 233
Query: 2452 IKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNL 2487
I+ + +KC RCW+Y D+G D+ LC RC +
Sbjct: 234 IEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVV 269
>d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303
{Haemophilus influenzae [TaxId: 727]}
Length = 174
Score = 146 bits (368), Expect = 2e-40
Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 1/170 (0%)
Query: 274 ELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNI 333
E I L Q + + + I+KSVELGV +I P+ + RC ++L+ ER+ KK +W+ I
Sbjct: 2 ESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKI 61
Query: 334 IISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELL 393
I+A EQ GRNI+P + P + +W ++ L PR + V LL
Sbjct: 62 AIAACEQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSI-KTLPTIPAGGVRLL 120
Query: 394 IGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGVWGEI 443
IG EGG + +E + G + LGKR+LRTETASL A++ L +G++
Sbjct: 121 IGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQICFGDL 170
Score = 131 bits (330), Expect = 2e-35
Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
Q + + + I+KSVELGV +I P+ + RC ++L+ ER+ KK +W+ I I+A EQ
Sbjct: 10 GQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQC 69
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFT 1533
GRNI+P + P + +W ++ L PR + V LLIG EGG +
Sbjct: 70 GRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSI-KTLPTIPAGGVRLLIGSEGGLS 128
Query: 1534 EKEENLAYECGVIILSLGKRILRTETASLVALAILNGEL 1572
+E + G + LGKR+LRTETASL A++ L
Sbjct: 129 AQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQICF 167
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 148 bits (375), Expect = 1e-38
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 15/201 (7%)
Query: 1571 ELSKR------EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKI 1624
+L K EP W +KW + + +P F++ PP G +H+GHA++
Sbjct: 2 DLPKAYDPKSVEPKWAEKWAKNPFVANPKS---GKPPFVIFMPPPNVTGSLHMGHALDNS 58
Query: 1625 LKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG------KNLSPIEIQNKARALA 1678
L+D ++++ M GF+A ++PG D G+ ++ +E+L +L + +
Sbjct: 59 LQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWK 118
Query: 1679 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFD 1738
E RLG +W TMD AF + +G Y + VNWC
Sbjct: 119 EESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPR 178
Query: 1739 CKSALAEAEIEYKKKYDFSIY 1759
C++ L++ E+E + I
Sbjct: 179 CETTLSDLEVETCSRCGTPIE 199
Score = 143 bits (360), Expect = 1e-36
Identities = 64/265 (24%), Positives = 100/265 (37%), Gaps = 30/265 (11%)
Query: 810 HSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKS 869
C R TPI Y QW++ M + + K LR I F P K
Sbjct: 186 LEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRR------GDIAFVPERWKKVNMD 239
Query: 870 MILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIK 929
+ N DW ISRQ WG I + + ++ D
Sbjct: 240 WLENVKDWNISRQLWWGHQIPAWYCEDCQAVNV----------------PRPERYLEDPT 283
Query: 930 EFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI---FPADLYLEGSDQHRGWF 986
+ K+ D D WF S + + + + + + +P D+ + G D W
Sbjct: 284 SCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWV 343
Query: 987 HSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 1046
++ P+K +L HG V+D KG+KMSKSKGN+I P ++ +GA+ LR +
Sbjct: 344 SRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALI 403
Query: 1047 S-TDYSKDLSISNEILNRVVETYRR 1070
+D+ + +E R
Sbjct: 404 YLATGGQDIRLDLRW----LEMARN 424
Score = 143 bits (360), Expect = 1e-36
Identities = 64/265 (24%), Positives = 100/265 (37%), Gaps = 30/265 (11%)
Query: 1960 HSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKS 2019
C R TPI Y QW++ M + + K LR I F P K
Sbjct: 186 LEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRR------GDIAFVPERWKKVNMD 239
Query: 2020 MILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIK 2079
+ N DW ISRQ WG I + + ++ D
Sbjct: 240 WLENVKDWNISRQLWWGHQIPAWYCEDCQAVNV----------------PRPERYLEDPT 283
Query: 2080 EFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI---FPADLYLEGSDQHRGWF 2136
+ K+ D D WF S + + + + + + +P D+ + G D W
Sbjct: 284 SCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWV 343
Query: 2137 HSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196
++ P+K +L HG V+D KG+KMSKSKGN+I P ++ +GA+ LR +
Sbjct: 344 SRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALI 403
Query: 2197 S-TDYSKDLSISNEILNRVVETYRR 2220
+D+ + +E R
Sbjct: 404 YLATGGQDIRLDLRW----LEMARN 424
Score = 132 bits (332), Expect = 5e-33
Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 6/168 (3%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
+P F++ PP G +H+GHA++ L+D ++++ M GF+A ++PG D G+ ++ +
Sbjct: 32 GKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVV 91
Query: 508 EKLYG------KNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEA 561
E+L +L + + E RLG +W TMD
Sbjct: 92 ERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSR 151
Query: 562 NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIY 609
AF + +G Y + VNWC C++ L++ E+E + I
Sbjct: 152 AVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETCSRCGTPIE 199
>d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus
subtilis [TaxId: 1423]}
Length = 180
Score = 133 bits (336), Expect = 4e-36
Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 7/171 (4%)
Query: 274 ELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNI 333
ELP + + LP+ K + II+K ELG P R +++L++++ KKR RW I
Sbjct: 3 ELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKI 62
Query: 334 IISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKL-------SCWANNQS 386
A EQS RN +P + F L + +++ K + ++
Sbjct: 63 AKEAAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPK 122
Query: 387 PQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 437
+ ++ GPEGG TE E E + LG RILRTETA L AL+ ++
Sbjct: 123 GSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAIS 173
Score = 122 bits (306), Expect = 6e-32
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
LP+ K + II+K ELG P R +++L++++ KKR RW I A EQS
Sbjct: 11 ASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQS 70
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKL-------SCWANNQSPQEVELLI 1526
RN +P + F L + +++ K + ++ + ++
Sbjct: 71 YRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVF 130
Query: 1527 GPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGEL 1572
GPEGG TE E E + LG RILRTETA L AL+ ++ +
Sbjct: 131 GPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAISYQT 176
>d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575)
{Thermus thermophilus [TaxId: 274]}
Length = 162
Score = 132 bits (332), Expect = 1e-35
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Query: 274 ELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNI 333
E+ + L AL + K ++ + ELG IQP++T + + E K R + +
Sbjct: 2 EVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPK---EMGEGKLRRLRAV 58
Query: 334 IISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELL 393
+ A +QSGR ++P + P I + + +++ + L
Sbjct: 59 ALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLA-----LA 113
Query: 394 IGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGVWG 441
+GPEGGF E+E L G +SLG+RILR ETA+L LA+ G
Sbjct: 114 VGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEG 161
Score = 115 bits (290), Expect = 5e-30
Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
AL + K ++ + ELG IQP++T + + E K R + + + A +QS
Sbjct: 10 YVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPK---EMGEGKLRRLRAVALEAAKQS 66
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFT 1533
GR ++P + P I + + +++ + L +GPEGGF
Sbjct: 67 GRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLA-----LAVGPEGGFA 121
Query: 1534 EKEENLAYECGVIILSLGKRILRTETASLVALAILN 1569
E+E L G +SLG+RILR ETA+L LA+
Sbjct: 122 EEEVALLEARGFTPVSLGRRILRAETAALALLALCT 157
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex
aeolicus [TaxId: 63363]}
Length = 151
Score = 120 bits (301), Expect = 9e-32
Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
AK A GEVPVGA++VK +IS +N DPTAHAE++A++ A + LN +
Sbjct: 14 AKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYL-EG 72
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
++YVTLEPC MC+ A++ R+ ++I+ K G S+ N+ E LNH +
Sbjct: 73 CELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPL 132
Query: 177 QKQCEKLLKSFFIKRRN 193
++ +LL FF K RN
Sbjct: 133 -EEASELLSEFFKKLRN 148
Score = 76.0 bits (186), Expect = 2e-16
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 1299 CIIIKPSIYKKCNRCWHYQ----ADVGERDDYPDLCNRCFNNLFEPCAMCAGAIIHVRLG 1354
S+ + + H + + R + L EPC MC+ A++ R+
Sbjct: 36 ISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIE 95
Query: 1355 EIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408
++I+ K G S+ N+ E LNH + ++ +LL FF K RN
Sbjct: 96 KVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPL-EEASELLSEFFKKLRN 148
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas
europaea [TaxId: 915]}
Length = 189
Score = 114 bits (286), Expect = 3e-29
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
Query: 57 AKLALIAGEVPVGAVLVKNN--LVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS 114
+ + A P A + + + L+I+ G N+ + AHAEI+AL +A L+ + S
Sbjct: 37 VRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLS 96
Query: 115 K----NYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGS----IINLFQEKKLN 166
++ + EPC MC GA+I + ++ S A G +
Sbjct: 97 ADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEA 156
Query: 167 HHTILTGGVMQKQCEKLLKSFF 188
+T G+++ LL+ +
Sbjct: 157 RGITVTTGLLRDAACALLREYN 178
Score = 59.0 bits (142), Expect = 5e-10
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 5/105 (4%)
Query: 1304 PSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPS 1362
+ + + QA + D D C EPC MC GA+I + ++ S
Sbjct: 74 SAAHAEILALSLAQAKLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARS 133
Query: 1363 FKTGACGS----IINLFQEKKLNHHTILTGGVMQKQCEKLLKSFF 1403
A G + +T G+++ LL+ +
Sbjct: 134 DDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLREYN 178
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase
CodA {Agrobacterium tumefaciens [TaxId: 358]}
Length = 130
Score = 107 bits (267), Expect = 2e-27
Identities = 48/118 (40%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
A+ A EVP+GAVLV + VI+ N+ ND TAHAEI +RMA + L R
Sbjct: 14 ARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERL-PG 72
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGG 174
+YVTLEPC MCA AI R+ + YG K GA S + F + +H + G
Sbjct: 73 ADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSG 130
Score = 62.2 bits (150), Expect = 1e-11
Identities = 20/83 (24%), Positives = 27/83 (32%)
Query: 1307 YKKCNRCWHYQADVGERDDYPDLCNRCFNNLFEPCAMCAGAIIHVRLGEIIYGTPSFKTG 1366
+ E L EPC MCA AI R+ + YG K G
Sbjct: 48 DVTAHAEIAVIRMACEALGQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGG 107
Query: 1367 ACGSIINLFQEKKLNHHTILTGG 1389
A S + F + +H + G
Sbjct: 108 AVESGVRFFSQPTCHHAPDVYSG 130
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 194
Score = 108 bits (269), Expect = 6e-27
Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 603 KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYAL 662
K SIYV F +K + K + +IWT+TPWTIP+N A+ VHPE Y
Sbjct: 3 KRSASIYVAF------NVK---DDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQ 53
Query: 663 VHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLS 722
++ + ++ + V L + G +L + HP +R S
Sbjct: 54 YNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHP------FLDRES 107
Query: 723 PIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGG 782
+ GD++T D+GTG VH+AP +G +D+++ ++ + +I+P+ D G F F G
Sbjct: 108 LVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYEL---PVISPIDDKGVFTEEGGQFEG 164
Query: 783 MSIWKASKLICSYLKKSKTLFNIEMFEHSY 812
M KA+K + L + L ++ HSY
Sbjct: 165 MFYDKANKAVTDLLTEKGALLKLDFITHSY 194
Score = 108 bits (269), Expect = 6e-27
Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 1753 KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYAL 1812
K SIYV F +K + K + +IWT+TPWTIP+N A+ VHPE Y
Sbjct: 3 KRSASIYVAF------NVK---DDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQ 53
Query: 1813 VHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLS 1872
++ + ++ + V L + G +L + HP +R S
Sbjct: 54 YNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHP------FLDRES 107
Query: 1873 PIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGG 1932
+ GD++T D+GTG VH+AP +G +D+++ ++ + +I+P+ D G F F G
Sbjct: 108 LVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYEL---PVISPIDDKGVFTEEGGQFEG 164
Query: 1933 MSIWKASKLICSYLKKSKTLFNIEMFEHSY 1962
M KA+K + L + L ++ HSY
Sbjct: 165 MFYDKANKAVTDLLTEKGALLKLDFITHSY 194
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA
{Escherichia coli [TaxId: 562]}
Length = 156
Score = 106 bits (264), Expect = 9e-27
Identities = 64/137 (46%), Positives = 85/137 (62%), Gaps = 1/137 (0%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
AK A EVPVGAVLV NN VI G+N+ I R+DPTAHAEI+A L+ +
Sbjct: 18 AKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMA-LRQGGLVMQNYRLID 76
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
+YVTLEPC MCAGA+IH R+G +++G KTGA GS++++ +NH +T G++
Sbjct: 77 ATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGIL 136
Query: 177 QKQCEKLLKSFFIKRRN 193
+C LL FF RR
Sbjct: 137 ADECAALLSDFFRMRRQ 153
Score = 72.6 bits (177), Expect = 5e-15
Identities = 32/95 (33%), Positives = 47/95 (49%)
Query: 1314 WHYQADVGERDDYPDLCNRCFNNLFEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIIN 1373
G L + EPC MCAGA+IH R+G +++G KTGA GS+++
Sbjct: 59 IMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMD 118
Query: 1374 LFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408
+ +NH +T G++ +C LL FF RR
Sbjct: 119 VLHHPGMNHRVEITEGILADECAALLSDFFRMRRQ 153
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis
[TaxId: 1423]}
Length = 158
Score = 105 bits (262), Expect = 2e-26
Identities = 44/137 (32%), Positives = 61/137 (44%), Gaps = 2/137 (1%)
Query: 57 AKLALIAG-EVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSK 115
A + AG P GAV+VK+ +I+ G N T NDPTAHAE+ A+R A K+L Y+
Sbjct: 16 ACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQL-D 74
Query: 116 NYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGV 175
+ +Y + EPC MC GAI R + Y G + ++ T
Sbjct: 75 DCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPF 134
Query: 176 MQKQCEKLLKSFFIKRR 192
Q + L F R
Sbjct: 135 YQVTLTEHLSPFQAWRN 151
Score = 70.7 bits (172), Expect = 3e-14
Identities = 20/120 (16%), Positives = 32/120 (26%), Gaps = 6/120 (5%)
Query: 1299 CIIIKPSIYKKCNRCWHYQADVGER----DDYPDLCNRCFNNLFEPCAMCAGAIIHVRLG 1354
+ ++ + H + + L + EPC MC GAI R
Sbjct: 39 IAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPK 98
Query: 1355 EIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRNFVKNKI 1414
+ Y G + ++ T Q + L F R NK
Sbjct: 99 AVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPFYQVTLTEHLSPFQAWRNF--ANKK 156
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA
{Staphylococcus aureus [TaxId: 1280]}
Length = 151
Score = 102 bits (255), Expect = 1e-25
Identities = 59/137 (43%), Positives = 86/137 (62%), Gaps = 1/137 (0%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
AK A GEVP+GA++ K++ VI+ +N + T PTAHAE IA+ A+K+L ++R +
Sbjct: 15 AKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRL-EG 73
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
+YVTLEPC MCAG I+ R+ ++YG K G GS++NL Q+ NH I+ GV+
Sbjct: 74 CTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVL 133
Query: 177 QKQCEKLLKSFFIKRRN 193
++ C LL +FF R
Sbjct: 134 KEACSTLLTTFFKNLRA 150
Score = 68.1 bits (165), Expect = 1e-13
Identities = 34/123 (27%), Positives = 46/123 (37%), Gaps = 13/123 (10%)
Query: 1299 CIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNL-------------FEPCAMCA 1345
II K R L EPC MCA
Sbjct: 28 AIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCA 87
Query: 1346 GAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK 1405
G I+ R+ ++YG K G GS++NL Q+ NH I+ GV+++ C LL +FF
Sbjct: 88 GTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKN 147
Query: 1406 RRN 1408
R
Sbjct: 148 LRA 150
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 104 bits (261), Expect = 2e-24
Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 12/156 (7%)
Query: 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 510
K ++ PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ- 61
Query: 511 YGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGII 570
++P + + E ++ + DF I +DN + T N + +
Sbjct: 62 --LGITPEQ-------MIGEMSQEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRL 110
Query: 571 FKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 606
+ G++ + + + L + +
Sbjct: 111 KENGFIKNRTISQLYDPEKGMFLPDRFVVSGATPVM 146
Score = 104 bits (261), Expect = 2e-24
Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 12/156 (7%)
Query: 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 1660
K ++ PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ- 61
Query: 1661 YGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGII 1720
++P + + E ++ + DF I +DN + T N + +
Sbjct: 62 --LGITPEQ-------MIGEMSQEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRL 110
Query: 1721 FKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 1756
+ G++ + + + L + +
Sbjct: 111 KENGFIKNRTISQLYDPEKGMFLPDRFVVSGATPVM 146
Score = 55.7 bits (133), Expect = 3e-08
Identities = 40/282 (14%), Positives = 71/282 (25%), Gaps = 50/282 (17%)
Query: 783 MSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEK 842
+ + + + L++ E + R + +F ++
Sbjct: 105 LIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVVSGATPVMRDSEHFFFDLPS------ 158
Query: 843 KSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHW-GVPIAFFIHKKSGKLH 901
E + W ISR + G I K
Sbjct: 159 --FSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWL 216
Query: 902 PKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIR 961
+ + ++NL K Y K + T +++ G
Sbjct: 217 ------------DAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFHS 264
Query: 962 GSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSK 1021
L + F HG+V G KMSK
Sbjct: 265 LFWPAMLEG------SNFRKPSNLFV--------------------HGYVTV-NGAKMSK 297
Query: 1022 SKGNIIKPQKLCNLFGAEILRLWVAS--TDYSKDLSISNEIL 1061
S+G IK N F A+ LR + + + D+ ++ E
Sbjct: 298 SRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDF 339
Score = 55.7 bits (133), Expect = 3e-08
Identities = 40/282 (14%), Positives = 71/282 (25%), Gaps = 50/282 (17%)
Query: 1933 MSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEK 1992
+ + + + L++ E + R + +F ++
Sbjct: 105 LIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVVSGATPVMRDSEHFFFDLPS------ 158
Query: 1993 KSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHW-GVPIAFFIHKKSGKLH 2051
E + W ISR + G I K
Sbjct: 159 --FSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWL 216
Query: 2052 PKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIR 2111
+ + ++NL K Y K + T +++ G
Sbjct: 217 ------------DAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFHS 264
Query: 2112 GSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSK 2171
L + F HG+V G KMSK
Sbjct: 265 LFWPAMLEG------SNFRKPSNLFV--------------------HGYVTV-NGAKMSK 297
Query: 2172 SKGNIIKPQKLCNLFGAEILRLWVAS--TDYSKDLSISNEIL 2211
S+G IK N F A+ LR + + + D+ ++ E
Sbjct: 298 SRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDF 339
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 156
Score = 98.0 bits (243), Expect = 6e-24
Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 12/154 (7%)
Query: 41 MLIETDSPYLSPIPHRAKLALIAGEVPVGAVLV--KNNLVISYGYNQQITRNDPTAHAEI 98
M + D + A L G VP+G L+ K+ V+ G+N + + T H EI
Sbjct: 4 MASKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEI 63
Query: 99 IALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIIN 158
L + + K+ +Y TL PC MC GAII + + G
Sbjct: 64 STLENCGR--LEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKSKG----- 116
Query: 159 LFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRR 192
EK L V ++C+K++K F +R
Sbjct: 117 ---EKYLQTRGHEVVVVDDERCKKIMKQFIDERP 147
Score = 57.5 bits (138), Expect = 8e-10
Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 18/112 (16%)
Query: 1306 IYKKCNRCWHYQADVGERD----------DYPDLCNRCFNNLFEPCAMCAGAIIHVRLGE 1355
+ + N + + + + + PC MC GAII +
Sbjct: 44 LGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPR 103
Query: 1356 IIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRR 1407
+ G EK L V ++C+K++K F +R
Sbjct: 104 CVVGENVNFKSKG--------EKYLQTRGHEVVVVDDERCKKIMKQFIDERP 147
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus
thermophilus [TaxId: 274]}
Length = 179
Score = 93.9 bits (232), Expect = 4e-22
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 23/200 (11%)
Query: 607 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIK 666
S+YV F EP+K+ K ++IWT+TPWT+P N A VHPE+ YA +
Sbjct: 2 SVYVRFPLKEPKKLGLE---------KASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVG 52
Query: 667 NDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL 726
++ +L + ++ G L + + P + + L
Sbjct: 53 DEALILEEGLGRKLLGEGTP------VLKTFPGKALEGLPYTPPYPQ---ALEKGYFVVL 103
Query: 727 GDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIW 786
DY++ + GTGIVH APA+G ED + + ++ V ++G + F G+
Sbjct: 104 ADYVSQEDGTGIVHQAPAFGAEDLETARVYGL---PLLKTVDEEGKL--LVEPFKGLYFR 158
Query: 787 KASKLICSYLKKSKTLFNIE 806
+A++ I L+ LF E
Sbjct: 159 EANRAILRDLRGRGFLFKEE 178
Score = 93.9 bits (232), Expect = 4e-22
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 23/200 (11%)
Query: 1757 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIK 1816
S+YV F EP+K+ K ++IWT+TPWT+P N A VHPE+ YA +
Sbjct: 2 SVYVRFPLKEPKKLGLE---------KASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVG 52
Query: 1817 NDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL 1876
++ +L + ++ G L + + P + + L
Sbjct: 53 DEALILEEGLGRKLLGEGTP------VLKTFPGKALEGLPYTPPYPQ---ALEKGYFVVL 103
Query: 1877 GDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIW 1936
DY++ + GTGIVH APA+G ED + + ++ V ++G + F G+
Sbjct: 104 ADYVSQEDGTGIVHQAPAFGAEDLETARVYGL---PLLKTVDEEGKL--LVEPFKGLYFR 158
Query: 1937 KASKLICSYLKKSKTLFNIE 1956
+A++ I L+ LF E
Sbjct: 159 EANRAILRDLRGRGFLFKEE 178
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 85.5 bits (210), Expect = 9e-18
Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 13/165 (7%)
Query: 451 KFILHDGPPYANGDIHIGHAVNK-ILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK 509
++++ PYANG IH GH + DI V++ + G D ++ G D HG PI + K
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Query: 510 LYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGI 569
+ SP EI ++ ++ K+ +D +T ++ F
Sbjct: 63 ---EGRSPREIVDEFHEQIKITFQRAKIS---------FDFFGRTELPIHYKLSQEFFLK 110
Query: 570 IFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSF 614
++ G++ + +C K L + + F +
Sbjct: 111 AYENGHLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYI 155
Score = 85.5 bits (210), Expect = 9e-18
Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 13/165 (7%)
Query: 1601 KFILHDGPPYANGDIHIGHAVNK-ILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK 1659
++++ PYANG IH GH + DI V++ + G D ++ G D HG PI + K
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Query: 1660 LYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGI 1719
+ SP EI ++ ++ K+ +D +T ++ F
Sbjct: 63 ---EGRSPREIVDEFHEQIKITFQRAKIS---------FDFFGRTELPIHYKLSQEFFLK 110
Query: 1720 IFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSF 1764
++ G++ + +C K L + + F +
Sbjct: 111 AYENGHLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYI 155
Score = 80.8 bits (198), Expect = 3e-16
Identities = 39/274 (14%), Positives = 82/274 (29%), Gaps = 33/274 (12%)
Query: 793 CSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITA 852
K +K + PI +R + ++I M E
Sbjct: 116 HLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDF--------AERLKRW 167
Query: 853 INKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIA 912
I K + P+ L + + I+R +WG+P+ GK+ E
Sbjct: 168 IEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFE------ 221
Query: 913 KKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPA 972
I E + L++ + + H + +PA
Sbjct: 222 -------APIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPA 274
Query: 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKL 1032
+L +++ + + + ++ +GKK S S+ I +
Sbjct: 275 --FLMAYGKYKDEEVEAEWN--------LPYDIPANEYLTL-EGKKFSTSRNWAIWVHEF 323
Query: 1033 CNLFGAEILRLWVAST-DYSKDLSISNEILNRVV 1065
++F A+ LR ++ + ++D S +
Sbjct: 324 LDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRI 357
Score = 80.8 bits (198), Expect = 3e-16
Identities = 39/274 (14%), Positives = 82/274 (29%), Gaps = 33/274 (12%)
Query: 1943 CSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITA 2002
K +K + PI +R + ++I M E
Sbjct: 116 HLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDF--------AERLKRW 167
Query: 2003 INKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIA 2062
I K + P+ L + + I+R +WG+P+ GK+ E
Sbjct: 168 IEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFE------ 221
Query: 2063 KKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPA 2122
I E + L++ + + H + +PA
Sbjct: 222 -------APIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPA 274
Query: 2123 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKL 2182
+L +++ + + + ++ +GKK S S+ I +
Sbjct: 275 --FLMAYGKYKDEEVEAEWN--------LPYDIPANEYLTL-EGKKFSTSRNWAIWVHEF 323
Query: 2183 CNLFGAEILRLWVAST-DYSKDLSISNEILNRVV 2215
++F A+ LR ++ + ++D S +
Sbjct: 324 LDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRI 357
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD
{Bacillus subtilis [TaxId: 1423]}
Length = 145
Score = 79.5 bits (195), Expect = 1e-17
Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 10/139 (7%)
Query: 57 AKLALIAGEV--PVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS 114
AK E VGAV+VK+ ++ G + + AHAE+ A+ MA
Sbjct: 13 AKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYG----EAHAEVHAIHMAGAHAEGADIY 68
Query: 115 KNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGG 174
+ CA II+ + + G I++ +E + G
Sbjct: 69 VTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEV----REG 124
Query: 175 VMQKQCEKLLKSFFIKRRN 193
++ Q E+L + F R
Sbjct: 125 ILADQAERLNEKFLHFMRT 143
Score = 64.1 bits (155), Expect = 4e-12
Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 4/117 (3%)
Query: 1292 IKNLSEECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLFEPCAMCAGAIIHV 1351
+K+ + + + + + CA II+
Sbjct: 31 VKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSHYGKTPPCAELIINS 90
Query: 1352 RLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408
+ + G I++ +E + G++ Q E+L + F R
Sbjct: 91 GIKRVFVAMRDPNPLVAGRGISMMKEAGIEV----REGILADQAERLNEKFLHFMRT 143
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 82.0 bits (201), Expect = 1e-16
Identities = 27/145 (18%), Positives = 57/145 (39%), Gaps = 12/145 (8%)
Query: 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 510
F + Y N + H+GHA ++ D + +++ +DG+ ++ G D HG + +
Sbjct: 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA- 62
Query: 511 YGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGII 570
P + K + LGI +D+ +T + ++ +
Sbjct: 63 --AGEDPKAFV-------DRVSGRFKRAWDLLGI--AYDDFIRTTEERHKKVVQLVLKKV 111
Query: 571 FKKGYVYHGLKPVNWCFDCKSALAE 595
++ G +Y+G +C C+ E
Sbjct: 112 YEAGDIYYGEYEGLYCVSCERFYTE 136
Score = 82.0 bits (201), Expect = 1e-16
Identities = 27/145 (18%), Positives = 57/145 (39%), Gaps = 12/145 (8%)
Query: 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 1660
F + Y N + H+GHA ++ D + +++ +DG+ ++ G D HG + +
Sbjct: 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA- 62
Query: 1661 YGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGII 1720
P + K + LGI +D+ +T + ++ +
Sbjct: 63 --AGEDPKAFV-------DRVSGRFKRAWDLLGI--AYDDFIRTTEERHKKVVQLVLKKV 111
Query: 1721 FKKGYVYHGLKPVNWCFDCKSALAE 1745
++ G +Y+G +C C+ E
Sbjct: 112 YEAGDIYYGEYEGLYCVSCERFYTE 136
Score = 75.1 bits (183), Expect = 2e-14
Identities = 36/269 (13%), Positives = 79/269 (29%), Gaps = 5/269 (1%)
Query: 803 FNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSW 862
++ +Y R + Q + + E + +
Sbjct: 80 RAWDLLGIAYDDFIRTTEERHKKVV-QLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKE 138
Query: 863 GKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 922
+ L + + + + ++ + +P + + + + I
Sbjct: 139 LVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPI 198
Query: 923 WQNLD--IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFP-ADLYLEGS 979
K + N VWFD+ + + + + + +
Sbjct: 199 GDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIG 258
Query: 980 DQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAE 1039
T + Y+ L GF++ G+KMSK+ GN++ P L +G +
Sbjct: 259 KDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRD 318
Query: 1040 ILRLWVAS-TDYSKDLSISNEILNRVVET 1067
LR ++ Y +D +S E L E
Sbjct: 319 ALRYYLLREIPYGQDTPVSEEALRTRYEA 347
Score = 75.1 bits (183), Expect = 2e-14
Identities = 36/269 (13%), Positives = 79/269 (29%), Gaps = 5/269 (1%)
Query: 1953 FNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSW 2012
++ +Y R + Q + + E + +
Sbjct: 80 RAWDLLGIAYDDFIRTTEERHKKVV-QLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKE 138
Query: 2013 GKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 2072
+ L + + + + ++ + +P + + + + I
Sbjct: 139 LVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPI 198
Query: 2073 WQNLD--IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFP-ADLYLEGS 2129
K + N VWFD+ + + + + + +
Sbjct: 199 GDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIG 258
Query: 2130 DQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAE 2189
T + Y+ L GF++ G+KMSK+ GN++ P L +G +
Sbjct: 259 KDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRD 318
Query: 2190 ILRLWVAS-TDYSKDLSISNEILNRVVET 2217
LR ++ Y +D +S E L E
Sbjct: 319 ALRYYLLREIPYGQDTPVSEEALRTRYEA 347
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 74.2 bits (181), Expect = 3e-15
Identities = 29/188 (15%), Positives = 60/188 (31%), Gaps = 23/188 (12%)
Query: 624 FNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683
F ++ + I ++T+ P T+ L + PE L + V++
Sbjct: 9 FPVEG---KEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKR---EEVLAYVEAA 62
Query: 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAP 743
+K + G K +P PI+ DY+ GTG + + P
Sbjct: 63 KRKTEIERQAEGREKTGVFLGAYALNPA------TGERIPIWTADYVLFGYGTGAIMAVP 116
Query: 744 AYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPL-----------FGGMSIWKASKLI 792
A+ D+ +K + +I + F G + + +
Sbjct: 117 AHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKV 176
Query: 793 CSYLKKSK 800
++L++
Sbjct: 177 IAWLEEKG 184
Score = 74.2 bits (181), Expect = 3e-15
Identities = 29/188 (15%), Positives = 60/188 (31%), Gaps = 23/188 (12%)
Query: 1774 FNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 1833
F ++ + I ++T+ P T+ L + PE L + V++
Sbjct: 9 FPVEG---KEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKR---EEVLAYVEAA 62
Query: 1834 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAP 1893
+K + G K +P PI+ DY+ GTG + + P
Sbjct: 63 KRKTEIERQAEGREKTGVFLGAYALNPA------TGERIPIWTADYVLFGYGTGAIMAVP 116
Query: 1894 AYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPL-----------FGGMSIWKASKLI 1942
A+ D+ +K + +I + F G + + +
Sbjct: 117 AHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKV 176
Query: 1943 CSYLKKSK 1950
++L++
Sbjct: 177 IAWLEEKG 184
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD
{Thermotoga maritima [TaxId: 2336]}
Length = 147
Score = 65.0 bits (157), Expect = 2e-12
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 6/138 (4%)
Query: 56 RAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSK 115
+ L + PVGAV+VK+ +I+ G++ A A + L
Sbjct: 14 KKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGEDLRGATLI-V 72
Query: 116 NYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGV 175
+ C II + ++ GT + + NH + GV
Sbjct: 73 TLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGVEK-----FRNHGIEVIEGV 127
Query: 176 MQKQCEKLLKSFFIKRRN 193
++++ +KL + F
Sbjct: 128 LEEEVKKLCEFFITYVTK 145
Score = 43.4 bits (101), Expect = 6e-05
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 6/97 (6%)
Query: 1313 CWHYQADVGERDDYPDL-CNRCFNNLFEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSI 1371
GE L + C II + ++ GT + +
Sbjct: 54 AIESARKKGEDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGV 113
Query: 1372 INLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408
NH + GV++++ +KL + F
Sbjct: 114 EK-----FRNHGIEVIEGVLEEEVKKLCEFFITYVTK 145
>d1nxza1 b.122.1.2 (A:2-73) Hypothetical protein HI0303 {Haemophilus
influenzae [TaxId: 727]}
Length = 72
Score = 61.3 bits (149), Expect = 4e-12
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 206 RFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISI-KKKILI 263
R Y+PI YL ++ NH+ VLR+ + LF+G Y AK+I KK + +
Sbjct: 4 RIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKV 63
Query: 264 QIIS 267
+I+
Sbjct: 64 EILG 67
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 63.0 bits (152), Expect = 1e-10
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 5/132 (3%)
Query: 935 DAVNYKKSNDTLDVW-FDSGI---THQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSL 990
D V +K S + W G + KQL D++ GSD + +
Sbjct: 180 DFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEI 239
Query: 991 LTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY 1050
S + + G V +KMSKS GN + + + AE +R ++ S Y
Sbjct: 240 AQSTCAHDGQYVNYWMHSGMV-MVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHY 298
Query: 1051 SKDLSISNEILN 1062
L+ S E L
Sbjct: 299 RSQLNYSEENLK 310
Score = 63.0 bits (152), Expect = 1e-10
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 5/132 (3%)
Query: 2085 DAVNYKKSNDTLDVW-FDSGI---THQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSL 2140
D V +K S + W G + KQL D++ GSD + +
Sbjct: 180 DFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEI 239
Query: 2141 LTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY 2200
S + + G V +KMSKS GN + + + AE +R ++ S Y
Sbjct: 240 AQSTCAHDGQYVNYWMHSGMV-MVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHY 298
Query: 2201 SKDLSISNEILN 2212
L+ S E L
Sbjct: 299 RSQLNYSEENLK 310
Score = 44.9 bits (105), Expect = 7e-05
Identities = 17/154 (11%), Positives = 43/154 (27%), Gaps = 2/154 (1%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
HIGH + D++ ++ G+ +YV I + + ++ +
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMV 89
Query: 519 EIQNKARALAYEKIEQQKMDFMRL--GILGEWDNSYKTMDFLNEANELRAFGIIFKKGYV 576
+ ++ + + D + E + + A ++F
Sbjct: 90 DRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD 149
Query: 577 YHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYV 610
D A A ++ K+ +
Sbjct: 150 PTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVL 183
Score = 44.9 bits (105), Expect = 7e-05
Identities = 17/154 (11%), Positives = 43/154 (27%), Gaps = 2/154 (1%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 1668
HIGH + D++ ++ G+ +YV I + + ++ +
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMV 89
Query: 1669 EIQNKARALAYEKIEQQKMDFMRL--GILGEWDNSYKTMDFLNEANELRAFGIIFKKGYV 1726
+ ++ + + D + E + + A ++F
Sbjct: 90 DRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD 149
Query: 1727 YHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYV 1760
D A A ++ K+ +
Sbjct: 150 PTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVL 183
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4
[TaxId: 10665]}
Length = 193
Score = 59.5 bits (143), Expect = 4e-10
Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 10/143 (6%)
Query: 46 DSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMAS 105
+ +L P A + E + L + + HAE+ A+ A+
Sbjct: 55 EQGWLLNKPKHAIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAA 114
Query: 106 KLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKL 165
+ ++ + +YVTL PC CA AI + +++Y K + L
Sbjct: 115 ENGSSI---EGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKPGW-------DDIL 164
Query: 166 NHHTILTGGVMQKQCEKLLKSFF 188
+ I V +K KL
Sbjct: 165 RNAGIEVFNVPKKNLNKLNWENI 187
Score = 36.4 bits (83), Expect = 0.019
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 1338 FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEK 1397
PC CA AI + +++Y K + L + I V +K K
Sbjct: 129 LSPCPDCAKAIAQSGIKKLVYCETYDKNKPGW-------DDILRNAGIEVFNVPKKNLNK 181
Query: 1398 LLKSFF 1403
L
Sbjct: 182 LNWENI 187
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 57.1 bits (136), Expect = 1e-08
Identities = 26/244 (10%), Positives = 76/244 (31%), Gaps = 12/244 (4%)
Query: 1587 KIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 1646
I +I + + K+++ G +G +H+G+ I+ G++ +++ +
Sbjct: 5 YIADKIIRERGEKEKYVVESGI-TPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMW 63
Query: 1647 DCHGMP------IEIQIEKLYGKNLSPIEIQN-KARALAYEKIEQQKMDFMRLGILGEWD 1699
D + + + + G +S + + A + + + + +LGI +
Sbjct: 64 DDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLL 123
Query: 1700 NSYKTMDFLNEANE----LRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYD 1755
+ + + E I + Y + + E++++ +
Sbjct: 124 YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAE 183
Query: 1756 FSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHI 1815
+ G + + + ++ SG + P D+ +
Sbjct: 184 IIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGS 243
Query: 1816 KNDP 1819
D
Sbjct: 244 SYDT 247
Score = 55.1 bits (131), Expect = 4e-08
Identities = 25/238 (10%), Positives = 74/238 (31%), Gaps = 12/238 (5%)
Query: 443 IKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMP 502
I+ + K+++ G +G +H+G+ I+ G++ +++ +D +
Sbjct: 11 IRERGEKEKYVVESGI-TPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRF 69
Query: 503 ------IEIQIEKLYGKNLSPIEIQN-KARALAYEKIEQQKMDFMRLGILGEWDNSYKTM 555
+ + + G +S + + A + + + + +LGI + + +
Sbjct: 70 RKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELY 129
Query: 556 DFLNEANE----LRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVG 611
+ E I + Y + + E++++ + + G
Sbjct: 130 KRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDG 189
Query: 612 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDP 669
+ + + ++ SG + P D+ + D
Sbjct: 190 GWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDT 247
Score = 50.5 bits (119), Expect = 1e-06
Identities = 24/172 (13%), Positives = 48/172 (27%), Gaps = 7/172 (4%)
Query: 884 HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSN 943
+ + K L + + I W ++ +
Sbjct: 148 IMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDI 207
Query: 944 DTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYK 1003
+ +V + D + + + + K AP
Sbjct: 208 RSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVA----GSSYDTGKEIIKEVYGKEAPL- 262
Query: 1004 ALLTHGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDL 1054
L + FV + + KMS SKGN+I L + ++R A +K++
Sbjct: 263 -SLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEI 313
Score = 50.5 bits (119), Expect = 1e-06
Identities = 24/172 (13%), Positives = 48/172 (27%), Gaps = 7/172 (4%)
Query: 2034 HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSN 2093
+ + K L + + I W ++ +
Sbjct: 148 IMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDI 207
Query: 2094 DTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYK 2153
+ +V + D + + + + K AP
Sbjct: 208 RSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVA----GSSYDTGKEIIKEVYGKEAPL- 262
Query: 2154 ALLTHGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDL 2204
L + FV + + KMS SKGN+I L + ++R A +K++
Sbjct: 263 -SLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEI 313
>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 56.5 bits (135), Expect = 1e-08
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNS------KILQKVMGSISLKNMLIETDSPYLSPIP 54
+LD ++I+LG Y+ F I +L + L +++ D S +
Sbjct: 191 NLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLK 250
Query: 55 HRAK 58
Sbjct: 251 ANGG 254
>d1vhka1 b.122.1.2 (A:2-73) Hypothetical protein YqeU {Bacillus
subtilis [TaxId: 1423]}
Length = 72
Score = 49.5 bits (118), Expect = 7e-08
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 206 RFYYPIP---FIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISI-KKK 260
R++ + + V+H+ NV+R+ + II + G E +L S+ K K
Sbjct: 2 RYFIELTKQQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDK 61
Query: 261 ILIQIISFL 269
+ +I +
Sbjct: 62 VSCLVIEWT 70
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus
thermophilus [TaxId: 274]}
Length = 143
Score = 50.2 bits (119), Expect = 2e-07
Identities = 31/175 (17%), Positives = 51/175 (29%), Gaps = 45/175 (25%)
Query: 632 GKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKG 691
G G+I I T P T+ A+QA+ VHPE +
Sbjct: 12 GGGFIEIATVRPETVFADQAIAVHPEDER------------------------------- 40
Query: 692 NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFL 751
PI + D GTG + PA+ D+
Sbjct: 41 -------------YRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYE 87
Query: 752 IFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIE 806
I ++ +K +IN G+ ++A + +++ L E
Sbjct: 88 IGERHGLKPVSVINL-EGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEE 141
Score = 50.2 bits (119), Expect = 2e-07
Identities = 31/175 (17%), Positives = 51/175 (29%), Gaps = 45/175 (25%)
Query: 1782 GKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKG 1841
G G+I I T P T+ A+QA+ VHPE +
Sbjct: 12 GGGFIEIATVRPETVFADQAIAVHPEDER------------------------------- 40
Query: 1842 NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFL 1901
PI + D GTG + PA+ D+
Sbjct: 41 -------------YRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYE 87
Query: 1902 IFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIE 1956
I ++ +K +IN G+ ++A + +++ L E
Sbjct: 88 IGERHGLKPVSVINL-EGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEE 141
>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga
maritima [TaxId: 2336]}
Length = 260
Score = 51.5 bits (122), Expect = 5e-07
Identities = 20/57 (35%), Positives = 37/57 (64%)
Query: 2 LDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
+ A++ I+LGF + G VT+ ++ L++V+ + L+ +++ETD P+L P P R K
Sbjct: 162 YEWAKKFIDLGFLLGIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFLPPQPFRGK 218
>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH
{Escherichia coli [TaxId: 562]}
Length = 265
Score = 49.6 bits (117), Expect = 2e-06
Identities = 30/58 (51%), Positives = 44/58 (75%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
+ A ++++LGFYISFSGIVTF+N++ L+ + L +L+ETDSPYL+P+PHR K
Sbjct: 160 DRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGK 217
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus
thermophilus [TaxId: 274]}
Length = 218
Score = 44.7 bits (104), Expect = 6e-05
Identities = 21/171 (12%), Positives = 55/171 (32%), Gaps = 16/171 (9%)
Query: 1071 IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSK 1130
+ N RF+L + F + + D++ ++ +EI + Y + +
Sbjct: 4 LYNAARFVLLSREGFQAKEDTPTL-----ADRFMRSRLSRGVEEITALYEALDLAQAARE 58
Query: 1131 LQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEA 1190
+ + +YL+ K L ++ + LL+L+ P++ F + E
Sbjct: 59 VYELVWSEFCDWYLEAAKPALKAGNAHTLRTL------EEVLAVLLKLLHPMMPFLTSEL 112
Query: 1191 WSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQK 1241
+ + K + + + + +R+ +
Sbjct: 113 YQALTGKEELALEAWPEPGGRDEEAERAFE-----ALKQAVTAVRALKAEA 158
Score = 44.7 bits (104), Expect = 6e-05
Identities = 21/171 (12%), Positives = 55/171 (32%), Gaps = 16/171 (9%)
Query: 2221 IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSK 2280
+ N RF+L + F + + D++ ++ +EI + Y + +
Sbjct: 4 LYNAARFVLLSREGFQAKEDTPTL-----ADRFMRSRLSRGVEEITALYEALDLAQAARE 58
Query: 2281 LQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEA 2340
+ + +YL+ K L ++ + LL+L+ P++ F + E
Sbjct: 59 VYELVWSEFCDWYLEAAKPALKAGNAHTLRTL------EEVLAVLLKLLHPMMPFLTSEL 112
Query: 2341 WSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQK 2391
+ + K + + + + +R+ +
Sbjct: 113 YQALTGKEELALEAWPEPGGRDEEAERAFE-----ALKQAVTAVRALKAEA 158
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV
{Escherichia coli [TaxId: 562]}
Length = 259
Score = 43.5 bits (101), Expect = 2e-04
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 6 REIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
++LG+ I G +T+ + + V+ + L ++L+ETD+P + + +
Sbjct: 167 ERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQ 219
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 37.6 bits (86), Expect = 0.012
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 3 DVAREIIELGFYISFSGIVT-FKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
+ + + G YI +G V + L++++ I + +LIETD+PYL P K
Sbjct: 159 EEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPK 215
>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio
cholerae [TaxId: 666]}
Length = 201
Score = 36.3 bits (84), Expect = 0.021
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 1519 PQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGELSKREPG 1578
++ +K N GV +SLG ++L + +++ E+ +E G
Sbjct: 145 GPNPCFILTDHIPMPKKSGNSMKRLGVEKISLGPKMLFASQ----CVTLIHNEIDHQEAG 200
Query: 1579 W 1579
W
Sbjct: 201 W 201
>d2tssa1 b.40.2.2 (A:1-93) Toxic shock syndrome toxin-1 (TSST-1)
{Staphylococcus aureus [TaxId: 1280]}
Length = 93
Score = 30.6 bits (68), Expect = 0.48
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 18 SGIVTFKNSKILQKVMGSISLKNM-----LIETDSPYLSP 52
SG TF NS++L +GS+ +KN LI SPY SP
Sbjct: 15 SGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSP 54
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase
{Escherichia coli [TaxId: 562]}
Length = 144
Score = 29.5 bits (66), Expect = 2.6
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 8/69 (11%)
Query: 67 PVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT---- 122
P G L + I G + +PT AL + L Y + + +
Sbjct: 60 PSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILL--NLKGYDYPDIQRAVLAEKAD 117
Query: 123 --LEPCAMC 129
L
Sbjct: 118 APLIQWDAT 126
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus
thermophilus [TaxId: 274]}
Length = 128
Score = 29.1 bits (64), Expect = 2.7
Identities = 12/128 (9%), Positives = 32/128 (25%), Gaps = 17/128 (13%)
Query: 1076 RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 1135
R + + + + + D+ + K++ F+ ++ L +
Sbjct: 7 RRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFL 66
Query: 1136 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFS 1195
R + L+++ P +EE W F
Sbjct: 67 -----------------NALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFW 109
Query: 1196 DKNFYIES 1203
+ +
Sbjct: 110 PDSLFEAG 117
Score = 29.1 bits (64), Expect = 2.7
Identities = 12/128 (9%), Positives = 32/128 (25%), Gaps = 17/128 (13%)
Query: 2226 RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 2285
R + + + + + D+ + K++ F+ ++ L +
Sbjct: 7 RRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFL 66
Query: 2286 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFS 2345
R + L+++ P +EE W F
Sbjct: 67 -----------------NALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFW 109
Query: 2346 DKNFYIES 2353
+ +
Sbjct: 110 PDSLFEAG 117
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 30.5 bits (68), Expect = 3.1
Identities = 36/251 (14%), Positives = 66/251 (26%), Gaps = 16/251 (6%)
Query: 1182 ILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQK 1241
IL F+++E +I+ + G F Q + + ++ K L + S + K
Sbjct: 291 ILGFSADEKTAIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVADKAAYLMGLNSAELLK 350
Query: 1242 LEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECII 1301
G+ E + K + + N G K + + N + +
Sbjct: 351 ALCYPRVGVGN-----EAVTKGETVSE-VHNSVGALAKAVYEKMFLWMVIRIN---QQLD 401
Query: 1302 IKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLFEP-CAMCAGAIIHVRLGEIIYGT 1360
K ++ + + + LC N + + +
Sbjct: 402 TKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEW 461
Query: 1361 PSFKTGACGSIINLFQEKK------LNHHTILTGGVMQKQCEKLLKSFFIKRRNFVKNKI 1414
G + EK L + KL K NF K K
Sbjct: 462 EFIDFGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYDEHLGKSNNFQKPKP 521
Query: 1415 QALPENRKFDL 1425
F L
Sbjct: 522 AKGKAEAHFSL 532
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 30.3 bits (67), Expect = 3.2
Identities = 24/189 (12%), Positives = 56/189 (29%), Gaps = 2/189 (1%)
Query: 462 NGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIE--KLYGKNLSPIE 519
N ++H+GH N L D I + G + + D G + + YG E
Sbjct: 19 NKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKE 78
Query: 520 IQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 579
+ AY ++ Q + E ++ + + E N + +
Sbjct: 79 KYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARY 138
Query: 580 LKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIW 639
V ++ L + + ++ + + ++++
Sbjct: 139 DLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLR 198
Query: 640 TSTPWTIPA 648
++ T A
Sbjct: 199 SNGTATYYA 207
Score = 30.3 bits (67), Expect = 3.2
Identities = 24/189 (12%), Positives = 56/189 (29%), Gaps = 2/189 (1%)
Query: 1612 NGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIE--KLYGKNLSPIE 1669
N ++H+GH N L D I + G + + D G + + YG E
Sbjct: 19 NKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKE 78
Query: 1670 IQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729
+ AY ++ Q + E ++ + + E N + +
Sbjct: 79 KYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARY 138
Query: 1730 LKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIW 1789
V ++ L + + ++ + + ++++
Sbjct: 139 DLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLR 198
Query: 1790 TSTPWTIPA 1798
++ T A
Sbjct: 199 SNGTATYYA 207
>d2bs2a1 a.7.3.1 (A:458-655) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 198
Score = 28.9 bits (64), Expect = 5.9
Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 1228 YMILKKIRSKVMQKLEKIRSTGII--GSSLQAEIILKINKLDFEILNEFGEELKFFLLTS 1285
+ I +++ VM + GI G L+ + + ++ +L + N + +
Sbjct: 7 FKIKNRMK-DVMD-----DNVGIFRDGPHLE-KAVKELEELYKKSKNVGIKNKRLHANPE 59
Query: 1286 SVSLFQIKNLSEECIIIKPSIYKKC-NRCWHYQADVGERDD 1325
+++ + + + + + +R H + D +RDD
Sbjct: 60 LEEAYRVPMMLKVALCVAKGALDRTESRGAHNREDYPKRDD 100
Score = 28.9 bits (64), Expect = 5.9
Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 2378 YMILKKIRSKVMQKLEKIRSTGII--GSSLQAEIILKINKLDFEILNEFGEELKFFLLTS 2435
+ I +++ VM + GI G L+ + + ++ +L + N + +
Sbjct: 7 FKIKNRMK-DVMD-----DNVGIFRDGPHLE-KAVKELEELYKKSKNVGIKNKRLHANPE 59
Query: 2436 SVSLFQIKNLSEECIIIKPSIYKKC-NRCWHYQADVGERDD 2475
+++ + + + + + +R H + D +RDD
Sbjct: 60 LEEAYRVPMMLKVALCVAKGALDRTESRGAHNREDYPKRDD 100
>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 194
Score = 28.6 bits (64), Expect = 6.5
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 1517 QSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGELSKRE 1576
Q P +IG G TE++E + + LSL L E + I + L + +
Sbjct: 138 QLPPNPLFVIGDHEGLTEEQEKVVERYAALKLSLSPLSLLAEQ----CVVIAHHHLDRLQ 193
>d1neka1 a.7.3.1 (A:451-588) Succinate dehydogenase {Escherichia coli
[TaxId: 562]}
Length = 138
Score = 27.8 bits (61), Expect = 8.9
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 1300 IIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCF 1334
+ ++ +R H + D +RDD LC+ +
Sbjct: 75 ATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLY 109
Score = 27.8 bits (61), Expect = 8.9
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 2450 IIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCF 2484
+ ++ +R H + D +RDD LC+ +
Sbjct: 75 ATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLY 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.421
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 9,860,492
Number of extensions: 508121
Number of successful extensions: 1444
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1379
Number of HSP's successfully gapped: 123
Length of query: 2492
Length of database: 2,407,596
Length adjustment: 101
Effective length of query: 2391
Effective length of database: 1,020,866
Effective search space: 2440890606
Effective search space used: 2440890606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.8 bits)