BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15224
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/291 (70%), Positives = 238/291 (81%), Gaps = 2/291 (0%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV +A DGPMPQTREHILL RQVGVPYI+VFLNK DM
Sbjct: 376 MITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVE 435
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDG 120
++Y+FPG+D PI++GSA ALEGD E IL L+ LD+YIP P RAID
Sbjct: 436 MEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEAKILELAGFLDSYIPEPERAIDK 493
Query: 121 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQG 180
FLLP+EDVFSISGRGTVVTGRVERGI++VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G
Sbjct: 494 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 553
Query: 181 QAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240
+AG+N+G+LLRG KRE++ERGQVLAKPG+IKPH F E+Y LSKDEGGRHTPFF YRP
Sbjct: 554 RAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRP 613
Query: 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
QFYFRTTDVTG+IELP+ EMVMPGDN+ + V LI+PIAM++GLRFAIREG
Sbjct: 614 QFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREG 664
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 427 bits (1098), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/291 (70%), Positives = 238/291 (81%), Gaps = 2/291 (0%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV +A DGPMPQTREHILL RQVGVPYI+VFLNK DM
Sbjct: 376 MITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVE 435
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDG 120
++Y+FPG+D PI++GSA ALEGD E IL L+ LD+YIP P RAID
Sbjct: 436 MEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEAKILELAGFLDSYIPEPERAIDK 493
Query: 121 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQG 180
FLLP+EDVFSISGRGTVVTGRVERGI++VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G
Sbjct: 494 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 553
Query: 181 QAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240
+AG+N+G+LLRG KRE++ERGQVLAKPG+IKPH F E+Y LSKDEGGRHTPFF YRP
Sbjct: 554 RAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRP 613
Query: 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
QFYFRTTDVTG+IELP+ EMVMPGDN+ + V LI+PIAM++GLRFAIREG
Sbjct: 614 QFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREG 664
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 424 bits (1090), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/291 (70%), Positives = 238/291 (81%), Gaps = 2/291 (0%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV +A DGPMPQTREHILL RQVGVPYI+VFLNK DM
Sbjct: 92 MITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVE 151
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDG 120
++Y+FPG+D PI++GSA ALEGD E IL L+ LD+YIP P RAID
Sbjct: 152 MEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEAKILELAGFLDSYIPEPERAIDK 209
Query: 121 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQG 180
FLLP+EDVFSISGRGTVVTGRVERGI++VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G
Sbjct: 210 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 269
Query: 181 QAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240
+AG+N+G+LLRG KRE++ERGQVLAKPG+IKPH F E+Y LSKDEGGRHTPFF YRP
Sbjct: 270 RAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRP 329
Query: 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
QFYFRTTDVTG+IELP+ EMVMPGDN+ + V LI+PIAM++GLRFAIREG
Sbjct: 330 QFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREG 380
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 424 bits (1090), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/291 (70%), Positives = 238/291 (81%), Gaps = 2/291 (0%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV +A DGPMPQTREHILL RQVGVPYI+VFLNK DM
Sbjct: 91 MITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVE 150
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDG 120
++Y+FPG+D PI++GSA ALEGD E IL L+ LD+YIP P RAID
Sbjct: 151 MEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEAKILELAGFLDSYIPEPERAIDK 208
Query: 121 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQG 180
FLLP+EDVFSISGRGTVVTGRVERGI++VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G
Sbjct: 209 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 268
Query: 181 QAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240
+AG+N+G+LLRG KRE++ERGQVLAKPG+IKPH F E+Y LSKDEGGRHTPFF YRP
Sbjct: 269 RAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRP 328
Query: 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
QFYFRTTDVTG+IELP+ EMVMPGDN+ + V LI+PIAM++GLRFAIREG
Sbjct: 329 QFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREG 379
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 424 bits (1090), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/291 (70%), Positives = 238/291 (81%), Gaps = 2/291 (0%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV +A DGPMPQTREHILL RQVGVPYI+VFLNK DM
Sbjct: 91 MITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVE 150
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDG 120
++Y+FPG+D PI++GSA ALEGD E IL L+ LD+YIP P RAID
Sbjct: 151 MEVRELLSQYDFPGDDTPIVRGSALKALEGDA--EWEAKILELAGFLDSYIPEPERAIDK 208
Query: 121 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQG 180
FLLP+EDVFSISGRGTVVTGRVERGI++VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G
Sbjct: 209 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 268
Query: 181 QAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240
+AG+N+G+LLRG KRE++ERGQVLAKPG+IKPH F E+Y LSKDEGGRHTPFF YRP
Sbjct: 269 RAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRP 328
Query: 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
QFYFRTTDVTG+IELP+ EMVMPGDN+ + V LI+PIAM++GLRFAIREG
Sbjct: 329 QFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREG 379
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/291 (70%), Positives = 238/291 (81%), Gaps = 2/291 (0%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV +A DGPMPQTREHILL RQVGVPYI+VFLNK DM
Sbjct: 91 MITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVE 150
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDG 120
++Y+FPG+D PI++GSA ALEGD E IL L+ LD+YIP P RAID
Sbjct: 151 MEVRELLSQYDFPGDDTPIVRGSALKALEGDA--EWEAKILELAGFLDSYIPEPERAIDK 208
Query: 121 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQG 180
FLLP+EDVFSISGRGTVVTGRVERGI++VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G
Sbjct: 209 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 268
Query: 181 QAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240
+AG+N+G+LLRG KRE++ERGQVLAKPG+IKPH F E+Y LSKDEGGRHTPFF YRP
Sbjct: 269 RAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRP 328
Query: 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
QFYFRTTDVTG+IELP+ EMVMPGDN+ + V LI+PIAM++GLRFAIREG
Sbjct: 329 QFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREG 379
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/291 (70%), Positives = 238/291 (81%), Gaps = 2/291 (0%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV +A DGPMPQTREHILL RQVGVPYI+VFLNK DM
Sbjct: 92 MITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVE 151
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDG 120
++Y+FPG+D PI++GSA ALEGD E IL L+ LD+YIP P RAID
Sbjct: 152 MEVRELLSQYDFPGDDTPIVRGSALKALEGDA--EWEAKILELAGFLDSYIPEPERAIDK 209
Query: 121 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQG 180
FLLP+EDVFSISGRGTVVTGRVERGI++VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G
Sbjct: 210 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 269
Query: 181 QAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240
+AG+N+G+LLRG KRE++ERGQVLAKPG+IKPH F E+Y LSKDEGGRHTPFF YRP
Sbjct: 270 RAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRP 329
Query: 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
QFYFRTTDVTG+IELP+ EMVMPGDN+ + V LI+PIAM++GLRFAIREG
Sbjct: 330 QFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREG 380
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/291 (70%), Positives = 238/291 (81%), Gaps = 2/291 (0%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV +A DGPMPQTREHILL RQVGVPYI+VFLNK DM
Sbjct: 77 MITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVE 136
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDG 120
++Y+FPG+D PI++GSA ALEGD E IL L+ LD+YIP P RAID
Sbjct: 137 MEVRELLSQYDFPGDDTPIVRGSALKALEGDA--EWEAKILELAGFLDSYIPEPERAIDK 194
Query: 121 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQG 180
FLLP+EDVFSISGRGTVVTGRVERGI++VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G
Sbjct: 195 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 254
Query: 181 QAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240
+AG+N+G+LLRG KRE++ERGQVLAKPG+IKPH F E+Y LSKDEGGRHTPFF YRP
Sbjct: 255 RAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRP 314
Query: 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
QFYFRTTDVTG+IELP+ EMVMPGDN+ + V LI+PIAM++GLRFAIREG
Sbjct: 315 QFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREG 365
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/291 (70%), Positives = 238/291 (81%), Gaps = 2/291 (0%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV +A DGPMPQTREHILL RQVGVPYI+VFLNK DM
Sbjct: 83 MITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVE 142
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDG 120
++Y+FPG+D PI++GSA ALEGD E IL L+ LD+YIP P RAID
Sbjct: 143 MEVRELLSQYDFPGDDTPIVRGSALKALEGDA--EWEAKILELAGFLDSYIPEPERAIDK 200
Query: 121 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQG 180
FLLP+EDVFSISGRGTVVTGRVERGI++VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G
Sbjct: 201 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 260
Query: 181 QAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240
+AG+N+G+LLRG KRE++ERGQVLAKPG+IKPH F E+Y LSKDEGGRHTPFF YRP
Sbjct: 261 RAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRP 320
Query: 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
QFYFRTTDVTG+IELP+ EMVMPGDN+ + V LI+PIAM++GLRFAIREG
Sbjct: 321 QFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREG 371
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/291 (70%), Positives = 238/291 (81%), Gaps = 2/291 (0%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV +A DGPMPQTREHILL RQVGVPYI+VFLNK DM
Sbjct: 33 MITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVE 92
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDG 120
++Y+FPG+D PI++GSA ALEGD E IL L+ LD+YIP P RAID
Sbjct: 93 MEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEAKILELAGFLDSYIPEPERAIDK 150
Query: 121 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQG 180
FLLP+EDVFSISGRGTVVTGRVERGI++VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G
Sbjct: 151 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 210
Query: 181 QAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240
+AG+N+G+LLRG KRE++ERGQVLAKPG+IKPH F E+Y LSKDEGGRHTPFF YRP
Sbjct: 211 RAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRP 270
Query: 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
QFYFRTTDVTG+IELP+ EMVMPGDN+ + V LI+PIAM++GLRFAIREG
Sbjct: 271 QFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREG 321
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/291 (70%), Positives = 238/291 (81%), Gaps = 2/291 (0%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV +A DGPMPQTREHILL RQVGVPYI+VFLNK DM
Sbjct: 33 MITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVE 92
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDG 120
++Y+FPG+D PI++GSA ALEGD E IL L+ LD+YIP P RAID
Sbjct: 93 MEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEAKILELAGFLDSYIPEPERAIDK 150
Query: 121 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQG 180
FLLP+EDVFSISGRGTVVTGRVERGI++VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G
Sbjct: 151 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 210
Query: 181 QAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240
+AG+N+G+LLRG KRE++ERGQVLAKPG+IKPH F E+Y LSKDEGGRHTPFF YRP
Sbjct: 211 RAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRP 270
Query: 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
QFYFRTTDVTG+IELP+ EMVMPGDN+ + V LI+PIAM++GLRFAIREG
Sbjct: 271 QFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREG 321
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/300 (65%), Positives = 223/300 (74%), Gaps = 9/300 (3%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV SAADGPMPQTREHILLARQVGVPYIVVF+NK DM
Sbjct: 92 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVE 151
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALE----GDTGPLGEQS----ILSLSKALDTYIP 112
N+YEFPG+++P+I+GSA LALE GE I L A+D YIP
Sbjct: 152 MEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIP 211
Query: 113 TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK-DTVKTTCTGVE 171
TP R +D FL+PVEDVF+I+GRGTV TGR+ERG V+VG+E+EI+G+ +T KT TGVE
Sbjct: 212 TPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVE 271
Query: 172 MFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRH 231
M RK L +G AGDN+GLLLRG RE+VERGQVLAKPGSI PH F +Y L K+EGGRH
Sbjct: 272 MHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRH 331
Query: 232 TPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
T FFS YRPQFYFRTTDVTG + LP+ EMVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 332 TGFFSGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/300 (64%), Positives = 223/300 (74%), Gaps = 9/300 (3%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV SAADGPMPQTREHILLARQVGVPYIVVF+NK DM
Sbjct: 92 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVE 151
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALE----GDTGPLGEQS----ILSLSKALDTYIP 112
N+YEFPG+++P+I+GSA LALE GE I L A+D YIP
Sbjct: 152 MEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIP 211
Query: 113 TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK-DTVKTTCTGVE 171
TP R +D FL+PVEDVF+I+GRGTV TGR+ERG V+VG+E+EI+G+ +T KT TGVE
Sbjct: 212 TPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVE 271
Query: 172 MFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRH 231
M RK L +G AGDN+GLLLRG RE+VERGQVLAKPGSI PH F +Y L K+EGGRH
Sbjct: 272 MHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRH 331
Query: 232 TPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
T FF+ YRPQFYFRTTDVTG + LP+ EMVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 332 TGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/300 (64%), Positives = 223/300 (74%), Gaps = 9/300 (3%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV SAADGPMPQTREHILLARQVGVPYIVVF+NK DM
Sbjct: 92 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVE 151
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALE----GDTGPLGEQS----ILSLSKALDTYIP 112
N+YEFPG+++P+I+GSA LALE GE I L A+D YIP
Sbjct: 152 MEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIP 211
Query: 113 TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK-DTVKTTCTGVE 171
TP R +D FL+PVEDVF+I+GRGTV TGR+ERG V+VG+E+EI+G+ +T KT TGVE
Sbjct: 212 TPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVE 271
Query: 172 MFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRH 231
M RK L +G AGDN+GLLLRG RE+VERGQVLAKPGSI PH F +Y L K+EGGRH
Sbjct: 272 MHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRH 331
Query: 232 TPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
T FF+ YRPQFYFRTTDVTG + LP+ EMVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 332 TGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/300 (64%), Positives = 223/300 (74%), Gaps = 9/300 (3%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV SAADGPMPQTREHILLARQVGVPYIVVF+NK DM
Sbjct: 92 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVE 151
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALE----GDTGPLGEQS----ILSLSKALDTYIP 112
N+YEFPG+++P+I+GSA LALE GE I L A+D YIP
Sbjct: 152 MEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211
Query: 113 TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK-DTVKTTCTGVE 171
TP R +D FL+PVEDVF+I+GRGTV TGR+ERG V+VG+E+EI+G+ +T KT TGVE
Sbjct: 212 TPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVE 271
Query: 172 MFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRH 231
M RK L +G AGDN+G+LLRG RE+VERGQVLAKPGSI PH F +Y L K+EGGRH
Sbjct: 272 MHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRH 331
Query: 232 TPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
T FFS YRPQFYFRTTDVTG ++LP EMVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 332 TGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/300 (64%), Positives = 223/300 (74%), Gaps = 9/300 (3%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV SAADGPMPQTREHILLARQVGVPYIVVF+NK DM
Sbjct: 92 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVE 151
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALE----GDTGPLGEQS----ILSLSKALDTYIP 112
N+YEFPG+++P+I+GSA LALE GE I L A+D YIP
Sbjct: 152 MEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211
Query: 113 TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK-DTVKTTCTGVE 171
TP R +D FL+PVEDVF+I+GRGTV TGR+ERG V+VG+E+EI+G+ +T KT TGVE
Sbjct: 212 TPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVE 271
Query: 172 MFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRH 231
M RK L +G AGDN+G+LLRG RE+VERGQVLAKPGSI PH F +Y L K+EGGRH
Sbjct: 272 MHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRH 331
Query: 232 TPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
T FFS YRPQFYFRTTDVTG ++LP EMVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 332 TGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/300 (64%), Positives = 223/300 (74%), Gaps = 9/300 (3%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV SAADGPMPQTREHILLARQVGVPYIVVF+NK DM
Sbjct: 92 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVE 151
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALE----GDTGPLGEQS----ILSLSKALDTYIP 112
N+YEFPG+++P+I+GSA LALE GE I L A+D YIP
Sbjct: 152 MEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211
Query: 113 TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK-DTVKTTCTGVE 171
TP R +D FL+PVEDVF+I+GRGTV TGR+ERG V+VG+E+EI+G+ +T KT TGVE
Sbjct: 212 TPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVE 271
Query: 172 MFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRH 231
M RK L +G AGDN+G+LLRG RE+VERGQVLAKPGSI PH F +Y L K+EGGRH
Sbjct: 272 MHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRH 331
Query: 232 TPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
T FFS YRPQFYFRTTDVTG ++LP EMVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 332 TGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/300 (64%), Positives = 223/300 (74%), Gaps = 9/300 (3%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV SAADGPMPQTREHILLARQVGVPYIVVF+NK DM
Sbjct: 92 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVE 151
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALE----GDTGPLGEQS----ILSLSKALDTYIP 112
N+YEFPG+++P+I+GSA LALE GE I L A+D YIP
Sbjct: 152 MEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211
Query: 113 TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK-DTVKTTCTGVE 171
TP R +D FL+PVEDVF+I+GRGTV TGR+ERG V+VG+E+EI+G+ +T KT TGVE
Sbjct: 212 TPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVE 271
Query: 172 MFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRH 231
M RK L +G AGDN+G+LLRG RE+VERGQVLAKPGSI PH F +Y L K+EGGRH
Sbjct: 272 MHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRH 331
Query: 232 TPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
T FFS YRPQFYFRTTDVTG ++LP EMVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 332 TGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 380 bits (976), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/300 (64%), Positives = 223/300 (74%), Gaps = 9/300 (3%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV SAADGPMPQTREHILLARQVGVPYIVVF+NK DM
Sbjct: 92 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVE 151
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALE----GDTGPLGEQS----ILSLSKALDTYIP 112
N+YEFPG+++P+I+GSA LALE GE I L A+D YIP
Sbjct: 152 MEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211
Query: 113 TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK-DTVKTTCTGVE 171
TP R +D FL+PVEDVF+I+GRGTV TGR+ERG V+VG+E+EI+G+ +T +T TGVE
Sbjct: 212 TPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVE 271
Query: 172 MFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRH 231
M RK L +G AGDN+G+LLRG RE+VERGQVLAKPGSI PH F +Y L K+EGGRH
Sbjct: 272 MHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRH 331
Query: 232 TPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
T FFS YRPQFYFRTTDVTG ++LP EMVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 332 TGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/300 (64%), Positives = 223/300 (74%), Gaps = 9/300 (3%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV SAADGPMPQTREHILLARQVGVPYIVVF+NK DM
Sbjct: 92 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVE 151
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALE----GDTGPLGEQS----ILSLSKALDTYIP 112
N+YEFPG+++P+I+GSA LALE GE I L A+D YIP
Sbjct: 152 MEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211
Query: 113 TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK-DTVKTTCTGVE 171
TP R +D FL+PVEDVF+I+GRGTV TGR+ERG V+VG+E+EI+G+ +T +T TGVE
Sbjct: 212 TPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVE 271
Query: 172 MFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRH 231
M RK L +G AGDN+G+LLRG RE+VERGQVLAKPGSI PH F +Y L K+EGGRH
Sbjct: 272 MHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRH 331
Query: 232 TPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
T FFS YRPQFYFRTTDVTG ++LP EMVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 332 TGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/300 (64%), Positives = 223/300 (74%), Gaps = 9/300 (3%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV SAADGPMPQTREHILLARQVGVPYIVVF+NK DM
Sbjct: 93 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVE 152
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALE----GDTGPLGEQS----ILSLSKALDTYIP 112
N+YEFPG+++P+I+GSA LALE GE I L A+D YIP
Sbjct: 153 MEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 212
Query: 113 TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK-DTVKTTCTGVE 171
TP R +D FL+PVEDVF+I+GRGTV TGR+ERG V+VG+E+EI+G+ +T +T TGVE
Sbjct: 213 TPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVE 272
Query: 172 MFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRH 231
M RK L +G AGDN+G+LLRG RE+VERGQVLAKPGSI PH F +Y L K+EGGRH
Sbjct: 273 MHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRH 332
Query: 232 TPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
T FFS YRPQFYFRTTDVTG ++LP EMVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 333 TGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREG 392
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 345 bits (885), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 180/300 (60%), Positives = 210/300 (70%), Gaps = 9/300 (3%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITGAAQMDGAILV SAADG M QTREHILLARQVGV YIVVF+NK DM
Sbjct: 92 MITGAAQMDGAILVVSAADGRMRQTREHILLARQVGVRYIVVFMNKVDMVDDRELLDLVE 151
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALE----GDTGPLGEQS----ILSLSKALDTYIP 112
N+YEF G+++ +I+GSA LALE GE I L A+D YI
Sbjct: 152 MEVRDLLNQYEFRGDEVRVIRGSALLALEEMHKNRKTKRGENEWVDKIWELLDAIDEYIR 211
Query: 113 TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGI-KDTVKTTCTGVE 171
T R +D FL+ VEDVF+I+GRGTV TGR+ERG V+VG+E+EI+G+ ++T KT TGVE
Sbjct: 212 TRVRDVDKRFLMRVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLARETRKTVVTGVE 271
Query: 172 MFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRH 231
M RK L +G AGDN+GLLLRG RE+VERGQVLAK GSI H F +Y L K+EGGRH
Sbjct: 272 MHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKRGSITRHTKFEASVYILKKEEGGRH 331
Query: 232 TPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
T FF+ YR QFYFRTTDVTG + L + EMVM GDNV TV LI +A+EEGLRFAIREG
Sbjct: 332 TGFFTGYRRQFYFRTTDVTGVVRLRQGVEMVMRGDNVTFTVELIKRVALEEGLRFAIREG 391
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 296 bits (758), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/291 (49%), Positives = 197/291 (67%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
MITG A +DG ILV +A DGPMPQTREH+LLARQ+GV ++VV++NKAD
Sbjct: 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVE 142
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDG 120
++ + G + PII GSA ALE LG +S+ L A+DTYIP P R ++
Sbjct: 143 LEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEK 202
Query: 121 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQG 180
FLLPVE V+SI GRGTVVTG +ERGI++ G+E E +G ++T TG+EMF K LD+
Sbjct: 203 PFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRA 262
Query: 181 QAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240
+AGDN+G L+RG KRED+ RG V+AKPGSI+PH+ ++Y L+K+EGGRH PF S++ P
Sbjct: 263 EAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFMP 322
Query: 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
+ T D+ I LP KE+ MPG+++ +T+ L P+ +E+G RF +R+G
Sbjct: 323 VMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDG 373
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/290 (48%), Positives = 191/290 (65%)
Query: 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXX 61
ITG A +DG ILV +A DGP PQTREH+LLARQ+GV ++VV++NKAD
Sbjct: 95 ITGTAPLDGCILVVAANDGPXPQTREHLLLARQIGVEHVVVYVNKADAVQDSEXVELVEL 154
Query: 62 XXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGA 121
++ + G + PII GSA ALE LG +S+ L A+DTYIP P R ++
Sbjct: 155 EIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKP 214
Query: 122 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQ 181
FLLPVE V+SI GRGTVVTG +ERGI++ G+E E +G ++T TG+E F K LD+ +
Sbjct: 215 FLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEXFHKSLDRAE 274
Query: 182 AGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQ 241
AGDN+G L+RG KRED+ RG V AKPGSI+PH+ ++Y L+K+EGGRH PF S++ P
Sbjct: 275 AGDNLGALVRGLKREDLRRGLVXAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFXPV 334
Query: 242 FYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 291
+ T D I LP KE+ PG+++ +T+ L P +E+G RF +R+G
Sbjct: 335 XFSLTWDXACRIILPPGKELAXPGEDLKLTLILRQPXILEKGQRFTLRDG 384
>pdb|2JVV|A Chain A, Solution Structure Of E. Coli Nusg Carboxyterminal Domain
Length = 181
Score = 195 bits (495), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 123/175 (70%)
Query: 327 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFF 386
KKRWYV+ ++SG E V L E I M+ FG ++VPTEE+V+++ Q+ +++FF
Sbjct: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65
Query: 387 PGYVLIEMEMTDESWHLVKNTKKVTGFIGGKSNRPTPXXXXXXXXXXXXXXXGVEKPRPK 446
PGYVL++M M D SWHLV++ +V GFIGG S+RP P +KPRPK
Sbjct: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125
Query: 447 ILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 501
L++ E+VR+ DGPF DF+G +EEV+YEKSR++VSV+IFGRATPVEL+F+QVEK
Sbjct: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>pdb|2K06|A Chain A, Solution Structure Of The Aminoterminal Domain Of E. Coli
Nusg
Length = 123
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 68/97 (70%)
Query: 327 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFF 386
KKRWYV+ ++SG E V L E I M+ FG ++VPTEE+V+++ Q+ +++FF
Sbjct: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65
Query: 387 PGYVLIEMEMTDESWHLVKNTKKVTGFIGGKSNRPTP 423
PGYVL++M M D SWHLV++ +V GFIGG S+RP P
Sbjct: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAP 102
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 153/324 (47%), Gaps = 44/324 (13%)
Query: 1 MITGAAQMDGAILVCSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMXXXX 53
MITGA+Q D AILV SA G QTREH+LLAR +G+ I+V +NK D
Sbjct: 101 MITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVN 160
Query: 54 XXXXXXXXXXXXXXNKYEFPG---NDIPIIKGSAKLALEGDTGPLGEQSI-------LSL 103
+ G + IP I SA +GD L E+S +L
Sbjct: 161 YDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSA---WKGDN--LIERSPNMPWYNGPTL 215
Query: 104 SKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTV 163
+ALD P P + +D +PV++V+SI G GTV GRVE G++RVG+ +++ + V
Sbjct: 216 VEALDQLQP-PAKPVDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGD--KVVFMPPGV 272
Query: 164 KTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQV---LAKPGSIKPHKHFTGEI 220
+EM + L Q + GDNIG +RG + D++RG V L KP ++ + F I
Sbjct: 273 VGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGHLDKPPTVA--EEFEARI 330
Query: 221 YALSKDEGGR--HTPFFSNYRPQFYFRTTDVTGSIE------LPKNKEMVMPGDNVLITV 272
+ + +TP + R ++ ++ + +N + + GD ++
Sbjct: 331 FVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRF 390
Query: 273 RLINPIAMEEGL------RFAIRE 290
+ + P+ +E+ RFA+R+
Sbjct: 391 KPVKPLVVEKFSEIPQLGRFAMRD 414
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 153/324 (47%), Gaps = 44/324 (13%)
Query: 1 MITGAAQMDGAILVCSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMXXXX 53
MITGA+Q D AILV SA G QTREH+LLAR +G+ I+V +NK D
Sbjct: 104 MITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVN 163
Query: 54 XXXXXXXXXXXXXXNKYEFPG---NDIPIIKGSAKLALEGDTGPLGEQSI-------LSL 103
+ G + IP I SA +GD L E+S +L
Sbjct: 164 YDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSA---WKGDN--LIERSPNMPWYNGPTL 218
Query: 104 SKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTV 163
+ALD P P + +D +PV++V+SI G GTV GRVE G++RVG+ +++ + V
Sbjct: 219 VEALDQLQP-PAKPVDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGD--KVVFMPPGV 275
Query: 164 KTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQV---LAKPGSIKPHKHFTGEI 220
+EM + L Q + GDNIG +RG + D++RG V L KP ++ + F I
Sbjct: 276 VGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGHLDKPPTVA--EEFEARI 333
Query: 221 YALSKDEGGR--HTPFFSNYRPQFYFRTTDVTGSIE------LPKNKEMVMPGDNVLITV 272
+ + +TP + R ++ ++ + +N + + GD ++
Sbjct: 334 FVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRF 393
Query: 273 RLINPIAMEEGL------RFAIRE 290
+ + P+ +E+ RFA+R+
Sbjct: 394 KPVKPLVVEKFSEIPQLGRFAMRD 417
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 147/325 (45%), Gaps = 46/325 (14%)
Query: 1 MITGAAQMDGAILVCSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMXX-- 51
MITGA+Q D AILV SA G QTREHI+LA+ +G+ ++V +NK D+
Sbjct: 101 MITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160
Query: 52 -XXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSIL-----SLSK 105
Y F N + + +A GD +++ +L +
Sbjct: 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFV---PVVAPSGDNITHKSENMKWYNGPTLEE 217
Query: 106 ALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKT 165
LD + P + +D +P++DV+SISG GTV GRVE G+++VG+ +I+ +
Sbjct: 218 YLDQ-LELPPKPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGD--KIVFMPAGKVG 274
Query: 166 TCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKP-HKHFTGEIYALS 224
+E +D+ + GDNIG +RG +++D++RG V+ P + FT I +
Sbjct: 275 EVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVV- 333
Query: 225 KDEGGRHTPFFSNYRPQFYFRTTDVTGSI-------------ELPKNKEMVMPGDNVLIT 271
T + Y P + T V + E KN + + GD ++
Sbjct: 334 ----WHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVK 389
Query: 272 VRLINPIAMEEGL------RFAIRE 290
+ I P+ +E+ RFA+R+
Sbjct: 390 FKPIKPLCVEKYNEFPPLGRFAMRD 414
>pdb|2LQ8|A Chain A, Domain Interaction In Thermotoga Maritima Nusg
Length = 177
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 105/180 (58%), Gaps = 11/180 (6%)
Query: 327 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFF 386
KK+WY++ + SG E+ V+ + +++ G++ GRI++P + + +KS ++ F
Sbjct: 4 KKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIP----IRGGQRRKS---EKLF 56
Query: 387 PGYVLIEMEMTDESWHLVKNTKKVTGFIG-GKSNRPTPXXXXXXXXXXXXXXXGVEKPRP 445
PGYV +EM M DE+++ V++ V GF+ G P EK +P
Sbjct: 57 PGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLEEYEEKKKP 116
Query: 446 ---KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 502
++ +++ ++V+I GPF DF+G I+E++ E+ ++V+VTIFGR TPV L ++VEKI
Sbjct: 117 VKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEVEKI 176
>pdb|2KVQ|G Chain G, Solution Structure Of Nuse:nusg-Ctd Complex
Length = 63
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 52/58 (89%)
Query: 444 RPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 501
RPK L++ E+VR+ DGPF DF+G +EEV+YEKSR++VSV+IFGRATPVEL+F+QVEK
Sbjct: 5 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 62
>pdb|1NZ8|A Chain A, Solution Structure Of The N-Utilisation Substance G (Nusg)
N-Terminal (Ngn) Domain From Thermus Thermophilus
Length = 119
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 65/100 (65%), Gaps = 7/100 (7%)
Query: 330 WYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKK-NQKSVIKKRFFPG 388
WY +H+ G E+ + L +RI G+Q K ++L+PTEE+V++++ +K V++K+ FPG
Sbjct: 4 WYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFPG 63
Query: 389 YVLIEMEMTD-----ESWHLVKNTKKVTGFIGGKSNRPTP 423
Y+ I+M++ D E+W +V+ T +TGF+G RP P
Sbjct: 64 YLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGA-GMRPVP 102
>pdb|1M1G|A Chain A, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
pdb|1M1G|B Chain B, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
pdb|1M1G|C Chain C, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
pdb|1M1G|D Chain D, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
pdb|1M1H|A Chain A, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group I222
pdb|1NPP|A Chain A, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
pdb|1NPP|B Chain B, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
pdb|1NPP|C Chain C, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
pdb|1NPP|D Chain D, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
pdb|1NPR|A Chain A, Crystal Structure Of Aquifex Aeolicus Nusg In C222(1)
Length = 248
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 7/131 (5%)
Query: 374 KKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNTKKV--TGFIGGKSNRPTPXXXXXXXX 431
K K V+ + FPGY+LI+ M D+ ++ T V +GGK P P
Sbjct: 123 KTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGK---PVPLKEEEVQN 179
Query: 432 XXXXXXXGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATP 491
GV KP K+ ++ + VR+ +GPF +F+G +EEV+ EK ++ V ++IFGR TP
Sbjct: 180 ILNQIKRGV-KPS-KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTP 237
Query: 492 VELEFNQVEKI 502
VEL+F+QVEKI
Sbjct: 238 VELDFDQVEKI 248
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 327 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKS 379
+K+WY + G E + L++ + G++ ++VP EE V ++ K
Sbjct: 10 EKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKE 62
>pdb|2XHC|A Chain A, Crystal Structure Of Thermotoga Maritima N-utilization
Substance G (nusg)
Length = 352
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Query: 382 KKRFFPGYVLIEMEMTDESWHLVKNTKKVTGFIG-GKSNRPTPXXXXXXXXXXXXXXXGV 440
+++ FPGYV +EM M DE+++ V++ V GF+ G P
Sbjct: 228 RRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLEEYE 287
Query: 441 EKPRP---KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFN 497
EK +P ++ +++ ++V+I GPF DF+G I+E++ E+ ++V+VTIFGR TPV L +
Sbjct: 288 EKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVS 347
Query: 498 QVEKI 502
+VEKI
Sbjct: 348 EVEKI 352
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 31/46 (67%)
Query: 327 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVD 372
KK+WY++ + SG E+ V+ + +++ G++ GRI++P E ++D
Sbjct: 2 KKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPEEVVLD 47
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 15/206 (7%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
+++ A +D A++V A +GP QT EH+L+ +P IVV + K+D
Sbjct: 90 VVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVV-ITKSDNAGTEEIKRTEM 148
Query: 61 XXXXXXXNKYEFPGND-IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAID 119
+ + + IPI SAK D L I +L+ A R +
Sbjct: 149 IMKSILQSTHNLKNSSIIPI---SAKTGFGVD--ELKNLIITTLNNA------EIIRNTE 197
Query: 120 GAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQ 179
F +P++ F I G GTVVTG + +GIV+VG+EL+++ I + T ++ F++ + +
Sbjct: 198 SYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPI--NMSTKVRSIQYFKESVME 255
Query: 180 GQAGDNIGLLLRGTKREDVERGQVLA 205
+AGD +G+ ++G + + RG +L
Sbjct: 256 AKAGDRVGMAIQGVDAKQIYRGXILT 281
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 135/334 (40%), Gaps = 53/334 (15%)
Query: 1 MITGAAQMDGAILVCSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMXXXX 53
MITG +Q D AIL+ + G QTREH LLA +GV ++V +NK D
Sbjct: 102 MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWD 161
Query: 54 XXXXXXXXXXXXX------XNKYEFP--------GNDI-------PIIKGSAKLALEGDT 92
N P G+++ P KG K E
Sbjct: 162 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEK---ETKA 218
Query: 93 GPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGE 152
G + +++L +A+D I P+R D LP++DV+ I G GTV GRVE G+++ G
Sbjct: 219 GVVKGKTLL---EAIDA-IEQPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG- 273
Query: 153 ELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVL--AKPGSI 210
+ + V T VEM + L+QG GDN+G ++ +++ RG V AK
Sbjct: 274 -MVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPP 332
Query: 211 KPHKHFTGEIYALSKDE--GGRHTPFFSNYRPQFYFR------TTDVTGSIELPKNKEMV 262
K F + L+ ++P + R D +L + + +
Sbjct: 333 KGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFL 392
Query: 263 MPGDNVLITVRLINPIAMEEGL------RFAIRE 290
GD L+ P+ +E RFA+R+
Sbjct: 393 KSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRD 426
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 104/227 (45%), Gaps = 26/227 (11%)
Query: 1 MITGAAQMDGAILVCSAADGPMP-------QTREHILLARQVGVPYIVVFLNKAD---MX 50
MI GA+Q D A+LV SA G QTREH +LA+ GV +++V +NK D +
Sbjct: 112 MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 171
Query: 51 XXXXXXXXXXXXXXXXXNKYEF-PGNDIPIIKGS----AKLALEGDTGP--LGEQSILSL 103
K F P DI + S A L + D P +G L
Sbjct: 172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIG----LPF 227
Query: 104 SKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTV 163
LD +P NR++DG LP+ D + GTVV G++E G + G++L ++ K V
Sbjct: 228 IPYLDN-LPNFNRSVDGPIRLPIVDKY--KDMGTVVLGKLESGSIFKGQQLVMMPNKHNV 284
Query: 164 KTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 210
+ G+ D G+N+ + L+G + E++ G +L P ++
Sbjct: 285 EV--LGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSNL 329
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 103/237 (43%), Gaps = 41/237 (17%)
Query: 1 MITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXX 59
M++GA+ MDGAILV +A + P PQT+EH++ +G+ I++ NK D+
Sbjct: 98 MLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENY 157
Query: 60 XXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAID 119
+ PII SA E +I L KA+ +IPTP R D
Sbjct: 158 EQIKEFVKGTI---AENAPIIPISAH----------HEANIDVLLKAIQDFIPTPKRDPD 204
Query: 120 GAFLLPVEDVFSISGRGT--------VVTGRVERGIVRVGEELEI-IGIKDT-------- 162
+ V F I+ GT V+ G + +G+ +VG+E+EI GIK T
Sbjct: 205 ATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWK 264
Query: 163 -VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGT------KREDVERGQVLAKPGSIKP 212
+ T + +L + G IG+ GT + D G V+ PG++ P
Sbjct: 265 PLTTKIVSLAAGNTILRKAHPGGLIGV---GTTLDPYLTKSDALTGSVVGLPGTLPP 318
>pdb|1NZ9|A Chain A, Solution Structure Of The N-Utilisation Substance G (Nusg)
C-Terminal (Ngc) Domain From Thermus Thermophilus
Length = 58
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 42/56 (75%)
Query: 446 KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 501
++ ++ + VR+ GPF DF+G + E+N E+ +V+V VTIFGR TPVEL+F+QV K
Sbjct: 2 QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 22/166 (13%)
Query: 1 MITGAAQMDGAILVCSAADG-PMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXX 59
M++GAA MDGAILV +A + P PQTREH + +GV +++ NK D+
Sbjct: 103 MLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQY 162
Query: 60 XXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAID 119
+ ++PII SA L + +I SL + ++ YI TP R +
Sbjct: 163 RQIKQFTKGTW---AENVPIIPVSA----------LHKINIDSLIEGIEEYIKTPYRDLS 209
Query: 120 GAFLLPVEDVFSISGRGT--------VVTGRVERGIVRVGEELEII 157
++ V F ++ GT V+ G + +G+ +V +E++++
Sbjct: 210 QKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVL 255
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 22/166 (13%)
Query: 1 MITGAAQMDGAILVCSAADG-PMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXX 59
M++GAA MDGAILV +A + P PQTREH + +GV +++ NK D+
Sbjct: 104 MLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQY 163
Query: 60 XXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAID 119
+ ++PII SA L + +I SL + ++ YI TP R +
Sbjct: 164 RQIKQFTKGTW---AENVPIIPVSA----------LHKINIDSLIEGIEEYIKTPYRDLS 210
Query: 120 GAFLLPVEDVFSISGRGT--------VVTGRVERGIVRVGEELEII 157
++ V F ++ GT V+ G + +G+ +V +E++++
Sbjct: 211 QKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVL 256
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 22/166 (13%)
Query: 1 MITGAAQMDGAILVCSAADG-PMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXX 59
M++GAA MDGAILV +A + P PQTREH + +GV +++ NK D+
Sbjct: 98 MLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQY 157
Query: 60 XXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAID 119
+ ++PII SA L + +I SL + ++ YI TP R +
Sbjct: 158 RQIKQFTKGTW---AENVPIIPVSA----------LHKINIDSLIEGIEEYIKTPYRDLS 204
Query: 120 GAFLLPVEDVFSISGRGT--------VVTGRVERGIVRVGEELEII 157
++ V F ++ GT V+ G + +G+ +V +E++++
Sbjct: 205 QKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVL 250
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 22/166 (13%)
Query: 1 MITGAAQMDGAILVCSAADG-PMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXX 59
M++GAA MDGAILV +A + P PQTREH + +GV +++ NK D+
Sbjct: 92 MLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQY 151
Query: 60 XXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAID 119
+ ++PII SA L + +I SL + ++ YI TP R +
Sbjct: 152 RQIKQFTKGTW---AENVPIIPVSA----------LHKINIDSLIEGIEEYIKTPYRDLS 198
Query: 120 GAFLLPVEDVFSISGRGT--------VVTGRVERGIVRVGEELEII 157
++ V F ++ GT V+ G + +G+ +V +E++++
Sbjct: 199 QKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVL 244
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 41/237 (17%)
Query: 1 MITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXX 59
M+ GA+ MDGAILV +A + P PQTREH++ + +G I++ NK ++
Sbjct: 101 MLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENY 160
Query: 60 XXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAID 119
+ PII SA L +I L KA++ +IPTP R +
Sbjct: 161 RQIKEFIKGTV---AENAPIIPISA----------LHGANIDVLVKAIEEFIPTPKRDSN 207
Query: 120 GAFLLPVEDVFSISGRGT--------VVTGRVERGIVRVGEELEI-IGIK---------D 161
+ V F ++ GT V+ G + +G ++VG+E+EI G+ +
Sbjct: 208 KPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYE 267
Query: 162 TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTK------REDVERGQVLAKPGSIKP 212
+ T ++ + +++ G +G+ GTK + D+ G V+ KPG + P
Sbjct: 268 PITTEIVSLQAGGQFVEEAYPGGLVGI---GTKLDPYLTKGDLMAGNVVGKPGKLPP 321
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 41/237 (17%)
Query: 1 MITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXX 59
M+ GA+ MDGAILV +A + P PQTREH++ + +G I++ NK ++
Sbjct: 100 MLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENY 159
Query: 60 XXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAID 119
+ PII SA L +I L KA++ +IPTP R +
Sbjct: 160 RQIKEFIEGTV---AENAPIIPISA----------LHGANIDVLVKAIEDFIPTPKRDPN 206
Query: 120 GAFLLPVEDVFSISGRGT--------VVTGRVERGIVRVGEELEI-IGIK---------D 161
+ V F ++ GT V+ G + +G ++VG+E+EI G+ +
Sbjct: 207 KPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYE 266
Query: 162 TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTK------REDVERGQVLAKPGSIKP 212
+ T ++ + +++ G +G+ GTK + D+ G V+ KPG + P
Sbjct: 267 PITTEIVSLQAGGQFVEEAYPGGLVGV---GTKLDPYLTKGDLMAGNVVGKPGKLPP 320
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 41/237 (17%)
Query: 1 MITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXX 59
M+ GA+ MDGAILV +A + P PQTREH++ + +G I++ NK ++
Sbjct: 100 MLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENY 159
Query: 60 XXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAID 119
+ PII SA L +I L KA++ +IPTP R +
Sbjct: 160 RQIKEFIEGTV---AENAPIIPISA----------LHGANIDVLVKAIEDFIPTPKRDPN 206
Query: 120 GAFLLPVEDVFSISGRGT--------VVTGRVERGIVRVGEELEI-IGIK---------D 161
+ V F ++ GT V+ G + +G ++VG+E+EI G+ +
Sbjct: 207 KPPKMLVLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYE 266
Query: 162 TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTK------REDVERGQVLAKPGSIKP 212
+ T ++ + +++ G +G+ GTK + D+ G V+ KPG + P
Sbjct: 267 PITTEIVSLQAGGQFVEEAYPGGLVGV---GTKLDPYLTKGDLMAGNVVGKPGKLPP 320
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 41/236 (17%)
Query: 2 ITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXX 60
+ GA+ DGAILV +A + P PQTREH+ + +G I++ NK ++
Sbjct: 101 LAGASLXDGAILVIAANEPCPRPQTREHLXALQIIGQKNIIIAQNKIELVDKEKALENYR 160
Query: 61 XXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDG 120
+ PII SA L +I L KA++ +IPTP R +
Sbjct: 161 QIKEFIEGTV---AENAPIIPISA----------LHGANIDVLVKAIEDFIPTPKRDPNK 207
Query: 121 AFLLPVEDVFSISGRGT--------VVTGRVERGIVRVGEELEI-IGIK---------DT 162
V F ++ GT V+ G + +G ++VG+E+EI G+ +
Sbjct: 208 PPKXLVLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEP 267
Query: 163 VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTK------REDVERGQVLAKPGSIKP 212
+ T ++ + +++ G +G+ GTK + D+ G V+ KPG + P
Sbjct: 268 ITTEIVSLQAGGQFVEEAYPGGLVGV---GTKLDPYLTKGDLXAGNVVGKPGKLPP 320
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 25/222 (11%)
Query: 1 MITGAAQMDGAILVCSAADGPMP-------QTREHILLARQVGVPYIVVFLNKAD----- 48
MI GA+Q D +LV SA G QTREH +LAR G+ ++VV +NK D
Sbjct: 138 MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 197
Query: 49 -----MXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKG-SAKLALEGDTGPLGEQSILS 102
+K + + G + K ++ P + S
Sbjct: 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGP--S 255
Query: 103 LSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDT 162
L + LD+ + R ++ F++P+ + GT++ G++E G ++ + ++ I T
Sbjct: 256 LLEYLDS-MTHLERKVNAPFIMPIASKY--KDLGTILEGKIEAGSIKKNSNVLVMPINQT 312
Query: 163 VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVL 204
++ T E + + GD + L +RG DV+ G VL
Sbjct: 313 LEVTAIYDEADEE-ISSSICGDQVRLRVRGDD-SDVQTGYVL 352
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 73/174 (41%), Gaps = 29/174 (16%)
Query: 1 MITGAAQMDGAILVCSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMXXXX 53
MI GA+ D A+LV ++ QTREH L R +G+ IVV +NK D+
Sbjct: 272 MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWS 331
Query: 54 XXXXXXXXXXXX---------XXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQ----SI 100
+ F +PI S ++ D+ L + ++
Sbjct: 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHF----VPISAISGTNLIQKDSSDLYKWYKGPTL 387
Query: 101 LSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEEL 154
LS ALD +P P + L ++DV+ S R VTGRVE G V+V + L
Sbjct: 388 LS---ALDQLVP-PEKPYRKPLRLSIDDVYR-SPRSVTVTGRVEAGNVQVNQVL 436
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 11/148 (7%)
Query: 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXX 63
G D ILV +A DG M QT E I A+ VP IV+ +NK D
Sbjct: 72 GTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKAEADPEKVKKELLA 130
Query: 64 XXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFL 123
E G D+ + SA L G+ ++ ++L++ L+ P A++G +
Sbjct: 131 YDVV--CEDYGGDVQAVHVSA---LTGENMMALAEATIALAEMLELK-ADPTGAVEGTVI 184
Query: 124 LPVEDVFSISGRGTVVTGRVERGIVRVG 151
+ F+ GRG V T ++RG +R G
Sbjct: 185 ----ESFTDKGRGPVTTAIIQRGTLRKG 208
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM 49
TGA+ D AI++ A G QTR H +A +G+ +IVV +NK D+
Sbjct: 123 TGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKXDL 169
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 48
GA D ILV +A DG MPQT E I A+ VP I+V +NK D
Sbjct: 75 GAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMD 118
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 8 MDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 48
+DGAIL+ SA DG QTR R++G+P I F+NK D
Sbjct: 91 LDGAILLISAKDGVQAQTRILFHALRKMGIPTI-FFINKID 130
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 91/235 (38%), Gaps = 35/235 (14%)
Query: 2 ITGAAQMDGAILVCSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMXXXXX 54
I G +Q D AIL + QT+EH+LLA +G+ +++ +NK D
Sbjct: 263 IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322
Query: 55 XXXXXXXXX----XXXXNKYEFPGNDIPII----KGSAKLALEGD-----TGPLGEQSIL 101
+E N +PI +G K+ + GP +++
Sbjct: 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGP----NLM 378
Query: 102 SLSKALDTYIPTPNRAI--DGAFLLPVEDVF---SISGRGTVVTGRVERGIVRVGEELEI 156
S + I N I D FL V ++ S +V+G++E G ++ GE L I
Sbjct: 379 STLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTI 438
Query: 157 I-----GIKDTVKT-TCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 205
I D ++ + G + D GD + L LR ED++ G + A
Sbjct: 439 YPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAA 493
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 91/235 (38%), Gaps = 35/235 (14%)
Query: 2 ITGAAQMDGAILVCSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMXXXXX 54
I G +Q D AIL + QT+EH+LLA +G+ +++ +NK D
Sbjct: 129 IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 188
Query: 55 XXXXXXXXX----XXXXNKYEFPGNDIPII----KGSAKLALEGD-----TGPLGEQSIL 101
+E N +PI +G K+ + GP +++
Sbjct: 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGP----NLM 244
Query: 102 SLSKALDTYIPTPNRAI--DGAFLLPVEDVF---SISGRGTVVTGRVERGIVRVGEELEI 156
S + I N I D FL V ++ S +V+G++E G ++ GE L I
Sbjct: 245 STLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTI 304
Query: 157 I-----GIKDTVKT-TCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 205
I D ++ + G + D GD + L LR ED++ G + A
Sbjct: 305 YPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAA 359
>pdb|2ELF|A Chain A, Crystal Structure Of The Selb-Like Elongation Factor
Ef-Pyl From Methanosarcina Mazei
Length = 370
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 126 VEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDN 185
++ F+++G+G VV G V++GI + ++ +I + ++ ++ +D AG
Sbjct: 197 IDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEI--RSIQSHDVDIDSAPAGTR 254
Query: 186 IGLLLRGTKREDVERGQVLA 205
+G L+ + +D+ERG +++
Sbjct: 255 VGXRLKNVQAKDIERGFIIS 274
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 2 ITGAAQMDGAILVCSAADGPMP-------QTREHILLARQVGVPYIVVFLNKAD 48
I G +Q D AIL + QT+EH LLA +G+ +++ NK D
Sbjct: 129 IXGISQADXAILCVDCSTNAFESGFDLDGQTKEHXLLASSLGIHNLIIAXNKXD 182
>pdb|3E1Y|E Chain E, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|F Chain F, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|G Chain G, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|H Chain H, Crystal Structure Of Human Erf1ERF3 COMPLEX
Length = 204
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 124 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAG 183
LP+ D + GTVV G++E G + G++L ++ K V+ G+ D G
Sbjct: 9 LPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVL--GILSDDVETDTVAPG 64
Query: 184 DNIGLLLRGTKREDVERGQVLAKPGSI 210
+N+ + L+G + E++ G +L P ++
Sbjct: 65 ENLKIRLKGIEEEEILPGFILCDPNNL 91
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 8 MDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 48
+DGA+ V A G PQT A GVP I VF+NK D
Sbjct: 99 LDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMD 138
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 8 MDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 48
+DGA+ V A G PQT A GVP I VF+NK D
Sbjct: 99 LDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMD 138
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 8 MDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 48
+DGA+ V A G PQT A GVP I VF+NK D
Sbjct: 99 LDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMD 138
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 8 MDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 48
+DGA+ V A G PQT A GVP I VF+NK D
Sbjct: 99 LDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMD 138
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 8 MDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 48
+DGA++V G PQ+ A + GVP I V++NK D
Sbjct: 109 LDGAVVVFCGTSGVEPQSETVWRQANKYGVPRI-VYVNKMD 148
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 48
G A D AIL+ +G PQT+E + + R P++V NK D
Sbjct: 90 GGALADLAILIVDINEGFKPQTQEALNILRXYRTPFVVA-ANKID 133
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 48
G A D AIL+ +G PQT+E + + R P++V NK D
Sbjct: 90 GGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVA-ANKID 133
>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|D Chain D, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|E Chain E, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|J Chain J, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 201
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 122 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQ 181
F++P+ + GT++ G++E G ++ + ++ I T++ T E + +
Sbjct: 8 FIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEE-ISSSI 64
Query: 182 AGDNIGLLLRGTKREDVERGQVL 204
GD + L +RG DV+ G VL
Sbjct: 65 CGDQVRLRVRG-DDSDVQTGYVL 86
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 275 INPIAMEEGLRFAIREGVQQFIQDNLLTKEIVNSNKINIDK-GKEYIERSINNKKRWYVI 333
I+P + G R A+RE ++ FI + L T ++D GKE + +I
Sbjct: 120 IHPTTIITGFRVALREAIR-FINEVLST---------SVDTLGKETLINIAKTSMSSKII 169
Query: 334 HSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVL 391
+ S N+ +++ + + Q G I P + + +K + KS + PGY L
Sbjct: 170 GADSDFFSNM---VVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYAL 224
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 4 GAAQMDGAILVCSAADGPMPQTREHI 29
GA D +LV +A DG MPQT E I
Sbjct: 71 GAQATDIVVLVVAADDGVMPQTIEAI 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,284,355
Number of Sequences: 62578
Number of extensions: 605655
Number of successful extensions: 1722
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1525
Number of HSP's gapped (non-prelim): 124
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)