Query psy15224
Match_columns 502
No_of_seqs 406 out of 3735
Neff 9.0
Searched_HMMs 46136
Date Sat Aug 17 00:31:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 8.6E-56 1.9E-60 426.8 33.9 292 1-303 102-426 (428)
2 COG0050 TufB GTPases - transla 100.0 7.2E-56 1.6E-60 405.4 27.6 300 1-302 92-391 (394)
3 KOG0460|consensus 100.0 6.6E-56 1.4E-60 413.0 25.0 312 1-312 134-445 (449)
4 PRK12736 elongation factor Tu; 100.0 9.1E-52 2E-56 420.6 39.0 301 1-303 92-392 (394)
5 TIGR00485 EF-Tu translation el 100.0 3.3E-51 7.1E-56 417.3 38.5 301 1-303 92-392 (394)
6 PLN03126 Elongation factor Tu; 100.0 2.4E-51 5.2E-56 422.2 37.0 301 1-303 161-476 (478)
7 PLN03127 Elongation factor Tu; 100.0 3.2E-51 7E-56 419.5 37.8 303 1-303 141-445 (447)
8 PRK12735 elongation factor Tu; 100.0 6.7E-51 1.4E-55 414.5 39.5 301 1-303 92-394 (396)
9 PRK00049 elongation factor Tu; 100.0 8.3E-51 1.8E-55 413.4 39.9 301 1-303 92-394 (396)
10 CHL00071 tufA elongation facto 100.0 2.6E-50 5.7E-55 411.9 37.6 301 1-303 92-407 (409)
11 PLN00043 elongation factor 1-a 100.0 5.6E-50 1.2E-54 410.9 37.1 293 1-304 102-430 (447)
12 PTZ00141 elongation factor 1- 100.0 8.1E-50 1.8E-54 410.1 36.9 293 1-304 102-430 (446)
13 COG2895 CysN GTPases - Sulfate 100.0 4.8E-48 1.1E-52 362.9 27.3 291 1-307 103-419 (431)
14 PRK12317 elongation factor 1-a 100.0 5E-47 1.1E-51 391.1 37.0 293 1-304 101-421 (425)
15 TIGR00483 EF-1_alpha translati 100.0 9.4E-47 2E-51 388.9 36.9 293 1-304 102-423 (426)
16 KOG0458|consensus 100.0 9.1E-46 2E-50 369.1 27.9 291 1-302 272-600 (603)
17 PRK05124 cysN sulfate adenylyl 100.0 3.6E-44 7.8E-49 371.0 35.5 317 1-332 124-468 (474)
18 KOG0459|consensus 100.0 2.9E-44 6.2E-49 342.2 25.8 290 1-303 174-499 (501)
19 TIGR02034 CysN sulfate adenyly 100.0 3.1E-43 6.8E-48 359.0 33.4 284 1-300 97-406 (406)
20 PTZ00327 eukaryotic translatio 100.0 2E-42 4.4E-47 353.5 36.0 281 1-302 134-451 (460)
21 PRK05506 bifunctional sulfate 100.0 2.2E-41 4.9E-46 364.3 40.6 338 1-355 121-488 (632)
22 COG5258 GTPBP1 GTPase [General 100.0 4E-41 8.7E-46 318.6 30.1 278 6-303 225-526 (527)
23 PRK10512 selenocysteinyl-tRNA- 100.0 6E-41 1.3E-45 355.6 32.9 276 1-309 68-346 (614)
24 TIGR03680 eif2g_arch translati 100.0 9.2E-39 2E-43 326.5 35.1 278 1-300 97-405 (406)
25 PRK04000 translation initiatio 100.0 3.5E-38 7.5E-43 321.8 34.3 278 1-300 102-410 (411)
26 COG3276 SelB Selenocysteine-sp 100.0 3.4E-38 7.3E-43 307.2 26.9 271 1-303 67-339 (447)
27 TIGR00475 selB selenocysteine- 100.0 3.8E-37 8.1E-42 326.0 33.6 274 1-308 67-342 (581)
28 PRK05609 nusG transcription an 100.0 2E-37 4.2E-42 282.5 21.1 177 325-502 3-180 (181)
29 TIGR00922 nusG transcription t 100.0 2.8E-37 6E-42 278.8 19.5 171 330-501 1-172 (172)
30 KOG0463|consensus 100.0 8.6E-37 1.9E-41 288.1 22.8 282 7-308 244-551 (641)
31 COG0250 NusG Transcription ant 100.0 1.6E-36 3.6E-41 269.2 22.0 176 327-502 2-177 (178)
32 KOG1143|consensus 100.0 5.2E-36 1.1E-40 282.7 25.7 284 8-310 275-589 (591)
33 PRK09014 rfaH transcriptional 100.0 4E-36 8.7E-41 268.1 17.7 161 328-502 2-162 (162)
34 TIGR01955 RfaH transcriptional 100.0 5E-35 1.1E-39 260.9 17.4 159 330-500 1-159 (159)
35 TIGR01956 NusG_myco NusG famil 100.0 1.9E-34 4.1E-39 264.6 21.0 172 329-500 1-257 (258)
36 COG5257 GCD11 Translation init 100.0 3.3E-32 7.1E-37 253.1 28.5 280 1-302 103-413 (415)
37 PRK08559 nusG transcription an 100.0 1.9E-27 4.2E-32 208.4 15.0 143 326-502 4-148 (153)
38 KOG0461|consensus 99.9 4.6E-26 1E-30 213.6 16.3 268 2-284 88-380 (522)
39 TIGR01394 TypA_BipA GTP-bindin 99.9 6.9E-25 1.5E-29 232.0 23.2 202 2-210 82-290 (594)
40 TIGR00405 L26e_arch ribosomal 99.9 2E-25 4.3E-30 195.2 14.8 140 331-502 1-140 (145)
41 COG1217 TypA Predicted membran 99.9 1.2E-23 2.6E-28 204.9 20.6 200 4-210 88-294 (603)
42 PRK10218 GTP-binding protein; 99.9 2E-23 4.2E-28 220.6 21.9 200 3-209 87-293 (607)
43 KOG0466|consensus 99.9 4E-24 8.7E-29 197.5 8.8 280 1-302 142-458 (466)
44 smart00738 NGN In Spt5p, this 99.9 1.8E-22 3.9E-27 167.3 12.3 105 329-434 1-105 (106)
45 TIGR01393 lepA GTP-binding pro 99.9 2E-21 4.4E-26 206.3 22.4 186 3-209 89-278 (595)
46 PRK05433 GTP-binding protein L 99.9 4.8E-21 1E-25 203.7 22.2 186 3-209 93-282 (600)
47 COG0481 LepA Membrane GTPase L 99.9 3.1E-21 6.8E-26 188.7 17.9 242 3-285 95-344 (603)
48 KOG0462|consensus 99.9 6.5E-21 1.4E-25 189.5 17.6 186 4-208 145-332 (650)
49 TIGR00487 IF-2 translation ini 99.8 2E-18 4.3E-23 182.6 21.7 180 3-206 154-340 (587)
50 PF02357 NusG: Transcription t 99.8 2E-20 4.4E-25 150.6 5.0 89 328-427 1-92 (92)
51 PRK05306 infB translation init 99.8 1.8E-18 3.9E-23 187.0 19.9 181 3-207 356-543 (787)
52 PRK00007 elongation factor G; 99.8 2.5E-18 5.5E-23 187.1 20.7 188 2-208 93-394 (693)
53 PRK07560 elongation factor EF- 99.8 1.7E-18 3.8E-23 189.4 18.9 200 2-208 105-375 (731)
54 KOG0052|consensus 99.8 5.6E-19 1.2E-23 171.1 10.8 242 1-303 99-371 (391)
55 PRK12739 elongation factor G; 99.8 4.8E-18 1E-22 185.0 19.0 188 2-208 91-391 (691)
56 PRK04004 translation initiatio 99.8 1.4E-17 2.9E-22 176.7 21.3 160 3-173 90-284 (586)
57 PRK00741 prfC peptide chain re 99.8 3.5E-17 7.5E-22 171.4 19.8 189 3-208 98-380 (526)
58 CHL00189 infB translation init 99.8 2.9E-17 6.4E-22 176.0 19.0 182 3-207 314-501 (742)
59 TIGR00484 EF-G translation elo 99.8 4.7E-17 1E-21 177.5 20.6 187 3-208 94-392 (689)
60 PRK14845 translation initiatio 99.8 6.4E-17 1.4E-21 178.5 21.6 190 3-205 545-781 (1049)
61 TIGR00491 aIF-2 translation in 99.7 8.5E-17 1.8E-21 169.9 20.8 189 3-204 88-323 (590)
62 cd01884 EF_Tu EF-Tu subfamily. 99.7 1E-17 2.3E-22 153.9 12.2 112 1-114 82-195 (195)
63 PRK12740 elongation factor G; 99.7 5E-17 1.1E-21 177.4 19.3 187 3-208 79-373 (668)
64 cd03693 EF1_alpha_II EF1_alpha 99.7 2.3E-17 4.9E-22 132.0 11.5 89 119-209 2-90 (91)
65 PRK13351 elongation factor G; 99.7 1.2E-16 2.6E-21 174.7 20.9 187 3-208 92-390 (687)
66 TIGR00503 prfC peptide chain r 99.7 1.1E-16 2.3E-21 167.8 19.4 185 3-208 99-381 (527)
67 COG0480 FusA Translation elong 99.7 9E-17 1.9E-21 171.2 18.5 187 3-208 95-392 (697)
68 COG0532 InfB Translation initi 99.7 1.3E-16 2.9E-21 160.6 18.2 180 3-205 74-260 (509)
69 KOG1145|consensus 99.7 8.4E-17 1.8E-21 160.3 15.1 181 3-206 220-406 (683)
70 TIGR00490 aEF-2 translation el 99.7 1.7E-16 3.7E-21 173.4 16.4 198 2-208 104-374 (720)
71 cd03698 eRF3_II_like eRF3_II_l 99.7 2.2E-16 4.7E-21 124.1 11.4 83 121-206 1-83 (83)
72 cd03694 GTPBP_II Domain II of 99.7 3.5E-16 7.6E-21 123.9 10.8 85 122-206 1-87 (87)
73 KOG0465|consensus 99.7 3.2E-16 7E-21 157.9 12.6 188 3-209 123-422 (721)
74 COG4108 PrfC Peptide chain rel 99.7 4.4E-16 9.6E-21 151.6 13.1 188 5-209 102-383 (528)
75 cd03697 EFTU_II EFTU_II: Elong 99.7 3E-16 6.5E-21 124.5 9.8 86 122-207 1-86 (87)
76 cd04089 eRF3_II eRF3_II: domai 99.7 1.3E-15 2.8E-20 119.4 11.4 82 121-206 1-82 (82)
77 PLN00116 translation elongatio 99.6 9.4E-15 2E-19 162.0 19.0 202 1-208 115-471 (843)
78 PF03143 GTP_EFTU_D3: Elongati 99.6 3.4E-15 7.4E-20 121.3 11.2 88 210-302 2-97 (99)
79 cd03696 selB_II selB_II: this 99.6 6.4E-15 1.4E-19 115.9 10.7 83 122-206 1-83 (83)
80 cd03706 mtEFTU_III Domain III 99.6 1.7E-14 3.7E-19 116.1 13.3 90 213-302 3-92 (93)
81 PF00009 GTP_EFTU: Elongation 99.6 5.6E-15 1.2E-19 135.7 10.9 100 1-113 87-188 (188)
82 PTZ00416 elongation factor 2; 99.6 4.9E-14 1.1E-18 156.0 20.1 203 2-208 110-467 (836)
83 cd03695 CysN_NodQ_II CysN_NodQ 99.6 2.7E-14 5.9E-19 111.3 11.3 81 122-206 1-81 (81)
84 cd03707 EFTU_III Domain III of 99.6 5.9E-14 1.3E-18 112.3 11.9 88 213-300 3-90 (90)
85 cd03704 eRF3c_III This family 99.5 1.1E-13 2.4E-18 114.7 12.6 85 213-301 3-106 (108)
86 cd01883 EF1_alpha Eukaryotic e 99.5 6.8E-14 1.5E-18 131.6 11.8 107 2-111 95-216 (219)
87 cd03705 EF1_alpha_III Domain I 99.5 2.2E-13 4.7E-18 112.2 11.2 84 212-300 2-104 (104)
88 cd04166 CysN_ATPS CysN_ATPS su 99.5 2.2E-13 4.7E-18 127.1 10.9 103 2-109 95-203 (208)
89 cd04093 HBS1_C HBS1_C: this fa 99.5 5.9E-13 1.3E-17 110.3 11.9 86 212-302 2-106 (107)
90 KOG1144|consensus 99.5 1.8E-13 3.9E-18 140.5 9.9 166 3-179 559-771 (1064)
91 cd03708 GTPBP_III Domain III o 99.5 6.6E-13 1.4E-17 105.6 11.1 84 212-302 2-86 (87)
92 cd01513 Translation_factor_III 99.4 1.4E-12 3.1E-17 107.0 11.1 84 212-300 2-102 (102)
93 cd04094 selB_III This family r 99.4 3.1E-12 6.8E-17 103.7 12.8 95 201-300 1-97 (97)
94 cd04165 GTPBP1_like GTPBP1-lik 99.3 2.1E-11 4.6E-16 114.6 11.4 99 2-113 102-223 (224)
95 cd04095 CysN_NoDQ_III TCysN_No 99.3 3.3E-11 7.1E-16 99.0 10.2 83 212-300 2-103 (103)
96 cd03688 eIF2_gamma_II eIF2_gam 99.3 7.4E-11 1.6E-15 94.7 11.5 90 118-207 2-112 (113)
97 cd01888 eIF2_gamma eIF2-gamma 99.3 3.6E-11 7.7E-16 111.7 11.3 102 1-115 100-202 (203)
98 KOG0469|consensus 99.2 3.3E-11 7.2E-16 119.2 8.6 198 3-203 117-469 (842)
99 cd03692 mtIF2_IVc mtIF2_IVc: t 99.2 5.4E-10 1.2E-14 87.7 11.8 80 124-205 3-83 (84)
100 cd01889 SelB_euk SelB subfamil 99.1 4.5E-10 9.7E-15 103.4 10.6 100 3-115 87-189 (192)
101 KOG0468|consensus 99.1 2.8E-09 6.1E-14 109.0 14.8 203 1-207 214-567 (971)
102 cd01891 TypA_BipA TypA (tyrosi 99.1 8.2E-10 1.8E-14 101.9 10.2 107 4-114 85-194 (194)
103 cd01885 EF2 EF2 (for archaea a 99.0 6.9E-10 1.5E-14 103.9 9.4 110 2-114 91-222 (222)
104 COG1160 Predicted GTPases [Gen 99.0 1.1E-09 2.4E-14 109.3 9.9 92 3-109 256-348 (444)
105 COG1159 Era GTPase [General fu 99.0 4E-10 8.7E-15 106.5 5.5 110 3-131 81-197 (298)
106 PF03144 GTP_EFTU_D2: Elongati 99.0 4.7E-09 1E-13 80.6 10.3 70 136-205 1-74 (74)
107 cd04171 SelB SelB subfamily. 99.0 5.4E-09 1.2E-13 93.1 10.9 94 3-109 70-163 (164)
108 cd01342 Translation_Factor_II_ 98.9 1.2E-08 2.7E-13 79.3 11.4 82 122-205 1-82 (83)
109 cd00881 GTP_translation_factor 98.9 1.4E-08 3.1E-13 92.6 10.8 99 4-114 82-189 (189)
110 cd01886 EF-G Elongation factor 98.9 1.2E-08 2.5E-13 98.7 10.2 49 2-51 82-130 (270)
111 cd04168 TetM_like Tet(M)-like 98.9 8E-09 1.7E-13 98.1 8.7 101 3-114 83-237 (237)
112 KOG0464|consensus 98.8 1.1E-09 2.3E-14 106.3 2.3 187 6-209 124-420 (753)
113 cd03690 Tet_II Tet_II: This su 98.8 2.4E-08 5.2E-13 78.6 9.4 80 119-205 1-84 (85)
114 COG1160 Predicted GTPases [Gen 98.8 9E-09 1.9E-13 102.8 8.5 87 3-112 79-165 (444)
115 cd04092 mtEFG2_II_like mtEFG2_ 98.8 3.4E-08 7.3E-13 77.6 9.8 78 123-206 2-83 (83)
116 KOG0467|consensus 98.8 1.4E-07 2.9E-12 98.6 16.2 86 3-89 91-204 (887)
117 cd01890 LepA LepA subfamily. 98.8 3E-08 6.5E-13 89.9 9.5 93 4-114 87-179 (179)
118 cd03691 BipA_TypA_II BipA_TypA 98.8 9.3E-08 2E-12 75.6 10.7 80 122-205 1-85 (86)
119 cd04088 EFG_mtEFG_II EFG_mtEFG 98.8 7.3E-08 1.6E-12 75.7 10.0 78 123-206 2-83 (83)
120 TIGR03594 GTPase_EngA ribosome 98.7 3.5E-08 7.5E-13 102.7 9.9 91 4-109 251-341 (429)
121 TIGR00436 era GTP-binding prot 98.7 1.8E-08 3.9E-13 97.9 7.1 108 4-131 76-189 (270)
122 cd03699 lepA_II lepA_II: This 98.7 1.7E-07 3.6E-12 74.1 10.9 82 122-206 1-86 (86)
123 PRK00093 GTP-binding protein D 98.7 4.5E-08 9.8E-13 102.0 9.4 90 3-108 251-340 (435)
124 PRK15494 era GTPase Era; Provi 98.7 1.7E-08 3.6E-13 101.1 5.7 108 4-131 128-241 (339)
125 cd04167 Snu114p Snu114p subfam 98.7 7E-08 1.5E-12 90.4 9.4 104 3-114 90-213 (213)
126 cd03689 RF3_II RF3_II: this su 98.7 1.8E-07 3.8E-12 73.6 9.8 76 125-206 2-84 (85)
127 PF14578 GTP_EFTU_D4: Elongati 98.7 5.6E-07 1.2E-11 68.7 12.1 77 120-204 3-79 (81)
128 cd01882 BMS1 Bms1. Bms1 is an 98.7 2.3E-07 5E-12 87.5 12.1 122 2-130 98-219 (225)
129 cd04091 mtEFG1_II_like mtEFG1_ 98.6 2.8E-07 6.1E-12 71.9 9.8 75 123-205 2-80 (81)
130 cd01887 IF2_eIF5B IF2/eIF5B (i 98.6 3E-07 6.5E-12 82.2 10.0 94 4-110 70-164 (168)
131 PRK00089 era GTPase Era; Revie 98.6 1.5E-07 3.2E-12 92.7 7.6 110 4-131 81-196 (292)
132 cd04169 RF3 RF3 subfamily. Pe 98.5 2.2E-07 4.7E-12 89.8 8.2 49 3-52 90-138 (267)
133 cd04170 EF-G_bact Elongation f 98.5 5.8E-07 1.2E-11 87.3 10.2 48 3-51 83-130 (268)
134 PRK03003 GTP-binding protein D 98.5 6.7E-07 1.5E-11 93.9 10.5 89 5-109 291-379 (472)
135 cd01895 EngA2 EngA2 subfamily. 98.5 8.7E-07 1.9E-11 79.4 9.4 91 4-109 81-172 (174)
136 TIGR03598 GTPase_YsxC ribosome 98.4 9.7E-07 2.1E-11 80.2 9.4 78 6-88 99-176 (179)
137 PRK15467 ethanolamine utilizat 98.4 6.4E-07 1.4E-11 79.6 8.0 89 2-112 59-147 (158)
138 cd03700 eEF2_snRNP_like_II EF2 98.4 2.3E-06 4.9E-11 68.7 10.4 79 123-205 2-92 (93)
139 cd01859 MJ1464 MJ1464. This f 98.4 1.2E-06 2.6E-11 77.7 9.3 86 6-112 11-96 (156)
140 cd01858 NGP_1 NGP-1. Autoanti 98.4 9.3E-07 2E-11 78.5 8.6 89 2-110 3-93 (157)
141 cd04090 eEF2_II_snRNP Loc2 eEF 98.4 3.9E-06 8.4E-11 67.5 10.8 70 123-194 2-83 (94)
142 PRK09866 hypothetical protein; 98.4 1.4E-06 3.1E-11 91.0 10.0 96 2-110 253-351 (741)
143 PRK09518 bifunctional cytidyla 98.4 1.8E-06 3.8E-11 95.2 10.5 92 4-111 529-620 (712)
144 cd01894 EngA1 EngA1 subfamily. 98.3 3E-06 6.5E-11 74.6 9.5 84 4-110 73-156 (157)
145 TIGR03594 GTPase_EngA ribosome 98.3 2.8E-06 6.1E-11 88.4 10.5 87 4-113 75-161 (429)
146 PF00467 KOW: KOW motif; Inte 98.3 1.5E-06 3.3E-11 54.4 4.9 31 451-481 1-31 (32)
147 TIGR02528 EutP ethanolamine ut 98.2 2E-06 4.3E-11 74.7 6.4 83 4-108 59-141 (142)
148 PF02421 FeoB_N: Ferrous iron 98.2 6.8E-07 1.5E-11 78.4 3.1 80 6-107 77-156 (156)
149 PRK12298 obgE GTPase CgtA; Rev 98.2 1.6E-06 3.4E-11 88.2 5.9 110 4-131 234-358 (390)
150 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 5.9E-06 1.3E-10 71.9 8.3 76 3-89 7-84 (141)
151 COG0218 Predicted GTPase [Gene 98.2 1.6E-05 3.5E-10 71.5 10.6 90 7-111 106-196 (200)
152 PRK04213 GTP-binding protein; 98.2 1.4E-05 2.9E-10 74.0 10.5 92 4-113 87-193 (201)
153 cd01849 YlqF_related_GTPase Yl 98.1 1.4E-05 3.1E-10 70.7 9.7 82 9-110 1-83 (155)
154 PRK00454 engB GTP-binding prot 98.1 1.9E-05 4.2E-10 72.6 10.9 90 5-111 104-193 (196)
155 PF03439 Spt5-NGN: Early trans 98.1 3.5E-06 7.5E-11 65.9 3.5 78 330-432 2-83 (84)
156 PRK03003 GTP-binding protein D 98.0 1.3E-05 2.9E-10 84.1 8.6 87 4-113 114-200 (472)
157 cd01876 YihA_EngB The YihA (En 98.0 5.5E-05 1.2E-09 67.1 10.9 91 5-110 79-169 (170)
158 cd04160 Arfrp1 Arfrp1 subfamil 98.0 1E-05 2.2E-10 72.2 6.1 91 5-109 71-166 (167)
159 PRK09518 bifunctional cytidyla 98.0 1.8E-05 4E-10 87.2 9.1 87 4-113 351-437 (712)
160 PRK00093 GTP-binding protein D 98.0 3.3E-05 7.2E-10 80.5 10.7 85 4-111 77-161 (435)
161 cd01856 YlqF YlqF. Proteins o 98.0 1.9E-05 4.2E-10 71.1 7.7 87 3-112 15-101 (171)
162 cd00880 Era_like Era (E. coli 98.0 4.3E-05 9.4E-10 66.8 9.8 91 4-110 72-162 (163)
163 PRK12289 GTPase RsgA; Reviewed 98.0 3.7E-05 8E-10 76.9 10.3 84 4-108 86-171 (352)
164 cd01879 FeoB Ferrous iron tran 98.0 2.9E-05 6.3E-10 68.4 8.4 83 6-110 73-155 (158)
165 cd01855 YqeH YqeH. YqeH is an 98.0 3.1E-05 6.7E-10 71.0 8.8 94 4-112 31-125 (190)
166 cd04163 Era Era subfamily. Er 98.0 3.9E-05 8.4E-10 67.9 9.2 88 5-110 80-167 (168)
167 PRK00098 GTPase RsgA; Reviewed 98.0 4.2E-05 9.2E-10 75.3 9.9 83 5-107 78-162 (298)
168 cd04154 Arl2 Arl2 subfamily. 98.0 2.5E-05 5.3E-10 70.4 7.7 89 5-109 79-172 (173)
169 cd04151 Arl1 Arl1 subfamily. 97.9 2.7E-05 5.9E-10 68.9 7.7 89 5-109 64-157 (158)
170 cd01898 Obg Obg subfamily. Th 97.9 4.4E-05 9.6E-10 68.3 8.8 87 5-110 76-169 (170)
171 PRK01889 GTPase RsgA; Reviewed 97.9 5.9E-05 1.3E-09 76.0 10.0 82 5-107 110-192 (356)
172 PRK13768 GTPase; Provisional 97.9 4.4E-05 9.6E-10 73.2 8.5 91 8-113 129-248 (253)
173 TIGR00157 ribosome small subun 97.9 9.8E-05 2.1E-09 70.5 10.1 84 5-108 34-119 (245)
174 cd01897 NOG NOG1 is a nucleola 97.8 8.4E-05 1.8E-09 66.3 9.0 83 7-110 79-166 (168)
175 TIGR03596 GTPase_YlqF ribosome 97.8 5E-05 1.1E-09 74.0 8.0 87 3-112 17-103 (276)
176 cd04157 Arl6 Arl6 subfamily. 97.8 7.2E-05 1.6E-09 66.2 7.9 89 5-109 66-161 (162)
177 PF10662 PduV-EutP: Ethanolami 97.8 4.6E-05 1E-09 65.4 6.1 85 2-108 58-142 (143)
178 cd01854 YjeQ_engC YjeQ/EngC. 97.8 0.00011 2.4E-09 71.9 9.3 82 5-107 76-159 (287)
179 smart00739 KOW KOW (Kyprides, 97.8 4.4E-05 9.6E-10 46.2 3.9 26 449-474 2-27 (28)
180 PRK09563 rbgA GTPase YlqF; Rev 97.7 0.00011 2.3E-09 72.0 8.8 87 3-112 20-106 (287)
181 TIGR02729 Obg_CgtA Obg family 97.7 0.00013 2.9E-09 72.6 8.9 86 6-111 234-328 (329)
182 cd04149 Arf6 Arf6 subfamily. 97.7 0.00012 2.5E-09 65.7 7.8 89 5-109 74-167 (168)
183 cd04124 RabL2 RabL2 subfamily. 97.7 0.0002 4.4E-09 63.6 9.3 84 5-110 70-156 (161)
184 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.7 0.00013 2.9E-09 65.8 8.1 89 5-109 80-173 (174)
185 PF09173 eIF2_C: Initiation fa 97.7 0.00049 1.1E-08 53.6 9.9 77 215-300 3-88 (88)
186 cd00878 Arf_Arl Arf (ADP-ribos 97.7 9.1E-05 2E-09 65.4 6.8 89 5-109 64-157 (158)
187 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.7 0.0001 2.2E-09 67.2 7.0 91 5-111 73-169 (183)
188 PRK12288 GTPase RsgA; Reviewed 97.7 0.00031 6.7E-09 70.4 11.0 87 5-109 118-205 (347)
189 cd01878 HflX HflX subfamily. 97.7 9.4E-05 2E-09 68.6 6.6 82 5-110 118-203 (204)
190 cd01864 Rab19 Rab19 subfamily. 97.7 0.00018 3.9E-09 64.1 8.2 88 5-110 73-164 (165)
191 PRK12299 obgE GTPase CgtA; Rev 97.7 0.00019 4.1E-09 71.6 9.0 89 5-112 234-328 (335)
192 cd01881 Obg_like The Obg-like 97.6 0.00013 2.7E-09 65.6 7.0 87 4-109 71-174 (176)
193 COG2229 Predicted GTPase [Gene 97.6 0.00055 1.2E-08 60.5 10.4 87 5-110 89-176 (187)
194 cd04150 Arf1_5_like Arf1-Arf5- 97.6 0.00025 5.5E-09 62.9 8.4 89 5-109 65-158 (159)
195 cd01893 Miro1 Miro1 subfamily. 97.6 0.0003 6.6E-09 62.8 8.8 91 5-110 68-162 (166)
196 COG1162 Predicted GTPases [Gen 97.6 0.00051 1.1E-08 66.2 10.6 85 5-108 77-163 (301)
197 cd04156 ARLTS1 ARLTS1 subfamil 97.6 0.00028 6E-09 62.4 8.4 89 5-109 65-159 (160)
198 cd04142 RRP22 RRP22 subfamily. 97.6 0.00036 7.8E-09 64.4 9.3 86 5-111 78-173 (198)
199 TIGR03156 GTP_HflX GTP-binding 97.6 0.00021 4.4E-09 71.9 8.2 81 5-110 266-350 (351)
200 cd04164 trmE TrmE (MnmE, ThdF, 97.6 0.00021 4.6E-09 62.6 7.4 78 4-110 77-155 (157)
201 smart00177 ARF ARF-like small 97.6 0.00032 7E-09 63.3 8.6 90 5-110 78-172 (175)
202 TIGR00231 small_GTP small GTP- 97.6 0.00011 2.3E-09 64.2 5.2 83 5-108 78-160 (161)
203 cd01860 Rab5_related Rab5-rela 97.6 0.00027 5.8E-09 62.7 7.8 88 5-111 71-162 (163)
204 PRK12296 obgE GTPase CgtA; Rev 97.5 0.00032 6.9E-09 73.0 9.1 88 5-112 234-340 (500)
205 smart00178 SAR Sar1p-like memb 97.5 0.00032 7E-09 63.9 8.2 89 5-109 82-182 (184)
206 cd04114 Rab30 Rab30 subfamily. 97.5 0.0002 4.3E-09 63.9 6.7 86 5-109 77-166 (169)
207 cd04145 M_R_Ras_like M-Ras/R-R 97.5 0.00033 7.2E-09 62.1 8.0 87 5-110 71-162 (164)
208 COG0486 ThdF Predicted GTPase 97.5 0.00014 3.1E-09 73.4 5.9 85 4-113 293-377 (454)
209 cd04159 Arl10_like Arl10-like 97.5 0.00035 7.6E-09 61.1 7.8 89 5-109 65-158 (159)
210 PRK12297 obgE GTPase CgtA; Rev 97.5 0.00029 6.4E-09 72.2 8.0 85 5-112 234-327 (424)
211 cd04158 ARD1 ARD1 subfamily. 97.5 0.00027 5.9E-09 63.3 6.9 92 5-112 64-161 (169)
212 cd04147 Ras_dva Ras-dva subfam 97.5 0.00027 5.9E-09 65.2 7.0 91 5-112 68-163 (198)
213 cd01892 Miro2 Miro2 subfamily. 97.5 0.00036 7.8E-09 62.6 7.4 85 6-111 76-165 (169)
214 cd04138 H_N_K_Ras_like H-Ras/N 97.5 0.0003 6.4E-09 62.1 6.8 85 5-109 70-159 (162)
215 cd00879 Sar1 Sar1 subfamily. 97.5 0.00029 6.2E-09 64.4 6.9 90 5-110 84-189 (190)
216 cd01863 Rab18 Rab18 subfamily. 97.5 0.00031 6.7E-09 62.1 6.8 85 5-109 70-159 (161)
217 smart00174 RHO Rho (Ras homolo 97.4 0.0007 1.5E-08 60.7 9.1 88 5-110 67-170 (174)
218 cd04136 Rap_like Rap-like subf 97.4 0.00055 1.2E-08 60.5 8.3 87 5-110 70-161 (163)
219 PLN00223 ADP-ribosylation fact 97.4 0.00058 1.3E-08 62.0 8.6 91 5-111 82-177 (181)
220 cd04106 Rab23_lke Rab23-like s 97.4 0.00047 1E-08 61.0 7.7 86 5-109 72-160 (162)
221 PRK09435 membrane ATPase/prote 97.4 0.00033 7.2E-09 69.4 7.3 92 5-112 167-260 (332)
222 PRK09554 feoB ferrous iron tra 97.4 0.00037 8.1E-09 76.9 8.4 83 7-111 85-167 (772)
223 PRK05291 trmE tRNA modificatio 97.4 0.00023 4.9E-09 74.2 6.4 79 5-112 292-370 (449)
224 cd01862 Rab7 Rab7 subfamily. 97.4 0.0008 1.7E-08 60.1 9.1 88 5-110 70-165 (172)
225 TIGR03597 GTPase_YqeH ribosome 97.4 0.00068 1.5E-08 68.6 9.4 89 6-109 62-150 (360)
226 KOG1999|consensus 97.4 0.0011 2.3E-08 71.8 10.7 129 324-482 161-292 (1024)
227 PRK13796 GTPase YqeH; Provisio 97.4 0.00071 1.5E-08 68.5 9.0 93 3-110 64-157 (365)
228 TIGR00437 feoB ferrous iron tr 97.4 0.00036 7.8E-09 75.1 7.2 83 6-110 71-153 (591)
229 cd03703 aeIF5B_II aeIF5B_II: T 97.4 0.002 4.3E-08 52.5 9.7 79 124-204 3-92 (110)
230 cd01865 Rab3 Rab3 subfamily. 97.4 0.0006 1.3E-08 60.7 7.5 88 5-111 71-162 (165)
231 cd04128 Spg1 Spg1p. Spg1p (se 97.4 0.00094 2E-08 60.7 8.8 90 5-111 70-165 (182)
232 cd04155 Arl3 Arl3 subfamily. 97.4 0.00046 9.9E-09 61.9 6.7 89 5-109 79-172 (173)
233 PTZ00099 rab6; Provisional 97.3 0.00066 1.4E-08 61.4 7.6 90 5-113 50-143 (176)
234 cd04135 Tc10 TC10 subfamily. 97.3 0.0015 3.2E-08 58.6 9.8 90 5-109 69-171 (174)
235 cd00157 Rho Rho (Ras homology) 97.3 0.00087 1.9E-08 59.8 8.2 90 5-109 69-170 (171)
236 cd04112 Rab26 Rab26 subfamily. 97.3 0.00069 1.5E-08 62.1 7.7 89 5-112 71-163 (191)
237 cd01867 Rab8_Rab10_Rab13_like 97.3 0.00072 1.6E-08 60.4 7.6 87 5-110 73-163 (167)
238 cd04140 ARHI_like ARHI subfami 97.3 0.00092 2E-08 59.5 8.1 86 5-109 70-162 (165)
239 cd04176 Rap2 Rap2 subgroup. T 97.3 0.00099 2.1E-08 59.0 8.2 86 6-110 71-161 (163)
240 cd03702 IF2_mtIF2_II This fami 97.3 0.0027 5.7E-08 50.8 9.5 76 124-206 3-79 (95)
241 COG5192 BMS1 GTP-binding prote 97.3 0.0023 5E-08 65.5 11.2 84 1-86 127-210 (1077)
242 cd04118 Rab24 Rab24 subfamily. 97.3 0.0009 1.9E-08 61.3 7.8 91 5-111 71-165 (193)
243 smart00173 RAS Ras subfamily o 97.3 0.00049 1.1E-08 61.1 5.9 88 5-111 69-161 (164)
244 cd04175 Rap1 Rap1 subgroup. T 97.3 0.0005 1.1E-08 61.1 5.9 87 5-110 70-161 (164)
245 cd00154 Rab Rab family. Rab G 97.3 0.0012 2.6E-08 57.6 8.3 86 4-108 69-158 (159)
246 PTZ00133 ADP-ribosylation fact 97.3 0.00063 1.4E-08 61.8 6.6 90 5-110 82-176 (182)
247 cd04139 RalA_RalB RalA/RalB su 97.3 0.00065 1.4E-08 60.1 6.5 88 4-110 68-160 (164)
248 cd01861 Rab6 Rab6 subfamily. 97.3 0.0011 2.3E-08 58.7 7.8 87 5-110 70-160 (161)
249 cd04108 Rab36_Rab34 Rab34/Rab3 97.3 0.00096 2.1E-08 59.9 7.6 91 5-111 70-164 (170)
250 cd01874 Cdc42 Cdc42 subfamily. 97.2 0.002 4.3E-08 58.2 9.6 90 5-109 70-172 (175)
251 CHL00141 rpl24 ribosomal prote 97.2 0.00065 1.4E-08 52.6 5.4 37 446-482 6-42 (83)
252 COG2262 HflX GTPases [General 97.2 0.00062 1.3E-08 67.7 6.4 85 4-112 268-356 (411)
253 cd04134 Rho3 Rho3 subfamily. 97.2 0.0023 5E-08 58.5 10.0 93 5-112 69-174 (189)
254 smart00175 RAB Rab subfamily o 97.2 0.00084 1.8E-08 59.4 6.9 88 5-111 70-161 (164)
255 PRK05306 infB translation init 97.2 0.0023 4.9E-08 70.6 11.4 80 122-205 695-777 (787)
256 cd04104 p47_IIGP_like p47 (47- 97.2 0.003 6.6E-08 58.2 10.6 98 4-114 77-186 (197)
257 cd04116 Rab9 Rab9 subfamily. 97.2 0.0017 3.8E-08 57.9 8.7 86 5-109 75-168 (170)
258 PRK12281 rplX 50S ribosomal pr 97.2 0.00068 1.5E-08 51.5 4.9 35 448-482 6-40 (76)
259 cd04101 RabL4 RabL4 (Rab-like4 97.2 0.0014 2.9E-08 58.2 7.9 86 5-109 73-161 (164)
260 cd04144 Ras2 Ras2 subfamily. 97.2 0.0011 2.3E-08 60.8 7.3 88 5-111 68-162 (190)
261 cd01871 Rac1_like Rac1-like su 97.2 0.0029 6.2E-08 57.0 10.0 90 5-109 70-172 (174)
262 cd04107 Rab32_Rab38 Rab38/Rab3 97.2 0.0012 2.7E-08 60.9 7.6 89 5-111 71-167 (201)
263 cd01866 Rab2 Rab2 subfamily. 97.2 0.0013 2.8E-08 58.8 7.5 87 5-110 74-164 (168)
264 cd00877 Ran Ran (Ras-related n 97.2 0.0014 3E-08 58.6 7.6 85 6-111 71-158 (166)
265 PRK11058 GTPase HflX; Provisio 97.2 0.0015 3.2E-08 67.5 8.6 85 5-112 274-362 (426)
266 KOG1489|consensus 97.2 0.0017 3.8E-08 62.2 8.3 83 6-109 273-364 (366)
267 cd04109 Rab28 Rab28 subfamily. 97.2 0.0013 2.7E-08 61.6 7.5 89 5-111 71-165 (215)
268 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.1 0.0013 2.8E-08 58.6 7.1 87 5-110 72-162 (166)
269 cd04132 Rho4_like Rho4-like su 97.1 0.0012 2.6E-08 60.1 7.1 92 5-111 70-166 (187)
270 cd04146 RERG_RasL11_like RERG/ 97.1 0.0012 2.6E-08 58.7 6.9 87 5-109 69-161 (165)
271 TIGR00487 IF-2 translation ini 97.1 0.0021 4.5E-08 69.0 9.6 80 122-205 493-575 (587)
272 cd00882 Ras_like_GTPase Ras-li 97.1 0.0018 4E-08 55.5 7.8 86 5-108 66-156 (157)
273 cd04127 Rab27A Rab27a subfamil 97.1 0.0017 3.7E-08 58.6 7.7 83 5-109 84-174 (180)
274 PTZ00369 Ras-like protein; Pro 97.1 0.0017 3.6E-08 59.4 7.7 88 5-111 74-166 (189)
275 cd04161 Arl2l1_Arl13_like Arl2 97.1 0.0013 2.8E-08 58.8 6.8 96 5-108 64-165 (167)
276 cd04148 RGK RGK subfamily. Th 97.1 0.0014 3.1E-08 61.6 7.3 86 7-111 72-162 (221)
277 cd04130 Wrch_1 Wrch-1 subfamil 97.1 0.0012 2.7E-08 59.2 6.6 89 5-108 69-170 (173)
278 cd04113 Rab4 Rab4 subfamily. 97.1 0.0012 2.7E-08 58.3 6.5 86 5-109 70-159 (161)
279 cd04123 Rab21 Rab21 subfamily. 97.1 0.0018 3.9E-08 57.0 7.5 87 5-110 70-160 (162)
280 PF00025 Arf: ADP-ribosylation 97.1 0.0026 5.6E-08 57.4 8.6 88 6-109 80-173 (175)
281 cd04178 Nucleostemin_like Nucl 97.1 0.0013 2.9E-08 59.0 6.7 43 9-52 1-45 (172)
282 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.1 0.0017 3.7E-08 58.4 7.3 87 5-110 71-162 (172)
283 cd04110 Rab35 Rab35 subfamily. 97.0 0.0025 5.3E-08 58.8 8.3 88 5-111 76-166 (199)
284 cd04143 Rhes_like Rhes_like su 97.0 0.0028 6E-08 60.6 8.8 90 5-112 69-171 (247)
285 cd00876 Ras Ras family. The R 97.0 0.0025 5.5E-08 55.9 8.0 86 5-109 68-158 (160)
286 cd01868 Rab11_like Rab11-like. 97.0 0.0021 4.5E-08 57.1 7.5 87 5-110 73-163 (165)
287 CHL00189 infB translation init 97.0 0.0031 6.8E-08 68.9 10.0 84 119-205 647-731 (742)
288 cd01870 RhoA_like RhoA-like su 97.0 0.0055 1.2E-07 54.9 9.9 91 4-109 69-172 (175)
289 cd04177 RSR1 RSR1 subgroup. R 97.0 0.0019 4E-08 57.7 6.7 87 5-109 70-161 (168)
290 cd04122 Rab14 Rab14 subfamily. 97.0 0.0034 7.4E-08 55.8 8.2 86 5-109 72-161 (166)
291 PRK01191 rpl24p 50S ribosomal 96.9 0.0016 3.4E-08 53.6 5.2 36 447-482 44-79 (120)
292 cd04115 Rab33B_Rab33A Rab33B/R 96.9 0.0031 6.6E-08 56.5 7.6 89 5-109 73-166 (170)
293 cd04162 Arl9_Arfrp2_like Arl9/ 96.9 0.0027 5.8E-08 56.6 7.0 95 5-109 65-163 (164)
294 cd01875 RhoG RhoG subfamily. 96.9 0.011 2.3E-07 54.2 11.1 92 5-111 72-176 (191)
295 TIGR00450 mnmE_trmE_thdF tRNA 96.9 0.0027 6E-08 65.9 7.9 67 4-86 279-345 (442)
296 cd04120 Rab12 Rab12 subfamily. 96.9 0.0042 9.2E-08 57.4 8.1 87 5-109 70-160 (202)
297 cd04119 RJL RJL (RabJ-Like) su 96.8 0.0029 6.3E-08 56.0 6.7 87 5-110 70-165 (168)
298 cd03701 IF2_IF5B_II IF2_IF5B_I 96.8 0.0096 2.1E-07 47.7 8.9 75 124-205 3-78 (95)
299 KOG0092|consensus 96.8 0.005 1.1E-07 54.8 7.7 91 6-115 76-170 (200)
300 COG0532 InfB Translation initi 96.8 0.0079 1.7E-07 61.9 10.0 80 123-205 415-496 (509)
301 smart00176 RAN Ran (Ras-relate 96.8 0.0043 9.3E-08 57.3 7.4 86 5-111 65-153 (200)
302 TIGR00101 ureG urease accessor 96.8 0.0041 8.9E-08 57.3 7.2 82 8-111 113-195 (199)
303 cd04137 RheB Rheb (Ras Homolog 96.8 0.0036 7.7E-08 56.5 6.7 88 5-111 70-162 (180)
304 PLN03110 Rab GTPase; Provision 96.7 0.0051 1.1E-07 57.6 7.4 88 5-111 82-173 (216)
305 PRK00004 rplX 50S ribosomal pr 96.7 0.003 6.5E-08 51.4 5.0 35 448-482 4-38 (105)
306 cd04133 Rop_like Rop subfamily 96.7 0.012 2.6E-07 53.1 9.5 92 5-111 70-172 (176)
307 TIGR01080 rplX_A_E ribosomal p 96.7 0.0031 6.7E-08 51.8 5.0 35 448-482 41-75 (114)
308 KOG1423|consensus 96.7 0.0072 1.6E-07 57.8 8.1 98 4-113 152-272 (379)
309 cd04121 Rab40 Rab40 subfamily. 96.7 0.007 1.5E-07 55.4 8.1 87 6-111 77-166 (189)
310 cd04125 RabA_like RabA-like su 96.7 0.007 1.5E-07 55.1 8.1 88 5-111 70-161 (188)
311 TIGR00073 hypB hydrogenase acc 96.6 0.0082 1.8E-07 55.8 8.4 80 8-109 124-204 (207)
312 PLN03118 Rab family protein; P 96.6 0.0071 1.5E-07 56.3 7.7 88 5-111 83-176 (211)
313 cd04111 Rab39 Rab39 subfamily. 96.5 0.0047 1E-07 57.6 6.1 89 5-111 73-165 (211)
314 cd04103 Centaurin_gamma Centau 96.5 0.0069 1.5E-07 53.6 6.8 87 6-109 64-156 (158)
315 TIGR01079 rplX_bact ribosomal 96.5 0.0044 9.5E-08 50.3 4.9 35 448-482 3-37 (104)
316 cd01873 RhoBTB RhoBTB subfamil 96.4 0.012 2.7E-07 54.0 8.1 89 5-109 85-193 (195)
317 cd04117 Rab15 Rab15 subfamily. 96.4 0.014 3E-07 51.7 8.2 86 5-109 70-159 (161)
318 PLN03108 Rab family protein; P 96.4 0.011 2.5E-07 54.9 7.8 86 5-109 76-165 (210)
319 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 96.4 0.024 5.1E-07 51.5 9.4 90 5-109 74-177 (182)
320 cd04126 Rab20 Rab20 subfamily. 96.4 0.012 2.6E-07 55.1 7.7 95 5-110 65-188 (220)
321 cd04129 Rho2 Rho2 subfamily. 96.3 0.011 2.4E-07 53.9 7.1 91 5-111 70-172 (187)
322 cd04131 Rnd Rnd subfamily. Th 96.3 0.028 6.2E-07 50.8 9.7 91 5-109 70-173 (178)
323 PLN03071 GTP-binding nuclear p 96.3 0.012 2.7E-07 55.1 7.3 86 5-111 83-171 (219)
324 cd01896 DRG The developmentall 96.3 0.019 4.1E-07 54.4 8.5 47 40-111 179-225 (233)
325 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 96.1 0.041 9E-07 52.0 9.9 90 5-108 82-184 (232)
326 PTZ00194 60S ribosomal protein 96.1 0.01 2.3E-07 50.3 5.2 35 448-482 46-80 (143)
327 KOG0072|consensus 96.1 0.019 4.1E-07 48.6 6.6 88 6-110 84-177 (182)
328 TIGR00491 aIF-2 translation in 96.0 0.042 9.2E-07 59.0 10.5 77 128-207 473-550 (590)
329 PRK10463 hydrogenase nickel in 95.8 0.022 4.7E-07 55.3 6.7 78 10-109 208-286 (290)
330 TIGR00750 lao LAO/AO transport 95.8 0.06 1.3E-06 53.1 10.0 89 6-110 146-236 (300)
331 PRK04004 translation initiatio 95.8 0.059 1.3E-06 58.0 10.5 76 128-206 475-551 (586)
332 KOG0076|consensus 95.7 0.016 3.6E-07 50.7 4.7 90 7-112 92-187 (197)
333 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 95.7 0.12 2.5E-06 48.6 10.8 88 5-109 70-173 (222)
334 COG0536 Obg Predicted GTPase [ 95.6 0.049 1.1E-06 53.2 8.1 87 7-111 237-332 (369)
335 COG1703 ArgK Putative periplas 95.6 0.056 1.2E-06 51.9 8.2 91 6-111 163-253 (323)
336 COG0370 FeoB Fe2+ transport sy 95.6 0.021 4.6E-07 60.6 5.9 81 7-112 81-164 (653)
337 PF03308 ArgK: ArgK protein; 95.5 0.022 4.7E-07 53.8 5.3 85 5-110 140-228 (266)
338 PRK14845 translation initiatio 95.5 0.34 7.4E-06 55.3 15.3 77 128-207 931-1008(1049)
339 KOG0094|consensus 95.2 0.24 5.3E-06 44.5 10.2 92 5-114 92-187 (221)
340 cd01850 CDC_Septin CDC/Septin. 95.1 0.098 2.1E-06 50.9 8.7 70 7-84 114-184 (276)
341 KOG1191|consensus 95.1 0.022 4.8E-07 58.0 4.2 92 4-111 345-449 (531)
342 KOG0070|consensus 95.1 0.055 1.2E-06 48.1 6.1 90 6-111 83-177 (181)
343 COG0198 RplX Ribosomal protein 95.0 0.04 8.6E-07 44.3 4.5 29 448-476 4-32 (104)
344 PF03029 ATP_bind_1: Conserved 95.0 0.15 3.2E-06 48.4 9.2 87 9-109 124-234 (238)
345 PF11623 DUF3252: Protein of u 94.9 0.28 6.1E-06 33.4 7.5 50 449-500 2-53 (53)
346 COG4917 EutP Ethanolamine util 94.7 0.076 1.6E-06 44.1 5.3 85 2-109 59-143 (148)
347 COG1163 DRG Predicted GTPase [ 94.6 0.36 7.7E-06 47.0 10.5 49 37-111 240-288 (365)
348 KOG0075|consensus 94.6 0.16 3.5E-06 43.3 7.2 87 6-111 87-181 (186)
349 smart00053 DYNc Dynamin, GTPas 94.5 0.11 2.3E-06 49.3 6.7 45 7-52 162-207 (240)
350 TIGR02836 spore_IV_A stage IV 94.5 0.23 5.1E-06 50.2 9.3 87 7-112 144-237 (492)
351 cd01852 AIG1 AIG1 (avrRpt2-ind 94.3 0.096 2.1E-06 48.1 6.1 93 5-113 81-185 (196)
352 PF06858 NOG1: Nucleolar GTP-b 94.3 0.13 2.9E-06 36.5 5.2 41 7-48 13-58 (58)
353 KOG0073|consensus 94.1 0.25 5.4E-06 43.1 7.5 76 6-88 82-164 (185)
354 COG1149 MinD superfamily P-loo 93.6 0.2 4.3E-06 47.6 6.6 62 1-72 179-240 (284)
355 COG3596 Predicted GTPase [Gene 93.6 0.54 1.2E-05 44.8 9.4 93 5-113 115-223 (296)
356 PF04670 Gtr1_RagA: Gtr1/RagA 93.5 1.1 2.4E-05 42.2 11.6 78 6-86 75-161 (232)
357 cd04105 SR_beta Signal recogni 93.4 0.23 5E-06 45.9 6.8 47 5-52 69-124 (203)
358 KOG2486|consensus 93.4 0.041 9E-07 52.1 1.7 76 11-88 223-302 (320)
359 PTZ00132 GTP-binding nuclear p 93.3 0.33 7.2E-06 45.1 7.8 84 6-110 80-166 (215)
360 PF00071 Ras: Ras family; Int 93.2 0.25 5.4E-06 43.3 6.5 87 5-109 69-158 (162)
361 KOG1424|consensus 92.8 0.3 6.5E-06 50.3 6.9 69 6-86 173-244 (562)
362 cd01899 Ygr210 Ygr210 subfamil 92.4 0.44 9.6E-06 47.2 7.6 56 36-113 214-270 (318)
363 KOG2484|consensus 92.3 0.36 7.8E-06 48.2 6.5 60 5-69 144-204 (435)
364 PF01926 MMR_HSR1: 50S ribosom 91.7 0.21 4.7E-06 41.3 3.8 40 5-46 77-116 (116)
365 KOG0078|consensus 91.6 0.56 1.2E-05 42.7 6.5 72 6-89 83-161 (207)
366 KOG1532|consensus 91.0 1.9 4.1E-05 41.1 9.5 89 9-110 149-262 (366)
367 COG0378 HypB Ni2+-binding GTPa 91.0 0.27 5.8E-06 44.4 3.8 80 8-109 117-198 (202)
368 COG1084 Predicted GTPase [Gene 90.9 0.82 1.8E-05 44.7 7.2 51 7-59 247-301 (346)
369 cd03110 Fer4_NifH_child This p 90.8 0.59 1.3E-05 42.0 6.1 62 4-72 111-172 (179)
370 COG3640 CooC CO dehydrogenase 90.1 0.42 9.1E-06 44.5 4.4 46 5-50 153-198 (255)
371 KOG0071|consensus 90.1 1.5 3.2E-05 37.3 7.1 88 7-110 84-176 (180)
372 KOG0084|consensus 90.0 0.92 2E-05 40.9 6.3 75 6-88 80-158 (205)
373 KOG0088|consensus 89.2 1.7 3.8E-05 37.6 7.1 85 6-109 84-172 (218)
374 KOG0093|consensus 88.8 0.45 9.8E-06 40.6 3.3 74 6-88 92-169 (193)
375 KOG0090|consensus 87.8 2.7 5.8E-05 38.6 7.7 46 7-52 108-160 (238)
376 KOG0448|consensus 87.1 1.5 3.3E-05 46.8 6.6 79 6-86 231-310 (749)
377 COG1161 Predicted GTPases [Gen 87.0 1.4 3E-05 43.9 6.2 72 5-88 32-103 (322)
378 PF08477 Miro: Miro-like prote 87.0 0.37 8E-06 39.8 1.8 43 5-48 71-119 (119)
379 PF09439 SRPRB: Signal recogni 86.9 1.8 3.8E-05 39.1 6.1 48 5-52 73-127 (181)
380 PRK09602 translation-associate 86.8 1.6 3.5E-05 44.7 6.6 55 36-113 217-272 (396)
381 COG2139 RPL21A Ribosomal prote 86.6 2.1 4.6E-05 33.6 5.5 52 448-501 32-93 (98)
382 cd04102 RabL3 RabL3 (Rab-like3 86.6 4.6 0.0001 37.2 9.0 46 6-52 76-144 (202)
383 KOG1954|consensus 86.2 1.4 2.9E-05 43.8 5.3 49 5-54 179-228 (532)
384 KOG1999|consensus 85.9 0.78 1.7E-05 50.6 3.9 53 447-501 406-458 (1024)
385 KOG0098|consensus 85.7 2.4 5.3E-05 37.9 6.2 75 6-88 77-154 (216)
386 KOG1145|consensus 84.8 3.2 7E-05 43.4 7.5 103 100-206 558-666 (683)
387 COG5164 SPT5 Transcription elo 84.0 8.7 0.00019 39.1 9.8 47 449-499 352-398 (607)
388 PLN00023 GTP-binding protein; 82.6 2.4 5.3E-05 41.9 5.4 68 5-73 104-190 (334)
389 KOG0083|consensus 81.4 2.3 4.9E-05 35.7 4.0 77 6-91 69-149 (192)
390 KOG2423|consensus 81.1 4.3 9.4E-05 40.7 6.4 46 6-52 212-259 (572)
391 KOG0394|consensus 79.6 8.1 0.00018 34.7 7.0 77 6-88 80-164 (210)
392 KOG3905|consensus 79.1 6.1 0.00013 38.7 6.6 62 32-109 218-287 (473)
393 COG0523 Putative GTPases (G3E 79.0 3.9 8.4E-05 40.6 5.6 67 6-84 115-184 (323)
394 TIGR01007 eps_fam capsular exo 77.8 4.1 8.9E-05 37.4 5.1 46 6-51 149-194 (204)
395 KOG0095|consensus 77.5 7.6 0.00017 33.3 6.0 86 7-111 79-168 (213)
396 PF05049 IIGP: Interferon-indu 76.9 14 0.0003 37.4 8.8 98 4-114 111-220 (376)
397 KOG0395|consensus 74.8 13 0.00028 34.0 7.5 86 5-109 72-162 (196)
398 KOG1144|consensus 74.3 7.1 0.00015 42.4 6.1 56 136-192 951-1007(1064)
399 KOG0077|consensus 73.9 4.4 9.6E-05 35.6 3.8 45 7-52 87-136 (193)
400 KOG0410|consensus 73.9 4.8 0.0001 39.4 4.4 79 5-111 255-340 (410)
401 cd02036 MinD Bacterial cell di 73.8 6 0.00013 35.1 5.0 49 3-51 80-128 (179)
402 PF02492 cobW: CobW/HypB/UreG, 73.6 3.5 7.7E-05 37.0 3.4 45 7-53 113-157 (178)
403 KOG2485|consensus 73.0 15 0.00032 36.0 7.4 45 5-52 44-88 (335)
404 KOG1980|consensus 71.8 22 0.00047 38.0 8.8 66 2-69 136-202 (754)
405 KOG0081|consensus 71.2 9.4 0.0002 33.2 5.1 60 37-110 124-183 (219)
406 PRK04306 50S ribosomal protein 71.0 13 0.00029 29.6 5.6 52 448-501 34-95 (98)
407 COG1100 GTPase SAR1 and relate 70.8 28 0.00061 31.9 9.0 46 6-52 76-126 (219)
408 COG1908 FrhD Coenzyme F420-red 70.4 17 0.00038 30.0 6.2 83 26-114 43-128 (132)
409 PF13051 DUF3912: Protein of u 70.3 11 0.00023 26.4 4.2 44 450-494 4-47 (68)
410 cd02035 ArsA ArsA ATPase funct 70.0 12 0.00026 34.8 6.2 44 7-50 140-183 (217)
411 KOG4252|consensus 67.2 16 0.00034 32.6 5.7 75 6-89 91-168 (246)
412 PRK06531 yajC preprotein trans 67.1 17 0.00037 29.9 5.6 44 448-499 36-79 (113)
413 KOG0087|consensus 66.4 16 0.00035 33.5 5.9 72 6-89 85-163 (222)
414 PF05783 DLIC: Dynein light in 66.4 12 0.00026 39.3 5.8 63 33-111 193-263 (472)
415 PRK13505 formate--tetrahydrofo 66.2 30 0.00064 36.8 8.5 43 24-72 360-402 (557)
416 TIGR00739 yajC preprotein tran 65.3 23 0.00049 27.6 5.8 44 448-500 37-80 (84)
417 cd01734 YlxS_C YxlS is a Bacil 65.0 26 0.00056 27.1 6.2 50 451-502 24-77 (83)
418 smart00743 Agenet Tudor-like d 64.3 19 0.00041 25.7 5.0 53 448-501 2-55 (61)
419 KOG1490|consensus 62.6 12 0.00025 39.0 4.7 73 10-88 250-327 (620)
420 PRK04333 50S ribosomal protein 61.9 19 0.00041 28.0 4.7 33 448-481 3-35 (84)
421 PF08438 MMR_HSR1_C: GTPase of 61.6 9.2 0.0002 31.3 3.1 33 43-86 1-33 (109)
422 COG1862 YajC Preprotein transl 60.6 40 0.00087 26.9 6.5 42 448-498 43-84 (97)
423 PF09953 DUF2187: Uncharacteri 60.5 28 0.0006 24.7 4.9 39 450-494 5-43 (57)
424 PRK05886 yajC preprotein trans 60.1 39 0.00085 27.7 6.5 44 448-500 38-81 (109)
425 PF01157 Ribosomal_L21e: Ribos 59.2 50 0.0011 26.5 6.8 54 448-501 32-97 (99)
426 PF00735 Septin: Septin; Inte 58.5 19 0.00041 35.1 5.3 64 6-72 112-176 (281)
427 TIGR01969 minD_arch cell divis 58.5 18 0.0004 34.0 5.3 48 3-50 126-173 (251)
428 cd02038 FleN-like FleN is a me 58.3 22 0.00048 30.3 5.2 47 4-50 63-110 (139)
429 TIGR02475 CobW cobalamin biosy 57.5 25 0.00054 35.3 6.1 15 6-20 122-136 (341)
430 cd00066 G-alpha G protein alph 57.2 49 0.0011 32.8 8.2 44 6-50 183-241 (317)
431 PRK14664 tRNA-specific 2-thiou 56.8 73 0.0016 32.2 9.3 91 196-301 252-346 (362)
432 KOG0086|consensus 56.0 44 0.00094 29.0 6.3 74 7-89 81-158 (214)
433 cd02037 MRP-like MRP (Multiple 55.8 19 0.00042 31.8 4.6 42 7-48 91-132 (169)
434 KOG1708|consensus 55.8 19 0.0004 32.6 4.2 34 448-481 72-105 (236)
435 PF02576 DUF150: Uncharacteris 54.0 38 0.00081 29.1 5.9 50 451-502 86-139 (141)
436 COG0482 TrmU Predicted tRNA(5- 53.8 89 0.0019 31.4 9.1 111 179-302 233-354 (356)
437 PRK11537 putative GTP-binding 53.1 23 0.00051 35.1 5.1 65 7-83 122-186 (318)
438 cd03111 CpaE_like This protein 52.6 12 0.00026 30.4 2.4 33 13-51 46-78 (106)
439 PTZ00065 60S ribosomal protein 52.4 45 0.00098 28.1 5.8 40 447-487 6-46 (130)
440 KOG3883|consensus 51.4 55 0.0012 28.6 6.2 92 6-116 83-179 (198)
441 KOG0074|consensus 50.3 16 0.00035 31.2 2.9 77 6-88 84-165 (185)
442 PF02941 FeThRed_A: Ferredoxin 50.1 22 0.00047 26.1 3.1 23 451-473 1-37 (67)
443 PRK10416 signal recognition pa 49.7 53 0.0011 32.6 7.0 63 6-83 231-293 (318)
444 cd03115 SRP The signal recogni 49.6 35 0.00076 30.1 5.3 43 7-52 112-154 (173)
445 PF14331 ImcF-related_N: ImcF- 49.0 29 0.00064 33.4 4.9 50 7-57 25-90 (266)
446 smart00275 G_alpha G protein a 47.1 22 0.00049 35.6 3.9 45 6-51 206-265 (342)
447 PRK14665 mnmA tRNA-specific 2- 47.0 1.2E+02 0.0027 30.6 9.2 32 270-301 327-359 (360)
448 PF02211 NHase_beta: Nitrile h 44.9 29 0.00064 32.4 4.0 50 424-473 110-169 (222)
449 KOG1534|consensus 44.3 63 0.0014 29.9 5.8 21 31-52 159-179 (273)
450 PRK05585 yajC preprotein trans 44.3 66 0.0014 26.2 5.5 43 448-499 52-94 (106)
451 cd00550 ArsA_ATPase Oxyanion-t 43.8 60 0.0013 31.0 6.2 42 8-49 160-201 (254)
452 PTZ00189 60S ribosomal protein 42.9 63 0.0014 28.3 5.4 54 448-501 33-98 (160)
453 PF04548 AIG1: AIG1 family; I 42.8 1.3E+02 0.0027 27.8 8.0 95 6-110 82-184 (212)
454 PRK14974 cell division protein 42.8 70 0.0015 32.0 6.6 43 6-52 251-294 (336)
455 PRK14643 hypothetical protein; 42.6 57 0.0012 28.9 5.3 50 451-502 103-158 (164)
456 KOG0091|consensus 42.2 1.7E+02 0.0036 26.0 7.8 71 8-89 82-160 (213)
457 COG1326 Uncharacterized archae 41.7 51 0.0011 29.7 4.8 38 147-188 74-112 (201)
458 KOG3887|consensus 41.4 1.3E+02 0.0028 28.5 7.5 79 7-85 101-186 (347)
459 KOG0079|consensus 41.3 1E+02 0.0023 26.7 6.3 76 7-91 80-158 (198)
460 PF11717 Tudor-knot: RNA bindi 41.2 66 0.0014 22.6 4.5 51 449-499 1-53 (55)
461 PF04319 NifZ: NifZ domain; I 40.4 1.1E+02 0.0024 23.2 5.7 53 448-500 4-73 (75)
462 CHL00175 minD septum-site dete 40.3 29 0.00063 33.6 3.5 47 4-50 145-191 (281)
463 PF09465 LBR_tudor: Lamin-B re 40.3 1.3E+02 0.0029 21.2 6.3 51 446-499 3-54 (55)
464 TIGR01968 minD_bact septum sit 38.6 28 0.0006 33.0 3.0 47 4-50 130-176 (261)
465 PF11424 DUF3195: Protein of u 38.3 27 0.00059 26.6 2.2 43 331-395 2-44 (89)
466 PF02662 FlpD: Methyl-viologen 37.6 1.8E+02 0.004 24.3 7.4 77 9-88 28-107 (124)
467 PRK00143 mnmA tRNA-specific 2- 37.5 2.1E+02 0.0045 28.7 9.2 31 270-300 314-345 (346)
468 KOG2743|consensus 36.3 79 0.0017 30.9 5.4 51 8-64 178-237 (391)
469 TIGR00064 ftsY signal recognit 35.7 68 0.0015 31.0 5.2 42 7-52 190-232 (272)
470 PF01656 CbiA: CobQ/CobB/MinD/ 35.6 43 0.00092 29.9 3.6 49 4-52 113-163 (195)
471 KOG0447|consensus 35.6 78 0.0017 33.5 5.6 45 5-52 446-494 (980)
472 PRK14644 hypothetical protein; 35.3 77 0.0017 27.1 4.8 48 451-500 84-135 (136)
473 TIGR00420 trmU tRNA (5-methyla 35.0 1.9E+02 0.004 29.2 8.3 31 270-300 321-352 (352)
474 PF09547 Spore_IV_A: Stage IV 34.5 3E+02 0.0065 28.6 9.4 70 24-112 168-237 (492)
475 PF08863 YolD: YolD-like prote 33.7 1.7E+02 0.0037 22.5 6.4 66 423-500 22-90 (92)
476 PLN02759 Formate--tetrahydrofo 33.4 1.8E+02 0.0038 31.4 7.9 69 25-111 439-507 (637)
477 cd01998 tRNA_Me_trans tRNA met 33.1 2.2E+02 0.0047 28.7 8.5 32 269-300 317-349 (349)
478 PHA02518 ParA-like protein; Pr 32.7 95 0.0021 28.1 5.5 48 3-50 94-146 (211)
479 PRK00409 recombination and DNA 32.5 73 0.0016 35.9 5.4 46 448-501 636-681 (782)
480 KOG0393|consensus 32.4 1.9E+02 0.0041 26.5 7.0 79 5-88 74-165 (198)
481 PRK00090 bioD dithiobiotin syn 32.2 93 0.002 28.7 5.4 40 11-50 136-175 (222)
482 PRK02749 photosystem I reactio 32.1 1.2E+02 0.0026 22.3 4.5 36 449-484 3-40 (71)
483 smart00785 AARP2CN AARP2CN (NU 31.8 2.4E+02 0.0052 21.8 8.7 70 102-174 4-80 (83)
484 CHL00125 psaE photosystem I su 31.7 98 0.0021 22.3 3.9 35 449-483 2-38 (64)
485 KOG0097|consensus 31.6 1.5E+02 0.0032 25.3 5.7 71 7-89 83-160 (215)
486 CHL00084 rpl19 ribosomal prote 31.5 1.7E+02 0.0037 24.3 6.0 49 448-496 22-79 (117)
487 PLN00045 photosystem I reactio 31.2 1.2E+02 0.0026 23.8 4.7 41 444-484 35-80 (101)
488 cd02032 Bchl_like This family 30.8 84 0.0018 30.0 5.0 46 4-49 135-184 (267)
489 TIGR00757 RNaseEG ribonuclease 30.7 2.6E+02 0.0055 29.0 8.6 70 11-85 287-371 (414)
490 COG4050 Uncharacterized protei 30.7 2.2E+02 0.0047 23.5 6.3 62 5-71 82-148 (152)
491 TIGR01069 mutS2 MutS2 family p 30.0 87 0.0019 35.3 5.5 44 450-501 626-669 (771)
492 COG4873 Uncharacterized protei 29.9 1.1E+02 0.0023 22.4 3.9 42 449-496 24-65 (81)
493 TIGR01425 SRP54_euk signal rec 29.7 82 0.0018 32.6 4.8 44 5-52 210-254 (429)
494 PF00448 SRP54: SRP54-type pro 28.8 79 0.0017 28.9 4.1 43 7-52 113-155 (196)
495 cd00477 FTHFS Formyltetrahydro 28.7 2.2E+02 0.0048 30.1 7.7 70 23-112 343-413 (524)
496 PF09885 DUF2112: Uncharacteri 28.5 2.2E+02 0.0047 24.2 6.1 59 6-69 79-142 (143)
497 PF13500 AAA_26: AAA domain; P 28.3 66 0.0014 29.2 3.6 38 11-48 132-169 (199)
498 PRK13506 formate--tetrahydrofo 28.2 2.6E+02 0.0057 29.9 8.1 70 24-111 381-450 (578)
499 KOG3886|consensus 27.8 1.9E+02 0.004 27.4 6.2 75 6-86 80-163 (295)
500 PF05641 Agenet: Agenet domain 27.1 2.5E+02 0.0055 20.5 6.0 52 449-501 1-62 (68)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-56 Score=426.78 Aligned_cols=292 Identities=33% Similarity=0.509 Sum_probs=268.4
Q ss_pred CccccccCCEEEEEEECCCC-------CCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCC
Q psy15224 1 MITGAAQMDGAILVCSAADG-------PMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEF 72 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g-------~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~ 72 (502)
||+|+++||+|||||||..| ..+||+||+.+++.+|+.++||||||||+++| +++|++++++++.+++.+||
T Consensus 102 mItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~ 181 (428)
T COG5256 102 MITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGY 181 (428)
T ss_pred hhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999999998 88999999999999999999999999999999 88999999999999999999
Q ss_pred CCCCCeEEEccccccccC-----CCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEee
Q psy15224 73 PGNDIPIIKGSAKLALEG-----DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGI 147 (502)
Q Consensus 73 ~~~~~~ii~iSa~~g~~~-----~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~ 147 (502)
+..+++|||+||.+|.|. .++||+|+ +|+++|+. +..|.+..+.||+++|++++++.+.|++..|||++|.
T Consensus 182 ~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~Gp---TLleaLd~-~~~p~~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~ 257 (428)
T COG5256 182 NPKDVPFIPISGFKGDNLTKKSENMPWYKGP---TLLEALDQ-LEPPERPLDKPLRLPIQDVYSISGIGTVPVGRVESGV 257 (428)
T ss_pred CccCCeEEecccccCCcccccCcCCcCccCC---hHHHHHhc-cCCCCCCCCCCeEeEeeeEEEecCCceEEEEEEeeee
Confidence 988899999999999982 46999877 56777773 6677888999999999999999999999999999999
Q ss_pred eecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCC-cccEEEEEEEEeecC
Q psy15224 148 VRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIK-PHKHFTGEIYALSKD 226 (502)
Q Consensus 148 l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~-~~~~f~a~v~~l~~~ 226 (502)
|++||++++.|. +...+|+||++++++.+.|.+||.|+++++++...+|++|++++++++++ .+..|.|++.+++++
T Consensus 258 i~~g~~v~~~p~--~~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~~t~s~~f~a~i~vl~~p 335 (428)
T COG5256 258 IKPGQKVTFMPA--GVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDNPPTVSPEFTAQIIVLWHP 335 (428)
T ss_pred eccCCEEEEecC--cceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCCCcccccceEEEEEEEecC
Confidence 999999999984 47889999999999999999999999999999999999999999998764 447999999999997
Q ss_pred CCCCCcccccCCeeEEEeeeeeEEEEEE-------------ccCCCccccCCCEEEEEEEeCceEecccC------CeEE
Q psy15224 227 EGGRHTPFFSNYRPQFYFRTTDVTGSIE-------------LPKNKEMVMPGDNVLITVRLINPIAMEEG------LRFA 287 (502)
Q Consensus 227 ~~~~~~~i~~g~~~~~~~~~~~~~~~i~-------------~~~~~~~~~~~~~~~v~~~~~~pi~~~~~------~r~i 287 (502)
+.+.+||++.+|+++..++|++. ..+.+.+++.|+.+.+++++.+|+|++.. +||+
T Consensus 336 -----~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~kP~~~e~~~~~~~Lgrfa 410 (428)
T COG5256 336 -----GIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPLCLEKVSEIPQLGRFA 410 (428)
T ss_pred -----ccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEecCceEeeecccCCccceEE
Confidence 68999999999999999999883 12346789999999999999999999964 6999
Q ss_pred EEeCCeEEEEEEEeec
Q psy15224 288 IREGVQQFIQDNLLTK 303 (502)
Q Consensus 288 lr~~~~~ig~G~i~~~ 303 (502)
|||.|+|||+|.|++.
T Consensus 411 lrd~g~tIA~G~v~~v 426 (428)
T COG5256 411 LRDMGQTIAAGKVLEV 426 (428)
T ss_pred EEeCCCeEEeEEEEec
Confidence 9999999999999864
No 2
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-56 Score=405.37 Aligned_cols=300 Identities=76% Similarity=1.175 Sum_probs=288.3
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
||+||++.|.|||||+|.+|+++||+||+.+++..|+|.+++++||+|+++.++.++.+..++.++|..++|++.+.|++
T Consensus 92 MItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii 171 (394)
T COG0050 92 MITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPII 171 (394)
T ss_pred HhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCccee
Confidence 89999999999999999999999999999999999999999999999999977899999999999999999999999999
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK 160 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~ 160 (502)
..||+.-.+++..|.. .+.+|++++++++|+|.+..+.||+|+|.++|+++|+|++++|||.+|+|++||++.+.+.+
T Consensus 172 ~gSal~ale~~~~~~~--~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~ 249 (394)
T COG0050 172 RGSALKALEGDAKWEA--KIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIK 249 (394)
T ss_pred echhhhhhcCCcchHH--HHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEeccc
Confidence 9999988888888864 78999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCCCcccccCCee
Q psy15224 161 DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240 (502)
Q Consensus 161 ~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~ 240 (502)
...+..+++++++++..+++.|||.|++.|+|++..++.||++|+.+++..+.+.|+|++++|+.+++++++|+..||+|
T Consensus 250 ~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgsi~ph~kfeaevyvL~keeggrhtpff~~yrp 329 (394)
T COG0050 250 ETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKPHTKFEAEVYVLSKEEGGRHTPFFHGYRP 329 (394)
T ss_pred ccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEeecCCcccccceeeEEEEEEecccCCCCCCcccCccc
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEeCCeEEEEEEEee
Q psy15224 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLT 302 (502)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~~~~ig~G~i~~ 302 (502)
.+|+++.++++.+.+..+...+.+||.+.+.+++.+|++++.|.||.+|++|+|+|.|.|.+
T Consensus 330 qfyfRttDVtg~i~l~eg~emvmpgdnv~~~veLi~pia~e~G~rFaIreGgrtvgaGvV~~ 391 (394)
T COG0050 330 QFYFRTTDVTGAITLPEGVEMVMPGDNVKMVVELIHPIAMEEGLRFAIREGGRTVGAGVVTK 391 (394)
T ss_pred eeEEEeeeeeeeEeccCCcceecCCCceEEEEEEeeeeecCCCCEEEEEeCCeeeeeeEEee
Confidence 99999999999999888889999999999999999999999999999999999999999874
No 3
>KOG0460|consensus
Probab=100.00 E-value=6.6e-56 Score=412.98 Aligned_cols=312 Identities=61% Similarity=1.002 Sum_probs=293.4
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
||+|+++.|.|||||+|++|.++||+|||.++++.|+++++|.+||.|+++.++.++.+.-+++++|..+||++++.|+|
T Consensus 134 MItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI 213 (449)
T KOG0460|consen 134 MITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVI 213 (449)
T ss_pred hhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCee
Confidence 89999999999999999999999999999999999999999999999999767888989999999999999999999999
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK 160 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~ 160 (502)
..||+.-.++.++-...+.+..|++++++++|.|.+..+.||.|+|.++|.++|+|+|++|++++|+|++||++.+.+.+
T Consensus 214 ~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~ 293 (449)
T KOG0460|consen 214 RGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHN 293 (449)
T ss_pred ecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEeccC
Confidence 99999777665554444678999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCCCcccccCCee
Q psy15224 161 DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240 (502)
Q Consensus 161 ~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~ 240 (502)
...+..|..|++++..+++|.|||.+++.|+|++..+++||++++.+++..+.+.|+|++++|+.+++++++|+..+|++
T Consensus 294 ~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGsvk~~~k~ea~~YiLsk~EGGR~~pf~s~y~~ 373 (449)
T KOG0460|consen 294 KTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGSVKPHNKFEAQLYILSKEEGGRHKPFVSGYRP 373 (449)
T ss_pred cceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEEecCCcccccceeeEEEEEEEhhhCCCccchhhccch
Confidence 77789999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred EEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEeCCeEEEEEEEeeceeeccCccc
Q psy15224 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLTKEIVNSNKIN 312 (502)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~~~~ig~G~i~~~~~~~~~~~~ 312 (502)
.+|+.+.++++++..+.....+.||+.+.+++.+.+|+++++|+||.||++|+|+|.|.|++.++...+..+
T Consensus 374 q~fs~TwD~~~~v~~~~~~~mvMPGe~~~~~~~Li~pm~le~GqrFtiReGg~TvgtGvvt~~l~lt~~~~~ 445 (449)
T KOG0460|consen 374 QMFSRTWDVTGRVDIPPEKEMVMPGENVKVEVTLIRPMPLEKGQRFTLREGGRTVGTGVVTDTLPLTEEEKN 445 (449)
T ss_pred hheeeecccceEEEccChHhcccCCCCeEEEEEEecccccCCCceeeEccCCeeeeeeeEeeeeeccchhcc
Confidence 999999999999998877788999999999999999999999999999999999999999988776554444
No 4
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=9.1e-52 Score=420.59 Aligned_cols=301 Identities=73% Similarity=1.173 Sum_probs=276.1
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
|+.|++.+|+++||||+.+|+.+||++|+.++..+|+|++|+++||||+++.++.++.+.+++.++++.+++..+.+|++
T Consensus 92 ~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 171 (394)
T PRK12736 92 MITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVI 171 (394)
T ss_pred HHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEE
Confidence 56789999999999999999999999999999999999888789999998765677777789999999988876678999
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK 160 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~ 160 (502)
|+||++|.++.++||. ++.+|++.+.+.+|+|.+..+.||+|+|+++|.++|.|++++|+|.+|+|++||+|+++|.+
T Consensus 172 ~vSa~~g~~~~~~~~~--~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~ 249 (394)
T PRK12736 172 RGSALKALEGDPKWED--AIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIK 249 (394)
T ss_pred EeeccccccCCCcchh--hHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEecCC
Confidence 9999999888889994 78899999999898888888899999999999999999999999999999999999999864
Q ss_pred CCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCCCcccccCCee
Q psy15224 161 DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240 (502)
Q Consensus 161 ~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~ 240 (502)
.+..++|++|++++.++++|.|||+|+++|++++..++++|++|++++.+.++..|+|++.++++++++..+++..||++
T Consensus 250 ~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~ 329 (394)
T PRK12736 250 ETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPGSIKPHTKFKAEVYILTKEEGGRHTPFFNNYRP 329 (394)
T ss_pred CCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEecCCCCCcceEEEEEEEEEecccCCCCCcccCCceE
Confidence 45779999999999999999999999999999988999999999998777778999999999998654445789999999
Q ss_pred EEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEeCCeEEEEEEEeec
Q psy15224 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLTK 303 (502)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~~~~ig~G~i~~~ 303 (502)
.+|+++.++.|++...+++.++++|+.+.|+|+|.+|+|+++++||+||++++|+|+|.|++.
T Consensus 330 ~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~~g~tv~~G~V~~v 392 (394)
T PRK12736 330 QFYFRTTDVTGSIELPEGTEMVMPGDNVTITVELIHPIAMEQGLKFAIREGGRTVGAGTVTEI 392 (394)
T ss_pred EEEEccCeEEEEEEecCCcceeCCCCEEEEEEEECceEEEeeCCEEEEecCCcEEEEEEEEEe
Confidence 999999999999987777888999999999999999999999999999999999999999854
No 5
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=3.3e-51 Score=417.26 Aligned_cols=301 Identities=74% Similarity=1.161 Sum_probs=275.1
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
|+.|++.+|+++|||||.+|+.+||++|+.++..+++|++|+|+||||++++++.++.+.+++.++++.+++...++|++
T Consensus 92 ~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii 171 (394)
T TIGR00485 92 MITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPII 171 (394)
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEE
Confidence 56789999999999999999999999999999999999988779999999865667777788999999988876668999
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK 160 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~ 160 (502)
++||++|.++.++||. ++.+|+++|.+.+|.|.+..+.||+|+|+++|.++|.|++++|+|.+|+|++||+|.+.|.+
T Consensus 172 ~vSa~~g~~g~~~~~~--~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~ 249 (394)
T TIGR00485 172 RGSALKALEGDAEWEA--KILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLK 249 (394)
T ss_pred ECccccccccCCchhH--hHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCC
Confidence 9999999888889995 57889999998888777788899999999999999999999999999999999999999854
Q ss_pred CCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCCCcccccCCee
Q psy15224 161 DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240 (502)
Q Consensus 161 ~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~ 240 (502)
.+..++|++|+.++.++++|.|||+|+++|++++..++++|++|++++.+.++..|+|++.+|++++++.++++..||++
T Consensus 250 ~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~~~~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~ 329 (394)
T TIGR00485 250 DTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPGSIKPHTKFEAEVYVLKKEEGGRHTPFFSGYRP 329 (394)
T ss_pred CCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEecCCCCCcceEEEEEEEEEecCCCCCCCccccCceE
Confidence 45678999999999999999999999999999888899999999998776778999999999998655556789999999
Q ss_pred EEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEeCCeEEEEEEEeec
Q psy15224 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLTK 303 (502)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~~~~ig~G~i~~~ 303 (502)
.+|+++.++.|++...+++.++++|+.+.|+|+|.+|+|+++++||+||++++|+|+|.|++.
T Consensus 330 ~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~~~~~~p~~~~~~~rfilR~~g~tv~~G~V~~v 392 (394)
T TIGR00485 330 QFYFRTTDVTGSITLPEGVEMVMPGDNVKMTVELISPIALEQGMRFAIREGGRTVGAGVVSKI 392 (394)
T ss_pred EEEEecceEEEEEEecCCcceeCCCCEEEEEEEECceEEEeECCEEEEecCCcEEEEEEEEEe
Confidence 999999999999987788888999999999999999999999999999999999999999854
No 6
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=2.4e-51 Score=422.18 Aligned_cols=301 Identities=64% Similarity=1.038 Sum_probs=272.8
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
|+.|++.+|+++|||||.+|+.+||++|+.++..+|+|++|+++||||+++.++.++.+.+++..+|+.++|+..++|++
T Consensus 161 ~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~v 240 (478)
T PLN03126 161 MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPII 240 (478)
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEE
Confidence 57889999999999999999999999999999999999888889999999876778888889999999999876689999
Q ss_pred EccccccccC----------CCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeec
Q psy15224 81 KGSAKLALEG----------DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 150 (502)
Q Consensus 81 ~iSa~~g~~~----------~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~ 150 (502)
|+||++|.|. ..+||. ++.+|++.|.+..|.|.+..+.||+|+|+++|+++|+|+|++|+|.+|+|++
T Consensus 241 p~Sa~~g~n~~~~~~~~~~g~~~wy~--~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~ 318 (478)
T PLN03126 241 SGSALLALEALMENPNIKRGDNKWVD--KIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKV 318 (478)
T ss_pred EEEccccccccccccccccCCCchhh--hHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcCeEec
Confidence 9999998642 347985 5788999999877767777889999999999999999999999999999999
Q ss_pred CCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCC
Q psy15224 151 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGR 230 (502)
Q Consensus 151 gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~ 230 (502)
||+|.++|...+..++|++|+.++.++++|.|||+|+++|++++..++++|++|++++.+.++..|+|++.|+++++++.
T Consensus 319 Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~~~~~~~~F~A~i~vL~~~~gg~ 398 (478)
T PLN03126 319 GETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPHTKFEAIVYVLKKEEGGR 398 (478)
T ss_pred CCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecCCCCCceEEEEEEEEEecccccCC
Confidence 99999998654567999999999999999999999999999999999999999999877777899999999999864444
Q ss_pred CcccccCCeeEEEeeeeeEEEEEEccC-----CCccccCCCEEEEEEEeCceEecccCCeEEEEeCCeEEEEEEEeec
Q psy15224 231 HTPFFSNYRPQFYFRTTDVTGSIELPK-----NKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLTK 303 (502)
Q Consensus 231 ~~~i~~g~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~~~~ig~G~i~~~ 303 (502)
+++|.+||++.+|+++.+++|++..+. .+.++++|+.+.|+|+|.+|+|+++++||+||++++|+|+|.|++.
T Consensus 399 ~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~~~~~~l~~gd~a~v~l~~~~Pi~~~~~~RfilR~~~~Tva~G~V~~v 476 (478)
T PLN03126 399 HSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSI 476 (478)
T ss_pred cccccCCcEEEEEEEecEEEEEEEEEecccCCCccEeCCCCEEEEEEEECCeEEEccCCEEEEecCCceEEEEEEEEe
Confidence 578999999999999999999998553 4567999999999999999999999999999999999999999753
No 7
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=3.2e-51 Score=419.53 Aligned_cols=303 Identities=67% Similarity=1.094 Sum_probs=272.7
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
|++|++.+|+++|||||.+|+++||++|+.++..+|+|++|+++||||++++++.++.+.+++.++++.++++.+.+|++
T Consensus 141 ~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpii 220 (447)
T PLN03127 141 MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPII 220 (447)
T ss_pred HHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEE
Confidence 57889999999999999999999999999999999999877779999999765667777778889998888876679999
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK 160 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~ 160 (502)
|+||+++.++.+.++...++.+|+++|.+.+|.|.+..+.||+|+|+++|.++|.|++++|+|.+|+|++||+|+++|.+
T Consensus 221 p~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~ 300 (447)
T PLN03127 221 RGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLR 300 (447)
T ss_pred EeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccC
Confidence 99998766555543333468899999999888888888899999999999999999999999999999999999999753
Q ss_pred C--CeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCCCcccccCC
Q psy15224 161 D--TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNY 238 (502)
Q Consensus 161 ~--~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~ 238 (502)
. +..++|++|+.++.++++|.|||+|+++|++++..++++|++|++++.+.++..|+|++.+|+++++++++++..||
T Consensus 301 ~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~~~~~~~~F~A~i~vl~~~~gg~~~~i~~g~ 380 (447)
T PLN03127 301 PGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVICKPGSIKTYKKFEAEIYVLTKDEGGRHTPFFSNY 380 (447)
T ss_pred CCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCCCCceeEEEEEEEEEEcccccccCcccccCc
Confidence 3 46899999999999999999999999999999999999999999987677789999999999987655567899999
Q ss_pred eeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEeCCeEEEEEEEeec
Q psy15224 239 RPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLTK 303 (502)
Q Consensus 239 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~~~~ig~G~i~~~ 303 (502)
++.+|+++.+++|++...+++.++.+|+.+.|+|+|.+|+|+++++||+||++|+|+|+|.|++.
T Consensus 381 ~~~~~~~t~~~~~~i~~~~~~~~l~~gd~a~v~l~~~~p~~le~g~RfilR~~g~Tvg~G~V~~v 445 (447)
T PLN03127 381 RPQFYLRTADVTGKVELPEGVKMVMPGDNVTAVFELISPVPLEPGQRFALREGGRTVGAGVVSKV 445 (447)
T ss_pred eeEEEeeecceeEEEEeccCccccCCCCEEEEEEEECceEEEeeCCEEEEEeCCcEEEEEEEEEe
Confidence 99999999999999987788889999999999999999999999999999999999999999753
No 8
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=6.7e-51 Score=414.52 Aligned_cols=301 Identities=78% Similarity=1.196 Sum_probs=273.7
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
|+.|++.+|+++|||||.+|+.+||++|+.++..+|+|++|+++||||+++.++.++.+.+++..+++.+++..+++|++
T Consensus 92 ~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii 171 (396)
T PRK12735 92 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPII 171 (396)
T ss_pred HHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEE
Confidence 56889999999999999999999999999999999999887779999998755677778888999999988866678999
Q ss_pred EccccccccCC--CCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEee
Q psy15224 81 KGSAKLALEGD--TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIG 158 (502)
Q Consensus 81 ~iSa~~g~~~~--~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p 158 (502)
|+||++|.|.. ++||. ++.+|+++|.+.+|+|.+..+.||+|+|+++|.++|.|++++|+|.+|+|++||++.++|
T Consensus 172 ~~Sa~~g~n~~~~~~w~~--~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p 249 (396)
T PRK12735 172 RGSALKALEGDDDEEWEA--KILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVG 249 (396)
T ss_pred ecchhccccCCCCCcccc--cHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEEec
Confidence 99999998753 56874 688999999998887877888999999999999999999999999999999999999998
Q ss_pred cCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCCCcccccCC
Q psy15224 159 IKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNY 238 (502)
Q Consensus 159 ~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~ 238 (502)
.+.+..++|++|++++.++++|.|||+|+++|+|++..++++|++|++++++.++..|+|++.+|++++++.+++|..||
T Consensus 250 ~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~~~~~~~~f~a~i~vl~~~~~~~~~~i~~g~ 329 (396)
T PRK12735 250 IKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGSIKPHTKFEAEVYVLSKEEGGRHTPFFNGY 329 (396)
T ss_pred CCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCCCCCcceEEEEEEEEEecccCCCCCcccCCC
Confidence 65457899999999999999999999999999999989999999999987777789999999999986444456899999
Q ss_pred eeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEeCCeEEEEEEEeec
Q psy15224 239 RPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLTK 303 (502)
Q Consensus 239 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~~~~ig~G~i~~~ 303 (502)
++.+|+++.+++|++...+++.++++|+.+.|+|+|++|+|+++++||+||++++|+|+|.|++.
T Consensus 330 ~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~~g~tv~~G~V~~v 394 (396)
T PRK12735 330 RPQFYFRTTDVTGTIELPEGVEMVMPGDNVKMTVELIAPIAMEEGLRFAIREGGRTVGAGVVAKI 394 (396)
T ss_pred eeEEEeccceEEEEEEccCCCceeCCCCEEEEEEEECceEEEeECCEEEEEcCCcEEEEEEEEEe
Confidence 99999999999999987778888999999999999999999999999999999999999999753
No 9
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=8.3e-51 Score=413.42 Aligned_cols=301 Identities=77% Similarity=1.186 Sum_probs=273.8
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
|++|++.+|+++|||||.+|+.+||++|+.++..+++|++|+++||||+++.++.++.+.+++..+++.++++..++|++
T Consensus 92 ~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv 171 (396)
T PRK00049 92 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPII 171 (396)
T ss_pred HHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEE
Confidence 56789999999999999999999999999999999999887779999998755677778889999999998866679999
Q ss_pred EccccccccC--CCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEee
Q psy15224 81 KGSAKLALEG--DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIG 158 (502)
Q Consensus 81 ~iSa~~g~~~--~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p 158 (502)
|+||++|.|. .++||. ++.+|+++|.+.+|+|.+..+.||+|+|+++|+++|.|++++|+|.+|+|++||++.++|
T Consensus 172 ~iSa~~g~~~~~~~~w~~--~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p 249 (396)
T PRK00049 172 RGSALKALEGDDDEEWEK--KILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVG 249 (396)
T ss_pred EeecccccCCCCcccccc--cHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEEee
Confidence 9999998763 468985 678999999988887888889999999999999999999999999999999999999998
Q ss_pred cCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCCCcccccCC
Q psy15224 159 IKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNY 238 (502)
Q Consensus 159 ~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~ 238 (502)
.+.+..++|+||+.++.++++|.|||+|+++|++++..++++|++|++++.+.++..|+|++.+|++++++..+++..||
T Consensus 250 ~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~vl~~~~~g~~~~i~~g~ 329 (396)
T PRK00049 250 IRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPGSITPHTKFEAEVYVLSKEEGGRHTPFFNGY 329 (396)
T ss_pred cCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCCCCCcceEEEEEEEEEecCcCCCCCcccCCC
Confidence 64467899999999999999999999999999999889999999999987767789999999999986444457899999
Q ss_pred eeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEeCCeEEEEEEEeec
Q psy15224 239 RPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLTK 303 (502)
Q Consensus 239 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~~~~ig~G~i~~~ 303 (502)
++.+|+++.+++|++.+.+++.++++|+.+.|+|+|.+|+|+++++||+||++|+|+|+|.|++.
T Consensus 330 ~~~~~~~t~~~~~~i~l~~~~~~l~~g~~a~v~i~~~~p~~~e~~~RfilR~~g~t~~~G~V~~v 394 (396)
T PRK00049 330 RPQFYFRTTDVTGVIELPEGVEMVMPGDNVEMTVELIAPIAMEEGLRFAIREGGRTVGAGVVTKI 394 (396)
T ss_pred EEEEEEecCcEEEEEEecCCCcccCCCCEEEEEEEECceEEEeeCCEEEEecCCcEEEEEEEEEe
Confidence 99999999999999987778889999999999999999999999999999999999999999753
No 10
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=2.6e-50 Score=411.86 Aligned_cols=301 Identities=65% Similarity=1.068 Sum_probs=271.4
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
|++|++.+|+++|||||.+|+++||++|+.++..+|+|++|+++||||++++++.++.+.+++..+|+.++++.+.+|++
T Consensus 92 ~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii 171 (409)
T CHL00071 92 MITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIV 171 (409)
T ss_pred HHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEE
Confidence 46788999999999999999999999999999999999888889999999876678888889999999999876679999
Q ss_pred EccccccccC----------CCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeec
Q psy15224 81 KGSAKLALEG----------DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 150 (502)
Q Consensus 81 ~iSa~~g~~~----------~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~ 150 (502)
|+||++|.|. ..+||. ++.+|+++|.+.+|+|.+..+.||+|+|+++|.++|.|++++|+|.+|+|++
T Consensus 172 ~~Sa~~g~n~~~~~~~~~~~~~~w~~--~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~ 249 (409)
T CHL00071 172 SGSALLALEALTENPKIKRGENKWVD--KIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKV 249 (409)
T ss_pred EcchhhcccccccCccccccCCchhh--hHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEEee
Confidence 9999999863 237885 5789999999888878778889999999999999999999999999999999
Q ss_pred CCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCC
Q psy15224 151 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGR 230 (502)
Q Consensus 151 gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~ 230 (502)
||+|.+.|.+++..++|++|+.+++++++|.|||+|+++|++++..++++|++|++++.+.++..|+|++.+++++.++.
T Consensus 250 Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~ 329 (409)
T CHL00071 250 GDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPGTITPHTKFEAQVYILTKEEGGR 329 (409)
T ss_pred CCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCCCCCcceEEEEEEEEEecccCCc
Confidence 99999887654567999999999999999999999999999988899999999999877777899999999999853333
Q ss_pred CcccccCCeeEEEeeeeeEEEEEEccC-----CCccccCCCEEEEEEEeCceEecccCCeEEEEeCCeEEEEEEEeec
Q psy15224 231 HTPFFSNYRPQFYFRTTDVTGSIELPK-----NKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLTK 303 (502)
Q Consensus 231 ~~~i~~g~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~~~~ig~G~i~~~ 303 (502)
.+++.+||++.+|+++.+++|++..+. .+..+++|+.+.|+|++.+|+|+++++||+||++++|+|+|.|++.
T Consensus 330 ~~~i~~g~~~~~~~gt~~~~~~i~~i~~~~~~~~~~l~~g~~a~v~l~~~~pi~~e~~~rfilR~~~~tig~G~V~~~ 407 (409)
T CHL00071 330 HTPFFPGYRPQFYVRTTDVTGKIESFTADDGSKTEMVMPGDRIKMTVELIYPIAIEKGMRFAIREGGRTVGAGVVSKI 407 (409)
T ss_pred cccccCCceEEEEEcccEEEEEEEEEcccCCCCCcEecCCCEEEEEEEECCeEEEeeCCEEEEecCCeEEEEEEEEEe
Confidence 468999999999999999999998654 3678999999999999999999999999999999999999999853
No 11
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=5.6e-50 Score=410.88 Aligned_cols=293 Identities=28% Similarity=0.400 Sum_probs=261.3
Q ss_pred CccccccCCEEEEEEECCCCCC-------cchHHHHHHHHHhCCCeEEEEEEcCCCCC--h-HHHHHHHHHHHHHHHhhc
Q psy15224 1 MITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMVD--D-EELLELVEIEIRELLNKY 70 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~-------~qt~e~l~~~~~~~i~~iiv~iNK~D~~~--~-~~~~~~i~~~i~~~l~~~ 70 (502)
|++|++.+|+|||||||.+|.+ +||++|+.++..+|+|++|+|+||||+.+ + +++|+++.+++..+++..
T Consensus 102 ~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~ 181 (447)
T PLN00043 102 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV 181 (447)
T ss_pred HHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHc
Confidence 6889999999999999999843 79999999999999999888899999873 3 578999999999999999
Q ss_pred CCCCCCCeEEEccccccccC-----CCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEE
Q psy15224 71 EFPGNDIPIIKGSAKLALEG-----DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVER 145 (502)
Q Consensus 71 ~~~~~~~~ii~iSa~~g~~~-----~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~s 145 (502)
++..++++++|+||++|.|. .++||+|+ .|+++|.+ +++|.+..+.||+|+|+++|+++|.|++++|+|.+
T Consensus 182 g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~---tLl~~l~~-i~~p~~~~~~plr~~I~~v~~~~g~G~vv~G~V~~ 257 (447)
T PLN00043 182 GYNPDKIPFVPISGFEGDNMIERSTNLDWYKGP---TLLEALDQ-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVET 257 (447)
T ss_pred CCCcccceEEEEeccccccccccccCCcccchH---HHHHHHhh-cCCCccccCCCcEEEEEEEEEeCCcEEEEEEEEEC
Confidence 99877789999999999884 35899765 57777766 55667778899999999999999999999999999
Q ss_pred eeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCC-CC-CcccEEEEEEEEe
Q psy15224 146 GIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG-SI-KPHKHFTGEIYAL 223 (502)
Q Consensus 146 G~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~-~~-~~~~~f~a~v~~l 223 (502)
|+|++||+|.++|. +..++|++|+.++.++++|.|||.|+++|++++..++++|++|+++. .| ..+..|+|++.||
T Consensus 258 G~l~~Gd~v~~~P~--~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~~~~p~~~~~~F~A~i~~l 335 (447)
T PLN00043 258 GVIKPGMVVTFGPT--GLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIM 335 (447)
T ss_pred CEEeeCCEEEEcCC--CCEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccCCCCCCccccEEEEEEEEE
Confidence 99999999999984 46899999999999999999999999999998889999999999873 44 5579999999999
Q ss_pred ecCCCCCCcccccCCeeEEEeeeeeEEEEEEcc-------------CCCccccCCCEEEEEEEeCceEeccc------CC
Q psy15224 224 SKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVRLINPIAMEE------GL 284 (502)
Q Consensus 224 ~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~~~~~~~~~v~~~~~~pi~~~~------~~ 284 (502)
+++ .++..||++.+|+++.+++|++..+ +++.++++|+.+.|+|++.+|+|+++ .+
T Consensus 336 ~~~-----~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~~pi~~e~~~~~~~lG 410 (447)
T PLN00043 336 NHP-----GQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLG 410 (447)
T ss_pred CCC-----CCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEEEECCcEEEEecccCCCCc
Confidence 976 6899999999999999999987521 24578999999999999999999998 48
Q ss_pred eEEEEeCCeEEEEEEEeece
Q psy15224 285 RFAIREGVQQFIQDNLLTKE 304 (502)
Q Consensus 285 r~ilr~~~~~ig~G~i~~~~ 304 (502)
||+|||++.|+|+|.|++..
T Consensus 411 rf~lrd~~~Tva~G~v~~v~ 430 (447)
T PLN00043 411 RFAVRDMRQTVAVGVIKSVE 430 (447)
T ss_pred eEEEEECCCeEEEEEEEEEe
Confidence 99999999999999998664
No 12
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=8.1e-50 Score=410.09 Aligned_cols=293 Identities=30% Similarity=0.446 Sum_probs=261.5
Q ss_pred CccccccCCEEEEEEECCCCCC-------cchHHHHHHHHHhCCCeEEEEEEcCC--CCCh-HHHHHHHHHHHHHHHhhc
Q psy15224 1 MITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKAD--MVDD-EELLELVEIEIRELLNKY 70 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~-------~qt~e~l~~~~~~~i~~iiv~iNK~D--~~~~-~~~~~~i~~~i~~~l~~~ 70 (502)
|++|++.+|+|+|||||.+|++ +||++|+.++..+|+|++|||||||| ++++ +++|+++.+++..+|+.+
T Consensus 102 ~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~ 181 (446)
T PTZ00141 102 MITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKV 181 (446)
T ss_pred HHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhc
Confidence 6789999999999999999984 89999999999999999988899999 5555 688999999999999999
Q ss_pred CCCCCCCeEEEccccccccC-----CCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEE
Q psy15224 71 EFPGNDIPIIKGSAKLALEG-----DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVER 145 (502)
Q Consensus 71 ~~~~~~~~ii~iSa~~g~~~-----~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~s 145 (502)
++..+++|+||+||++|.|. .++||+|+ +|+++|.+ +++|.+..+.|++|+|+++|+++|.|++++|+|.+
T Consensus 182 g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~---tL~~~l~~-~~~~~~~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~ 257 (446)
T PTZ00141 182 GYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGP---TLLEALDT-LEPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVET 257 (446)
T ss_pred CCCcccceEEEeecccCCCcccCCCCCcccchH---HHHHHHhC-CCCCCcCCCCCeEEEEEEEEecCCceEEEEEEEEc
Confidence 98766799999999999874 35899765 57777765 44566677899999999999999999999999999
Q ss_pred eeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCC-CC-CcccEEEEEEEEe
Q psy15224 146 GIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG-SI-KPHKHFTGEIYAL 223 (502)
Q Consensus 146 G~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~-~~-~~~~~f~a~v~~l 223 (502)
|+|++||+|.++|. +..++|++|+.++.++++|.|||+|+++|++++..++++|++|++++ .+ ..+..|+|+|.||
T Consensus 258 G~l~~Gd~v~i~P~--~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~~~~p~~~~~~f~a~i~~l 335 (446)
T PTZ00141 258 GILKPGMVVTFAPS--GVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDSKNDPAKECADFTAQVIVL 335 (446)
T ss_pred ceEecCCEEEEccC--CcEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecCCCCCCccceEEEEEEEEE
Confidence 99999999999985 47899999999999999999999999999999889999999999874 33 4578999999999
Q ss_pred ecCCCCCCcccccCCeeEEEeeeeeEEEEEEcc-------------CCCccccCCCEEEEEEEeCceEecccC------C
Q psy15224 224 SKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVRLINPIAMEEG------L 284 (502)
Q Consensus 224 ~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~~~~~~~~~v~~~~~~pi~~~~~------~ 284 (502)
+++ +++.+||++.+|+++.+++|++..+ +++.++.+|+.+.|+|++++|+|++++ +
T Consensus 336 ~~~-----~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~~~lg 410 (446)
T PTZ00141 336 NHP-----GQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKPMCVEVFNEYPPLG 410 (446)
T ss_pred CCC-----CccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCceEEeecccCCCCc
Confidence 975 5899999999999999999998643 245689999999999999999999964 7
Q ss_pred eEEEEeCCeEEEEEEEeece
Q psy15224 285 RFAIREGVQQFIQDNLLTKE 304 (502)
Q Consensus 285 r~ilr~~~~~ig~G~i~~~~ 304 (502)
||+||++|+|+|+|.|+...
T Consensus 411 rfilrd~g~tva~G~I~~v~ 430 (446)
T PTZ00141 411 RFAVRDMKQTVAVGVIKSVE 430 (446)
T ss_pred cEEEEECCCEEEEEEEEEEe
Confidence 99999999999999998654
No 13
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-48 Score=362.92 Aligned_cols=291 Identities=22% Similarity=0.302 Sum_probs=255.5
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
|++|+|-||+|||+|||.+|+..||++|..++..+|++|++++||||||+++ ++.|++|..+...|.+++++.. ..+
T Consensus 103 MaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~--~~~ 180 (431)
T COG2895 103 MATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKD--VRF 180 (431)
T ss_pred hhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCc--ceE
Confidence 8999999999999999999999999999999999999999999999999998 8899999999999999999864 589
Q ss_pred EEcccccccc-----CCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEE
Q psy15224 80 IKGSAKLALE-----GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEEL 154 (502)
Q Consensus 80 i~iSa~~g~~-----~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v 154 (502)
||+||+.|.| ..++||.|+++.+.|+.+.- .......||||+|+.+.+....=+-+.|+|.+|++++||+|
T Consensus 181 IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i----~~~~~~~~~RfPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~v 256 (431)
T COG2895 181 IPISALLGDNVVSKSENMPWYKGPTLLEILETVEI----ADDRSAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEV 256 (431)
T ss_pred EechhccCCcccccccCCCcccCccHHHHHhhccc----cccccccceeeceEEecCCCCcccccceeeeccceecCCeE
Confidence 9999999998 35799999987777776542 23345678999999999964322338999999999999999
Q ss_pred EEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCC-CcccEEEEEEEEeecCCCCCCcc
Q psy15224 155 EIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI-KPHKHFTGEIYALSKDEGGRHTP 233 (502)
Q Consensus 155 ~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~~~~~~ 233 (502)
.++| ++...+|++|..++.++++|.+|+.|++.|. +..+++||++|+..+.+ .+...|.|.+.|+... |
T Consensus 257 vvlP--sG~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~~~~~~~~~~f~A~vvWm~~~------p 326 (431)
T COG2895 257 VVLP--SGKTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAADAPPAVADAFDADVVWMDEE------P 326 (431)
T ss_pred EEcc--CCCeeeEEEEeccCCchhhccCCceEEEEEc--ceeecccCcEEEccCCCcchhhhcceeEEEecCC------C
Confidence 9998 5688999999999999999999999999998 78999999999998875 5579999999999976 8
Q ss_pred cccCCeeEEEeeeeeEEEEEEcc-----------CCCccccCCCEEEEEEEeCceEecccC------CeEEEEe--CCeE
Q psy15224 234 FFSNYRPQFYFRTTDVTGSIELP-----------KNKEMVMPGDNVLITVRLINPIAMEEG------LRFAIRE--GVQQ 294 (502)
Q Consensus 234 i~~g~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~~~~~~v~~~~~~pi~~~~~------~r~ilr~--~~~~ 294 (502)
+.+|..+.+..++..+.+++.-+ .....+..|+.+.|++.+++|+++++| +.|||.| +|.|
T Consensus 327 l~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~~a~~l~lN~Ig~v~i~~~~pi~fd~Y~~N~atG~FIlID~~tn~T 406 (431)
T COG2895 327 LLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQEGAESLPLNEIGRVRISFDKPIAFDAYAENRATGSFILIDRLTNGT 406 (431)
T ss_pred CCCCceEEEEecceEEEEEeeeeEEEEeccccccccccccCCCcceEEEEecCCceeecccccCcccccEEEEEcCCCCc
Confidence 99999999999888888877532 255678899999999999999999997 5788854 6789
Q ss_pred EEEEEEeeceeec
Q psy15224 295 FIQDNLLTKEIVN 307 (502)
Q Consensus 295 ig~G~i~~~~~~~ 307 (502)
+|+|.|...+..+
T Consensus 407 VgaGmI~~~l~~~ 419 (431)
T COG2895 407 VGAGMILASLSAN 419 (431)
T ss_pred eeceeeechhhhc
Confidence 9999999876533
No 14
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=5e-47 Score=391.14 Aligned_cols=293 Identities=35% Similarity=0.554 Sum_probs=260.8
Q ss_pred CccccccCCEEEEEEECCC--CCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15224 1 MITGAAQMDGAILVCSAAD--GPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDI 77 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~--g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~ 77 (502)
|+.+++.+|+++||||+++ |+.+||++|+.++..++++.+++++||||+.++ ++.++.+.+++.++++.+++.....
T Consensus 101 ~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~ 180 (425)
T PRK12317 101 MITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDI 180 (425)
T ss_pred HhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcc
Confidence 5678899999999999999 999999999999999998878878999999875 4567788889999998888865568
Q ss_pred eEEEccccccccC-----CCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCC
Q psy15224 78 PIIKGSAKLALEG-----DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGE 152 (502)
Q Consensus 78 ~ii~iSa~~g~~~-----~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd 152 (502)
+++++||++|.|. .++||.| ..|+++|.. +|+|.+..+.||+|+|+++|.++|.|++++|+|.+|+|++||
T Consensus 181 ~ii~iSA~~g~gi~~~~~~~~wy~g---~~L~~~l~~-~~~~~~~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd 256 (425)
T PRK12317 181 PFIPVSAFEGDNVVKKSENMPWYNG---PTLLEALDN-LKPPEKPTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGD 256 (425)
T ss_pred eEEEeecccCCCccccccCCCcccH---HHHHHHHhc-CCCCccccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCC
Confidence 9999999999874 3589975 467777765 566667788999999999999999999999999999999999
Q ss_pred EEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCC-CcccEEEEEEEEeecCCCCCC
Q psy15224 153 ELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI-KPHKHFTGEIYALSKDEGGRH 231 (502)
Q Consensus 153 ~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~~~~ 231 (502)
+|.++|.+ ..++|++|+.++.+++.|.|||.|+++|++++..++++|++|++++++ ..+..|+|++.|++++
T Consensus 257 ~v~i~P~~--~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~~~----- 329 (425)
T PRK12317 257 KVVFMPAG--VVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDNPPTVAEEFTAQIVVLQHP----- 329 (425)
T ss_pred EEEECCCC--CeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCCCCCCcccEEEEEEEEECCC-----
Confidence 99999853 679999999999999999999999999999988999999999988754 5579999999999875
Q ss_pred cccccCCeeEEEeeeeeEEEEEEcc-------------CCCccccCCCEEEEEEEeCceEecccC------CeEEEEeCC
Q psy15224 232 TPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVRLINPIAMEEG------LRFAIREGV 292 (502)
Q Consensus 232 ~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~~~~~~~~~v~~~~~~pi~~~~~------~r~ilr~~~ 292 (502)
+++.+||++.+|+++.+++|++..+ +++.++++|+.+.|+|++.+|+|++++ +||+||++|
T Consensus 330 ~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~~~~~~~~~~lgrfilr~~g 409 (425)
T PRK12317 330 SAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLVIEKVKEIPQLGRFAIRDMG 409 (425)
T ss_pred CcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeEEEeCCcCCCCccEEEEECC
Confidence 5899999999999999999998743 246789999999999999999999997 799999999
Q ss_pred eEEEEEEEeece
Q psy15224 293 QQFIQDNLLTKE 304 (502)
Q Consensus 293 ~~ig~G~i~~~~ 304 (502)
+|+|+|.|++..
T Consensus 410 ~tv~~G~i~~v~ 421 (425)
T PRK12317 410 QTIAAGMVIDVK 421 (425)
T ss_pred CeEEEEEEEEec
Confidence 999999998764
No 15
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=9.4e-47 Score=388.94 Aligned_cols=293 Identities=33% Similarity=0.537 Sum_probs=260.2
Q ss_pred CccccccCCEEEEEEECCCC---CCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCC
Q psy15224 1 MITGAAQMDGAILVCSAADG---PMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGND 76 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g---~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~ 76 (502)
|+.+++.+|+++||+|+++| ..+||.+|+.++..++++++|+++||||++++ ++.++.+.+++.++++..++....
T Consensus 102 ~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~ 181 (426)
T TIGR00483 102 MITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDT 181 (426)
T ss_pred HHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCccc
Confidence 45678999999999999999 88999999999999998888888999999864 567788888999999988886666
Q ss_pred CeEEEccccccccC-----CCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecC
Q psy15224 77 IPIIKGSAKLALEG-----DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVG 151 (502)
Q Consensus 77 ~~ii~iSa~~g~~~-----~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~g 151 (502)
.+++++||++|.|. .++||.|+ +|+++|.+ +++|.+..+.||+|+|+++|+++|.|++++|+|.+|+|++|
T Consensus 182 ~~~i~iSA~~g~ni~~~~~~~~w~~g~---~l~~~l~~-~~~~~~~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~g 257 (426)
T TIGR00483 182 VPFIPISAWNGDNVIKKSENTPWYKGK---TLLEALDA-LEPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPG 257 (426)
T ss_pred ceEEEeeccccccccccccCCccccch---HHHHHHhc-CCCCCCccCCCcEEEEEEEEecCCCeEEEEEEEccceeecC
Confidence 89999999999874 35899754 67888876 55666677899999999999999999999999999999999
Q ss_pred CEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCC-CcccEEEEEEEEeecCCCCC
Q psy15224 152 EELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI-KPHKHFTGEIYALSKDEGGR 230 (502)
Q Consensus 152 d~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~~~ 230 (502)
|+|.++|. +..++|++|+.++.++++|.|||+|+++|++++..++++|++|++++.+ ..+..|+|++.|++++
T Consensus 258 d~v~i~P~--~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~~~---- 331 (426)
T TIGR00483 258 DKVVFEPA--GVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDNPPKVAKEFTAQIVVLQHP---- 331 (426)
T ss_pred CEEEECCC--CcEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCCCCceeeEEEEEEEEECCC----
Confidence 99999985 3789999999999999999999999999999988999999999988654 5578999999999986
Q ss_pred CcccccCCeeEEEeeeeeEEEEEEcc-------------CCCccccCCCEEEEEEEeCceEeccc------CCeEEEEeC
Q psy15224 231 HTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVRLINPIAMEE------GLRFAIREG 291 (502)
Q Consensus 231 ~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~~~~~~~~~v~~~~~~pi~~~~------~~r~ilr~~ 291 (502)
+++.+||++.+|+++.+++|++..+ +++.++++|+.+.|+|++++|+|+++ ++||+||++
T Consensus 332 -~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~~~~grf~lr~~ 410 (426)
T TIGR00483 332 -GAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMVIEAVKEIPPLGRFAIRDM 410 (426)
T ss_pred -CccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCeeEEeecccCCCCccEEEEEC
Confidence 5899999999999999999998633 35678999999999999999999997 589999999
Q ss_pred CeEEEEEEEeece
Q psy15224 292 VQQFIQDNLLTKE 304 (502)
Q Consensus 292 ~~~ig~G~i~~~~ 304 (502)
|+|+|+|.|+...
T Consensus 411 g~tv~~G~v~~~~ 423 (426)
T TIGR00483 411 GQTVAAGMIIDVD 423 (426)
T ss_pred CCEEEEEEEEEee
Confidence 9999999998664
No 16
>KOG0458|consensus
Probab=100.00 E-value=9.1e-46 Score=369.12 Aligned_cols=291 Identities=23% Similarity=0.360 Sum_probs=261.1
Q ss_pred CccccccCCEEEEEEECCCCCC-------cchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHH-hhcC
Q psy15224 1 MITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELL-NKYE 71 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~-------~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l-~~~~ 71 (502)
||+|+++||+|+|||||+.|.+ +||+||+.+++.+|+.++||+|||||+++| +++|++|+..+..|| +.+|
T Consensus 272 mi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~g 351 (603)
T KOG0458|consen 272 MISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCG 351 (603)
T ss_pred hhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999854 999999999999999999999999999999 899999999999999 8899
Q ss_pred CCCCCCeEEEccccccccCC--------CCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEE
Q psy15224 72 FPGNDIPIIKGSAKLALEGD--------TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRV 143 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~--------~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v 143 (502)
|...++.|||+|+++|.|-. ..||+|+ .||+.|++ +..|.+..+.||++.|.++++.++.|..++|+|
T Consensus 352 f~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp---~LL~~id~-~~~p~~~~~kPl~ltIsdi~~~~~~~~~i~gki 427 (603)
T KOG0458|consen 352 FKESSVKFIPISGLSGENLIKIEQENELSQWYKGP---TLLSQIDS-FKIPERPIDKPLRLTISDIYPLPSSGVSISGKI 427 (603)
T ss_pred cccCCcceEecccccCCcccccccchhhhhhhcCC---hHHHHHhh-ccCCCCcccCCeEEEhhheeecCCCeeEEEEEE
Confidence 99888899999999998821 3799887 56677766 556667788899999999999999999999999
Q ss_pred EEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEe-CCCCC-CcccEEEEEEE
Q psy15224 144 ERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLA-KPGSI-KPHKHFTGEIY 221 (502)
Q Consensus 144 ~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~-~~~~~-~~~~~f~a~v~ 221 (502)
++|.|+.||+|+++|+ ...+.|++|.+.+++...|.|||.|.+.|.++....+..|++++ .+..+ +.+..|.+++.
T Consensus 428 esG~iq~gqkl~i~~s--~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~~~~~~i~~~~~f~~~~~ 505 (603)
T KOG0458|consen 428 ESGYIQPGQKLYIMTS--REDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIADSGPQFPISKTTRFVARIT 505 (603)
T ss_pred eccccccCCEEEEecC--cceEEEEeeecCCCcceeEeeCCEEEEecCccChhhcccceeeecCCCccccceeEEEEEEE
Confidence 9999999999999974 47899999999999999999999999999999999999999999 44444 44578999999
Q ss_pred EeecCCCCCCcccccCCeeEEEeeeeeEEEEEE-------------ccCCCccccCCCEEEEEEEeCceEecccC-----
Q psy15224 222 ALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIE-------------LPKNKEMVMPGDNVLITVRLINPIAMEEG----- 283 (502)
Q Consensus 222 ~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~-------------~~~~~~~~~~~~~~~v~~~~~~pi~~~~~----- 283 (502)
||+.. .|+..|.+..+|+|+...+|++. ..+.++++.+|+.|.++++...|+|++.+
T Consensus 506 ~f~~~-----~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~vele~~~pI~~etf~~~~~ 580 (603)
T KOG0458|consen 506 TFDIN-----LPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVELETERPICLETFAENRA 580 (603)
T ss_pred Eeecc-----ccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeeeccccCchhhhhhhhchh
Confidence 99975 68999999999999888877653 12456889999999999999999999976
Q ss_pred -CeEEEEeCCeEEEEEEEee
Q psy15224 284 -LRFAIREGVQQFIQDNLLT 302 (502)
Q Consensus 284 -~r~ilr~~~~~ig~G~i~~ 302 (502)
+||++|..|+|||+|.|++
T Consensus 581 lgr~vlr~~g~TiAaG~V~~ 600 (603)
T KOG0458|consen 581 LGRVVLRKSGSTIAAGKVTE 600 (603)
T ss_pred heeEEEeccCceeeeeeEEe
Confidence 7999999999999999985
No 17
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=3.6e-44 Score=371.04 Aligned_cols=317 Identities=20% Similarity=0.226 Sum_probs=262.9
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
|++|++.+|+++|||||.+|+++||++|+.++..++++++|+++||||++++ ++.++++.+++..+++.+++. ...++
T Consensus 124 ~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~i 202 (474)
T PRK05124 124 MATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGN-LDIRF 202 (474)
T ss_pred HHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCC-CCceE
Confidence 5678899999999999999999999999999999999888888999999865 567788888888888877642 35899
Q ss_pred EEccccccccC-----CCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEE
Q psy15224 80 IKGSAKLALEG-----DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEEL 154 (502)
Q Consensus 80 i~iSa~~g~~~-----~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v 154 (502)
+|+||++|.|. .++||.|+ .|++.|.. +|.|.+..+.|++|+|+++++.+.....++|+|.+|+|++||+|
T Consensus 203 ipvSA~~g~ni~~~~~~~~wy~G~---tLl~~L~~-i~~~~~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v 278 (474)
T PRK05124 203 VPLSALEGDNVVSQSESMPWYSGP---TLLEVLET-VDIQRVVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRV 278 (474)
T ss_pred EEEEeecCCCcccccccccccchh---hHHHHHhh-cCCCCCCCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEE
Confidence 99999999884 35899765 45565554 55566667899999999998754322237899999999999999
Q ss_pred EEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCC-CcccEEEEEEEEeecCCCCCCcc
Q psy15224 155 EIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI-KPHKHFTGEIYALSKDEGGRHTP 233 (502)
Q Consensus 155 ~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~~~~~~ 233 (502)
.++|. +..++|++|+.++.++++|.|||+|+++|++ ..++++|++|++++.+ ..+..|+|++.|++. .+
T Consensus 279 ~i~P~--~~~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~~~~~~~~~~f~a~i~~l~~------~~ 348 (474)
T PRK05124 279 KVLPS--GKESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAADEALQAVQHASADVVWMAE------QP 348 (474)
T ss_pred EEecC--CceEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECCCCCCccceEEEEEEEEeCC------cc
Confidence 99985 4789999999999999999999999999984 5789999999998764 667999999999983 47
Q ss_pred cccCCeeEEEeeeeeEEEEEEccC-----------CCccccCCCEEEEEEEeCceEecccC------CeEEE--EeCCeE
Q psy15224 234 FFSNYRPQFYFRTTDVTGSIELPK-----------NKEMVMPGDNVLITVRLINPIAMEEG------LRFAI--REGVQQ 294 (502)
Q Consensus 234 i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~v~~~~~~pi~~~~~------~r~il--r~~~~~ 294 (502)
+.+|+++.+|+|+.+++|++..+. ++.++++|+.+.|+|++++|+|++++ +||+| |++++|
T Consensus 349 i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~~~~~~l~~g~~a~v~l~~~~pv~~e~~~~~~~lGRfil~dr~~~~t 428 (474)
T PRK05124 349 LQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQREAENLPLNGIGLVELTFDEPLVLDPYQQNRVTGGFIFIDRLTNVT 428 (474)
T ss_pred cCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcccCccccCCCCEEEEEEEECCeeccccCCcCCcceeEEEEECCCCce
Confidence 999999999999999999997442 35689999999999999999999987 46999 567899
Q ss_pred EEEEEEeeceeeccCcccccc--chhhHHHhhccccceEE
Q psy15224 295 FIQDNLLTKEIVNSNKINIDK--GKEYIERSINNKKRWYV 332 (502)
Q Consensus 295 ig~G~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~WYv 332 (502)
+|+|.|+++...-+++.++.. -.++.....+.=.+|++
T Consensus 429 va~G~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (474)
T PRK05124 429 VGAGMVREPLAQATAAPSEFSAFELELNALVRRHFPHWGA 468 (474)
T ss_pred EEEEEEeccccccccccccchhhHHHHHHHHHHhCcccch
Confidence 999999988755555555444 25555666666667764
No 18
>KOG0459|consensus
Probab=100.00 E-value=2.9e-44 Score=342.21 Aligned_cols=290 Identities=28% Similarity=0.395 Sum_probs=258.3
Q ss_pred CccccccCCEEEEEEECCCCCC-------cchHHHHHHHHHhCCCeEEEEEEcCCC--CCh-HHHHHHHHHHHHHHHhhc
Q psy15224 1 MITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADM--VDD-EELLELVEIEIRELLNKY 70 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~-------~qt~e~l~~~~~~~i~~iiv~iNK~D~--~~~-~~~~~~i~~~i~~~l~~~ 70 (502)
||.||++||+++||++|..|.+ +||+||..+++.+|+.++|++|||||- ++| +++|+++.+++..+|+.+
T Consensus 174 mI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~ 253 (501)
T KOG0459|consen 174 MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKL 253 (501)
T ss_pred hccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHh
Confidence 8999999999999999988754 799999999999999999999999996 556 789999999999999999
Q ss_pred CCCCC-CCeEEEccccccccC------CCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEE
Q psy15224 71 EFPGN-DIPIIKGSAKLALEG------DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRV 143 (502)
Q Consensus 71 ~~~~~-~~~ii~iSa~~g~~~------~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v 143 (502)
||... +..++|+|+++|.|. ..+||.++. +++.+++ +|...+..+.|++++|.+-|+ .+|+++.|+|
T Consensus 254 g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~---fl~~ld~-l~~~~R~~~GP~~~pI~~Kyk--dmGTvv~GKv 327 (501)
T KOG0459|consen 254 GFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPI---FLEYLDE-LPHLERILNGPIRCPVANKYK--DMGTVVGGKV 327 (501)
T ss_pred cccCCCCceeeecccccccchhhcccccCCcccCCc---cceehhc-cCcccccCCCCEEeehhhhcc--ccceEEEEEe
Confidence 98764 567899999999873 368997764 5666666 777788899999999999885 4789999999
Q ss_pred EEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCC-CcccEEEEEEEE
Q psy15224 144 ERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI-KPHKHFTGEIYA 222 (502)
Q Consensus 144 ~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~-~~~~~f~a~v~~ 222 (502)
.||+|++||.+.++|.+ ..+.|.+|+..+..++.+.+|+.+-+.|+|++..+|+.|.+||+++++ ++...|.|+|.+
T Consensus 328 EsGsi~kg~~lvvMPnk--~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n~~~s~~~F~aqi~I 405 (501)
T KOG0459|consen 328 ESGSIKKGQQLVVMPNK--TNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNNPCKSGRTFDAQIVI 405 (501)
T ss_pred cccceecCCeEEEccCC--cceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecCCCccccccEEEEEEEE
Confidence 99999999999999854 678999999999999999999999999999999999999999999997 566999999999
Q ss_pred eecCCCCCCcccccCCeeEEEeeeeeEEEEEEc------------cCCCccccCCCEEEEEEEeCceEecccC------C
Q psy15224 223 LSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIEL------------PKNKEMVMPGDNVLITVRLINPIAMEEG------L 284 (502)
Q Consensus 223 l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~------------~~~~~~~~~~~~~~v~~~~~~pi~~~~~------~ 284 (502)
+.+. +-|.+||++.+|++++-..|.|.+ .+.+.+++.|+.+.++++...|+|++.+ +
T Consensus 406 lE~~-----sIi~~GY~~VlHIht~ieEv~i~li~~idkktg~ksKkrprFvkq~~~~iarl~t~~~iCle~fkd~pqmg 480 (501)
T KOG0459|consen 406 LEHK-----SIICAGYSCVLHIHTAVEEVEIKLIHLIDKKTGEKSKKRPRFVKQGQKCIARLETEGPICLETFKDYPQMG 480 (501)
T ss_pred EecC-----ceeccCcceEeeeeeehhheeeeeeeeecccccccccCCCeeecCCcEEEEEEecCCcEehhhcccchhhc
Confidence 9985 468899999999999877777653 2366789999999999999999999986 7
Q ss_pred eEEEEeCCeEEEEEEEeec
Q psy15224 285 RFAIREGVQQFIQDNLLTK 303 (502)
Q Consensus 285 r~ilr~~~~~ig~G~i~~~ 303 (502)
||.|||.|.|||+|.|+.-
T Consensus 481 RFtLRdegkTIAiGkV~kv 499 (501)
T KOG0459|consen 481 RFTLRDEGKTIAIGKVLKV 499 (501)
T ss_pred ceEEecCCcEEEEEEEEee
Confidence 9999999999999999853
No 19
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=3.1e-43 Score=359.04 Aligned_cols=284 Identities=24% Similarity=0.309 Sum_probs=244.3
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
|+.|++.+|+++|||||.+|+++||++|+.++..++++++|+++||||++++ ++.++++.+++..+++.+++. +.++
T Consensus 97 ~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~i 174 (406)
T TIGR02034 97 MATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFR--DVTF 174 (406)
T ss_pred HHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCC--CccE
Confidence 5678999999999999999999999999999999999988888999999875 567788888888888888774 5789
Q ss_pred EEccccccccC-----CCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEE
Q psy15224 80 IKGSAKLALEG-----DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEEL 154 (502)
Q Consensus 80 i~iSa~~g~~~-----~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v 154 (502)
+|+||++|.|. .++||.+++ |++.|.. ++.|.+..+.|++|+|+++++....+.-++|+|.+|+|++||+|
T Consensus 175 ipiSA~~g~ni~~~~~~~~wy~g~t---L~~~L~~-~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v 250 (406)
T TIGR02034 175 IPLSALKGDNVVSRSESMPWYSGPT---LLEILET-VEVERDAQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEV 250 (406)
T ss_pred EEeecccCCCCcccccCCCccchhH---HHHHHHh-cCCCCCcCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEE
Confidence 99999999874 358997654 5555554 45555677899999999998754433337899999999999999
Q ss_pred EEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCC-CcccEEEEEEEEeecCCCCCCcc
Q psy15224 155 EIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI-KPHKHFTGEIYALSKDEGGRHTP 233 (502)
Q Consensus 155 ~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~~~~~~ 233 (502)
.++|. +..++|++|+.++.++++|.|||+|+++|++ ..++++|++|++++++ ..+..|+|++.++++ .+
T Consensus 251 ~i~P~--~~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~~~~~f~a~i~~l~~------~~ 320 (406)
T TIGR02034 251 VVLPS--GRSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPEVADQFAATLVWMAE------EP 320 (406)
T ss_pred EEeCC--CcEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCCcceEEEEEEEEeCh------hh
Confidence 99985 4789999999999999999999999999984 5789999999998874 667999999999885 38
Q ss_pred cccCCeeEEEeeeeeEEEEEEccC-----------CCccccCCCEEEEEEEeCceEecccCC------eEEE--EeCCeE
Q psy15224 234 FFSNYRPQFYFRTTDVTGSIELPK-----------NKEMVMPGDNVLITVRLINPIAMEEGL------RFAI--REGVQQ 294 (502)
Q Consensus 234 i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~v~~~~~~pi~~~~~~------r~il--r~~~~~ 294 (502)
+.+|+++++|+|+.+++|++..+. ++..+.+|+.+.|+|++++|+|++++. ||+| |++++|
T Consensus 321 i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~~~~~~l~~~~~~~v~l~~~~p~~~~~~~~~~~lGr~~l~d~~~~~t 400 (406)
T TIGR02034 321 LLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEKGAAKSLELNEIGRVNLSLDEPIAFDPYAENRTTGAFILIDRLSNRT 400 (406)
T ss_pred cCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcccCCcccCCCCEEEEEEEECCeeccCcccCCCcceeEEEEECCCCCe
Confidence 999999999999999999997432 346788999999999999999999874 9999 678999
Q ss_pred EEEEEE
Q psy15224 295 FIQDNL 300 (502)
Q Consensus 295 ig~G~i 300 (502)
+|+|.|
T Consensus 401 va~G~I 406 (406)
T TIGR02034 401 VGAGMI 406 (406)
T ss_pred EEEEeC
Confidence 999975
No 20
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=2e-42 Score=353.48 Aligned_cols=281 Identities=25% Similarity=0.325 Sum_probs=240.9
Q ss_pred CccccccCCEEEEEEECCCC-CCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 1 MITGAAQMDGAILVCSAADG-PMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g-~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
|++|++.+|+++|||||.+| +++||++|+.++..+|++++|+|+||||+++. +..++..+++.++++.+.. ...|+
T Consensus 134 m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~-~~~~~~~~ei~~~l~~~~~--~~~~i 210 (460)
T PTZ00327 134 MLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKE-AQAQDQYEEIRNFVKGTIA--DNAPI 210 (460)
T ss_pred HHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCH-HHHHHHHHHHHHHHHhhcc--CCCeE
Confidence 67899999999999999996 79999999999999999988888999999975 4455666677777765432 46899
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCC--------CeEEEEEEEEEeeeecC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG--------RGTVVTGRVERGIVRVG 151 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~--------~G~v~~g~v~sG~l~~g 151 (502)
+|+||++|. +++.|++.|.+.+|.|.+..+.|++|+|+++|.+.+ .|+|++|+|.+|+|++|
T Consensus 211 ipVSA~~G~----------nI~~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~G 280 (460)
T PTZ00327 211 IPISAQLKY----------NIDVVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVG 280 (460)
T ss_pred EEeeCCCCC----------CHHHHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecC
Confidence 999999997 899999999988888878888999999999998764 79999999999999999
Q ss_pred CEEEEeecCC-----C------eeEEEEEEEEcceecceeecCCeEEEEec---CCCccCcccceEEeCCCCCCc-ccEE
Q psy15224 152 EELEIIGIKD-----T------VKTTCTGVEMFRKLLDQGQAGDNIGLLLR---GTKREDVERGQVLAKPGSIKP-HKHF 216 (502)
Q Consensus 152 d~v~i~p~~~-----~------~~~~V~~i~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~-~~~f 216 (502)
|+|.++|... + ..++|+||+.++.++++|.|||+++++|+ +++..++.+|++|++++.+++ ...|
T Consensus 281 d~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~ 360 (460)
T PTZ00327 281 DEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEI 360 (460)
T ss_pred CEEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCCCCceeEEE
Confidence 9999999531 1 35799999999999999999999999987 677789999999999876544 5699
Q ss_pred EEEEEEeecCC-----CCC----CcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEE
Q psy15224 217 TGEIYALSKDE-----GGR----HTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFA 287 (502)
Q Consensus 217 ~a~v~~l~~~~-----~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~i 287 (502)
+|++.|+++.. +++ .+++..|+++++|+++.++.|++..+.+. . .++|++.+|+|+.+|+||+
T Consensus 361 ~a~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i~~~------~--~~~l~l~~P~~~~~gdr~i 432 (460)
T PTZ00327 361 EIQYYLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTTTGGRVVGIKDD------G--IAKLELTTPVCTSVGEKIA 432 (460)
T ss_pred EEEEEEecccccccccccccccCCcccCCCCEEEEEecccEEEEEEEEeCCC------e--EEEEEECccEeccCCCEEE
Confidence 99999998731 111 26899999999999999999999865432 1 6789999999999999999
Q ss_pred EEe---C-CeEEEEEEEee
Q psy15224 288 IRE---G-VQQFIQDNLLT 302 (502)
Q Consensus 288 lr~---~-~~~ig~G~i~~ 302 (502)
||+ . ++|+|+|.|..
T Consensus 433 lr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 433 LSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred EEeccCCCcEEEEEEEEcC
Confidence 985 3 58999999875
No 21
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=364.31 Aligned_cols=338 Identities=21% Similarity=0.241 Sum_probs=271.4
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
|+.|++.+|+++|||||.+|+++||++|+.++..++++++|+++||||++++ ++.++++..++..+++.+++. +.++
T Consensus 121 ~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~--~~~i 198 (632)
T PRK05506 121 MVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLH--DVTF 198 (632)
T ss_pred HHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCC--CccE
Confidence 5678999999999999999999999999999999999888888999999874 467788888888888888883 5789
Q ss_pred EEccccccccCC-----CCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEE
Q psy15224 80 IKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEEL 154 (502)
Q Consensus 80 i~iSa~~g~~~~-----~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v 154 (502)
+|+||++|.|.. ++||.++ +|++.|.. ++.+....+.|++|+|+++++....+.-++|+|.+|+|++||+|
T Consensus 199 ipiSA~~g~ni~~~~~~~~wy~g~---tL~~~l~~-~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v 274 (632)
T PRK05506 199 IPISALKGDNVVTRSARMPWYEGP---SLLEHLET-VEIASDRNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEV 274 (632)
T ss_pred EEEecccCCCccccccCCCcccHh---HHHHHHhc-CCCCCCcCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEE
Confidence 999999998743 5899654 56666665 34455557899999999998754222337899999999999999
Q ss_pred EEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCC-CcccEEEEEEEEeecCCCCCCcc
Q psy15224 155 EIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI-KPHKHFTGEIYALSKDEGGRHTP 233 (502)
Q Consensus 155 ~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~~~~~~ 233 (502)
.++|. +..++|++|++++.++++|.|||+|+++|++ ..++++|++|++++++ ..+..|+|++.|++++ +
T Consensus 275 ~i~P~--~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~~~~~~~~~~f~a~i~~l~~~------~ 344 (632)
T PRK05506 275 VVLPS--GKTSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARADNRPEVADQFDATVVWMAEE------P 344 (632)
T ss_pred EEcCC--CceEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecCCCCCcceeEEEEEEEEeccc------c
Confidence 99985 4789999999999999999999999999984 5789999999998764 4578999999999864 6
Q ss_pred cccCCeeEEEeeeeeEEEEEEcc-----------CCCccccCCCEEEEEEEeCceEecccC------CeEEEEe--CCeE
Q psy15224 234 FFSNYRPQFYFRTTDVTGSIELP-----------KNKEMVMPGDNVLITVRLINPIAMEEG------LRFAIRE--GVQQ 294 (502)
Q Consensus 234 i~~g~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~~~~~~v~~~~~~pi~~~~~------~r~ilr~--~~~~ 294 (502)
+.+||++++|+|+.+++|++..+ ..+.++++|+.+.|+|++++|+|++++ +||+||| +++|
T Consensus 345 ~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~~~p~~l~~g~~~~v~l~~~~pi~~e~~~~~~~lGRfilrdr~~~~T 424 (632)
T PRK05506 345 LLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLERLAAKTLELNEIGRCNLSTDAPIAFDPYARNRTTGSFILIDRLTNAT 424 (632)
T ss_pred cCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCccCCcceeCCCCEEEEEEEECCEEeeeeccccccCceEEEEeccCCce
Confidence 78999999999999999999743 245789999999999999999999987 5799955 8999
Q ss_pred EEEEEEeeceeeccCccccccc---hhhHHHhhccccceEEEeeccCchHH-HHHHHHHHHHhcC
Q psy15224 295 FIQDNLLTKEIVNSNKINIDKG---KEYIERSINNKKRWYVIHSYSGMEKN-VQRKLIERINKLG 355 (502)
Q Consensus 295 ig~G~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~WYvl~t~~~~E~~-v~~~L~~~~~~~~ 355 (502)
+|+|.|++++. +..+.+.... ...++........-+++.=.+|.-+. +++.|.+++...+
T Consensus 425 va~G~I~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~ 488 (632)
T PRK05506 425 VGAGMIDFALR-RATNVHWQASDVSREARAARKGQKPATVWFTGLSGSGKSTIANLVERRLHALG 488 (632)
T ss_pred EEEEEECcccc-ccccccccccccCHHHHHHHhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcC
Confidence 99999999887 4444444333 22222333333444555555777764 4566666655433
No 22
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=4e-41 Score=318.64 Aligned_cols=278 Identities=31% Similarity=0.492 Sum_probs=246.3
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcC--------------
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE-------------- 71 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~-------------- 71 (502)
+..|+.+|+|.|++|++..|+||+.++.++++|.|++ +||+|+.+. ++++.+.+++..+|+..+
T Consensus 225 qk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVv-vTK~D~~~d-dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~ 302 (527)
T COG5258 225 QKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVV-VTKIDMVPD-DRFQGVVEEISALLKRVGRIPLIVKDTDDVVL 302 (527)
T ss_pred cccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEE-EEecccCcH-HHHHHHHHHHHHHHHHhcccceeeeccchhHH
Confidence 4689999999999999999999999999999997665 999999985 888889999999887644
Q ss_pred ------CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCC-CCCCCCeeEEEeEEEeeCCCeEEEEEEEE
Q psy15224 72 ------FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN-RAIDGAFLLPVEDVFSISGRGTVVTGRVE 144 (502)
Q Consensus 72 ------~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~-~~~~~p~~~~v~~~~~~~~~G~v~~g~v~ 144 (502)
....-+|++.+|+.+|. +++ ||+.+..++|... .....||+|+|+++|.+.|+|+|+.|.|.
T Consensus 303 aa~a~k~~~~vvPi~~tSsVTg~----------Gld-lL~e~f~~Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~ 371 (527)
T COG5258 303 AAKAMKAGRGVVPIFYTSSVTGE----------GLD-LLDEFFLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVK 371 (527)
T ss_pred hhhhhhcCCceEEEEEEecccCc----------cHH-HHHHHHHhCCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEE
Confidence 11114689999999986 554 5555555687653 35668999999999999999999999999
Q ss_pred EeeeecCCEEEEeecCCC--eeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEE
Q psy15224 145 RGIVRVGEELEIIGIKDT--VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYA 222 (502)
Q Consensus 145 sG~l~~gd~v~i~p~~~~--~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~ 222 (502)
+|.++.||+++++|.+.+ ..++|+||++++..+++|.||++++++++|++...+++|++|+....|.+...|+|++++
T Consensus 372 ~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~~~pkaVref~AeV~v 451 (527)
T COG5258 372 SGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAGADPKAVREFDAEVLV 451 (527)
T ss_pred eeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEeccccCCcEEEEEecccCHHHHhcceEecCCCCchhhheecceEEE
Confidence 999999999999997654 688999999999999999999999999999999999999999987668889999999999
Q ss_pred eecCCCCCCcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeC-ceEecccCCeEEEEeCCeEEEEEEEe
Q psy15224 223 LSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLI-NPIAMEEGLRFAIREGVQQFIQDNLL 301 (502)
Q Consensus 223 l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~-~pi~~~~~~r~ilr~~~~~ig~G~i~ 301 (502)
|.|| +.|..||.+.+|.-+++.+++++ ..+..++++||...++++|. +|-.++.|++|+||++ ++.|.|.|+
T Consensus 452 l~HP-----T~I~aGye~v~H~etI~e~~~f~-~id~~~L~~GD~g~vr~~fkyrP~~v~eGQ~fvFReG-rskgvG~v~ 524 (527)
T COG5258 452 LRHP-----TTIRAGYEPVFHYETIREAVYFE-EIDKGFLMPGDRGVVRMRFKYRPHHVEEGQKFVFREG-RSKGVGRVI 524 (527)
T ss_pred EeCC-----cEEecCceeeeEeeEeeheeEEE-EcccccccCCCcceEEEEEEeCchhhccCcEEEEecC-CCccceEEe
Confidence 9997 78999999999999999999997 44557899999999999998 9999999999999976 999999998
Q ss_pred ec
Q psy15224 302 TK 303 (502)
Q Consensus 302 ~~ 303 (502)
..
T Consensus 525 ~~ 526 (527)
T COG5258 525 RV 526 (527)
T ss_pred cc
Confidence 64
No 23
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=6e-41 Score=355.59 Aligned_cols=276 Identities=27% Similarity=0.435 Sum_probs=240.3
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
|++|++.+|+++|||||++|+++||++|+.++..+|++++|||+||||+++. +.++.+.+++.++++..++. ..|++
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~-~~~~~v~~ei~~~l~~~~~~--~~~ii 144 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE-ARIAEVRRQVKAVLREYGFA--EAKLF 144 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCH-HHHHHHHHHHHHHHHhcCCC--CCcEE
Confidence 6789999999999999999999999999999999999987777999999874 66677778888888877663 47899
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK 160 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~ 160 (502)
|+||++|. ++.+|++.|.+. +.+....+.||+|+|+++|.++|.|+|++|+|.+|+|++||++.+.|.
T Consensus 145 ~VSA~tG~----------gI~~L~~~L~~~-~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~- 212 (614)
T PRK10512 145 VTAATEGR----------GIDALREHLLQL-PEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGV- 212 (614)
T ss_pred EEeCCCCC----------CCHHHHHHHHHh-hccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCC-
Confidence 99999987 889999999874 444555789999999999999999999999999999999999999974
Q ss_pred CCeeEEEEEEEEcceecceeecCCeEEEEecC-CCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCCCcccccCCe
Q psy15224 161 DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRG-TKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYR 239 (502)
Q Consensus 161 ~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~-~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~ 239 (502)
+..++|++|+.++.++++|.||++|+++|+| ++..++++|++|++++.+.++..+.+. +... .|+..|++
T Consensus 213 -~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~~~~~~~~~~~~---l~~~-----~~l~~~~~ 283 (614)
T PRK10512 213 -NKPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADAPPEPFTRVIVE---LQTH-----TPLTQWQP 283 (614)
T ss_pred -CCcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCCCCccceeEEEE---EcCC-----ccCCCCCE
Confidence 4678999999999999999999999999997 888999999999987655555554433 4432 47899999
Q ss_pred eEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEe--CCeEEEEEEEeeceeeccC
Q psy15224 240 PQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIRE--GVQQFIQDNLLTKEIVNSN 309 (502)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~--~~~~ig~G~i~~~~~~~~~ 309 (502)
+++|+|+.++.|++... +.+.+++.+++|+++..|+||+||+ ..+|+|+|.|+.+.+.+..
T Consensus 284 ~~~~~gt~~~~~~i~~l---------~~~~~~l~l~~p~~~~~gdr~ilr~~s~~~tigGg~Vld~~~~~~~ 346 (614)
T PRK10512 284 LHIHHAASHVTGRVSLL---------EDNLAELVLDTPLWLADNDRLVLRDISARNTLAGARVVMLNPPRRG 346 (614)
T ss_pred EEEEEcccEEEEEEEEc---------CCeEEEEEECCcccccCCCEEEEEeCCCCEEEEEEEEcccCCcccc
Confidence 99999999999999866 2357899999999999999999998 5699999999998776654
No 24
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=9.2e-39 Score=326.47 Aligned_cols=278 Identities=30% Similarity=0.429 Sum_probs=232.9
Q ss_pred CccccccCCEEEEEEECCCCC-CcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 1 MITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~-~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
|++|++.+|+++|||||++|. .+||++|+.++..++++++++++||||+++. +......+++.++++... ....|+
T Consensus 97 ~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~-~~~~~~~~~i~~~l~~~~--~~~~~i 173 (406)
T TIGR03680 97 MLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK-EKALENYEEIKEFVKGTV--AENAPI 173 (406)
T ss_pred HHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH-HHHHHHHHHHHhhhhhcc--cCCCeE
Confidence 567889999999999999998 8999999999999999888888999999875 222333345666665432 235789
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCC--------CeEEEEEEEEEeeeecC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG--------RGTVVTGRVERGIVRVG 151 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~--------~G~v~~g~v~sG~l~~g 151 (502)
+|+||++|. ++.+|++.|.+.+|.|.+..+.|++|+|+++|.+++ +|+|++|+|.+|+|++|
T Consensus 174 i~vSA~~g~----------gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~g 243 (406)
T TIGR03680 174 IPVSALHNA----------NIDALLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVG 243 (406)
T ss_pred EEEECCCCC----------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCC
Confidence 999999987 899999999988887777788999999999998765 57799999999999999
Q ss_pred CEEEEeecCC----C------eeEEEEEEEEcceecceeecCCeEEEEec---CCCccCcccceEEeCCCCC-CcccEEE
Q psy15224 152 EELEIIGIKD----T------VKTTCTGVEMFRKLLDQGQAGDNIGLLLR---GTKREDVERGQVLAKPGSI-KPHKHFT 217 (502)
Q Consensus 152 d~v~i~p~~~----~------~~~~V~~i~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~-~~~~~f~ 217 (502)
|+|.++|... + ..++|+||+.++.++++|.|||+|+++|+ +++..++.+|++|++++.+ +.+..|+
T Consensus 244 d~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~~~~~~~~f~ 323 (406)
T TIGR03680 244 DEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGTLPPVWESLE 323 (406)
T ss_pred CEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCCCCCceeEEE
Confidence 9999998631 1 24799999999999999999999999984 6778899999999999764 4558999
Q ss_pred EEEEEeecCCCC----CCcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEE--EeC
Q psy15224 218 GEIYALSKDEGG----RHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAI--REG 291 (502)
Q Consensus 218 a~v~~l~~~~~~----~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~il--r~~ 291 (502)
|++.|+.+..+. ..+++..|+++++|+++.+++|++..+++ + .+++++.+|+|+..|+||+| |.+
T Consensus 324 a~i~~l~~~~~~~~~~~~~~i~~g~~~~l~~gt~~~~~~v~~~~~-------~--~~~l~l~~p~~~~~g~r~~~~~~~~ 394 (406)
T TIGR03680 324 LEVHLLERVVGTEEELKVEPIKTGEVLMLNVGTATTVGVVTSARK-------D--EIEVKLKRPVCAEEGDRVAISRRVG 394 (406)
T ss_pred EEEEEEecccCcccccccccCCCCCEEEEEEccceEEEEEEEcCC-------c--EEEEEECCcEEcCCCCEEEEEEecC
Confidence 999999864211 12689999999999999999999986542 3 47788999999999999998 455
Q ss_pred C--eEEEEEEE
Q psy15224 292 V--QQFIQDNL 300 (502)
Q Consensus 292 ~--~~ig~G~i 300 (502)
+ +++|+|.|
T Consensus 395 ~~~~~~g~g~~ 405 (406)
T TIGR03680 395 GRWRLIGYGII 405 (406)
T ss_pred CceEEEEEEEe
Confidence 5 99999987
No 25
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=3.5e-38 Score=321.82 Aligned_cols=278 Identities=29% Similarity=0.417 Sum_probs=232.1
Q ss_pred CccccccCCEEEEEEECCCCC-CcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 1 MITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~-~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
|+.|++.+|++++|+|+.+|. .+||.+|+..+..++++.+++|+||+|+++. +......+++..+++... ....++
T Consensus 102 ~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~-~~~~~~~~~i~~~l~~~~--~~~~~i 178 (411)
T PRK04000 102 MLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK-ERALENYEQIKEFVKGTV--AENAPI 178 (411)
T ss_pred HHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc-hhHHHHHHHHHHHhcccc--CCCCeE
Confidence 457888999999999999998 8999999999999998877777999999875 222233345555655322 135789
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCC--------CeEEEEEEEEEeeeecC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG--------RGTVVTGRVERGIVRVG 151 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~--------~G~v~~g~v~sG~l~~g 151 (502)
+++||++|. ++.+|++.|.+.+|+|.+..+.|++|+|+++|.+++ .|+|++|+|.+|+|++|
T Consensus 179 i~vSA~~g~----------gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~g 248 (411)
T PRK04000 179 IPVSALHKV----------NIDALIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVG 248 (411)
T ss_pred EEEECCCCc----------CHHHHHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecC
Confidence 999999987 899999999988888877789999999999998765 46799999999999999
Q ss_pred CEEEEeecCC----------CeeEEEEEEEEcceecceeecCCeEEEEec---CCCccCcccceEEeCCCCC-CcccEEE
Q psy15224 152 EELEIIGIKD----------TVKTTCTGVEMFRKLLDQGQAGDNIGLLLR---GTKREDVERGQVLAKPGSI-KPHKHFT 217 (502)
Q Consensus 152 d~v~i~p~~~----------~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~-~~~~~f~ 217 (502)
|+|.++|... ...++|++|+.++.++++|.|||+|+++|+ +++..++++|++|++++++ +.+..|+
T Consensus 249 d~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~ 328 (411)
T PRK04000 249 DEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVWESLT 328 (411)
T ss_pred CEEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCceEEEE
Confidence 9999998631 025799999999999999999999999986 6677889999999998775 4568999
Q ss_pred EEEEEeecCCCCC----CcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEE--EeC
Q psy15224 218 GEIYALSKDEGGR----HTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAI--REG 291 (502)
Q Consensus 218 a~v~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~il--r~~ 291 (502)
|++.++++..+.+ .+++.+|+++.+|+++.+++|++..+++ + .+++++.+|+|+.+|+||+| |++
T Consensus 329 a~v~~l~~~~~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~-------~--~~~~~l~~p~~~~~g~r~~~~~~~~ 399 (411)
T PRK04000 329 IEVHLLERVVGTKEELKVEPIKTGEPLMLNVGTATTVGVVTSARK-------D--EAEVKLKRPVCAEEGDRVAISRRVG 399 (411)
T ss_pred EEEEEEEhhcCccccccCCCCCCCCEEEEEEeccEEEEEEEEcCC-------c--EEEEEECCcEecCCCCEEEEEEecC
Confidence 9999998721111 2589999999999999999999986642 3 57788999999999999999 677
Q ss_pred C--eEEEEEEE
Q psy15224 292 V--QQFIQDNL 300 (502)
Q Consensus 292 ~--~~ig~G~i 300 (502)
+ |++|+|.|
T Consensus 400 ~~~~~~~~~~~ 410 (411)
T PRK04000 400 GRWRLIGYGII 410 (411)
T ss_pred CcEEEEEEEEe
Confidence 7 99999986
No 26
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-38 Score=307.22 Aligned_cols=271 Identities=27% Similarity=0.415 Sum_probs=233.4
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
|++|++.+|+|+||||+++|+++||.||+.++..+|+++.++|+||+|+++. ++.+...++ +++.+.+ .+.+++
T Consensus 67 miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~-~r~e~~i~~---Il~~l~l--~~~~i~ 140 (447)
T COG3276 67 LLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE-ARIEQKIKQ---ILADLSL--ANAKIF 140 (447)
T ss_pred HHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH-HHHHHHHHH---HHhhccc--cccccc
Confidence 7899999999999999999999999999999999999998888999999996 454544444 4444444 357889
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK 160 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~ 160 (502)
+.|+.+|. ++++|-+.|.+....+.++.+.||+++|++.|.++|.|+|++|+++||++++||++++.|.
T Consensus 141 ~~s~~~g~----------GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~- 209 (447)
T COG3276 141 KTSAKTGR----------GIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPI- 209 (447)
T ss_pred ccccccCC----------CHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecC-
Confidence 99999987 9999999998854346778899999999999999999999999999999999999999985
Q ss_pred CCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCCCcccccCCee
Q psy15224 161 DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240 (502)
Q Consensus 161 ~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~ 240 (502)
++.++|+|||.++.++++|.||++|+++|+|++.+++.||++|++++...+++.+.+.+.+...- +.++.+|+.+
T Consensus 210 -~k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~~~~v~~~~~~~~~i~~~~----~~~l~~~~~~ 284 (447)
T COG3276 210 -NKEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPLEVTTRLIVELEIDPLF----KKTLKQGQPV 284 (447)
T ss_pred -CCeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCCCCCcceEEEEEEEecccc----ccccCCCceE
Confidence 48999999999999999999999999999999999999999999988777778888888776432 3578999999
Q ss_pred EEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEeCC--eEEEEEEEeec
Q psy15224 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGV--QQFIQDNLLTK 303 (502)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~~--~~ig~G~i~~~ 303 (502)
++|+|...++|++...++. +.+.+.+|++...+++++||++. .+.+++.|+..
T Consensus 285 hi~~g~~~~~~~i~~l~~~----------~~l~~~k~i~~~~~~~l~lr~~~a~~~~~g~rvl~~ 339 (447)
T COG3276 285 HIHVGLRSVTGRIVPLEKN----------AELNLVKPIALGDNDRLVLRDNSAVIKLAGARVLSL 339 (447)
T ss_pred EEEEeccccceEeeecccc----------ceeeeecccccccCceEEEEcccceeeeccceEEec
Confidence 9999999999999754432 57888899999999999999764 56666676654
No 27
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=3.8e-37 Score=325.99 Aligned_cols=274 Identities=26% Similarity=0.417 Sum_probs=227.7
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
|++|++++|+++||||+++|+++||.+|+.++..+|+|++|+|+||||+++. +.++.+.+++.++++.+++.. ..|++
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~-~~~~~~~~ei~~~l~~~~~~~-~~~ii 144 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNE-EEIKRTEMFMKQILNSYIFLK-NAKIF 144 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCH-HHHHHHHHHHHHHHHHhCCCC-CCcEE
Confidence 5788999999999999999999999999999999999977788999999985 556666778888888776532 47899
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCCCC-CCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeec
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP-NRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGI 159 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~-~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~ 159 (502)
++||++|. ++.++.+.+.+.+... ....+.||+|+|+++|.++|.|+|++|+|.+|+|++||++.++|.
T Consensus 145 ~vSA~tG~----------GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~ 214 (581)
T TIGR00475 145 KTSAKTGQ----------GIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPI 214 (581)
T ss_pred EEeCCCCC----------CchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCC
Confidence 99999987 6666666655433211 112578999999999999999999999999999999999999985
Q ss_pred CCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCCCcccccCCe
Q psy15224 160 KDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYR 239 (502)
Q Consensus 160 ~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~ 239 (502)
+..++|++|+.++.++++|.||++|+++|+|++..++++|.+++++..+ ...+.+.+.. . .++..|+.
T Consensus 215 --~~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~--~~~~~~~~~~---~-----~~l~~~~~ 282 (581)
T TIGR00475 215 --NHEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDP--KLRVVVKFIA---E-----VPLLELQP 282 (581)
T ss_pred --CceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCC--CceEEEEEEc---C-----CccCCCCe
Confidence 4789999999999999999999999999999999999999888765432 2223333322 1 36889999
Q ss_pred eEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEeC-CeEEEEEEEeeceeecc
Q psy15224 240 PQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG-VQQFIQDNLLTKEIVNS 308 (502)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~-~~~ig~G~i~~~~~~~~ 308 (502)
+++|+|+.++.|++...+.. .+++.+.+|+++..|+||++|++ .+|+|+|.|+.+ +.+.
T Consensus 283 ~~~~~gt~~~~~~i~~l~~~---------~~~l~l~~P~~~~~gd~~i~r~~~~~tiggg~vl~~-~~~~ 342 (581)
T TIGR00475 283 YHIAHGMSVTTGKISLLDKG---------IALLTLDAPLILAKGDKLVLRDSSGNFLAGARVLEP-PVRV 342 (581)
T ss_pred EEEEEeceEEEEEEEEccCc---------EEEEEECCceecCCCCEEEEEeCCCEEEeeeEEecC-Cccc
Confidence 99999999999999866431 67899999999999999999994 499999999988 5444
No 28
>PRK05609 nusG transcription antitermination protein NusG; Validated
Probab=100.00 E-value=2e-37 Score=282.49 Aligned_cols=177 Identities=60% Similarity=1.092 Sum_probs=160.3
Q ss_pred ccccceEEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEEeCccceeee
Q psy15224 325 NNKKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLV 404 (502)
Q Consensus 325 ~~~~~WYvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i 404 (502)
+.+++||++||++|+|++++++|++++...|+++.++++|+|+++..++++|+++.+.+|||||||||++++.++.|..+
T Consensus 3 ~~~~~WYvl~~~~~~E~~v~~~L~~~~~~~~i~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i 82 (181)
T PRK05609 3 SMKKRWYVVQTYSGYEKKVKENLENRIETLGMEDLIGEVLVPTEEVVEVKNGKKKKVERKFFPGYVLVKMVMTDESWHLV 82 (181)
T ss_pred CCCCeEEEEEeECCcHHHHHHHHHHHHHHCCCcceeeEEEeeeEEEEEccCCEEEEEEEecCCcEEEEEEEeCccHhHHh
Confidence 45679999999999999999999998888888877789999999988889999999999999999999999888889999
Q ss_pred eccCCeeEecc-CCCCcceeCCHHHHHHHHHHHhcCCCCCCCccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEE
Q psy15224 405 KNTKKVTGFIG-GKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSV 483 (502)
Q Consensus 405 ~~~~~v~~~l~-~~~~~p~~v~~~ei~~~~~~~~~~~~~~~~~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v 483 (502)
++++|+.+|++ + ++.|++||++||+.|+..+.++.........+++||+|+|++|||+|++|.|.+++++++++.|.+
T Consensus 83 ~~~~gv~~~v~~~-g~~p~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~Gd~VrI~~GPf~G~~g~v~~i~~~~~r~~v~l 161 (181)
T PRK05609 83 RNTPGVTGFVGST-GSKPTPLSEKEVEKILKQLQEGVEKPKPKVDFEVGEMVRVIDGPFADFNGTVEEVDYEKSKLKVLV 161 (181)
T ss_pred hcCCCeEEEecCC-CCCcccCCHHHHHHHHHHhhcccccCccccCCCCCCEEEEeccCCCCCEEEEEEEeCCCCEEEEEE
Confidence 99999999998 5 779999999999999986654433333446799999999999999999999999998899999999
Q ss_pred EecCcceeEEeecCceEeC
Q psy15224 484 TIFGRATPVELEFNQVEKI 502 (502)
Q Consensus 484 ~~~g~~~~v~~~~~~v~~~ 502 (502)
++||+.+.|+++.++++++
T Consensus 162 ~~~G~~~~v~l~~~~l~~~ 180 (181)
T PRK05609 162 SIFGRETPVELEFSQVEKI 180 (181)
T ss_pred EECCCceEEEEchHHEEEc
Confidence 9999999999999999875
No 29
>TIGR00922 nusG transcription termination/antitermination factor NusG. Archaeal proteins once termed NusG share the KOW domain but are actually a ribosomal protein corresponding to L24p in bacterial and L26e in eukaryotes (TIGR00405).
Probab=100.00 E-value=2.8e-37 Score=278.78 Aligned_cols=171 Identities=54% Similarity=1.016 Sum_probs=155.6
Q ss_pred eEEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEEeCccceeeeeccCC
Q psy15224 330 WYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNTKK 409 (502)
Q Consensus 330 WYvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~~~ 409 (502)
||+++|++|+|++++++|++++.++|+++.++++|+|+.+..++++|+++.+.+|||||||||++++.++.|..+++++|
T Consensus 1 WYvl~~~~~~E~~v~~~L~~~~~~~g~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfPgYvFv~~~~~~~~~~~i~~~~g 80 (172)
T TIGR00922 1 WYVVQTYSGYEKKVKQNLEELIELLGMGDYIFEVIVPTEEVVEIKKGKKKVVERKIFPGYVLVKMDLTDVSWHLVKNTPG 80 (172)
T ss_pred CEEEEeECChHHHHHHHHHHHHHHCCCccceeEEEcceEEEEEEcCCEEEEEEEecCCcEEEEEEEeCccHhHHhhcCCC
Confidence 99999999999999999999888888877778999999998888999999999999999999999988889999999999
Q ss_pred eeEeccCCCCcceeCCH-HHHHHHHHHHhcCCCCCCCccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCc
Q psy15224 410 VTGFIGGKSNRPTPISS-KEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGR 488 (502)
Q Consensus 410 v~~~l~~~~~~p~~v~~-~ei~~~~~~~~~~~~~~~~~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~ 488 (502)
|.+|+++ +++|.+||+ +||+.|+..+.++.........+++|++|+|++|||+|++|.|.+++++++++.|.+++||+
T Consensus 81 v~~~v~~-~~~p~~I~~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~G~~g~v~~~~~~~~r~~V~v~~~g~ 159 (172)
T TIGR00922 81 VTGFVGS-GGKPKALSEDEEVKNILNALEEGKDKPKPKIDFEVGEQVRVNDGPFANFTGTVEEVDYEKSKLKVSVSIFGR 159 (172)
T ss_pred ccEEcCc-CCeeeccCCHHHHHHHHHHhhcccccCccccCCCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEECCC
Confidence 9999987 789999999 99999998776543222234568999999999999999999999999888899999999999
Q ss_pred ceeEEeecCceEe
Q psy15224 489 ATPVELEFNQVEK 501 (502)
Q Consensus 489 ~~~v~~~~~~v~~ 501 (502)
.+.|+++.++|++
T Consensus 160 ~~~v~v~~~~l~~ 172 (172)
T TIGR00922 160 ETPVELEFSQVEK 172 (172)
T ss_pred ceEEEEcHHHeeC
Confidence 9999999999975
No 30
>KOG0463|consensus
Probab=100.00 E-value=8.6e-37 Score=288.14 Aligned_cols=282 Identities=23% Similarity=0.328 Sum_probs=243.3
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcC---------------
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE--------------- 71 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~--------------- 71 (502)
.-|+.+|+|.|+.|+-+.|+|||.++.++.+|.++| +||+|+|.. +.+++....+..+++.-|
T Consensus 244 ~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvV-VTKIDMCPA-NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv 321 (641)
T KOG0463|consen 244 MPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVV-VTKIDMCPA-NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVV 321 (641)
T ss_pred CCCceEEEecccccceeccHHhhhhhhhhcCcEEEE-EEeeccCcH-HHHHHHHHHHHHHhcCCCcccCcEEEecccceE
Confidence 369999999999999999999999999999998887 999999996 777777777777877643
Q ss_pred -----CCCC-CCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCC-CCCCCCeeEEEeEEEeeCCCeEEEEEEEE
Q psy15224 72 -----FPGN-DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN-RAIDGAFLLPVEDVFSISGRGTVVTGRVE 144 (502)
Q Consensus 72 -----~~~~-~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~-~~~~~p~~~~v~~~~~~~~~G~v~~g~v~ 144 (502)
|..+ -.|++-+|..+|. ++ .||..+.+.++... ...+.|..|.|+++|.++|+|+++.|++.
T Consensus 322 ~~A~NF~Ser~CPIFQvSNVtG~----------NL-~LLkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L 390 (641)
T KOG0463|consen 322 HAAVNFPSERVCPIFQVSNVTGT----------NL-PLLKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLL 390 (641)
T ss_pred EeeccCccccccceEEeccccCC----------Ch-HHHHHHHhhcCcccccccCCCcceeecceEecCCcceEeeccee
Confidence 3322 3466777777765 43 46677766665432 34567899999999999999999999999
Q ss_pred EeeeecCCEEEEeecCCC--eeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCC-CCcccEEEEEEE
Q psy15224 145 RGIVRVGEELEIIGIKDT--VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS-IKPHKHFTGEIY 221 (502)
Q Consensus 145 sG~l~~gd~v~i~p~~~~--~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f~a~v~ 221 (502)
+|+|+.+|.+.++|...+ .+..|+||++.+-++..+..|+.+.++|+.++..++++|+|+.+++- |..++.|+|+|.
T Consensus 391 ~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEIL 470 (641)
T KOG0463|consen 391 SGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEIL 470 (641)
T ss_pred eeeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEeccchhhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeEE
Confidence 999999999999987544 57789999999999999999999999999999999999999999875 677899999999
Q ss_pred EeecCCCCCCcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeC-ceEecccCCeEEEEeCCeEEEEEEE
Q psy15224 222 ALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLI-NPIAMEEGLRFAIREGVQQFIQDNL 300 (502)
Q Consensus 222 ~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~-~pi~~~~~~r~ilr~~~~~ig~G~i 300 (502)
+|+|| +.|.+.|+.++|||++++++++. ..+..+++.||.+.|+|+|. +|+++++++|+++|++ ||.|+|.|
T Consensus 471 VLHHP-----TTIsprYQAMvHcGSiRQTAtiv-sM~kdcLRTGDka~V~FrFIkqPEYir~gqrlVFREG-RTKAVGti 543 (641)
T KOG0463|consen 471 VLHHP-----TTISPRYQAMVHCGSIRQTATIV-SMGKDCLRTGDKAKVQFRFIKQPEYIRPGQRLVFREG-RTKAVGTI 543 (641)
T ss_pred EEecC-----CccCcchhheeeeccccceeeee-ecChhhhhcCCcceEEEEEecCcceecCCceEEeecc-cceeeeee
Confidence 99997 78999999999999999999996 45668999999999999997 8999999999999977 99999999
Q ss_pred eeceeecc
Q psy15224 301 LTKEIVNS 308 (502)
Q Consensus 301 ~~~~~~~~ 308 (502)
..+++..+
T Consensus 544 ~~~lp~~~ 551 (641)
T KOG0463|consen 544 SSVLPQES 551 (641)
T ss_pred cccccccc
Confidence 98766543
No 31
>COG0250 NusG Transcription antiterminator [Transcription]
Probab=100.00 E-value=1.6e-36 Score=269.17 Aligned_cols=176 Identities=51% Similarity=0.935 Sum_probs=162.6
Q ss_pred ccceEEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEEeCccceeeeec
Q psy15224 327 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKN 406 (502)
Q Consensus 327 ~~~WYvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~ 406 (502)
+++||+++|.+|+|++|+++|+++....++++.+.++.+|.++....+++++..+.+++|||||||+++++++.|+.+++
T Consensus 2 ~~~Wyvv~~~sg~E~~V~~~l~~~~~~~~~~~~~~~v~vp~E~v~e~~~~~~~~~e~~~fpGYVlVem~~~~~~w~~Vr~ 81 (178)
T COG0250 2 MKRWYVVQTYSGQEKKVKENLERKAELLGMEDLIFEVLVPTEEVVEVKGKRKVIVERKLFPGYVLVEMDMTDEAWHLVRN 81 (178)
T ss_pred CceEEEEEeeccHHHHHHHHHHHHHHhcCCccceeeEEeceEEEEEecCceEEEEecccCCcEEEEEEEcCCceEEEEec
Confidence 57899999999999999999999999999999999999999988888777777799999999999999999999999999
Q ss_pred cCCeeEeccCCCCcceeCCHHHHHHHHHHHhcCCCCCCCccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEec
Q psy15224 407 TKKVTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIF 486 (502)
Q Consensus 407 ~~~v~~~l~~~~~~p~~v~~~ei~~~~~~~~~~~~~~~~~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~ 486 (502)
+|||+||+++.+.+|.|++++|++.++...............|.+||.|+|++|||+||.|.|.++|.++++++|++.+|
T Consensus 82 tpgV~GfVg~~~~~P~pi~~~ei~~~l~~~~~~~~~~~~~~~~e~Gd~VrI~~GpFa~f~g~V~evd~ek~~~~v~v~if 161 (178)
T COG0250 82 TPGVTGFVGSGGAKPVPLSEEEIEHILGFLEEEVAPKKPKVDFEPGDVVRIIDGPFAGFKAKVEEVDEEKGKLKVEVSIF 161 (178)
T ss_pred CCCcEEEeccCCCCCcccCHHHHHHHHhhccccccCCcccccCCCCCEEEEeccCCCCccEEEEEEcCcCcEEEEEEEEe
Confidence 99999999975589999999999998777765444455567899999999999999999999999999999999999999
Q ss_pred CcceeEEeecCceEeC
Q psy15224 487 GRATPVELEFNQVEKI 502 (502)
Q Consensus 487 g~~~~v~~~~~~v~~~ 502 (502)
||.++|+++++|++++
T Consensus 162 gr~tPVel~~~qVek~ 177 (178)
T COG0250 162 GRPTPVELEFDQVEKL 177 (178)
T ss_pred CCceEEEEehhhEEEe
Confidence 9999999999999985
No 32
>KOG1143|consensus
Probab=100.00 E-value=5.2e-36 Score=282.68 Aligned_cols=284 Identities=21% Similarity=0.272 Sum_probs=247.4
Q ss_pred CCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCC--------------
Q psy15224 8 MDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP-------------- 73 (502)
Q Consensus 8 ~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~-------------- 73 (502)
-|+|+|||+|+.|+...|+|||.++.++++|.+++ ++|||+++. ..++.+..++..++++.|..
T Consensus 275 Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvl-vtK~Dl~~~-~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~ 352 (591)
T KOG1143|consen 275 PHFACLVVSADRGITWTTREHLGLIAALNIPFFVL-VTKMDLVDR-QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVK 352 (591)
T ss_pred CceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEE-EEeeccccc-hhHHHHHHHHHHHHhhcCccccceEeechHHHHH
Confidence 58999999999999999999999999999998888 999999996 55677778888888766622
Q ss_pred -------CCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCC------CCCCCeeEEEeEEEeeCCCeEEEE
Q psy15224 74 -------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR------AIDGAFLLPVEDVFSISGRGTVVT 140 (502)
Q Consensus 74 -------~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~------~~~~p~~~~v~~~~~~~~~G~v~~ 140 (502)
++-+|++.+|..+|. ++ .|+..+.+.+++... ....|..|.|+++|+++++|.|+.
T Consensus 353 Aaq~~~s~nivPif~vSsVsGe----------gl-~ll~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVG 421 (591)
T KOG1143|consen 353 AAQELCSGNIVPIFAVSSVSGE----------GL-RLLRTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVG 421 (591)
T ss_pred HHHHhccCCceeEEEEeecCcc----------ch-hHHHHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCccccccc
Confidence 234678888888775 44 466666666664322 234688899999999999999999
Q ss_pred EEEEEeeeecCCEEEEeecCCC--eeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCC-CCCcccEEE
Q psy15224 141 GRVERGIVRVGEELEIIGIKDT--VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG-SIKPHKHFT 217 (502)
Q Consensus 141 g~v~sG~l~~gd~v~i~p~~~~--~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~-~~~~~~~f~ 217 (502)
|.+.+|.++.|+.+.++|.+++ .+.+|.+|++++.++..+.||+.+.+.|..-+...+++|+++..++ +|+.+..|+
T Consensus 422 G~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~ 501 (591)
T KOG1143|consen 422 GMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEIDHNPPVCYEFT 501 (591)
T ss_pred ceeeeceeccCceeEeecCCCCceeEEEeeeeeccccceeeecCccceeeeccCCCccchhcceEEeecCCCCceEEEEe
Confidence 9999999999999999998765 5788999999999999999999999999866778899999999875 477789999
Q ss_pred EEEEEeecCCCCCCcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeC-ceEecccCCeEEEEeCCeEEE
Q psy15224 218 GEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLI-NPIAMEEGLRFAIREGVQQFI 296 (502)
Q Consensus 218 a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~-~pi~~~~~~r~ilr~~~~~ig 296 (502)
|++.+|-|. +.|..|++.++|+|++++++.|+.+.+..+++.|++|.|.|.|. +|+++.+|.+++||++ .|.|
T Consensus 502 A~~~lLfHa-----T~i~~GFQ~TVhiGsvrqTAvi~~I~~~d~lrtg~~AvV~f~F~~hPEyir~G~~ilfReG-~tKG 575 (591)
T KOG1143|consen 502 ANLLLLFHA-----TYICEGFQATVHIGSVRQTAVITHIDDADCLRTGKWAVVKFCFAYHPEYIREGSPILFREG-KTKG 575 (591)
T ss_pred eeehhhhhh-----HhheecceEEEEEcceeeeeeeeeecccccccCCceEEEEEEecCCchhccCCCeeeeecc-cccc
Confidence 999999985 78999999999999999999999999999999999999999987 9999999999999977 9999
Q ss_pred EEEEeeceeeccCc
Q psy15224 297 QDNLLTKEIVNSNK 310 (502)
Q Consensus 297 ~G~i~~~~~~~~~~ 310 (502)
.|.|+...+.+..-
T Consensus 576 iG~Vt~Vfp~t~~~ 589 (591)
T KOG1143|consen 576 IGEVTKVFPCTQTG 589 (591)
T ss_pred cceEEEEEeccccC
Confidence 99999887776543
No 33
>PRK09014 rfaH transcriptional activator RfaH; Provisional
Probab=100.00 E-value=4e-36 Score=268.15 Aligned_cols=161 Identities=17% Similarity=0.312 Sum_probs=143.5
Q ss_pred cceEEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEEeCccceeeeecc
Q psy15224 328 KRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNT 407 (502)
Q Consensus 328 ~~WYvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~ 407 (502)
.+||++||+||+|+++.++|++ .| +++|+|+++..++++|+++.+.+|||||||||++++.+..|..++++
T Consensus 2 ~~WYvl~t~~~~E~~v~~~L~~----~g-----i~~~~P~~~~~~~~~gk~~~v~~plFPgYlFv~~~~~~~~~~~i~~~ 72 (162)
T PRK09014 2 KSWYLLYCKRGQLQRAQEHLER----QG-----VECLYPMITLEKIVRGKRTEVSEPLFPNYLFVEFDPEVIHTTTIRST 72 (162)
T ss_pred ceEEEEEecCchHHHHHHHHHH----CC-----CEEECCCEEEEEEECCeEEEEEEEcCCCeEEEEeccccCceEEEEec
Confidence 5799999999999999999985 33 38999999988889999999999999999999999888888999999
Q ss_pred CCeeEeccCCCCcceeCCHHHHHHHHHHHhcCCCCCCCccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecC
Q psy15224 408 KKVTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFG 487 (502)
Q Consensus 408 ~~v~~~l~~~~~~p~~v~~~ei~~~~~~~~~~~~~~~~~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g 487 (502)
+||.+|+++ +++|++||+++|+.|+....+.. . ....+.+||+|+|++|||+|++|.|.+++ +++|+.|.+++||
T Consensus 73 ~gv~~~v~~-g~~p~~I~~~ei~~l~~~~~~~~--~-~~~~~~~G~~V~I~~Gp~~g~eg~v~~~~-~~~r~~v~v~~~g 147 (162)
T PRK09014 73 RGVSHFVRF-GAQPAIVPSDVIYQLSVYKPEKI--V-DPETPKPGDKVIITEGAFEGLQAIYTEPD-GEARSILLLNLLN 147 (162)
T ss_pred CCcceEecc-CCCccccCHHHHHHHHhhccccc--c-cccCCCCCCEEEEecCCCCCcEEEEEEeC-CCeEEEEeehhhC
Confidence 999999998 77999999999999997543211 1 22358999999999999999999999999 5779999999999
Q ss_pred cceeEEeecCceEeC
Q psy15224 488 RATPVELEFNQVEKI 502 (502)
Q Consensus 488 ~~~~v~~~~~~v~~~ 502 (502)
|.++|+++.++|+++
T Consensus 148 r~~~v~v~~~~~~~~ 162 (162)
T PRK09014 148 KQVKHSVDNTQFRKI 162 (162)
T ss_pred CcEEEEECHHHeecC
Confidence 999999999999985
No 34
>TIGR01955 RfaH transcriptional activator RfaH. This model represents the transcriptional activator protein, RfaH. This protein is most closely related to the transcriptional termination/antitermination protein NusG (TIGR00922) and contains the KOW motif (pfam00467). This protein appears to be limited to the gamma proteobacteria. In E. coli, this gene appears to control the expression of haemolysin, sex factor and lipopolysaccharide genes.
Probab=100.00 E-value=5e-35 Score=260.87 Aligned_cols=159 Identities=22% Similarity=0.439 Sum_probs=141.9
Q ss_pred eEEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEEeCccceeeeeccCC
Q psy15224 330 WYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNTKK 409 (502)
Q Consensus 330 WYvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~~~ 409 (502)
|||+||+||+|++++++|++ .| +++|+|+++..++++|+++.+.+|||||||||++++.++.|..+++++|
T Consensus 1 WYvl~~~~~~E~~v~~~L~~----~g-----i~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~~g 71 (159)
T TIGR01955 1 WYLLYCKPRQEQRAQEHLER----QA-----VECYLPMITVEKIVRGKRQAVSEPLFPNYLFIEFDPEVDSWTTIRSTRG 71 (159)
T ss_pred CEEEEEcCchHHHHHHHHHH----CC-----CEEEccCEEEEEEECCcEEEEEEecCCCeEEEEEccCCCceEEEecCCC
Confidence 99999999999999999985 23 4899999998888999999999999999999999988889999999999
Q ss_pred eeEeccCCCCcceeCCHHHHHHHHHHHhcCCCCCCCccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcc
Q psy15224 410 VTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRA 489 (502)
Q Consensus 410 v~~~l~~~~~~p~~v~~~ei~~~~~~~~~~~~~~~~~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~ 489 (502)
+.+|+++ +++|.+||+++|+.++....++. .......+.+||+|+|++|||+|++|.|.+++ +++|+.|.+++|||.
T Consensus 72 v~~~v~~-~~~p~~I~~~~i~~l~~~~~~~~-~~~~~~~~~~G~~V~V~~GPf~g~~g~v~~~~-~~~r~~v~l~~~gr~ 148 (159)
T TIGR01955 72 VSRFVRF-GGHPAPVPDDLIHQLRQYEPKDS-VPPATTLPYKGDKVRITDGAFAGFEAIFLEPD-GEKRSMLLLNMIGKQ 148 (159)
T ss_pred cCEEECC-CCCcccCCHHHHHHHHhcccccc-CCccccCCCCCCEEEEeccCCCCcEEEEEEEC-CCceEEEEEhhhCCc
Confidence 9999997 78999999999999987654332 22233468999999999999999999999998 577999999999999
Q ss_pred eeEEeecCceE
Q psy15224 490 TPVELEFNQVE 500 (502)
Q Consensus 490 ~~v~~~~~~v~ 500 (502)
++|+++.++|+
T Consensus 149 ~~v~~~~~~~~ 159 (159)
T TIGR01955 149 IKVSVPNTSVE 159 (159)
T ss_pred eEEEecHHHcC
Confidence 99999999875
No 35
>TIGR01956 NusG_myco NusG family protein. This model represents a family of Mycoplasma proteins orthologous to the bacterial transcription termination/antitermination factor NusG. These sequences from Mycoplasma are notably diverged (long branches in a Neighbor-joining phylogenetic tree) from the bacterial species. And although NusA and ribosomal protein S10 (NusE) appear to be present, NusB may be absent in Mycoplasmas calling into question whether these species have a functional Nus system including this family as a member.
Probab=100.00 E-value=1.9e-34 Score=264.60 Aligned_cols=172 Identities=28% Similarity=0.609 Sum_probs=149.2
Q ss_pred ceEEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEE-----eec--------------------Cc---EEE
Q psy15224 329 RWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVD-----VKK--------------------NQ---KSV 380 (502)
Q Consensus 329 ~WYvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~-----~~~--------------------g~---~~~ 380 (502)
+||+++|.+|+|.+|.+.|++++...|+++.++++.+|+++... .++ |+ ++.
T Consensus 1 kWYvv~t~sG~E~kV~~~l~~kv~~~~~ed~i~~v~Vp~e~~ve~~v~e~k~~~~p~~~k~~~~~~w~~~~~gk~~k~k~ 80 (258)
T TIGR01956 1 QWYIATTINGNEDEVIENIKAKVRALGLENYISDFKILKEREIEEKVFEPKNGQAPRSMKNTATTKWETLDETKYKKTKI 80 (258)
T ss_pred CeEEEEeeCCcHHHHHHHHHHHHHhCCCccEEEEEEEeeeEEEEEEEEEeecCcccccccccccccceeccCCccccEEE
Confidence 59999999999999999999999999999999999999987444 444 55 788
Q ss_pred EEecccCcEEEEEEEeCccceeeeeccCCeeEeccCC--CCcceeCCHHHH-HHHHHHHhcCCC----------------
Q psy15224 381 IKKRFFPGYVLIEMEMTDESWHLVKNTKKVTGFIGGK--SNRPTPISSKEI-EEILKQIKKGVE---------------- 441 (502)
Q Consensus 381 ~~~plfpgYvFv~~~~~~~~~~~i~~~~~v~~~l~~~--~~~p~~v~~~ei-~~~~~~~~~~~~---------------- 441 (502)
+.+++|||||||+|.|+++.|+.++++|||+||+|+. +.+|.||++++. +.|+........
T Consensus 81 ~er~~fPGYI~IkM~m~d~~W~~VRnt~gVTGFvGssg~g~kPiPls~~e~~~~ml~~~~~~~~~~~~~~~~~~~~~~~~ 160 (258)
T TIGR01956 81 SEKNKYNGYIYIKMIMTEDAWFLIRNTENVTGLVGSSGKGAKPIPISADADKLKMLKGISENTKKRVLVTNTAIVEMEEN 160 (258)
T ss_pred EEeeecCcEEEEEEEecccHhhheecCCCCCeecCCCCCCCCCcCCCHHHHHHHHhhhhhhccccccccccccccccccc
Confidence 9999999999999999999999999999999999962 347999999888 566655442111
Q ss_pred --------------------------------------CCCCccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEE
Q psy15224 442 --------------------------------------KPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSV 483 (502)
Q Consensus 442 --------------------------------------~~~~~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v 483 (502)
.......|.+||.|+|++|||+|++|.|.+++.+++|+.|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~VrI~dGPF~GfeG~I~eid~~k~Rv~VlV 240 (258)
T TIGR01956 161 KFDEKCQYILKHKQVKPEAIAQVSESGEIIDEIVEEFQLVDNLSKFRVGNFVKIVDGPFKGIVGKIKKIDQEKKKAIVEV 240 (258)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCCCCCCEEEEEecCCCCcEEEEEEEeCCCCEEEEEE
Confidence 011234589999999999999999999999998899999999
Q ss_pred EecCcceeEEeecCceE
Q psy15224 484 TIFGRATPVELEFNQVE 500 (502)
Q Consensus 484 ~~~g~~~~v~~~~~~v~ 500 (502)
++|||.++|+++++||+
T Consensus 241 ~IfGR~TpVeL~~~qVe 257 (258)
T TIGR01956 241 EILGKSVDVDLNFKHLK 257 (258)
T ss_pred EecCCcEEEEEchHHEE
Confidence 99999999999999986
No 36
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-32 Score=253.08 Aligned_cols=280 Identities=30% Similarity=0.444 Sum_probs=232.7
Q ss_pred CccccccCCEEEEEEECCC-CCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 1 MITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~-g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
|++|++..|.|+|||+|++ -+++||+|||..+...|++++|++-||+|+++.+... +--++|.+|++.. -.++.|+
T Consensus 103 MLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~Al-E~y~qIk~FvkGt--~Ae~aPI 179 (415)
T COG5257 103 MLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERAL-ENYEQIKEFVKGT--VAENAPI 179 (415)
T ss_pred HhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHH-HHHHHHHHHhccc--ccCCCce
Confidence 8999999999999999997 5889999999999999999999999999999974333 3345788888854 3468999
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCC--------CeEEEEEEEEEeeeecC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG--------RGTVVTGRVERGIVRVG 151 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~--------~G~v~~g~v~sG~l~~g 151 (502)
+|+||.++. +++.|+++|.+++|.|.++.+.|++|+|.+.|.++. .|-|+.|.+.+|.++.|
T Consensus 180 IPiSA~~~~----------NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vG 249 (415)
T COG5257 180 IPISAQHKA----------NIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVG 249 (415)
T ss_pred eeehhhhcc----------CHHHHHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecC
Confidence 999999988 899999999999999999999999999999999754 56689999999999999
Q ss_pred CEEEEeecC----CC------eeEEEEEEEEcceecceeecCCeEEEEec---CCCccCcccceEEeCCCCCCc-ccEEE
Q psy15224 152 EELEIIGIK----DT------VKTTCTGVEMFRKLLDQGQAGDNIGLLLR---GTKREDVERGQVLAKPGSIKP-HKHFT 217 (502)
Q Consensus 152 d~v~i~p~~----~~------~~~~V~~i~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~-~~~f~ 217 (502)
|++.+.|.- .+ ...+|.||+..+.++++|.+|..+++... .+...|--.|.|+..++.+++ ...|+
T Consensus 250 DEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G~pG~lPpv~~~~~ 329 (415)
T COG5257 250 DEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGTKLDPTLTKADALVGQVVGKPGTLPPVWTSIR 329 (415)
T ss_pred CeEEecCCeEeecCCceEEEEeeEEEEEEEeCCeeeeeccCCceEEEecccCcchhhhhhhccccccCCCCCCCceEEEE
Confidence 999999842 11 24678999999999999999999999532 234567778999998888544 57999
Q ss_pred EEEEEeecCCC----CCCcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEe---
Q psy15224 218 GEIYALSKDEG----GRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIRE--- 290 (502)
Q Consensus 218 a~v~~l~~~~~----~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~--- 290 (502)
.+..+|..--+ .+-.||..|...++.+|++..-+.+...++ | .+++.+.+|+|.+.|.|+.+..
T Consensus 330 ie~~LL~RvvG~~~e~kvepik~~E~Lml~VGtatT~GvV~~~k~-------d--~~ev~Lk~Pvcae~g~rvaisRri~ 400 (415)
T COG5257 330 IEYHLLERVVGTKEELKVEPIKTNEVLMLNVGTATTVGVVTSAKK-------D--EIEVKLKRPVCAEIGERVAISRRIG 400 (415)
T ss_pred EEeeehhhhhCcccccccccccCCCeEEEEeecceeEEEEEEecC-------c--eEEEEeccceecCCCCEEEEEeeec
Confidence 99998874311 123478999999999999888888875432 2 4789999999999999998832
Q ss_pred -CCeEEEEEEEee
Q psy15224 291 -GVQQFIQDNLLT 302 (502)
Q Consensus 291 -~~~~ig~G~i~~ 302 (502)
.+|.||+|.|.+
T Consensus 401 ~rWRLIG~G~ik~ 413 (415)
T COG5257 401 NRWRLIGYGTIKE 413 (415)
T ss_pred ceEEEEeEEEEec
Confidence 459999999853
No 37
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=99.95 E-value=1.9e-27 Score=208.42 Aligned_cols=143 Identities=27% Similarity=0.399 Sum_probs=124.5
Q ss_pred cccceEEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEEeCccceeeee
Q psy15224 326 NKKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVK 405 (502)
Q Consensus 326 ~~~~WYvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~ 405 (502)
.+++||++||++|+|+++++.|.+++.+.+++ ++++|+|.+ |||||||++++.++.|+.++
T Consensus 4 ~~~~WYvv~t~sG~E~~V~~~L~~~~~~~~~~--i~~i~vp~~-----------------fpGYVfVe~~~~~~~~~~i~ 64 (153)
T PRK08559 4 EMSMIFAVKTTAGQERNVALMLAMRAKKENLP--IYAILAPPE-----------------LKGYVLVEAESKGAVEEAIR 64 (153)
T ss_pred CCCcEEEEEeECChHHHHHHHHHHHHHhCCCc--EEEEEccCC-----------------CCcEEEEEEEChHHHHHHHh
Confidence 45679999999999999999999998887775 779999964 99999999999999999999
Q ss_pred ccCCeeEeccCCCCcceeCCHHHHHHHHHHHhcCCCCCCCccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEe
Q psy15224 406 NTKKVTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTI 485 (502)
Q Consensus 406 ~~~~v~~~l~~~~~~p~~v~~~ei~~~~~~~~~~~~~~~~~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~ 485 (502)
+++++.+|++. +++++|++.++.... ....|.+|+.|+|++|||+|++|.|.++|.++++ +.+++
T Consensus 65 ~v~~v~g~lg~------~l~~~Ei~~il~~~~-------~~~~~~~G~~V~I~~Gpf~g~~g~V~~vd~~k~~--v~v~l 129 (153)
T PRK08559 65 GIPHVRGVVPG------EISFEEVEHFLKPKP-------IVEGIKEGDIVELIAGPFKGEKARVVRVDESKEE--VTVEL 129 (153)
T ss_pred cCCCEeeeCCC------CCCHHHHHHHHhccC-------cccCCCCCCEEEEeccCCCCceEEEEEEcCCCCE--EEEEE
Confidence 99999999973 699999999884321 1245999999999999999999999999987655 77888
Q ss_pred cCccee--EEeecCceEeC
Q psy15224 486 FGRATP--VELEFNQVEKI 502 (502)
Q Consensus 486 ~g~~~~--v~~~~~~v~~~ 502 (502)
+|+.++ |+++.++|+.+
T Consensus 130 l~~~~~~pv~v~~~~~~~~ 148 (153)
T PRK08559 130 LEAAVPIPVTVRGDQVRVV 148 (153)
T ss_pred ECCcceeeEEEeccEEEEe
Confidence 998866 99999999763
No 38
>KOG0461|consensus
Probab=99.94 E-value=4.6e-26 Score=213.60 Aligned_cols=268 Identities=27% Similarity=0.421 Sum_probs=203.1
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh---HHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD---EELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~---~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
|.|+...|..+||||+.+|.+.||.|||.+...+-.+ +||++||+|...+ ...++.....+..-|+..+|.+ +.|
T Consensus 88 iggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~k-lvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g-~~P 165 (522)
T KOG0461|consen 88 IGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKK-LVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDG-NSP 165 (522)
T ss_pred HhhhheeeeeeEEEehhcccccccchhhhhhhhhccc-eEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCC-CCc
Confidence 6789999999999999999999999999988887755 5555999998775 3445666667777888888864 689
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEee
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIG 158 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p 158 (502)
++++||..|. +..+.+.+|.+.|.+.+-.|.++...||.|.|++.|.++|.|+|.+|+|.+|.++.|+.+.+..
T Consensus 166 I~~vsa~~G~------~~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PA 239 (522)
T KOG0461|consen 166 IVEVSAADGY------FKEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPA 239 (522)
T ss_pred eeEEecCCCc------cchhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecc
Confidence 9999999884 2224788999999988889999999999999999999999999999999999999999999743
Q ss_pred cCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCCCcccccCC
Q psy15224 159 IKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNY 238 (502)
Q Consensus 159 ~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~ 238 (502)
-+...+|+|+++++.++.+|.+||++++++...+..-+.|| +++.++.+.+....-+.+--+.-- ..++..-.
T Consensus 240 --L~e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klleRg-i~~~pg~Lk~~~avl~~vepI~yf----r~~i~sk~ 312 (522)
T KOG0461|consen 240 --LNEKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLERG-ICGPPGTLKSTKAVLATVEPIQYF----RKSINSKS 312 (522)
T ss_pred --cchhhhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHhcc-ccCCCcccceeeeeeEeecchHHH----hhhhhhcc
Confidence 34677899999999999999999999999987788888998 566666665554333333211100 01222222
Q ss_pred eeEEEeeeeeEEEEEEccC----------------------CCccccCCCEEEEEEEeCceEecccCC
Q psy15224 239 RPQFYFRTTDVTGSIELPK----------------------NKEMVMPGDNVLITVRLINPIAMEEGL 284 (502)
Q Consensus 239 ~~~~~~~~~~~~~~i~~~~----------------------~~~~~~~~~~~~v~~~~~~pi~~~~~~ 284 (502)
+.++-++.-.+.+.+...+ -+..+.+++...+-|+|++|+.+.++.
T Consensus 313 K~Hi~VgheTVMa~~~ff~d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~~aL~~FEkpv~~P~~s 380 (522)
T KOG0461|consen 313 KIHIAVGHETVMAECQFFKDTDGTTSTFQLDKEYENGEFDMLPALLAPCDVIQALFSFEKPVFLPEYS 380 (522)
T ss_pred eEEEEehhhhhhhheEEeeccCCcccccccchhhhccccccChhhcCCchheeeeeeecccccCcccc
Confidence 3333333333333333211 112355677788899999999888764
No 39
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.93 E-value=6.9e-25 Score=232.04 Aligned_cols=202 Identities=26% Similarity=0.367 Sum_probs=167.0
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCC--CCeE
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN--DIPI 79 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~--~~~i 79 (502)
..+++.+|+++|||||.+|+++||++|+..+...++|.+++ +||||+.+. .++++.+++.+++..++...+ .+|+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVv-iNKiD~~~a--~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVV-INKIDRPSA--RPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEE-EECCCCCCc--CHHHHHHHHHHHHHhhccccccccCcE
Confidence 35778999999999999999999999999999999997655 999999753 345566778888876665432 4799
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeec
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGI 159 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~ 159 (502)
+++||++|.+..+.-..+.++..|++.+.+.+|+|..+.+.||+++|++++.+++.|++++|||++|+|++||.|.+.|.
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~ 238 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKR 238 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecC
Confidence 99999998753322112347889999999999998877889999999999999999999999999999999999999875
Q ss_pred CC-CeeEEEEEEEEc----ceecceeecCCeEEEEecCCCccCcccceEEeCCCCC
Q psy15224 160 KD-TVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 210 (502)
Q Consensus 160 ~~-~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 210 (502)
+. ....+|++|+.+ +.++++|.|||+|++ .| ..++.+|++||+++.+
T Consensus 239 ~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i--~g--l~~i~~Gdtl~~~~~~ 290 (594)
T TIGR01394 239 DGTIENGRISKLLGFEGLERVEIDEAGAGDIVAV--AG--LEDINIGETIADPEVP 290 (594)
T ss_pred CCceeEEEEEEEEEccCCCceECCEECCCCEEEE--eC--CcccCCCCEEeCCCcc
Confidence 32 235789999976 468999999999998 45 3678999999987653
No 40
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=99.93 E-value=2e-25 Score=195.19 Aligned_cols=140 Identities=27% Similarity=0.405 Sum_probs=121.1
Q ss_pred EEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEEeCccceeeeeccCCe
Q psy15224 331 YVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNTKKV 410 (502)
Q Consensus 331 Yvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~~~v 410 (502)
|+++|++|+|+++++.|++++.+.+++ ++++++|. +|||||||++++.++.|+.+++++|+
T Consensus 1 Yvv~t~~g~E~~v~~~L~~~~~~~~~~--~~~~~vp~-----------------~fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 1 FAVKTSVGQEKNVARLMARKARKSGLE--VYSILAPE-----------------SLKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CeEEeeCChHHHHHHHHHHHHhhCCCc--EEEEEccC-----------------CCCcEEEEEEECcHHHHHHHhCCCCE
Confidence 899999999999999999998877765 44556663 49999999999888899999999999
Q ss_pred eEeccCCCCcceeCCHHHHHHHHHHHhcCCCCCCCccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcce
Q psy15224 411 TGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRAT 490 (502)
Q Consensus 411 ~~~l~~~~~~p~~v~~~ei~~~~~~~~~~~~~~~~~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~ 490 (502)
.+|++. +||++|++.++.. .. . ...+.+||+|+|++|||+|++|.|.+++.+++++.|.+..+++.+
T Consensus 62 ~~~v~~------~i~~~ei~~l~~~--~~--~---~~~~~~Gd~V~I~~GPf~G~~g~v~~~d~~k~~v~v~l~~~~~~~ 128 (145)
T TIGR00405 62 RGVVEG------EIDFEEIERFLTP--KK--I---IESIKKGDIVEIISGPFKGERAKVIRVDESKEEVTLELIEAAVPI 128 (145)
T ss_pred EeecCC------CCCHHHHHHHhcc--cc--c---ccccCCCCEEEEeecCCCCCeEEEEEEcCCCCEEEEEEEEcCccc
Confidence 999963 5999999988742 11 1 124899999999999999999999999998888888888899888
Q ss_pred eEEeecCceEeC
Q psy15224 491 PVELEFNQVEKI 502 (502)
Q Consensus 491 ~v~~~~~~v~~~ 502 (502)
+|+++.++|+++
T Consensus 129 ~v~v~~~~l~~~ 140 (145)
T TIGR00405 129 PVTVKGDQVRII 140 (145)
T ss_pred eEEEeeeEEEEe
Confidence 899999999874
No 41
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.92 E-value=1.2e-23 Score=204.91 Aligned_cols=200 Identities=26% Similarity=0.365 Sum_probs=169.6
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCC--CCeEEE
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN--DIPIIK 81 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~--~~~ii~ 81 (502)
.++..|.++|+|||.+|++|||+..+..+.++|++.|+| |||+|+.+. +-+++.++..++|-.++...+ ++|+++
T Consensus 88 vl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVV-vNKiDrp~A--rp~~Vvd~vfDLf~~L~A~deQLdFPivY 164 (603)
T COG1217 88 VLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVV-INKIDRPDA--RPDEVVDEVFDLFVELGATDEQLDFPIVY 164 (603)
T ss_pred hhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEE-EeCCCCCCC--CHHHHHHHHHHHHHHhCCChhhCCCcEEE
Confidence 467899999999999999999999999999999998877 999999874 446778889999988886654 689999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD 161 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~ 161 (502)
.||..|+...++-.....+..|++.|.++.|.|..+.+.||.|.|...-..++.|++..|||++|++++|+.|.+...++
T Consensus 165 AS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g 244 (603)
T COG1217 165 ASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDG 244 (603)
T ss_pred eeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcCCC
Confidence 99999875443322234678899999999999999999999999999988899999999999999999999999885322
Q ss_pred -CeeEEEEEEEEcc----eecceeecCCeEEEEecCCCccCcccceEEeCCCCC
Q psy15224 162 -TVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 210 (502)
Q Consensus 162 -~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 210 (502)
....+|..+..+. .++++|.|||+|++ +|+ .++..|+++|+++.+
T Consensus 245 ~~~~gri~kllgf~GL~R~ei~eA~AGDIVai--aG~--~~~~igdTi~d~~~~ 294 (603)
T COG1217 245 TTENGRITKLLGFLGLERIEIEEAEAGDIVAI--AGL--EDINIGDTICDPDNP 294 (603)
T ss_pred cEEeeEEEeeeeccceeeeecccccccCEEEE--cCc--ccccccccccCCCCc
Confidence 2467888887764 58999999999999 764 567789999998764
No 42
>PRK10218 GTP-binding protein; Provisional
Probab=99.91 E-value=2e-23 Score=220.62 Aligned_cols=200 Identities=26% Similarity=0.335 Sum_probs=162.5
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCC--CCCeEE
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG--NDIPII 80 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~--~~~~ii 80 (502)
.+++.+|++|||+||.+|++.||+.|+..+..+++|.+++ +||||+.+. .++.+.+++.+++..++... ..+|++
T Consensus 87 ~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVv-iNKiD~~~a--~~~~vl~ei~~l~~~l~~~~~~~~~PVi 163 (607)
T PRK10218 87 RVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVV-INKVDRPGA--RPDWVVDQVFDLFVNLDATDEQLDFPIV 163 (607)
T ss_pred HHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEE-EECcCCCCC--chhHHHHHHHHHHhccCccccccCCCEE
Confidence 4578899999999999999999999999999999997665 999999753 34556667777776655432 258999
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK 160 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~ 160 (502)
++||++|++....-....++..|++.+.+++|+|....+.||+++|++++.+++.|++++|||++|+|+.||.|.+.+..
T Consensus 164 ~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~ 243 (607)
T PRK10218 164 YASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSE 243 (607)
T ss_pred EeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCC
Confidence 99999998532211111367899999999999998788899999999999999999999999999999999999987642
Q ss_pred CC-eeEEEEEEEEc----ceecceeecCCeEEEEecCCCccCcccceEEeCCCC
Q psy15224 161 DT-VKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 209 (502)
Q Consensus 161 ~~-~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 209 (502)
+. ...+|.+|+.+ +.++++|.|||+|++ .| ..++..|++|++++.
T Consensus 244 ~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~g--l~~~~~GdTl~~~~~ 293 (607)
T PRK10218 244 GKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI--TG--LGELNISDTVCDTQN 293 (607)
T ss_pred CcEeeEEEEEEEEEecCCceECCEEcCCCEEEE--EC--ccccccCcEEecCCC
Confidence 21 25778888766 468999999999998 54 467889999997764
No 43
>KOG0466|consensus
Probab=99.90 E-value=4e-24 Score=197.55 Aligned_cols=280 Identities=23% Similarity=0.329 Sum_probs=218.0
Q ss_pred CccccccCCEEEEEEECCC-CCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 1 MITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~-g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
|+.|++..|+|+|+|.+++ -+++||.|||.....+.++++++.-||+|+..++. ..+.-+++..|++... .+..|+
T Consensus 142 MLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~-A~eq~e~I~kFi~~t~--ae~aPi 218 (466)
T KOG0466|consen 142 MLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQ-ALEQHEQIQKFIQGTV--AEGAPI 218 (466)
T ss_pred HhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHH-HHHHHHHHHHHHhccc--cCCCce
Confidence 8899999999999999997 58899999999999999999999999999998633 3334456777887543 356899
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCC--------CeEEEEEEEEEeeeecC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG--------RGTVVTGRVERGIVRVG 151 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~--------~G~v~~g~v~sG~l~~g 151 (502)
+|+||.-+. +++.+.+++.+.+|.|.++...|+++.|-+.|.+.. .|-++.|.+..|.|++|
T Consensus 219 iPisAQlky----------NId~v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg 288 (466)
T KOG0466|consen 219 IPISAQLKY----------NIDVVCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVG 288 (466)
T ss_pred eeehhhhcc----------ChHHHHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcC
Confidence 999998876 788999999999999999999999999999998643 56689999999999999
Q ss_pred CEEEEeecC----CCee-------EEEEEEEEcceecceeecCCeEEEEec---CCCccCcccceEEeCCCCCCc-ccEE
Q psy15224 152 EELEIIGIK----DTVK-------TTCTGVEMFRKLLDQGQAGDNIGLLLR---GTKREDVERGQVLAKPGSIKP-HKHF 216 (502)
Q Consensus 152 d~v~i~p~~----~~~~-------~~V~~i~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~-~~~f 216 (502)
|++.+.|.- .... .+|.|++..+.+++.|.+|..+++..+ .+...|--.|.++...+.++. ...+
T Consensus 289 ~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~~DPtlcraDrlVGqVlG~~G~LP~if~el 368 (466)
T KOG0466|consen 289 QEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTKMDPTLCRADRLVGQVLGAVGTLPDIFTEL 368 (466)
T ss_pred cEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccccCcchhhhhHHHHHHHhhccCCccceeEE
Confidence 999998741 1111 345566666778999999999999543 122344456777777776443 4677
Q ss_pred EEEEEEeecCCC---------CCCcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEE
Q psy15224 217 TGEIYALSKDEG---------GRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFA 287 (502)
Q Consensus 217 ~a~v~~l~~~~~---------~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~i 287 (502)
+...++|....+ .+...+.+|...++.+|+...-+++...+. | .+++.+..|+|.+.|.++.
T Consensus 369 ei~y~Llrrllgvrt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~vk~-------d--~~k~~Lt~P~CteigEkiA 439 (466)
T KOG0466|consen 369 EISYFLLRRLLGVRTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAVKA-------D--MAKIQLTSPVCTEIGEKIA 439 (466)
T ss_pred EeehhhhhHHhccccccccccchhhhcccCcEEEEEecccccCceEEEEec-------c--eeeeEecCchhcccchhhh
Confidence 777777654311 112457788888899998887777764432 3 4689999999999999998
Q ss_pred EE----eCCeEEEEEEEee
Q psy15224 288 IR----EGVQQFIQDNLLT 302 (502)
Q Consensus 288 lr----~~~~~ig~G~i~~ 302 (502)
+. ..+|.||+|.|..
T Consensus 440 lSRrvekhWRLIGwg~I~~ 458 (466)
T KOG0466|consen 440 LSRRVEKHWRLIGWGQIKA 458 (466)
T ss_pred hhhhhhhheEEecceeEeC
Confidence 73 3579999999853
No 44
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=99.88 E-value=1.8e-22 Score=167.33 Aligned_cols=105 Identities=41% Similarity=0.883 Sum_probs=96.0
Q ss_pred ceEEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEEeCccceeeeeccC
Q psy15224 329 RWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNTK 408 (502)
Q Consensus 329 ~WYvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~~ 408 (502)
+||+++|++|+|+++++.|+++....+.+..++++|+|++...+.++|+++.+.+|||||||||++++++..|..+++++
T Consensus 1 ~Wyvv~~~~g~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpGYvFv~~~~~~~~~~~i~~~~ 80 (106)
T smart00738 1 NWYAVRTTSGQEKRVAENLERKAEALGLEDKIVSILVPTEEVKEIRRGKKKVVERPLFPGYIFVEADLEDEVWTAIRGTP 80 (106)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHhcCCccccCEEEeeEEEEEEecCCEEEEEEEecCCCEEEEEEEeCCcHHHHHhcCC
Confidence 59999999999999999999987777666657799999988887899999999999999999999999888899999999
Q ss_pred CeeEeccCCCCcceeCCHHHHHHHHH
Q psy15224 409 KVTGFIGGKSNRPTPISSKEIEEILK 434 (502)
Q Consensus 409 ~v~~~l~~~~~~p~~v~~~ei~~~~~ 434 (502)
|+.+|+++ +++|.+||++||+.|++
T Consensus 81 ~v~~~v~~-~~~p~~v~~~e~~~l~~ 105 (106)
T smart00738 81 GVRGFVGG-GGKPTPVPDDEIEKILK 105 (106)
T ss_pred CccEECCC-CCeeeECCHHHHHHHhh
Confidence 99999997 78999999999998864
No 45
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=2e-21 Score=206.27 Aligned_cols=186 Identities=26% Similarity=0.360 Sum_probs=152.7
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
.+++.||++|||+|+++|++.||.+++..+...++|.++ ++||+|+.+.. .+...+++.+.+ ++. ..+++++
T Consensus 89 ~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIi-ViNKiDl~~~~--~~~~~~el~~~l---g~~--~~~vi~v 160 (595)
T TIGR01393 89 RSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIP-VINKIDLPSAD--PERVKKEIEEVI---GLD--ASEAILA 160 (595)
T ss_pred HHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEE-EEECcCCCccC--HHHHHHHHHHHh---CCC--cceEEEe
Confidence 457789999999999999999999999888888998555 59999997531 122333444433 332 1358999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDT 162 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~ 162 (502)
||++|. ++.+|++.|.+.+|+|..+.+.|++++|++++.+++.|++++|||++|+|++||+|.+.|. +
T Consensus 161 SAktG~----------GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~--~ 228 (595)
T TIGR01393 161 SAKTGI----------GIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMST--G 228 (595)
T ss_pred eccCCC----------CHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecC--C
Confidence 999998 8999999999999998888899999999999999999999999999999999999999874 4
Q ss_pred eeEEEEEEEEcc---eecceeecCCeEEEEecCCC-ccCcccceEEeCCCC
Q psy15224 163 VKTTCTGVEMFR---KLLDQGQAGDNIGLLLRGTK-REDVERGQVLAKPGS 209 (502)
Q Consensus 163 ~~~~V~~i~~~~---~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~~ 209 (502)
...+|.+|..++ .+++++.||| +++.+.|++ ..+++.||+|++.+.
T Consensus 229 ~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdtl~~~~~ 278 (595)
T TIGR01393 229 KEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDTITHVKN 278 (595)
T ss_pred CeeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCEEECCCC
Confidence 678899998776 6789999999 555556653 478999999997754
No 46
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.87 E-value=4.8e-21 Score=203.67 Aligned_cols=186 Identities=25% Similarity=0.324 Sum_probs=152.0
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
.+++.||++|||||+++|+..||.+++..+...++|.++ ++||+|+.+. . ++.+.+++.+.+ ++. ..+++++
T Consensus 93 ~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIv-ViNKiDl~~a-~-~~~v~~ei~~~l---g~~--~~~vi~i 164 (600)
T PRK05433 93 RSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIP-VLNKIDLPAA-D-PERVKQEIEDVI---GID--ASDAVLV 164 (600)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE-EEECCCCCcc-c-HHHHHHHHHHHh---CCC--cceEEEE
Confidence 457789999999999999999999999999889999554 5999999753 1 223334444433 432 2358999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDT 162 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~ 162 (502)
||++|. ++.+|++.|.+.+|+|....+.|++++|++++.+++.|++++|||++|+|++||+|++.|. +
T Consensus 165 SAktG~----------GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~--~ 232 (600)
T PRK05433 165 SAKTGI----------GIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMST--G 232 (600)
T ss_pred ecCCCC----------CHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecC--C
Confidence 999998 8999999999999998888899999999999999999999999999999999999999874 4
Q ss_pred eeEEEEEEEEc---ceecceeecCCeEEEEecCCC-ccCcccceEEeCCCC
Q psy15224 163 VKTTCTGVEMF---RKLLDQGQAGDNIGLLLRGTK-REDVERGQVLAKPGS 209 (502)
Q Consensus 163 ~~~~V~~i~~~---~~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~~ 209 (502)
...+|.+|..+ ..+++++.|||++.+ +.+++ ..+++.||+|++.+.
T Consensus 233 ~~~~V~~i~~~~~~~~~v~~~~aGdIg~i-~~~ik~~~~~~~Gdtl~~~~~ 282 (600)
T PRK05433 233 KEYEVDEVGVFTPKMVPVDELSAGEVGYI-IAGIKDVRDARVGDTITLAKN 282 (600)
T ss_pred ceEEEEEeeccCCCceECcEEcCCCEEEE-ecccccccccCCCCEEECCCC
Confidence 66788888865 368999999995554 44543 468999999997764
No 47
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=3.1e-21 Score=188.67 Aligned_cols=242 Identities=22% Similarity=0.271 Sum_probs=184.6
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
.+++.|..|+|||||..|+..||....+++...++..+-| +||+|+...+ -+.++.++.+.+ |... ...+.+
T Consensus 95 RSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPV-iNKIDLP~Ad--pervk~eIe~~i---Gid~--~dav~~ 166 (603)
T COG0481 95 RSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPV-LNKIDLPAAD--PERVKQEIEDII---GIDA--SDAVLV 166 (603)
T ss_pred hhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEe-eecccCCCCC--HHHHHHHHHHHh---CCCc--chheeE
Confidence 3678899999999999999999999999999999985555 9999998751 234556677666 6653 347789
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDT 162 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~ 162 (502)
||++|. +++++|+++.+.+|+|..+.++|++..+++.+.+++.|.++..||..|++++||++.+... +
T Consensus 167 SAKtG~----------gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~t--g 234 (603)
T COG0481 167 SAKTGI----------GIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMST--G 234 (603)
T ss_pred ecccCC----------CHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEec--C
Confidence 999998 9999999999999999999999999999999999999999999999999999999999853 4
Q ss_pred eeEEEEEEEEcc---eecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCCCcccccCCe
Q psy15224 163 VKTTCTGVEMFR---KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYR 239 (502)
Q Consensus 163 ~~~~V~~i~~~~---~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~ 239 (502)
....|..+-.+. .+.++..||+...+...--+..+.+.||++...++|.. ..++||+
T Consensus 235 ~~y~V~evGvftP~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~--------------------e~LpGfk 294 (603)
T COG0481 235 KEYEVDEVGIFTPKMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPAT--------------------EPLPGFK 294 (603)
T ss_pred CEEEEEEEeeccCCccccccccCCceeEEEEeeeecccCcccceEeccCCCcc--------------------ccCCCCC
Confidence 566676655543 56788999998777543224678899999986554321 1223444
Q ss_pred ---eEEEeeeeeEEEE--EEccCCCccccCCCEEEEEEEeCceEecccCCe
Q psy15224 240 ---PQFYFRTTDVTGS--IELPKNKEMVMPGDNVLITVRLINPIAMEEGLR 285 (502)
Q Consensus 240 ---~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r 285 (502)
|++|+|-.-+.+. -.+.++...+.-||. ..+++.+...++-.|-|
T Consensus 295 ~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDa-sl~~E~EtS~ALGfGfR 344 (603)
T COG0481 295 EVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDA-SLTYEPETSQALGFGFR 344 (603)
T ss_pred cCCceEEEeecccChhHHHHHHHHHHhcccccc-eeeeccccchhccCcee
Confidence 6888874322210 011223345677775 47888888888887755
No 48
>KOG0462|consensus
Probab=99.86 E-value=6.5e-21 Score=189.50 Aligned_cols=186 Identities=27% Similarity=0.325 Sum_probs=148.7
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
.++.||.|||||||.+|+++||...+.+|...|+..|.| +||+|+... .-+.++.++.++| ++. ..+++.+|
T Consensus 145 slaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpV-lNKIDlp~a--dpe~V~~q~~~lF---~~~--~~~~i~vS 216 (650)
T KOG0462|consen 145 SLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPV-LNKIDLPSA--DPERVENQLFELF---DIP--PAEVIYVS 216 (650)
T ss_pred hhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEe-eeccCCCCC--CHHHHHHHHHHHh---cCC--ccceEEEE
Confidence 578899999999999999999999999999999985555 999999874 2245556666666 333 24799999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCe
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTV 163 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~ 163 (502)
|++|. ++.++|+++.+.+|+|....++|||+.+++.+.+.+.|.+++++|..|.+++||+|..+.+....
T Consensus 217 AK~G~----------~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~y 286 (650)
T KOG0462|consen 217 AKTGL----------NVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSY 286 (650)
T ss_pred eccCc----------cHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcce
Confidence 99998 88999999999999999999999999999999999999999999999999999999988544334
Q ss_pred eEEEEEEEEcc-eecceeecCCeEEEEecCC-CccCcccceEEeCCC
Q psy15224 164 KTTCTGVEMFR-KLLDQGQAGDNIGLLLRGT-KREDVERGQVLAKPG 208 (502)
Q Consensus 164 ~~~V~~i~~~~-~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~ 208 (502)
.+++.++.... .++....||+..-|.. ++ +..+.+.|+++++..
T Consensus 287 ev~~vgvm~p~~~~~~~l~agqvGyIi~-~mr~~~ea~IGdTi~~~~ 332 (650)
T KOG0462|consen 287 EVKVVGVMRPEMTPVVELDAGQVGYIIC-NMRNVKEAQIGDTIAHKS 332 (650)
T ss_pred EeEEeEEeccCceeeeeecccccceeEe-cccccccccccceeeecc
Confidence 45555555443 3555555555444432 22 357788899998765
No 49
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.81 E-value=2e-18 Score=182.58 Aligned_cols=180 Identities=26% Similarity=0.266 Sum_probs=139.3
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCC----CCCCe
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP----GNDIP 78 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~----~~~~~ 78 (502)
.|++.+|+++||+|+++|..+||.+|+..+...++| +|+++||+|+.+.. .+.+..++ ...++. ....+
T Consensus 154 rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~--~e~v~~~L----~~~g~~~~~~~~~~~ 226 (587)
T TIGR00487 154 RGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDKPEAN--PDRVKQEL----SEYGLVPEDWGGDTI 226 (587)
T ss_pred hhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcccccCC--HHHHHHHH----HHhhhhHHhcCCCce
Confidence 578899999999999999999999999999999999 55559999996531 12222222 222221 12468
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhc--CCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEE
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTY--IPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEI 156 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~--~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i 156 (502)
++|+||++|. ++.+|++.+... ++......+.|++++|.+++.++|.|++++|+|.+|+|++||.+.+
T Consensus 227 ~v~iSAktGe----------GI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~ 296 (587)
T TIGR00487 227 FVPVSALTGD----------GIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVV 296 (587)
T ss_pred EEEEECCCCC----------ChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEE
Confidence 9999999997 888888887532 2223334568999999999999999999999999999999999998
Q ss_pred eecCCCeeEEEEEEEE-cceecceeecCCeEEEEecCCCccCcccceEEeC
Q psy15224 157 IGIKDTVKTTCTGVEM-FRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAK 206 (502)
Q Consensus 157 ~p~~~~~~~~V~~i~~-~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 206 (502)
+|. ..+|++++. ++..+++|.||+.|.+ .|++. --..|+.+.-
T Consensus 297 ~~~----~~kVr~l~~~~g~~v~~a~~g~~v~i--~Gl~~-~p~aGd~~~~ 340 (587)
T TIGR00487 297 GAA----YGRVRAMIDENGKSVKEAGPSKPVEI--LGLSD-VPAAGDEFIV 340 (587)
T ss_pred CCC----ccEEEEEECCCCCCCCEECCCCEEEE--eCCCC-CCCCCCEEEE
Confidence 763 468999998 5578999999999988 45442 2267888863
No 50
>PF02357 NusG: Transcription termination factor nusG; InterPro: IPR006645 This sequence is identified by the NGN domain and is represented by the bacterial antitermination protein NusG. This protein influences transcription termination and anti-termination and acts as a component of the transcription complex. In addition to this, it interacts with the termination factor Rho and RNA polymerase [, ].; GO: 0032968 positive regulation of transcription elongation from RNA polymerase II promoter; PDB: 1NZ8_A 2OUG_C 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2XHA_A 2XHC_A 2K06_A.
Probab=99.81 E-value=2e-20 Score=150.63 Aligned_cols=89 Identities=30% Similarity=0.712 Sum_probs=71.5
Q ss_pred cceEEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEee--cC-cEEEEEecccCcEEEEEEEeCccceeee
Q psy15224 328 KRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVK--KN-QKSVIKKRFFPGYVLIEMEMTDESWHLV 404 (502)
Q Consensus 328 ~~WYvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~--~g-~~~~~~~plfpgYvFv~~~~~~~~~~~i 404 (502)
|+||+++|++|+|+++++.|.+. | +++|+|+.+..+++ +| +.+.+.+|||||||||+++++++ +..+
T Consensus 1 k~WYvl~~~~~~E~~v~~~L~~~----~-----i~~~~P~~~~~~~~~~~g~~~~~~~~plfpgYvFv~~~~~~~-~~~i 70 (92)
T PF02357_consen 1 KRWYVLRTKPGKEQKVAERLERQ----G-----IEAFLPMREVIRRRKPRGKKVKRVERPLFPGYVFVRMDMEDE-LWKI 70 (92)
T ss_dssp -EEEEEEESTTTHHHHHHHHCHH----H-----HHHE-SEEEEEECSSSSSCSEEEEEEESSTTEEEEEE-TTHH-HHHH
T ss_pred CEEEEEEEECChHHHHHHHHHHc----C-----CceeccEEEEEEEEecCCceEEEEEEEecCcEEEEEEEcchh-hhhh
Confidence 68999999999999999998652 2 35699999986664 67 46668999999999999997744 4566
Q ss_pred eccCCeeEeccCCCCcceeCCHH
Q psy15224 405 KNTKKVTGFIGGKSNRPTPISSK 427 (502)
Q Consensus 405 ~~~~~v~~~l~~~~~~p~~v~~~ 427 (502)
++++|+.+||++ +++|++|||+
T Consensus 71 ~~~~gv~~~l~~-g~~p~~vpd~ 92 (92)
T PF02357_consen 71 RSTPGVSGFLRF-GGKPAPVPDE 92 (92)
T ss_dssp HHSTTEEEEEES-SSSSBEB-HH
T ss_pred hcCCCeEEEEcC-CCEEeecCCC
Confidence 999999999998 7999999985
No 51
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.80 E-value=1.8e-18 Score=186.98 Aligned_cols=181 Identities=27% Similarity=0.258 Sum_probs=140.9
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHH---HhhcCCCCCCCeE
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIREL---LNKYEFPGNDIPI 79 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~---l~~~~~~~~~~~i 79 (502)
.|++.+|++|||+||++|+.+||.+|+..+...++| +||++||||+.+.+ ++.+..++... ...++ ..+++
T Consensus 356 rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~--~e~V~~eL~~~~~~~e~~g---~~vp~ 429 (787)
T PRK05306 356 RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKPGAN--PDRVKQELSEYGLVPEEWG---GDTIF 429 (787)
T ss_pred hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECccccccC--HHHHHHHHHHhcccHHHhC---CCceE
Confidence 478899999999999999999999999999999999 55569999997641 12232333221 11111 24789
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC--CCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEe
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI--PTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEII 157 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~--p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~ 157 (502)
+++||++|. ++.+|++.|.... .......+.|+...|.+++.+++.|++++|+|++|+|+.||.|.++
T Consensus 430 vpvSAktG~----------GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g 499 (787)
T PRK05306 430 VPVSAKTGE----------GIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAG 499 (787)
T ss_pred EEEeCCCCC----------CchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEEC
Confidence 999999998 7888888875321 1223445688999999999999999999999999999999999886
Q ss_pred ecCCCeeEEEEEEEEc-ceecceeecCCeEEEEecCCCccCc-ccceEEeCC
Q psy15224 158 GIKDTVKTTCTGVEMF-RKLLDQGQAGDNIGLLLRGTKREDV-ERGQVLAKP 207 (502)
Q Consensus 158 p~~~~~~~~V~~i~~~-~~~v~~a~aG~~v~l~l~~~~~~~i-~~G~vl~~~ 207 (502)
+ ...+|++++.. +.++++|.||+.|.+ .|++ ++ ..||+|+..
T Consensus 500 ~----~~gkVr~m~~~~~~~v~~A~pGd~V~I--~gl~--~~p~~Gd~l~~~ 543 (787)
T PRK05306 500 T----TYGRVRAMVDDNGKRVKEAGPSTPVEI--LGLS--GVPQAGDEFVVV 543 (787)
T ss_pred C----cEEEEEEEECCCCCCCCEEcCCCeEEE--eCCC--CCCCCCCEEEEc
Confidence 4 45789999985 578999999999998 3443 34 689999844
No 52
>PRK00007 elongation factor G; Reviewed
Probab=99.80 E-value=2.5e-18 Score=187.09 Aligned_cols=188 Identities=23% Similarity=0.267 Sum_probs=141.4
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcC----------
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE---------- 71 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~---------- 71 (502)
..|++.+|+++|||||.+|++.||++++..+..+|+|.+++ +||||+.+. + +....+++.+.+...-
T Consensus 93 ~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~-vNK~D~~~~-~-~~~~~~~i~~~l~~~~~~~~ipisa~ 169 (693)
T PRK00007 93 ERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAF-VNKMDRTGA-D-FYRVVEQIKDRLGANPVPIQLPIGAE 169 (693)
T ss_pred HHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEE-EECCCCCCC-C-HHHHHHHHHHHhCCCeeeEEecCccC
Confidence 46788999999999999999999999999999999997654 999999864 1 2223333433332100
Q ss_pred --------------------------------------------------------------------------------
Q psy15224 72 -------------------------------------------------------------------------------- 71 (502)
Q Consensus 72 -------------------------------------------------------------------------------- 71 (502)
T Consensus 170 ~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~~ 249 (693)
T PRK00007 170 DDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAALRKAT 249 (693)
T ss_pred CcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCC--------------------CCCCCeeEEEeEEEe
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR--------------------AIDGAFLLPVEDVFS 131 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~--------------------~~~~p~~~~v~~~~~ 131 (502)
.....+|+++.||.++. ++..||+.|.+++|+|.. +.+.|+.++|+++..
T Consensus 250 ~~~~~~Pv~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~ 319 (693)
T PRK00007 250 IANEIVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMT 319 (693)
T ss_pred hcCcEEEEEecccccCc----------CHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeee
Confidence 00012334444444433 678999999999997741 235689999999999
Q ss_pred eCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc----eecceeecCCeEEEEecCCCccCcccceEEeCC
Q psy15224 132 ISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKP 207 (502)
Q Consensus 132 ~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 207 (502)
.++.|+++++||+||+|+.||+|+.. ..+...+|.+|+... .+++++.|||++++ .|++ ++..|++|++.
T Consensus 320 d~~~G~ia~~RV~sGtl~~g~~v~~~--~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i--~gl~--~~~~GdtL~~~ 393 (693)
T PRK00007 320 DPFVGKLTFFRVYSGVLESGSYVLNS--TKGKKERIGRILQMHANKREEIKEVRAGDIAAA--VGLK--DTTTGDTLCDE 393 (693)
T ss_pred cCCCCcEEEEEEeeeEEcCCCEEEeC--CCCceeEeceeEEeccCCcccccccCCCcEEEE--eCCc--cCCcCCEeeCC
Confidence 99999999999999999999999753 234567788888764 57999999999999 5543 56899999865
Q ss_pred C
Q psy15224 208 G 208 (502)
Q Consensus 208 ~ 208 (502)
+
T Consensus 394 ~ 394 (693)
T PRK00007 394 K 394 (693)
T ss_pred C
Confidence 4
No 53
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.79 E-value=1.7e-18 Score=189.43 Aligned_cols=200 Identities=24% Similarity=0.335 Sum_probs=149.5
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC--------h-HHHHHHHHHHHHHHHhhcC-
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD--------D-EELLELVEIEIRELLNKYE- 71 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~--------~-~~~~~~i~~~i~~~l~~~~- 71 (502)
..|++.+|+||+|||+.+|+..||+.++..+...++|.++ ++||||+.. . ++.+..+.+++..++..+.
T Consensus 105 ~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv-~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 183 (731)
T PRK07560 105 TRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVL-FINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLIKGMAP 183 (731)
T ss_pred HHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEE-EEECchhhcccccCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4578899999999999999999999999999999999755 599999862 1 3455555566666655432
Q ss_pred --------CCCCCCeEEEccccccccCCCCC--------------CC----------cccHHHHHHHHhhcCCCCCC---
Q psy15224 72 --------FPGNDIPIIKGSAKLALEGDTGP--------------LG----------EQSILSLSKALDTYIPTPNR--- 116 (502)
Q Consensus 72 --------~~~~~~~ii~iSa~~g~~~~~~w--------------~~----------~~~i~~Ll~~l~~~~p~~~~--- 116 (502)
+...+..+++.||+.++....+- |. -|-+..||+.+.+++|+|..
T Consensus 184 ~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~ 263 (731)
T PRK07560 184 EEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPNPIEAQK 263 (731)
T ss_pred hhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCChhhhhh
Confidence 22223456778988765321000 00 01123689999999998741
Q ss_pred ----------------------CCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEc-
Q psy15224 117 ----------------------AIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF- 173 (502)
Q Consensus 117 ----------------------~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~- 173 (502)
+.+.|+.+.|++++.+++.|++++|||+||+|+.||.|++.+. +.+.+|..|+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~--~~~~~v~~i~~~~ 341 (731)
T PRK07560 264 YRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGA--KKKNRVQQVGIYM 341 (731)
T ss_pred hcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCC--CCceEeheehhhh
Confidence 2345899999999999999999999999999999999998753 356788888866
Q ss_pred ---ceecceeecCCeEEEEecCCCccCcccceEEeCCC
Q psy15224 174 ---RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 208 (502)
Q Consensus 174 ---~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 208 (502)
..+++++.|||++++ .|+ .++.+|++|++..
T Consensus 342 g~~~~~v~~a~AGdIv~i--~gl--~~~~~GdtL~~~~ 375 (731)
T PRK07560 342 GPEREEVEEIPAGNIAAV--TGL--KDARAGETVVSVE 375 (731)
T ss_pred cCCCceeeeECCCCEEEE--Ecc--cccccCCEEeCCC
Confidence 358999999999999 453 4567899998764
No 54
>KOG0052|consensus
Probab=99.78 E-value=5.6e-19 Score=171.07 Aligned_cols=242 Identities=26% Similarity=0.412 Sum_probs=190.7
Q ss_pred CccccccCCEEEEEEECCCCCC-------cchHHHHHHHHHhCCCeEEEEEEcCCCCCh---HHHHHHHHHHHHHHHhhc
Q psy15224 1 MITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMVDD---EELLELVEIEIRELLNKY 70 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~-------~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~---~~~~~~i~~~i~~~l~~~ 70 (502)
|++|.++||.++|+|.+..|.+ +||+||+.++..+|+..+++.+||||...+ +.+++++.++.+...+..
T Consensus 99 mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s~~r~~ei~k~~~~~~~~~ 178 (391)
T KOG0052|consen 99 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARYEEIKKEVSSYIKKI 178 (391)
T ss_pred EEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCccccchhhhheeeeeeeecc
Confidence 7899999999999999955433 999999999999999999999999998764 334443322222221111
Q ss_pred CCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeec
Q psy15224 71 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 150 (502)
Q Consensus 71 ~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~ 150 (502)
++. .... .++++...+.| +..|.++.
T Consensus 179 g~n--------------------------~~~~----------------------~~~~~~~~g~~------~~t~iie~ 204 (391)
T KOG0052|consen 179 GYN--------------------------PAAV----------------------LQDVYKIGGIG------VETGISEP 204 (391)
T ss_pred ccC--------------------------Chhh----------------------hccceeeccee------eeeeeccC
Confidence 110 0001 34455555555 78888999
Q ss_pred CCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCC--cccEEEEEEEEeecCCC
Q psy15224 151 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIK--PHKHFTGEIYALSKDEG 228 (502)
Q Consensus 151 gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~--~~~~f~a~v~~l~~~~~ 228 (502)
++.+...|.. ...++++..++++.-+++.+|+.++++..++...++.+|+++.+.++.+ ....|.+++.+++++
T Consensus 205 ~~~v~~~~~~--~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~~p~~~~~g~t~qviilnhp-- 280 (391)
T KOG0052|consen 205 GMDVTFAPSG--VTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKNDPPVEAAGFTAQVIILNHP-- 280 (391)
T ss_pred ccceeccccc--cccccccEEEEeccCccCCCcceeeeecccCccCcccccceecccccCCccccccceeeEEEecCc--
Confidence 9888766543 4788999999998888999999999999999999999999999887743 357899999999997
Q ss_pred CCCcccccCCeeEEEeeeeeEEEEEEc-------------cCCCccccCCCEEEEEEEeCceEecccC------CeEEEE
Q psy15224 229 GRHTPFFSNYRPQFYFRTTDVTGSIEL-------------PKNKEMVMPGDNVLITVRLINPIAMEEG------LRFAIR 289 (502)
Q Consensus 229 ~~~~~i~~g~~~~~~~~~~~~~~~i~~-------------~~~~~~~~~~~~~~v~~~~~~pi~~~~~------~r~ilr 289 (502)
..+..||.|.+-|+++.+.|++.- ...++.+++++.+.+.+.+.+|+|++.. +||.+|
T Consensus 281 ---gqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~kp~~ve~~~~~~~l~rfav~ 357 (391)
T KOG0052|consen 281 ---GQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGKPLCVESFSDYVPLGRFAVR 357 (391)
T ss_pred ---cccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCCccccccccccccccchhhh
Confidence 358899999999999999999852 2466789999999999999999999875 699999
Q ss_pred eCCeEEEEEEEeec
Q psy15224 290 EGVQQFIQDNLLTK 303 (502)
Q Consensus 290 ~~~~~ig~G~i~~~ 303 (502)
|...|+|.|.|-..
T Consensus 358 d~~~tvavgvikav 371 (391)
T KOG0052|consen 358 DMRQTVAVGVIKAV 371 (391)
T ss_pred hhhccccccceeee
Confidence 99999999998643
No 55
>PRK12739 elongation factor G; Reviewed
Probab=99.78 E-value=4.8e-18 Score=185.03 Aligned_cols=188 Identities=23% Similarity=0.265 Sum_probs=142.3
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcC----------
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE---------- 71 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~---------- 71 (502)
..+++.+|++++||||.+|+..||++++..+...|+|.+++ +||||+.+. + +..+.+++.+.+....
T Consensus 91 ~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~-iNK~D~~~~-~-~~~~~~~i~~~l~~~~~~~~iPis~~ 167 (691)
T PRK12739 91 ERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVF-VNKMDRIGA-D-FFRSVEQIKDRLGANAVPIQLPIGAE 167 (691)
T ss_pred HHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEE-EECCCCCCC-C-HHHHHHHHHHHhCCCceeEEeccccc
Confidence 45788999999999999999999999999999999997655 999999864 1 2233334443332100
Q ss_pred --------------------------------------------------------------------------------
Q psy15224 72 -------------------------------------------------------------------------------- 71 (502)
Q Consensus 72 -------------------------------------------------------------------------------- 71 (502)
T Consensus 168 ~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~~~~ 247 (691)
T PRK12739 168 DDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAIRKAT 247 (691)
T ss_pred ccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCC-------------------CCCCCeeEEEeEEEee
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR-------------------AIDGAFLLPVEDVFSI 132 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~-------------------~~~~p~~~~v~~~~~~ 132 (502)
.....+|+++.||.++. ++..||+.|..++|+|.. +.+.|+.+.|++++..
T Consensus 248 ~~~~~~Pv~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d 317 (691)
T PRK12739 248 INMEFFPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTD 317 (691)
T ss_pred HcCCEEEEEeccccCCc----------cHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeC
Confidence 00112345555555544 788999999999997631 2456899999999999
Q ss_pred CCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc----eecceeecCCeEEEEecCCCccCcccceEEeCCC
Q psy15224 133 SGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 208 (502)
Q Consensus 133 ~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 208 (502)
++.|+++++||+||+|+.||.|+.. +.+...+|.+|+... .+++++.|||++++ .|++ +++.|++|++.+
T Consensus 318 ~~~G~i~~~RV~sGtL~~g~~v~~~--~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl~--~~~~gdtl~~~~ 391 (691)
T PRK12739 318 PFVGRLTFFRVYSGVLESGSYVLNT--TKGKKERIGRLLQMHANKREEIKEVYAGDIAAA--VGLK--DTTTGDTLCDEK 391 (691)
T ss_pred CCCCeEEEEEEeeeEEcCCCEEEeC--CCCceEEecceEEEecCCcccccccCCCCEEEE--eCCC--cccCCCEEeCCC
Confidence 9999999999999999999999754 234567788887653 57999999999999 4543 478999998664
No 56
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.78 E-value=1.4e-17 Score=176.69 Aligned_cols=160 Identities=27% Similarity=0.286 Sum_probs=125.9
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC-h-------------------HHHHHHHHHH
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD-D-------------------EELLELVEIE 62 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~-~-------------------~~~~~~i~~~ 62 (502)
.|++.+|+++||+|+++|+.+||.+++.++...++|. ++++||||+.. + ++.|++...+
T Consensus 90 ~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpi-IvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~e 168 (586)
T PRK04004 90 RGGALADIAILVVDINEGFQPQTIEAINILKRRKTPF-VVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYE 168 (586)
T ss_pred HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCE-EEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999995 55599999862 1 1233444445
Q ss_pred HHHHHhhcCCCC----------CCCeEEEccccccccCCCCCCCcccHHHHHHHHhh----cCCC-CCCCCCCCeeEEEe
Q psy15224 63 IRELLNKYEFPG----------NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT----YIPT-PNRAIDGAFLLPVE 127 (502)
Q Consensus 63 i~~~l~~~~~~~----------~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~----~~p~-~~~~~~~p~~~~v~ 127 (502)
+...|...++.. ..++++|+||++|. ++.+|++.+.. .++. -....+.|++++|.
T Consensus 169 v~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGe----------Gi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ 238 (586)
T PRK04004 169 LIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGE----------GIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVL 238 (586)
T ss_pred HHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCC----------ChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEE
Confidence 555666666543 35799999999987 78787777643 2222 23446789999999
Q ss_pred EEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEc
Q psy15224 128 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF 173 (502)
Q Consensus 128 ~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~ 173 (502)
+++.++|.|++++|+|.+|+|++||.+.++|......++|++|..+
T Consensus 239 ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~ 284 (586)
T PRK04004 239 EVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKP 284 (586)
T ss_pred EEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecC
Confidence 9999999999999999999999999999988643346799999976
No 57
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.76 E-value=3.5e-17 Score=171.43 Aligned_cols=189 Identities=24% Similarity=0.324 Sum_probs=143.1
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh--HHHHHHHHHHHH----------------
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEIR---------------- 64 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~--~~~~~~i~~~i~---------------- 64 (502)
.++..+|++|+|+|+.+|+..||++++..+...++|.+++ +||||+... .+.++++.+.+.
T Consensus 98 ~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~-iNK~D~~~a~~~~~l~~i~~~l~~~~~p~~~Pig~~~~f 176 (526)
T PRK00741 98 RTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTF-INKLDRDGREPLELLDEIEEVLGIACAPITWPIGMGKRF 176 (526)
T ss_pred HHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEE-EECCcccccCHHHHHHHHHHHhCCCCeeEEeccccCCce
Confidence 3567899999999999999999999999999999996655 999998653 222222222111
Q ss_pred -------------------------------------HHHh-----------------------hcCCCCCCCeEEEccc
Q psy15224 65 -------------------------------------ELLN-----------------------KYEFPGNDIPIIKGSA 84 (502)
Q Consensus 65 -------------------------------------~~l~-----------------------~~~~~~~~~~ii~iSa 84 (502)
.++. ..-..+..+|+++.||
T Consensus 177 ~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA 256 (526)
T PRK00741 177 KGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAGELTPVFFGSA 256 (526)
T ss_pred eEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcCCeEEEEEeec
Confidence 0000 0000112378999999
Q ss_pred cccccCCCCCCCcccHHHHHHHHhhcCCCCCCC---------CCCCeeEEEeEEE---eeCCCeEEEEEEEEEeeeecCC
Q psy15224 85 KLALEGDTGPLGEQSILSLSKALDTYIPTPNRA---------IDGAFLLPVEDVF---SISGRGTVVTGRVERGIVRVGE 152 (502)
Q Consensus 85 ~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~---------~~~p~~~~v~~~~---~~~~~G~v~~g~v~sG~l~~gd 152 (502)
+++. |+..||+.+.+++|+|... .+.++...|+++. ..+++|+++++||+||+++.|+
T Consensus 257 ~~n~----------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~ 326 (526)
T PRK00741 257 LNNF----------GVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVRVCSGKFEKGM 326 (526)
T ss_pred ccCc----------CHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEEEeccEECCCC
Confidence 9987 9999999999999987421 2456888999987 4578999999999999999999
Q ss_pred EEEEeecCCCeeEEEEEEEEcc----eecceeecCCeEEEEecCCCccCcccceEEeCCC
Q psy15224 153 ELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 208 (502)
Q Consensus 153 ~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 208 (502)
+|+.. ..++..++.+++... .++++|.|||++++ . +..+++.||+|++.+
T Consensus 327 ~v~~~--~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v--~--~l~~~~~GDTL~~~~ 380 (526)
T PRK00741 327 KVRHV--RTGKDVRISNALTFMAQDREHVEEAYAGDIIGL--H--NHGTIQIGDTFTQGE 380 (526)
T ss_pred EEEec--cCCceEEecceEEEecCCceECceeCCCCEEEE--E--CCCCCccCCCccCCC
Confidence 99865 345677887777653 68999999999999 4 456789999998754
No 58
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.75 E-value=2.9e-17 Score=175.96 Aligned_cols=182 Identities=21% Similarity=0.219 Sum_probs=140.3
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHH---HhhcCCCCCCCeE
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIREL---LNKYEFPGNDIPI 79 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~---l~~~~~~~~~~~i 79 (502)
.|+..+|++||||||++|+.+||.+|+..+...++|. |+|+||||+.+.. ++.+..++..+ ...++ ..+|+
T Consensus 314 rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPi-IVViNKiDl~~~~--~e~v~~eL~~~~ll~e~~g---~~vpv 387 (742)
T CHL00189 314 RGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPI-IVAINKIDKANAN--TERIKQQLAKYNLIPEKWG---GDTPM 387 (742)
T ss_pred HHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceE-EEEEECCCccccC--HHHHHHHHHHhccchHhhC---CCceE
Confidence 4788999999999999999999999999999999995 4559999997631 22233333221 11111 24789
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCC--CCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEe
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIP--TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEII 157 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p--~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~ 157 (502)
+++||++|. ++.+|++.|..... ......+.|+...|.++..+++.|++++|+|.+|+|+.||.+.++
T Consensus 388 v~VSAktG~----------GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g 457 (742)
T CHL00189 388 IPISASQGT----------NIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIG 457 (742)
T ss_pred EEEECCCCC----------CHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEEC
Confidence 999999997 88999998866432 222334568888999998889999999999999999999999887
Q ss_pred ecCCCeeEEEEEEEEc-ceecceeecCCeEEEEecCCCccCcccceEEeCC
Q psy15224 158 GIKDTVKTTCTGVEMF-RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKP 207 (502)
Q Consensus 158 p~~~~~~~~V~~i~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 207 (502)
| ...+|+++... +.++.+|.||+.|.+ .|++ .....|+.+.-.
T Consensus 458 ~----~~gkVr~m~~~~~~~v~~a~pgdiV~I--~gl~-~~~~~Gd~l~v~ 501 (742)
T CHL00189 458 T----SYAKIRGMINSLGNKINLATPSSVVEI--WGLS-SVPATGEHFQVF 501 (742)
T ss_pred C----cceEEEEEEcCCCcCccEEcCCCceEe--cCcc-cCCCCCCEEEEe
Confidence 5 34689998854 578999999999988 5543 455678888643
No 59
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.75 E-value=4.7e-17 Score=177.45 Aligned_cols=187 Identities=24% Similarity=0.286 Sum_probs=139.8
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCC----------
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF---------- 72 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~---------- 72 (502)
.+++.+|+++||||+.+|+..||++++..+...++|.+++ +||||+.+. + ++...+++.+.+....+
T Consensus 94 ~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivv-iNK~D~~~~-~-~~~~~~~i~~~l~~~~~~~~ipis~~~ 170 (689)
T TIGR00484 94 RSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAF-VNKMDKTGA-N-FLRVVNQIKQRLGANAVPIQLPIGAED 170 (689)
T ss_pred HHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEE-EECCCCCCC-C-HHHHHHHHHHHhCCCceeEEeccccCC
Confidence 4677899999999999999999999999999999997765 999999864 1 22233334333321000
Q ss_pred -------------------------------------------------------------------------------C
Q psy15224 73 -------------------------------------------------------------------------------P 73 (502)
Q Consensus 73 -------------------------------------------------------------------------------~ 73 (502)
.
T Consensus 171 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~~~~~ 250 (689)
T TIGR00484 171 NFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIRKGVLN 250 (689)
T ss_pred CceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 0
Q ss_pred CCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCC-------------------CCCCCeeEEEeEEEeeCC
Q psy15224 74 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR-------------------AIDGAFLLPVEDVFSISG 134 (502)
Q Consensus 74 ~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~-------------------~~~~p~~~~v~~~~~~~~ 134 (502)
...+|+++.||.++. ++..||+.|..++|+|.. +.+.|+.++|+++...++
T Consensus 251 ~~~~PV~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~ 320 (689)
T TIGR00484 251 CEFFPVLCGSAFKNK----------GVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPF 320 (689)
T ss_pred CCEEEEEeccccCCc----------cHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCC
Confidence 112344444444443 789999999999997742 225689999999999999
Q ss_pred CeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc----eecceeecCCeEEEEecCCCccCcccceEEeCCC
Q psy15224 135 RGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 208 (502)
Q Consensus 135 ~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 208 (502)
.|.++++||+||+|+.||+|+.. +.+...+|..|+... .+++++.|||++++ .|+ .++..|++|++.+
T Consensus 321 ~G~i~~~RV~sGtL~~g~~v~~~--~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~~~gdtl~~~~ 392 (689)
T TIGR00484 321 VGQLTFVRVYSGVLKSGSYVKNS--RKNKKERVGRLVKMHANNREEIKEVRAGDICAA--IGL--KDTTTGDTLCDPK 392 (689)
T ss_pred CCeEEEEEEEEeEEcCCCEEEeC--CCCceEEecceEEeecCCcccccccCCCCEEEE--cCC--CCCCCCCEEeCCC
Confidence 99999999999999999999864 234456777777653 57999999999999 554 3568899998665
No 60
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.75 E-value=6.4e-17 Score=178.48 Aligned_cols=190 Identities=24% Similarity=0.305 Sum_probs=139.9
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC-hH----------------HHHHHHHHHHHH
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD-DE----------------ELLELVEIEIRE 65 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~-~~----------------~~~~~i~~~i~~ 65 (502)
.+++.+|+++||+|+++|+++||.+++.++...++|.++ |+||+|+.. |. ...+++..++.+
T Consensus 545 ~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIV-ViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 545 RGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVV-AANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred hhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEE-EEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999999999554 599999963 21 112222222222
Q ss_pred ---HHhhcCCCC----------CCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCC-----CCCCCCCCCeeEEEe
Q psy15224 66 ---LLNKYEFPG----------NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP-----TPNRAIDGAFLLPVE 127 (502)
Q Consensus 66 ---~l~~~~~~~----------~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p-----~~~~~~~~p~~~~v~ 127 (502)
.|...|+.. ..++++|+||++|. ++.+|++.|....+ ......+.|+++.|.
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGe----------GId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~Vl 693 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGE----------GIPELLMMVAGLAQKYLEERLKLNVEGYAKGTIL 693 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCC----------CHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEE
Confidence 244445432 36899999999998 89999988754222 123335689999999
Q ss_pred EEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc------------eecceeecCCeEEEEecCCCc
Q psy15224 128 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR------------KLLDQGQAGDNIGLLLRGTKR 195 (502)
Q Consensus 128 ~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~------------~~v~~a~aG~~v~l~l~~~~~ 195 (502)
+++.++|.|++++|.|.+|+|++||.+.++|..+....+|+++...+ .+++++.|...|.+...|++
T Consensus 694 Ev~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~- 772 (1049)
T PRK14845 694 EVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLE- 772 (1049)
T ss_pred EEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCcc-
Confidence 99999999999999999999999999999986444578999987531 35677777777777545544
Q ss_pred cCcccceEEe
Q psy15224 196 EDVERGQVLA 205 (502)
Q Consensus 196 ~~i~~G~vl~ 205 (502)
.+..|+-+.
T Consensus 773 -~~~aG~~~~ 781 (1049)
T PRK14845 773 -EVLAGSPIR 781 (1049)
T ss_pred -ccCCCCeEE
Confidence 235565554
No 61
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.75 E-value=8.5e-17 Score=169.86 Aligned_cols=189 Identities=24% Similarity=0.300 Sum_probs=133.8
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC-hH-----HHHH-------HHHHH-------
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD-DE-----ELLE-------LVEIE------- 62 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~-~~-----~~~~-------~i~~~------- 62 (502)
.+++.+|+++||+|+++|+.+||.+++.+++..++|.+ +++||+|+.+ +. ..++ .+..+
T Consensus 88 ~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiI-Vv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~ 166 (590)
T TIGR00491 88 RGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFV-VAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYN 166 (590)
T ss_pred HHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEE-EEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHH
Confidence 46688999999999999999999999999999999955 5599999974 10 0000 11111
Q ss_pred HHHHHhhcCCCC----------CCCeEEEccccccccCCCCCCCcccHHHHHHHHhhc----CC-CCCCCCCCCeeEEEe
Q psy15224 63 IRELLNKYEFPG----------NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY----IP-TPNRAIDGAFLLPVE 127 (502)
Q Consensus 63 i~~~l~~~~~~~----------~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~----~p-~~~~~~~~p~~~~v~ 127 (502)
+...+...++.. ..++++|+||++|. ++++|++.|... ++ ......+.|++++|.
T Consensus 167 lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe----------GideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~ 236 (590)
T TIGR00491 167 LVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE----------GIPELLTMLAGLAQQYLEEQLKLEEEGPARGTIL 236 (590)
T ss_pred HHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC----------ChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEE
Confidence 112233334332 25799999999997 888888876432 21 112345689999999
Q ss_pred EEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc------------eecceeecCCeEEEEecCCCc
Q psy15224 128 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR------------KLLDQGQAGDNIGLLLRGTKR 195 (502)
Q Consensus 128 ~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~------------~~v~~a~aG~~v~l~l~~~~~ 195 (502)
+++.++|.|++++|.|.+|+|++||.+.++|......++|+++...+ ..+.++.|...+-+...|++.
T Consensus 237 e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~ 316 (590)
T TIGR00491 237 EVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD 316 (590)
T ss_pred EEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC
Confidence 99999999999999999999999999999986433568999998764 244555555555554444432
Q ss_pred cCcccceEE
Q psy15224 196 EDVERGQVL 204 (502)
Q Consensus 196 ~~i~~G~vl 204 (502)
...|+.+
T Consensus 317 --~~aG~~~ 323 (590)
T TIGR00491 317 --VMAGSPI 323 (590)
T ss_pred --CCCCCEE
Confidence 2345444
No 62
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=1e-17 Score=153.88 Aligned_cols=112 Identities=78% Similarity=1.156 Sum_probs=98.0
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
|+.|++.+|++++||||.+|+.+||++|+.++..+|+|++|+++||||+++.++.++.+.+++..+++.++++..++|++
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~ii 161 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIV 161 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEE
Confidence 35788999999999999999999999999999999999777779999998655677778889999999999977789999
Q ss_pred EccccccccCC--CCCCCcccHHHHHHHHhhcCCCC
Q psy15224 81 KGSAKLALEGD--TGPLGEQSILSLSKALDTYIPTP 114 (502)
Q Consensus 81 ~iSa~~g~~~~--~~w~~~~~i~~Ll~~l~~~~p~~ 114 (502)
|+||++|.|.. ++||+ ++..|+++|++..|+|
T Consensus 162 piSa~~g~n~~~~~~w~~--~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 162 RGSALKALEGDDPNKWVK--KILELLDALDSYIPTP 195 (195)
T ss_pred EeeCccccCCCCCCcchh--cHhHHHHHHHhCCCCC
Confidence 99999999864 68996 5788999998866543
No 63
>PRK12740 elongation factor G; Reviewed
Probab=99.74 E-value=5e-17 Score=177.37 Aligned_cols=187 Identities=27% Similarity=0.366 Sum_probs=144.5
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhh-------------
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK------------- 69 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~------------- 69 (502)
.++..+|++++|+|+..|...|+..++..+...++|.+++ +||+|+.... +..+.+++.+.+..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv-~NK~D~~~~~--~~~~~~~l~~~l~~~~~~~~~p~~~~~ 155 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIF-VNKMDRAGAD--FFRVLAQLQEKLGAPVVPLQLPIGEGD 155 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEE-EECCCCCCCC--HHHHHHHHHHHHCCCceeEEecccCCC
Confidence 4677899999999999999999999999999999997775 9999987531 11122222222110
Q ss_pred --------------------------------------------------------------------------cCCCCC
Q psy15224 70 --------------------------------------------------------------------------YEFPGN 75 (502)
Q Consensus 70 --------------------------------------------------------------------------~~~~~~ 75 (502)
.-....
T Consensus 156 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~ 235 (668)
T PRK12740 156 DFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGE 235 (668)
T ss_pred CceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence 000112
Q ss_pred CCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCC-----------------CCCCCeeEEEeEEEeeCCCeEE
Q psy15224 76 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR-----------------AIDGAFLLPVEDVFSISGRGTV 138 (502)
Q Consensus 76 ~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~-----------------~~~~p~~~~v~~~~~~~~~G~v 138 (502)
.+|++++||.+|. |+..||+.+..++|+|.. +.+.|+.+.|++++..++.|++
T Consensus 236 ~~Pv~~gSA~~~~----------Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i 305 (668)
T PRK12740 236 IVPVFCGSALKNK----------GVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKL 305 (668)
T ss_pred EEEEEeccccCCc----------cHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcE
Confidence 4678889999987 899999999999998742 3457899999999999999999
Q ss_pred EEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEc----ceecceeecCCeEEEEecCCCccCcccceEEeCCC
Q psy15224 139 VTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 208 (502)
Q Consensus 139 ~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 208 (502)
++|||++|+|++||+|++.+. ....+|..|+.. ..+++++.|||++++ .|+ ..+..|++|++.+
T Consensus 306 ~~~RV~sG~L~~g~~v~~~~~--~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i--~gl--~~~~~Gdtl~~~~ 373 (668)
T PRK12740 306 SLVRVYSGTLKKGDTLYNSGT--GKKERVGRLYRMHGKQREEVDEAVAGDIVAV--AKL--KDAATGDTLCDKG 373 (668)
T ss_pred EEEEEeeeEEcCCCEEEeCCC--CCcEEecceeeecCCCccccCccCCCCEEEE--ecc--CccCCCCEEeCCC
Confidence 999999999999999998763 244566666644 368999999999999 454 3689999998654
No 64
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.74 E-value=2.3e-17 Score=132.02 Aligned_cols=89 Identities=33% Similarity=0.610 Sum_probs=83.9
Q ss_pred CCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCc
Q psy15224 119 DGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDV 198 (502)
Q Consensus 119 ~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i 198 (502)
+.||+|+|+++|++++.|++++|+|.+|+|+.||++.++|. +...+|++|+.++.++++|.|||.|+++|++++..++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~--~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v 79 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPA--GVTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDI 79 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCC--CcEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHc
Confidence 57999999999999999999999999999999999999985 3789999999999999999999999999999989999
Q ss_pred ccceEEeCCCC
Q psy15224 199 ERGQVLAKPGS 209 (502)
Q Consensus 199 ~~G~vl~~~~~ 209 (502)
++|++|+++++
T Consensus 80 ~~G~vl~~~~~ 90 (91)
T cd03693 80 KRGDVAGDSKN 90 (91)
T ss_pred CCcCEEccCCC
Confidence 99999998754
No 65
>PRK13351 elongation factor G; Reviewed
Probab=99.74 E-value=1.2e-16 Score=174.70 Aligned_cols=187 Identities=27% Similarity=0.365 Sum_probs=144.8
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhh-------------
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK------------- 69 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~------------- 69 (502)
.++..+|+++||+|+.+|...|+.+++..+...++|.+++ +||+|+... + +....+++.+.+..
T Consensus 92 ~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiv-iNK~D~~~~-~-~~~~~~~i~~~l~~~~~~~~~P~~~~~ 168 (687)
T PRK13351 92 RSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIF-INKMDRVGA-D-LFKVLEDIEERFGKRPLPLQLPIGSED 168 (687)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEE-EECCCCCCC-C-HHHHHHHHHHHHCCCeEEEEeccccCC
Confidence 4678899999999999999999999999999999997665 999998763 1 12222222222211
Q ss_pred -----------------------------------------------------------c--C----------------C
Q psy15224 70 -----------------------------------------------------------Y--E----------------F 72 (502)
Q Consensus 70 -----------------------------------------------------------~--~----------------~ 72 (502)
+ + .
T Consensus 169 ~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~~~~~ 248 (687)
T PRK13351 169 GFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLREGTR 248 (687)
T ss_pred ceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 0 0 0
Q ss_pred CCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCC------------------CCCCCeeEEEeEEEeeCC
Q psy15224 73 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR------------------AIDGAFLLPVEDVFSISG 134 (502)
Q Consensus 73 ~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~------------------~~~~p~~~~v~~~~~~~~ 134 (502)
....+|+++.||++|. |+..||+.|..++|+|.. +.+.|+.+.|++++..++
T Consensus 249 ~~~~~PV~~gSA~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~ 318 (687)
T PRK13351 249 SGHLVPVLFGSALKNI----------GIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPY 318 (687)
T ss_pred hCCEEEEEecccCcCc----------cHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeecCC
Confidence 1124678888999887 899999999999998742 335789999999999999
Q ss_pred CeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc----eecceeecCCeEEEEecCCCccCcccceEEeCCC
Q psy15224 135 RGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 208 (502)
Q Consensus 135 ~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 208 (502)
.|.++++||+||+|+.||+|++.+. +...++..|+..+ .+++++.|||++++ .|+ .++..|++|++.+
T Consensus 319 ~G~i~~~RV~sGtl~~g~~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~~~gdtl~~~~ 390 (687)
T PRK13351 319 AGKLTYLRVYSGTLRAGSQLYNGTG--GKREKVGRLFRLQGNKREEVDRAKAGDIVAV--AGL--KELETGDTLHDSA 390 (687)
T ss_pred CceEEEEEEeEEEEcCCCEEEeCCC--CCceEeeeEEEEccCCeeECCccCCCCEEEE--ECc--ccCccCCEEeCCC
Confidence 9999999999999999999998753 3456777777653 68999999999988 554 3567899998654
No 66
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.73 E-value=1.1e-16 Score=167.78 Aligned_cols=185 Identities=23% Similarity=0.295 Sum_probs=141.6
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh--HHHHHHHHHHHHHHHhhc----------
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEIRELLNKY---------- 70 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~--~~~~~~i~~~i~~~l~~~---------- 70 (502)
.++..+|++|+|||+..|+..||+.++..++..++|.+++ +||||+... ++.++ ++...+..-
T Consensus 99 ~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~Piivv-iNKiD~~~~~~~~ll~----~i~~~l~~~~~~~~~PIg~ 173 (527)
T TIGR00503 99 RTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTF-MNKLDRDIRDPLELLD----EVENELKINCAPITWPIGC 173 (527)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEE-EECccccCCCHHHHHH----HHHHHhCCCCccEEEEecC
Confidence 3567899999999999999999999999999999996655 999998642 22222 222222100
Q ss_pred ----------------------------------------------------------------------CCCCCCCeEE
Q psy15224 71 ----------------------------------------------------------------------EFPGNDIPII 80 (502)
Q Consensus 71 ----------------------------------------------------------------------~~~~~~~~ii 80 (502)
-..+..+|++
T Consensus 174 ~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~PV~ 253 (527)
T TIGR00503 174 GKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHGGEMTPVF 253 (527)
T ss_pred CCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhcCCeeEEE
Confidence 0011235778
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCC---------CCCCeeEEEeEEEe--e-CCCeEEEEEEEEEeee
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRA---------IDGAFLLPVEDVFS--I-SGRGTVVTGRVERGIV 148 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~---------~~~p~~~~v~~~~~--~-~~~G~v~~g~v~sG~l 148 (502)
+.||+++. |+..||+.+..++|+|... .+.+|...|+++.. + +++|++++.||+||++
T Consensus 254 ~GSA~~n~----------Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~RV~sG~l 323 (527)
T TIGR00503 254 FGTALGNF----------GVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKY 323 (527)
T ss_pred EeecccCc----------cHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEEEeeeEE
Confidence 88888877 8999999999999987532 24678889999886 5 5899999999999999
Q ss_pred ecCCEEEEeecCCCeeEEEEEEEEc----ceecceeecCCeEEEEecCCCccCcccceEEeCCC
Q psy15224 149 RVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 208 (502)
Q Consensus 149 ~~gd~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 208 (502)
+.|++|+.. +.+.+.++..++.. +.++++|.|||++++ . +..+++.||+|++.+
T Consensus 324 ~~g~~v~~~--~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~--~--~~~~~~~GDtl~~~~ 381 (527)
T TIGR00503 324 EKGMKLKHV--RTGKDVVISDALTFMAGDREHVEEAYAGDIIGL--H--NHGTIQIGDTFTQGE 381 (527)
T ss_pred cCCCEEEec--CCCCcEEecchhhhhcCCceEcceeCCCCEEEE--E--CCCCcccCCEecCCC
Confidence 999999765 34567788877765 368999999999999 3 456789999998743
No 67
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=9e-17 Score=171.17 Aligned_cols=187 Identities=27% Similarity=0.393 Sum_probs=142.4
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhh-------------
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK------------- 69 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~------------- 69 (502)
.++..+|.|++|+||.+|+++||+..++.|...++|.+++ |||||+... + +....+++...|..
T Consensus 95 rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~f-iNKmDR~~a-~-~~~~~~~l~~~l~~~~~~v~~pIg~~~ 171 (697)
T COG0480 95 RSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILF-VNKMDRLGA-D-FYLVVEQLKERLGANPVPVQLPIGAEE 171 (697)
T ss_pred HHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEE-EECcccccc-C-hhhhHHHHHHHhCCCceeeeccccCcc
Confidence 4678899999999999999999999999999999998887 999998743 1 11111222222211
Q ss_pred --------------------------------------------------------c--C----------------CCCC
Q psy15224 70 --------------------------------------------------------Y--E----------------FPGN 75 (502)
Q Consensus 70 --------------------------------------------------------~--~----------------~~~~ 75 (502)
+ + ....
T Consensus 172 ~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~~~~~~ 251 (697)
T COG0480 172 EFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKGTIAGK 251 (697)
T ss_pred ccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHhhhccc
Confidence 0 0 0011
Q ss_pred CCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCC--------------------CCCCCeeEEEeEEEeeCCC
Q psy15224 76 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR--------------------AIDGAFLLPVEDVFSISGR 135 (502)
Q Consensus 76 ~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~--------------------~~~~p~~~~v~~~~~~~~~ 135 (502)
..|+++.||.++ +++..||+++..++|+|.. +.+.|+.+.++++...+..
T Consensus 252 ~~pvl~gsa~kn----------~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~ 321 (697)
T COG0480 252 IVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFV 321 (697)
T ss_pred eeeEEeeecccC----------CcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCC
Confidence 344555555443 3789999999999998721 2368999999999999999
Q ss_pred eEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc----eecceeecCCeEEEEecCCCccCcccceEEeCCC
Q psy15224 136 GTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 208 (502)
Q Consensus 136 G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 208 (502)
|.+.++||+||+|+.||+++.. ..+.+.+|..|..++ .+++++.||+++++ .|+ .+...|+++|+.+
T Consensus 322 g~l~~~RvysGtl~~G~~v~n~--~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~--~Gl--~~~~tGdTl~~~~ 392 (697)
T COG0480 322 GKLTFVRVYSGTLKSGSEVLNS--TKGKKERVGRLLLMHGNEREEVDEVPAGDIVAL--VGL--KDATTGDTLCDEN 392 (697)
T ss_pred CeEEEEEEeccEEcCCCEEEeC--CCCccEEEEEEEEccCCceeecccccCccEEEE--Ecc--cccccCCeeecCC
Confidence 9999999999999999988765 345678899988775 57999999999999 554 4558899999766
No 68
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.3e-16 Score=160.63 Aligned_cols=180 Identities=27% Similarity=0.267 Sum_probs=132.9
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCC----CCCe
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG----NDIP 78 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~----~~~~ 78 (502)
.|++.+|+|+||||+++|+++||.|-+.++++.|+| |||++||||+.+. + .+.+..++ ...|+.. ..+.
T Consensus 74 RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~-n-p~~v~~el----~~~gl~~E~~gg~v~ 146 (509)
T COG0532 74 RGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVP-IVVAINKIDKPEA-N-PDKVKQEL----QEYGLVPEEWGGDVI 146 (509)
T ss_pred cCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCC-EEEEEecccCCCC-C-HHHHHHHH----HHcCCCHhhcCCceE
Confidence 488999999999999999999999999999999999 5666999999875 1 12222223 2234432 2578
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcCC--CCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEE
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP--TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEI 156 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p--~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i 156 (502)
++|+||++|. ++++||+.+.-... .-....+.+.+..|-++-..+|.|.+++.-|.+|+|++||.+.+
T Consensus 147 ~VpvSA~tg~----------Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~ 216 (509)
T COG0532 147 FVPVSAKTGE----------GIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVA 216 (509)
T ss_pred EEEeeccCCC----------CHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEEE
Confidence 9999999998 88999988753211 22334567888999999999999999999999999999999988
Q ss_pred eecCCCeeEEEEEEEEc-ceecceeecCCeEEEEecCCCccCcccceEEe
Q psy15224 157 IGIKDTVKTTCTGVEMF-RKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 205 (502)
Q Consensus 157 ~p~~~~~~~~V~~i~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 205 (502)
++. ..+|+.+... ..++..+.++..+.+ .|++.....-|..++
T Consensus 217 g~~----~g~I~t~v~~~~~~i~~a~ps~~v~i--~g~~evp~Ag~~~~v 260 (509)
T COG0532 217 GGE----YGRVRTMVDDLGKPIKEAGPSKPVEI--LGLSEVPAAGDVFIV 260 (509)
T ss_pred ccC----CCceEEeehhcCCCccccCCCCCeEE--eccccccccCceEEe
Confidence 643 3456665544 467777877766666 454443333343333
No 69
>KOG1145|consensus
Probab=99.72 E-value=8.4e-17 Score=160.31 Aligned_cols=181 Identities=27% Similarity=0.238 Sum_probs=139.0
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHH---HHhhcCCCCCCCeE
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRE---LLNKYEFPGNDIPI 79 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~---~l~~~~~~~~~~~i 79 (502)
.||..+|+++|||.|++|+++||.|.+..++..++| +||||||+|....+ .+.++.+|.. .++.+|- ++++
T Consensus 220 RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~GG---dVQv 293 (683)
T KOG1145|consen 220 RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVP-IVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLGG---DVQV 293 (683)
T ss_pred ccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCC-EEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcCC---ceeE
Confidence 589999999999999999999999999999999999 56679999987641 1223333322 1333443 6899
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC--CCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEe
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI--PTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEII 157 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~--p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~ 157 (502)
+|+||++|. +++.|.+++.-.. -.-......|....|-+..-++|+|.+++.-|..|||++|+.+..+
T Consensus 294 ipiSAl~g~----------nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G 363 (683)
T KOG1145|consen 294 IPISALTGE----------NLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAG 363 (683)
T ss_pred EEeecccCC----------ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEe
Confidence 999999998 7777777764321 1223345688899999999999999999999999999999988764
Q ss_pred ecCCCeeEEEEEEEEcc-eecceeecCCeEEEEecCCCccCcccceEEeC
Q psy15224 158 GIKDTVKTTCTGVEMFR-KLLDQGQAGDNIGLLLRGTKREDVERGQVLAK 206 (502)
Q Consensus 158 p~~~~~~~~V~~i~~~~-~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 206 (502)
..-++|+++..++ .++++|.|++.+.+ .|++.-. ..||-+..
T Consensus 364 ----~~w~KVr~l~D~nGk~i~~A~Ps~pv~V--~GwkdlP-~aGD~vle 406 (683)
T KOG1145|consen 364 ----KSWCKVRALFDHNGKPIDEATPSQPVEV--LGWKDLP-IAGDEVLE 406 (683)
T ss_pred ----chhhhhhhhhhcCCCCccccCCCCceEe--ecccCCC-CCCceEEE
Confidence 2457899988765 68999999999998 6766333 45665543
No 70
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.70 E-value=1.7e-16 Score=173.40 Aligned_cols=198 Identities=23% Similarity=0.298 Sum_probs=143.9
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh---------HHHHHHHHHHHHHHHhhcC-
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD---------EELLELVEIEIRELLNKYE- 71 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~---------~~~~~~i~~~i~~~l~~~~- 71 (502)
..++..+|+++||+|+.+|+..||++++..+...++|.++ ++||||+... ++.+..+...+...++...
T Consensus 104 ~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~iv-viNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 182 (720)
T TIGR00490 104 TRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVL-FINKVDRLINELKLTPQELQERFIKIITEVNKLIKAMAP 182 (720)
T ss_pred HHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEE-EEEChhcccchhcCCHHHHHHHHhhhhHHHHhhhhccCC
Confidence 3578899999999999999999999999999899999765 5999998631 3445555555555553320
Q ss_pred --------CCCCCCeEEEccccccccCC---------C-----------------CCCCcccHHHHHHHHhhcCCCCCC-
Q psy15224 72 --------FPGNDIPIIKGSAKLALEGD---------T-----------------GPLGEQSILSLSKALDTYIPTPNR- 116 (502)
Q Consensus 72 --------~~~~~~~ii~iSa~~g~~~~---------~-----------------~w~~~~~i~~Ll~~l~~~~p~~~~- 116 (502)
+.....+..+.|++.++... . .|. |-+..||+.+.+++|+|..
T Consensus 183 ~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--Pv~~~Lld~i~~~lPsP~~~ 260 (720)
T TIGR00490 183 EEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKS--PLHQVVLDMVIRHLPSPIEA 260 (720)
T ss_pred HHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhh--hHHHHHHHHHHHhCCChhhh
Confidence 10001122334444442100 0 111 1246789999999998741
Q ss_pred ------------------------CCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEE
Q psy15224 117 ------------------------AIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEM 172 (502)
Q Consensus 117 ------------------------~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~ 172 (502)
+.+.|+.+.|+++...++.|++++|||+||+|++||.|++.+. +...+|..|+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~--~~~~kv~~l~~ 338 (720)
T TIGR00490 261 QKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDR--KAKARIQQVGV 338 (720)
T ss_pred hhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCC--CCeeEeeEEEE
Confidence 1246899999999999999999999999999999999998863 46788999887
Q ss_pred cc----eecceeecCCeEEEEecCCCccCcccceEEeCCC
Q psy15224 173 FR----KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 208 (502)
Q Consensus 173 ~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 208 (502)
+. .++++|.|||+|++ .|+ .++.+|++|++++
T Consensus 339 ~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~GdtL~~~~ 374 (720)
T TIGR00490 339 YMGPERVEVDEIPAGNIVAV--IGL--KDAVAGETICTTV 374 (720)
T ss_pred eccCCccCccEECCCCEEEE--ECc--cccccCceeecCC
Confidence 63 58999999999999 453 4677999998665
No 71
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.69 E-value=2.2e-16 Score=124.14 Aligned_cols=83 Identities=33% Similarity=0.555 Sum_probs=78.4
Q ss_pred CeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCccc
Q psy15224 121 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 200 (502)
Q Consensus 121 p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~ 200 (502)
||+|+|+++|+++ .|++++|+|.+|++++||++.++|.+ ...+|++|+.++.++++|.|||.++++|++++..++++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~--~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~ 77 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSK--ESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISP 77 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCC--cEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCC
Confidence 7899999999998 99999999999999999999999853 78999999999999999999999999999988889999
Q ss_pred ceEEeC
Q psy15224 201 GQVLAK 206 (502)
Q Consensus 201 G~vl~~ 206 (502)
|++|++
T Consensus 78 G~vl~~ 83 (83)
T cd03698 78 GDVLCS 83 (83)
T ss_pred CCEEeC
Confidence 999974
No 72
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.68 E-value=3.5e-16 Score=123.93 Aligned_cols=85 Identities=27% Similarity=0.458 Sum_probs=79.5
Q ss_pred eeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCC--eeEEEEEEEEcceecceeecCCeEEEEecCCCccCcc
Q psy15224 122 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDT--VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVE 199 (502)
Q Consensus 122 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~--~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~ 199 (502)
|+|+|+++|++++.|++++|+|.+|++++||++.++|...+ ..++|++|+.++.++++|.|||.++++|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 57999999999999999999999999999999999996423 6899999999999999999999999999999999999
Q ss_pred cceEEeC
Q psy15224 200 RGQVLAK 206 (502)
Q Consensus 200 ~G~vl~~ 206 (502)
+|++|++
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999974
No 73
>KOG0465|consensus
Probab=99.67 E-value=3.2e-16 Score=157.91 Aligned_cols=188 Identities=21% Similarity=0.289 Sum_probs=145.4
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-H-HHH------------------------
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-E-ELL------------------------ 56 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~-~~~------------------------ 56 (502)
.++...|.|++|+||..|+..||....+.++.+|+|.+.+ |||||+... . ..+
T Consensus 123 RALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~F-iNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPig~e~~f 201 (721)
T KOG0465|consen 123 RALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICF-INKMDRMGASPFRTLNQIRTKLNHKPAVVQIPIGSESNF 201 (721)
T ss_pred hhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEE-EehhhhcCCChHHHHHHHHhhcCCchheeEccccccccc
Confidence 4678899999999999999999999999999999999888 999998632 0 000
Q ss_pred ---------------------------------------HHHHHHH----------------------HHHHhhcCCCCC
Q psy15224 57 ---------------------------------------ELVEIEI----------------------RELLNKYEFPGN 75 (502)
Q Consensus 57 ---------------------------------------~~i~~~i----------------------~~~l~~~~~~~~ 75 (502)
+++.+.+ ...+++.-.+..
T Consensus 202 ~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~Ti~r~ 281 (721)
T KOG0465|consen 202 KGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRATIKRS 281 (721)
T ss_pred hhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHHHhhcc
Confidence 1111111 111112223445
Q ss_pred CCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCC--------------------CCC-CCeeEEEeEEEeeCC
Q psy15224 76 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR--------------------AID-GAFLLPVEDVFSISG 134 (502)
Q Consensus 76 ~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~--------------------~~~-~p~~~~v~~~~~~~~ 134 (502)
.+|+++.||+.+. ++..||+++.++||+|.. ..+ .||....+++...+.
T Consensus 282 fvPVl~GSAlKNk----------GVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~f 351 (721)
T KOG0465|consen 282 FVPVLCGSALKNK----------GVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGRF 351 (721)
T ss_pred eeeEEechhhccc----------CcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecCc
Confidence 6899999999887 889999999999997621 012 288888899888777
Q ss_pred CeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc----eecceeecCCeEEEEecCCCccCcccceEEeCCCC
Q psy15224 135 RGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 209 (502)
Q Consensus 135 ~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 209 (502)
|...+.||++|+|++||.++-. +.++++++..+.+.| ++++++.|||+|++ .|+ +...||++.+..+
T Consensus 352 -GqLTyvRvYqG~L~kG~~iyN~--rtgKKvrv~RL~rmHa~~medV~~v~AG~I~al--fGi---dcasGDTftd~~~ 422 (721)
T KOG0465|consen 352 -GQLTYVRVYQGTLSKGDTIYNV--RTGKKVRVGRLVRMHANDMEDVNEVLAGDICAL--FGI---DCASGDTFTDKQN 422 (721)
T ss_pred -cceEEEEEeeeeecCCcEEEec--CCCceeEhHHHhHhcccccchhhhhhccceeee--ecc---ccccCceeccCcc
Confidence 9999999999999999999754 567888888777665 68999999999999 664 7899999998743
No 74
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=4.4e-16 Score=151.64 Aligned_cols=188 Identities=24% Similarity=0.358 Sum_probs=140.9
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh--HHHHHHHHHHHH------------------
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEIR------------------ 64 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~--~~~~~~i~~~i~------------------ 64 (502)
+..+|.|++||||.+|+.+||+..+..|+..++|.+-+ |||||+... -+.++++.++|.
T Consensus 102 LtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TF-iNKlDR~~rdP~ELLdEiE~~L~i~~~PitWPIG~gk~F~G 180 (528)
T COG4108 102 LTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTF-INKLDREGRDPLELLDEIEEELGIQCAPITWPIGMGKDFKG 180 (528)
T ss_pred HHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEE-eeccccccCChHHHHHHHHHHhCcceecccccccCCcccce
Confidence 34689999999999999999999999999999997776 999998643 233333333322
Q ss_pred --------------------------------------------------HHHhh--------cCCCCCCCeEEEccccc
Q psy15224 65 --------------------------------------------------ELLNK--------YEFPGNDIPIIKGSAKL 86 (502)
Q Consensus 65 --------------------------------------------------~~l~~--------~~~~~~~~~ii~iSa~~ 86 (502)
+++.. .-..++..|+++.||++
T Consensus 181 vy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~~TPVFFGSAl~ 260 (528)
T COG4108 181 VYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGELTPVFFGSALG 260 (528)
T ss_pred eeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCCccceEehhhhh
Confidence 00000 00233456888888888
Q ss_pred cccCCCCCCCcccHHHHHHHHhhcCCCCCCC---------CC---CCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEE
Q psy15224 87 ALEGDTGPLGEQSILSLSKALDTYIPTPNRA---------ID---GAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEEL 154 (502)
Q Consensus 87 g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~---------~~---~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v 154 (502)
+. |+..+|+.+..+.|+|... .+ .-|.|-|+-....+++-++++.||.||.+..|+++
T Consensus 261 NF----------GV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGMkv 330 (528)
T COG4108 261 NF----------GVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGMKV 330 (528)
T ss_pred cc----------CHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccccccCCcee
Confidence 77 8999999999999977421 11 23666677777789999999999999999999999
Q ss_pred EEeecCCCeeEEEEEEEEc----ceecceeecCCeEEEEecCCCccCcccceEEeCCCC
Q psy15224 155 EIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 209 (502)
Q Consensus 155 ~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 209 (502)
... ..++.+++..-+.+ ++.+++|.|||++++. +...++.||+++..+.
T Consensus 331 ~h~--rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~----nhG~~~IGDT~t~Ge~ 383 (528)
T COG4108 331 THV--RTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLH----NHGTIQIGDTFTEGEK 383 (528)
T ss_pred eee--ecCCceEecchHhhhhhhhhhhhhccCCCeEecc----CCCceeecceeecCce
Confidence 875 34566666654433 4679999999999993 4567899999987653
No 75
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.67 E-value=3e-16 Score=124.46 Aligned_cols=86 Identities=72% Similarity=1.212 Sum_probs=80.3
Q ss_pred eeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccc
Q psy15224 122 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERG 201 (502)
Q Consensus 122 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 201 (502)
|+|+|+++|++++.|++++|+|.+|++++||++.++|...+...+|++|+.++.++++|.|||.|+++|++++..++++|
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 68999999999999999999999999999999999986445678999999999999999999999999999888999999
Q ss_pred eEEeCC
Q psy15224 202 QVLAKP 207 (502)
Q Consensus 202 ~vl~~~ 207 (502)
++|+++
T Consensus 81 ~vl~~~ 86 (87)
T cd03697 81 MVLAKP 86 (87)
T ss_pred cEEecC
Confidence 999875
No 76
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.65 E-value=1.3e-15 Score=119.39 Aligned_cols=82 Identities=29% Similarity=0.481 Sum_probs=76.6
Q ss_pred CeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCccc
Q psy15224 121 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 200 (502)
Q Consensus 121 p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~ 200 (502)
||+|+|+++|+.. |++++|+|.+|++++||++.++|.+ ..++|++|+.++.++++|.|||.++++|++++..++++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~--~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~ 76 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNK--TQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISP 76 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCC--cEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCC
Confidence 7899999999864 8999999999999999999999853 78999999999999999999999999999999999999
Q ss_pred ceEEeC
Q psy15224 201 GQVLAK 206 (502)
Q Consensus 201 G~vl~~ 206 (502)
|++|++
T Consensus 77 G~vl~~ 82 (82)
T cd04089 77 GFVLCS 82 (82)
T ss_pred CCEEeC
Confidence 999974
No 77
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.63 E-value=9.4e-15 Score=162.02 Aligned_cols=202 Identities=17% Similarity=0.244 Sum_probs=138.8
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC-------Ch--HHHHHHHHHHHHHHHhhcC
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV-------DD--EELLELVEIEIRELLNKYE 71 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~-------~~--~~~~~~i~~~i~~~l~~~~ 71 (502)
|.+|++.+|+|||||||.+|+..||+.++..+...++|.+++ +||||+. .. ...++.+.+++..++..++
T Consensus 115 ~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~-iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~ 193 (843)
T PLN00116 115 VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLT-VNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYE 193 (843)
T ss_pred HHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEE-EECCcccchhhcCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457899999999999999999999999999999999997666 9999998 21 2456777777764433322
Q ss_pred --------CCCCCCeEEEcccccccc------------------------------------------------------
Q psy15224 72 --------FPGNDIPIIKGSAKLALE------------------------------------------------------ 89 (502)
Q Consensus 72 --------~~~~~~~ii~iSa~~g~~------------------------------------------------------ 89 (502)
+.+..-.+++.|+..|+.
T Consensus 194 ~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~~~~~~~~~~~~~~~~~f~~ 273 (843)
T PLN00116 194 DPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSPTCKRGFVQ 273 (843)
T ss_pred ccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCCceEEecCCCCchhhHHHHH
Confidence 111111223333322210
Q ss_pred --------------------------C---C------------------CCCCCcccHHHHHHHHhhcCCCCCC------
Q psy15224 90 --------------------------G---D------------------TGPLGEQSILSLSKALDTYIPTPNR------ 116 (502)
Q Consensus 90 --------------------------~---~------------------~~w~~~~~i~~Ll~~l~~~~p~~~~------ 116 (502)
. . .+|+. +...||+.+.+++|+|..
T Consensus 274 ~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~--~s~~Lld~i~~~lPsP~~~~~~~~ 351 (843)
T PLN00116 274 FCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLP--ASDALLEMIIFHLPSPAKAQRYRV 351 (843)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcC--ChHHHHHHHHHhCCChHHhhhHHh
Confidence 0 0 12332 225678888888887731
Q ss_pred -------------------CCCCCeeEEEeEEEeeCCCeE-EEEEEEEEeeeecCCEEEEeecCC--Cee-----EEEEE
Q psy15224 117 -------------------AIDGAFLLPVEDVFSISGRGT-VVTGRVERGIVRVGEELEIIGIKD--TVK-----TTCTG 169 (502)
Q Consensus 117 -------------------~~~~p~~~~v~~~~~~~~~G~-v~~g~v~sG~l~~gd~v~i~p~~~--~~~-----~~V~~ 169 (502)
+.+.|+...|++++..++.|. ++++||+||+|+.||.|++.+.+. +.. .+|..
T Consensus 352 ~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~ 431 (843)
T PLN00116 352 ENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGPNYVPGEKKDLYVKSVQR 431 (843)
T ss_pred hhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCCCCCCCCccccceeEhhe
Confidence 124588999999988887787 899999999999999998764322 111 35666
Q ss_pred EEEcc----eecceeecCCeEEEEecCCCccCcccceEEeCCC
Q psy15224 170 VEMFR----KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 208 (502)
Q Consensus 170 i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 208 (502)
|+..+ .+++++.|||++++ .|++ ..+..|++|++..
T Consensus 432 l~~~~g~~~~~v~~~~AGdI~ai--~gl~-~~~~~gdTL~~~~ 471 (843)
T PLN00116 432 TVIWMGKKQESVEDVPCGNTVAM--VGLD-QFITKNATLTNEK 471 (843)
T ss_pred EEEecCCCceECcEECCCCEEEE--Eeec-ccccCCceecCCc
Confidence 66553 67999999999999 4432 2345588997655
No 78
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.62 E-value=3.4e-15 Score=121.31 Aligned_cols=88 Identities=24% Similarity=0.441 Sum_probs=77.3
Q ss_pred CCcccEEEEEEEEeecCCCCCCcccccCCeeEEEeeeeeEEEEEEcc-----C-C--CccccCCCEEEEEEEeCceEecc
Q psy15224 210 IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-----K-N--KEMVMPGDNVLITVRLINPIAME 281 (502)
Q Consensus 210 ~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----~-~--~~~~~~~~~~~v~~~~~~pi~~~ 281 (502)
+.+++.|+|++.+|+++ +++.+||++.+|+++.+++|++..+ . + ++++++||.|.|+|++++|+|++
T Consensus 2 ~k~~~~f~A~v~vl~~~-----~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~~~~~~p~~l~~g~~a~v~l~~~~pi~ve 76 (99)
T PF03143_consen 2 IKAVNRFEAQVIVLDHP-----KPISPGYQPVLHIHTADVPCRIVKIISKIDTGKKKPKFLKPGDRAVVELEFQKPICVE 76 (99)
T ss_dssp SEEEEEEEEEEEESSGS-----S-BETTEEEEEEETTEEEEEEEEEEEEEESTTTEE-SEB-TTEEEEEEEEEEEEEEET
T ss_pred CcccCEEEEEEEEEcCC-----ccccCCCccceEEeeceeeEEEEeeeeccccccccccccccccccccceeeccceeee
Confidence 35678999999999985 7999999999999999999987644 2 2 37899999999999999999999
Q ss_pred cCCeEEEEeCCeEEEEEEEee
Q psy15224 282 EGLRFAIREGVQQFIQDNLLT 302 (502)
Q Consensus 282 ~~~r~ilr~~~~~ig~G~i~~ 302 (502)
+++||+||++|+|+|+|.|++
T Consensus 77 ~~~Rf~lR~~~~Tia~G~V~~ 97 (99)
T PF03143_consen 77 PFSRFILRDGGKTIAVGVVTK 97 (99)
T ss_dssp TTTEEEEEETTEEEEEEEEEE
T ss_pred cCceEEEccCCeEEEEEEEEE
Confidence 999999999999999999974
No 79
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.60 E-value=6.4e-15 Score=115.90 Aligned_cols=83 Identities=40% Similarity=0.735 Sum_probs=77.9
Q ss_pred eeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccc
Q psy15224 122 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERG 201 (502)
Q Consensus 122 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 201 (502)
|+|+|+++|++++.|++++|+|.+|++++||++.++|.+ ...+|++|+.++.++++|.|||.|+++|++++..++++|
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~--~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G 78 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG--EETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERG 78 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC--ceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCc
Confidence 689999999999999999999999999999999999853 689999999999999999999999999999888899999
Q ss_pred eEEeC
Q psy15224 202 QVLAK 206 (502)
Q Consensus 202 ~vl~~ 206 (502)
++|+.
T Consensus 79 ~vl~~ 83 (83)
T cd03696 79 DVLSS 83 (83)
T ss_pred cEEcC
Confidence 99873
No 80
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.60 E-value=1.7e-14 Score=116.11 Aligned_cols=90 Identities=41% Similarity=0.763 Sum_probs=82.8
Q ss_pred ccEEEEEEEEeecCCCCCCcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEeCC
Q psy15224 213 HKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGV 292 (502)
Q Consensus 213 ~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~~ 292 (502)
+..|+|++.+|++.++++.++|..||++.+|+++.++.|++..++++..+.+|+.+.|+|++.+|+++++++||+||+++
T Consensus 3 ~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~g~~~~v~i~l~~p~~~~~g~rf~lR~~~ 82 (93)
T cd03706 3 HDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLPPGKEMVMPGEDTKVTLILRRPMVLEKGQRFTLRDGN 82 (93)
T ss_pred ceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECCCCCcEeCCCCEEEEEEEECCcEEEeeCCEEEEEECC
Confidence 57899999999986555567999999999999999999999988777889999999999999999999999999999999
Q ss_pred eEEEEEEEee
Q psy15224 293 QQFIQDNLLT 302 (502)
Q Consensus 293 ~~ig~G~i~~ 302 (502)
+|+|+|.|++
T Consensus 83 ~tvg~G~V~~ 92 (93)
T cd03706 83 RTIGTGLVTD 92 (93)
T ss_pred EEEEEEEEEe
Confidence 9999999974
No 81
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.59 E-value=5.6e-15 Score=135.65 Aligned_cols=100 Identities=44% Similarity=0.609 Sum_probs=84.3
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHH-HHHhhcCCCC-CCCe
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIR-ELLNKYEFPG-NDIP 78 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~-~~l~~~~~~~-~~~~ 78 (502)
|++|+..+|+|||||||.+|+.+||++|+.++..+++| +|+|+||||+. +..++++.+++. .+++..++.+ ..+|
T Consensus 87 ~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 163 (188)
T PF00009_consen 87 MIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI--EKELEEIIEEIKEKLLKEYGENGEEIVP 163 (188)
T ss_dssp HHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS--HHHHHHHHHHHHHHHHHHTTSTTTSTEE
T ss_pred ccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccch--hhhHHHHHHHHHHHhccccccCccccce
Confidence 45788999999999999999999999999999999999 55559999999 355666777777 6668887765 4789
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
++|+||++|. ++.+|++.|.+++|+
T Consensus 164 vi~~Sa~~g~----------gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 164 VIPISALTGD----------GIDELLEALVELLPS 188 (188)
T ss_dssp EEEEBTTTTB----------THHHHHHHHHHHS--
T ss_pred EEEEecCCCC----------CHHHHHHHHHHhCcC
Confidence 9999999998 999999999998874
No 82
>PTZ00416 elongation factor 2; Provisional
Probab=99.59 E-value=4.9e-14 Score=156.04 Aligned_cols=203 Identities=18% Similarity=0.261 Sum_probs=139.1
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC----C--h---HHHHHHHHHHHHHHHhhc--
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV----D--D---EELLELVEIEIRELLNKY-- 70 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~----~--~---~~~~~~i~~~i~~~l~~~-- 70 (502)
.+|+..+|+||+||||.+|+..||++++..+...++|.+++ +||||+. . . ...+..+.+++...+..+
T Consensus 110 ~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~-iNK~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~~~~~ 188 (836)
T PTZ00416 110 TAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLF-INKVDRAILELQLDPEEIYQNFVKTIENVNVIIATYND 188 (836)
T ss_pred HHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEE-EEChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46788999999999999999999999999999999997666 9999997 2 1 245677777777766532
Q ss_pred ------CCCCCCCeEEEcccccccc---------------C------CCCC---C-C-----------------------
Q psy15224 71 ------EFPGNDIPIIKGSAKLALE---------------G------DTGP---L-G----------------------- 96 (502)
Q Consensus 71 ------~~~~~~~~ii~iSa~~g~~---------------~------~~~w---~-~----------------------- 96 (502)
.+......+...|+..|+. . ...| | .
T Consensus 189 ~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 268 (836)
T PTZ00416 189 ELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIKDETNAQGKKLKRAFC 268 (836)
T ss_pred ccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEEeccCCccccccchHHH
Confidence 1121112233334432110 0 0001 0 0
Q ss_pred -----------------------------c------------------------ccHHHHHHHHhhcCCCCCC-------
Q psy15224 97 -----------------------------E------------------------QSILSLSKALDTYIPTPNR------- 116 (502)
Q Consensus 97 -----------------------------~------------------------~~i~~Ll~~l~~~~p~~~~------- 116 (502)
+ +-+..|++.+.+++|+|..
T Consensus 269 ~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~ 348 (836)
T PTZ00416 269 QFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTLLEMIVDHLPSPKEAQKYRVE 348 (836)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHHHHHHHHhCCChhHhCchhhh
Confidence 0 0114577788888887731
Q ss_pred ------------------CCCCCeeEEEeEEEeeCCCeE-EEEEEEEEeeeecCCEEEEeecCCC--ee-----EEEEEE
Q psy15224 117 ------------------AIDGAFLLPVEDVFSISGRGT-VVTGRVERGIVRVGEELEIIGIKDT--VK-----TTCTGV 170 (502)
Q Consensus 117 ------------------~~~~p~~~~v~~~~~~~~~G~-v~~g~v~sG~l~~gd~v~i~p~~~~--~~-----~~V~~i 170 (502)
+.+.|+...|+++...++.|. ++++||+||+|+.||+|++.+.+.. .+ .+|..|
T Consensus 349 ~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l 428 (836)
T PTZ00416 349 NLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRT 428 (836)
T ss_pred ccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCCCCCcccchheeccee
Confidence 123578899999998888898 7999999999999999987653321 11 236677
Q ss_pred EEcc----eecceeecCCeEEEEecCCCccCcccceEEeCCC
Q psy15224 171 EMFR----KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 208 (502)
Q Consensus 171 ~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 208 (502)
+..+ .+++++.||+++++ .|++....+.| +|++..
T Consensus 429 ~~~~g~~~~~v~~v~AGdI~~i--~gl~~~~~~tg-TL~~~~ 467 (836)
T PTZ00416 429 VLMMGRYVEQIEDVPCGNTVGL--VGVDQYLVKSG-TITTSE 467 (836)
T ss_pred EEecCCCceECcEECCCCEEEE--Eecccceecce-eecCCC
Confidence 6654 58999999999999 45443336788 887655
No 83
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.57 E-value=2.7e-14 Score=111.31 Aligned_cols=81 Identities=28% Similarity=0.474 Sum_probs=74.7
Q ss_pred eeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccc
Q psy15224 122 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERG 201 (502)
Q Consensus 122 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 201 (502)
|||+|+++|+.++.|+.++|+|++|++++||++.++|. +..++|++|+.++.+++.|.|||+|+++|+ +..++++|
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~--~~~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G 76 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPS--GKTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRG 76 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCC--CCeEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCC
Confidence 68999999998888888999999999999999999985 478999999999999999999999999998 46889999
Q ss_pred eEEeC
Q psy15224 202 QVLAK 206 (502)
Q Consensus 202 ~vl~~ 206 (502)
++|+.
T Consensus 77 ~vl~~ 81 (81)
T cd03695 77 DVIVA 81 (81)
T ss_pred CEEeC
Confidence 99973
No 84
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.55 E-value=5.9e-14 Score=112.28 Aligned_cols=88 Identities=67% Similarity=1.121 Sum_probs=80.8
Q ss_pred ccEEEEEEEEeecCCCCCCcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEeCC
Q psy15224 213 HKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGV 292 (502)
Q Consensus 213 ~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~~ 292 (502)
+..|+|++.++++.++++..++..||++++|+++.++.|++....++..+.+|+.+.|+|.+.+|+++++++||+||+++
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~~~~~i~~g~~~~v~l~l~~pv~~~~~~rf~lR~~~ 82 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPEGTEMVMPGDNVKMTVELIHPIALEKGLRFAIREGG 82 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccCcccccCCCCEEEEEEEECCcEEEecCCEEEEecCC
Confidence 57899999999986444457899999999999999999999988888889999999999999999999999999999999
Q ss_pred eEEEEEEE
Q psy15224 293 QQFIQDNL 300 (502)
Q Consensus 293 ~~ig~G~i 300 (502)
+|+|+|.|
T Consensus 83 ~tig~G~V 90 (90)
T cd03707 83 RTVGAGVI 90 (90)
T ss_pred cEEEEEEC
Confidence 99999975
No 85
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.53 E-value=1.1e-13 Score=114.70 Aligned_cols=85 Identities=20% Similarity=0.277 Sum_probs=76.0
Q ss_pred ccEEEEEEEEeecCCCCCCcccccCCeeEEEeeeeeEEEEEEc-------------cCCCccccCCCEEEEEEEeCceEe
Q psy15224 213 HKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIEL-------------PKNKEMVMPGDNVLITVRLINPIA 279 (502)
Q Consensus 213 ~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~-------------~~~~~~~~~~~~~~v~~~~~~pi~ 279 (502)
+..|+|++.||+++ +.+|.+||++.+|+++.+++|++.. .++++++.+|+.+.|+|++.+|+|
T Consensus 3 ~~~F~A~i~vl~~~----~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~ 78 (108)
T cd03704 3 VTEFEAQIAILELK----RSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPIC 78 (108)
T ss_pred ccEEEEEEEEEeCC----CCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEE
Confidence 57899999999975 2478999999999999999999862 125679999999999999999999
Q ss_pred cccC------CeEEEEeCCeEEEEEEEe
Q psy15224 280 MEEG------LRFAIREGVQQFIQDNLL 301 (502)
Q Consensus 280 ~~~~------~r~ilr~~~~~ig~G~i~ 301 (502)
++.+ +||+||++|+|+|+|.|+
T Consensus 79 ~e~~~~~~~lGRf~lR~~g~Tva~G~V~ 106 (108)
T cd03704 79 LEKFEDFPQLGRFTLRDEGKTIAIGKVL 106 (108)
T ss_pred EEEcccCCCcccEEEEeCCCEEEEEEEE
Confidence 9998 899999999999999985
No 86
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.52 E-value=6.8e-14 Score=131.58 Aligned_cols=107 Identities=36% Similarity=0.390 Sum_probs=88.4
Q ss_pred ccccccCCEEEEEEECCC-------CCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC--h-HHHHHHHHHHHHHHHhhcC
Q psy15224 2 ITGAAQMDGAILVCSAAD-------GPMPQTREHILLARQVGVPYIVVFLNKADMVD--D-EELLELVEIEIRELLNKYE 71 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~-------g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~--~-~~~~~~i~~~i~~~l~~~~ 71 (502)
+.+++.+|++++||||.+ +...|+.+|+..+..++++++|+++||||+.. + ++.++.+.+++..+++.++
T Consensus 95 ~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~ 174 (219)
T cd01883 95 ITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVG 174 (219)
T ss_pred HHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcC
Confidence 457889999999999998 57789999999998899877887899999983 2 4567888888888898888
Q ss_pred CCCCCCeEEEccccccccC-----CCCCCCcccHHHHHHHHhhcC
Q psy15224 72 FPGNDIPIIKGSAKLALEG-----DTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~-----~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+....+|++|+||++|.|. .++||.| ..|+++|....
T Consensus 175 ~~~~~~~ii~iSA~tg~gi~~~~~~~~w~~g---~~l~~~l~~~~ 216 (219)
T cd01883 175 YNPKDVPFIPISGLTGDNLIEKSENMPWYKG---PTLLEALDSLE 216 (219)
T ss_pred CCcCCceEEEeecCcCCCCCcCCCCCCCccC---CcHHHHHhCCC
Confidence 7666789999999999874 4689987 46777777643
No 87
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.50 E-value=2.2e-13 Score=112.25 Aligned_cols=84 Identities=20% Similarity=0.297 Sum_probs=75.3
Q ss_pred cccEEEEEEEEeecCCCCCCcccccCCeeEEEeeeeeEEEEEEcc-------------CCCccccCCCEEEEEEEeCceE
Q psy15224 212 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVRLINPI 278 (502)
Q Consensus 212 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~~~~~~~~~v~~~~~~pi 278 (502)
.+..|+|++.||+++ .|+.+||++.+|+++.+++|++..+ +++.++.+|+.+.|+|.+.+|+
T Consensus 2 ~~~~f~A~v~~l~~~-----~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi 76 (104)
T cd03705 2 VAESFTAQVIVLNHP-----GQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPL 76 (104)
T ss_pred cccEEEEEEEEECCC-----CcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCee
Confidence 357899999999975 5899999999999999999998732 2457899999999999999999
Q ss_pred ecccC------CeEEEEeCCeEEEEEEE
Q psy15224 279 AMEEG------LRFAIREGVQQFIQDNL 300 (502)
Q Consensus 279 ~~~~~------~r~ilr~~~~~ig~G~i 300 (502)
|++++ +||+|||+|.|+|+|.|
T Consensus 77 ~~e~~~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 77 VVETFSEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred EEEEcccCCCccCEEEEeCCCEEEEEEC
Confidence 99997 89999999999999986
No 88
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.48 E-value=2.2e-13 Score=127.12 Aligned_cols=103 Identities=32% Similarity=0.366 Sum_probs=84.5
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+.++..+|++++|+|+.+|+..|+++++.++...+++.+|+++||||+.++ ++.++.+..++..+++.+++. ..+++
T Consensus 95 ~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~ii 172 (208)
T cd04166 95 VTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIE--DITFI 172 (208)
T ss_pred HHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCC--CceEE
Confidence 457789999999999999999999999999999998877777999999864 456677778888888888764 36799
Q ss_pred EccccccccC-----CCCCCCcccHHHHHHHHhh
Q psy15224 81 KGSAKLALEG-----DTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 81 ~iSa~~g~~~-----~~~w~~~~~i~~Ll~~l~~ 109 (502)
++||++|.|. .++||.|++ |+++|+.
T Consensus 173 ~iSA~~g~ni~~~~~~~~w~~g~~---~~~~~~~ 203 (208)
T cd04166 173 PISALDGDNVVSRSENMPWYSGPT---LLEHLET 203 (208)
T ss_pred EEeCCCCCCCccCCCCCCCCCCCc---HHHHHhc
Confidence 9999999873 468998865 5555554
No 89
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.47 E-value=5.9e-13 Score=110.28 Aligned_cols=86 Identities=15% Similarity=0.265 Sum_probs=76.1
Q ss_pred cccEEEEEEEEeecCCCCCCcccccCCeeEEEeeeeeEEEEEEcc-------------CCCccccCCCEEEEEEEeCceE
Q psy15224 212 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVRLINPI 278 (502)
Q Consensus 212 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~~~~~~~~~v~~~~~~pi 278 (502)
.+..|+|+++|++++ .||.+||++.+|+++..++|++..+ +++..+++||.+.|+|.+.+|+
T Consensus 2 ~~~~f~A~v~~l~~~-----~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi 76 (107)
T cd04093 2 SSTRFEARILTFNVD-----KPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPI 76 (107)
T ss_pred cccEEEEEEEEECCC-----cccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeE
Confidence 357899999999975 5899999999999999999988621 2457899999999999999999
Q ss_pred ecccC------CeEEEEeCCeEEEEEEEee
Q psy15224 279 AMEEG------LRFAIREGVQQFIQDNLLT 302 (502)
Q Consensus 279 ~~~~~------~r~ilr~~~~~ig~G~i~~ 302 (502)
|++++ +||+||++|.|+|+|.|.+
T Consensus 77 ~~e~~~~~~~~Grfilr~~~~Tva~G~I~~ 106 (107)
T cd04093 77 PLELFKDNKELGRVVLRRDGETIAAGLVTE 106 (107)
T ss_pred EEEEcccCCCcceEEEEcCCCEEEEEEEEe
Confidence 99997 7999999999999999963
No 90
>KOG1144|consensus
Probab=99.46 E-value=1.8e-13 Score=140.48 Aligned_cols=166 Identities=24% Similarity=0.251 Sum_probs=117.9
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC-h-----HHH--------------HHHHHHH
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD-D-----EEL--------------LELVEIE 62 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~-~-----~~~--------------~~~i~~~ 62 (502)
.|.+.||+||||||..+|+.+||.|.+.+++..+.| ||||+||+|+.- | ... |+.-.+.
T Consensus 559 rgsslC~~aIlvvdImhGlepqtiESi~lLR~rktp-FivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ 637 (1064)
T KOG1144|consen 559 RGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTP-FIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNN 637 (1064)
T ss_pred ccccccceEEEEeehhccCCcchhHHHHHHHhcCCC-eEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999 566799999741 1 001 1111111
Q ss_pred HHHHHhhcC------CC----CCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCC---CCCCCCCCeeEEEeEE
Q psy15224 63 IRELLNKYE------FP----GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT---PNRAIDGAFLLPVEDV 129 (502)
Q Consensus 63 i~~~l~~~~------~~----~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~---~~~~~~~p~~~~v~~~ 129 (502)
+..-|..-| |. +..+.++|.||.+|. |+.+|+-+|.++... ..-..-..+...|.++
T Consensus 638 ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGe----------GipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEV 707 (1064)
T KOG1144|consen 638 IIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGE----------GIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEV 707 (1064)
T ss_pred HHHHHHHcccchhheeecccccceEEeeecccccCC----------CcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEE
Confidence 111122222 22 235678999999987 888888887664221 1111234567889999
Q ss_pred EeeCCCeEEEEEEEEEeeeecCCEEEEeecCCC--------------eeEEEEEEEEcceecce
Q psy15224 130 FSISGRGTVVTGRVERGIVRVGEELEIIGIKDT--------------VKTTCTGVEMFRKLLDQ 179 (502)
Q Consensus 130 ~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~--------------~~~~V~~i~~~~~~v~~ 179 (502)
-.+.|.|+++-.-+..|.|+.||.+.+++..+. ...+|++-|.++..+..
T Consensus 708 KvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvka 771 (1064)
T KOG1144|consen 708 KVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKA 771 (1064)
T ss_pred EeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhh
Confidence 999999999999999999999999999976542 23567777777655443
No 91
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.46 E-value=6.6e-13 Score=105.55 Aligned_cols=84 Identities=23% Similarity=0.338 Sum_probs=75.5
Q ss_pred cccEEEEEEEEeecCCCCCCcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEe-CceEecccCCeEEEEe
Q psy15224 212 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRL-INPIAMEEGLRFAIRE 290 (502)
Q Consensus 212 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~-~~pi~~~~~~r~ilr~ 290 (502)
+++.|+|++.|++++ +++.+||++.+|+++.+++|++..+.. ..+.+||.+.|+++| .+|+|+++++||+||+
T Consensus 2 ~~~~f~A~i~il~~~-----~~i~~Gy~~~l~~~t~~~~~~i~~i~~-~~l~~g~~~~v~i~f~~~p~~~e~~grf~lr~ 75 (87)
T cd03708 2 ACWEFEAEILVLHHP-----TTISPGYQATVHIGSIRQTARIVSIDK-DVLRTGDRALVRFRFLYHPEYLREGQRLIFRE 75 (87)
T ss_pred ceeEEEEEEEEEcCC-----CcccCCCEeEEEEcCCEEEEEEEeccH-hhccCCCeEEEEEEECCCCcEEccCCeEEEEC
Confidence 467899999999975 689999999999999999999986554 789999999999996 7999999999999987
Q ss_pred CCeEEEEEEEee
Q psy15224 291 GVQQFIQDNLLT 302 (502)
Q Consensus 291 ~~~~ig~G~i~~ 302 (502)
+ +|+|+|.|++
T Consensus 76 g-~tva~G~I~~ 86 (87)
T cd03708 76 G-RTKGVGEVTK 86 (87)
T ss_pred C-CcEEEEEEEE
Confidence 7 9999999964
No 92
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.42 E-value=1.4e-12 Score=107.01 Aligned_cols=84 Identities=31% Similarity=0.534 Sum_probs=75.4
Q ss_pred cccEEEEEEEEeecCCCCCCcccccCCeeEEEeeeeeEEEEEEccC-----------CCccccCCCEEEEEEEeCceEec
Q psy15224 212 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPK-----------NKEMVMPGDNVLITVRLINPIAM 280 (502)
Q Consensus 212 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~v~~~~~~pi~~ 280 (502)
++..|+|++.+++++ .||.+||++.+|+++.+++|++..+. ++..+.+|+.+.|+|++.+|+|+
T Consensus 2 ~~~~f~a~i~~l~~~-----~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~~~~~~~~~l~~~~~a~v~l~~~~pi~~ 76 (102)
T cd01513 2 AVDKFVAEIYVLDHP-----EPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKTEEKKPPEFLKSGERGIVEVELQKPVAL 76 (102)
T ss_pred cccEEEEEEEEECCC-----cccCCCCcEEEEeecCEEeEEEEeeeeecccCcccccCchhhcCCCEEEEEEEECCceEE
Confidence 357899999999975 58999999999999999999987543 46789999999999999999999
Q ss_pred c------cCCeEEEEeCCeEEEEEEE
Q psy15224 281 E------EGLRFAIREGVQQFIQDNL 300 (502)
Q Consensus 281 ~------~~~r~ilr~~~~~ig~G~i 300 (502)
+ .++||+||++++|+|+|.|
T Consensus 77 e~~~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 77 ETFSENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred EEhhhCCCcccEEEEeCCCEEEEEEC
Confidence 9 7799999999999999986
No 93
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.42 E-value=3.1e-12 Score=103.66 Aligned_cols=95 Identities=25% Similarity=0.436 Sum_probs=85.3
Q ss_pred ceEEeCCCCCCcccEEEEEEEEeecCCCCCCcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEec
Q psy15224 201 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAM 280 (502)
Q Consensus 201 G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~ 280 (502)
|++++.+++..+...+.+++.++... .+++..++++++|+|+.++.|++...+ .+.+.+|+.+.++++|++|+++
T Consensus 1 G~vl~~~~~~~~~~~~~~~i~~l~~~----~~~l~~~~~v~~~~Gt~~v~~ri~ll~-~~~~~pg~~~~a~l~l~~pl~~ 75 (97)
T cd04094 1 GDVLADPGSLLPTRRLDVRLTVLLSA----PRPLKHRQRVHLHHGTSEVLARVVLLD-RDELAPGEEALAQLRLEEPLVA 75 (97)
T ss_pred CCEEecCCCcCCceEEEEEEEEECCC----CccCCCCCeEEEEeccceEEEEEEeCC-ccccCCCCEEEEEEEECCcEee
Confidence 78999888777789999999998865 257999999999999999999998665 4678999999999999999999
Q ss_pred ccCCeEEEEeCC--eEEEEEEE
Q psy15224 281 EEGLRFAIREGV--QQFIQDNL 300 (502)
Q Consensus 281 ~~~~r~ilr~~~--~~ig~G~i 300 (502)
..++||+||+.+ +|+|+|.|
T Consensus 76 ~~gdrfilR~~~~~~tiggG~V 97 (97)
T cd04094 76 LRGDRFILRSYSPLRTLGGGRV 97 (97)
T ss_pred cCCCeEEEeeCCCCeEEEeEEC
Confidence 999999999998 99999985
No 94
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.29 E-value=2.1e-11 Score=114.57 Aligned_cols=99 Identities=24% Similarity=0.333 Sum_probs=79.0
Q ss_pred ccccc--cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCC------
Q psy15224 2 ITGAA--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP------ 73 (502)
Q Consensus 2 i~g~~--~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~------ 73 (502)
+.|++ .+|++++||||++|+.+||++|+.++..+++|.++ ++||+|+.+. +.++...+++.++++..+..
T Consensus 102 ~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~iv-vvNK~D~~~~-~~~~~~~~~l~~~L~~~g~~~~p~~~ 179 (224)
T cd04165 102 LFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFV-VVTKIDLAPA-NILQETLKDLKRILKVPGVRKLPVPV 179 (224)
T ss_pred HHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEE-EEECccccCH-HHHHHHHHHHHHHhcCCCccccceee
Confidence 44554 79999999999999999999999999999999655 5999999874 56677777888887643322
Q ss_pred ---------------CCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 74 ---------------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 74 ---------------~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
....|++++|+.+|. |++.|++.|.. +|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~pi~~vSavtg~----------Gi~~L~~~L~~-lp~ 223 (224)
T cd04165 180 KSDDDVVLAASNFSSERIVPIFQVSNVTGE----------GLDLLHAFLNL-LPL 223 (224)
T ss_pred ecccceeehhhcCCccccCcEEEeeCCCcc----------CHHHHHHHHHh-cCC
Confidence 124599999999997 88888887765 664
No 95
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.27 E-value=3.3e-11 Score=98.95 Aligned_cols=83 Identities=11% Similarity=0.123 Sum_probs=71.6
Q ss_pred cccEEEEEEEEeecCCCCCCcccccCCeeEEEeeeeeEEEEEEcc-----------CCCccccCCCEEEEEEEeCceEec
Q psy15224 212 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-----------KNKEMVMPGDNVLITVRLINPIAM 280 (502)
Q Consensus 212 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~~~~~~v~~~~~~pi~~ 280 (502)
.+..|+|++.|++. .|+.+|+++.+|+++...+|++..+ ..+.++..|+.+.|+|++++|+|+
T Consensus 2 ~~~~f~a~i~~l~~------~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~~~~~~l~~n~~a~v~i~~~~pi~~ 75 (103)
T cd04095 2 VSDQFAATLVWMDE------EPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEHEAADTLELNDIGRVELSLSKPLAF 75 (103)
T ss_pred ccceeeEEEEEecC------cccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCccCCCEECCCCeEEEEEEeCCccEe
Confidence 35789999999995 3799999999999999999988622 246789999999999999999999
Q ss_pred ccC------CeEEEE--eCCeEEEEEEE
Q psy15224 281 EEG------LRFAIR--EGVQQFIQDNL 300 (502)
Q Consensus 281 ~~~------~r~ilr--~~~~~ig~G~i 300 (502)
+++ +||+|+ ++|.|+|+|.|
T Consensus 76 d~~~~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 76 DPYRENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred cchhhCCCcceEEEEECCCCcEEEEEeC
Confidence 986 799994 56899999985
No 96
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.26 E-value=7.4e-11 Score=94.67 Aligned_cols=90 Identities=24% Similarity=0.327 Sum_probs=78.0
Q ss_pred CCCCeeEEEeEEEeeC--------CCeEEEEEEEEEeeeecCCEEEEeecCC----------CeeEEEEEEEEcceecce
Q psy15224 118 IDGAFLLPVEDVFSIS--------GRGTVVTGRVERGIVRVGEELEIIGIKD----------TVKTTCTGVEMFRKLLDQ 179 (502)
Q Consensus 118 ~~~p~~~~v~~~~~~~--------~~G~v~~g~v~sG~l~~gd~v~i~p~~~----------~~~~~V~~i~~~~~~v~~ 179 (502)
.+.|++|+|.++|.+. .+|.|+.|++.+|.|++||++.|.|.-. ....+|.||+..+..+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 4679999999999988 8999999999999999999999997411 135789999999999999
Q ss_pred eecCCeEEE---EecCCCccCcccceEEeCC
Q psy15224 180 GQAGDNIGL---LLRGTKREDVERGQVLAKP 207 (502)
Q Consensus 180 a~aG~~v~l---~l~~~~~~~i~~G~vl~~~ 207 (502)
|.||+.+++ -..+++..|..+|+|++.+
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEeecC
Confidence 999999999 3456777899999999864
No 97
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.26 E-value=3.6e-11 Score=111.73 Aligned_cols=102 Identities=35% Similarity=0.479 Sum_probs=80.1
Q ss_pred CccccccCCEEEEEEECCC-CCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 1 MITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~-g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
|+.+++.+|++++|+|+.+ +...|+.+++..+...+++++++++||+|+.+. ..+....+++.++++.... ...++
T Consensus 100 ~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~-~~~~~~~~~i~~~~~~~~~--~~~~i 176 (203)
T cd01888 100 MLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE-EQALENYEQIKKFVKGTIA--ENAPI 176 (203)
T ss_pred HHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH-HHHHHHHHHHHHHHhcccc--CCCcE
Confidence 3567889999999999998 478899999999988888767777999999874 3334444556666654322 24689
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCCCCC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN 115 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~ 115 (502)
+++||++|. ++.+|++.|.+.+|.|.
T Consensus 177 ~~vSA~~g~----------gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 177 IPISAQLKY----------NIDVLLEYIVKKIPTPP 202 (203)
T ss_pred EEEeCCCCC----------CHHHHHHHHHHhCCCCC
Confidence 999999987 89999999999887653
No 98
>KOG0469|consensus
Probab=99.21 E-value=3.3e-11 Score=119.17 Aligned_cols=198 Identities=21% Similarity=0.251 Sum_probs=135.8
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC------ChHHHH---HHHHHHHHHHHhhcCCC
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV------DDEELL---ELVEIEIRELLNKYEFP 73 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~------~~~~~~---~~i~~~i~~~l~~~~~~ 73 (502)
+++...|.|++|||+.+|+.-||+..|..+....++.+++ +||||+. +.++.+ +.+++.+...+..++..
T Consensus 117 AALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv-~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~ 195 (842)
T KOG0469|consen 117 AALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLV-MNKMDRALLELQLSQEELYQTFQRIVENVNVIISTYGDG 195 (842)
T ss_pred heeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEE-eehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccC
Confidence 5778899999999999999999999999999999988777 9999973 223333 33333333233333321
Q ss_pred --------CCCCeEEEccccccccCC---------------------------------CCCCCc---------------
Q psy15224 74 --------GNDIPIIKGSAKLALEGD---------------------------------TGPLGE--------------- 97 (502)
Q Consensus 74 --------~~~~~ii~iSa~~g~~~~---------------------------------~~w~~~--------------- 97 (502)
+..-.+-+.|+++|+.-. .+|.+.
T Consensus 196 ~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~ 275 (842)
T KOG0469|consen 196 PMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCM 275 (842)
T ss_pred CcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCccCCcccccccccccCccccceeE
Confidence 122234567888876510 012100
Q ss_pred -----------------------------------------------------ccHHHHHHHHhhcCCCC----------
Q psy15224 98 -----------------------------------------------------QSILSLSKALDTYIPTP---------- 114 (502)
Q Consensus 98 -----------------------------------------------------~~i~~Ll~~l~~~~p~~---------- 114 (502)
+..+.||+.|.-++|+|
T Consensus 276 ~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~ 355 (842)
T KOG0469|consen 276 FILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEY 355 (842)
T ss_pred EeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 22245777777777765
Q ss_pred ---------------CCCCCCCeeEEEeEEEeeCCCeE-EEEEEEEEeeeecCCEEEEeecCC--Ce--eEEEEEEEE--
Q psy15224 115 ---------------NRAIDGAFLLPVEDVFSISGRGT-VVTGRVERGIVRVGEELEIIGIKD--TV--KTTCTGVEM-- 172 (502)
Q Consensus 115 ---------------~~~~~~p~~~~v~~~~~~~~~G~-v~~g~v~sG~l~~gd~v~i~p~~~--~~--~~~V~~i~~-- 172 (502)
.++.+.|+.|+|++....+..|+ .++|||+||++..|.++.+.+.+. +. ..-+++|++
T Consensus 356 LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtv 435 (842)
T KOG0469|consen 356 LYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTV 435 (842)
T ss_pred hhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHH
Confidence 25567899999999999888876 688999999999999999985432 11 222344442
Q ss_pred -----cceecceeecCCeEEEEecCCCccCcccceE
Q psy15224 173 -----FRKLLDQGQAGDNIGLLLRGTKREDVERGQV 203 (502)
Q Consensus 173 -----~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 203 (502)
+-++++.+.+|+++++ -|++.--++.|.+
T Consensus 436 lMMGr~vepied~PaGNIiGl--vGvDqfLvKtGTi 469 (842)
T KOG0469|consen 436 LMMGRFVEPIEDCPAGNIIGL--VGVDQFLVKTGTI 469 (842)
T ss_pred HHhcccccccccCCCCcEEEE--eehhHhhhccCce
Confidence 2368999999999999 6777666777744
No 99
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.16 E-value=5.4e-10 Score=87.72 Aligned_cols=80 Identities=18% Similarity=0.350 Sum_probs=70.7
Q ss_pred EEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCC-CeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccce
Q psy15224 124 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD-TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQ 202 (502)
Q Consensus 124 ~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~-~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 202 (502)
..|.++|++++.|+++.|+|.+|++++|+.+.++|.+. ....+|+||+.+++++++|.+|+.|++.|++.+ ++++||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence 46889999888899999999999999999999998531 146799999999999999999999999999766 999999
Q ss_pred EEe
Q psy15224 203 VLA 205 (502)
Q Consensus 203 vl~ 205 (502)
+|-
T Consensus 81 vi~ 83 (84)
T cd03692 81 IIE 83 (84)
T ss_pred EEE
Confidence 873
No 100
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.11 E-value=4.5e-10 Score=103.43 Aligned_cols=100 Identities=33% Similarity=0.422 Sum_probs=76.2
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChH---HHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE---ELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~---~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.++..+|++++|+|+.+|...++.+++..+...++|.+++ +||+|+.+.. ...+++.+++...+...++ ...++
T Consensus 87 ~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv-~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~v 163 (192)
T cd01889 87 GGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVV-LNKIDLIPEEERERKIEKMKKKLQKTLEKTRF--KNSPI 163 (192)
T ss_pred HHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEE-EECcccCCHHHHHHHHHHHHHHHHHHHHhcCc--CCCCE
Confidence 4567899999999999999999998888888888885555 9999998642 2233344444444444344 24789
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCCCCC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN 115 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~ 115 (502)
+++||++|. ++.+|++.|...+|+|.
T Consensus 164 i~iSa~~g~----------gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 164 IPVSAKPGG----------GEAELGKDLNNLIVLPL 189 (192)
T ss_pred EEEeccCCC----------CHHHHHHHHHhcccccc
Confidence 999999987 89999999999887763
No 101
>KOG0468|consensus
Probab=99.06 E-value=2.8e-09 Score=109.03 Aligned_cols=203 Identities=22% Similarity=0.223 Sum_probs=132.5
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC------h---HHHHHHHHHHHHHHHhhcC
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD------D---EELLELVEIEIRELLNKYE 71 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~------~---~~~~~~i~~~i~~~l~~~~ 71 (502)
|.++++.+|.|+|+||+.+|++-+|++.++.+-...++ +++||||+|+.- + .-.+..+.+++...+..+.
T Consensus 214 ~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~-i~vviNKiDRLilELkLPP~DAY~KLrHii~~iN~~is~~s 292 (971)
T KOG0468|consen 214 TTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLP-IVVVINKVDRLILELKLPPMDAYYKLRHIIDEINNLISTFS 292 (971)
T ss_pred HHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCc-EEEEEehhHHHHHHhcCChHHHHHHHHHHHHHhcchhhhcc
Confidence 46788999999999999999999999999999999999 455599999731 1 2334566666765554433
Q ss_pred C------CCCCCeEEEccccccccC----------------------CCCC-----------CCc---------------
Q psy15224 72 F------PGNDIPIIKGSAKLALEG----------------------DTGP-----------LGE--------------- 97 (502)
Q Consensus 72 ~------~~~~~~ii~iSa~~g~~~----------------------~~~w-----------~~~--------------- 97 (502)
- .+..-.+++.|+..|..- ...| +.+
T Consensus 293 ~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~~~~rsFVeFI 372 (971)
T KOG0468|consen 293 KDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDGSGSRSFVEFI 372 (971)
T ss_pred cccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccCCCCCcccchhhhhh
Confidence 2 112234566777665430 0134 100
Q ss_pred ----------------ccHHH-----------------------------------HHHHHhhcCCCCC-----------
Q psy15224 98 ----------------QSILS-----------------------------------LSKALDTYIPTPN----------- 115 (502)
Q Consensus 98 ----------------~~i~~-----------------------------------Ll~~l~~~~p~~~----------- 115 (502)
.++.. +.+.+.+++|+|.
T Consensus 373 LePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~~sgfvd~~v~hi~sP~e~a~~K~~hsy 452 (971)
T KOG0468|consen 373 LEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGIESGFVDMPVEHIPSPRENAARKAEHSY 452 (971)
T ss_pred HhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHHHHHhccchhhhhHhhHhhcCChhhhhccccceee
Confidence 00011 2233344454442
Q ss_pred --------------CCCCCCeeEEEeEEEee-CCCeEEEEEEEEEeeeecCCEEEEeecCC-------CeeEEEEEEEEc
Q psy15224 116 --------------RAIDGAFLLPVEDVFSI-SGRGTVVTGRVERGIVRVGEELEIIGIKD-------TVKTTCTGVEMF 173 (502)
Q Consensus 116 --------------~~~~~p~~~~v~~~~~~-~~~G~v~~g~v~sG~l~~gd~v~i~p~~~-------~~~~~V~~i~~~ 173 (502)
+..+.|+...+.+.+.. +..-..++|+++||+++.|+.|.+.+.+. ...+.|..+...
T Consensus 453 ~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny~leDEeD~~~~~v~el~v~ 532 (971)
T KOG0468|consen 453 TGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYSLEDEEDMVICEVGELWVV 532 (971)
T ss_pred cCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEeeccccCCCcccceeeeeeeeeee
Confidence 23456888888888863 33456799999999999999999986542 123555555543
Q ss_pred ----ceecceeecCCeEEEEecCCCccCcccceEEeCC
Q psy15224 174 ----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKP 207 (502)
Q Consensus 174 ----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 207 (502)
+-+++.|.+|.+|-+ .|++...++ -.++++.
T Consensus 533 ~arY~i~V~~~~~G~~VLI--~Gidq~i~K-taTi~~~ 567 (971)
T KOG0468|consen 533 RARYRIPVSRAPAGLWVLI--EGVDQSIVK-TATIKSL 567 (971)
T ss_pred eeeEEEEecccCCCcEEEE--eccchHHhh-hhheecc
Confidence 468999999999998 777654444 3455543
No 102
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.06 E-value=8.2e-10 Score=101.86 Aligned_cols=107 Identities=30% Similarity=0.379 Sum_probs=80.3
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCC--CCeEEE
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN--DIPIIK 81 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~--~~~ii~ 81 (502)
.+..+|++++|+|+.++..+++.+++..+...++|.+++ +||+|+.+. ..+...+++.++++.++...+ ..++++
T Consensus 85 ~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv-~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 161 (194)
T cd01891 85 VLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVV-INKIDRPDA--RPEEVVDEVFDLFIELGATEEQLDFPVLY 161 (194)
T ss_pred HHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEE-EECCCCCCC--CHHHHHHHHHHHHHHhCCccccCccCEEE
Confidence 457899999999999999999998888888889996655 999999753 223445566666655544322 468999
Q ss_pred ccccccccCCCCCC-CcccHHHHHHHHhhcCCCC
Q psy15224 82 GSAKLALEGDTGPL-GEQSILSLSKALDTYIPTP 114 (502)
Q Consensus 82 iSa~~g~~~~~~w~-~~~~i~~Ll~~l~~~~p~~ 114 (502)
+||++|.+.. .|- -.+++.+|++.|.+++|.|
T Consensus 162 ~Sa~~g~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 162 ASAKNGWASL-NLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred eehhcccccc-ccccchhhHHHHHHHHHhcCCCC
Confidence 9999998643 221 1468999999999988864
No 103
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.05 E-value=6.9e-10 Score=103.89 Aligned_cols=110 Identities=20% Similarity=0.211 Sum_probs=82.8
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC------Ch---HHHHHHHHHHHHHHHhhcCC
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV------DD---EELLELVEIEIRELLNKYEF 72 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~------~~---~~~~~~i~~~i~~~l~~~~~ 72 (502)
..++..+|+++||+|+.+|++.||++++..+...++|.+ +++||||+. +. +.++.++.+++..+++.+.-
T Consensus 91 ~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~i-lviNKiD~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~ 169 (222)
T cd01885 91 TAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPV-LVINKIDRLILELKLSPEEAYQRLARIIEQVNAIIGTYAD 169 (222)
T ss_pred HHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCcchhhhcCCHHHHHHHHHHHHHHHhHHHHhccc
Confidence 457889999999999999999999999999999999855 559999986 32 45678888888888876631
Q ss_pred C------CC---CCe----EEEccccccccCCCCCCCcccHHHHHHHHhhcCCCC
Q psy15224 73 P------GN---DIP----IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 114 (502)
Q Consensus 73 ~------~~---~~~----ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~ 114 (502)
. .+ ..| +++.||+.|+..... .-..+-.+++.+.+++|+|
T Consensus 170 ~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~--~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 170 EEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTII--KFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred ccccccCcCCcEEeeCCCcEEEEecccCEEeccc--cccchHHHHHHHHhhCCCC
Confidence 1 00 124 788999988754221 1124567899999988875
No 104
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.02 E-value=1.1e-09 Score=109.25 Aligned_cols=92 Identities=26% Similarity=0.316 Sum_probs=77.9
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
.++..||+++||+||.+|+..|+.+.+.++...|.+.+|+ +||||+++. +..++..+.++...|..++| .|+++
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIv-vNKWDl~~~~~~~~~~~k~~i~~~l~~l~~----a~i~~ 330 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIV-VNKWDLVEEDEATMEEFKKKLRRKLPFLDF----APIVF 330 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEE-EEccccCCchhhHHHHHHHHHHHHhccccC----CeEEE
Confidence 4677899999999999999999999999999999997666 999999885 46777888888888877776 78999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+||++|. ++..|++.+..
T Consensus 331 iSA~~~~----------~i~~l~~~i~~ 348 (444)
T COG1160 331 ISALTGQ----------GLDKLFEAIKE 348 (444)
T ss_pred EEecCCC----------ChHHHHHHHHH
Confidence 9999998 66666666543
No 105
>COG1159 Era GTPase [General function prediction only]
Probab=99.00 E-value=4e-10 Score=106.47 Aligned_cols=110 Identities=20% Similarity=0.274 Sum_probs=86.5
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHH-hhcCCCCCCCeEEE
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELL-NKYEFPGNDIPIIK 81 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l-~~~~~~~~~~~ii~ 81 (502)
.+++.+|++++||||++++.+.++..+..++..+.|.+++ +||+|+.+.+..+. .+.+.+ ....| ..++|
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~-iNKID~~~~~~~l~----~~~~~~~~~~~f----~~ivp 151 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILV-VNKIDKVKPKTVLL----KLIAFLKKLLPF----KEIVP 151 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEE-EEccccCCcHHHHH----HHHHHHHhhCCc----ceEEE
Confidence 4788999999999999999999999999998877897766 99999998733222 222222 22233 47999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcCCC------CCCCCCCCeeEEEeEEEe
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYIPT------PNRAIDGAFLLPVEDVFS 131 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~------~~~~~~~p~~~~v~~~~~ 131 (502)
+||++|. ++..|++.+..++|. ++..+|.|.+|.+.+++|
T Consensus 152 iSA~~g~----------n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiR 197 (298)
T COG1159 152 ISALKGD----------NVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIR 197 (298)
T ss_pred eeccccC----------CHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHH
Confidence 9999998 899999999999983 345678888888888876
No 106
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.99 E-value=4.7e-09 Score=80.55 Aligned_cols=70 Identities=27% Similarity=0.434 Sum_probs=61.4
Q ss_pred eEEEEEEEEEeeeecCCEEEEeecCCCee---EEEEEEEEcceecceeecCCeEEEEecCCCccC-cccceEEe
Q psy15224 136 GTVVTGRVERGIVRVGEELEIIGIKDTVK---TTCTGVEMFRKLLDQGQAGDNIGLLLRGTKRED-VERGQVLA 205 (502)
Q Consensus 136 G~v~~g~v~sG~l~~gd~v~i~p~~~~~~---~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~-i~~G~vl~ 205 (502)
|++++|||+||+|++||++.+.|.....+ .+|++|+.++....++.+|+.+++.+......+ +++||+|+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 78999999999999999999988323344 999999999999999999999999888777788 89999986
No 107
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.95 E-value=5.4e-09 Score=93.12 Aligned_cols=94 Identities=45% Similarity=0.582 Sum_probs=72.0
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
.++..||++++|+|+++++..++.+++..+...+.+.+++++||+|+.+. .......+++.+.++..+. ...+++++
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 146 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE-DWLELVEEEIRELLAGTFL--ADAPIFPV 146 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH-HHHHHHHHHHHHHHHhcCc--CCCcEEEE
Confidence 45678999999999999999999999888888887446666999999874 3333444566666665432 24689999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
||++|. ++.++++.+.+
T Consensus 147 Sa~~~~----------~v~~l~~~l~~ 163 (164)
T cd04171 147 SAVTGE----------GIEELKEYLDE 163 (164)
T ss_pred eCCCCc----------CHHHHHHHHhh
Confidence 999987 88888887754
No 108
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.95 E-value=1.2e-08 Score=79.33 Aligned_cols=82 Identities=33% Similarity=0.554 Sum_probs=71.2
Q ss_pred eeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccc
Q psy15224 122 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERG 201 (502)
Q Consensus 122 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 201 (502)
+++.|.+++.+++.|++++|+|.+|+|++||.+.+.|.......+|++|+.++.+++++.||+.+++.+.. ..+++.|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~--~~~~~~g 78 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKD--KDDIKIG 78 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcc--ccccCCC
Confidence 36789999999999999999999999999999999874334678899999999999999999999998763 3378999
Q ss_pred eEEe
Q psy15224 202 QVLA 205 (502)
Q Consensus 202 ~vl~ 205 (502)
++++
T Consensus 79 ~~l~ 82 (83)
T cd01342 79 DTLT 82 (83)
T ss_pred CEec
Confidence 9885
No 109
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.87 E-value=1.4e-08 Score=92.63 Aligned_cols=99 Identities=45% Similarity=0.647 Sum_probs=77.8
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCC---------CC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF---------PG 74 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~---------~~ 74 (502)
.+..+|++++|+|+.++...++.+++..+...+.|.+++ +||+|+.+. +.+....+++.+.++..+. ..
T Consensus 82 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv-~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (189)
T cd00881 82 GLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVA-INKIDRVGE-EDLEEVLREIKELLGLIGFISTKEEGTRNG 159 (189)
T ss_pred HHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEE-EECCCCcch-hcHHHHHHHHHHHHccccccchhhhhcccC
Confidence 456799999999999999999999998888888885554 999999874 3344455667777765543 22
Q ss_pred CCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCC
Q psy15224 75 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 114 (502)
Q Consensus 75 ~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~ 114 (502)
...+++++||++|. ++.++++.+...+|+|
T Consensus 160 ~~~~v~~~Sa~~g~----------gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 160 LLVPIVPGSALTGI----------GVEELLEAIVEHLPPP 189 (189)
T ss_pred CcceEEEEecccCc----------CHHHHHHHHHhhCCCC
Confidence 35789999999987 8999999999888653
No 110
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.86 E-value=1.2e-08 Score=98.72 Aligned_cols=49 Identities=33% Similarity=0.367 Sum_probs=44.4
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 51 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~ 51 (502)
..++..+|++++||||..|+..||++++..+...++|.+++ +||||+.+
T Consensus 82 ~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivv-iNK~D~~~ 130 (270)
T cd01886 82 ERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAF-VNKMDRTG 130 (270)
T ss_pred HHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEE-EECCCCCC
Confidence 35678899999999999999999999999999999998765 99999975
No 111
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.85 E-value=8e-09 Score=98.06 Aligned_cols=101 Identities=29% Similarity=0.411 Sum_probs=75.7
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh--HHHHHHHHHHHH----------------
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEIR---------------- 64 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~--~~~~~~i~~~i~---------------- 64 (502)
.++..+|++++|+|+.+|+..|+++++..+...++|.+++ +||||+... ++.++++++.+.
T Consensus 83 ~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iiv-vNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~ 161 (237)
T cd04168 83 RSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIF-VNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNIC 161 (237)
T ss_pred HHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEE-EECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeeee
Confidence 4677899999999999999999999999999999997765 999999752 344443333221
Q ss_pred ----------------------HHHh--------------hcCCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHh
Q psy15224 65 ----------------------ELLN--------------KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 108 (502)
Q Consensus 65 ----------------------~~l~--------------~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~ 108 (502)
.+|. ..-..+..+|+++.||.++. |+..||+.+.
T Consensus 162 ~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~----------Gv~~ll~~~~ 231 (237)
T cd04168 162 ETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGI----------GIEELLEGIT 231 (237)
T ss_pred eeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCc----------CHHHHHHHHH
Confidence 0110 00012345789999999987 9999999999
Q ss_pred hcCCCC
Q psy15224 109 TYIPTP 114 (502)
Q Consensus 109 ~~~p~~ 114 (502)
.++|+|
T Consensus 232 ~~~p~~ 237 (237)
T cd04168 232 KLFPTS 237 (237)
T ss_pred HhcCCC
Confidence 999875
No 112
>KOG0464|consensus
Probab=98.84 E-value=1.1e-09 Score=106.32 Aligned_cols=187 Identities=20% Similarity=0.262 Sum_probs=123.4
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh--HHHHHHHHHHHH-------------------
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEIR------------------- 64 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~--~~~~~~i~~~i~------------------- 64 (502)
...|.++.|+||+.|+.+||...+..+...++|...+ +||||.... +...+.+.+++.
T Consensus 124 rvldgavav~dasagve~qtltvwrqadk~~ip~~~f-inkmdk~~anfe~avdsi~ekl~ak~l~l~lpi~eak~fnkg 202 (753)
T KOG0464|consen 124 RVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCF-INKMDKLAANFENAVDSIEEKLGAKALKLQLPIGEAKGFNKG 202 (753)
T ss_pred HHhcCeEEEEeccCCcccceeeeehhccccCCchhhh-hhhhhhhhhhhhhHHHHHHHHhCCceEEEEecccccccccch
Confidence 4568999999999999999999999999999998777 999998643 111111111110
Q ss_pred -----------------------------------------------------------HHHhhc---------------
Q psy15224 65 -----------------------------------------------------------ELLNKY--------------- 70 (502)
Q Consensus 65 -----------------------------------------------------------~~l~~~--------------- 70 (502)
.++..+
T Consensus 203 ~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a~elksa 282 (753)
T KOG0464|consen 203 FLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDAEELKSA 282 (753)
T ss_pred HHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHHHH
Confidence 000000
Q ss_pred ----CCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCC-------CCCeeEEEeEEEeeCCCeEEE
Q psy15224 71 ----EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAI-------DGAFLLPVEDVFSISGRGTVV 139 (502)
Q Consensus 71 ----~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~-------~~p~~~~v~~~~~~~~~G~v~ 139 (502)
-......|+.+.||.++. ++..||+++..++|+|+... ...+....+++.+++.+|..+
T Consensus 283 i~~lt~aq~a~~i~cgsaiknk----------giqplldavtmylpspeernyeflqwykddlcalafkvlhdkqrg~l~ 352 (753)
T KOG0464|consen 283 IHELTCAQKAAPILCGSAIKNK----------GIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLS 352 (753)
T ss_pred HHHHhhhhhhcceehhhhhccc----------CccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhhhhcccccCcee
Confidence 011122445555555543 67789999999999875432 234555667888889999999
Q ss_pred EEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEc----ceecceeecCCeEEEEecCCCccCcccceEEeCCCC
Q psy15224 140 TGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 209 (502)
Q Consensus 140 ~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 209 (502)
+-|+++|+|+..-.+.-. ++..+..+-.+... +..+++..||++... .|+ ..-..||+++..++
T Consensus 353 fmriysgsi~~~~ai~ni--n~~~se~~~kl~~pfade~~~i~qlsagnialt--~gl--k~tatgdtivaska 420 (753)
T KOG0464|consen 353 FMRIYSGSIHNNLAIFNI--NGMCSEGILKLFLPFADEHREIEQLSAGNIALT--AGL--KHTATGDTIVASKA 420 (753)
T ss_pred EEEEecccccCceeeeec--ccccccchHhhhccchhhhhhhhhcccccEEEE--ecc--eeeccCCeEEecch
Confidence 999999999998766433 33334444444332 346788999997655 343 34457888876543
No 113
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.84 E-value=2.4e-08 Score=78.63 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=66.7
Q ss_pred CCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc----eecceeecCCeEEEEecCCC
Q psy15224 119 DGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTK 194 (502)
Q Consensus 119 ~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~ 194 (502)
+.||.+.|+++..+++.|+++++||+||+|+.||.+.... ....++.+|+.++ .++++|.|||++++ .+
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~---~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai--~g-- 73 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR---EEKIKITELRVFNNGEVVTADTVTAGDIAIL--TG-- 73 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC---CcEEEeceeEEEeCCCeEECcEECCCCEEEE--EC--
Confidence 3689999999999999999999999999999999997642 3456788887664 57999999999999 54
Q ss_pred ccCcccceEEe
Q psy15224 195 REDVERGQVLA 205 (502)
Q Consensus 195 ~~~i~~G~vl~ 205 (502)
..++..||+|+
T Consensus 74 l~~~~~Gdtl~ 84 (85)
T cd03690 74 LKGLRVGDVLG 84 (85)
T ss_pred CCCCcCccccC
Confidence 45677898885
No 114
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.83 E-value=9e-09 Score=102.85 Aligned_cols=87 Identities=24% Similarity=0.273 Sum_probs=71.8
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
.++..||++|||||+..|+++++++.+.+++..+.|.++| +||+|..+.+ +....+..+|| ...+|+
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLv-vNK~D~~~~e--------~~~~efyslG~----g~~~~I 145 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILV-VNKIDNLKAE--------ELAYEFYSLGF----GEPVPI 145 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEE-EEcccCchhh--------hhHHHHHhcCC----CCceEe
Confidence 4678899999999999999999999999999887886555 9999987542 22233456777 358899
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
||.+|. |+.+|++.+.+.+|
T Consensus 146 SA~Hg~----------Gi~dLld~v~~~l~ 165 (444)
T COG1160 146 SAEHGR----------GIGDLLDAVLELLP 165 (444)
T ss_pred ehhhcc----------CHHHHHHHHHhhcC
Confidence 999998 99999999999885
No 115
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.82 E-value=3.4e-08 Score=77.56 Aligned_cols=78 Identities=18% Similarity=0.117 Sum_probs=64.2
Q ss_pred eEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc----eecceeecCCeEEEEecCCCccCc
Q psy15224 123 LLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDV 198 (502)
Q Consensus 123 ~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i 198 (502)
...|+++...++.|.++++||++|+|++||.+++.. .....+|..|+..+ .++++|.|||++.+ .|+ .++
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~--~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~ 75 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTN--TGKKERISRLLQPFADQYQEIPSLSAGNIGVI--TGL--KQT 75 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECC--CCCEEEeeEEEEEECCCceECCeeCCCCEEEE--ECC--CCc
Confidence 467899999999999999999999999999998753 23456787887664 58999999999998 553 568
Q ss_pred ccceEEeC
Q psy15224 199 ERGQVLAK 206 (502)
Q Consensus 199 ~~G~vl~~ 206 (502)
+.||+|++
T Consensus 76 ~~Gdtl~~ 83 (83)
T cd04092 76 RTGDTLVT 83 (83)
T ss_pred ccCCEEeC
Confidence 89999874
No 116
>KOG0467|consensus
Probab=98.80 E-value=1.4e-07 Score=98.63 Aligned_cols=86 Identities=23% Similarity=0.253 Sum_probs=62.9
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC------ChHHHH---HHHHHHHHHHHh-----
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV------DDEELL---ELVEIEIRELLN----- 68 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~------~~~~~~---~~i~~~i~~~l~----- 68 (502)
+++..+|.|+++||+.+|+.+||...++.+-..|.+.++| |||||+. .+.+.| -.+++++.....
T Consensus 91 sas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lv-inkidrl~~el~lsp~ea~~~l~r~i~~vn~~i~~~~~~ 169 (887)
T KOG0467|consen 91 SASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILV-INKIDRLITELKLSPQEAYEHLLRVIEQVNGVIGQFLGG 169 (887)
T ss_pred hhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEE-EehhhhHHHHHhcChHHHHHHHHHHHHHhhhHHHHhhcc
Confidence 4566799999999999999999999999999999997776 9999942 222333 233444443333
Q ss_pred --------------hcCCCCCCCeEEEcccccccc
Q psy15224 69 --------------KYEFPGNDIPIIKGSAKLALE 89 (502)
Q Consensus 69 --------------~~~~~~~~~~ii~iSa~~g~~ 89 (502)
..-|.+.+-.+++.||.+|+.
T Consensus 170 ~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~ 204 (887)
T KOG0467|consen 170 IVELDDNWENIEDEEITFGPEDGNVIFASALDGWG 204 (887)
T ss_pred hhhccchhhhhhhcceeecCCCCcEEEEEeccccc
Confidence 223555566789999998765
No 117
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.78 E-value=3e-08 Score=89.93 Aligned_cols=93 Identities=30% Similarity=0.374 Sum_probs=69.3
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
++..+|++|+|+|+.++...++.+++..+...++|.+++ +||+|+.+. . .....+++.+. +++. ..+++++|
T Consensus 87 ~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv-~NK~Dl~~~-~-~~~~~~~~~~~---~~~~--~~~~~~~S 158 (179)
T cd01890 87 SLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPV-INKIDLPSA-D-PERVKQQIEDV---LGLD--PSEAILVS 158 (179)
T ss_pred HHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEE-EECCCCCcC-C-HHHHHHHHHHH---hCCC--cccEEEee
Confidence 456799999999999999889988888877788886555 999999753 1 12222333333 3432 24589999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCCCC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIPTP 114 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~ 114 (502)
|++|. ++.+|++.|.+.+|+|
T Consensus 159 a~~g~----------gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 159 AKTGL----------GVEDLLEAIVERIPPP 179 (179)
T ss_pred ccCCC----------CHHHHHHHHHhhCCCC
Confidence 99987 8999999999887764
No 118
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.76 E-value=9.3e-08 Score=75.61 Aligned_cols=80 Identities=24% Similarity=0.397 Sum_probs=63.8
Q ss_pred eeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCC-CeeEEEEEEEEcc----eecceeecCCeEEEEecCCCcc
Q psy15224 122 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD-TVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKRE 196 (502)
Q Consensus 122 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~-~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~ 196 (502)
|++.|+++...++.|+++++||++|+|++||+|++...+. ....+|.+|+..+ .+++++.|||++.+ .++ .
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i--~gl--~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAI--AGI--E 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEE--ECC--C
Confidence 4688999999999999999999999999999998764311 1346777876543 58999999999977 553 5
Q ss_pred CcccceEEe
Q psy15224 197 DVERGQVLA 205 (502)
Q Consensus 197 ~i~~G~vl~ 205 (502)
++..|++|+
T Consensus 77 ~~~~Gdtl~ 85 (86)
T cd03691 77 DITIGDTIC 85 (86)
T ss_pred CCcccceec
Confidence 678899885
No 119
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.76 E-value=7.3e-08 Score=75.66 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=63.9
Q ss_pred eEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc----eecceeecCCeEEEEecCCCccCc
Q psy15224 123 LLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDV 198 (502)
Q Consensus 123 ~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i 198 (502)
...|+++...++.|+++++||++|+|++||.+.+.. .....+|.+|+..+ .+++++.|||++.+ .|+ .++
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~--~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g~--~~~ 75 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNST--KGKKERVGRLLRMHGKKQEEVEEAGAGDIGAV--AGL--KDT 75 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECC--CCcEEEeeEEEEEcCCCceECCEeCCCCEEEE--ECC--CCC
Confidence 467888888899999999999999999999998763 34556788887653 57899999999999 554 458
Q ss_pred ccceEEeC
Q psy15224 199 ERGQVLAK 206 (502)
Q Consensus 199 ~~G~vl~~ 206 (502)
..||+|++
T Consensus 76 ~~Gdtl~~ 83 (83)
T cd04088 76 ATGDTLCD 83 (83)
T ss_pred ccCCEeeC
Confidence 88999863
No 120
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.74 E-value=3.5e-08 Score=102.68 Aligned_cols=91 Identities=29% Similarity=0.291 Sum_probs=69.6
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
++..||++++|+|+.+|.+.|+.+++..+...+.|.+++ +||+|+.+.++.++++.+++...+..+. ..|++++|
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv-~NK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~vi~~S 325 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIV-VNKWDLVKDEKTREEFKKELRRKLPFLD----FAPIVFIS 325 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEE-EECcccCCCHHHHHHHHHHHHHhcccCC----CCceEEEe
Confidence 467899999999999999999999999998889885554 9999998333455666666665554433 37899999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
|++|. ++.++++.+.+
T Consensus 326 A~~g~----------~v~~l~~~i~~ 341 (429)
T TIGR03594 326 ALTGQ----------GVDKLLDAIDE 341 (429)
T ss_pred CCCCC----------CHHHHHHHHHH
Confidence 99997 55555555443
No 121
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.74 E-value=1.8e-08 Score=97.87 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=76.8
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
++..+|++++|+|++.+...+ ..++..+...+.|.++| +||+|+.+.+.. .+.+..+.....+ .+++++|
T Consensus 76 ~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV-~NK~Dl~~~~~~----~~~~~~~~~~~~~----~~v~~iS 145 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLT-RNKLDNKFKDKL----LPLIDKYAILEDF----KDIVPIS 145 (270)
T ss_pred HHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEE-EECeeCCCHHHH----HHHHHHHHhhcCC----CceEEEe
Confidence 567899999999999875544 55667777788886655 999999864222 2233333333333 3799999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCCC------CCCCCCCCeeEEEeEEEe
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIPT------PNRAIDGAFLLPVEDVFS 131 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~------~~~~~~~p~~~~v~~~~~ 131 (502)
|++|. ++++|++.+.+.+|+ ++..++.|.++.+.+++|
T Consensus 146 A~~g~----------gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ir 189 (270)
T TIGR00436 146 ALTGD----------NTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIR 189 (270)
T ss_pred cCCCC----------CHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHH
Confidence 99987 899999999988874 234466777777776665
No 122
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.72 E-value=1.7e-07 Score=74.11 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=64.3
Q ss_pred eeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc---eecceeecCCeEEEEecCC-CccC
Q psy15224 122 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR---KLLDQGQAGDNIGLLLRGT-KRED 197 (502)
Q Consensus 122 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~---~~v~~a~aG~~v~l~l~~~-~~~~ 197 (502)
|.+.|+++...++.|+++++||++|+|+.||.+++.. .+.+.++..|..+. .+++++.|||++.+.- ++ +..+
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~--~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~~-g~~~l~~ 77 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMS--TGKEYEVEEVGIFRPEMTPTDELSAGQVGYIIA-GIKTVKD 77 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEec--CCCeEEEEEEEEECCCccCCceECCCCEEEEEc-cccccCc
Confidence 4678999999999999999999999999999998753 33456677777543 5789999999999831 22 2356
Q ss_pred cccceEEeC
Q psy15224 198 VERGQVLAK 206 (502)
Q Consensus 198 i~~G~vl~~ 206 (502)
+..|++|++
T Consensus 78 ~~~Gdtl~~ 86 (86)
T cd03699 78 ARVGDTITL 86 (86)
T ss_pred cccccEeeC
Confidence 889999873
No 123
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.71 E-value=4.5e-08 Score=101.98 Aligned_cols=90 Identities=29% Similarity=0.328 Sum_probs=69.4
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
.++..+|++|+|+|+.+|...|+.+++.++...+.|.+++ +||||+.+. +..+++.+++...+.... ..|++++
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv-~NK~Dl~~~-~~~~~~~~~~~~~l~~~~----~~~i~~~ 324 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIV-VNKWDLVDE-KTMEEFKKELRRRLPFLD----YAPIVFI 324 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEE-EECccCCCH-HHHHHHHHHHHHhccccc----CCCEEEE
Confidence 3567899999999999999999999999999899886655 999999864 344555566665554332 3789999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHh
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALD 108 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~ 108 (502)
||++|. ++.++++.+.
T Consensus 325 SA~~~~----------gv~~l~~~i~ 340 (435)
T PRK00093 325 SALTGQ----------GVDKLLEAID 340 (435)
T ss_pred eCCCCC----------CHHHHHHHHH
Confidence 999987 5666555544
No 124
>PRK15494 era GTPase Era; Provisional
Probab=98.70 E-value=1.7e-08 Score=101.08 Aligned_cols=108 Identities=17% Similarity=0.129 Sum_probs=82.2
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
++..||++++|+|+.+++...+..++..++..+.|.++| +||+|+.+. . . .++.+.+.... ...+++|+|
T Consensus 128 ~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlV-iNKiDl~~~-~-~----~~~~~~l~~~~---~~~~i~~iS 197 (339)
T PRK15494 128 SLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFL-LNKIDIESK-Y-L----NDIKAFLTENH---PDSLLFPIS 197 (339)
T ss_pred HhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEE-EEhhcCccc-c-H----HHHHHHHHhcC---CCcEEEEEe
Confidence 467899999999999988887777888888888887665 999999753 1 1 23334443322 135799999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCCC------CCCCCCCCeeEEEeEEEe
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIPT------PNRAIDGAFLLPVEDVFS 131 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~------~~~~~~~p~~~~v~~~~~ 131 (502)
|++|. ++.+|++.|.+.+|+ ++..++.|.++.+.+++|
T Consensus 198 Aktg~----------gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiR 241 (339)
T PRK15494 198 ALSGK----------NIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITR 241 (339)
T ss_pred ccCcc----------CHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 99987 899999999988873 355678888888888776
No 125
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.70 E-value=7e-08 Score=90.36 Aligned_cols=104 Identities=22% Similarity=0.288 Sum_probs=75.6
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC-------h--HHHHHHHHHHHHHHHhhcCCC
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD-------D--EELLELVEIEIRELLNKYEFP 73 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~-------~--~~~~~~i~~~i~~~l~~~~~~ 73 (502)
.++..+|++++|+|+.++...++++++..+...++|.+++ +||+|++. . .+.+.++++++..+++.++++
T Consensus 90 ~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiv-iNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~~~~~~~~~ 168 (213)
T cd04167 90 AALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLV-INKIDRLILELKLPPNDAYFKLRHIIDEVNNIIASFSTT 168 (213)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEE-EECcccCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4567899999999999999999999888888888886555 99999861 1 356777888888888887764
Q ss_pred CCCCe-------EEEccccccccCCCCCCCc----ccHHHHHHHHhhcCCCC
Q psy15224 74 GNDIP-------IIKGSAKLALEGDTGPLGE----QSILSLSKALDTYIPTP 114 (502)
Q Consensus 74 ~~~~~-------ii~iSa~~g~~~~~~w~~~----~~i~~Ll~~l~~~~p~~ 114 (502)
. .+. ++..|+.. .|+.. .++-+|++.|.+.+|.|
T Consensus 169 ~-~~~~~p~~~nv~~~s~~~------~w~~~~~~~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 169 L-SFLFSPENGNVCFASSKF------GFCFTLESFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred C-ceEeccCCCeEEEEecCC------CeEEecHHHHhhhhHHHHHHhhCCCC
Confidence 3 233 44455544 45431 23457888888877754
No 126
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.68 E-value=1.8e-07 Score=73.61 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=60.6
Q ss_pred EEeEEEe---eCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc----eecceeecCCeEEEEecCCCccC
Q psy15224 125 PVEDVFS---ISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKRED 197 (502)
Q Consensus 125 ~v~~~~~---~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~ 197 (502)
.|+++.. .++.|+++++||+||+|+.||.|+... .+...+|..|+..+ .++++|.|||++++ .+ ..+
T Consensus 2 ~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~--~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v--~g--l~~ 75 (85)
T cd03689 2 FVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVR--LGKEVRLSNPQQFFAQDRETVDEAYPGDIIGL--VN--PGN 75 (85)
T ss_pred EEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcC--CCCEEEeeEeEEEecCCeeEcCEECCCCEEEE--EC--CCC
Confidence 3566666 888999999999999999999997653 33456777777654 57999999999999 44 456
Q ss_pred cccceEEeC
Q psy15224 198 VERGQVLAK 206 (502)
Q Consensus 198 i~~G~vl~~ 206 (502)
+..||+|++
T Consensus 76 ~~~Gdtl~~ 84 (85)
T cd03689 76 FQIGDTLTE 84 (85)
T ss_pred ccccCEeeC
Confidence 789999974
No 127
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.68 E-value=5.6e-07 Score=68.66 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=60.8
Q ss_pred CCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcc
Q psy15224 120 GAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVE 199 (502)
Q Consensus 120 ~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~ 199 (502)
.|.++.|...+....+. ++.|+|..|+|++|..+ ++....+|+||+..++++++|.+|+.|++.+.|.. ++.
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l-----~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~ 74 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL-----DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIK 74 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE-----CSSCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc-----CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCC
Confidence 46677777777777777 77889999999999888 34457889999999999999999999999999844 899
Q ss_pred cceEE
Q psy15224 200 RGQVL 204 (502)
Q Consensus 200 ~G~vl 204 (502)
.||+|
T Consensus 75 eGDiL 79 (81)
T PF14578_consen 75 EGDIL 79 (81)
T ss_dssp TT-EE
T ss_pred CCCEE
Confidence 99987
No 128
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.67 E-value=2.3e-07 Score=87.48 Aligned_cols=122 Identities=15% Similarity=0.115 Sum_probs=81.7
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
+..+..+|++++|+|+..|+..++.+++..+...|+|.+++++||+|+.+....++.+.+++...+..-.++ ..++++
T Consensus 98 l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~--~~ki~~ 175 (225)
T cd01882 98 IDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQ--GAKLFY 175 (225)
T ss_pred HHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCC--CCcEEE
Confidence 456778999999999999999999999999999999977756999999865344566666776644321222 368999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEE
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVF 130 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~ 130 (502)
+||++. +..+|- ....++-.|...-+......+....|.++.+.
T Consensus 176 iSa~~~--~~~~~~---e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~ 219 (225)
T cd01882 176 LSGIVH--GRYPKT---EIHNLARFISVMKFRPLNWRNSHPYVLADRME 219 (225)
T ss_pred EeeccC--CCCCHH---HHHHHHHHHHhCCCCCCeeecCCCeEEEeeee
Confidence 999875 333432 34456666654333222223344455555554
No 129
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.64 E-value=2.8e-07 Score=71.90 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=60.6
Q ss_pred eEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc----eecceeecCCeEEEEecCCCccCc
Q psy15224 123 LLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDV 198 (502)
Q Consensus 123 ~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i 198 (502)
...|+++...+. |.++++||++|+|++||.|+... .+...+|.+|.... .+++++.|||++++ .++ . +
T Consensus 2 ~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~--~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i--~g~--~-~ 73 (81)
T cd04091 2 VGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVR--TGKKVRVPRLVRMHSNEMEEVEEAGAGDICAI--FGI--D-C 73 (81)
T ss_pred eEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcC--CCCEEEEeEEEEEeCCCceEccEECCCCEEEE--ECC--C-c
Confidence 456788887766 99999999999999999998764 34567788877653 57899999999997 553 3 8
Q ss_pred ccceEEe
Q psy15224 199 ERGQVLA 205 (502)
Q Consensus 199 ~~G~vl~ 205 (502)
+.||+|+
T Consensus 74 ~~Gdtl~ 80 (81)
T cd04091 74 ASGDTFT 80 (81)
T ss_pred ccCCEec
Confidence 8999986
No 130
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.59 E-value=3e-07 Score=82.23 Aligned_cols=94 Identities=44% Similarity=0.459 Sum_probs=67.1
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcC-CCCCCCeEEEc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE-FPGNDIPIIKG 82 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~-~~~~~~~ii~i 82 (502)
++..+|++++|+|++++...++.+++..+...++|.+++ +||+|+.+.. .+.....+..+..... ......+++++
T Consensus 70 ~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv-~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T cd01887 70 GASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVA-LNKIDKPNAN--PERVKNELSELGLQGEDEWGGDVQIVPT 146 (168)
T ss_pred HHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEE-EEceeccccc--HHHHHHHHHHhhccccccccCcCcEEEe
Confidence 457899999999999999999999999999999996555 9999997541 1112222222221100 01124689999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
||.+|. ++.+|++.|.++
T Consensus 147 Sa~~~~----------gi~~l~~~l~~~ 164 (168)
T cd01887 147 SAKTGE----------GIDDLLEAILLL 164 (168)
T ss_pred ecccCC----------CHHHHHHHHHHh
Confidence 999987 899999988763
No 131
>PRK00089 era GTPase Era; Reviewed
Probab=98.55 E-value=1.5e-07 Score=92.70 Aligned_cols=110 Identities=23% Similarity=0.273 Sum_probs=77.7
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
++..+|++++|+|+..++...+.+++..+...+.|.++| +||+|+....+..... +..+.+..+ ..+++++|
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilV-lNKiDl~~~~~~l~~~---~~~l~~~~~----~~~i~~iS 152 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILV-LNKIDLVKDKEELLPL---LEELSELMD----FAEIVPIS 152 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEE-EECCcCCCCHHHHHHH---HHHHHhhCC----CCeEEEec
Confidence 467899999999999988877888888888778886665 9999998432322222 222222222 35799999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCCC------CCCCCCCCeeEEEeEEEe
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIPT------PNRAIDGAFLLPVEDVFS 131 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~------~~~~~~~p~~~~v~~~~~ 131 (502)
|++|. ++.+|++.+.+.+|+ ++..++.+.++.+.+.+|
T Consensus 153 A~~~~----------gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiR 196 (292)
T PRK00089 153 ALKGD----------NVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIR 196 (292)
T ss_pred CCCCC----------CHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 99987 889999999888763 233455666666666544
No 132
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.54 E-value=2.2e-07 Score=89.82 Aligned_cols=49 Identities=35% Similarity=0.493 Sum_probs=42.4
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~ 52 (502)
.++..+|++++|+|+..|+..|+.+++..+...++|.+++ +||||+...
T Consensus 90 ~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iiv-vNK~D~~~a 138 (267)
T cd04169 90 RTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITF-INKLDREGR 138 (267)
T ss_pred HHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEE-EECCccCCC
Confidence 3567899999999999999999999999999899996655 999998653
No 133
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.50 E-value=5.8e-07 Score=87.29 Aligned_cols=48 Identities=29% Similarity=0.383 Sum_probs=43.2
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 51 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~ 51 (502)
.++..+|.+++|+|+..|...+|.+++..+...++|.+++ +||||+..
T Consensus 83 ~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iiv-vNK~D~~~ 130 (268)
T cd04170 83 AALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIF-INKMDRER 130 (268)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEE-EECCccCC
Confidence 4667899999999999999999999999999999997776 99999864
No 134
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.47 E-value=6.7e-07 Score=93.86 Aligned_cols=89 Identities=24% Similarity=0.265 Sum_probs=64.7
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
+..||++++|+|+.++.+.|+.+.+..+...++|.++| +||||+.+. +.......++...+.... ..|++++||
T Consensus 291 i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV-~NK~Dl~~~-~~~~~~~~~i~~~l~~~~----~~~~~~~SA 364 (472)
T PRK03003 291 IEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLA-FNKWDLVDE-DRRYYLEREIDRELAQVP----WAPRVNISA 364 (472)
T ss_pred HhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEE-EECcccCCh-hHHHHHHHHHHHhcccCC----CCCEEEEEC
Confidence 46899999999999999999998888888889885555 999999864 222233334444443322 368999999
Q ss_pred cccccCCCCCCCcccHHHHHHHHhh
Q psy15224 85 KLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 85 ~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
++|. ++.++++.+.+
T Consensus 365 k~g~----------gv~~lf~~i~~ 379 (472)
T PRK03003 365 KTGR----------AVDKLVPALET 379 (472)
T ss_pred CCCC----------CHHHHHHHHHH
Confidence 9998 56666665544
No 135
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.46 E-value=8.7e-07 Score=79.36 Aligned_cols=91 Identities=26% Similarity=0.290 Sum_probs=66.7
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChH-HHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE-ELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~-~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
.+..+|++++|+|+..+...+..+.+..+...+.|.+++ +||+|+.+.. ...+.+.+.+...+... ...+++++
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv-~nK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 155 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIV-VNKWDLVEKDSKTMKEFKKEIRRKLPFL----DYAPIVFI 155 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEE-EeccccCCccHHHHHHHHHHHHhhcccc----cCCceEEE
Confidence 346799999999999988888877777777788886655 9999998752 33444444444444322 23689999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
||+++. ++.++++.+..
T Consensus 156 Sa~~~~----------~i~~~~~~l~~ 172 (174)
T cd01895 156 SALTGQ----------GVDKLFDAIDE 172 (174)
T ss_pred eccCCC----------CHHHHHHHHHH
Confidence 999987 88888888764
No 136
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.44 E-value=9.7e-07 Score=80.19 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=61.7
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcccc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 85 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~ 85 (502)
..+|++++|+|++.++..++.+++..+...++|.+++ +||+|+.+. +..+...+++.+.++..+ ...+++++||+
T Consensus 99 ~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv-~nK~D~~~~-~~~~~~~~~i~~~l~~~~---~~~~v~~~Sa~ 173 (179)
T TIGR03598 99 ENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIV-LTKADKLKK-SELNKQLKKIKKALKKDA---DDPSVQLFSSL 173 (179)
T ss_pred hhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEE-EECcccCCH-HHHHHHHHHHHHHHhhcc---CCCceEEEECC
Confidence 3578999999999999999999889998899995555 999999875 334555667777776543 23579999999
Q ss_pred ccc
Q psy15224 86 LAL 88 (502)
Q Consensus 86 ~g~ 88 (502)
+|.
T Consensus 174 ~g~ 176 (179)
T TIGR03598 174 KKT 176 (179)
T ss_pred CCC
Confidence 987
No 137
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.44 E-value=6.4e-07 Score=79.60 Aligned_cols=89 Identities=24% Similarity=0.257 Sum_probs=63.9
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
+.++..||++++|+|++++...++.+.+.+ ..+.| +++++||+|+.+. + . +++.++++..++ ..|+++
T Consensus 59 ~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~-~-~----~~~~~~~~~~~~---~~p~~~ 126 (158)
T PRK15467 59 ITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKR-QIAVISKTDMPDA-D-V----AATRKLLLETGF---EEPIFE 126 (158)
T ss_pred HHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCC-eEEEEEccccCcc-c-H----HHHHHHHHHcCC---CCCEEE
Confidence 456789999999999998866555544432 23566 4556999999653 1 1 234556666655 268999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+||++|. ++.+|++.+.+.++
T Consensus 127 ~Sa~~g~----------gi~~l~~~l~~~~~ 147 (158)
T PRK15467 127 LNSHDPQ----------SVQQLVDYLASLTK 147 (158)
T ss_pred EECCCcc----------CHHHHHHHHHHhch
Confidence 9999987 89999999987654
No 138
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=98.44 E-value=2.3e-06 Score=68.68 Aligned_cols=79 Identities=22% Similarity=0.392 Sum_probs=60.2
Q ss_pred eEEEeEEEeeC-CCeEEEEEEEEEeeeecCCEEEEeecC-------CCeeEEEEEEEEcc----eecceeecCCeEEEEe
Q psy15224 123 LLPVEDVFSIS-GRGTVVTGRVERGIVRVGEELEIIGIK-------DTVKTTCTGVEMFR----KLLDQGQAGDNIGLLL 190 (502)
Q Consensus 123 ~~~v~~~~~~~-~~G~v~~g~v~sG~l~~gd~v~i~p~~-------~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l 190 (502)
.+.++++...+ +.|+++++||+||+|+.||.+++...+ .....++..++.+. .++++|.|||+|++
T Consensus 2 v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i-- 79 (93)
T cd03700 2 VMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI-- 79 (93)
T ss_pred eEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE--
Confidence 35678888888 899999999999999999999876411 22346777887654 57899999999999
Q ss_pred cCCCccCcccceEEe
Q psy15224 191 RGTKREDVERGQVLA 205 (502)
Q Consensus 191 ~~~~~~~i~~G~vl~ 205 (502)
.|+ .+++.|++.+
T Consensus 80 ~g~--~~~~~g~~~~ 92 (93)
T cd03700 80 VGL--DQLKSGTTAT 92 (93)
T ss_pred ECC--ccCceEeEec
Confidence 443 3466777643
No 139
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.43 E-value=1.2e-06 Score=77.67 Aligned_cols=86 Identities=27% Similarity=0.332 Sum_probs=62.8
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcccc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 85 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~ 85 (502)
..||++++|+|+.++...+..+....+...+.|.+++ +||+|+.+.+. .+. ...+.... ..+++++||+
T Consensus 11 ~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv-~NK~Dl~~~~~-~~~----~~~~~~~~-----~~~~~~iSa~ 79 (156)
T cd01859 11 KESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIV-LNKADLVPKEV-LEK----WKSIKESE-----GIPVVYVSAK 79 (156)
T ss_pred hhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEE-EEhHHhCCHHH-HHH----HHHHHHhC-----CCcEEEEEcc
Confidence 4599999999999888888777766666778886665 99999976422 111 11222221 2578999999
Q ss_pred ccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 86 LALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 86 ~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+|. ++.+|++.+.+.+|
T Consensus 80 ~~~----------gi~~L~~~l~~~~~ 96 (156)
T cd01859 80 ERL----------GTKILRRTIKELAK 96 (156)
T ss_pred ccc----------cHHHHHHHHHHHHh
Confidence 987 88999999988765
No 140
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.42 E-value=9.3e-07 Score=78.50 Aligned_cols=89 Identities=20% Similarity=0.135 Sum_probs=61.1
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
..++..||++++|+|+......+..+....+... +.|.++| +||+|+.+. +... +....+.+. + ...+
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilV-lNKiDl~~~-~~~~----~~~~~~~~~-~---~~~~ 72 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFV-LNKCDLVPT-WVTA----RWVKILSKE-Y---PTIA 72 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEE-EEchhcCCH-HHHH----HHHHHHhcC-C---cEEE
Confidence 3578899999999999988777777777766653 3776665 999999875 2211 112222221 1 1226
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++||+++. ++.+|++.+.++
T Consensus 73 ~~iSa~~~~----------~~~~L~~~l~~~ 93 (157)
T cd01858 73 FHASINNPF----------GKGSLIQLLRQF 93 (157)
T ss_pred EEeeccccc----------cHHHHHHHHHHH
Confidence 889999887 788888888664
No 141
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=98.40 E-value=3.9e-06 Score=67.47 Aligned_cols=70 Identities=19% Similarity=0.361 Sum_probs=54.5
Q ss_pred eEEEeEEEeeCCC-eEEEEEEEEEeeeecCCEEEEeecC-------CCeeEEEEEEEEcc----eecceeecCCeEEEEe
Q psy15224 123 LLPVEDVFSISGR-GTVVTGRVERGIVRVGEELEIIGIK-------DTVKTTCTGVEMFR----KLLDQGQAGDNIGLLL 190 (502)
Q Consensus 123 ~~~v~~~~~~~~~-G~v~~g~v~sG~l~~gd~v~i~p~~-------~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l 190 (502)
.+.|+++...++. |.+++|||+||+|+.||.|++...+ .....+|..|+..+ .++++|.|||+|++
T Consensus 2 ~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v-- 79 (94)
T cd04090 2 VVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLI-- 79 (94)
T ss_pred EEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEE--
Confidence 4678888888887 6799999999999999999876311 01346777888664 57999999999999
Q ss_pred cCCC
Q psy15224 191 RGTK 194 (502)
Q Consensus 191 ~~~~ 194 (502)
.|++
T Consensus 80 ~gl~ 83 (94)
T cd04090 80 KGID 83 (94)
T ss_pred ECcc
Confidence 5543
No 142
>PRK09866 hypothetical protein; Provisional
Probab=98.38 E-value=1.4e-06 Score=90.97 Aligned_cols=96 Identities=19% Similarity=0.059 Sum_probs=69.3
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCC--CeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGV--PYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i--~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
..++..||++++|||+..+....+++.+..++..+. |.++ ++||+|+.+. ++..+.+...+...+..... ....
T Consensus 253 ~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVIL-VVNKIDl~dreeddkE~Lle~V~~~L~q~~i--~f~e 329 (741)
T PRK09866 253 NQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYV-LVNKFDQQDRNSDDADQVRALISGTLMKGCI--TPQQ 329 (741)
T ss_pred HHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEE-EEEcccCCCcccchHHHHHHHHHHHHHhcCC--CCce
Confidence 345678999999999999888889998888888874 7554 4999999763 22233333434334333233 2356
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++|+||++|. ++..|++.|..+
T Consensus 330 IfPVSAlkG~----------nid~LLdeI~~~ 351 (741)
T PRK09866 330 IFPVSSMWGY----------LANRARHELANN 351 (741)
T ss_pred EEEEeCCCCC----------CHHHHHHHHHhC
Confidence 9999999998 889999998763
No 143
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.35 E-value=1.8e-06 Score=95.17 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=66.7
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
++..||++++|+|+.++.+.|+...+..+...++|.++| +||||+.+. +..+.+..++...+..+. ..+++++|
T Consensus 529 ~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV-~NK~DL~~~-~~~~~~~~~~~~~l~~~~----~~~ii~iS 602 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLV-FNKWDLMDE-FRRQRLERLWKTEFDRVT----WARRVNLS 602 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEE-EEchhcCCh-hHHHHHHHHHHHhccCCC----CCCEEEEE
Confidence 356899999999999999999998888888889886655 999999874 222333333333332222 36889999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
|++|. ++.+|++.+.+..
T Consensus 603 Aktg~----------gv~~L~~~i~~~~ 620 (712)
T PRK09518 603 AKTGW----------HTNRLAPAMQEAL 620 (712)
T ss_pred CCCCC----------CHHHHHHHHHHHH
Confidence 99987 6777777665543
No 144
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.32 E-value=3e-06 Score=74.60 Aligned_cols=84 Identities=24% Similarity=0.247 Sum_probs=63.9
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
.+..+|++++|+|+..+...++.+++..++..+.|.+++ +||+|+.+.+.. ...+..+++ .+++++|
T Consensus 73 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv-~nK~D~~~~~~~--------~~~~~~~~~----~~~~~~S 139 (157)
T cd01894 73 AIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILV-VNKVDNIKEEDE--------AAEFYSLGF----GEPIPIS 139 (157)
T ss_pred HHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEE-EECcccCChHHH--------HHHHHhcCC----CCeEEEe
Confidence 356799999999999988888888888888889886555 999999875221 122333343 2588999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++|. ++.++++.+.+.
T Consensus 140 a~~~~----------gv~~l~~~l~~~ 156 (157)
T cd01894 140 AEHGR----------GIGDLLDAILEL 156 (157)
T ss_pred cccCC----------CHHHHHHHHHhh
Confidence 99987 899999888653
No 145
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.32 E-value=2.8e-06 Score=88.40 Aligned_cols=87 Identities=25% Similarity=0.298 Sum_probs=68.9
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
++..||++++|+|+..|++.++.+++..++..+.|.++| +||+|+.+.+.. ..+ +..+++ .+++++|
T Consensus 75 ~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilV-vNK~D~~~~~~~-------~~~-~~~lg~----~~~~~vS 141 (429)
T TIGR03594 75 AIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILV-ANKIDGKKEDAV-------AAE-FYSLGF----GEPIPIS 141 (429)
T ss_pred HHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEE-EECccCCccccc-------HHH-HHhcCC----CCeEEEe
Confidence 567899999999999999999999999999999886555 999999764211 111 334455 3589999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
|.+|. ++.+|++.+.+.++.
T Consensus 142 a~~g~----------gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 142 AEHGR----------GIGDLLDAILELLPE 161 (429)
T ss_pred CCcCC----------ChHHHHHHHHHhcCc
Confidence 99987 899999999887764
No 146
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=98.30 E-value=1.5e-06 Score=54.41 Aligned_cols=31 Identities=35% Similarity=0.619 Sum_probs=28.4
Q ss_pred CCCeEEEecCCCCCCeEEEEEEeCCCcEEEE
Q psy15224 451 LDELVRIKDGPFTDFSGNIEEVNYEKSRVRV 481 (502)
Q Consensus 451 ~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v 481 (502)
+||.|+|++|||+|+.|+|.+++.++.++.|
T Consensus 1 ~Gd~V~V~~G~~~G~~G~I~~i~~~~~~V~v 31 (32)
T PF00467_consen 1 VGDTVKVISGPFKGKIGKIVEIDRSKVRVTV 31 (32)
T ss_dssp TTSEEEESSSTTTTEEEEEEEEETTTTEEEE
T ss_pred CCCEEEEeEcCCCCceEEEEEEECCCCEEEE
Confidence 5999999999999999999999998877665
No 147
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.25 E-value=2e-06 Score=74.74 Aligned_cols=83 Identities=24% Similarity=0.168 Sum_probs=56.4
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
.+..||++++|+|++++...++.+++.. .+.|.++ ++||+|+.+.... .++...+++..+. .+++++|
T Consensus 59 ~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~il-v~NK~Dl~~~~~~----~~~~~~~~~~~~~----~~~~~~S 126 (142)
T TIGR02528 59 TAADADVIALVQSATDPESRFPPGFASI---FVKPVIG-LVTKIDLAEADVD----IERAKELLETAGA----EPIFEIS 126 (142)
T ss_pred HhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEE-EEEeeccCCcccC----HHHHHHHHHHcCC----CcEEEEe
Confidence 3578999999999998887666544332 3446555 4899999753111 1233444544443 3789999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHh
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALD 108 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~ 108 (502)
|++|. ++.++++.+.
T Consensus 127 a~~~~----------gi~~l~~~l~ 141 (142)
T TIGR02528 127 SVDEQ----------GLEALVDYLN 141 (142)
T ss_pred cCCCC----------CHHHHHHHHh
Confidence 99987 8888888763
No 148
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.23 E-value=6.8e-07 Score=78.42 Aligned_cols=80 Identities=29% Similarity=0.397 Sum_probs=56.2
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcccc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 85 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~ 85 (502)
...|++++|+||+. ..+..+.+..+..+|+|.+++ +||||....+. ...-.+.+++.+ + +|++|+||.
T Consensus 77 ~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvv-lN~~D~a~~~g-~~id~~~Ls~~L---g-----~pvi~~sa~ 144 (156)
T PF02421_consen 77 EKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVV-LNKMDEAERKG-IEIDAEKLSERL---G-----VPVIPVSAR 144 (156)
T ss_dssp TSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEE-EETHHHHHHTT-EEE-HHHHHHHH---T-----S-EEEEBTT
T ss_pred cCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEE-EeCHHHHHHcC-CEECHHHHHHHh---C-----CCEEEEEeC
Confidence 46899999999986 355556667778899996655 99999875411 111112344444 3 689999999
Q ss_pred ccccCCCCCCCcccHHHHHHHH
Q psy15224 86 LALEGDTGPLGEQSILSLSKAL 107 (502)
Q Consensus 86 ~g~~~~~~w~~~~~i~~Ll~~l 107 (502)
+|. ++.+|+++|
T Consensus 145 ~~~----------g~~~L~~~I 156 (156)
T PF02421_consen 145 TGE----------GIDELKDAI 156 (156)
T ss_dssp TTB----------THHHHHHHH
T ss_pred CCc----------CHHHHHhhC
Confidence 987 899998865
No 149
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.22 E-value=1.6e-06 Score=88.17 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=70.2
Q ss_pred ccccCCEEEEEEECCC----CCCcchHHHHHHHHH-----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q psy15224 4 GAAQMDGAILVCSAAD----GPMPQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 74 (502)
Q Consensus 4 g~~~~D~ailvVda~~----g~~~qt~e~l~~~~~-----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 74 (502)
.+..+|++++|+|+.. ....+....+..+.. .+.|.++| +||+|+.+.++. . +.+..+.+.+++
T Consensus 234 ~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlV-lNKiDl~~~~el-~---~~l~~l~~~~~~-- 306 (390)
T PRK12298 234 HLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLV-FNKIDLLDEEEA-E---ERAKAIVEALGW-- 306 (390)
T ss_pred HHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEE-EeCCccCChHHH-H---HHHHHHHHHhCC--
Confidence 3567999999999872 222333334444443 35776665 999999865222 2 223333333332
Q ss_pred CCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCC------CCCCCCCCeeEEEeEEEe
Q psy15224 75 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT------PNRAIDGAFLLPVEDVFS 131 (502)
Q Consensus 75 ~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~------~~~~~~~p~~~~v~~~~~ 131 (502)
..+++++||+++. ++.+|++.|.+.++. ++..++.+.+|.+.+++|
T Consensus 307 -~~~Vi~ISA~tg~----------GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiR 358 (390)
T PRK12298 307 -EGPVYLISAASGL----------GVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHR 358 (390)
T ss_pred -CCCEEEEECCCCc----------CHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHH
Confidence 2368999999987 888999888877752 244456777777777765
No 150
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.20 E-value=5.9e-06 Score=71.90 Aligned_cols=76 Identities=20% Similarity=0.145 Sum_probs=55.4
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
.++..||++++|+|+..+...+..+....+... +.|.+++ +||+|+.+. +.. .++...++..+ .+++
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iiv-lNK~DL~~~-~~~----~~~~~~~~~~~-----~~ii 75 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILL-LNKADLLTE-EQR----KAWAEYFKKEG-----IVVV 75 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEE-EechhcCCH-HHH----HHHHHHHHhcC-----CeEE
Confidence 357789999999999998888888877777766 8886665 999999864 211 23334444333 4689
Q ss_pred Ecccccccc
Q psy15224 81 KGSAKLALE 89 (502)
Q Consensus 81 ~iSa~~g~~ 89 (502)
++||.++.+
T Consensus 76 ~iSa~~~~~ 84 (141)
T cd01857 76 FFSALKENA 84 (141)
T ss_pred EEEecCCCc
Confidence 999998753
No 151
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.18 E-value=1.6e-05 Score=71.51 Aligned_cols=90 Identities=27% Similarity=0.325 Sum_probs=64.9
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe-EEEcccc
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP-IIKGSAK 85 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~-ii~iSa~ 85 (502)
+...++++||+.+++...+++.++.+...++|.+|+ +||||.++..+. ......+...+ .+.....+ ++..|+.
T Consensus 106 ~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv-~tK~DKi~~~~~-~k~l~~v~~~l---~~~~~~~~~~~~~ss~ 180 (200)
T COG0218 106 NLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVV-LTKADKLKKSER-NKQLNKVAEEL---KKPPPDDQWVVLFSSL 180 (200)
T ss_pred hheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEE-EEccccCChhHH-HHHHHHHHHHh---cCCCCccceEEEEecc
Confidence 356899999999999999999999999999997776 999999986222 22223333333 33322111 6777887
Q ss_pred ccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 86 LALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 86 ~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++. ++++|.+.|.+.+
T Consensus 181 ~k~----------Gi~~l~~~i~~~~ 196 (200)
T COG0218 181 KKK----------GIDELKAKILEWL 196 (200)
T ss_pred ccc----------CHHHHHHHHHHHh
Confidence 776 7888888887654
No 152
>PRK04213 GTP-binding protein; Provisional
Probab=98.17 E-value=1.4e-05 Score=74.03 Aligned_cols=92 Identities=27% Similarity=0.271 Sum_probs=61.0
Q ss_pred ccccCCEEEEEEECCCC-----------CCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCC
Q psy15224 4 GAAQMDGAILVCSAADG-----------PMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 72 (502)
Q Consensus 4 g~~~~D~ailvVda~~g-----------~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 72 (502)
++..+|++++|+|+... ...++.+++..+...++|.++| +||+|+.+.+ ++...++... ++.
T Consensus 87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv-~NK~Dl~~~~---~~~~~~~~~~---~~~ 159 (201)
T PRK04213 87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVA-VNKMDKIKNR---DEVLDEIAER---LGL 159 (201)
T ss_pred hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEE-EECccccCcH---HHHHHHHHHH---hcC
Confidence 45678999999999642 2345677788888889997665 9999997642 1122233332 332
Q ss_pred C----CCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 73 P----GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 73 ~----~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
. ....+++++||++| ++.++++.|.+.++.
T Consensus 160 ~~~~~~~~~~~~~~SA~~g-----------gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 160 YPPWRQWQDIIAPISAKKG-----------GIEELKEAIRKRLHE 193 (201)
T ss_pred CccccccCCcEEEEecccC-----------CHHHHHHHHHHhhcC
Confidence 1 11236899999885 467888888776653
No 153
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.14 E-value=1.4e-05 Score=70.67 Aligned_cols=82 Identities=27% Similarity=0.211 Sum_probs=55.6
Q ss_pred CEEEEEEECCCCCCcchHHHH-HHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcccccc
Q psy15224 9 DGAILVCSAADGPMPQTREHI-LLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLA 87 (502)
Q Consensus 9 D~ailvVda~~g~~~qt~e~l-~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~g 87 (502)
|++++|+|+.++......... ..+...++|.++| +||+|+.+. +..... +. .+.... ..+++++||.+|
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiV-lNK~Dl~~~-~~~~~~---~~-~~~~~~----~~~ii~vSa~~~ 70 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILV-LNKADLVPK-EVLRKW---LA-YLRHSY----PTIPFKISATNG 70 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEE-EechhcCCH-HHHHHH---HH-HHHhhC----CceEEEEeccCC
Confidence 889999999887776666555 4566778886665 999999874 211111 11 122221 246899999998
Q ss_pred ccCCCCCCCcccHHHHHHHHhhc
Q psy15224 88 LEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 88 ~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
. ++.+|++.+.+.
T Consensus 71 ~----------gi~~L~~~i~~~ 83 (155)
T cd01849 71 Q----------GIEKKESAFTKQ 83 (155)
T ss_pred c----------ChhhHHHHHHHH
Confidence 7 788888887653
No 154
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.14 E-value=1.9e-05 Score=72.57 Aligned_cols=90 Identities=20% Similarity=0.228 Sum_probs=66.2
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
+..++++++++|+..+....+.+.+..+...++|.+++ +||+|+.+. ...+...+++...+... ..+++++||
T Consensus 104 ~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv-~nK~Dl~~~-~~~~~~~~~i~~~l~~~-----~~~~~~~Sa 176 (196)
T PRK00454 104 RENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIV-LTKADKLKK-GERKKQLKKVRKALKFG-----DDEVILFSS 176 (196)
T ss_pred CccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEE-EECcccCCH-HHHHHHHHHHHHHHHhc-----CCceEEEEc
Confidence 34567899999998887777777777788889885555 999999875 22334444555555432 357899999
Q ss_pred cccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 85 KLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 85 ~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++|. ++.++++.|.+.+
T Consensus 177 ~~~~----------gi~~l~~~i~~~~ 193 (196)
T PRK00454 177 LKKQ----------GIDELRAAIAKWL 193 (196)
T ss_pred CCCC----------CHHHHHHHHHHHh
Confidence 9987 8889998887754
No 155
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=98.06 E-value=3.5e-06 Score=65.95 Aligned_cols=78 Identities=19% Similarity=0.408 Sum_probs=54.4
Q ss_pred eEEEeeccCchHHHHHHHHHHH----HhcCCCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEEeCccceeeee
Q psy15224 330 WYVIHSYSGMEKNVQRKLIERI----NKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVK 405 (502)
Q Consensus 330 WYvl~t~~~~E~~v~~~L~~~~----~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~ 405 (502)
-|+++|++|+|+.++..|.++. ...+ -.++.+|.| +=++|||||+....+.....++
T Consensus 2 iw~Vkc~~G~E~~v~~~l~~k~~~~~~~~~--l~I~Si~~~-----------------~~lkGyIyVEA~~~~~V~~ai~ 62 (84)
T PF03439_consen 2 IWAVKCKPGQEREVAISLMNKAEDLAKKNN--LNIYSIFAP-----------------DSLKGYIYVEAERESDVKEAIR 62 (84)
T ss_dssp EEEEEE-TTTHHHHHHHHHHHHHHHHHHST------EEEE------------------TTSTSEEEEEESSHHHHHHHHT
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhcCC--CceEEEEEe-----------------CCCceEEEEEeCCHHHHHHHHh
Confidence 4899999999999999999874 2233 336678887 4499999999997777778888
Q ss_pred ccCCeeEeccCCCCcceeCCHHHHHHH
Q psy15224 406 NTKKVTGFIGGKSNRPTPISSKEIEEI 432 (502)
Q Consensus 406 ~~~~v~~~l~~~~~~p~~v~~~ei~~~ 432 (502)
.++++.+.. +..+|-+||..+
T Consensus 63 gi~~i~~~~------~~~vp~~E~~~~ 83 (84)
T PF03439_consen 63 GIRHIRGSR------PGLVPIEEMEDL 83 (84)
T ss_dssp T-TTEEEEC------CEEB-GGGTCGG
T ss_pred cccceeecc------ceeECHHHHHhh
Confidence 888887754 336777776543
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.04 E-value=1.3e-05 Score=84.11 Aligned_cols=87 Identities=21% Similarity=0.189 Sum_probs=64.6
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
++..||++|+|+|+..+.+..+.+.+..++..++|.++| +||+|+...+. +...+ ..+++. ..+++|
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV-~NK~Dl~~~~~-------~~~~~-~~~g~~----~~~~iS 180 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILA-ANKVDDERGEA-------DAAAL-WSLGLG----EPHPVS 180 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEE-EECccCCccch-------hhHHH-HhcCCC----CeEEEE
Confidence 456799999999999998887888888888888886555 99999865311 11112 234552 246899
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
|++|. ++.+|++.+.+.++.
T Consensus 181 A~~g~----------gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 181 ALHGR----------GVGDLLDAVLAALPE 200 (472)
T ss_pred cCCCC----------CcHHHHHHHHhhccc
Confidence 99987 889999999877654
No 157
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.01 E-value=5.5e-05 Score=67.11 Aligned_cols=91 Identities=26% Similarity=0.352 Sum_probs=65.7
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
...++.+++++|+....+....+.+..+...+.|.+++ +||+|+... +........+...++. .. ...+++++||
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v-~nK~D~~~~-~~~~~~~~~~~~~l~~-~~--~~~~~~~~Sa 153 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVV-LTKADKLKK-SELAKALKEIKKELKL-FE--IDPPIILFSS 153 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEE-EEchhcCCh-HHHHHHHHHHHHHHHh-cc--CCCceEEEec
Confidence 34678899999999887788888888888888885555 999999765 2223333344444442 11 2367999999
Q ss_pred cccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 85 KLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 85 ~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++. ++.++++.|.++
T Consensus 154 ~~~~----------~~~~l~~~l~~~ 169 (170)
T cd01876 154 LKGQ----------GIDELRALIEKW 169 (170)
T ss_pred CCCC----------CHHHHHHHHHHh
Confidence 9987 888999888764
No 158
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.01 E-value=1e-05 Score=72.23 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=54.7
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHH----HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~----~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
++.+|++++|+|+...-. .+....+..+. ..++|.++ ++||+|+.+. ...+++.+.+.......+. ..+++
T Consensus 71 ~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~il-v~NK~D~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~ 146 (167)
T cd04160 71 YAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLI-LANKQDLPDA-LSVEEIKEVFQDKAEEIGR--RDCLV 146 (167)
T ss_pred hCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEE-EEEccccccC-CCHHHHHHHhccccccccC--CceEE
Confidence 567999999999976421 22222322222 24788555 5999998664 1122222222222222222 24689
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+++||++|. ++.++++.|.+
T Consensus 147 ~~~Sa~~g~----------gv~e~~~~l~~ 166 (167)
T cd04160 147 LPVSALEGT----------GVREGIEWLVE 166 (167)
T ss_pred EEeeCCCCc----------CHHHHHHHHhc
Confidence 999999987 88999988753
No 159
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.00 E-value=1.8e-05 Score=87.19 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=66.4
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
++..||++|+|+|+.+|+...+.+.+..++..++|.++| +||+|+.+... ...++ ..+++. ..+++|
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV-~NK~D~~~~~~-------~~~~~-~~lg~~----~~~~iS 417 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLA-VNKIDDQASEY-------DAAEF-WKLGLG----EPYPIS 417 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEE-EECcccccchh-------hHHHH-HHcCCC----CeEEEE
Confidence 457899999999999999999888888899999996665 99999865311 11222 234542 246899
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
|.+|. ++.+|++.+.+.++.
T Consensus 418 A~~g~----------GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 418 AMHGR----------GVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCC----------CchHHHHHHHHhccc
Confidence 99998 899999999887754
No 160
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.00 E-value=3.3e-05 Score=80.51 Aligned_cols=85 Identities=24% Similarity=0.243 Sum_probs=64.2
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
++..||++++|+|+.++.+..+.+....++..++|.+++ +||+|+.+.+. .+.++ ..+++. .++++|
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv-~NK~D~~~~~~-------~~~~~-~~lg~~----~~~~iS 143 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILV-VNKVDGPDEEA-------DAYEF-YSLGLG----EPYPIS 143 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEE-EECccCccchh-------hHHHH-HhcCCC----CCEEEE
Confidence 457899999999999999888888888899999886555 99999765311 12222 234542 368999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
|.+|. ++.+|++.+....
T Consensus 144 a~~g~----------gv~~l~~~I~~~~ 161 (435)
T PRK00093 144 AEHGR----------GIGDLLDAILEEL 161 (435)
T ss_pred eeCCC----------CHHHHHHHHHhhC
Confidence 99987 8899999987643
No 161
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.00 E-value=1.9e-05 Score=71.09 Aligned_cols=87 Identities=21% Similarity=0.119 Sum_probs=59.2
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
..+..||++++|+|+.++......+.+..+ .+.|.++| +||+|+.+. +... +...+++..+ .+++++
T Consensus 15 ~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilV-lNK~Dl~~~-~~~~----~~~~~~~~~~-----~~vi~i 81 (171)
T cd01856 15 EKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIV-LNKADLADP-KKTK----KWLKYFESKG-----EKVLFV 81 (171)
T ss_pred HHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEE-EehhhcCCh-HHHH----HHHHHHHhcC-----CeEEEE
Confidence 457889999999999987766665544433 36676655 999999764 2111 1222333221 358899
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
||.++. ++.+|++.+...+|
T Consensus 82 Sa~~~~----------gi~~L~~~l~~~l~ 101 (171)
T cd01856 82 NAKSGK----------GVKKLLKAAKKLLK 101 (171)
T ss_pred ECCCcc----------cHHHHHHHHHHHHH
Confidence 999887 88889988887654
No 162
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.99 E-value=4.3e-05 Score=66.79 Aligned_cols=91 Identities=27% Similarity=0.254 Sum_probs=62.2
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
.+..+|++++|+|+..+....+..+.......++|.+++ +||+|+........ ... ...... ......+++++|
T Consensus 72 ~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv-~nK~D~~~~~~~~~-~~~-~~~~~~---~~~~~~~~~~~s 145 (163)
T cd00880 72 VLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLV-LNKIDLLPEEEEEE-LLE-LRLLIL---LLLLGLPVIAVS 145 (163)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEE-EEccccCChhhHHH-HHH-HHHhhc---ccccCCceEEEe
Confidence 457899999999999987777766566667778886554 99999987522211 111 011111 112357899999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
|.++. ++.++++.+.+.
T Consensus 146 a~~~~----------~v~~l~~~l~~~ 162 (163)
T cd00880 146 ALTGE----------GIDELREALIEA 162 (163)
T ss_pred eeccC----------CHHHHHHHHHhh
Confidence 99887 888888887653
No 163
>PRK12289 GTPase RsgA; Reviewed
Probab=97.99 E-value=3.7e-05 Score=76.95 Aligned_cols=84 Identities=25% Similarity=0.390 Sum_probs=59.1
Q ss_pred ccccCCEEEEEEECCCCC-Cc-chHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 4 GAAQMDGAILVCSAADGP-MP-QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~-~~-qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
+++++|.+++|+|+.+.. .. +..+.+..+...++|.++| +||+|+++.++ .+ .+.+.++..++ ++++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILV-lNK~DLv~~~~-~~----~~~~~~~~~g~-----~v~~ 154 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLC-LNKADLVSPTE-QQ----QWQDRLQQWGY-----QPLF 154 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE-EEchhcCChHH-HH----HHHHHHHhcCC-----eEEE
Confidence 478999999999998543 22 3356666677789997666 99999987522 11 23334444443 5899
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHh
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALD 108 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~ 108 (502)
+||.+|. ++.+|++.+.
T Consensus 155 iSA~tg~----------GI~eL~~~L~ 171 (352)
T PRK12289 155 ISVETGI----------GLEALLEQLR 171 (352)
T ss_pred EEcCCCC----------CHHHHhhhhc
Confidence 9999987 8888887764
No 164
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.98 E-value=2.9e-05 Score=68.43 Aligned_cols=83 Identities=22% Similarity=0.303 Sum_probs=56.0
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcccc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 85 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~ 85 (502)
..+|++++|+|+... .+....+..+...++|.+++ +||+|+.+.... . .....+.+.++ .+++++||.
T Consensus 73 ~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv-~NK~Dl~~~~~~-~---~~~~~~~~~~~-----~~~~~iSa~ 140 (158)
T cd01879 73 EKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVA-LNMIDEAEKRGI-K---IDLDKLSELLG-----VPVVPTSAR 140 (158)
T ss_pred CCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEE-Eehhhhcccccc-h---hhHHHHHHhhC-----CCeEEEEcc
Confidence 489999999999863 33334445566788886665 999999875211 1 11222333222 479999999
Q ss_pred ccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 86 LALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 86 ~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+|. ++.++++.+...
T Consensus 141 ~~~----------~~~~l~~~l~~~ 155 (158)
T cd01879 141 KGE----------GIDELKDAIAEL 155 (158)
T ss_pred CCC----------CHHHHHHHHHHH
Confidence 987 888888887653
No 165
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.97 E-value=3.1e-05 Score=71.02 Aligned_cols=94 Identities=18% Similarity=0.080 Sum_probs=56.9
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHH-HHHhhcCCCCCCCeEEEc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIR-ELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~-~~l~~~~~~~~~~~ii~i 82 (502)
....+|++++|+|+.+.......+. .....+.|.++| +||+|+.+.+...+....... ...+..++. ..+++++
T Consensus 31 ~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV-~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~v 105 (190)
T cd01855 31 ISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILV-GNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK--PKDVILI 105 (190)
T ss_pred cccCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEE-EEchhcCCCCCCHHHHHHHHHHHHHhhcCCC--cccEEEE
Confidence 3567999999999987544333332 223356776555 999999754221111111110 011222221 1358999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
||++|. ++.+|++.+.+.+|
T Consensus 106 SA~~~~----------gi~eL~~~l~~~l~ 125 (190)
T cd01855 106 SAKKGW----------GVEELINAIKKLAK 125 (190)
T ss_pred ECCCCC----------CHHHHHHHHHHHhh
Confidence 999987 89999999988664
No 166
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.97 E-value=3.9e-05 Score=67.87 Aligned_cols=88 Identities=24% Similarity=0.172 Sum_probs=61.6
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
+..+|.+++|+|+.+.....+...+..+...+.|.+++ +||+|+....+...+... .+..... ..+++++|+
T Consensus 80 ~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv-~nK~Dl~~~~~~~~~~~~---~~~~~~~----~~~~~~~s~ 151 (168)
T cd04163 80 LKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILV-LNKIDLVKDKEDLLPLLE---KLKELGP----FAEIFPISA 151 (168)
T ss_pred HHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEE-EEchhccccHHHHHHHHH---HHHhccC----CCceEEEEe
Confidence 56789999999999886666667777777778886665 999999843222222222 2222211 357899999
Q ss_pred cccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 85 KLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 85 ~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++. ++.+|++.|.+.
T Consensus 152 ~~~~----------~~~~l~~~l~~~ 167 (168)
T cd04163 152 LKGE----------NVDELLEEIVKY 167 (168)
T ss_pred ccCC----------ChHHHHHHHHhh
Confidence 9887 888998888653
No 167
>PRK00098 GTPase RsgA; Reviewed
Probab=97.96 E-value=4.2e-05 Score=75.25 Aligned_cols=83 Identities=31% Similarity=0.375 Sum_probs=56.2
Q ss_pred cccCCEEEEEEECCCCCC-c-chHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 5 AAQMDGAILVCSAADGPM-P-QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~-qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
|+.+|.+++|+|+.+... . ...+.+..+...++|.+|| +||+|+.+..+..+ ++...++..+ .+++++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIV-lNK~DL~~~~~~~~----~~~~~~~~~g-----~~v~~v 147 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIV-LNKIDLLDDLEEAR----ELLALYRAIG-----YDVLEL 147 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE-EEhHHcCCCHHHHH----HHHHHHHHCC-----CeEEEE
Confidence 589999999999975332 2 2244566677889997666 99999974322211 2333444444 479999
Q ss_pred cccccccCCCCCCCcccHHHHHHHH
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKAL 107 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l 107 (502)
||.++. ++.+|++.+
T Consensus 148 SA~~g~----------gi~~L~~~l 162 (298)
T PRK00098 148 SAKEGE----------GLDELKPLL 162 (298)
T ss_pred eCCCCc----------cHHHHHhhc
Confidence 999887 777777665
No 168
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.96 E-value=2.5e-05 Score=70.40 Aligned_cols=89 Identities=22% Similarity=0.209 Sum_probs=55.6
Q ss_pred cccCCEEEEEEECCCCC-CcchHHHHHHH----HHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGP-MPQTREHILLA----RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~~qt~e~l~~~----~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...+|++++|+|+...- ..+..+++..+ ...++|.+++ .||+|+.+.. ..+++...++........+++
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv-~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~ 152 (173)
T cd04154 79 FESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLIL-ANKQDLPGAL-----SEEEIREALELDKISSHHWRI 152 (173)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEE-EECcccccCC-----CHHHHHHHhCccccCCCceEE
Confidence 45799999999998752 12222222222 2256775554 9999997631 112344444332223345789
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+++||++|. ++.++++.+.+
T Consensus 153 ~~~Sa~~g~----------gi~~l~~~l~~ 172 (173)
T cd04154 153 QPCSAVTGE----------GLLQGIDWLVD 172 (173)
T ss_pred EeccCCCCc----------CHHHHHHHHhc
Confidence 999999987 89999888753
No 169
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.95 E-value=2.7e-05 Score=68.92 Aligned_cols=89 Identities=24% Similarity=0.196 Sum_probs=54.1
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHH-HHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHIL-LARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~-~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|++.... ....+.+. ++.. .++|.+++ +||+|+.+... .. ++...+....+.....++
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv-~nK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~~~ 137 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVF-ANKQDMPGALS-EA----EISEKLGLSELKDRTWSI 137 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEE-EeCCCCCCCCC-HH----HHHHHhCccccCCCcEEE
Confidence 567999999999986321 11223332 2222 36776555 99999975411 11 233233211222234689
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+++||++|. ++.++++.|.+
T Consensus 138 ~~~Sa~~~~----------gi~~l~~~l~~ 157 (158)
T cd04151 138 FKTSAIKGE----------GLDEGMDWLVN 157 (158)
T ss_pred EEeeccCCC----------CHHHHHHHHhc
Confidence 999999988 89999988753
No 170
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.93 E-value=4.4e-05 Score=68.26 Aligned_cols=87 Identities=23% Similarity=0.196 Sum_probs=54.0
Q ss_pred cccCCEEEEEEECCCCC-C-cchHHHHHHHHH-----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15224 5 AAQMDGAILVCSAADGP-M-PQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 77 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~-~qt~e~l~~~~~-----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 77 (502)
+..+|++++|+|+...- . .+....+..+.. .+.|.++ ++||+|+.+.... . ..+..++... ...
T Consensus 76 ~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~iv-v~NK~Dl~~~~~~-~---~~~~~~~~~~----~~~ 146 (170)
T cd01898 76 IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIV-VLNKIDLLDEEEL-F---ELLKELLKEL----WGK 146 (170)
T ss_pred HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEE-EEEchhcCCchhh-H---HHHHHHHhhC----CCC
Confidence 34699999999998762 2 222223333332 2566555 5999999775221 1 2233333322 135
Q ss_pred eEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 78 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 78 ~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++++||+++. ++.++++.+.+.
T Consensus 147 ~~~~~Sa~~~~----------gi~~l~~~i~~~ 169 (170)
T cd01898 147 PVFPISALTGE----------GLDELLRKLAEL 169 (170)
T ss_pred CEEEEecCCCC----------CHHHHHHHHHhh
Confidence 78999999987 888999887653
No 171
>PRK01889 GTPase RsgA; Reviewed
Probab=97.90 E-value=5.9e-05 Score=76.04 Aligned_cols=82 Identities=28% Similarity=0.347 Sum_probs=60.1
Q ss_pred cccCCEEEEEEECCCCCCc-chHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 5 AAQMDGAILVCSAADGPMP-QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~-qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
|+++|.+++|+++...+.. ...+.|..+...|++.+|| +||+|+++..+ +..+++..+ . ...+++++|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIV-LNK~DL~~~~~---~~~~~~~~~----~---~g~~Vi~vS 178 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIV-LTKADLCEDAE---EKIAEVEAL----A---PGVPVLAVS 178 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEE-EEChhcCCCHH---HHHHHHHHh----C---CCCcEEEEE
Confidence 6889999999999877776 5567788889999998776 99999987411 111222222 1 135799999
Q ss_pred ccccccCCCCCCCcccHHHHHHHH
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKAL 107 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l 107 (502)
+.+|. ++.+|.+.+
T Consensus 179 a~~g~----------gl~~L~~~L 192 (356)
T PRK01889 179 ALDGE----------GLDVLAAWL 192 (356)
T ss_pred CCCCc----------cHHHHHHHh
Confidence 99887 777777766
No 172
>PRK13768 GTPase; Provisional
Probab=97.89 E-value=4.4e-05 Score=73.24 Aligned_cols=91 Identities=26% Similarity=0.312 Sum_probs=63.2
Q ss_pred CCEEEEEEECCCCCCcchHHHHHHHH-----HhCCCeEEEEEEcCCCCChHHHHHHHHHHHH------------------
Q psy15224 8 MDGAILVCSAADGPMPQTREHILLAR-----QVGVPYIVVFLNKADMVDDEELLELVEIEIR------------------ 64 (502)
Q Consensus 8 ~D~ailvVda~~g~~~qt~e~l~~~~-----~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~------------------ 64 (502)
+|++++|+|+..+..+.+.+....+. ..++|.++| +||+|+.+.++. +.....+.
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v-~nK~D~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~ 206 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPV-LNKADLLSEEEL-ERILKWLEDPEYLLEELKLEKGLQGL 206 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEE-EEhHhhcCchhH-HHHHHHHhCHHHHHHHHhcccchHHH
Confidence 89999999999888877766554433 578887776 999999875221 22211111
Q ss_pred ------HHHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 65 ------ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 65 ------~~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
..++..+. ..+++++|++++. ++.+|++.|.+.++.
T Consensus 207 ~~~~~~~~i~~~~~---~~~vi~iSa~~~~----------gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 207 LSLELLRALEETGL---PVRVIPVSAKTGE----------GFDELYAAIQEVFCG 248 (253)
T ss_pred HHHHHHHHHHHHCC---CCcEEEEECCCCc----------CHHHHHHHHHHHcCC
Confidence 12233332 3579999999887 899999999988864
No 173
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.85 E-value=9.8e-05 Score=70.48 Aligned_cols=84 Identities=26% Similarity=0.352 Sum_probs=56.9
Q ss_pred cccCCEEEEEEECCCCC-C-cchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 5 AAQMDGAILVCSAADGP-M-PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~-~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
++++|.+++|.|+.+.. . ....+.+..+...+++.+|| +||+|+.+...... +....++..+ .+++.+
T Consensus 34 ~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV-~NK~DL~~~~~~~~----~~~~~~~~~g-----~~v~~~ 103 (245)
T TIGR00157 34 VANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIV-LNKIDLLDDEDMEK----EQLDIYRNIG-----YQVLMT 103 (245)
T ss_pred cccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE-EECcccCCCHHHHH----HHHHHHHHCC-----CeEEEE
Confidence 57899999999998643 2 33445566677788987666 99999976422111 2222333333 478999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHh
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALD 108 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~ 108 (502)
||++|. ++.+|++.+.
T Consensus 104 SAktg~----------gi~eLf~~l~ 119 (245)
T TIGR00157 104 SSKNQD----------GLKELIEALQ 119 (245)
T ss_pred ecCCch----------hHHHHHhhhc
Confidence 999987 7788877664
No 174
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.84 E-value=8.4e-05 Score=66.35 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=53.0
Q ss_pred cCCEEEEEEECCCCCC---cchHHHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 7 QMDGAILVCSAADGPM---PQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 7 ~~D~ailvVda~~g~~---~qt~e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
.+|++++|+|+..... ....+.+..+... ++|.+ +++||+|+.+... ..+ ...+.+ . ...++++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvi-lv~NK~Dl~~~~~-~~~----~~~~~~---~--~~~~~~~ 147 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVI-VVLNKIDLLTFED-LSE----IEEEEE---L--EGEEVLK 147 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeE-EEEEccccCchhh-HHH----HHHhhh---h--ccCceEE
Confidence 3689999999986432 1222334444444 67755 5599999987522 111 222222 1 2367999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+||++|. ++.++++.+.+.
T Consensus 148 ~Sa~~~~----------gi~~l~~~l~~~ 166 (168)
T cd01897 148 ISTLTEE----------GVDEVKNKACEL 166 (168)
T ss_pred EEecccC----------CHHHHHHHHHHH
Confidence 9999987 899999988764
No 175
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.84 E-value=5e-05 Score=73.98 Aligned_cols=87 Identities=20% Similarity=0.148 Sum_probs=59.1
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
..+..||++++|+||.........+....+ .+.|.++| +||+|+.+. +..+ ...+.++..+ .+++++
T Consensus 17 ~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiV-lNK~DL~~~-~~~~----~~~~~~~~~~-----~~vi~i 83 (276)
T TIGR03596 17 EKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIV-LNKADLADP-AVTK----QWLKYFEEKG-----IKALAI 83 (276)
T ss_pred HHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEE-EEccccCCH-HHHH----HHHHHHHHcC-----CeEEEE
Confidence 356789999999999887666555544444 26676555 999999764 2111 1222333222 468999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
||.++. ++.+|++.+.+.++
T Consensus 84 Sa~~~~----------gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 84 NAKKGK----------GVKKIIKAAKKLLK 103 (276)
T ss_pred ECCCcc----------cHHHHHHHHHHHHH
Confidence 999886 78889888877664
No 176
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.80 E-value=7.2e-05 Score=66.23 Aligned_cols=89 Identities=19% Similarity=0.192 Sum_probs=53.2
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHH------HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLAR------QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 77 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~------~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 77 (502)
+..+|++++|+|+.+... ......+..+. ..++|.+++ +||+|+.+... .+ ++...+..........
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv-~NK~Dl~~~~~-~~----~~~~~l~~~~~~~~~~ 139 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFF-ANKMDLPDALT-AV----KITQLLGLENIKDKPW 139 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEE-EeCccccCCCC-HH----HHHHHhCCccccCceE
Confidence 467999999999987532 12222232221 236785555 99999976411 11 2222222111111235
Q ss_pred eEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 78 PIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 78 ~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+++++||++|. ++.++++.|.+
T Consensus 140 ~~~~~Sa~~g~----------gv~~~~~~l~~ 161 (162)
T cd04157 140 HIFASNALTGE----------GLDEGVQWLQA 161 (162)
T ss_pred EEEEeeCCCCC----------chHHHHHHHhc
Confidence 68999999987 88999988753
No 177
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.79 E-value=4.6e-05 Score=65.45 Aligned_cols=85 Identities=21% Similarity=0.194 Sum_probs=60.2
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
++.+..||++++|.||++....-.- .++...+.|.|= +|||+|+.+.++.. +....+|+..|.. .+++
T Consensus 58 i~ta~dad~V~ll~dat~~~~~~pP---~fa~~f~~pvIG-VITK~Dl~~~~~~i----~~a~~~L~~aG~~----~if~ 125 (143)
T PF10662_consen 58 IVTAQDADVVLLLQDATEPRSVFPP---GFASMFNKPVIG-VITKIDLPSDDANI----ERAKKWLKNAGVK----EIFE 125 (143)
T ss_pred HHHHhhCCEEEEEecCCCCCccCCc---hhhcccCCCEEE-EEECccCccchhhH----HHHHHHHHHcCCC----CeEE
Confidence 4567799999999999985432222 234556777554 59999999432222 3455677777774 3689
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHh
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALD 108 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~ 108 (502)
+|+.+|. ++.+|.+.|.
T Consensus 126 vS~~~~e----------Gi~eL~~~L~ 142 (143)
T PF10662_consen 126 VSAVTGE----------GIEELKDYLE 142 (143)
T ss_pred EECCCCc----------CHHHHHHHHh
Confidence 9999987 9999998875
No 178
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.77 E-value=0.00011 Score=71.86 Aligned_cols=82 Identities=28% Similarity=0.282 Sum_probs=56.3
Q ss_pred cccCCEEEEEEECCCCC-C-cchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 5 AAQMDGAILVCSAADGP-M-PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~-~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
++.+|.+++|+|+++.. . ....+++..+...++|.++| +||+|+.+..+. . .........+ .+++++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIV-lNK~DL~~~~~~-~----~~~~~~~~~g-----~~v~~v 144 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIV-LTKADLLDDEEE-E----LELVEALALG-----YPVLAV 144 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEE-EEHHHCCChHHH-H----HHHHHHHhCC-----CeEEEE
Confidence 67899999999998765 3 23345677778889997666 999999874211 0 1111222222 579999
Q ss_pred cccccccCCCCCCCcccHHHHHHHH
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKAL 107 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l 107 (502)
||+++. ++.+|.+.|
T Consensus 145 SA~~g~----------gi~~L~~~L 159 (287)
T cd01854 145 SAKTGE----------GLDELREYL 159 (287)
T ss_pred ECCCCc----------cHHHHHhhh
Confidence 999987 777777665
No 179
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=97.76 E-value=4.4e-05 Score=46.18 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=24.4
Q ss_pred cCCCCeEEEecCCCCCCeEEEEEEeC
Q psy15224 449 YQLDELVRIKDGPFTDFSGNIEEVNY 474 (502)
Q Consensus 449 ~~~G~~V~I~~GPf~g~~g~v~~~~~ 474 (502)
+++|+.|+|++|||+|+.|.|.+++.
T Consensus 2 ~~~G~~V~I~~G~~~g~~g~i~~i~~ 27 (28)
T smart00739 2 FEVGDTVRVIAGPFKGKVGKVLEVDG 27 (28)
T ss_pred CCCCCEEEEeECCCCCcEEEEEEEcC
Confidence 67999999999999999999999885
No 180
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.75 E-value=0.00011 Score=72.04 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=60.1
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
..+..||++++|+||.........+....+. +.|.++| +||+|+.+. ...+ ...++++..+ .+++++
T Consensus 20 ~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiV-lNK~DL~~~-~~~~----~~~~~~~~~~-----~~vi~v 86 (287)
T PRK09563 20 ENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLI-LNKSDLADP-EVTK----KWIEYFEEQG-----IKALAI 86 (287)
T ss_pred HHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEE-EEchhcCCH-HHHH----HHHHHHHHcC-----CeEEEE
Confidence 3567899999999999877766665544443 6776665 999999764 2111 2223333222 468999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
||.++. ++.+|++.+.+.++
T Consensus 87 Sa~~~~----------gi~~L~~~l~~~l~ 106 (287)
T PRK09563 87 NAKKGQ----------GVKKILKAAKKLLK 106 (287)
T ss_pred ECCCcc----------cHHHHHHHHHHHHH
Confidence 999886 78888888877654
No 181
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.72 E-value=0.00013 Score=72.65 Aligned_cols=86 Identities=23% Similarity=0.184 Sum_probs=52.8
Q ss_pred ccCCEEEEEEECCCCC----CcchHHHHHHHHH-----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15224 6 AQMDGAILVCSAADGP----MPQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 76 (502)
Q Consensus 6 ~~~D~ailvVda~~g~----~~qt~e~l~~~~~-----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 76 (502)
..||++++|+|++..- ..+-......+.. .+.|.++| +||+|+.+.+. .+++.++ +.+.++
T Consensus 234 erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV-~NK~DL~~~~~-~~~~~~~---l~~~~~----- 303 (329)
T TIGR02729 234 ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVV-LNKIDLLDEEE-LAELLKE---LKKALG----- 303 (329)
T ss_pred HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEE-EeCccCCChHH-HHHHHHH---HHHHcC-----
Confidence 4589999999998531 1121222222222 35675555 99999987522 2222222 222222
Q ss_pred CeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 77 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 77 ~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
.+++++||+++. ++.+|++.+.+.+
T Consensus 304 ~~vi~iSAktg~----------GI~eL~~~I~~~l 328 (329)
T TIGR02729 304 KPVFPISALTGE----------GLDELLYALAELL 328 (329)
T ss_pred CcEEEEEccCCc----------CHHHHHHHHHHHh
Confidence 469999999987 8999999887644
No 182
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.71 E-value=0.00012 Score=65.75 Aligned_cols=89 Identities=20% Similarity=0.211 Sum_probs=53.4
Q ss_pred cccCCEEEEEEECCCCC-CcchHHHH-HHHH---HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGP-MPQTREHI-LLAR---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~~qt~e~l-~~~~---~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...||++++|+|+.... .....+.+ .++. ..++|. +++.||+|+.+. .. .+++.+.++.-.......++
T Consensus 74 ~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl~~~-~~----~~~i~~~~~~~~~~~~~~~~ 147 (168)
T cd04149 74 YTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALL-LVFANKQDLPDA-MK----PHEIQEKLGLTRIRDRNWYV 147 (168)
T ss_pred hccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcE-EEEEECcCCccC-CC----HHHHHHHcCCCccCCCcEEE
Confidence 46799999999998632 12222333 2222 235675 455999998653 11 12344443211222223578
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+++||++|. ++.++++.|.+
T Consensus 148 ~~~SAk~g~----------gv~~~~~~l~~ 167 (168)
T cd04149 148 QPSCATSGD----------GLYEGLTWLSS 167 (168)
T ss_pred EEeeCCCCC----------ChHHHHHHHhc
Confidence 999999998 88888888753
No 183
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.71 E-value=0.0002 Score=63.56 Aligned_cols=84 Identities=19% Similarity=0.163 Sum_probs=54.8
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
+..+|++++|+|+++...-+. .+.+..++.. ++|.+++ .||+|+... . ..+...+.+.. ..++++
T Consensus 70 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv-~nK~Dl~~~-~-----~~~~~~~~~~~-----~~~~~~ 137 (161)
T cd04124 70 YHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVV-ANKIDLDPS-V-----TQKKFNFAEKH-----NLPLYY 137 (161)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEE-EECccCchh-H-----HHHHHHHHHHc-----CCeEEE
Confidence 567999999999987654333 3334444443 6776555 999998542 1 11222333322 257999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+||++|. ++.++++.+.+.
T Consensus 138 ~Sa~~~~----------gv~~l~~~l~~~ 156 (161)
T cd04124 138 VSAADGT----------NVVKLFQDAIKL 156 (161)
T ss_pred EeCCCCC----------CHHHHHHHHHHH
Confidence 9999987 888888887654
No 184
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.71 E-value=0.00013 Score=65.76 Aligned_cols=89 Identities=19% Similarity=0.113 Sum_probs=52.5
Q ss_pred cccCCEEEEEEECCCCCCc-chHH-HHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMP-QTRE-HILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~-qt~e-~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...+|++++|+|+++...- ..++ ...++.. .++|.++ ++||+|+.+... .+ ++...+..........++
T Consensus 80 ~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~vi-v~NK~Dl~~~~~-~~----~i~~~l~~~~~~~~~~~~ 153 (174)
T cd04153 80 YTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLV-LANKQDLKGAMT-PA----EISESLGLTSIRDHTWHI 153 (174)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEE-EEECCCCCCCCC-HH----HHHHHhCcccccCCceEE
Confidence 4679999999999875321 1122 2222222 2467555 599999865311 11 222222211112234689
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+++||++|. ++.++++.|.+
T Consensus 154 ~~~SA~~g~----------gi~e~~~~l~~ 173 (174)
T cd04153 154 QGCCALTGE----------GLPEGLDWIAS 173 (174)
T ss_pred EecccCCCC----------CHHHHHHHHhc
Confidence 999999987 88999888753
No 185
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=97.70 E-value=0.00049 Score=53.63 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=53.3
Q ss_pred EEEEEEEEeecCCC-----CCCcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEE
Q psy15224 215 HFTGEIYALSKDEG-----GRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIR 289 (502)
Q Consensus 215 ~f~a~v~~l~~~~~-----~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr 289 (502)
.++.+.++|+..-+ .+-.|+..|...++.+|++...|++...++ | .+++.+.+|+|.+.|+|+++.
T Consensus 3 ~l~i~~~Ll~r~vg~~~~~~kv~~i~~~E~LmlnIGsatt~G~V~~~k~-------d--~~~v~L~~Pvc~~~g~rvaiS 73 (88)
T PF09173_consen 3 ELEIEYHLLERVVGVKEKEAKVEPIKKGEVLMLNIGSATTGGVVTSVKK-------D--MAEVELKKPVCAEKGERVAIS 73 (88)
T ss_dssp EEEEEEEE-SSCSSSSS-CCS-----TTEEEEEEETTEEEEEEEEEEET-------T--EEEEEEEEEEE-STTSEEEEE
T ss_pred EEEEEEEEehhhhCccccceecccCCCCCEEEEEEccccccEEEEEEEC-------C--EEEEEecCCeEcCcCCeeeee
Confidence 45666666665422 122679999999999999999999975442 3 467899999999999999884
Q ss_pred e----CCeEEEEEEE
Q psy15224 290 E----GVQQFIQDNL 300 (502)
Q Consensus 290 ~----~~~~ig~G~i 300 (502)
. ..|.+|+|.|
T Consensus 74 Rri~~rWRLIG~G~I 88 (88)
T PF09173_consen 74 RRIGNRWRLIGWGII 88 (88)
T ss_dssp EEETTSEEEEEEEEE
T ss_pred hhccCeEEEEEEEeC
Confidence 2 3499999986
No 186
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.70 E-value=9.1e-05 Score=65.41 Aligned_cols=89 Identities=21% Similarity=0.197 Sum_probs=55.0
Q ss_pred cccCCEEEEEEECCCCC-CcchHHHHHHHH----HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGP-MPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~~qt~e~l~~~~----~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|+...- ..+..+++..+. ..+.|.+++ .||+|+.+. ...+ ++...+..........++
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv-~nK~D~~~~-~~~~----~~~~~~~~~~~~~~~~~~ 137 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIF-ANKQDLPGA-LSVS----ELIEKLGLEKILGRRWHI 137 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEE-eeccCCccc-cCHH----HHHHhhChhhccCCcEEE
Confidence 46789999999998752 222333333222 246775555 999999864 2112 223333222122235789
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+++||++|. ++.++++.|..
T Consensus 138 ~~~Sa~~~~----------gv~~~~~~l~~ 157 (158)
T cd00878 138 QPCSAVTGD----------GLDEGLDWLLQ 157 (158)
T ss_pred EEeeCCCCC----------CHHHHHHHHhh
Confidence 999999987 88888888754
No 187
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.68 E-value=0.0001 Score=67.16 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=53.0
Q ss_pred cccCCEEEEEEECCCCCCcc-h----HHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCC-CCCCe
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-T----REHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP-GNDIP 78 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t----~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~-~~~~~ 78 (502)
...||++++|+|+...-.-+ . .+++......++|.+++ +||+|+.+. ... +++..++...... ....+
T Consensus 73 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv-~NK~D~~~~-~~~----~~~~~~~~~~~~~~~~~~~ 146 (183)
T cd04152 73 TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVL-ANKQDLPNA-LSV----SEVEKLLALHELSASTPWH 146 (183)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEE-EECcCcccc-CCH----HHHHHHhCccccCCCCceE
Confidence 45799999999998642111 1 12222333457786555 999998642 000 1222232211111 11357
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++++||++|. ++.++++.|.+.+
T Consensus 147 ~~~~SA~~~~----------gi~~l~~~l~~~l 169 (183)
T cd04152 147 VQPACAIIGE----------GLQEGLEKLYEMI 169 (183)
T ss_pred EEEeecccCC----------CHHHHHHHHHHHH
Confidence 8999999987 8888888776543
No 188
>PRK12288 GTPase RsgA; Reviewed
Probab=97.68 E-value=0.00031 Score=70.36 Aligned_cols=87 Identities=22% Similarity=0.293 Sum_probs=58.6
Q ss_pred cccCCEEEEEEECCCCCCc-chHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 5 AAQMDGAILVCSAADGPMP-QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~-qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
|+++|.+++|.+....... ...+.+..+...+++.+|| +||+|+.+.++. +.+ .+....+..++ .+++++|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIV-lNK~DL~~~~~~-~~~-~~~~~~y~~~g-----~~v~~vS 189 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIV-LNKIDLLDDEGR-AFV-NEQLDIYRNIG-----YRVLMVS 189 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEE-EECccCCCcHHH-HHH-HHHHHHHHhCC-----CeEEEEe
Confidence 5789999998887654442 2344566777889997766 999999875221 111 22223333333 4799999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
|.++. ++.+|++.|..
T Consensus 190 A~tg~----------GideL~~~L~~ 205 (347)
T PRK12288 190 SHTGE----------GLEELEAALTG 205 (347)
T ss_pred CCCCc----------CHHHHHHHHhh
Confidence 99987 88888888753
No 189
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.66 E-value=9.4e-05 Score=68.55 Aligned_cols=82 Identities=28% Similarity=0.347 Sum_probs=54.0
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|++.+...+ ...+...+... ++|. ++|+||+|+.+.... . ..+.. ...+++
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~v-iiV~NK~Dl~~~~~~-~-------~~~~~-----~~~~~~ 183 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPM-ILVLNKIDLLDDEEL-E-------ERLEA-----GRPDAV 183 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCE-EEEEEccccCChHHH-H-------HHhhc-----CCCceE
Confidence 45799999999998765433 33333444443 4664 455999999875211 1 12211 235799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++||++|. ++.++++.|...
T Consensus 184 ~~Sa~~~~----------gi~~l~~~L~~~ 203 (204)
T cd01878 184 FISAKTGE----------GLDELLEAIEEL 203 (204)
T ss_pred EEEcCCCC----------CHHHHHHHHHhh
Confidence 99999987 888888887653
No 190
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.66 E-value=0.00018 Score=64.09 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=55.4
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|++....-+. ...+..+.. .++|.++| .||+|+.+..+. ..++...+.+..+. .+++
T Consensus 73 ~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv-~nK~Dl~~~~~~---~~~~~~~~~~~~~~----~~~~ 144 (165)
T cd01864 73 YRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLI-GNKCDLEEQREV---LFEEACTLAEKNGM----LAVL 144 (165)
T ss_pred hccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEE-EECccccccccc---CHHHHHHHHHHcCC----cEEE
Confidence 456899999999987543222 223333333 35665554 999999754211 11233444444333 4689
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++||++|. ++.++++.+.+.
T Consensus 145 e~Sa~~~~----------~v~~~~~~l~~~ 164 (165)
T cd01864 145 ETSAKESQ----------NVEEAFLLMATE 164 (165)
T ss_pred EEECCCCC----------CHHHHHHHHHHh
Confidence 99999987 888998887653
No 191
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=97.66 E-value=0.00019 Score=71.60 Aligned_cols=89 Identities=20% Similarity=0.113 Sum_probs=55.2
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH-----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~-----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
+..||++++|+|++..-. .+.......+.. .+.|.++| +||+|+.+.++..+ .++..+++.. ..+
T Consensus 234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV-~NKiDL~~~~~~~~---~~~~~~~~~~-----~~~ 304 (335)
T PRK12299 234 IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILV-LNKIDLLDEEEERE---KRAALELAAL-----GGP 304 (335)
T ss_pred hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEE-EECcccCCchhHHH---HHHHHHHHhc-----CCC
Confidence 456899999999985322 222223333333 35675555 99999976522211 1222223322 257
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++++||+++. ++.+|++.|.+.++
T Consensus 305 i~~iSAktg~----------GI~eL~~~L~~~l~ 328 (335)
T PRK12299 305 VFLISAVTGE----------GLDELLRALWELLE 328 (335)
T ss_pred EEEEEcCCCC----------CHHHHHHHHHHHHH
Confidence 9999999987 89999999877654
No 192
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.64 E-value=0.00013 Score=65.58 Aligned_cols=87 Identities=26% Similarity=0.222 Sum_probs=52.9
Q ss_pred ccccCCEEEEEEECCCCC-----C--cchHHHHHHHH----------HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHH
Q psy15224 4 GAAQMDGAILVCSAADGP-----M--PQTREHILLAR----------QVGVPYIVVFLNKADMVDDEELLELVEIEIREL 66 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~-----~--~qt~e~l~~~~----------~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~ 66 (502)
.+..+|++++|+|+.... . .+...+...+. ..+.|.+++ +||+|+.+.... .... ....
T Consensus 71 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv-~NK~Dl~~~~~~-~~~~--~~~~ 146 (176)
T cd01881 71 HIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYV-LNKIDLDDAEEL-EEEL--VREL 146 (176)
T ss_pred HHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEE-EEchhcCchhHH-HHHH--HHHH
Confidence 356799999999998763 1 12222222222 146776555 999999875221 1111 1111
Q ss_pred HhhcCCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 67 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 67 l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
. .....+++++||.++. ++.++++.+..
T Consensus 147 ~-----~~~~~~~~~~Sa~~~~----------gl~~l~~~l~~ 174 (176)
T cd01881 147 A-----LEEGAEVVPISAKTEE----------GLDELIRAIYE 174 (176)
T ss_pred h-----cCCCCCEEEEehhhhc----------CHHHHHHHHHh
Confidence 1 1123579999999987 88899888765
No 193
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.64 E-value=0.00055 Score=60.46 Aligned_cols=87 Identities=23% Similarity=0.206 Sum_probs=62.1
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhC-CCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVG-VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~-i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
.+.++.++++||++.+.....++.+++....+ +| ++|++||.|+.+... -++++++++.-. ...|+|+++
T Consensus 89 ~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a~p-----pe~i~e~l~~~~---~~~~vi~~~ 159 (187)
T COG2229 89 SRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIP-VVVAINKQDLFDALP-----PEKIREALKLEL---LSVPVIEID 159 (187)
T ss_pred hCCcceEEEEEecCCCcchHHHHHHHHHhhccCCC-EEEEeeccccCCCCC-----HHHHHHHHHhcc---CCCceeeee
Confidence 45689999999999987776677788888888 77 555699999987510 124555554321 257899999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
|..+. +..+.|+.+...
T Consensus 160 a~e~~----------~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGE----------GARDQLDVLLLK 176 (187)
T ss_pred cccch----------hHHHHHHHHHhh
Confidence 98776 666666666553
No 194
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.62 E-value=0.00025 Score=62.90 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=52.1
Q ss_pred cccCCEEEEEEECCCCC-CcchHHHHH-HHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGP-MPQTREHIL-LARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~~qt~e~l~-~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...||++++|+|++.-- ..+..+.+. ++.. .+.| ++++.||+|+.+... .+ ++...+....+....+.+
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~~~ 138 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV-LLVFANKQDLPNAMS-AA----EVTDKLGLHSLRNRNWYI 138 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCCC-HH----HHHHHhCccccCCCCEEE
Confidence 46799999999997521 122233332 2221 2456 555599999965311 11 222222111122234567
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+++||++|. ++.++++.|.+
T Consensus 139 ~~~Sak~g~----------gv~~~~~~l~~ 158 (159)
T cd04150 139 QATCATSGD----------GLYEGLDWLSN 158 (159)
T ss_pred EEeeCCCCC----------CHHHHHHHHhc
Confidence 899999998 89999988754
No 195
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.60 E-value=0.0003 Score=62.78 Aligned_cols=91 Identities=21% Similarity=0.195 Sum_probs=55.4
Q ss_pred cccCCEEEEEEECCCCCCcchH--HHHHHHHH--hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR--EHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~--e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|+++||+|++....-+.. ..+..++. .++|.++ |.||+|+.+.... ....+++..+.+.+.. ..+++
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pvii-v~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~---~~~~~ 142 (166)
T cd01893 68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIIL-VGNKSDLRDGSSQ-AGLEEEMLPIMNEFRE---IETCV 142 (166)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE-EEEchhcccccch-hHHHHHHHHHHHHHhc---ccEEE
Confidence 4679999999999875443331 22333443 3567555 5999999764221 0112233333333221 13799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
.+||++|. ++.++++.+...
T Consensus 143 e~Sa~~~~----------~v~~lf~~~~~~ 162 (166)
T cd01893 143 ECSAKTLI----------NVSEVFYYAQKA 162 (166)
T ss_pred Eecccccc----------CHHHHHHHHHHH
Confidence 99999987 888888887653
No 196
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.60 E-value=0.00051 Score=66.19 Aligned_cols=85 Identities=31% Similarity=0.371 Sum_probs=62.4
Q ss_pred cccCCEEEEEEECCCCCC--cchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 5 AAQMDGAILVCSAADGPM--PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~--~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
++++|-+++|+.+.+..+ .+-.+.|-++...|+..+|+ +||+|+++.++... ++.......+++ +++.+
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIv-lnK~DL~~~~~~~~---~~~~~~y~~~gy-----~v~~~ 147 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIV-LNKIDLLDDEEAAV---KELLREYEDIGY-----PVLFV 147 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEE-EEccccCcchHHHH---HHHHHHHHhCCe-----eEEEe
Confidence 356888999999887654 45567888999999998887 99999998743322 345556666665 68899
Q ss_pred cccccccCCCCCCCcccHHHHHHHHh
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALD 108 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~ 108 (502)
|++++. ++.+|.+.+.
T Consensus 148 s~~~~~----------~~~~l~~~l~ 163 (301)
T COG1162 148 SAKNGD----------GLEELAELLA 163 (301)
T ss_pred cCcCcc----------cHHHHHHHhc
Confidence 998876 6666666553
No 197
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.59 E-value=0.00028 Score=62.37 Aligned_cols=89 Identities=19% Similarity=0.275 Sum_probs=52.7
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHH-HHHH---HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCC-CCCCe
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHI-LLAR---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP-GNDIP 78 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l-~~~~---~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~-~~~~~ 78 (502)
+..+|++++|+|+.+... ......+ .+++ ..+.|.++ ++||+|+.+... .+ ++...+....+. ....+
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piil-v~nK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~~~ 138 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVL-LANKQDLPGALT-AE----EITRRFKLKKYCSDRDWY 138 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEE-EEECcccccCcC-HH----HHHHHcCCcccCCCCcEE
Confidence 567999999999987531 1122222 2222 14677555 599999965311 11 233222211111 12457
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
++++||++|. ++.++++.|.+
T Consensus 139 ~~~~Sa~~~~----------gv~~~~~~i~~ 159 (160)
T cd04156 139 VQPCSAVTGE----------GLAEAFRKLAS 159 (160)
T ss_pred EEecccccCC----------ChHHHHHHHhc
Confidence 9999999987 88999988754
No 198
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.59 E-value=0.00036 Score=64.43 Aligned_cols=86 Identities=22% Similarity=0.116 Sum_probs=53.1
Q ss_pred cccCCEEEEEEECCCCCCcchHHHH----HHHH------HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHI----LLAR------QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 74 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l----~~~~------~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 74 (502)
+..||+++||+|++... +.+++ ..+. ..++|.+++ .||+|+.+..... .+++..+.++. +
T Consensus 78 ~~~ad~iilv~D~~~~~---S~~~~~~~~~~i~~~~~~~~~~~piiiv-gNK~Dl~~~~~~~---~~~~~~~~~~~-~-- 147 (198)
T cd04142 78 LRNSRAFILVYDICSPD---SFHYVKLLRQQILETRPAGNKEPPIVVV-GNKRDQQRHRFAP---RHVLSVLVRKS-W-- 147 (198)
T ss_pred hccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcccCCCCCCEEEE-EECcccccccccc---HHHHHHHHHHh-c--
Confidence 57899999999998642 33332 2222 245775555 9999996531100 11233333321 1
Q ss_pred CCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 75 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 75 ~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
..+++++||++|. ++.+|++.+...+
T Consensus 148 -~~~~~e~Sak~g~----------~v~~lf~~i~~~~ 173 (198)
T cd04142 148 -KCGYLECSAKYNW----------HILLLFKELLISA 173 (198)
T ss_pred -CCcEEEecCCCCC----------CHHHHHHHHHHHh
Confidence 3689999999998 7888888776543
No 199
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.59 E-value=0.00021 Score=71.94 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=52.6
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..||++++|+|+++....+ .......+..+ +.|.++ |+||+|+.+.++ +..... . ..+++
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIl-V~NK~Dl~~~~~--------v~~~~~--~----~~~~i 330 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLL-VYNKIDLLDEPR--------IERLEE--G----YPEAV 330 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEE-EEEeecCCChHh--------HHHHHh--C----CCCEE
Confidence 56799999999998754332 22222344443 567555 499999986411 111111 1 13589
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++||++|. ++.+|++.|.+.
T Consensus 331 ~iSAktg~----------GI~eL~~~I~~~ 350 (351)
T TIGR03156 331 FVSAKTGE----------GLDLLLEAIAER 350 (351)
T ss_pred EEEccCCC----------CHHHHHHHHHhh
Confidence 99999987 899999988653
No 200
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.58 E-value=0.00021 Score=62.62 Aligned_cols=78 Identities=29% Similarity=0.324 Sum_probs=53.0
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHH-HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~-~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
.+..+|++++|+|+........ ...+. ..+.|. ++++||+|+.+.... . ......+++++
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~---~~~~~~~~~~~v-i~v~nK~D~~~~~~~-----------~----~~~~~~~~~~~ 137 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEED---LEILELPADKPI-IVVLNKSDLLPDSEL-----------L----SLLAGKPIIAI 137 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHH---HHHHHhhcCCCE-EEEEEchhcCCcccc-----------c----cccCCCceEEE
Confidence 3457999999999997543333 33333 456664 555999999875221 1 11124689999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
||+++. ++.+|++.|.+.
T Consensus 138 Sa~~~~----------~v~~l~~~l~~~ 155 (157)
T cd04164 138 SAKTGE----------GLDELKEALLEL 155 (157)
T ss_pred ECCCCC----------CHHHHHHHHHHh
Confidence 999987 889999888764
No 201
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.57 E-value=0.00032 Score=63.30 Aligned_cols=90 Identities=21% Similarity=0.182 Sum_probs=53.5
Q ss_pred cccCCEEEEEEECCCCC-CcchHHHHHHHH----HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGP-MPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~~qt~e~l~~~~----~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...||++|+|+|++.-- .....+++..+. ..++|.+| +.||+|+.+... . +++...+.........+.+
T Consensus 78 ~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piil-v~NK~Dl~~~~~-~----~~i~~~~~~~~~~~~~~~~ 151 (175)
T smart00177 78 YTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILV-FANKQDLPDAMK-A----AEITEKLGLHSIRDRNWYI 151 (175)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEE-EEeCcCcccCCC-H----HHHHHHhCccccCCCcEEE
Confidence 46799999999987521 223344443332 13466545 599999975311 1 1233332211112223557
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++||++|. ++.++++.|.+.
T Consensus 152 ~~~Sa~~g~----------gv~e~~~~l~~~ 172 (175)
T smart00177 152 QPTCATSGD----------GLYEGLTWLSNN 172 (175)
T ss_pred EEeeCCCCC----------CHHHHHHHHHHH
Confidence 789999997 899999988764
No 202
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.56 E-value=0.00011 Score=64.19 Aligned_cols=83 Identities=31% Similarity=0.271 Sum_probs=54.1
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
+..+|.+++|+|+..+...+.......+.. ++|.++ ++||+|+.... ...+....++.++. .+++++||
T Consensus 78 i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~iv-v~nK~D~~~~~-----~~~~~~~~~~~~~~----~~~~~~sa 146 (161)
T TIGR00231 78 LRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIIL-VGNKIDLRDAK-----LKTHVAFLFAKLNG----EPIIPLSA 146 (161)
T ss_pred EEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEE-EEEcccCCcch-----hhHHHHHHHhhccC----CceEEeec
Confidence 445666666667666554555555555443 778555 59999998742 22344455555443 46999999
Q ss_pred cccccCCCCCCCcccHHHHHHHHh
Q psy15224 85 KLALEGDTGPLGEQSILSLSKALD 108 (502)
Q Consensus 85 ~~g~~~~~~w~~~~~i~~Ll~~l~ 108 (502)
.+|. ++.++++.|.
T Consensus 147 ~~~~----------gv~~~~~~l~ 160 (161)
T TIGR00231 147 ETGK----------NIDSAFKIVE 160 (161)
T ss_pred CCCC----------CHHHHHHHhh
Confidence 9987 8888887764
No 203
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.56 E-value=0.00027 Score=62.66 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=56.1
Q ss_pred cccCCEEEEEEECCCCC-CcchHHHHHHHHHhC---CCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGP-MPQTREHILLARQVG---VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~~qt~e~l~~~~~~~---i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|++... ..+....+..+.... +| +++++||+|+.+.... -.++...+....+ .+++
T Consensus 71 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~-----~~~~ 141 (163)
T cd01860 71 YRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNII-IALVGNKADLESKRQV---STEEAQEYADENG-----LLFF 141 (163)
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccCcC---CHHHHHHHHHHcC-----CEEE
Confidence 45789999999998542 233344444444443 55 4555999998742110 0112333444333 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++||++|. ++.++++.|.+.+
T Consensus 142 ~~Sa~~~~----------~v~~l~~~l~~~l 162 (163)
T cd01860 142 ETSAKTGE----------NVNELFTEIAKKL 162 (163)
T ss_pred EEECCCCC----------CHHHHHHHHHHHh
Confidence 99999987 8899999987755
No 204
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.54 E-value=0.00032 Score=73.02 Aligned_cols=88 Identities=28% Similarity=0.257 Sum_probs=53.4
Q ss_pred cccCCEEEEEEECCCC---CCc--chH----HHHHHH----------HHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHH
Q psy15224 5 AAQMDGAILVCSAADG---PMP--QTR----EHILLA----------RQVGVPYIVVFLNKADMVDDEELLELVEIEIRE 65 (502)
Q Consensus 5 ~~~~D~ailvVda~~g---~~~--qt~----e~l~~~----------~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~ 65 (502)
+..||++++|||++.- ..+ +.. +..... ...+.|.+|| +||+|+.+..+..+ .+..
T Consensus 234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVV-lNKiDL~da~el~e----~l~~ 308 (500)
T PRK12296 234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVV-LNKIDVPDARELAE----FVRP 308 (500)
T ss_pred HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEE-EECccchhhHHHHH----HHHH
Confidence 4569999999999741 111 111 111111 2246776555 99999976432222 2233
Q ss_pred HHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 66 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 66 ~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
.++.. .++++++||+++. ++.+|++.|.+.+.
T Consensus 309 ~l~~~-----g~~Vf~ISA~tge----------GLdEL~~~L~ell~ 340 (500)
T PRK12296 309 ELEAR-----GWPVFEVSAASRE----------GLRELSFALAELVE 340 (500)
T ss_pred HHHHc-----CCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 34332 2579999999987 88888888766553
No 205
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.54 E-value=0.00032 Score=63.89 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=53.0
Q ss_pred cccCCEEEEEEECCCCC-CcchHHHHHHHH----HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCC-------
Q psy15224 5 AAQMDGAILVCSAADGP-MPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF------- 72 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~~qt~e~l~~~~----~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~------- 72 (502)
...+|++++|+|+.+.- ..+..+.+..+. ..++|.+++ +||+|+... -..+ ++.+.+.-...
T Consensus 82 ~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv-~NK~Dl~~~-~~~~----~i~~~l~l~~~~~~~~~~ 155 (184)
T smart00178 82 FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLIL-GNKIDAPYA-ASED----ELRYALGLTNTTGSKGKV 155 (184)
T ss_pred hCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEE-EeCccccCC-CCHH----HHHHHcCCCccccccccc
Confidence 46799999999997631 122333332222 257775555 999998643 0011 23323211110
Q ss_pred CCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 73 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 73 ~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
......++++||++|. ++.++++.|.+
T Consensus 156 ~~~~~~i~~~Sa~~~~----------g~~~~~~wl~~ 182 (184)
T smart00178 156 GVRPLEVFMCSVVRRM----------GYGEGFKWLSQ 182 (184)
T ss_pred CCceeEEEEeecccCC----------ChHHHHHHHHh
Confidence 0123568999999987 88999998865
No 206
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.54 E-value=0.0002 Score=63.94 Aligned_cols=86 Identities=20% Similarity=0.119 Sum_probs=52.6
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHH---HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLAR---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~---~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...+|++++|+|+.++...+. ...+..++ ..++|.+++ .||+|+.+..+.... +...+.... ..+++
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v-~NK~D~~~~~~i~~~----~~~~~~~~~----~~~~~ 147 (169)
T cd04114 77 YRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILV-GNKIDLAERREVSQQ----RAEEFSDAQ----DMYYL 147 (169)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEE-EECcccccccccCHH----HHHHHHHHc----CCeEE
Confidence 467999999999986533221 12222222 235776555 999999754221121 112222211 25799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
++||++|. ++.++++.+.+
T Consensus 148 ~~Sa~~~~----------gv~~l~~~i~~ 166 (169)
T cd04114 148 ETSAKESD----------NVEKLFLDLAC 166 (169)
T ss_pred EeeCCCCC----------CHHHHHHHHHH
Confidence 99999987 88899988765
No 207
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.53 E-value=0.00033 Score=62.05 Aligned_cols=87 Identities=28% Similarity=0.237 Sum_probs=53.8
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...+|++++|+|+++...-+ ..+.+..+.. .++|.+++ +||+|+.+.+... .++...+++..+ .++
T Consensus 71 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv-~NK~Dl~~~~~~~---~~~~~~~~~~~~-----~~~ 141 (164)
T cd04145 71 MRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILV-GNKADLEHQRKVS---REEGQELARKLK-----IPY 141 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEE-eeCccccccceec---HHHHHHHHHHcC-----CcE
Confidence 45789999999998643211 1222222222 36775555 9999997531111 112344444432 478
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++||++|. ++.++++.+.+.
T Consensus 142 ~~~Sa~~~~----------~i~~l~~~l~~~ 162 (164)
T cd04145 142 IETSAKDRL----------NVDKAFHDLVRV 162 (164)
T ss_pred EEeeCCCCC----------CHHHHHHHHHHh
Confidence 999999987 889999888653
No 208
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.52 E-value=0.00014 Score=73.42 Aligned_cols=85 Identities=28% Similarity=0.247 Sum_probs=62.6
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
.+..||.+++|+|++++...++..++. +...+.|.++| +||.|+..... .... ++ . ...+++.+|
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v-~NK~DL~~~~~--------~~~~--~~--~-~~~~~i~iS 357 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVV-LNKADLVSKIE--------LESE--KL--A-NGDAIISIS 357 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEE-Eechhcccccc--------cchh--hc--c-CCCceEEEE
Confidence 467899999999999988888888877 45566776665 99999988511 0101 11 1 234799999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
+++|. +++.|.++|.+.+..
T Consensus 358 a~t~~----------Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 358 AKTGE----------GLDALREAIKQLFGK 377 (454)
T ss_pred ecCcc----------CHHHHHHHHHHHHhh
Confidence 99987 888888888776543
No 209
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.51 E-value=0.00035 Score=61.15 Aligned_cols=89 Identities=19% Similarity=0.216 Sum_probs=53.7
Q ss_pred cccCCEEEEEEECCCCC-CcchHHHHHHHH----HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGP-MPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~~qt~e~l~~~~----~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|+.... ..+..+.+..+. ..++|.+++ +||+|+.+... .+ ++...+..-.......++
T Consensus 65 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv-~nK~D~~~~~~-~~----~~~~~~~~~~~~~~~~~~ 138 (159)
T cd04159 65 CRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVL-GNKNDLPGALS-VD----ELIEQMNLKSITDREVSC 138 (159)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEE-EeCccccCCcC-HH----HHHHHhCcccccCCceEE
Confidence 46789999999997632 233333333332 246786555 99999876411 11 122222111111234688
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+++|+++|. ++.++++.|.+
T Consensus 139 ~~~Sa~~~~----------gi~~l~~~l~~ 158 (159)
T cd04159 139 YSISCKEKT----------NIDIVLDWLIK 158 (159)
T ss_pred EEEEeccCC----------ChHHHHHHHhh
Confidence 999999987 88899888754
No 210
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.49 E-value=0.00029 Score=72.23 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=53.5
Q ss_pred cccCCEEEEEEECCCC----CCcchHHHHHHHHH-----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q psy15224 5 AAQMDGAILVCSAADG----PMPQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 75 (502)
Q Consensus 5 ~~~~D~ailvVda~~g----~~~qt~e~l~~~~~-----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 75 (502)
+..||++++|+|++.. +..+.......+.. .+.|.+|| +||+|+.+.++ .+..+.+.++
T Consensus 234 ier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV-~NK~DL~~~~e-------~l~~l~~~l~---- 301 (424)
T PRK12297 234 IERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVV-ANKMDLPEAEE-------NLEEFKEKLG---- 301 (424)
T ss_pred HhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEE-EeCCCCcCCHH-------HHHHHHHHhC----
Confidence 4568999999999742 11222222333333 46776655 99999854322 2233333333
Q ss_pred CCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 76 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 76 ~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
.+++++||+++. ++.+|++.|.+.+.
T Consensus 302 -~~i~~iSA~tge----------GI~eL~~~L~~~l~ 327 (424)
T PRK12297 302 -PKVFPISALTGQ----------GLDELLYAVAELLE 327 (424)
T ss_pred -CcEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 468999999987 88898888876554
No 211
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.49 E-value=0.00027 Score=63.31 Aligned_cols=92 Identities=15% Similarity=0.201 Sum_probs=54.1
Q ss_pred cccCCEEEEEEECCCCC-CcchHHHH-HHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCC-CCCCCe
Q psy15224 5 AAQMDGAILVCSAADGP-MPQTREHI-LLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF-PGNDIP 78 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~~qt~e~l-~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~-~~~~~~ 78 (502)
...+|++++|+|++..- .....+.+ .++.. .+.| ++++.||+|+.+. ... +++..+++...+ ....++
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~----~~~~~~~~~~~~~~~~~~~ 137 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL-LLIFANKQDVAGA-LSV----EEMTELLSLHKLCCGRSWY 137 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccC-CCH----HHHHHHhCCccccCCCcEE
Confidence 46789999999987631 11222222 22222 2355 5556999999653 111 223333322111 111347
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++++||++|. ++.++++.|.+.++
T Consensus 138 ~~~~Sa~~g~----------gv~~~f~~l~~~~~ 161 (169)
T cd04158 138 IQGCDARSGM----------GLYEGLDWLSRQLV 161 (169)
T ss_pred EEeCcCCCCC----------CHHHHHHHHHHHHh
Confidence 8899999998 88999999877554
No 212
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.48 E-value=0.00027 Score=65.20 Aligned_cols=91 Identities=21% Similarity=0.164 Sum_probs=53.8
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHH----HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~----~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..||+++||+|+.+...-+ ....+..+. ..++|.+++ +||+|+...+..... .+...... ..+ ..++
T Consensus 68 ~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv-~NK~Dl~~~~~~v~~--~~~~~~~~-~~~---~~~~ 140 (198)
T cd04147 68 IQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVV-GNKADSLEEERQVPA--KDALSTVE-LDW---NCGF 140 (198)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEE-EEccccccccccccH--HHHHHHHH-hhc---CCcE
Confidence 46799999999998643211 111112222 246786555 999999763111110 11111221 111 2578
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+.+||++|. ++.++++.+.+.+.
T Consensus 141 ~~~Sa~~g~----------gv~~l~~~l~~~~~ 163 (198)
T cd04147 141 VETSAKDNE----------NVLEVFKELLRQAN 163 (198)
T ss_pred EEecCCCCC----------CHHHHHHHHHHHhh
Confidence 999999987 88999998877654
No 213
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.47 E-value=0.00036 Score=62.61 Aligned_cols=85 Identities=26% Similarity=0.279 Sum_probs=51.9
Q ss_pred ccCCEEEEEEECCCCCCcchHHHH-HHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHI-LLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l-~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
..||++++|+|+++. ++.+.+ .+... .++|.++ |+||+|+.+..... ..+...+.+.+++. +++
T Consensus 76 ~~~d~~llv~d~~~~---~s~~~~~~~~~~~~~~~~~p~ii-v~NK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~ 144 (169)
T cd01892 76 AACDVACLVYDSSDP---KSFSYCAEVYKKYFMLGEIPCLF-VAAKADLDEQQQRY---EVQPDEFCRKLGLP----PPL 144 (169)
T ss_pred hcCCEEEEEEeCCCH---HHHHHHHHHHHHhccCCCCeEEE-EEEccccccccccc---ccCHHHHHHHcCCC----CCE
Confidence 589999999998763 232222 22222 2677555 49999996531111 11223344444442 357
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++||++|. ++.++++.+.+.+
T Consensus 145 ~~Sa~~~~----------~v~~lf~~l~~~~ 165 (169)
T cd01892 145 HFSSKLGD----------SSNELFTKLATAA 165 (169)
T ss_pred EEEeccCc----------cHHHHHHHHHHHh
Confidence 89999987 8888888887644
No 214
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.47 E-value=0.0003 Score=62.09 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=52.1
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHH-HHHH---HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHI-LLAR---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l-~~~~---~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|.++...-+. ...+ .+.+ ..++|.++ +.||+|+.+.... ..++..+.+..+ .++
T Consensus 70 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiv-v~nK~Dl~~~~~~----~~~~~~~~~~~~-----~~~ 139 (162)
T cd04138 70 MRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVL-VGNKCDLAARTVS----SRQGQDLAKSYG-----IPY 139 (162)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE-EEECcccccceec----HHHHHHHHHHhC-----CeE
Confidence 346899999999876322111 1112 2222 23677555 5999999763111 123334444333 479
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+++||++|. ++.++++.+.+
T Consensus 140 ~~~Sa~~~~----------gi~~l~~~l~~ 159 (162)
T cd04138 140 IETSAKTRQ----------GVEEAFYTLVR 159 (162)
T ss_pred EEecCCCCC----------CHHHHHHHHHH
Confidence 999999987 88999988865
No 215
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.47 E-value=0.00029 Score=64.41 Aligned_cols=90 Identities=21% Similarity=0.251 Sum_probs=54.1
Q ss_pred cccCCEEEEEEECCCCC-CcchHHHHHHHH----HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCC-------
Q psy15224 5 AAQMDGAILVCSAADGP-MPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF------- 72 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~~qt~e~l~~~~----~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~------- 72 (502)
+..+|++++|+|+.+.- .....+.+..+. ..+.|.+++ .||+|+.+. ... +++.+.+.....
T Consensus 84 ~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv-~NK~Dl~~~-~~~----~~~~~~~~~~~~~~~~~~~ 157 (190)
T cd00879 84 FPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLIL-GNKIDLPGA-VSE----EELRQALGLYGTTTGKGVS 157 (190)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEE-EeCCCCCCC-cCH----HHHHHHhCccccccccccc
Confidence 46789999999997531 122222322222 345786555 999999753 111 233444432111
Q ss_pred ----CCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 73 ----PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 73 ----~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
.....+++++||++|. ++.++++.|.+.
T Consensus 158 ~~~~~~~~~~~~~~Sa~~~~----------gv~e~~~~l~~~ 189 (190)
T cd00879 158 LKVSGIRPIEVFMCSVVKRQ----------GYGEAFRWLSQY 189 (190)
T ss_pred ccccCceeEEEEEeEecCCC----------ChHHHHHHHHhh
Confidence 0123578999999997 889999988653
No 216
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.46 E-value=0.00031 Score=62.14 Aligned_cols=85 Identities=19% Similarity=0.072 Sum_probs=53.1
Q ss_pred cccCCEEEEEEECCCCCCcchH-HHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR-EHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~-e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|+.....-+.. .++..+.. .+.|.+++ .||+|+...+... ++...+.+.. ..++
T Consensus 70 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv-~nK~D~~~~~~~~----~~~~~~~~~~-----~~~~ 139 (161)
T cd01863 70 YRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLV-GNKIDKENREVTR----EEGLKFARKH-----NMLF 139 (161)
T ss_pred hCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEE-EECCcccccccCH----HHHHHHHHHc-----CCEE
Confidence 4579999999998764332221 22232322 35665555 8999998431111 1233344432 3579
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+++||++|. ++.++++.+.+
T Consensus 140 ~~~Sa~~~~----------gi~~~~~~~~~ 159 (161)
T cd01863 140 IETSAKTRD----------GVQQAFEELVE 159 (161)
T ss_pred EEEecCCCC----------CHHHHHHHHHH
Confidence 999999987 88898888765
No 217
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.45 E-value=0.0007 Score=60.73 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=54.5
Q ss_pred cccCCEEEEEEECCCCCCcchHH-----HHHHHHH--hCCCeEEEEEEcCCCCChHHHHHHH---------HHHHHHHHh
Q psy15224 5 AAQMDGAILVCSAADGPMPQTRE-----HILLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EIEIRELLN 68 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e-----~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~i---------~~~i~~~l~ 68 (502)
...+|+++||.|.+.. ++.+ .+..+.. .++|. +++.||+|+.+.....+.+ .++...+.+
T Consensus 67 ~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (174)
T smart00174 67 YPDTDVFLICFSVDSP---ASFENVKEKWYPEVKHFCPNTPI-ILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAK 142 (174)
T ss_pred cCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHhhCCCCCE-EEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHH
Confidence 4679999999998753 2222 2233332 26775 4559999997632111111 123334555
Q ss_pred hcCCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 69 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 69 ~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
..+. .+++++||++|. ++.++++.+.+.
T Consensus 143 ~~~~----~~~~e~Sa~~~~----------~v~~lf~~l~~~ 170 (174)
T smart00174 143 RIGA----VKYLECSALTQE----------GVREVFEEAIRA 170 (174)
T ss_pred HcCC----cEEEEecCCCCC----------CHHHHHHHHHHH
Confidence 4443 478999999987 888888887653
No 218
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.45 E-value=0.00055 Score=60.55 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=52.6
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...+|+++||+|.+.... ....+.+..+.. .++|.++ +.||+|+.+...... ++...+.+..+ .++
T Consensus 70 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil-v~nK~Dl~~~~~~~~---~~~~~~~~~~~-----~~~ 140 (163)
T cd04136 70 IKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVL-VGNKCDLEDERVVSR---EEGQALARQWG-----CPF 140 (163)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE-EEECccccccceecH---HHHHHHHHHcC-----CeE
Confidence 356899999999876322 112222223322 2577554 599999975311111 12233333322 579
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++||++|. ++.++++.+.+.
T Consensus 141 ~~~Sa~~~~----------~v~~l~~~l~~~ 161 (163)
T cd04136 141 YETSAKSKI----------NVDEVFADLVRQ 161 (163)
T ss_pred EEecCCCCC----------CHHHHHHHHHHh
Confidence 999999987 889999888653
No 219
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.44 E-value=0.00058 Score=62.04 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=52.2
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHH-HHH---HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHIL-LAR---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~-~~~---~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...||++|+|+|+++... ...++.+. ++. ..++|. +++.||+|+.+... . +++...+.-..+......+
T Consensus 82 ~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~pi-ilv~NK~Dl~~~~~-~----~~~~~~l~l~~~~~~~~~~ 155 (181)
T PLN00223 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQDLPNAMN-A----AEITDKLGLHSLRQRHWYI 155 (181)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCE-EEEEECCCCCCCCC-H----HHHHHHhCccccCCCceEE
Confidence 467899999999986321 11122222 111 135665 45599999976411 1 2333333211111223456
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.|.+.+
T Consensus 156 ~~~Sa~~g~----------gv~e~~~~l~~~~ 177 (181)
T PLN00223 156 QSTCATSGE----------GLYEGLDWLSNNI 177 (181)
T ss_pred EeccCCCCC----------CHHHHHHHHHHHH
Confidence 789999997 8889888886643
No 220
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.43 E-value=0.00047 Score=61.02 Aligned_cols=86 Identities=21% Similarity=0.272 Sum_probs=53.3
Q ss_pred cccCCEEEEEEECCCCCCcchHH-HHHHHH--HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQTRE-HILLAR--QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e-~l~~~~--~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
...+|++++|.|+.+...-+... .+..+. ..++|.+++ .||+|+.+..... .++...+.+.++ .++++
T Consensus 72 ~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv-~nK~Dl~~~~~v~---~~~~~~~~~~~~-----~~~~~ 142 (162)
T cd04106 72 YRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLV-QTKIDLLDQAVIT---NEEAEALAKRLQ-----LPLFR 142 (162)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEE-EEChhcccccCCC---HHHHHHHHHHcC-----CeEEE
Confidence 46799999999998643222111 111122 237785555 9999997631111 123344454443 47999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+||++|. ++.++++.|..
T Consensus 143 ~Sa~~~~----------~v~~l~~~l~~ 160 (162)
T cd04106 143 TSVKDDF----------NVTELFEYLAE 160 (162)
T ss_pred EECCCCC----------CHHHHHHHHHH
Confidence 9999987 88888888754
No 221
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.43 E-value=0.00033 Score=69.39 Aligned_cols=92 Identities=21% Similarity=0.154 Sum_probs=55.9
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCC--CCCCeEEEc
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP--GNDIPIIKG 82 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~--~~~~~ii~i 82 (502)
+..||+++++++...|-.-|... .-.+.+..++| +||+|+.+. ...+....++...+...... ....|++++
T Consensus 167 ~~~aD~vlvv~~p~~gd~iq~~k----~gi~E~aDIiV-VNKaDl~~~-~~a~~~~~el~~~L~l~~~~~~~w~~pVi~v 240 (332)
T PRK09435 167 AGMVDFFLLLQLPGAGDELQGIK----KGIMELADLIV-INKADGDNK-TAARRAAAEYRSALRLLRPKDPGWQPPVLTC 240 (332)
T ss_pred HHhCCEEEEEecCCchHHHHHHH----hhhhhhhheEE-eehhcccch-hHHHHHHHHHHHHHhcccccccCCCCCEEEE
Confidence 45699999998754443333211 11122223555 999999875 22334445555555432211 123589999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
||.+|. ++.+|++.+.++++
T Consensus 241 SA~~g~----------GIdeL~~~I~~~~~ 260 (332)
T PRK09435 241 SALEGE----------GIDEIWQAIEDHRA 260 (332)
T ss_pred ECCCCC----------CHHHHHHHHHHHHH
Confidence 999987 88888888887654
No 222
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.43 E-value=0.00037 Score=76.91 Aligned_cols=83 Identities=24% Similarity=0.293 Sum_probs=57.3
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccc
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKL 86 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~ 86 (502)
.+|++++|+||+.... .......+..+|+|.+++ +||+|+.+... ... .+..+.+.++ .|++++||.+
T Consensus 85 ~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvV-lNK~Dl~~~~~-i~i---d~~~L~~~LG-----~pVvpiSA~~ 152 (772)
T PRK09554 85 DADLLINVVDASNLER--NLYLTLQLLELGIPCIVA-LNMLDIAEKQN-IRI---DIDALSARLG-----CPVIPLVSTR 152 (772)
T ss_pred CCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEE-EEchhhhhccC-cHH---HHHHHHHHhC-----CCEEEEEeec
Confidence 6899999999987532 333445677889996665 99999875312 111 2233333334 5799999999
Q ss_pred cccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 87 ALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 87 g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
|. ++++|.+.+.+..
T Consensus 153 g~----------GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GR----------GIEALKLAIDRHQ 167 (772)
T ss_pred CC----------CHHHHHHHHHHhh
Confidence 87 7888888887654
No 223
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.43 E-value=0.00023 Score=74.19 Aligned_cols=79 Identities=30% Similarity=0.314 Sum_probs=55.9
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
+..||++++|+|++.+...+..+.+.. ..+.|.++| +||+|+.+.... . . . ...+++++||
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV-~NK~DL~~~~~~--------~---~---~--~~~~~i~iSA 352 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVV-LNKADLTGEIDL--------E---E---E--NGKPVIRISA 352 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEE-EEhhhccccchh--------h---h---c--cCCceEEEEe
Confidence 567999999999988776554444433 456775555 999999764111 1 1 1 1357899999
Q ss_pred cccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 85 KLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 85 ~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++|. ++.+|++.|.+.++
T Consensus 353 ktg~----------GI~~L~~~L~~~l~ 370 (449)
T PRK05291 353 KTGE----------GIDELREAIKELAF 370 (449)
T ss_pred eCCC----------CHHHHHHHHHHHHh
Confidence 9987 89999999887654
No 224
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.42 E-value=0.0008 Score=60.10 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=53.8
Q ss_pred cccCCEEEEEEECCCCCCcchHHHH--HHHHHh------CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHI--LLARQV------GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 76 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l--~~~~~~------~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 76 (502)
+..+|++|+++|++....-+....+ .++... ++|.++ ++||+|+.+.... ..+++..+++..++
T Consensus 70 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~il-v~nK~Dl~~~~~~---~~~~~~~~~~~~~~---- 141 (172)
T cd01862 70 YRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVV-LGNKIDLEEKRQV---STKKAQQWCQSNGN---- 141 (172)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEE-EEECccccccccc---CHHHHHHHHHHcCC----
Confidence 4679999999999864321111111 112222 677554 4999999842111 11234445554442
Q ss_pred CeEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 77 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 77 ~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
.+++++|+.+|. ++.++++.+.+.
T Consensus 142 ~~~~~~Sa~~~~----------gv~~l~~~i~~~ 165 (172)
T cd01862 142 IPYFETSAKEAI----------NVEQAFETIARK 165 (172)
T ss_pred ceEEEEECCCCC----------CHHHHHHHHHHH
Confidence 679999999987 888888887654
No 225
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.41 E-value=0.00068 Score=68.58 Aligned_cols=89 Identities=18% Similarity=0.106 Sum_probs=57.2
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcccc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 85 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~ 85 (502)
..+|++++|+|+.+-...-..+....+ .+.| +++++||+|+...+...+.+.+.+.++++..++.. ..++++||+
T Consensus 62 ~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~p-iilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~--~~i~~vSAk 136 (360)
T TIGR03597 62 DSNALIVYVVDIFDFEGSLIPELKRFV--GGNP-VLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKP--VDIILVSAK 136 (360)
T ss_pred cCCcEEEEEEECcCCCCCccHHHHHHh--CCCC-EEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCc--CcEEEecCC
Confidence 467899999999765433333332222 2556 45559999997642222334444555666666531 248899999
Q ss_pred ccccCCCCCCCcccHHHHHHHHhh
Q psy15224 86 LALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 86 ~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+|. ++.+|++.+.+
T Consensus 137 ~g~----------gv~eL~~~l~~ 150 (360)
T TIGR03597 137 KGN----------GIDELLDKIKK 150 (360)
T ss_pred CCC----------CHHHHHHHHHH
Confidence 987 88899988865
No 226
>KOG1999|consensus
Probab=97.38 E-value=0.0011 Score=71.78 Aligned_cols=129 Identities=20% Similarity=0.372 Sum_probs=91.8
Q ss_pred hccccceEEEeeccCchHHHHHHHHHHHHhcC---CCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEEeCccc
Q psy15224 324 INNKKRWYVIHSYSGMEKNVQRKLIERINKLG---MQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDES 400 (502)
Q Consensus 324 ~~~~~~WYvl~t~~~~E~~v~~~L~~~~~~~~---~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~ 400 (502)
...+.+-|.++|+.|+|+.++-.|-+++.... -+-++..+|.+- =+.|||||+.......
T Consensus 161 svkDP~LW~VKC~iG~Er~~a~~LMrK~i~~~~t~~plqI~Sv~a~D-----------------~lkGyIYIEA~KqshV 223 (1024)
T KOG1999|consen 161 SVKDPNLWIVKCKIGREREVAFCLMRKFIELDKTDTPLQIKSVFAKD-----------------HLKGYIYIEADKQSHV 223 (1024)
T ss_pred CCCCCCeeEEEeccccHHHHHHHHHHHHHhhcccCCCceEEEEEecc-----------------ccceeEEEEechhHHH
Confidence 34455678899999999988877776654332 222344455442 2789999999865555
Q ss_pred eeeeeccCCeeEeccCCCCcceeCCHHHHHHHHHHHhcCCCCCCCccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEE
Q psy15224 401 WHLVKNTKKVTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVR 480 (502)
Q Consensus 401 ~~~i~~~~~v~~~l~~~~~~p~~v~~~ei~~~~~~~~~~~~~~~~~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~ 480 (502)
...|..+++++. ++..-||-.||-.++..... ...+.+|..|||..|-++|=-+.|..++..+.+|.
T Consensus 224 ~~Ai~gv~niy~------~~~~lVPikEM~dvLkV~K~-------~v~L~~gswVRiKrG~YKgDLAqVd~Vd~~~n~v~ 290 (1024)
T KOG1999|consen 224 KEAIEGVRNIYA------NRILLVPIKEMPDVLKVVKK-------VVQLSEGSWVRIKRGKYKGDLAQVDDVDENRNRVR 290 (1024)
T ss_pred HHHHhhhhhhee------ccEEEEehhHhhhhhhhhhh-------hhccCccceEEEeccccccceeeeeeecccCCEEE
Confidence 555555544443 26778999999888875532 23688999999999999999999999997655555
Q ss_pred EE
Q psy15224 481 VS 482 (502)
Q Consensus 481 v~ 482 (502)
|.
T Consensus 291 lK 292 (1024)
T KOG1999|consen 291 LK 292 (1024)
T ss_pred EE
Confidence 44
No 227
>PRK13796 GTPase YqeH; Provisional
Probab=97.37 E-value=0.00071 Score=68.53 Aligned_cols=93 Identities=18% Similarity=0.126 Sum_probs=56.5
Q ss_pred cccccCC-EEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 3 TGAAQMD-GAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 3 ~g~~~~D-~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
..+..+| .+++|||+.+-...-..+..... .+.+.+ +++||+|+.+.+...+.+.+.+..+.+..++.. ..++.
T Consensus 64 ~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpvi-LViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~--~~v~~ 138 (365)
T PRK13796 64 NGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVL-LVGNKADLLPKSVKKNKVKNWLRQEAKELGLRP--VDVVL 138 (365)
T ss_pred HhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEE-EEEEchhhCCCccCHHHHHHHHHHHHHhcCCCc--CcEEE
Confidence 3455566 89999999874433222221211 256654 459999997642112233333444555555531 35889
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+||++|. ++.+|++.+.+.
T Consensus 139 vSAk~g~----------gI~eL~~~I~~~ 157 (365)
T PRK13796 139 ISAQKGH----------GIDELLEAIEKY 157 (365)
T ss_pred EECCCCC----------CHHHHHHHHHHh
Confidence 9999987 888999988663
No 228
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.37 E-value=0.00036 Score=75.06 Aligned_cols=83 Identities=22% Similarity=0.297 Sum_probs=56.0
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcccc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 85 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~ 85 (502)
..+|++++|+|++.. ....+....+...++|.+++ +||+|+.+... .. .+...+.+.++ .|++++||+
T Consensus 71 ~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIV-lNK~Dl~~~~~-i~---~d~~~L~~~lg-----~pvv~tSA~ 138 (591)
T TIGR00437 71 EKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILA-LNLVDEAEKKG-IR---IDEEKLEERLG-----VPVVPTSAT 138 (591)
T ss_pred cCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEE-EehhHHHHhCC-Ch---hhHHHHHHHcC-----CCEEEEECC
Confidence 468999999999862 23334444556689896655 99999865311 11 12233333333 579999999
Q ss_pred ccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 86 LALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 86 ~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+|. +++++++.+.+.
T Consensus 139 tg~----------Gi~eL~~~i~~~ 153 (591)
T TIGR00437 139 EGR----------GIERLKDAIRKA 153 (591)
T ss_pred CCC----------CHHHHHHHHHHH
Confidence 987 889999988764
No 229
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.37 E-value=0.002 Score=52.54 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=59.9
Q ss_pred EEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcce-----------ecceeecCCeEEEEecC
Q psy15224 124 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRK-----------LLDQGQAGDNIGLLLRG 192 (502)
Q Consensus 124 ~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~-----------~v~~a~aG~~v~l~l~~ 192 (502)
..|-++-..+|.|+++..-|++|+|++||.+.++...+....+|+++...+. +++++.|...+-+...|
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g 82 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD 82 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence 4577788889999999999999999999999998654445678999988764 78888866666665454
Q ss_pred CCccCcccceEE
Q psy15224 193 TKREDVERGQVL 204 (502)
Q Consensus 193 ~~~~~i~~G~vl 204 (502)
++ ++..|+-+
T Consensus 83 L~--~v~aG~~~ 92 (110)
T cd03703 83 LE--KAIAGSPL 92 (110)
T ss_pred Cc--cccCCCEE
Confidence 43 33456544
No 230
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.37 E-value=0.0006 Score=60.73 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=54.3
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...+|++++|+|...... .+..+.+..+... +.| ++++.||+|+.+..... .++..++.+.++ .+++
T Consensus 71 ~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~~~~ 141 (165)
T cd01865 71 YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDERVVS---SERGRQLADQLG-----FEFF 141 (165)
T ss_pred ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCC-EEEEEECcccCcccccC---HHHHHHHHHHcC-----CEEE
Confidence 467999999999875322 1222333333332 345 55569999997642111 112233444333 4699
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++||++|. ++.+|++.+.+.+
T Consensus 142 ~~Sa~~~~----------gv~~l~~~l~~~~ 162 (165)
T cd01865 142 EASAKENI----------NVKQVFERLVDII 162 (165)
T ss_pred EEECCCCC----------CHHHHHHHHHHHH
Confidence 99999987 8899999887643
No 231
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.35 E-value=0.00094 Score=60.74 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=53.7
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHHh---CCCeEEEEEEcCCCCCh--HHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQV---GVPYIVVFLNKADMVDD--EELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~~---~i~~iiv~iNK~D~~~~--~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
...||++++|+|+++-..-+. .+.+..++.. ..| ++ |.||+|+... ++..+.+.++...+.+..+ .+
T Consensus 70 ~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-il-VgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-----~~ 142 (182)
T cd04128 70 CNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-IL-VGTKYDLFADLPPEEQEEITKQARKYAKAMK-----AP 142 (182)
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EE-EEEchhccccccchhhhhhHHHHHHHHHHcC-----CE
Confidence 467999999999876322111 2233334332 334 54 4899999642 1111122234444544432 57
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++++||++|. ++.++++.+.+.+
T Consensus 143 ~~e~SAk~g~----------~v~~lf~~l~~~l 165 (182)
T cd04128 143 LIFCSTSHSI----------NVQKIFKIVLAKA 165 (182)
T ss_pred EEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 9999999987 8888888776544
No 232
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.35 E-value=0.00046 Score=61.90 Aligned_cols=89 Identities=25% Similarity=0.253 Sum_probs=52.5
Q ss_pred cccCCEEEEEEECCCCC-CcchHHHHHH----HHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGP-MPQTREHILL----ARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~~qt~e~l~~----~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|+.+-. ..+....+.. ....++|.+++ +||+|+.+... .+ ++.+.+....+.....++
T Consensus 79 ~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv-~nK~D~~~~~~-~~----~i~~~l~~~~~~~~~~~~ 152 (173)
T cd04155 79 FENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVF-ANKQDLATAAP-AE----EIAEALNLHDLRDRTWHI 152 (173)
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEE-EECCCCccCCC-HH----HHHHHcCCcccCCCeEEE
Confidence 46789999999997521 1222222222 22346785555 99999976411 11 222222211222223568
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+++||++|. ++.++++.|.+
T Consensus 153 ~~~Sa~~~~----------gi~~~~~~l~~ 172 (173)
T cd04155 153 QACSAKTGE----------GLQEGMNWVCK 172 (173)
T ss_pred EEeECCCCC----------CHHHHHHHHhc
Confidence 899999987 89999988754
No 233
>PTZ00099 rab6; Provisional
Probab=97.35 E-value=0.00066 Score=61.39 Aligned_cols=90 Identities=22% Similarity=0.203 Sum_probs=55.5
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHH-HHHHh--CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHIL-LARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~-~~~~~--~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...||++|||+|++.... ....+++. +.... ++| ++++.||+|+.+.... -.++...+.+..+ ..++
T Consensus 50 ~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v---~~~e~~~~~~~~~-----~~~~ 120 (176)
T PTZ00099 50 IRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVI-IALVGNKTDLGDLRKV---TYEEGMQKAQEYN-----TMFH 120 (176)
T ss_pred hCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCC---CHHHHHHHHHHcC-----CEEE
Confidence 467999999999987432 22223333 33332 344 4556999999652110 0112233333322 4688
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
++||++|. ++.++++.|.+.+|.
T Consensus 121 e~SAk~g~----------nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 121 ETSAKAGH----------NIKVLFKKIAAKLPN 143 (176)
T ss_pred EEECCCCC----------CHHHHHHHHHHHHHh
Confidence 99999987 899999999887764
No 234
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.33 E-value=0.0015 Score=58.64 Aligned_cols=90 Identities=16% Similarity=0.092 Sum_probs=54.4
Q ss_pred cccCCEEEEEEECCCCCCcchH--HHHHHHH--HhCCCeEEEEEEcCCCCChHHHHHH---------HHHHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR--EHILLAR--QVGVPYIVVFLNKADMVDDEELLEL---------VEIEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~--e~l~~~~--~~~i~~iiv~iNK~D~~~~~~~~~~---------i~~~i~~~l~~~~ 71 (502)
...+|++++|+|..+.-.-+.. ..+..+. ..++|.++ +.||+|+.+....... ..++...+.+.++
T Consensus 69 ~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piiv-v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (174)
T cd04135 69 YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLL-VGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG 147 (174)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEE-EeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 4578999999998864332221 1222232 24677555 4999998654211110 0123344455444
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
. .+++.+||++|. ++.++++.+..
T Consensus 148 ~----~~~~e~Sa~~~~----------gi~~~f~~~~~ 171 (174)
T cd04135 148 A----HCYVECSALTQK----------GLKTVFDEAIL 171 (174)
T ss_pred C----CEEEEecCCcCC----------CHHHHHHHHHH
Confidence 3 468999999998 88899888754
No 235
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.33 E-value=0.00087 Score=59.80 Aligned_cols=90 Identities=21% Similarity=0.148 Sum_probs=55.6
Q ss_pred cccCCEEEEEEECCCCCCcc--hHHHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHH--------HHHHHHHHHhhcCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQ--TREHILLARQV--GVPYIVVFLNKADMVDDEELLEL--------VEIEIRELLNKYEF 72 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q--t~e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~--------i~~~i~~~l~~~~~ 72 (502)
...+|++++|+|+++...-+ ..+.+..+... ++|.+++ .||+|+.+....... ..++...+....+.
T Consensus 69 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv-~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 147 (171)
T cd00157 69 YPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILV-GTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA 147 (171)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEE-EccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC
Confidence 35799999999998632211 22234333333 4775555 999999875322110 12233444444433
Q ss_pred CCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 73 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 73 ~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
.+++.+||++|. ++.++++.+.+
T Consensus 148 ----~~~~~~Sa~~~~----------gi~~l~~~i~~ 170 (171)
T cd00157 148 ----IGYMECSALTQE----------GVKEVFEEAIR 170 (171)
T ss_pred ----eEEEEeecCCCC----------CHHHHHHHHhh
Confidence 479999999987 88999888754
No 236
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.33 E-value=0.00069 Score=62.09 Aligned_cols=89 Identities=19% Similarity=0.243 Sum_probs=55.2
Q ss_pred cccCCEEEEEEECCCCCCc-chHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMP-QTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~-qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|++....- .....+..+..+ ++| +++|.||+|+........ ++...+.+..+ .+++
T Consensus 71 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~~~~---~~~~~l~~~~~-----~~~~ 141 (191)
T cd04112 71 YRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERVVKR---EDGERLAKEYG-----VPFM 141 (191)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccchhccccCH---HHHHHHHHHcC-----CeEE
Confidence 4568999999999764321 122333344433 566 455599999964311101 12333444332 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++||++|. ++.++++.+.+.++
T Consensus 142 e~Sa~~~~----------~v~~l~~~l~~~~~ 163 (191)
T cd04112 142 ETSAKTGL----------NVELAFTAVAKELK 163 (191)
T ss_pred EEeCCCCC----------CHHHHHHHHHHHHH
Confidence 99999987 88899988876654
No 237
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.33 E-value=0.00072 Score=60.35 Aligned_cols=87 Identities=23% Similarity=0.216 Sum_probs=53.2
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..||++++|.|++++..-+ ..+.+..+.. .++|.+++ .||+|+.+.... ..++...+.+.. ..+++
T Consensus 73 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv-~nK~Dl~~~~~~---~~~~~~~~~~~~-----~~~~~ 143 (167)
T cd01867 73 YRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLV-GNKCDMEEKRVV---SKEEGEALADEY-----GIKFL 143 (167)
T ss_pred hCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEE-EECcccccccCC---CHHHHHHHHHHc-----CCEEE
Confidence 46799999999997643211 1222222332 35675555 899999753111 112233344433 25799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++||.+|. ++.++++.+.+.
T Consensus 144 ~~Sa~~~~----------~v~~~~~~i~~~ 163 (167)
T cd01867 144 ETSAKANI----------NVEEAFFTLAKD 163 (167)
T ss_pred EEeCCCCC----------CHHHHHHHHHHH
Confidence 99999987 888888877653
No 238
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.31 E-value=0.00092 Score=59.54 Aligned_cols=86 Identities=20% Similarity=0.173 Sum_probs=53.7
Q ss_pred cccCCEEEEEEECCCCCCc-chHHHHHHHHH------hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMP-QTREHILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 77 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~-qt~e~l~~~~~------~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 77 (502)
...+|++++|.|.+....- ..+..+..+.. .++|.++| .||+|+.+..+... ++...+.... ..
T Consensus 70 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv-~nK~Dl~~~~~v~~---~~~~~~~~~~-----~~ 140 (165)
T cd04140 70 ISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLV-GNKCDESHKREVSS---NEGAACATEW-----NC 140 (165)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE-EECccccccCeecH---HHHHHHHHHh-----CC
Confidence 4578999999999865432 22333444433 35775555 99999975311111 1122223222 25
Q ss_pred eEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 78 PIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 78 ~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+++++||++|. ++.++++.|.+
T Consensus 141 ~~~e~SA~~g~----------~v~~~f~~l~~ 162 (165)
T cd04140 141 AFMETSAKTNH----------NVQELFQELLN 162 (165)
T ss_pred cEEEeecCCCC----------CHHHHHHHHHh
Confidence 78999999987 89999988865
No 239
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.30 E-value=0.00099 Score=59.05 Aligned_cols=86 Identities=23% Similarity=0.230 Sum_probs=51.9
Q ss_pred ccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 6 AQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
..+|++++|.|..+.-. ....+.+..+.. .++|.+++ .||+|+.+...... .+...+.+..+ .+++
T Consensus 71 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv-~nK~Dl~~~~~~~~---~~~~~~~~~~~-----~~~~ 141 (163)
T cd04176 71 KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILV-GNKVDLESEREVSS---AEGRALAEEWG-----CPFM 141 (163)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEE-EECccchhcCccCH---HHHHHHHHHhC-----CEEE
Confidence 57999999999976322 112222222322 46775554 99999865311100 11222333222 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++||++|. ++.++++.+.+.
T Consensus 142 ~~Sa~~~~----------~v~~l~~~l~~~ 161 (163)
T cd04176 142 ETSAKSKT----------MVNELFAEIVRQ 161 (163)
T ss_pred EecCCCCC----------CHHHHHHHHHHh
Confidence 99999987 888998888653
No 240
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.29 E-value=0.0027 Score=50.78 Aligned_cols=76 Identities=20% Similarity=0.148 Sum_probs=59.7
Q ss_pred EEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc-eecceeecCCeEEEEecCCCccCcccce
Q psy15224 124 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR-KLLDQGQAGDNIGLLLRGTKREDVERGQ 202 (502)
Q Consensus 124 ~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~-~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 202 (502)
..|-+....++.|.+++..|.+|+|++||.+..+. ...+|+++...+ .++++|.||+.|.+ .|++.. -..|+
T Consensus 3 g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~----~~gkVr~l~d~~g~~v~~a~Ps~~V~I--~G~~~~-P~aGd 75 (95)
T cd03702 3 GVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGT----TYGKVRAMFDENGKRVKEAGPSTPVEI--LGLKGV-PQAGD 75 (95)
T ss_pred EEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcc----cccEEEEEECCCCCCCCEECCCCcEEE--cCCCCC-CCCCC
Confidence 45777778899999999999999999999998753 346899999876 68999999999988 454321 14566
Q ss_pred EEeC
Q psy15224 203 VLAK 206 (502)
Q Consensus 203 vl~~ 206 (502)
.+..
T Consensus 76 ~~~~ 79 (95)
T cd03702 76 KFLV 79 (95)
T ss_pred EEEE
Confidence 6543
No 241
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.0023 Score=65.47 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=68.8
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
||.-+..||+++|+||++-|..-.|.|.|.++...|.|.++-|+|..|+......+..++..+.--+..--+++ ..++
T Consensus 127 miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqG--aKlF 204 (1077)
T COG5192 127 MIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQG--AKLF 204 (1077)
T ss_pred HHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCC--ceEE
Confidence 56677889999999999999999999999999999999999999999998876667777776665554433443 5588
Q ss_pred Eccccc
Q psy15224 81 KGSAKL 86 (502)
Q Consensus 81 ~iSa~~ 86 (502)
..|+..
T Consensus 205 ylsgV~ 210 (1077)
T COG5192 205 YLSGVE 210 (1077)
T ss_pred Eecccc
Confidence 888763
No 242
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.28 E-value=0.0009 Score=61.31 Aligned_cols=91 Identities=10% Similarity=0.115 Sum_probs=54.6
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHH-HHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLARQV--GVPYIVVFLNKADMVDDEELLEL-VEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~-i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...+|++++|+|+++...-+ ....+..+... ++|.++ |.||+|+.+....... ...++..+.... ..+++
T Consensus 71 ~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piil-v~nK~Dl~~~~~~~~~v~~~~~~~~~~~~-----~~~~~ 144 (193)
T cd04118 71 YRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYL-CGTKSDLIEQDRSLRQVDFHDVQDFADEI-----KAQHF 144 (193)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEE-EEEcccccccccccCccCHHHHHHHHHHc-----CCeEE
Confidence 35799999999987642211 12233444433 577555 4999998653111001 112344444433 25789
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++||++|. ++.+|++.+.+.+
T Consensus 145 ~~Sa~~~~----------gv~~l~~~i~~~~ 165 (193)
T cd04118 145 ETSSKTGQ----------NVDELFQKVAEDF 165 (193)
T ss_pred EEeCCCCC----------CHHHHHHHHHHHH
Confidence 99999987 8888888876543
No 243
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.28 E-value=0.00049 Score=61.08 Aligned_cols=88 Identities=23% Similarity=0.223 Sum_probs=53.0
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHH-HH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLA-RQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~-~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...+|++++|.|++...+-+ .......+ .. .++|.+ ++.||+|+.+..... .++...+.+..+ .++
T Consensus 69 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-~v~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~~~ 139 (164)
T smart00173 69 MRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIV-LVGNKCDLESERVVS---TEEGKELARQWG-----CPF 139 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccceEc---HHHHHHHHHHcC-----CEE
Confidence 45689999999998632211 11111222 21 356754 459999997631111 122333444332 579
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.|.+.+
T Consensus 140 ~~~Sa~~~~----------~i~~l~~~l~~~~ 161 (164)
T smart00173 140 LETSAKERV----------NVDEAFYDLVREI 161 (164)
T ss_pred EEeecCCCC----------CHHHHHHHHHHHH
Confidence 999999987 8889998887643
No 244
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.27 E-value=0.0005 Score=61.07 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=52.3
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHH----HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~----~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...+|++++|+|.+....-+ ..+.+..+. ..++|.++ +.||+|+.+...... ++...+.+.++ .++
T Consensus 70 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil-v~nK~Dl~~~~~~~~---~~~~~~~~~~~-----~~~ 140 (164)
T cd04175 70 MKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMIL-VGNKCDLEDERVVGK---EQGQNLARQWG-----CAF 140 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE-EEECCcchhccEEcH---HHHHHHHHHhC-----CEE
Confidence 35689999999987533211 122222222 24577555 599999975311101 12233333332 579
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++||++|. ++.++++.+.+.
T Consensus 141 ~~~Sa~~~~----------~v~~~~~~l~~~ 161 (164)
T cd04175 141 LETSAKAKI----------NVNEIFYDLVRQ 161 (164)
T ss_pred EEeeCCCCC----------CHHHHHHHHHHH
Confidence 999999987 889999888653
No 245
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.27 E-value=0.0012 Score=57.61 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=54.4
Q ss_pred ccccCCEEEEEEECCCCCC-cchHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 4 GAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.+..+|++++|+|+.+... ......+..+... +.|.+ +++||+|+.+.... ..+++..+.... ..++
T Consensus 69 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~-----~~~~ 139 (159)
T cd00154 69 YYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPII-LVGNKIDLEDQRQV---STEEAQQFAKEN-----GLLF 139 (159)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEEcccccccccc---cHHHHHHHHHHc-----CCeE
Confidence 3567999999999987322 2223344444443 36754 45999999732111 113344444432 3679
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALD 108 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~ 108 (502)
+.+|+.++. ++.++++.|.
T Consensus 140 ~~~sa~~~~----------~i~~~~~~i~ 158 (159)
T cd00154 140 FETSAKTGE----------NVEELFQSLA 158 (159)
T ss_pred EEEecCCCC----------CHHHHHHHHh
Confidence 999999887 8888888764
No 246
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.26 E-value=0.00063 Score=61.85 Aligned_cols=90 Identities=20% Similarity=0.215 Sum_probs=52.0
Q ss_pred cccCCEEEEEEECCCCC-CcchHHHHH-HHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGP-MPQTREHIL-LARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~~qt~e~l~-~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...+|++|+|+|+++-- .....+++. ++.. ...| ++++.||.|+.+... .+ ++...+.........+++
T Consensus 82 ~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~l~~~~~~~~~~~~ 155 (182)
T PTZ00133 82 YQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV-LLVFANKQDLPNAMS-TT----EVTEKLGLHSVRQRNWYI 155 (182)
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCCCC-HH----HHHHHhCCCcccCCcEEE
Confidence 46799999999997521 122222332 2221 2456 555699999865311 11 222222211122223567
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++||++|. ++.++++.|.+.
T Consensus 156 ~~~Sa~tg~----------gv~e~~~~l~~~ 176 (182)
T PTZ00133 156 QGCCATTAQ----------GLYEGLDWLSAN 176 (182)
T ss_pred EeeeCCCCC----------CHHHHHHHHHHH
Confidence 789999987 889999888754
No 247
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.26 E-value=0.00065 Score=60.07 Aligned_cols=88 Identities=25% Similarity=0.262 Sum_probs=52.8
Q ss_pred ccccCCEEEEEEECCCCCC-cchHHHH-HHHH---HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 4 GAAQMDGAILVCSAADGPM-PQTREHI-LLAR---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~-~qt~e~l-~~~~---~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
..+.+|.+++|+|....-. ....+.+ .+.. ..++|.+++ +||+|+.+...... .+...+.+.++ .|
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv-~NK~D~~~~~~~~~---~~~~~~~~~~~-----~~ 138 (164)
T cd04139 68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLV-GNKCDLEDKRQVSS---EEAANLARQWG-----VP 138 (164)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEE-EEccccccccccCH---HHHHHHHHHhC-----Ce
Confidence 3567899999999875321 0011111 2222 257886555 99999976211101 12223333333 47
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++++||++|. ++.++++.+.+.
T Consensus 139 ~~~~Sa~~~~----------gi~~l~~~l~~~ 160 (164)
T cd04139 139 YVETSAKTRQ----------NVEKAFYDLVRE 160 (164)
T ss_pred EEEeeCCCCC----------CHHHHHHHHHHH
Confidence 9999999987 889998887653
No 248
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.25 E-value=0.0011 Score=58.65 Aligned_cols=87 Identities=18% Similarity=0.162 Sum_probs=54.2
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHH-HHhC--CCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLA-RQVG--VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~-~~~~--i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|++...+.+. ..++..+ ...+ +|. ++++||+|+.+.... ..++...+.+.. ..+++
T Consensus 70 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i-ilv~nK~D~~~~~~~---~~~~~~~~~~~~-----~~~~~ 140 (161)
T cd01861 70 IRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVII-VLVGNKTDLSDKRQV---STEEGEKKAKEL-----NAMFI 140 (161)
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE-EEEEEChhccccCcc---CHHHHHHHHHHh-----CCEEE
Confidence 567999999999987543222 2333333 3333 665 555999999543111 112233333332 25789
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++||.+|. ++.++++.+.+.
T Consensus 141 ~~Sa~~~~----------~v~~l~~~i~~~ 160 (161)
T cd01861 141 ETSAKAGH----------NVKELFRKIASA 160 (161)
T ss_pred EEeCCCCC----------CHHHHHHHHHHh
Confidence 99999987 899999988653
No 249
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.25 E-value=0.00096 Score=59.91 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=53.9
Q ss_pred cccCCEEEEEEECCCCC-CcchHHHHHHHHHhCC---CeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGP-MPQTREHILLARQVGV---PYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~~qt~e~l~~~~~~~i---~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...+|+++||.|+.... .....+++..+..... +.++++.||+|+.+... ......+...+.+.++ .+++
T Consensus 70 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~-~~~~~~~~~~~~~~~~-----~~~~ 143 (170)
T cd04108 70 YRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ-YALMEQDAIKLAAEMQ-----AEYW 143 (170)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc-ccccHHHHHHHHHHcC-----CeEE
Confidence 46799999999997621 1122233333332222 23555699999865311 1111223344444433 4688
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
.+||++|. ++.++++.+.+.+
T Consensus 144 e~Sa~~g~----------~v~~lf~~l~~~~ 164 (170)
T cd04108 144 SVSALSGE----------NVREFFFRVAALT 164 (170)
T ss_pred EEECCCCC----------CHHHHHHHHHHHH
Confidence 99999987 8888888876643
No 250
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.25 E-value=0.002 Score=58.17 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=53.4
Q ss_pred cccCCEEEEEEECCCCCCcc-hHH-HHHHHHH--hCCCeEEEEEEcCCCCChHHHHHHH---------HHHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TRE-HILLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EIEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e-~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~i---------~~~i~~~l~~~~ 71 (502)
...+|++|||.|.+....-+ ..+ ++..+.. .++|. |++.||+|+.+.++..+.+ .++...+.+..+
T Consensus 70 ~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~pi-ilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~ 148 (175)
T cd01874 70 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPF-LLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLK 148 (175)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhC
Confidence 45799999999998643322 222 3333332 25675 4559999986542211111 112222333322
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
..+++.+||++|. ++.++++.+..
T Consensus 149 ----~~~~~e~SA~tg~----------~v~~~f~~~~~ 172 (175)
T cd01874 149 ----AVKYVECSALTQK----------GLKNVFDEAIL 172 (175)
T ss_pred ----CcEEEEecCCCCC----------CHHHHHHHHHH
Confidence 2579999999998 88888887754
No 251
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=97.24 E-value=0.00065 Score=52.60 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=32.4
Q ss_pred ccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEE
Q psy15224 446 KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 482 (502)
Q Consensus 446 ~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~ 482 (502)
...+.+||+|.|++|+++|.+|.|.++++.++++.|+
T Consensus 6 ~~~I~~GD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Ve 42 (83)
T CHL00141 6 KMHVKIGDTVKIISGSDKGKIGEVLKIIKKSNKVIVK 42 (83)
T ss_pred eCcccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEc
Confidence 3468899999999999999999999999888776663
No 252
>COG2262 HflX GTPases [General function prediction only]
Probab=97.23 E-value=0.00062 Score=67.70 Aligned_cols=85 Identities=22% Similarity=0.216 Sum_probs=56.2
Q ss_pred ccccCCEEEEEEECCCC-CCcchHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 4 GAAQMDGAILVCSAADG-PMPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 4 g~~~~D~ailvVda~~g-~~~qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
-+..||+.+.||||++. +..|-......+..+ .+|.++ |.||+|++.++. ....+... . . +.
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~-v~NKiD~~~~~~--------~~~~~~~~-~---~-~~ 333 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIIL-VLNKIDLLEDEE--------ILAELERG-S---P-NP 333 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEE-EEecccccCchh--------hhhhhhhc-C---C-Ce
Confidence 35679999999999974 223333334455554 457555 599999987622 11222211 1 1 47
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+++||.+|. +++.|.+.|...++
T Consensus 334 v~iSA~~~~----------gl~~L~~~i~~~l~ 356 (411)
T COG2262 334 VFISAKTGE----------GLDLLRERIIELLS 356 (411)
T ss_pred EEEEeccCc----------CHHHHHHHHHHHhh
Confidence 899999998 88999999888765
No 253
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.23 E-value=0.0023 Score=58.49 Aligned_cols=93 Identities=16% Similarity=0.068 Sum_probs=55.4
Q ss_pred cccCCEEEEEEECCCCCCcchH--HHHHHHHH--hCCCeEEEEEEcCCCCChHHHHHH---------HHHHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR--EHILLARQ--VGVPYIVVFLNKADMVDDEELLEL---------VEIEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~--e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~---------i~~~i~~~l~~~~ 71 (502)
...+|+++||.|.+.--.-+.. ..+..+.. .++|. ++|.||+|+.+.....+. ..++...+.+..+
T Consensus 69 ~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~pi-ilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (189)
T cd04134 69 YADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKL-VLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN 147 (189)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 3578999999998764322222 23333433 26674 455999999764211110 0112233333332
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
..+++.+||++|. ++.++++.+.+.+.
T Consensus 148 ----~~~~~e~SAk~~~----------~v~e~f~~l~~~~~ 174 (189)
T cd04134 148 ----ALRYLECSAKLNR----------GVNEAFTEAARVAL 174 (189)
T ss_pred ----CCEEEEccCCcCC----------CHHHHHHHHHHHHh
Confidence 2679999999987 88888888776554
No 254
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.23 E-value=0.00084 Score=59.38 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=54.7
Q ss_pred cccCCEEEEEEECCCCCCcchHH-HHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQTRE-HILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e-~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|+.+..+-+... .+..+.. .++|.++ ++||+|+.+...... +....+.+..+ .+++
T Consensus 70 ~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivv-v~nK~D~~~~~~~~~---~~~~~~~~~~~-----~~~~ 140 (164)
T smart00175 70 YRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIML-VGNKSDLEDQRQVSR---EEAEAFAEEHG-----LPFF 140 (164)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEE-EEEchhcccccCCCH---HHHHHHHHHcC-----CeEE
Confidence 46799999999998754333222 2222222 3567554 599999876311111 12333444433 4699
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++|+.+|. ++.++++.+.+.+
T Consensus 141 e~Sa~~~~----------~i~~l~~~i~~~~ 161 (164)
T smart00175 141 ETSAKTNT----------NVEEAFEELAREI 161 (164)
T ss_pred EEeCCCCC----------CHHHHHHHHHHHH
Confidence 99999887 8899998887654
No 255
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.22 E-value=0.0023 Score=70.61 Aligned_cols=80 Identities=21% Similarity=0.385 Sum_probs=70.2
Q ss_pred eeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCe---eEEEEEEEEcceecceeecCCeEEEEecCCCccCc
Q psy15224 122 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTV---KTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDV 198 (502)
Q Consensus 122 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~---~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i 198 (502)
-...|..+|+.+..|.++.++|..|+|+.|..+.+.- ++. ..+|.||+.+.+++.++..|.-|++.+.+ ..++
T Consensus 695 g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R--~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~--~~d~ 770 (787)
T PRK05306 695 GQAEVREVFKVSKVGTIAGCMVTEGKIKRNAKVRVLR--DGVVIYEGELESLKRFKDDVKEVRAGYECGIGLEN--YNDI 770 (787)
T ss_pred eeEEEEEEEecCCCCeEEEEEEeeCEEecCCeEEEEe--CCEEEEEeEEehhcccCcCccEeCCCCEEEEEeec--cccC
Confidence 3567889999999999999999999999999999884 333 56799999999999999999999999985 4789
Q ss_pred ccceEEe
Q psy15224 199 ERGQVLA 205 (502)
Q Consensus 199 ~~G~vl~ 205 (502)
+.||+|-
T Consensus 771 ~~gD~ie 777 (787)
T PRK05306 771 KEGDIIE 777 (787)
T ss_pred CCCCEEE
Confidence 9999984
No 256
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.21 E-value=0.003 Score=58.16 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=65.1
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh------------HHHHHHHHHHHHHHHhhcC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD------------EELLELVEIEIRELLNKYE 71 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~------------~~~~~~i~~~i~~~l~~~~ 71 (502)
++..+|+.+++.| ..+......++..+...+.+.++ |+||+|+..+ +...+++.+.+...++..+
T Consensus 77 ~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~il-V~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 77 KFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYF-VRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEE-EEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 3567888888754 45677777888888888888555 5999999542 1234455555555555444
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCC
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 114 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~ 114 (502)
.. ..+++++|+.... .| ++..|.+.+...+|..
T Consensus 154 ~~--~p~v~~vS~~~~~----~~----~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VS--EPPVFLVSNFDPS----DY----DFPKLRETLLKDLPAH 186 (197)
T ss_pred CC--CCCEEEEeCCChh----hc----ChHHHHHHHHHHhhHH
Confidence 32 3579999997321 12 6788888888877753
No 257
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.20 E-value=0.0017 Score=57.94 Aligned_cols=86 Identities=17% Similarity=0.132 Sum_probs=52.5
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHH-HHH------HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHIL-LAR------QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 76 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~-~~~------~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 76 (502)
...+|++++|.|.+....-+. .+... ++. ..++|.++ +.||+|+...... .+++.++++..+.
T Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piil-v~nK~Dl~~~~~~----~~~~~~~~~~~~~---- 145 (170)
T cd04116 75 YRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVV-LGNKNDIPERQVS----TEEAQAWCRENGD---- 145 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEE-EEECccccccccC----HHHHHHHHHHCCC----
Confidence 356899999999886432111 11111 111 13467555 5999998643111 1244555555443
Q ss_pred CeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 77 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 77 ~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
.+++++||++|. ++.++++.+.+
T Consensus 146 ~~~~e~Sa~~~~----------~v~~~~~~~~~ 168 (170)
T cd04116 146 YPYFETSAKDAT----------NVAAAFEEAVR 168 (170)
T ss_pred CeEEEEECCCCC----------CHHHHHHHHHh
Confidence 578999999987 88888887764
No 258
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=97.20 E-value=0.00068 Score=51.50 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=31.8
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEE
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 482 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~ 482 (502)
.+..||+|.|++|+++|-+|+|.++++.++++.|+
T Consensus 6 ~I~kGD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Ve 40 (76)
T PRK12281 6 KVKKGDMVKVIAGDDKGKTGKVLAVLPKKNRVIVE 40 (76)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEc
Confidence 58899999999999999999999999888877664
No 259
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.19 E-value=0.0014 Score=58.19 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=51.6
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHHH--hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
+..+|++++|+|+++...-. -...+..+.. .++|.++| +||+|+.+..+.... +...+.... ..++++
T Consensus 73 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv-~nK~Dl~~~~~~~~~---~~~~~~~~~-----~~~~~~ 143 (164)
T cd04101 73 WESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLV-GNKMDLADKAEVTDA---QAQAFAQAN-----QLKFFK 143 (164)
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEE-EECcccccccCCCHH---HHHHHHHHc-----CCeEEE
Confidence 46799999999987632211 1222233333 35775555 999999654111111 112222222 257899
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+||.+|. ++.++++.+.+
T Consensus 144 ~Sa~~~~----------gi~~l~~~l~~ 161 (164)
T cd04101 144 TSALRGV----------GYEEPFESLAR 161 (164)
T ss_pred EeCCCCC----------ChHHHHHHHHH
Confidence 9999987 88999988765
No 260
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.19 E-value=0.0011 Score=60.76 Aligned_cols=88 Identities=22% Similarity=0.193 Sum_probs=52.8
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHHH------hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 77 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~~------~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 77 (502)
...+|++|||+|.+....-. ..+.+..+.. .++|.+ ++.||+|+.+...... .+...+.+.++ .
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lvgNK~Dl~~~~~v~~---~~~~~~~~~~~-----~ 138 (190)
T cd04144 68 IREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIM-IVGNKCDKVYEREVST---EEGAALARRLG-----C 138 (190)
T ss_pred HHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEE-EEEEChhccccCccCH---HHHHHHHHHhC-----C
Confidence 45789999999987643211 2223333322 356754 4599999975311111 12233333333 4
Q ss_pred eEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 78 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 78 ~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++++||++|. ++.++++.+.+.+
T Consensus 139 ~~~e~SAk~~~----------~v~~l~~~l~~~l 162 (190)
T cd04144 139 EFIEASAKTNV----------NVERAFYTLVRAL 162 (190)
T ss_pred EEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 78999999987 7888887776544
No 261
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.19 E-value=0.0029 Score=57.03 Aligned_cols=90 Identities=14% Similarity=0.092 Sum_probs=53.5
Q ss_pred cccCCEEEEEEECCCCCCcchH--HHHHHHHH--hCCCeEEEEEEcCCCCChHHHHHHH---------HHHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR--EHILLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EIEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~--e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~i---------~~~i~~~l~~~~ 71 (502)
...+|++|||.|.+.--.-+.. .++..+.. .++|.++ +.||+|+.+.+...+.+ .++...+.+.++
T Consensus 70 ~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piil-vgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 148 (174)
T cd01871 70 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL-VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 148 (174)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE-EeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 4579999999999863222221 23333332 2467554 59999996532111111 122233444333
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
..+++.+||++|. ++.++++.+.+
T Consensus 149 ----~~~~~e~Sa~~~~----------~i~~~f~~l~~ 172 (174)
T cd01871 149 ----AVKYLECSALTQK----------GLKTVFDEAIR 172 (174)
T ss_pred ----CcEEEEecccccC----------CHHHHHHHHHH
Confidence 2579999999997 88888888754
No 262
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.18 E-value=0.0012 Score=60.93 Aligned_cols=89 Identities=18% Similarity=0.145 Sum_probs=53.7
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHH-------HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLAR-------QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 76 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~-------~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 76 (502)
...||++++|+|.+....-+. .+.+..+. ..++|.++ +.||+|+.+.... ..+++.++.+..++
T Consensus 71 ~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piil-v~NK~Dl~~~~~~---~~~~~~~~~~~~~~---- 142 (201)
T cd04107 71 YRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLL-LANKCDLKKRLAK---DGEQMDQFCKENGF---- 142 (201)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEE-EEECCCccccccc---CHHHHHHHHHHcCC----
Confidence 357899999999876321111 11112221 14567555 5999999742111 11345556665543
Q ss_pred CeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 77 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 77 ~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
.+++++||++|. ++.++++.|.+.+
T Consensus 143 ~~~~e~Sak~~~----------~v~e~f~~l~~~l 167 (201)
T cd04107 143 IGWFETSAKEGI----------NIEEAMRFLVKNI 167 (201)
T ss_pred ceEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 579999999987 7778777776544
No 263
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.17 E-value=0.0013 Score=58.81 Aligned_cols=87 Identities=18% Similarity=0.110 Sum_probs=52.9
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...+|++++|+|++....-+. ..++..++. .++|.++ +.||+|+.+.... ..++...+++..+ .+++
T Consensus 74 ~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pviv-v~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~ 144 (168)
T cd01866 74 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIML-IGNKCDLESRREV---SYEEGEAFAKEHG-----LIFM 144 (168)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEE-EEECcccccccCC---CHHHHHHHHHHcC-----CEEE
Confidence 357899999999985322222 122333333 2567555 4999999753111 1123344444432 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++||.+|. ++.++++.+.+.
T Consensus 145 e~Sa~~~~----------~i~~~~~~~~~~ 164 (168)
T cd01866 145 ETSAKTAS----------NVEEAFINTAKE 164 (168)
T ss_pred EEeCCCCC----------CHHHHHHHHHHH
Confidence 99999987 888888777654
No 264
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.16 E-value=0.0014 Score=58.56 Aligned_cols=85 Identities=14% Similarity=0.042 Sum_probs=52.4
Q ss_pred ccCCEEEEEEECCCCCCcchHH-HHHHHHH-h-CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 6 AQMDGAILVCSAADGPMPQTRE-HILLARQ-V-GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e-~l~~~~~-~-~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
..+|++|+|+|.+.+..-+..+ .+..+.. . ++|.++ +.||+|+.+.... .+...+.+. ...+++.+
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piii-v~nK~Dl~~~~~~-----~~~~~~~~~-----~~~~~~e~ 139 (166)
T cd00877 71 IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVL-CGNKVDIKDRKVK-----AKQITFHRK-----KNLQYYEI 139 (166)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEE-EEEchhcccccCC-----HHHHHHHHH-----cCCEEEEE
Confidence 4699999999998754332222 2222322 2 577554 5999999743111 111222221 13679999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
||++|. ++.++++.|.+.+
T Consensus 140 Sa~~~~----------~v~~~f~~l~~~~ 158 (166)
T cd00877 140 SAKSNY----------NFEKPFLWLARKL 158 (166)
T ss_pred eCCCCC----------ChHHHHHHHHHHH
Confidence 999987 8888888887644
No 265
>PRK11058 GTPase HflX; Provisional
Probab=97.15 E-value=0.0015 Score=67.50 Aligned_cols=85 Identities=25% Similarity=0.186 Sum_probs=53.5
Q ss_pred cccCCEEEEEEECCCCCCcchH----HHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR----EHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~----e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..||++++|+|+++....... +.+..+...++|.++| +||+|+.+.... .+.. ...++ ..++
T Consensus 274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV-~NKiDL~~~~~~------~~~~--~~~~~----~~~v 340 (426)
T PRK11058 274 TRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLV-MNKIDMLDDFEP------RIDR--DEENK----PIRV 340 (426)
T ss_pred hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEE-EEcccCCCchhH------HHHH--HhcCC----CceE
Confidence 5679999999999875432221 2233333346776555 999999763110 0110 11122 1257
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++||++|. ++.+|++.|.+.++
T Consensus 341 ~ISAktG~----------GIdeL~e~I~~~l~ 362 (426)
T PRK11058 341 WLSAQTGA----------GIPLLFQALTERLS 362 (426)
T ss_pred EEeCCCCC----------CHHHHHHHHHHHhh
Confidence 89999987 89999999987664
No 266
>KOG1489|consensus
Probab=97.15 E-value=0.0017 Score=62.21 Aligned_cols=83 Identities=19% Similarity=0.165 Sum_probs=52.2
Q ss_pred ccCCEEEEEEECCCCC---CcchH-HHHHHHHH-----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15224 6 AQMDGAILVCSAADGP---MPQTR-EHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 76 (502)
Q Consensus 6 ~~~D~ailvVda~~g~---~~qt~-e~l~~~~~-----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 76 (502)
..|+..++|||.+.+. --|+. .....+.. ...|.+|| +||||+.+.++ +-++++.+.++-
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liV-aNKiD~~eae~------~~l~~L~~~lq~---- 341 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIV-ANKIDLPEAEK------NLLSSLAKRLQN---- 341 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEE-EeccCchhHHH------HHHHHHHHHcCC----
Confidence 4589999999998762 22222 22222222 22456665 99999975422 123445555442
Q ss_pred CeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 77 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 77 ~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
..++|+||+++. ++.+|++.|..
T Consensus 342 ~~V~pvsA~~~e----------gl~~ll~~lr~ 364 (366)
T KOG1489|consen 342 PHVVPVSAKSGE----------GLEELLNGLRE 364 (366)
T ss_pred CcEEEeeecccc----------chHHHHHHHhh
Confidence 259999999987 78888888765
No 267
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.15 E-value=0.0013 Score=61.63 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=53.7
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHHhC-----CCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQVG-----VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~~-----i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
+..||++|+|+|++..-. .+..+.+..+.... .+.++++.||+|+.+.... ..++...+.+..+ .+
T Consensus 71 ~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v---~~~~~~~~~~~~~-----~~ 142 (215)
T cd04109 71 IYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV---KDDKHARFAQANG-----ME 142 (215)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc---CHHHHHHHHHHcC-----CE
Confidence 357999999999886321 22222233333321 1235666999999753111 1123334444433 46
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++.+||++|. ++.++++.+.+.+
T Consensus 143 ~~~iSAktg~----------gv~~lf~~l~~~l 165 (215)
T cd04109 143 SCLVSAKTGD----------RVNLLFQQLAAEL 165 (215)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHH
Confidence 8899999987 8889988887654
No 268
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.14 E-value=0.0013 Score=58.57 Aligned_cols=87 Identities=20% Similarity=0.223 Sum_probs=52.9
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...+|++++|+|+++.-. .+..+.+..+.. .++|.++ +.||+|+.+..... .++...+.+.. ..+++
T Consensus 72 ~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~ii-v~nK~Dl~~~~~~~---~~~~~~~~~~~-----~~~~~ 142 (166)
T cd01869 72 YRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLL-VGNKCDLTDKRVVD---YSEAQEFADEL-----GIPFL 142 (166)
T ss_pred hCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEE-EEEChhcccccCCC---HHHHHHHHHHc-----CCeEE
Confidence 356999999999986321 112223333333 2467555 58999986531110 12233344432 25799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++||++|. ++.++++.+.+.
T Consensus 143 ~~Sa~~~~----------~v~~~~~~i~~~ 162 (166)
T cd01869 143 ETSAKNAT----------NVEQAFMTMARE 162 (166)
T ss_pred EEECCCCc----------CHHHHHHHHHHH
Confidence 99999987 888888887653
No 269
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.14 E-value=0.0012 Score=60.05 Aligned_cols=92 Identities=12% Similarity=0.115 Sum_probs=53.8
Q ss_pred cccCCEEEEEEECCCCCCcchH-H-HHHHHHH--hCCCeEEEEEEcCCCCChHHH-HHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR-E-HILLARQ--VGVPYIVVFLNKADMVDDEEL-LELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~-e-~l~~~~~--~~i~~iiv~iNK~D~~~~~~~-~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...||++++|+|+++...-+.. . .+..... .++|.+ ++.||+|+.+.... ......+...+.+..+. .++
T Consensus 70 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~----~~~ 144 (187)
T cd04132 70 YPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIM-LVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA----FAY 144 (187)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEeChhhhhCccccCCcCHHHHHHHHHHcCC----cEE
Confidence 4679999999999864322221 1 2222221 357755 45999999653100 00011234444544433 378
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+.+||++|. ++.++++.+.+.+
T Consensus 145 ~e~Sa~~~~----------~v~~~f~~l~~~~ 166 (187)
T cd04132 145 LECSAKTME----------NVEEVFDTAIEEA 166 (187)
T ss_pred EEccCCCCC----------CHHHHHHHHHHHH
Confidence 999999987 7778777766543
No 270
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.14 E-value=0.0012 Score=58.68 Aligned_cols=87 Identities=23% Similarity=0.209 Sum_probs=51.8
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHHH-----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~~-----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
+..+|++++|+|++....-+ ....+..+.. .++|.++ +.||+|+.+.... . .++...+.+..+ .+
T Consensus 69 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piil-v~nK~Dl~~~~~v-~--~~~~~~~~~~~~-----~~ 139 (165)
T cd04146 69 IRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVIL-VGNKADLLHYRQV-S--TEEGEKLASELG-----CL 139 (165)
T ss_pred HHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEE-EEECCchHHhCcc-C--HHHHHHHHHHcC-----CE
Confidence 35689999999998753322 1222233332 2677555 4999998643110 0 122333443333 47
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
++++||++|. .++.++++.+.+
T Consensus 140 ~~e~Sa~~~~---------~~v~~~f~~l~~ 161 (165)
T cd04146 140 FFEVSAAEDY---------DGVHSVFHELCR 161 (165)
T ss_pred EEEeCCCCCc---------hhHHHHHHHHHH
Confidence 9999999873 268888887764
No 271
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.12 E-value=0.0021 Score=69.02 Aligned_cols=80 Identities=20% Similarity=0.411 Sum_probs=69.3
Q ss_pred eeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCe---eEEEEEEEEcceecceeecCCeEEEEecCCCccCc
Q psy15224 122 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTV---KTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDV 198 (502)
Q Consensus 122 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~---~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i 198 (502)
-...|..+|+.+..|.++.++|.+|+|+.|..+.+.. ++. ..+|.|++.++++++++..|+-|++.+.+ ..++
T Consensus 493 g~a~v~~vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r--~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~--~~~~ 568 (587)
T TIGR00487 493 GQAEVRQVFNVPKIGNIAGCYVTEGVIKRGNPLRVIR--DGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKN--YNDI 568 (587)
T ss_pred eeEEEEEEEecCCCCEEEEEEEecCEEecCCeEEEEe--CCEEEEeccchHhhccCccccEECCCCEEEEEEec--cccC
Confidence 3566789999888899999999999999999999885 332 45789999999999999999999999986 4789
Q ss_pred ccceEEe
Q psy15224 199 ERGQVLA 205 (502)
Q Consensus 199 ~~G~vl~ 205 (502)
+.||+|-
T Consensus 569 ~~gD~i~ 575 (587)
T TIGR00487 569 KEGDIIE 575 (587)
T ss_pred CCCCEEE
Confidence 9999885
No 272
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.12 E-value=0.0018 Score=55.54 Aligned_cols=86 Identities=24% Similarity=0.281 Sum_probs=54.1
Q ss_pred cccCCEEEEEEECCCCCCcchHHH-----HHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREH-----ILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~-----l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...+|++++|+|+..+...++... +......++|.++ ++||+|+.+.+...... ........ ...++
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv-v~nk~D~~~~~~~~~~~---~~~~~~~~----~~~~~ 137 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIIL-VGNKIDLPEERVVSEEE---LAEQLAKE----LGVPY 137 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEE-EEeccccccccchHHHH---HHHHHHhh----cCCcE
Confidence 467999999999998655444332 2333456677554 59999998752211110 11122211 24789
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALD 108 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~ 108 (502)
+++|+.++. ++.++++.|.
T Consensus 138 ~~~s~~~~~----------~i~~~~~~l~ 156 (157)
T cd00882 138 FETSAKTGE----------NVEELFEELA 156 (157)
T ss_pred EEEecCCCC----------ChHHHHHHHh
Confidence 999999886 7888888764
No 273
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.11 E-value=0.0017 Score=58.63 Aligned_cols=83 Identities=23% Similarity=0.260 Sum_probs=52.4
Q ss_pred cccCCEEEEEEECCCCCCcchHHHH----HHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHI----LLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 76 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l----~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 76 (502)
...+|++++|.|+++ +++.+++ ..+.. .+.| +++|.||+|+.+..... .++...+.+..+
T Consensus 84 ~~~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~v~---~~~~~~~~~~~~----- 151 (180)
T cd04127 84 FRDAMGFLLIFDLTN---EQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQRQVS---EEQAKALADKYG----- 151 (180)
T ss_pred hCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcCccC---HHHHHHHHHHcC-----
Confidence 467999999999986 3333322 22322 2455 45559999997531111 123344454433
Q ss_pred CeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 77 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 77 ~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
.+++++||++|. ++.++++.|.+
T Consensus 152 ~~~~e~Sak~~~----------~v~~l~~~l~~ 174 (180)
T cd04127 152 IPYFETSAATGT----------NVEKAVERLLD 174 (180)
T ss_pred CeEEEEeCCCCC----------CHHHHHHHHHH
Confidence 479999999987 88888887764
No 274
>PTZ00369 Ras-like protein; Provisional
Probab=97.10 E-value=0.0017 Score=59.38 Aligned_cols=88 Identities=22% Similarity=0.188 Sum_probs=52.5
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...+|++++|+|+++..+ .+..+.+..+.. .++|.++ +.||+|+.+...... .+...+.+.++ .++
T Consensus 74 ~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piii-v~nK~Dl~~~~~i~~---~~~~~~~~~~~-----~~~ 144 (189)
T PTZ00369 74 MRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMIL-VGNKCDLDSERQVST---GEGQELAKSFG-----IPF 144 (189)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE-EEECcccccccccCH---HHHHHHHHHhC-----CEE
Confidence 457899999999986432 122222222222 2667555 599999865311101 12223333322 579
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+.+||++|. ++.++++.|.+.+
T Consensus 145 ~e~Sak~~~----------gi~~~~~~l~~~l 166 (189)
T PTZ00369 145 LETSAKQRV----------NVDEAFYELVREI 166 (189)
T ss_pred EEeeCCCCC----------CHHHHHHHHHHHH
Confidence 999999987 8888888776554
No 275
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.10 E-value=0.0013 Score=58.80 Aligned_cols=96 Identities=23% Similarity=0.119 Sum_probs=51.7
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCC-CCCCe
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP-GNDIP 78 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~-~~~~~ 78 (502)
...||++++|+|+...-. ...+..+..+.. .++|.++| +||+|+.+... ..++.+.+ .+..+.-. ....+
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv-~NK~Dl~~~~~-~~~i~~~~--~l~~~~~~~~~~~~ 139 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVL-ANKQDKKNALL-GADVIEYL--SLEKLVNENKSLCH 139 (167)
T ss_pred HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEE-EeCCCCcCCCC-HHHHHHhc--CcccccCCCCceEE
Confidence 467999999999986321 222333333222 36775555 99999976411 11122211 01111100 11367
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHh
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALD 108 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~ 108 (502)
++++||++|..... +.++.+-+++|.
T Consensus 140 ~~~~Sa~~g~~~~~----~~g~~~~~~wl~ 165 (167)
T cd04161 140 IEPCSAIEGLGKKI----DPSIVEGLRWLL 165 (167)
T ss_pred EEEeEceeCCCCcc----ccCHHHHHHHHh
Confidence 89999999731000 027888888775
No 276
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.10 E-value=0.0014 Score=61.56 Aligned_cols=86 Identities=27% Similarity=0.264 Sum_probs=53.0
Q ss_pred cCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 7 QMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 7 ~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
.+|++++|+|+++.-. ....+.+..+.. .++|.++| .||+|+.+...... ++...+.... ..++++
T Consensus 72 ~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV-~NK~Dl~~~~~v~~---~~~~~~a~~~-----~~~~~e 142 (221)
T cd04148 72 QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILV-GNKSDLARSREVSV---QEGRACAVVF-----DCKFIE 142 (221)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEE-EEChhccccceecH---HHHHHHHHHc-----CCeEEE
Confidence 7999999999987422 112333333333 35775555 99999976411111 1122233322 246899
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+||.+|. ++.++++.+.+.+
T Consensus 143 ~SA~~~~----------gv~~l~~~l~~~~ 162 (221)
T cd04148 143 TSAGLQH----------NVDELLEGIVRQI 162 (221)
T ss_pred ecCCCCC----------CHHHHHHHHHHHH
Confidence 9999987 8888888876654
No 277
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.09 E-value=0.0012 Score=59.21 Aligned_cols=89 Identities=17% Similarity=0.117 Sum_probs=53.3
Q ss_pred cccCCEEEEEEECCCCCCc--chHHHHHHHHH--hCCCeEEEEEEcCCCCChHHHHH---------HHHHHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPMP--QTREHILLARQ--VGVPYIVVFLNKADMVDDEELLE---------LVEIEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~--qt~e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~---------~i~~~i~~~l~~~~ 71 (502)
+..+|++|+|.|..+--.- .....+..+.. .++|. +++.||+|+.+...... -..++...+.+..+
T Consensus 69 ~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 147 (173)
T cd04130 69 YPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPI-ILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG 147 (173)
T ss_pred cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC
Confidence 4689999999998864322 22223333333 35675 55599999965321100 01122334444333
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHh
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 108 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~ 108 (502)
. .+++++||++|. ++.++++.+.
T Consensus 148 ~----~~~~e~Sa~~~~----------~v~~lf~~~~ 170 (173)
T cd04130 148 A----CEYIECSALTQK----------NLKEVFDTAI 170 (173)
T ss_pred C----CeEEEEeCCCCC----------CHHHHHHHHH
Confidence 2 479999999987 8888888764
No 278
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.09 E-value=0.0012 Score=58.27 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=55.3
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|++++..-+. .+.+..+.. .++|. +++.||+|+...... ..+++..+.+..+ .+++
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-----~~~~ 140 (161)
T cd04113 70 YRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVV-ILVGNKSDLADQREV---TFLEASRFAQENG-----LLFL 140 (161)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEEchhcchhccC---CHHHHHHHHHHcC-----CEEE
Confidence 467999999999988654333 223333332 36674 555999999753111 1123344454433 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
.+||++|. ++.++++.+.+
T Consensus 141 ~~Sa~~~~----------~i~~~~~~~~~ 159 (161)
T cd04113 141 ETSALTGE----------NVEEAFLKCAR 159 (161)
T ss_pred EEECCCCC----------CHHHHHHHHHH
Confidence 99999987 88999988764
No 279
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.09 E-value=0.0018 Score=57.03 Aligned_cols=87 Identities=24% Similarity=0.214 Sum_probs=53.4
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...+|++++|+|+.++-.-+ ....+..+.. .++|.++ +.||+|+.+....-. +++..+.+..+ .+++
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piii-v~nK~D~~~~~~~~~---~~~~~~~~~~~-----~~~~ 140 (162)
T cd04123 70 YRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVI-VGNKIDLERQRVVSK---SEAEEYAKSVG-----AKHF 140 (162)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEE-EEECcccccccCCCH---HHHHHHHHHcC-----CEEE
Confidence 45789999999998754322 2222222222 2566555 599999975311101 23333444333 4688
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++|+.+|. ++.++++.+.+.
T Consensus 141 ~~s~~~~~----------gi~~~~~~l~~~ 160 (162)
T cd04123 141 ETSAKTGK----------GIEELFLSLAKR 160 (162)
T ss_pred EEeCCCCC----------CHHHHHHHHHHH
Confidence 99999987 889999887653
No 280
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.08 E-value=0.0026 Score=57.45 Aligned_cols=88 Identities=22% Similarity=0.253 Sum_probs=55.9
Q ss_pred ccCCEEEEEEECCCC-CCcchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCC-CCCCeE
Q psy15224 6 AQMDGAILVCSAADG-PMPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP-GNDIPI 79 (502)
Q Consensus 6 ~~~D~ailvVda~~g-~~~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~-~~~~~i 79 (502)
..+|++|+|||+.+- -..+.++.+..+.. .++|.+|+ +||.|+.+... . +++...+.-..+. ...+.+
T Consensus 80 ~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl-~NK~D~~~~~~-~----~~i~~~l~l~~l~~~~~~~v 153 (175)
T PF00025_consen 80 QNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILIL-ANKQDLPDAMS-E----EEIKEYLGLEKLKNKRPWSV 153 (175)
T ss_dssp TTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEE-EESTTSTTSST-H----HHHHHHTTGGGTTSSSCEEE
T ss_pred cccceeEEEEecccceeecccccchhhhcchhhcccceEEEE-eccccccCcch-h----hHHHhhhhhhhcccCCceEE
Confidence 468999999999863 22444554433322 35675554 99999977411 1 2333333222222 346789
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+++||.+|. ++.+.+++|.+
T Consensus 154 ~~~sa~~g~----------Gv~e~l~WL~~ 173 (175)
T PF00025_consen 154 FSCSAKTGE----------GVDEGLEWLIE 173 (175)
T ss_dssp EEEBTTTTB----------THHHHHHHHHH
T ss_pred EeeeccCCc----------CHHHHHHHHHh
Confidence 999999987 88998888865
No 281
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.08 E-value=0.0013 Score=59.03 Aligned_cols=43 Identities=23% Similarity=0.113 Sum_probs=34.3
Q ss_pred CEEEEEEECCCCCCcchHHHHHH--HHHhCCCeEEEEEEcCCCCCh
Q psy15224 9 DGAILVCSAADGPMPQTREHILL--ARQVGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 9 D~ailvVda~~g~~~qt~e~l~~--~~~~~i~~iiv~iNK~D~~~~ 52 (502)
|++++|+||...+.....+.... +...+.|.++| +||+|+++.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlV-lNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLV-LNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEE-EehhhcCCH
Confidence 89999999999888877777666 44456786665 999999875
No 282
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.07 E-value=0.0017 Score=58.37 Aligned_cols=87 Identities=23% Similarity=0.237 Sum_probs=53.7
Q ss_pred cccCCEEEEEEECCCCCCcchH-HHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR-EHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~-e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...+|++++|.|.++...-++. +....+.. .++|.++ +.||+|+.+.... . .++...+.+.. ..++
T Consensus 71 ~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piil-vgNK~Dl~~~~~v-~--~~~~~~~a~~~-----~~~~ 141 (172)
T cd04141 71 MRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVL-VGNKVDLESQRQV-T--TEEGRNLAREF-----NCPF 141 (172)
T ss_pred hhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEE-EEEChhhhhcCcc-C--HHHHHHHHHHh-----CCEE
Confidence 4578999999999875543332 22222322 3577544 5999998653111 0 11233344433 3589
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+.+||++|. ++.++++.+...
T Consensus 142 ~e~Sa~~~~----------~v~~~f~~l~~~ 162 (172)
T cd04141 142 FETSAALRH----------YIDDAFHGLVRE 162 (172)
T ss_pred EEEecCCCC----------CHHHHHHHHHHH
Confidence 999999987 788888877653
No 283
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.04 E-value=0.0025 Score=58.84 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=53.6
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHHH--hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
...+|++++|+|+++...-+ ..+.+..+.. -.+|.+ ++.||+|+.+..... .++...+.+..+ .+++.
T Consensus 76 ~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~pii-vVgNK~Dl~~~~~~~---~~~~~~~~~~~~-----~~~~e 146 (199)
T cd04110 76 YRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKV-LVGNKNDDPERKVVE---TEDAYKFAGQMG-----ISLFE 146 (199)
T ss_pred hCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECcccccccccC---HHHHHHHHHHcC-----CEEEE
Confidence 35689999999998643211 2223333332 235644 459999997631111 123334444332 57999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+||++|. ++.++++.|.+.+
T Consensus 147 ~Sa~~~~----------gi~~lf~~l~~~~ 166 (199)
T cd04110 147 TSAKENI----------NVEEMFNCITELV 166 (199)
T ss_pred EECCCCc----------CHHHHHHHHHHHH
Confidence 9999987 8888888876544
No 284
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.04 E-value=0.0028 Score=60.64 Aligned_cols=90 Identities=21% Similarity=0.109 Sum_probs=54.5
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHHH------------hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLARQ------------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~~------------~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~ 71 (502)
...+|++|||.|.+..-.-+ ....+..+.. .++|.++ +.||+|+....+ ...+++.+++...
T Consensus 69 ~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIi-vgNK~Dl~~~~~---v~~~ei~~~~~~~- 143 (247)
T cd04143 69 ILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVI-CGNKADRDFPRE---VQRDEVEQLVGGD- 143 (247)
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEE-EEECccchhccc---cCHHHHHHHHHhc-
Confidence 45789999999998632111 1122222221 2567555 599999975211 0112344444321
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
...+++++||++|. ++.++++.|.....
T Consensus 144 ---~~~~~~evSAktg~----------gI~elf~~L~~~~~ 171 (247)
T cd04143 144 ---ENCAYFEVSAKKNS----------NLDEMFRALFSLAK 171 (247)
T ss_pred ---CCCEEEEEeCCCCC----------CHHHHHHHHHHHhc
Confidence 13679999999987 88999999877543
No 285
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.04 E-value=0.0025 Score=55.92 Aligned_cols=86 Identities=26% Similarity=0.271 Sum_probs=53.6
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHH-H---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLAR-Q---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~-~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...+|++++|+|.+.... .+....+..+. . .+.|.+ +++||+|+.+.... ..+++..+.+..+ .++
T Consensus 68 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~~-----~~~ 138 (160)
T cd00876 68 IRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIV-LVGNKCDLENERQV---SKEEGKALAKEWG-----CPF 138 (160)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECCccccccee---cHHHHHHHHHHcC-----CcE
Confidence 457899999999876322 12222222222 2 256654 55999999763111 1123444555433 579
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+++|+.++. ++.++++.|.+
T Consensus 139 ~~~S~~~~~----------~i~~l~~~l~~ 158 (160)
T cd00876 139 IETSAKDNI----------NIDEVFKLLVR 158 (160)
T ss_pred EEeccCCCC----------CHHHHHHHHHh
Confidence 999999987 88999988865
No 286
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.04 E-value=0.0021 Score=57.10 Aligned_cols=87 Identities=20% Similarity=0.146 Sum_probs=52.6
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...+|++++|+|+.+...-+. .+.+..+.. .++| ++++.||.|+.+.... ..++...+.... ..+++
T Consensus 73 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~~~~~ 143 (165)
T cd01868 73 YRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAV---PTEEAKAFAEKN-----GLSFI 143 (165)
T ss_pred HCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccccC---CHHHHHHHHHHc-----CCEEE
Confidence 356899999999985322111 112222222 2456 5555999999753111 112333344332 35799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++||++|. ++.++++.+.+.
T Consensus 144 ~~Sa~~~~----------~v~~l~~~l~~~ 163 (165)
T cd01868 144 ETSALDGT----------NVEEAFKQLLTE 163 (165)
T ss_pred EEECCCCC----------CHHHHHHHHHHH
Confidence 99999987 889999888654
No 287
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.03 E-value=0.0031 Score=68.88 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=70.3
Q ss_pred CCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCC-eeEEEEEEEEcceecceeecCCeEEEEecCCCccC
Q psy15224 119 DGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDT-VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKRED 197 (502)
Q Consensus 119 ~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~-~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~ 197 (502)
...-.+.|..+|+.+. |.++.++|.+|+|+.|..+.++-.... ...+|.|++.+.+++.++..|.-|++.+.+ ..+
T Consensus 647 ~~~g~a~v~~vF~~~k-~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~--~~d 723 (742)
T CHL00189 647 VPIGEAEVKTVFPLAK-RFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEE--FQL 723 (742)
T ss_pred eeceeEEeeEEEecCC-CEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeC--CCC
Confidence 3445677899999887 999999999999999999998842211 246789999999999999999999999985 678
Q ss_pred cccceEEe
Q psy15224 198 VERGQVLA 205 (502)
Q Consensus 198 i~~G~vl~ 205 (502)
++.||+|-
T Consensus 724 ~~~gD~ie 731 (742)
T CHL00189 724 WQSGDKIH 731 (742)
T ss_pred CCcCCEEE
Confidence 99999884
No 288
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=96.99 E-value=0.0055 Score=54.93 Aligned_cols=91 Identities=20% Similarity=0.170 Sum_probs=52.6
Q ss_pred ccccCCEEEEEEECCCCCC-cchHHH-HHHHHH--hCCCeEEEEEEcCCCCChHHHHHHH---------HHHHHHHHhhc
Q psy15224 4 GAAQMDGAILVCSAADGPM-PQTREH-ILLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EIEIRELLNKY 70 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~-~qt~e~-l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~i---------~~~i~~~l~~~ 70 (502)
....+|++++|.|.+.--. .+..++ +..+.. .++|.+ ++.||+|+.+.....+.+ ..+...+.+.+
T Consensus 69 ~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~ 147 (175)
T cd01870 69 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKI 147 (175)
T ss_pred ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHc
Confidence 4567999999999874211 111111 222222 367754 459999987542211111 11222333333
Q ss_pred CCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 71 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 71 ~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+ ..+++++||++|. ++.++++.+..
T Consensus 148 ~----~~~~~~~Sa~~~~----------~v~~lf~~l~~ 172 (175)
T cd01870 148 G----AFGYMECSAKTKE----------GVREVFEMATR 172 (175)
T ss_pred C----CcEEEEeccccCc----------CHHHHHHHHHH
Confidence 2 2579999999987 89999988865
No 289
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.99 E-value=0.0019 Score=57.73 Aligned_cols=87 Identities=22% Similarity=0.229 Sum_probs=52.3
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHH----HHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLA----RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~----~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...+|.++||+|......-+. ..+...+ ...++|.+++ .||+|+.+.... ..++...+.+..+ ..++
T Consensus 70 ~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv-~nK~D~~~~~~~---~~~~~~~~~~~~~----~~~~ 141 (168)
T cd04177 70 IKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLV-GNKADLEDDRQV---SREDGVSLSQQWG----NVPF 141 (168)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEE-EEChhccccCcc---CHHHHHHHHHHcC----CceE
Confidence 356899999999886422111 1112222 2346785554 999999653111 1112333444333 2689
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+++||++|. ++.++++.+..
T Consensus 142 ~~~SA~~~~----------~i~~~f~~i~~ 161 (168)
T cd04177 142 YETSARKRT----------NVDEVFIDLVR 161 (168)
T ss_pred EEeeCCCCC----------CHHHHHHHHHH
Confidence 999999987 78888887765
No 290
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.96 E-value=0.0034 Score=55.84 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=51.6
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...+|+++||+|++....-+ ..+.+..+.. .+.| ++++.||+|+.+.... ..++...+.+.. ..+++
T Consensus 72 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~~~~~ 142 (166)
T cd04122 72 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRDV---TYEEAKQFADEN-----GLLFL 142 (166)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCc---CHHHHHHHHHHc-----CCEEE
Confidence 46799999999998632211 1223333322 2345 5555999999764111 112333444432 25799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
.+||++|. ++.++++.+..
T Consensus 143 e~Sa~~~~----------~i~e~f~~l~~ 161 (166)
T cd04122 143 ECSAKTGE----------NVEDAFLETAK 161 (166)
T ss_pred EEECCCCC----------CHHHHHHHHHH
Confidence 99999987 78887766653
No 291
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=96.95 E-value=0.0016 Score=53.64 Aligned_cols=36 Identities=22% Similarity=0.454 Sum_probs=32.3
Q ss_pred cccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEE
Q psy15224 447 ILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 482 (502)
Q Consensus 447 ~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~ 482 (502)
..+..||.|.|++|+++|.+|.|.++++.++++.|+
T Consensus 44 ~~IkkGD~V~VisG~~KGk~GkV~~V~~~~~~V~Ve 79 (120)
T PRK01191 44 LPVRKGDTVKVMRGDFKGEEGKVVEVDLKRGRIYVE 79 (120)
T ss_pred ceEeCCCEEEEeecCCCCceEEEEEEEcCCCEEEEe
Confidence 358999999999999999999999999988877664
No 292
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.93 E-value=0.0031 Score=56.46 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=52.8
Q ss_pred cccCCEEEEEEECCCCCCcchH-HHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR-EHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~-e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...+|++++|+|++....-+.. ..+..+.. .++|.+++ .||+|+.+...... ++...+.+.. ..++
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv-~nK~Dl~~~~~~~~---~~~~~~~~~~-----~~~~ 143 (170)
T cd04115 73 YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILV-GNKCDLREQIQVPT---DLAQRFADAH-----SMPL 143 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEE-EECccchhhcCCCH---HHHHHHHHHc-----CCcE
Confidence 3578999999999876543333 23334433 24776555 99999865311111 1223333332 2578
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+.+||+++.+. .++.+++..+..
T Consensus 144 ~e~Sa~~~~~~-------~~i~~~f~~l~~ 166 (170)
T cd04115 144 FETSAKDPSEN-------DHVEAIFMTLAH 166 (170)
T ss_pred EEEeccCCcCC-------CCHHHHHHHHHH
Confidence 99999984322 267777776654
No 293
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=96.91 E-value=0.0027 Score=56.62 Aligned_cols=95 Identities=20% Similarity=0.215 Sum_probs=51.2
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHH--HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCC-CCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLAR--QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF-PGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~--~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~-~~~~~~ii 80 (502)
...||++++|+|+.+... ...++.+..+. ..++|.++ +.||+|+.+. ...+ ++...+....+ ....++++
T Consensus 65 ~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piil-v~NK~Dl~~~-~~~~----~i~~~~~~~~~~~~~~~~~~ 138 (164)
T cd04162 65 LSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVV-LANKQDLPAA-RSVQ----EIHKELELEPIARGRRWILQ 138 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEE-EEeCcCCcCC-CCHH----HHHHHhCChhhcCCCceEEE
Confidence 467999999999876431 22223233232 24677555 5999998764 1111 22222211112 12246788
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
.+||++.-+.. +++++.++++.+.+
T Consensus 139 ~~Sa~~~~s~~----~~~~v~~~~~~~~~ 163 (164)
T cd04162 139 GTSLDDDGSPS----RMEAVKDLLSQLIN 163 (164)
T ss_pred EeeecCCCChh----HHHHHHHHHHHHhc
Confidence 99998722111 11377888777653
No 294
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=96.90 E-value=0.011 Score=54.23 Aligned_cols=92 Identities=14% Similarity=0.069 Sum_probs=53.2
Q ss_pred cccCCEEEEEEECCCCCCcchH-H-HHHHHHH--hCCCeEEEEEEcCCCCChHHHHHHH---------HHHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR-E-HILLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EIEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~-e-~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~i---------~~~i~~~l~~~~ 71 (502)
...||++|+|.|.+.--.-+.. . .+..+.. .++|.++ +.||.|+.+.....+.+ .++...+.+..+
T Consensus 72 ~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piil-vgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 150 (191)
T cd01875 72 YPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILL-VGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH 150 (191)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEE-EEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 3579999999998763221111 1 1121221 3677555 59999996531111111 112233343333
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
..+++.+||++|. ++.++++.+.+.+
T Consensus 151 ----~~~~~e~SAk~g~----------~v~e~f~~l~~~~ 176 (191)
T cd01875 151 ----AVKYLECSALNQD----------GVKEVFAEAVRAV 176 (191)
T ss_pred ----CcEEEEeCCCCCC----------CHHHHHHHHHHHH
Confidence 2579999999987 8888888876644
No 295
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=96.90 E-value=0.0027 Score=65.85 Aligned_cols=67 Identities=22% Similarity=0.186 Sum_probs=44.2
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
.+..+|++++|+|++.+...++. .+..+...+.|.++ |+||+|+.+. + ...+.+.++ .+++.+|
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIl-V~NK~Dl~~~-~--------~~~~~~~~~-----~~~~~vS 342 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFIL-VLNKIDLKIN-S--------LEFFVSSKV-----LNSSNLS 342 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEE-EEECccCCCc-c--------hhhhhhhcC-----CceEEEE
Confidence 45679999999999887655544 44555556778555 4999999753 1 111222222 4688999
Q ss_pred ccc
Q psy15224 84 AKL 86 (502)
Q Consensus 84 a~~ 86 (502)
|++
T Consensus 343 ak~ 345 (442)
T TIGR00450 343 AKQ 345 (442)
T ss_pred Eec
Confidence 987
No 296
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=96.86 E-value=0.0042 Score=57.43 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=50.7
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...||++|||.|.++.-.-+. .+.+..+.. .++| ++++.||+|+.+..+... .+..++.+... ..+++
T Consensus 70 ~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v~~---~~~~~~a~~~~----~~~~~ 141 (202)
T cd04120 70 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREISR---QQGEKFAQQIT----GMRFC 141 (202)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccccCH---HHHHHHHHhcC----CCEEE
Confidence 357999999999987432222 222333433 2466 455599999965311111 12233333321 25789
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
.+||++|. ++.++++.+.+
T Consensus 142 etSAktg~----------gV~e~F~~l~~ 160 (202)
T cd04120 142 EASAKDNF----------NVDEIFLKLVD 160 (202)
T ss_pred EecCCCCC----------CHHHHHHHHHH
Confidence 99999997 66666665543
No 297
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.85 E-value=0.0029 Score=56.04 Aligned_cols=87 Identities=18% Similarity=0.155 Sum_probs=51.5
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHH--------hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQ--------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 75 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~--------~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 75 (502)
...+|++|+|+|+++...-+. .+.+..+.. .+.| ++++.||+|+.+.... ..++...+....+
T Consensus 70 ~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~---- 141 (168)
T cd04119 70 YKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDLTKHRAV---SEDEGRLWAESKG---- 141 (168)
T ss_pred hccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCce-EEEEEEchhccccccc---CHHHHHHHHHHcC----
Confidence 357999999999986422111 122222222 2355 5555999999742110 0112223333322
Q ss_pred CCeEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 76 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 76 ~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
.+++++||++|. ++.++++.|.+.
T Consensus 142 -~~~~~~Sa~~~~----------gi~~l~~~l~~~ 165 (168)
T cd04119 142 -FKYFETSACTGE----------GVNEMFQTLFSS 165 (168)
T ss_pred -CeEEEEECCCCC----------CHHHHHHHHHHH
Confidence 578999999987 888998887653
No 298
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.84 E-value=0.0096 Score=47.70 Aligned_cols=75 Identities=20% Similarity=0.164 Sum_probs=57.6
Q ss_pred EEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc-eecceeecCCeEEEEecCCCccCcccce
Q psy15224 124 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR-KLLDQGQAGDNIGLLLRGTKREDVERGQ 202 (502)
Q Consensus 124 ~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~-~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 202 (502)
..|-+.-..++.|.+++.-|.+|+|++||.+..+. ...+|+++...+ ..+.+|.|++.+.+ .|++ .....|+
T Consensus 3 g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~----~~GkVr~~~d~~g~~v~~a~Ps~~v~i--~g~~-~~p~aGd 75 (95)
T cd03701 3 GTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGG----TYGKIRTMVDENGKALLEAGPSTPVEI--LGLK-DVPKAGD 75 (95)
T ss_pred EEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECC----ccceEEEEECCCCCCccccCCCCCEEE--eeec-CCccCCC
Confidence 45677777899999999999999999999998752 457899988765 68999999999866 4433 3345555
Q ss_pred EEe
Q psy15224 203 VLA 205 (502)
Q Consensus 203 vl~ 205 (502)
.+.
T Consensus 76 ~~~ 78 (95)
T cd03701 76 GVL 78 (95)
T ss_pred EEE
Confidence 543
No 299
>KOG0092|consensus
Probab=96.82 E-value=0.005 Score=54.83 Aligned_cols=91 Identities=21% Similarity=0.307 Sum_probs=64.1
Q ss_pred ccCCEEEEEEECCCCC-CcchHHHHHHHHHhCCCeEEE--EEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 6 AQMDGAILVCSAADGP-MPQTREHILLARQVGVPYIVV--FLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 6 ~~~D~ailvVda~~g~-~~qt~e~l~~~~~~~i~~iiv--~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
..|++||+|-|.++-- +.+.+..+..+....-|.+++ |=||+|+.+. +-.++ +...+...-+ ..++-
T Consensus 76 RgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~----ea~~yAe~~g-----ll~~E 146 (200)
T KOG0092|consen 76 RGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFE----EAQAYAESQG-----LLFFE 146 (200)
T ss_pred cCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHH----HHHHHHHhcC-----CEEEE
Confidence 4689999999998633 344555666666655565555 6799999873 22222 3445555433 47999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcCCCCC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN 115 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~ 115 (502)
.||++|. ++.+++..|.+.+|..+
T Consensus 147 TSAKTg~----------Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 147 TSAKTGE----------NVNEIFQAIAEKLPCSD 170 (200)
T ss_pred Eeccccc----------CHHHHHHHHHHhccCcc
Confidence 9999998 89999999998887543
No 300
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0079 Score=61.94 Aligned_cols=80 Identities=19% Similarity=0.451 Sum_probs=68.7
Q ss_pred eEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCe--eEEEEEEEEcceecceeecCCeEEEEecCCCccCccc
Q psy15224 123 LLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTV--KTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 200 (502)
Q Consensus 123 ~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~--~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~ 200 (502)
...+..+|..++.|.++.++|..|.++.|..+.+.- ++.. ..+|.|++.+++++.++.+|.-|++.++| ..+++.
T Consensus 415 ~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~r-d~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~--~~di~~ 491 (509)
T COG0532 415 LAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVR-DGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN--YRDIKE 491 (509)
T ss_pred ceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEe-CCeEEEeeEEEeeeccCccHhHhccCcEEEEEecC--cccCCC
Confidence 455788888999999999999999999999998873 1222 36899999999999999999999999986 678888
Q ss_pred ceEEe
Q psy15224 201 GQVLA 205 (502)
Q Consensus 201 G~vl~ 205 (502)
||+|-
T Consensus 492 gD~le 496 (509)
T COG0532 492 GDILE 496 (509)
T ss_pred CCEEE
Confidence 98874
No 301
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=96.77 E-value=0.0043 Score=57.29 Aligned_cols=86 Identities=16% Similarity=0.056 Sum_probs=52.7
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHH--hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
...+|++|||+|+.....-+. +..+..+.. .++|.++| .||+|+.+.... . +.+ .+.+.. .++++.
T Consensus 65 ~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilv-gNK~Dl~~~~v~-~---~~~-~~~~~~-----~~~~~e 133 (200)
T smart00176 65 YIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLC-GNKVDVKDRKVK-A---KSI-TFHRKK-----NLQYYD 133 (200)
T ss_pred hcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEE-EECcccccccCC-H---HHH-HHHHHc-----CCEEEE
Confidence 357899999999987543222 222233333 46775555 999998643111 1 111 222222 367999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+||++|. ++.++++.|...+
T Consensus 134 ~SAk~~~----------~v~~~F~~l~~~i 153 (200)
T smart00176 134 ISAKSNY----------NFEKPFLWLARKL 153 (200)
T ss_pred EeCCCCC----------CHHHHHHHHHHHH
Confidence 9999987 7888887776544
No 302
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.77 E-value=0.0041 Score=57.35 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=51.9
Q ss_pred CCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccc
Q psy15224 8 MDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKL 86 (502)
Q Consensus 8 ~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~ 86 (502)
+|.+++|+|+.+|..-+.. + .......-+++ +||+|+.+. ....+.+ .+.++.+.. ..+++.+||++
T Consensus 113 ~~~~i~vvD~~~~~~~~~~-~---~~qi~~ad~~~-~~k~d~~~~~~~~~~~~----~~~~~~~~~---~~~i~~~Sa~~ 180 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPRK-G---GPGITRSDLLV-INKIDLAPMVGADLGVM----ERDAKKMRG---EKPFIFTNLKT 180 (199)
T ss_pred hCcEEEEEEcchhhhhhhh-h---HhHhhhccEEE-EEhhhccccccccHHHH----HHHHHHhCC---CCCEEEEECCC
Confidence 6889999999887653221 1 11222223565 999999863 2222323 333333322 47899999999
Q ss_pred cccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 87 ALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 87 g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
|. ++.++++.+.+++
T Consensus 181 g~----------gi~el~~~i~~~~ 195 (199)
T TIGR00101 181 KE----------GLDTVIDWIEHYA 195 (199)
T ss_pred CC----------CHHHHHHHHHhhc
Confidence 98 8999999987643
No 303
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.76 E-value=0.0036 Score=56.53 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=52.0
Q ss_pred cccCCEEEEEEECCCCCCcchH-HHH-HHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR-EHI-LLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~-e~l-~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...+|.++++.|++....-+.. +.+ .++.. .++|.++ ++||+|+.+.+.... .++..+...++ .++
T Consensus 70 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~il-v~NK~Dl~~~~~~~~---~~~~~~~~~~~-----~~~ 140 (180)
T cd04137 70 SIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVL-VGNKSDLHTQRQVST---EEGKELAESWG-----AAF 140 (180)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE-EEEchhhhhcCccCH---HHHHHHHHHcC-----CeE
Confidence 4568999999999875332221 111 22222 3567555 599999865311111 12333333322 579
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.+.+.+
T Consensus 141 ~~~Sa~~~~----------gv~~l~~~l~~~~ 162 (180)
T cd04137 141 LESSARENE----------NVEEAFELLIEEI 162 (180)
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHH
Confidence 999999987 7778777776543
No 304
>PLN03110 Rab GTPase; Provisional
Probab=96.70 E-value=0.0051 Score=57.59 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=52.6
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...+|++++|+|.++...-+. ...+..+.. .++|.+++ .||+|+.+.....+ ++...+.... ..+++
T Consensus 82 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv-~nK~Dl~~~~~~~~---~~~~~l~~~~-----~~~~~ 152 (216)
T PLN03110 82 YRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMA-GNKSDLNHLRSVAE---EDGQALAEKE-----GLSFL 152 (216)
T ss_pred hCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEE-EEChhcccccCCCH---HHHHHHHHHc-----CCEEE
Confidence 457899999999976432222 223333433 35775554 99999865311111 1222222222 36899
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++||++|. ++.++++.+.+.+
T Consensus 153 e~SA~~g~----------~v~~lf~~l~~~i 173 (216)
T PLN03110 153 ETSALEAT----------NVEKAFQTILLEI 173 (216)
T ss_pred EEeCCCCC----------CHHHHHHHHHHHH
Confidence 99999987 7778777776544
No 305
>PRK00004 rplX 50S ribosomal protein L24; Reviewed
Probab=96.69 E-value=0.003 Score=51.42 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=31.8
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEE
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 482 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~ 482 (502)
.+..||+|.|++|+++|.+|+|.++++.++++.|+
T Consensus 4 ~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve 38 (105)
T PRK00004 4 KIKKGDTVIVIAGKDKGKRGKVLKVLPKKNKVIVE 38 (105)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEc
Confidence 57899999999999999999999999988877664
No 306
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=96.69 E-value=0.012 Score=53.14 Aligned_cols=92 Identities=20% Similarity=0.174 Sum_probs=55.5
Q ss_pred cccCCEEEEEEECCCCCCcch--HHHHHHHHH--hCCCeEEEEEEcCCCCChHHH-------HHHHHHHHHHHHhhcCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKADMVDDEEL-------LELVEIEIRELLNKYEFP 73 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt--~e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~-------~~~i~~~i~~~l~~~~~~ 73 (502)
...||++|||.|.+.-.+-+. +..+..++. .++| +++|-||+|+.+.... .....++...+.+..+.
T Consensus 70 ~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~- 147 (176)
T cd04133 70 YRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA- 147 (176)
T ss_pred cCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC-
Confidence 567999999999986433222 223333432 3566 4555999999653110 00112234445544332
Q ss_pred CCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 74 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 74 ~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
.+++.+||++|. ++.++++.+.+.+
T Consensus 148 ---~~~~E~SAk~~~----------nV~~~F~~~~~~~ 172 (176)
T cd04133 148 ---AAYIECSSKTQQ----------NVKAVFDAAIKVV 172 (176)
T ss_pred ---CEEEECCCCccc----------CHHHHHHHHHHHH
Confidence 368999999998 8888888877643
No 307
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=96.69 E-value=0.0031 Score=51.77 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=30.4
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEE
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 482 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~ 482 (502)
.+..||.|+|+.|+++|.+|.|.+++..+.+|.|+
T Consensus 41 ~IkkGD~V~Vi~Gk~KGk~GkV~~V~~~~~~V~Ve 75 (114)
T TIGR01080 41 PVRKGDKVRIMRGDFKGHEGKVSKVDLKRYRIYVE 75 (114)
T ss_pred eeecCCEEEEecCCCCCCEEEEEEEEcCCCEEEEc
Confidence 68999999999999999999999999776655443
No 308
>KOG1423|consensus
Probab=96.69 E-value=0.0072 Score=57.81 Aligned_cols=98 Identities=21% Similarity=0.279 Sum_probs=56.2
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHH-HhCCCeEEEEEEcCCCCChHHHHHHH------------HHHHHHHHhhc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKADMVDDEELLELV------------EIEIRELLNKY 70 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~-~~~i~~iiv~iNK~D~~~~~~~~~~i------------~~~i~~~l~~~ 70 (502)
++..||.+++|+||..--....-+.|..+. -..+|.|+| +||+|.......+-.. +-++.+-+...
T Consensus 152 a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lv-mnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~ 230 (379)
T KOG1423|consen 152 AAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILV-MNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDV 230 (379)
T ss_pred HHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceee-ccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccC
Confidence 577899999999998521111122233333 356887777 9999987642211111 11111111110
Q ss_pred ----------CCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 71 ----------EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 71 ----------~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
|.. ..-.++++||++|. ++.+|-++|....|+
T Consensus 231 p~~~~~~~~~gws-hfe~vF~vSaL~G~----------GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 231 PSDEKWRTICGWS-HFERVFMVSALYGE----------GIKDLKQYLMSQAPP 272 (379)
T ss_pred CcccccccccCcc-cceeEEEEeccccc----------CHHHHHHHHHhcCCC
Confidence 010 12248999999987 888888888776653
No 309
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=96.68 E-value=0.007 Score=55.36 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=54.5
Q ss_pred ccCCEEEEEEECCCCCC-cchHHHHHHHHH--hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 6 AQMDGAILVCSAADGPM-PQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~-~qt~e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
..||++|||.|.+.... ...+..+..+.. .++|.++ +-||+|+.+.... ..++...+.+..+ .+++.+
T Consensus 77 ~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piil-VGNK~DL~~~~~v---~~~~~~~~a~~~~-----~~~~e~ 147 (189)
T cd04121 77 RGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKIL-VGNRLHLAFKRQV---ATEQAQAYAERNG-----MTFFEV 147 (189)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEE-EEECccchhccCC---CHHHHHHHHHHcC-----CEEEEe
Confidence 57999999999986432 222333333432 3567555 5899999653111 1234455555433 579999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
||++|. ++.++++.+.+.+
T Consensus 148 SAk~g~----------~V~~~F~~l~~~i 166 (189)
T cd04121 148 SPLCNF----------NITESFTELARIV 166 (189)
T ss_pred cCCCCC----------CHHHHHHHHHHHH
Confidence 999998 7778777776533
No 310
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.68 E-value=0.007 Score=55.12 Aligned_cols=88 Identities=20% Similarity=0.216 Sum_probs=50.7
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|++..-. ....+++..+... +.| ++++.||.|+.+....-. .+...+....+ .+++
T Consensus 70 ~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v~~---~~~~~~~~~~~-----~~~~ 140 (188)
T cd04125 70 YRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVI-KVIVANKSDLVNNKVVDS---NIAKSFCDSLN-----IPFF 140 (188)
T ss_pred ccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccCCH---HHHHHHHHHcC-----CeEE
Confidence 467999999999986322 1111222333322 345 566699999975311101 11222333322 4799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
.+||++|. ++.++++.+.+.+
T Consensus 141 evSa~~~~----------~i~~~f~~l~~~~ 161 (188)
T cd04125 141 ETSAKQSI----------NVEEAFILLVKLI 161 (188)
T ss_pred EEeCCCCC----------CHHHHHHHHHHHH
Confidence 99999987 7777777665443
No 311
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.64 E-value=0.0082 Score=55.77 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=49.5
Q ss_pred CCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccc
Q psy15224 8 MDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKL 86 (502)
Q Consensus 8 ~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~ 86 (502)
.+..+.|+|+..+...+. ......+.+.+++ +||+|+.+. ....+.. ...++... ...|++++||++
T Consensus 124 ~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv-~NK~Dl~~~~~~~~~~~----~~~l~~~~---~~~~i~~~Sa~~ 191 (207)
T TIGR00073 124 EHMRVVLLSVTEGDDKPL----KYPGMFKEADLIV-INKADLAEAVGFDVEKM----KADAKKIN---PEAEIILMSLKT 191 (207)
T ss_pred cCeEEEEEecCcccchhh----hhHhHHhhCCEEE-EEHHHccccchhhHHHH----HHHHHHhC---CCCCEEEEECCC
Confidence 445567888876543222 2223345565665 999999864 1222222 23333332 247899999999
Q ss_pred cccCCCCCCCcccHHHHHHHHhh
Q psy15224 87 ALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 87 g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
|. ++.++++.+.+
T Consensus 192 g~----------gv~~l~~~i~~ 204 (207)
T TIGR00073 192 GE----------GLDEWLEFLEG 204 (207)
T ss_pred CC----------CHHHHHHHHHH
Confidence 87 89999998865
No 312
>PLN03118 Rab family protein; Provisional
Probab=96.60 E-value=0.0071 Score=56.32 Aligned_cols=88 Identities=17% Similarity=0.064 Sum_probs=52.1
Q ss_pred cccCCEEEEEEECCCCCCcchH-HHH-HHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR-EHI-LLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~-e~l-~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
+..+|+++||+|+.....-+.. +.+ ..+.. .+.+.++| .||+|+......- .++...+.... ..+
T Consensus 83 ~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv-~NK~Dl~~~~~i~---~~~~~~~~~~~-----~~~ 153 (211)
T PLN03118 83 YRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLV-GNKVDRESERDVS---REEGMALAKEH-----GCL 153 (211)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-EECccccccCccC---HHHHHHHHHHc-----CCE
Confidence 4578999999999864322221 111 11221 34565554 8999997531110 11223333332 257
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++++||++|. ++.++++.|.+.+
T Consensus 154 ~~e~SAk~~~----------~v~~l~~~l~~~~ 176 (211)
T PLN03118 154 FLECSAKTRE----------NVEQCFEELALKI 176 (211)
T ss_pred EEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 9999999987 8888888877654
No 313
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.54 E-value=0.0047 Score=57.57 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=51.9
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH-h--CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ-V--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~-~--~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...+|++++|.|.++.-. ..-.+.+..+.. . ..+.++++.||+|+.+...... ++...+.+..+ .+++
T Consensus 73 ~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~---~~~~~~~~~~~-----~~~~ 144 (211)
T cd04111 73 YRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTR---EEAEKLAKDLG-----MKYI 144 (211)
T ss_pred hcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCH---HHHHHHHHHhC-----CEEE
Confidence 357899999999886321 111122222222 1 1233555589999976311111 12333444333 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
.+||++|. ++.++++.|.+.+
T Consensus 145 e~Sak~g~----------~v~e~f~~l~~~~ 165 (211)
T cd04111 145 ETSARTGD----------NVEEAFELLTQEI 165 (211)
T ss_pred EEeCCCCC----------CHHHHHHHHHHHH
Confidence 99999987 7888888776544
No 314
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=96.53 E-value=0.0069 Score=53.63 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=52.3
Q ss_pred ccCCEEEEEEECCCCCCcch-HHHHHHHHH----hCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 6 AQMDGAILVCSAADGPMPQT-REHILLARQ----VGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt-~e~l~~~~~----~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
..+|++++|.|.++--.-+. ...+..+.. .++| ++++.||+|+... +.... .++..++.+..+ ..++
T Consensus 64 ~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~~~v~--~~~~~~~~~~~~----~~~~ 136 (158)
T cd04103 64 SWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIP-LILVGTQDAISESNPRVID--DARARQLCADMK----RCSY 136 (158)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcCCcccC--HHHHHHHHHHhC----CCcE
Confidence 46899999999887433333 333333433 2456 4455999998531 11111 112233333221 3679
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+.+||++|. ++.++++.+.+
T Consensus 137 ~e~SAk~~~----------~i~~~f~~~~~ 156 (158)
T cd04103 137 YETCATYGL----------NVERVFQEAAQ 156 (158)
T ss_pred EEEecCCCC----------CHHHHHHHHHh
Confidence 999999997 88898888764
No 315
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle. This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.
Probab=96.53 E-value=0.0044 Score=50.26 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=31.6
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEE
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 482 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~ 482 (502)
.+..||+|.|++|+.+|-+|+|.++++.++++.|+
T Consensus 3 ~ikkGD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Ve 37 (104)
T TIGR01079 3 KIKKGDTVKVISGKDKGKRGKVLKVLPKTNKVIVE 37 (104)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEC
Confidence 47899999999999999999999999888877764
No 316
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=96.44 E-value=0.012 Score=53.99 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=53.6
Q ss_pred cccCCEEEEEEECCCCCCcc-hHH-HHHHHHH--hCCCeEEEEEEcCCCCChH--H--------------HHHHHHHHHH
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TRE-HILLARQ--VGVPYIVVFLNKADMVDDE--E--------------LLELVEIEIR 64 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e-~l~~~~~--~~i~~iiv~iNK~D~~~~~--~--------------~~~~i~~~i~ 64 (502)
...||+++||.|.++...-+ .+. .+..++. -++|. ++|.||+|+.+.. . ...-..++..
T Consensus 85 ~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~pi-ilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~ 163 (195)
T cd01873 85 YGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPV-ILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGR 163 (195)
T ss_pred CCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhcccccccccccCCccCHHHHH
Confidence 45799999999987643211 211 2333333 25664 4559999986410 0 0000112344
Q ss_pred HHHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 65 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 65 ~~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
.+.+..+ .+++.+||++|. ++.++++.+.+
T Consensus 164 ~~a~~~~-----~~~~E~SAkt~~----------~V~e~F~~~~~ 193 (195)
T cd01873 164 AVAKELG-----IPYYETSVVTQF----------GVKDVFDNAIR 193 (195)
T ss_pred HHHHHhC-----CEEEEcCCCCCC----------CHHHHHHHHHH
Confidence 5555544 479999999987 88888887754
No 317
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=96.43 E-value=0.014 Score=51.69 Aligned_cols=86 Identities=19% Similarity=0.167 Sum_probs=50.7
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...+|++++|.|...--. ......+..+... ++|.++ +-||+|+.+...... ++...+.+..+ .+++
T Consensus 70 ~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iil-vgnK~Dl~~~~~v~~---~~~~~~~~~~~-----~~~~ 140 (161)
T cd04117 70 YRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKIL-IGNKADEEQKRQVGD---EQGNKLAKEYG-----MDFF 140 (161)
T ss_pred hcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEE-EEECcccccccCCCH---HHHHHHHHHcC-----CEEE
Confidence 356899999999875311 1111222222222 456444 599999965311111 22333333332 5789
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
++||++|. ++.++++.|.+
T Consensus 141 e~Sa~~~~----------~v~~~f~~l~~ 159 (161)
T cd04117 141 ETSACTNS----------NIKESFTRLTE 159 (161)
T ss_pred EEeCCCCC----------CHHHHHHHHHh
Confidence 99999987 88888888764
No 318
>PLN03108 Rab family protein; Provisional
Probab=96.41 E-value=0.011 Score=54.91 Aligned_cols=86 Identities=17% Similarity=0.140 Sum_probs=50.0
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...+|++++|+|+.....-+ ..+.+..+.. .++|.++ +.||+|+.+.... ..++...+++..+ .+++
T Consensus 76 ~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piii-v~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~ 146 (210)
T PLN03108 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML-IGNKCDLAHRRAV---STEEGEQFAKEHG-----LIFM 146 (210)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEE-EEECccCccccCC---CHHHHHHHHHHcC-----CEEE
Confidence 34689999999997632211 1122222222 2566555 5999999753110 0123344454433 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
.+||+++. ++.++++.+..
T Consensus 147 e~Sa~~~~----------~v~e~f~~l~~ 165 (210)
T PLN03108 147 EASAKTAQ----------NVEEAFIKTAA 165 (210)
T ss_pred EEeCCCCC----------CHHHHHHHHHH
Confidence 99999987 77776655543
No 319
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=96.37 E-value=0.024 Score=51.53 Aligned_cols=90 Identities=9% Similarity=0.022 Sum_probs=52.8
Q ss_pred cccCCEEEEEEECCCCCCcch--HHHHHHHHH--hCCCeEEEEEEcCCCCChHHHH---------HHHHHHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKADMVDDEELL---------ELVEIEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt--~e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~---------~~i~~~i~~~l~~~~ 71 (502)
...||+++||.|.+....-+. ...+..+.. -+.|.+ +|.||+|+.+..... .-..++...+.+..+
T Consensus 74 ~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~pii-lVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 152 (182)
T cd04172 74 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML-LVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG 152 (182)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEE-EEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 467999999999876432221 122223332 256654 459999986421100 001234455565554
Q ss_pred CCCCCCeEEEccccccccCCCCCCCccc-HHHHHHHHhh
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQS-ILSLSKALDT 109 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~-i~~Ll~~l~~ 109 (502)
. .+++.+||++|. + +.++++.+..
T Consensus 153 ~----~~~~E~SAk~~~----------n~v~~~F~~~~~ 177 (182)
T cd04172 153 A----ATYIECSALQSE----------NSVRDIFHVATL 177 (182)
T ss_pred C----CEEEECCcCCCC----------CCHHHHHHHHHH
Confidence 3 479999999987 6 7777776544
No 320
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=96.36 E-value=0.012 Score=55.13 Aligned_cols=95 Identities=13% Similarity=0.099 Sum_probs=52.2
Q ss_pred cccCCEEEEEEECCCCCCcchH-HHHHHHHH---hCCCeEEEEEEcCCCCChHH----------------HHHHHHHHHH
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR-EHILLARQ---VGVPYIVVFLNKADMVDDEE----------------LLELVEIEIR 64 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~-e~l~~~~~---~~i~~iiv~iNK~D~~~~~~----------------~~~~i~~~i~ 64 (502)
...+|++|+|+|+++...-+.. +.+..+.. .++|. |+|.||+|+.+.+. ...-..++..
T Consensus 65 ~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~pi-IlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~ 143 (220)
T cd04126 65 CRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLF-AVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAK 143 (220)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECcccccccccccccccccccccccccccCCHHHHH
Confidence 3569999999999863221111 12222222 34564 45599999975100 0011112334
Q ss_pred HHHhhcCCC---------CCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 65 ELLNKYEFP---------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 65 ~~l~~~~~~---------~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
.+.+..+.. ....+++.+||++|. ++.++++.+.+.
T Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~----------~V~elf~~i~~~ 188 (220)
T cd04126 144 AFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY----------NVDELFEYLFNL 188 (220)
T ss_pred HHHHHhCccccccccccccccceEEEeeCCCCC----------CHHHHHHHHHHH
Confidence 444443310 012579999999997 777777776543
No 321
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=96.34 E-value=0.011 Score=53.88 Aligned_cols=91 Identities=13% Similarity=0.051 Sum_probs=53.7
Q ss_pred cccCCEEEEEEECCCCCCcch-H-HHHHHHHHh--CCCeEEEEEEcCCCCChH--------HHHHHHHHHHHHHHhhcCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-R-EHILLARQV--GVPYIVVFLNKADMVDDE--------ELLELVEIEIRELLNKYEF 72 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~-e~l~~~~~~--~i~~iiv~iNK~D~~~~~--------~~~~~i~~~i~~~l~~~~~ 72 (502)
.+.+|+++++.|.+..-.-+. . ..+..+... .+|.+ ++.||+|+.+.. .++.. .++...+.+.++.
T Consensus 70 ~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~pii-lvgnK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 147 (187)
T cd04129 70 YSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVI-LVGLKKDLRQDAVAKEEYRTQRFVP-IQQGKRVAKEIGA 147 (187)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEeeChhhhhCcccccccccCCcCC-HHHHHHHHHHhCC
Confidence 467899999999875322111 1 233333322 56744 459999985420 01110 1123334444443
Q ss_pred CCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 73 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 73 ~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
.+++.+||++|. ++.++++.+.+.+
T Consensus 148 ----~~~~e~Sa~~~~----------~v~~~f~~l~~~~ 172 (187)
T cd04129 148 ----KKYMECSALTGE----------GVDDVFEAATRAA 172 (187)
T ss_pred ----cEEEEccCCCCC----------CHHHHHHHHHHHH
Confidence 478999999998 8889988886543
No 322
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.34 E-value=0.028 Score=50.76 Aligned_cols=91 Identities=9% Similarity=-0.008 Sum_probs=52.2
Q ss_pred cccCCEEEEEEECCCCCCcch--HHHHHHHHH--hCCCeEEEEEEcCCCCChHHHHH---------HHHHHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKADMVDDEELLE---------LVEIEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt--~e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~---------~i~~~i~~~l~~~~ 71 (502)
...||++|||.|.+....-+. ..++..+.. -++|. ++|.||+|+.+...... -..++..++.+..+
T Consensus 70 ~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~i-ilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~ 148 (178)
T cd04131 70 YPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKV-LLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLG 148 (178)
T ss_pred cCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCE-EEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence 457999999999976432221 223333333 25664 45589999864211000 01123445555544
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
. .+++.+||++|.| ++.++++.+.+
T Consensus 149 ~----~~~~E~SA~~~~~---------~v~~~F~~~~~ 173 (178)
T cd04131 149 A----EIYLECSAFTSEK---------SVRDIFHVATM 173 (178)
T ss_pred C----CEEEECccCcCCc---------CHHHHHHHHHH
Confidence 3 3789999999861 27777776654
No 323
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=96.29 E-value=0.012 Score=55.11 Aligned_cols=86 Identities=13% Similarity=0.022 Sum_probs=51.7
Q ss_pred cccCCEEEEEEECCCCCCcchH-HHHHHHH--HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR-EHILLAR--QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~-e~l~~~~--~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
...+|++|+|+|.+....-+.. ..+..+. ..++|.++| .||+|+.+..... +++ .+.+.. ..+++.
T Consensus 83 ~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilv-gNK~Dl~~~~v~~----~~~-~~~~~~-----~~~~~e 151 (219)
T PLN03071 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLC-GNKVDVKNRQVKA----KQV-TFHRKK-----NLQYYE 151 (219)
T ss_pred cccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEE-EEchhhhhccCCH----HHH-HHHHhc-----CCEEEE
Confidence 3578999999999875332221 2222222 235775555 9999986431111 122 222221 357899
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+||++|. ++.++++.|.+.+
T Consensus 152 ~SAk~~~----------~i~~~f~~l~~~~ 171 (219)
T PLN03071 152 ISAKSNY----------NFEKPFLYLARKL 171 (219)
T ss_pred cCCCCCC----------CHHHHHHHHHHHH
Confidence 9999987 7888887776544
No 324
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.27 E-value=0.019 Score=54.40 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=31.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 40 IVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 40 iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++|.||+|+++.++ +..+.. ..+++++||.+|. ++.+|++.+.+.+
T Consensus 179 ~iiV~NK~Dl~~~~~--------~~~~~~-------~~~~~~~SA~~g~----------gi~~l~~~i~~~L 225 (233)
T cd01896 179 CLYVYNKIDLISIEE--------LDLLAR-------QPNSVVISAEKGL----------NLDELKERIWDKL 225 (233)
T ss_pred EEEEEECccCCCHHH--------HHHHhc-------CCCEEEEcCCCCC----------CHHHHHHHHHHHh
Confidence 445599999987522 111211 1358899999987 8889998887644
No 325
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.13 E-value=0.041 Score=51.96 Aligned_cols=90 Identities=13% Similarity=0.047 Sum_probs=51.3
Q ss_pred cccCCEEEEEEECCCCCCcch--HHHHHHHHH--hCCCeEEEEEEcCCCCChHHHH---------HHHHHHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKADMVDDEELL---------ELVEIEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt--~e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~---------~~i~~~i~~~l~~~~ 71 (502)
...||+++||.|.+..-.-+. ...+..+.. -+.|. |+|.||+|+.+..... .-..++..++.+..+
T Consensus 82 ~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~pi-ilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~ 160 (232)
T cd04174 82 YSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRI-LLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG 160 (232)
T ss_pred cCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCE-EEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC
Confidence 467999999999986432221 122233332 25664 4559999985420000 001134555666555
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHh
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 108 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~ 108 (502)
. .+++.+||++|. .++.++++.+.
T Consensus 161 ~----~~~~EtSAktg~---------~~V~e~F~~~~ 184 (232)
T cd04174 161 A----EVYLECSAFTSE---------KSIHSIFRSAS 184 (232)
T ss_pred C----CEEEEccCCcCC---------cCHHHHHHHHH
Confidence 3 268899999985 14666666654
No 326
>PTZ00194 60S ribosomal protein L26; Provisional
Probab=96.12 E-value=0.01 Score=50.33 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=32.1
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEE
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 482 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~ 482 (502)
.+..||.|.|+.|.++|-+|.|.+++..++++.|+
T Consensus 46 ~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~ViVE 80 (143)
T PTZ00194 46 PVRKDDEVMVVRGHHKGREGKVTAVYRKKWVIHIE 80 (143)
T ss_pred eeecCCEEEEecCCCCCCceEEEEEEcCCCEEEEe
Confidence 58999999999999999999999999988877764
No 327
>KOG0072|consensus
Probab=96.12 E-value=0.019 Score=48.61 Aligned_cols=88 Identities=20% Similarity=0.174 Sum_probs=51.8
Q ss_pred ccCCEEEEEEECCC----CCCcchHHHHHHH--HHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 6 AQMDGAILVCSAAD----GPMPQTREHILLA--RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 6 ~~~D~ailvVda~~----g~~~qt~e~l~~~--~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..|.+|.|||..+ |+..+ +...++ ..+.--.++|+.||+|.....- ..+....|.--.++...+.+
T Consensus 84 ~dt~avIyVVDssd~dris~a~~--el~~mL~E~eLq~a~llv~anKqD~~~~~t-----~~E~~~~L~l~~Lk~r~~~I 156 (182)
T KOG0072|consen 84 ADTDAVIYVVDSSDRDRISIAGV--ELYSMLQEEELQHAKLLVFANKQDYSGALT-----RSEVLKMLGLQKLKDRIWQI 156 (182)
T ss_pred cccceEEEEEeccchhhhhhhHH--HHHHHhccHhhcCceEEEEeccccchhhhh-----HHHHHHHhChHHHhhheeEE
Confidence 56899999999886 23222 222222 2233355777799999865411 11222222111122234789
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+..||.+|. +++..+++|.+-
T Consensus 157 v~tSA~kg~----------Gld~~~DWL~~~ 177 (182)
T KOG0072|consen 157 VKTSAVKGE----------GLDPAMDWLQRP 177 (182)
T ss_pred Eeecccccc----------CCcHHHHHHHHH
Confidence 999999987 778888887653
No 328
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.01 E-value=0.042 Score=59.01 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=62.4
Q ss_pred EEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCC-ccCcccceEEeC
Q psy15224 128 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTK-REDVERGQVLAK 206 (502)
Q Consensus 128 ~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~ 206 (502)
.+|+.+. +.++.++|.+|+|+.|..+. .+ ++....+|.||+.+++++++|.+|+-|++.+.+.. -.+++.||+|.+
T Consensus 473 ~vf~~~~-~~i~G~~V~~G~i~~~~~v~-r~-~~~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~ 549 (590)
T TIGR00491 473 LVFRQSK-PAIVGVEVLTGVIRQGYPLM-KD-DGETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYV 549 (590)
T ss_pred eeeeCCC-CeEEEEEEecCEEecCCeEE-ec-CCEEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEE
Confidence 6888765 79999999999999998863 32 22234789999999999999999999999998632 168999999975
Q ss_pred C
Q psy15224 207 P 207 (502)
Q Consensus 207 ~ 207 (502)
.
T Consensus 550 ~ 550 (590)
T TIGR00491 550 D 550 (590)
T ss_pred e
Confidence 4
No 329
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.84 E-value=0.022 Score=55.25 Aligned_cols=78 Identities=19% Similarity=0.131 Sum_probs=47.8
Q ss_pred EEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccccc
Q psy15224 10 GAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLAL 88 (502)
Q Consensus 10 ~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~g~ 88 (502)
.-+.+++..+|.. +...+= .......+++ +||+|++++ +...+... ..++.+. ...+++++||++|.
T Consensus 208 ~~v~vlsV~eg~d-kplKyp---~~f~~ADIVV-LNKiDLl~~~~~dle~~~----~~lr~ln---p~a~I~~vSA~tGe 275 (290)
T PRK10463 208 HKVAVLSVTEGED-KPLKYP---HMFAAASLML-LNKVDLLPYLNFDVEKCI----ACAREVN---PEIEIILISATSGE 275 (290)
T ss_pred eeEEEEECccccc-cchhcc---chhhcCcEEE-EEhHHcCcccHHHHHHHH----HHHHhhC---CCCcEEEEECCCCC
Confidence 4567778777743 122221 1223455666 999999874 22223232 2333332 24789999999987
Q ss_pred cCCCCCCCcccHHHHHHHHhh
Q psy15224 89 EGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 89 ~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
++++|+++|.+
T Consensus 276 ----------Gld~L~~~L~~ 286 (290)
T PRK10463 276 ----------GMDQWLNWLET 286 (290)
T ss_pred ----------CHHHHHHHHHH
Confidence 88999998865
No 330
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.82 E-value=0.06 Score=53.06 Aligned_cols=89 Identities=21% Similarity=0.213 Sum_probs=47.2
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCC--CCCCCeEEEcc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF--PGNDIPIIKGS 83 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~--~~~~~~ii~iS 83 (502)
..+|.++++.+...| ...+... -...+++.+++ +||+|+.+.+. .......+...+..+.- .....+++++|
T Consensus 146 ~~aD~i~vv~~~~~~---~el~~~~-~~l~~~~~ivv-~NK~Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~v~~iS 219 (300)
T TIGR00750 146 NMADTFVVVTIPGTG---DDLQGIK-AGLMEIADIYV-VNKADGEGATN-VTIARLMLALALEEIRRREDGWRPPVLTTS 219 (300)
T ss_pred HhhceEEEEecCCcc---HHHHHHH-HHHhhhccEEE-EEcccccchhH-HHHHHHHHHHHHhhccccccCCCCCEEEEE
Confidence 456777777554322 1111111 11346776665 99999987522 11111222111121111 11124799999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
|.+|. ++.+|++.+.++
T Consensus 220 A~~g~----------Gi~~L~~~i~~~ 236 (300)
T TIGR00750 220 AVEGR----------GIDELWDAIEEH 236 (300)
T ss_pred ccCCC----------CHHHHHHHHHHH
Confidence 99987 788888877664
No 331
>PRK04004 translation initiation factor IF-2; Validated
Probab=95.78 E-value=0.059 Score=58.04 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=60.7
Q ss_pred EEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCc-cCcccceEEeC
Q psy15224 128 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKR-EDVERGQVLAK 206 (502)
Q Consensus 128 ~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~ 206 (502)
.+|+.+. +.++.++|.+|+|+.|..|. .+ ++....+|.||+.++++++++.+|+-|++.+.+... .+++.||+|-.
T Consensus 475 ~vf~~~~-~~IaGc~V~~G~i~~~~~v~-r~-~g~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~~ 551 (586)
T PRK04004 475 YVFRQSD-PAIVGVEVLGGTIKPGVPLI-KE-DGKRVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILYV 551 (586)
T ss_pred eeEecCC-CeEEEEEEEeCEEecCCEEE-EE-CCEEEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 6888765 78999999999999999853 22 222347899999999999999999999999986321 57888888853
No 332
>KOG0076|consensus
Probab=95.71 E-value=0.016 Score=50.70 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=55.3
Q ss_pred cCCEEEEEEECCCC-CC----cchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcC-CCCCCCeEE
Q psy15224 7 QMDGAILVCSAADG-PM----PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE-FPGNDIPII 80 (502)
Q Consensus 7 ~~D~ailvVda~~g-~~----~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~-~~~~~~~ii 80 (502)
.|++++.+|||.+- -+ .+-+..+..=...|+|.++. +||-|+.+..+ .. ++...+.... ....+.++.
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~l-ankqd~q~~~~-~~----El~~~~~~~e~~~~rd~~~~ 165 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVL-ANKQDLQNAME-AA----ELDGVFGLAELIPRRDNPFQ 165 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhh-cchhhhhhhhh-HH----HHHHHhhhhhhcCCccCccc
Confidence 58899999999972 22 22222333334578997776 89999987521 12 3333332111 122367899
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
|+||++|. ++.+-.+++...++
T Consensus 166 pvSal~ge----------gv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 166 PVSALTGE----------GVKEGIEWLVKKLE 187 (197)
T ss_pred cchhhhcc----------cHHHHHHHHHHHHh
Confidence 99999997 66666666555443
No 333
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=95.67 E-value=0.12 Score=48.61 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=50.5
Q ss_pred cccCCEEEEEEECCCCCCcchHHHH-----HHHHH--hCCCeEEEEEEcCCCCChHHHHHH--------H-HHHHHHHHh
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHI-----LLARQ--VGVPYIVVFLNKADMVDDEELLEL--------V-EIEIRELLN 68 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l-----~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~--------i-~~~i~~~l~ 68 (502)
...+|++|||.|..+. ++.+.+ ..+.. .++|.++| .||+|+.+....... + .++...+.+
T Consensus 70 ~~~~d~illvfdis~~---~Sf~~i~~~w~~~~~~~~~~~piiLV-gnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak 145 (222)
T cd04173 70 YPDSDAVLICFDISRP---ETLDSVLKKWQGETQEFCPNAKVVLV-GCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAK 145 (222)
T ss_pred ccCCCEEEEEEECCCH---HHHHHHHHHHHHHHHhhCCCCCEEEE-EECcccccchhhhhhhhhccCCccCHHHHHHHHH
Confidence 4689999999998864 232222 11221 35675554 899999653111111 1 123334444
Q ss_pred hcCCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 69 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 69 ~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
.++. .+++-+||+++.+ ++.++++....
T Consensus 146 ~~~~----~~y~E~SAk~~~~---------~V~~~F~~~~~ 173 (222)
T cd04173 146 QVGA----VSYVECSSRSSER---------SVRDVFHVATV 173 (222)
T ss_pred HcCC----CEEEEcCCCcCCc---------CHHHHHHHHHH
Confidence 4442 4799999998761 36676665443
No 334
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=95.62 E-value=0.049 Score=53.20 Aligned_cols=87 Identities=24% Similarity=0.105 Sum_probs=49.0
Q ss_pred cCCEEEEEEECCCCCC---cchH-HHHHHHH-----HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15224 7 QMDGAILVCSAADGPM---PQTR-EHILLAR-----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 77 (502)
Q Consensus 7 ~~D~ailvVda~~g~~---~qt~-e~l~~~~-----~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 77 (502)
.|-+.+.|||.+.--. -++. .....+. ..+.|.+|+ .||||+...++.++...+.+.+.. +. .
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv-~NKiD~~~~~e~~~~~~~~l~~~~---~~----~ 308 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVV-LNKIDLPLDEEELEELKKALAEAL---GW----E 308 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEE-EeccCCCcCHHHHHHHHHHHHHhc---CC----C
Confidence 4778899999874321 1121 1222222 345676665 999996655454444433332222 22 2
Q ss_pred eEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 78 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 78 ~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+..++||.++. ++..|+..+.+.+
T Consensus 309 ~~~~ISa~t~~----------g~~~L~~~~~~~l 332 (369)
T COG0536 309 VFYLISALTRE----------GLDELLRALAELL 332 (369)
T ss_pred cceeeehhccc----------CHHHHHHHHHHHH
Confidence 23349999987 7777777665544
No 335
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.60 E-value=0.056 Score=51.94 Aligned_cols=91 Identities=22% Similarity=0.174 Sum_probs=53.5
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcccc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 85 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~ 85 (502)
..||..++|.-+..|-.-|... +--+.+--++| |||+|+.+.+..+.++...+...-....-+...-|++-.||.
T Consensus 163 ~~aDt~~~v~~pg~GD~~Q~iK----~GimEiaDi~v-INKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~ 237 (323)
T COG1703 163 NMADTFLVVMIPGAGDDLQGIK----AGIMEIADIIV-INKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSAL 237 (323)
T ss_pred hhcceEEEEecCCCCcHHHHHH----hhhhhhhheee-EeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeec
Confidence 4578888888766665444432 22233444666 999997665333333333222221111112235689999999
Q ss_pred ccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 86 LALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 86 ~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+|. ++.+|++++.++.
T Consensus 238 ~g~----------Gi~~L~~ai~~h~ 253 (323)
T COG1703 238 EGE----------GIDELWDAIEDHR 253 (323)
T ss_pred cCC----------CHHHHHHHHHHHH
Confidence 987 8888888887664
No 336
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.021 Score=60.62 Aligned_cols=81 Identities=17% Similarity=0.253 Sum_probs=55.9
Q ss_pred cCCEEEEEEECCCCCCcchHHHH---HHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 7 QMDGAILVCSAADGPMPQTREHI---LLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l---~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
..|+++-||||.. .++++ .++..+|+|. |+++|++|....+ ..+--.++++ +.+| +|++|+|
T Consensus 81 ~~D~ivnVvDAtn-----LeRnLyltlQLlE~g~p~-ilaLNm~D~A~~~-Gi~ID~~~L~---~~LG-----vPVv~tv 145 (653)
T COG0370 81 KPDLIVNVVDATN-----LERNLYLTLQLLELGIPM-ILALNMIDEAKKR-GIRIDIEKLS---KLLG-----VPVVPTV 145 (653)
T ss_pred CCCEEEEEcccch-----HHHHHHHHHHHHHcCCCe-EEEeccHhhHHhc-CCcccHHHHH---HHhC-----CCEEEEE
Confidence 5799999999974 44444 4467799995 5569999986531 1111112333 3334 6899999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
|.+|. ++++|++.+.+..+
T Consensus 146 A~~g~----------G~~~l~~~i~~~~~ 164 (653)
T COG0370 146 AKRGE----------GLEELKRAIIELAE 164 (653)
T ss_pred eecCC----------CHHHHHHHHHHhcc
Confidence 99987 89999999876543
No 337
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.55 E-value=0.022 Score=53.83 Aligned_cols=85 Identities=27% Similarity=0.241 Sum_probs=52.2
Q ss_pred cccCCEEEEEEECCCCCCcchHH--HHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCC--CCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQTRE--HILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP--GNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e--~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~--~~~~~ii 80 (502)
+..||..++|+.+..|-.-|... .+++ .-++| |||.|+... +....++...+....-. ....|++
T Consensus 140 ~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~v-VNKaD~~gA----~~~~~~l~~~l~l~~~~~~~W~ppV~ 208 (266)
T PF03308_consen 140 ADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFV-VNKADRPGA----DRTVRDLRSMLHLLREREDGWRPPVL 208 (266)
T ss_dssp HTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEE-EE--SHHHH----HHHHHHHHHHHHHCSTSCTSB--EEE
T ss_pred HHhcCeEEEEecCCCccHHHHHhhhhhhh------ccEEE-EeCCChHHH----HHHHHHHHHHHhhccccccCCCCCEE
Confidence 35699999999988876666532 2232 34666 999995443 23334455555432211 1246899
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
.+||.+|. ++.+|.+.|.++
T Consensus 209 ~tsA~~~~----------Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 209 KTSALEGE----------GIDELWEAIDEH 228 (266)
T ss_dssp EEBTTTTB----------SHHHHHHHHHHH
T ss_pred EEEeCCCC----------CHHHHHHHHHHH
Confidence 99999887 889999888764
No 338
>PRK14845 translation initiation factor IF-2; Provisional
Probab=95.46 E-value=0.34 Score=55.27 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=61.7
Q ss_pred EEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCC-ccCcccceEEeC
Q psy15224 128 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTK-REDVERGQVLAK 206 (502)
Q Consensus 128 ~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~ 206 (502)
.+|+.+. +.++.++|.+|+|+.|..+.- + ++....+|.||+.+++++++|.+|+-|++.+.+.. -.++..||+|..
T Consensus 931 ~vF~~~~-~~IaG~~V~~G~i~~~~~l~r-~-~~~~iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~~~gr~~~~gD~l~~ 1007 (1049)
T PRK14845 931 CIFRRSN-PAIVGVEVLEGTLRVGVTLIK-E-DGMKVGTVRSIKDRGENVKEAKAGKAVAIAIEGAILGRHVDEGETLYV 1007 (1049)
T ss_pred eEEeCCC-CeEEEEEEeeCEEecCcEEEe-c-CCEEEEEEchHhccCccccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 7888776 799999999999999977632 2 22234789999999999999999999999998632 257888988865
Q ss_pred C
Q psy15224 207 P 207 (502)
Q Consensus 207 ~ 207 (502)
.
T Consensus 1008 ~ 1008 (1049)
T PRK14845 1008 D 1008 (1049)
T ss_pred e
Confidence 3
No 339
>KOG0094|consensus
Probab=95.16 E-value=0.24 Score=44.47 Aligned_cols=92 Identities=21% Similarity=0.246 Sum_probs=62.3
Q ss_pred cccCCEEEEEEECCC-CCCcchHHHHHHHHH-hCC--CeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAAD-GPMPQTREHILLARQ-VGV--PYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~-g~~~qt~e~l~~~~~-~~i--~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+++||+|-|.++ +-+.+|...|+-++. .|- ..|++|=||.||.+..+. .. ++=....+.++ +.++
T Consensus 92 ~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv-s~--eEg~~kAkel~-----a~f~ 163 (221)
T KOG0094|consen 92 IRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV-SI--EEGERKAKELN-----AEFI 163 (221)
T ss_pred ccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhh-hH--HHHHHHHHHhC-----cEEE
Confidence 457899999999885 556777777765554 443 234455799999986222 11 11123334333 4688
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCCCC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 114 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~ 114 (502)
-.||+.|. ++.+|+..|...+|..
T Consensus 164 etsak~g~----------NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 164 ETSAKAGE----------NVKQLFRRIAAALPGM 187 (221)
T ss_pred EecccCCC----------CHHHHHHHHHHhccCc
Confidence 99999998 8889999888877754
No 340
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=95.14 E-value=0.098 Score=50.88 Aligned_cols=70 Identities=21% Similarity=0.221 Sum_probs=50.4
Q ss_pred cCCEEEEEEECC-CCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 7 QMDGAILVCSAA-DGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 7 ~~D~ailvVda~-~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
.+|++++++++. .++.+.+.+.+..+.. +++.++ |+||+|+... +.....+..+.+.++..+ +++++.+.
T Consensus 114 rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~-VinK~D~l~~-~e~~~~k~~i~~~l~~~~-----i~~~~~~~ 184 (276)
T cd01850 114 RVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIP-VIAKADTLTP-EELKEFKQRIMEDIEEHN-----IKIYKFPE 184 (276)
T ss_pred ceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEE-EEECCCcCCH-HHHHHHHHHHHHHHHHcC-----CceECCCC
Confidence 578999999987 4788888888888875 788655 5999999875 333455666777776554 34555443
No 341
>KOG1191|consensus
Probab=95.14 E-value=0.022 Score=57.99 Aligned_cols=92 Identities=21% Similarity=0.190 Sum_probs=57.3
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCC-----------eEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVP-----------YIVVFLNKADMVDD-EELLELVEIEIRELLNKYE 71 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~-----------~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~ 71 (502)
.+..||+++|||||.++.+.++......+...+.. .+|+++||.|+... .+.....+ .+....+
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~----~~~~~~~ 420 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPV----VYPSAEG 420 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCce----ecccccc
Confidence 46789999999999999999998888888776643 34445777777653 11111111 1111111
Q ss_pred CCCCCCeEEE-ccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 72 FPGNDIPIIK-GSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 72 ~~~~~~~ii~-iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
- ...+++. +|+.++. ++.+|.+++.+.+
T Consensus 421 ~--~~~~i~~~vs~~tke----------g~~~L~~all~~~ 449 (531)
T KOG1191|consen 421 R--SVFPIVVEVSCTTKE----------GCERLSTALLNIV 449 (531)
T ss_pred C--cccceEEEeeechhh----------hHHHHHHHHHHHH
Confidence 1 1334444 8888876 7888887776543
No 342
>KOG0070|consensus
Probab=95.12 E-value=0.055 Score=48.05 Aligned_cols=90 Identities=19% Similarity=0.226 Sum_probs=55.6
Q ss_pred ccCCEEEEEEECCCCC-CcchHH-HHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 6 AQMDGAILVCSAADGP-MPQTRE-HILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 6 ~~~D~ailvVda~~g~-~~qt~e-~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...+++|+|||+++-. .+..++ ...++.. .+.|.++ ..||.|+.+.-. ..++.+.|.-..+......+-
T Consensus 83 ~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv-~aNKqD~~~als-----~~ei~~~L~l~~l~~~~w~iq 156 (181)
T KOG0070|consen 83 QNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLV-FANKQDLPGALS-----AAEITNKLGLHSLRSRNWHIQ 156 (181)
T ss_pred cCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEE-EechhhccccCC-----HHHHHhHhhhhccCCCCcEEe
Confidence 4679999999998621 111222 1122221 3556544 489999987511 124555555445555567788
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
..+|.+|. ++.+-++.+.+.+
T Consensus 157 ~~~a~~G~----------GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 157 STCAISGE----------GLYEGLDWLSNNL 177 (181)
T ss_pred eccccccc----------cHHHHHHHHHHHH
Confidence 89999987 8888888876644
No 343
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]
Probab=95.02 E-value=0.04 Score=44.30 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=26.5
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCC
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEK 476 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~ 476 (502)
.+..||.|.|++|.++|-+|.|.++++..
T Consensus 4 ~IrkGD~V~Vi~GkdKGk~GkVl~v~~k~ 32 (104)
T COG0198 4 KVKKGDTVKVIAGKDKGKEGKVLKVLPKK 32 (104)
T ss_pred ceecCCEEEEEecCCCCcceEEEEEecCe
Confidence 47899999999999999999999999754
No 344
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.98 E-value=0.15 Score=48.43 Aligned_cols=87 Identities=22% Similarity=0.264 Sum_probs=45.9
Q ss_pred CEEEEEEECCCCCCcchH-----HHHHHHHHhCCCeEEEEEEcCCCCCh--HHH-----------------HHHHHHHHH
Q psy15224 9 DGAILVCSAADGPMPQTR-----EHILLARQVGVPYIVVFLNKADMVDD--EEL-----------------LELVEIEIR 64 (502)
Q Consensus 9 D~ailvVda~~g~~~qt~-----e~l~~~~~~~i~~iiv~iNK~D~~~~--~~~-----------------~~~i~~~i~ 64 (502)
=++++++|+..--.+.+- ..+.....+++|++.+ +||+|+.+. +.. +....+++.
T Consensus 124 ~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnv-lsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~ 202 (238)
T PF03029_consen 124 LVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNV-LSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIA 202 (238)
T ss_dssp -EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEE-E--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHH
T ss_pred eEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEe-eeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 368889998753332221 1122234589998877 999999872 111 122223333
Q ss_pred HHHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 65 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 65 ~~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
.++..++. ..+++|+|+.++. ++.+|+..+.+
T Consensus 203 ~~l~~~~~---~~~f~pls~~~~~----------~~~~L~~~id~ 234 (238)
T PF03029_consen 203 ELLDDFGL---VIRFIPLSSKDGE----------GMEELLAAIDK 234 (238)
T ss_dssp HHCCCCSS---S---EE-BTTTTT----------THHHHHHHHHH
T ss_pred HHHhhcCC---CceEEEEECCChH----------HHHHHHHHHHH
Confidence 44443333 1279999999887 88999988875
No 345
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function. Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.
Probab=94.87 E-value=0.28 Score=33.44 Aligned_cols=50 Identities=16% Similarity=0.247 Sum_probs=39.4
Q ss_pred cCCCCeEEEe--cCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceE
Q psy15224 449 YQLDELVRIK--DGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVE 500 (502)
Q Consensus 449 ~~~G~~V~I~--~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~ 500 (502)
+-+|..|+|+ +-++-||+|.|.++. .+++.|+++--+=...|++..+++|
T Consensus 2 ilPG~~V~V~n~~~~Y~~y~G~VQRvs--dgkaaVLFEGGnWdKlvTf~l~eLe 53 (53)
T PF11623_consen 2 ILPGSTVRVKNPNDIYYGYEGFVQRVS--DGKAAVLFEGGNWDKLVTFRLSELE 53 (53)
T ss_dssp --TT-EEEE--TTSTTTT-EEEEEEEE--TTEEEEEEEETTEEEEEEEEGGGEE
T ss_pred ccCCCEEEEeCCCCccchheEEEEEee--CCeEEEEecCCCceEEEEEEhhhCC
Confidence 3589999998 567999999999998 5589999999777888999998875
No 346
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=94.66 E-value=0.076 Score=44.08 Aligned_cols=85 Identities=21% Similarity=0.153 Sum_probs=57.3
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
++-+..+|+.++|-.|+++...-.- .++.-...| .|-+|+|.|+... ...+ ....+|.+.|- -+++.
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~p---~f~~~~~k~-vIgvVTK~DLaed-~dI~----~~~~~L~eaGa----~~IF~ 125 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFPP---GFLDIGVKK-VIGVVTKADLAED-ADIS----LVKRWLREAGA----EPIFE 125 (148)
T ss_pred HHHhhccceeeeeecccCccccCCc---ccccccccc-eEEEEecccccch-HhHH----HHHHHHHHcCC----cceEE
Confidence 3456789999999999987543322 223333445 5555999999864 2222 34556666663 47999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+|+.+.. ++.+|++.|..
T Consensus 126 ~s~~d~~----------gv~~l~~~L~~ 143 (148)
T COG4917 126 TSAVDNQ----------GVEELVDYLAS 143 (148)
T ss_pred EeccCcc----------cHHHHHHHHHh
Confidence 9998765 89999988865
No 347
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=94.58 E-value=0.36 Score=47.01 Aligned_cols=49 Identities=22% Similarity=0.217 Sum_probs=32.6
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 37 VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 37 i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+|.+. ++||+|+... +. +..+.+. ...+++||..++ ++++|.+.|-+.+
T Consensus 240 ~p~l~-v~NKiD~~~~-e~-------~~~l~~~-------~~~v~isa~~~~----------nld~L~e~i~~~L 288 (365)
T COG1163 240 KPALY-VVNKIDLPGL-EE-------LERLARK-------PNSVPISAKKGI----------NLDELKERIWDVL 288 (365)
T ss_pred eeeEE-EEecccccCH-HH-------HHHHHhc-------cceEEEecccCC----------CHHHHHHHHHHhh
Confidence 35444 4999999885 22 2222221 258899999987 7888888876654
No 348
>KOG0075|consensus
Probab=94.55 E-value=0.16 Score=43.33 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=55.0
Q ss_pred ccCCEEEEEEECCCC-CCcchHH----HHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCC---CCCCC
Q psy15224 6 AQMDGAILVCSAADG-PMPQTRE----HILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF---PGNDI 77 (502)
Q Consensus 6 ~~~D~ailvVda~~g-~~~qt~e----~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~---~~~~~ 77 (502)
..+|+.+.+|||.+. --+..++ .|..-...|+|.+++ -||.|+.+.=.. .++..++|+ ....+
T Consensus 87 R~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVL-GnK~d~~~AL~~--------~~li~rmgL~sitdREv 157 (186)
T KOG0075|consen 87 RGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVL-GNKIDLPGALSK--------IALIERMGLSSITDREV 157 (186)
T ss_pred hcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEe-cccccCcccccH--------HHHHHHhCccccccceE
Confidence 358999999999872 1122332 233334578997777 899999875110 112223333 23356
Q ss_pred eEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 78 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 78 ~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
-.+.+|++... +++..++.|.++.
T Consensus 158 cC~siScke~~----------Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 158 CCFSISCKEKV----------NIDITLDWLIEHS 181 (186)
T ss_pred EEEEEEEcCCc----------cHHHHHHHHHHHh
Confidence 67789998876 7888889887653
No 349
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=94.47 E-value=0.11 Score=49.34 Aligned_cols=45 Identities=18% Similarity=0.070 Sum_probs=37.8
Q ss_pred cCCEEEEEEECCCCCCcch-HHHHHHHHHhCCCeEEEEEEcCCCCCh
Q psy15224 7 QMDGAILVCSAADGPMPQT-REHILLARQVGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt-~e~l~~~~~~~i~~iiv~iNK~D~~~~ 52 (502)
..+++++|+||+.++..++ .+.++.+...+.+.++| +||+|+.+.
T Consensus 162 ~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~V-iTK~D~~~~ 207 (240)
T smart00053 162 EECLILAVTPANVDLANSDALKLAKEVDPQGERTIGV-ITKLDLMDE 207 (240)
T ss_pred ccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEE-EECCCCCCc
Confidence 3569999999999999888 57778888888886666 999999875
No 350
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=94.45 E-value=0.23 Score=50.24 Aligned_cols=87 Identities=20% Similarity=0.322 Sum_probs=55.4
Q ss_pred cCCEEEEEE-ECC------CCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 7 QMDGAILVC-SAA------DGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 7 ~~D~ailvV-da~------~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.+|++|+|. |++ ++......+.+..++..++|.+++ +||.|-...+. ....+++ -.. | .+|+
T Consensus 144 hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiiv-lN~~dp~~~et--~~l~~~l---~ek--y---~vpv 212 (492)
T TIGR02836 144 HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIIL-LNSTHPYHPET--EALRQEL---EEK--Y---DVPV 212 (492)
T ss_pred cCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEE-EECcCCCCchh--HHHHHHH---HHH--h---CCce
Confidence 689999999 875 456677788899999999997666 99999433211 1111222 122 2 2688
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+++|+..-. .+.+..+|+.+.-.+|
T Consensus 213 l~v~c~~l~--------~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 213 LAMDVESMR--------ESDILSVLEEVLYEFP 237 (492)
T ss_pred EEEEHHHcC--------HHHHHHHHHHHHhcCC
Confidence 999987543 1245555555544344
No 351
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=94.32 E-value=0.096 Score=48.06 Aligned_cols=93 Identities=15% Similarity=0.214 Sum_probs=60.8
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHh-C---CCeEEEEEEcCCCCCh---HHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQV-G---VPYIVVFLNKADMVDD---EELLELVEIEIRELLNKYEFPGNDI 77 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~-~---i~~iiv~iNK~D~~~~---~~~~~~i~~~i~~~l~~~~~~~~~~ 77 (502)
...+|++++|+|+.. ++..+++.+..++.. | .++.++++|+.|.... ++........++.+++.++-
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~----- 154 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG----- 154 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC-----
Confidence 456899999999988 888888888777653 4 2456666999998764 23333333556667766543
Q ss_pred eEEEcc-----ccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 78 PIIKGS-----AKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 78 ~ii~iS-----a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
.++..+ +..+ ..+.+|++.+.+.++.
T Consensus 155 r~~~f~~~~~~~~~~----------~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 155 RYVAFNNKAKGEEQE----------QQVKELLAKVESMVKE 185 (196)
T ss_pred eEEEEeCCCCcchhH----------HHHHHHHHHHHHHHHh
Confidence 122333 2233 2788999998886653
No 352
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.30 E-value=0.13 Score=36.54 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=20.0
Q ss_pred cCCEEEEEEECCC--CCCcchHHHH-HHHHH-h-CCCeEEEEEEcCC
Q psy15224 7 QMDGAILVCSAAD--GPMPQTREHI-LLARQ-V-GVPYIVVFLNKAD 48 (502)
Q Consensus 7 ~~D~ailvVda~~--g~~~qt~e~l-~~~~~-~-~i~~iiv~iNK~D 48 (502)
..+.+++++|.++ |..-....+| ..++. . +.|.++| +||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V-~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVV-LNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEE-E--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEE-EeccC
Confidence 3688999999986 4332222222 33443 3 6775554 99998
No 353
>KOG0073|consensus
Probab=94.06 E-value=0.25 Score=43.06 Aligned_cols=76 Identities=25% Similarity=0.369 Sum_probs=47.1
Q ss_pred ccCCEEEEEEECCCCC-CcchHHHHHHH----HHhCCCeEEEEEEcCCCCCh--HHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 6 AQMDGAILVCSAADGP-MPQTREHILLA----RQVGVPYIVVFLNKADMVDD--EELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 6 ~~~D~ailvVda~~g~-~~qt~e~l~~~----~~~~i~~iiv~iNK~D~~~~--~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
..+|+.|.|+|..+-. +.++..++.-+ +..|.+.+|+ .||.|+... .+....+ ..+..++ +...++
T Consensus 82 estdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvl-ank~dl~~~l~~~~i~~~-~~L~~l~-----ks~~~~ 154 (185)
T KOG0073|consen 82 ESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVL-ANKQDLPGALSLEEISKA-LDLEELA-----KSHHWR 154 (185)
T ss_pred hccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEE-EecCcCccccCHHHHHHh-hCHHHhc-----cccCce
Confidence 4689999999997632 24444444333 3467786666 899999853 1111111 1233333 334689
Q ss_pred EEEccccccc
Q psy15224 79 IIKGSAKLAL 88 (502)
Q Consensus 79 ii~iSa~~g~ 88 (502)
++-+||.+|.
T Consensus 155 l~~cs~~tge 164 (185)
T KOG0073|consen 155 LVKCSAVTGE 164 (185)
T ss_pred EEEEeccccc
Confidence 9999999986
No 354
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.63 E-value=0.2 Score=47.57 Aligned_cols=62 Identities=24% Similarity=0.329 Sum_probs=47.9
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCC
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 72 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 72 (502)
+++++..||+||+|...+.--....++.+++++.+|+|..|| +||-|.-+. ++.++....+.
T Consensus 179 Vi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iV-iNr~~~g~s---------~ie~~~~e~gi 240 (284)
T COG1149 179 VIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIV-INRYNLGDS---------EIEEYCEEEGI 240 (284)
T ss_pred HHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEE-EecCCCCch---------HHHHHHHHcCC
Confidence 467889999999999887644466788999999999999888 999966543 35556655554
No 355
>COG3596 Predicted GTPase [General function prediction only]
Probab=93.55 E-value=0.54 Score=44.81 Aligned_cols=93 Identities=17% Similarity=0.281 Sum_probs=61.7
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCC-CeEEEEEEcCCCCCh---------------HHHHHHHHHHHHHHHh
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGV-PYIVVFLNKADMVDD---------------EELLELVEIEIRELLN 68 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i-~~iiv~iNK~D~~~~---------------~~~~~~i~~~i~~~l~ 68 (502)
+...|++++++|+.+-....+.+.+.-+...+. ...+++||-.|+..+ ++..++-.+.+.+++.
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q 194 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQ 194 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 345799999999988666666666666665555 567777999997431 1222333333333333
Q ss_pred hcCCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 69 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 69 ~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
. -.|++..|+..+ | ++..|+.++...+|.
T Consensus 195 ~------V~pV~~~~~r~~------w----gl~~l~~ali~~lp~ 223 (296)
T COG3596 195 E------VKPVVAVSGRLP------W----GLKELVRALITALPV 223 (296)
T ss_pred h------cCCeEEeccccC------c----cHHHHHHHHHHhCcc
Confidence 2 357888885544 4 899999999998874
No 356
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=93.52 E-value=1.1 Score=42.18 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=48.2
Q ss_pred ccCCEEEEEEECCCCCCcchH----HHHHHHHH--hCCCeEEEEEEcCCCCCh---HHHHHHHHHHHHHHHhhcCCCCCC
Q psy15224 6 AQMDGAILVCSAADGPMPQTR----EHILLARQ--VGVPYIVVFLNKADMVDD---EELLELVEIEIRELLNKYEFPGND 76 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~----e~l~~~~~--~~i~~iiv~iNK~D~~~~---~~~~~~i~~~i~~~l~~~~~~~~~ 76 (502)
+.+++.|.|+|+...-...+. ..+..+.. -+++..++ +.|||+... ++.++.+.+.+.+.+...+.. .
T Consensus 75 ~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vf-iHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~--~ 151 (232)
T PF04670_consen 75 SNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVF-IHKMDLLSEDEREEIFRDIQQRIRDELEDLGIE--D 151 (232)
T ss_dssp CTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEE-EE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-T--S
T ss_pred hccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEE-EeecccCCHHHHHHHHHHHHHHHHHHhhhcccc--c
Confidence 578899999999843332222 23333443 34555555 999999875 356677777888888776653 4
Q ss_pred CeEEEccccc
Q psy15224 77 IPIIKGSAKL 86 (502)
Q Consensus 77 ~~ii~iSa~~ 86 (502)
+.+...|.++
T Consensus 152 ~~~~~TSI~D 161 (232)
T PF04670_consen 152 ITFFLTSIWD 161 (232)
T ss_dssp EEEEEE-TTS
T ss_pred eEEEeccCcC
Confidence 6788888865
No 357
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=93.42 E-value=0.23 Score=45.86 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=29.5
Q ss_pred cccC-CEEEEEEECCCCC--CcchHHHHHHH-H---H--hCCCeEEEEEEcCCCCCh
Q psy15224 5 AAQM-DGAILVCSAADGP--MPQTREHILLA-R---Q--VGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 5 ~~~~-D~ailvVda~~g~--~~qt~e~l~~~-~---~--~~i~~iiv~iNK~D~~~~ 52 (502)
+..+ +++|+|+|+.... ...+.+++..+ . . .++|.+++ .||+|+...
T Consensus 69 ~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv-~NK~Dl~~a 124 (203)
T cd04105 69 LKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIA-CNKQDLFTA 124 (203)
T ss_pred HhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEE-ecchhhccc
Confidence 3455 9999999998753 12233443222 1 1 37785554 999998764
No 358
>KOG2486|consensus
Probab=93.36 E-value=0.041 Score=52.10 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=51.4
Q ss_pred EEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcC---CCCCCCeEEEccccc
Q psy15224 11 AILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYE---FPGNDIPIIKGSAKL 86 (502)
Q Consensus 11 ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~---~~~~~~~ii~iSa~~ 86 (502)
+.|++||..++.+.+...+..|-..++|.-+| .||||.... ...-......+...+..+. |. ...|++.+|+.+
T Consensus 223 ~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~v-fTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~-~~~Pw~~~Ssvt 300 (320)
T KOG2486|consen 223 VFLLVDASVPIQPTDNPEIAWLGENNVPMTSV-FTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFL-VDLPWIYVSSVT 300 (320)
T ss_pred eeeeeeccCCCCCCChHHHHHHhhcCCCeEEe-eehhhhhhhccccccCccccceeehhhcccccee-ccCCceeeeccc
Confidence 67899999999999999999999999998777 999998543 1001111112222222211 21 246788899988
Q ss_pred cc
Q psy15224 87 AL 88 (502)
Q Consensus 87 g~ 88 (502)
+.
T Consensus 301 ~~ 302 (320)
T KOG2486|consen 301 SL 302 (320)
T ss_pred cc
Confidence 77
No 359
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=93.30 E-value=0.33 Score=45.12 Aligned_cols=84 Identities=14% Similarity=0.014 Sum_probs=48.2
Q ss_pred ccCCEEEEEEECCCCCCcchHHH-HHHHH--HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREH-ILLAR--QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~-l~~~~--~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
..+|++++|.|.++..+-++... +..+. ..++|.++ +.||+|+.+.+.. . +...+.+.. ...++.+
T Consensus 80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~l-v~nK~Dl~~~~~~-~----~~~~~~~~~-----~~~~~e~ 148 (215)
T PTZ00132 80 IKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVL-VGNKVDVKDRQVK-A----RQITFHRKK-----NLQYYDI 148 (215)
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEE-EEECccCccccCC-H----HHHHHHHHc-----CCEEEEE
Confidence 46899999999987544333221 11111 13567544 4999998653111 1 112233322 2468899
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
||++|. ++.+.+..|.+.
T Consensus 149 Sa~~~~----------~v~~~f~~ia~~ 166 (215)
T PTZ00132 149 SAKSNY----------NFEKPFLWLARR 166 (215)
T ss_pred eCCCCC----------CHHHHHHHHHHH
Confidence 999987 666666555443
No 360
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=93.21 E-value=0.25 Score=43.33 Aligned_cols=87 Identities=21% Similarity=0.218 Sum_probs=52.3
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH-hC-CCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ-VG-VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~-~~-i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
...+|++|+|.|.+..-. ......+..+.. .. -+.++++.||.|+.+.... ..++...+.+..+ .+++.
T Consensus 69 ~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v---~~~~~~~~~~~~~-----~~~~e 140 (162)
T PF00071_consen 69 YRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREV---SVEEAQEFAKELG-----VPYFE 140 (162)
T ss_dssp HTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSS---CHHHHHHHHHHTT-----SEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccceeeeccccccccccc---hhhHHHHHHHHhC-----CEEEE
Confidence 457899999999876321 111223333332 22 1346666899998763111 0123455555543 57999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+|++++. ++.+++..+.+
T Consensus 141 ~Sa~~~~----------~v~~~f~~~i~ 158 (162)
T PF00071_consen 141 VSAKNGE----------NVKEIFQELIR 158 (162)
T ss_dssp EBTTTTT----------THHHHHHHHHH
T ss_pred EECCCCC----------CHHHHHHHHHH
Confidence 9999887 78887776654
No 361
>KOG1424|consensus
Probab=92.77 E-value=0.3 Score=50.27 Aligned_cols=69 Identities=22% Similarity=0.281 Sum_probs=43.5
Q ss_pred ccCCEEEEEEECCCCCC---cchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 6 AQMDGAILVCSAADGPM---PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~---~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
..+|++|.+|||..-.. +-...+..-. ..-++.++++||.||...+.+ ..-..+|.. +++++++-
T Consensus 173 ErSDivvqIVDARnPllfr~~dLe~Yvke~--d~~K~~~LLvNKaDLl~~~qr-----~aWa~YF~~-----~ni~~vf~ 240 (562)
T KOG1424|consen 173 ERSDIVVQIVDARNPLLFRSPDLEDYVKEV--DPSKANVLLVNKADLLPPEQR-----VAWAEYFRQ-----NNIPVVFF 240 (562)
T ss_pred hhcceEEEEeecCCccccCChhHHHHHhcc--ccccceEEEEehhhcCCHHHH-----HHHHHHHHh-----cCceEEEE
Confidence 46899999999998654 3233332222 222445555999999986322 233445532 35889999
Q ss_pred cccc
Q psy15224 83 SAKL 86 (502)
Q Consensus 83 Sa~~ 86 (502)
||..
T Consensus 241 SA~~ 244 (562)
T KOG1424|consen 241 SALA 244 (562)
T ss_pred eccc
Confidence 9976
No 362
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=92.42 E-value=0.44 Score=47.24 Aligned_cols=56 Identities=32% Similarity=0.460 Sum_probs=36.9
Q ss_pred CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHHHHH-HHhhcCCC
Q psy15224 36 GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSK-ALDTYIPT 113 (502)
Q Consensus 36 ~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~-~l~~~~p~ 113 (502)
..|.++ ++||+|+.+.++..+ ++. .... ..+++|+||+.+. ++.+|.+ .+.+++|.
T Consensus 214 ~KPvI~-VlNK~Dl~~~~~~~~----~l~---~~~~----~~~iI~iSA~~e~----------~L~~L~~~~i~~~lPe 270 (318)
T cd01899 214 SKPMVI-AANKADIPDAENNIS----KLR---LKYP----DEIVVPTSAEAEL----------ALRRAAKQGLIKYDPG 270 (318)
T ss_pred CCcEEE-EEEHHHccChHHHHH----HHH---hhCC----CCeEEEEeCcccc----------cHHHHHHhhHHHhCCC
Confidence 456554 599999875422221 222 1111 3579999999987 8889997 58888875
No 363
>KOG2484|consensus
Probab=92.25 E-value=0.36 Score=48.19 Aligned_cols=60 Identities=23% Similarity=0.170 Sum_probs=39.2
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHH-HHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhh
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLA-RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 69 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~-~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~ 69 (502)
+..+|++|=|+||.+....-..+.=... .+.|-+++|+++||+|++.. + ..++...+|+.
T Consensus 144 ve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPr-E----v~e~Wl~YLr~ 204 (435)
T KOG2484|consen 144 VEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPR-E----VVEKWLVYLRR 204 (435)
T ss_pred HhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCH-H----HHHHHHHHHHh
Confidence 3568999999999986653333222222 34565778888999999986 3 22345556654
No 364
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.70 E-value=0.21 Score=41.27 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=26.5
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEc
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNK 46 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK 46 (502)
+..+|++++|+|+.+....+..+.+..++ .+.| +++|+||
T Consensus 77 ~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPITEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 35788899999987744445556666665 5555 4555888
No 365
>KOG0078|consensus
Probab=91.57 E-value=0.56 Score=42.75 Aligned_cols=72 Identities=22% Similarity=0.245 Sum_probs=46.2
Q ss_pred ccCCEEEEEEECCCCCCcchHHHH----HHH---HHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHI----LLA---RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l----~~~---~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
..|+.++||.|.... ++-+++ ..+ ...+++.++| =||+|+.+.... -.++-+++...+|. +
T Consensus 83 rgA~gi~LvyDitne---~Sfeni~~W~~~I~e~a~~~v~~~Lv-GNK~D~~~~R~V---~~e~ge~lA~e~G~-----~ 150 (207)
T KOG0078|consen 83 RGAMGILLVYDITNE---KSFENIRNWIKNIDEHASDDVVKILV-GNKCDLEEKRQV---SKERGEALAREYGI-----K 150 (207)
T ss_pred hhcCeeEEEEEccch---HHHHHHHHHHHHHHhhCCCCCcEEEe-eccccccccccc---cHHHHHHHHHHhCC-----e
Confidence 468999999998763 333332 222 2247887766 899999773111 11234455666554 6
Q ss_pred EEEcccccccc
Q psy15224 79 IIKGSAKLALE 89 (502)
Q Consensus 79 ii~iSa~~g~~ 89 (502)
|+.+||++|.|
T Consensus 151 F~EtSAk~~~N 161 (207)
T KOG0078|consen 151 FFETSAKTNFN 161 (207)
T ss_pred EEEccccCCCC
Confidence 99999999983
No 366
>KOG1532|consensus
Probab=91.04 E-value=1.9 Score=41.13 Aligned_cols=89 Identities=19% Similarity=0.270 Sum_probs=50.9
Q ss_pred CEEEEEEECCCCCCcchH--HHH---HHHHHhCCCeEEEEEEcCCCCChH---------HHHHHHHHHH-HHHH----hh
Q psy15224 9 DGAILVCSAADGPMPQTR--EHI---LLARQVGVPYIVVFLNKADMVDDE---------ELLELVEIEI-RELL----NK 69 (502)
Q Consensus 9 D~ailvVda~~g~~~qt~--e~l---~~~~~~~i~~iiv~iNK~D~~~~~---------~~~~~i~~~i-~~~l----~~ 69 (502)
-+++.+||....-.+.|- ..+ .++....+|.|++ .||.|..+.+ +.|++..++. ..++ ..
T Consensus 149 tvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivv-fNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~S 227 (366)
T KOG1532|consen 149 TVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVV-FNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRS 227 (366)
T ss_pred eEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEE-EecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhh
Confidence 466778887765555442 233 3455678896555 9999998741 2222222210 0011 11
Q ss_pred cC------CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 70 YE------FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 70 ~~------~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+. + .....+.+|+.+|. |..+++.++...
T Consensus 228 mSL~leeFY--~~lrtv~VSs~tG~----------G~ddf~~av~~~ 262 (366)
T KOG1532|consen 228 MSLMLEEFY--RSLRTVGVSSVTGE----------GFDDFFTAVDES 262 (366)
T ss_pred HHHHHHHHH--hhCceEEEecccCC----------cHHHHHHHHHHH
Confidence 00 2 24568899999987 777777776543
No 367
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=91.03 E-value=0.27 Score=44.43 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=48.6
Q ss_pred CC-EEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeEEEcccc
Q psy15224 8 MD-GAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 85 (502)
Q Consensus 8 ~D-~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~ 85 (502)
.| .-|.|||..+|..---+-+=.+-+ .-++| |||.|+..+ ....+ ....-.++.. .+.||+.+|++
T Consensus 117 ~d~~~v~VidvteGe~~P~K~gP~i~~----aDllV-InK~DLa~~v~~dle----vm~~da~~~n---p~~~ii~~n~k 184 (202)
T COG0378 117 GDHLRVVVIDVTEGEDIPRKGGPGIFK----ADLLV-INKTDLAPYVGADLE----VMARDAKEVN---PEAPIIFTNLK 184 (202)
T ss_pred hhceEEEEEECCCCCCCcccCCCceeE----eeEEE-EehHHhHHHhCccHH----HHHHHHHHhC---CCCCEEEEeCC
Confidence 45 889999999986422210100001 23555 999999875 21112 1222233322 35899999999
Q ss_pred ccccCCCCCCCcccHHHHHHHHhh
Q psy15224 86 LALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 86 ~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+|. ++.++++++..
T Consensus 185 tg~----------G~~~~~~~i~~ 198 (202)
T COG0378 185 TGE----------GLDEWLRFIEP 198 (202)
T ss_pred CCc----------CHHHHHHHHHh
Confidence 987 88888888764
No 368
>COG1084 Predicted GTPase [General function prediction only]
Probab=90.86 E-value=0.82 Score=44.67 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=31.7
Q ss_pred cCCEEEEEEECCC--CCCcchHHHH-HHHH-HhCCCeEEEEEEcCCCCChHHHHHHH
Q psy15224 7 QMDGAILVCSAAD--GPMPQTREHI-LLAR-QVGVPYIVVFLNKADMVDDEELLELV 59 (502)
Q Consensus 7 ~~D~ailvVda~~--g~~~qt~e~l-~~~~-~~~i~~iiv~iNK~D~~~~~~~~~~i 59 (502)
..+++++++|+++ |..-....|| ..++ ..+.| +++|+||+|..+. +.++++
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p-~v~V~nK~D~~~~-e~~~~~ 301 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAP-IVVVINKIDIADE-EKLEEI 301 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCC-eEEEEecccccch-hHHHHH
Confidence 3688999999986 5443333333 3333 34544 6666999999975 444433
No 369
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=90.81 E-value=0.59 Score=42.03 Aligned_cols=62 Identities=26% Similarity=0.401 Sum_probs=43.4
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 72 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 72 (502)
.+..||.+++++.+...-...+.+.++.++..+++..+| +||+|.... ...++.++++.+++
T Consensus 111 ~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV-~N~~~~~~~------~~~~~~~~~~~~~~ 172 (179)
T cd03110 111 SLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVV-INKYDLNDE------IAEEIEDYCEEEGI 172 (179)
T ss_pred HHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEE-EeCCCCCcc------hHHHHHHHHHHcCC
Confidence 456799999999987654456677788888889886555 999997542 11244556665554
No 370
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=90.12 E-value=0.42 Score=44.47 Aligned_cols=46 Identities=26% Similarity=0.299 Sum_probs=38.2
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 50 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~ 50 (502)
+..+|.+|.|+|++.--....++.-+++..+|++++-+++||+|..
T Consensus 153 ~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 3569999999999865556667788889999988888889999965
No 371
>KOG0071|consensus
Probab=90.08 E-value=1.5 Score=37.34 Aligned_cols=88 Identities=17% Similarity=0.162 Sum_probs=50.9
Q ss_pred cCCEEEEEEECCCCC-CcchHHHH-HHH---HHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 7 QMDGAILVCSAADGP-MPQTREHI-LLA---RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 7 ~~D~ailvVda~~g~-~~qt~e~l-~~~---~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
.....|+|+|+.+.- .+..++-+ .++ .....+.+|+ .||-|+.+. -.- .++.++|.-....+..+-+.|
T Consensus 84 gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~Lvl-ANkQDlp~A-~~p----qei~d~leLe~~r~~~W~vqp 157 (180)
T KOG0071|consen 84 GTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILIL-ANKQDLPDA-MKP----QEIQDKLELERIRDRNWYVQP 157 (180)
T ss_pred CCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEE-ecCcccccc-cCH----HHHHHHhccccccCCccEeec
Confidence 356789999987641 11112111 122 1234454444 899999875 111 245556543334445677889
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
.||.+|. ++.+=+..|.+.
T Consensus 158 ~~a~~gd----------gL~eglswlsnn 176 (180)
T KOG0071|consen 158 SCALSGD----------GLKEGLSWLSNN 176 (180)
T ss_pred cccccch----------hHHHHHHHHHhh
Confidence 9999887 666666666553
No 372
>KOG0084|consensus
Probab=90.03 E-value=0.92 Score=40.91 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=45.6
Q ss_pred ccCCEEEEEEECCCCCC-cchHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 6 AQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~-~qt~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
..|+++|+|-|.++-.. ..-...+..++. .+++.++| -||+|+.+... .. -++...+...++. .+++.
T Consensus 80 R~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLV-GNK~Dl~~~~~-v~--~~~a~~fa~~~~~----~~f~E 151 (205)
T KOG0084|consen 80 RGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLV-GNKCDLTEKRV-VS--TEEAQEFADELGI----PIFLE 151 (205)
T ss_pred cCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEE-eeccccHhhee-cC--HHHHHHHHHhcCC----cceee
Confidence 46899999999986322 222223334443 45677776 89999976411 10 1233455555443 12999
Q ss_pred ccccccc
Q psy15224 82 GSAKLAL 88 (502)
Q Consensus 82 iSa~~g~ 88 (502)
+||+++.
T Consensus 152 TSAK~~~ 158 (205)
T KOG0084|consen 152 TSAKDST 158 (205)
T ss_pred cccCCcc
Confidence 9999877
No 373
>KOG0088|consensus
Probab=89.21 E-value=1.7 Score=37.58 Aligned_cols=85 Identities=24% Similarity=0.298 Sum_probs=50.6
Q ss_pred ccCCEEEEEEECCCCCCcch-HHHHHHHH-HhC--CCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 6 AQMDGAILVCSAADGPMPQT-REHILLAR-QVG--VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt-~e~l~~~~-~~~--i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
..+|.|+||-|.++--.-|- +.....++ .+| +..+|| -||+|+... + .-...+...+....|. ....
T Consensus 84 RgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IV-GNKiDLEee--R-~Vt~qeAe~YAesvGA-----~y~e 154 (218)
T KOG0088|consen 84 RGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIV-GNKIDLEEE--R-QVTRQEAEAYAESVGA-----LYME 154 (218)
T ss_pred eCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEe-cCcccHHHh--h-hhhHHHHHHHHHhhch-----hhee
Confidence 35799999999886432222 22222232 344 444444 899999653 1 1122344556655553 3667
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
.||+.+. ++.+|++.|..
T Consensus 155 TSAk~N~----------Gi~elFe~Lt~ 172 (218)
T KOG0088|consen 155 TSAKDNV----------GISELFESLTA 172 (218)
T ss_pred ccccccc----------CHHHHHHHHHH
Confidence 8998876 88888777654
No 374
>KOG0093|consensus
Probab=88.78 E-value=0.45 Score=40.62 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=46.2
Q ss_pred ccCCEEEEEEECCCCCCcc-hHHHH---HHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 6 AQMDGAILVCSAADGPMPQ-TREHI---LLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~q-t~e~l---~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
.+|+..||+-|.+....-. ....+ ......+.+.|++ -||+|+.++ ... .-+.-..+..++|| .++.
T Consensus 92 RgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilv-gnKCDmd~e-Rvi--s~e~g~~l~~~LGf-----efFE 162 (193)
T KOG0093|consen 92 RGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILV-GNKCDMDSE-RVI--SHERGRQLADQLGF-----EFFE 162 (193)
T ss_pred hccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEE-ecccCCccc-eee--eHHHHHHHHHHhCh-----HHhh
Confidence 5789999999987632211 11111 2223467786665 899999764 111 11244566777787 3788
Q ss_pred ccccccc
Q psy15224 82 GSAKLAL 88 (502)
Q Consensus 82 iSa~~g~ 88 (502)
.||+.+.
T Consensus 163 tSaK~Ni 169 (193)
T KOG0093|consen 163 TSAKENI 169 (193)
T ss_pred hcccccc
Confidence 8999877
No 375
>KOG0090|consensus
Probab=87.80 E-value=2.7 Score=38.59 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=28.1
Q ss_pred cCCEEEEEEECCCCCC--cchHHHHH-HHH-H---hCCCeEEEEEEcCCCCCh
Q psy15224 7 QMDGAILVCSAADGPM--PQTREHIL-LAR-Q---VGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 7 ~~D~ailvVda~~g~~--~qt~e~l~-~~~-~---~~i~~iiv~iNK~D~~~~ 52 (502)
.+-.+++|||+..-.. ..+-|.+. ++. . .+.+++++|-||-|+...
T Consensus 108 ~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 108 SAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred cceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 5678999999876322 22233332 221 1 345567777999999764
No 376
>KOG0448|consensus
Probab=87.06 E-value=1.5 Score=46.82 Aligned_cols=79 Identities=23% Similarity=0.122 Sum_probs=48.3
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
-.||+.|||+.|..-. .++..|+...-..+.|+|.++.||+|.... ++..+.+..++.++ +-..+..-.--++++||
T Consensus 231 ldaDVfVlV~NaEntl-t~sek~Ff~~vs~~KpniFIlnnkwDasase~ec~e~V~~Qi~eL-~v~~~~eA~DrvfFVS~ 308 (749)
T KOG0448|consen 231 LDADVFVLVVNAENTL-TLSEKQFFHKVSEEKPNIFILNNKWDASASEPECKEDVLKQIHEL-SVVTEKEAADRVFFVSA 308 (749)
T ss_pred hcCCeEEEEecCccHh-HHHHHHHHHHhhccCCcEEEEechhhhhcccHHHHHHHHHHHHhc-CcccHhhhcCeeEEEec
Confidence 3589999999986543 455555544444557877777999999775 44556666665522 11111111224778896
Q ss_pred cc
Q psy15224 85 KL 86 (502)
Q Consensus 85 ~~ 86 (502)
..
T Consensus 309 ~e 310 (749)
T KOG0448|consen 309 KE 310 (749)
T ss_pred cc
Confidence 53
No 377
>COG1161 Predicted GTPases [General function prediction only]
Probab=87.03 E-value=1.4 Score=43.85 Aligned_cols=72 Identities=28% Similarity=0.265 Sum_probs=45.0
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
+..+|+++-|+||.+-......+.-..+.. .+.++| +||.|+.+. ... ++....++.-. ....+++|+
T Consensus 32 ~~~~d~vvevvDar~P~~s~~~~l~~~v~~--k~~i~v-lNK~DL~~~-~~~----~~W~~~~~~~~----~~~~~~v~~ 99 (322)
T COG1161 32 LKSVDVVVEVVDARDPLGTRNPELERIVKE--KPKLLV-LNKADLAPK-EVT----KKWKKYFKKEE----GIKPIFVSA 99 (322)
T ss_pred cccCCEEEEEEeccccccccCccHHHHHcc--CCcEEE-EehhhcCCH-HHH----HHHHHHHHhcC----CCccEEEEe
Confidence 457899999999998776666554444443 344555 999999986 222 23333443321 234567777
Q ss_pred cccc
Q psy15224 85 KLAL 88 (502)
Q Consensus 85 ~~g~ 88 (502)
.++.
T Consensus 100 ~~~~ 103 (322)
T COG1161 100 KSRQ 103 (322)
T ss_pred eccc
Confidence 7655
No 378
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=87.00 E-value=0.37 Score=39.81 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=24.8
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH-----hCCCeEEEEEEcCC
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ-----VGVPYIVVFLNKAD 48 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~-----~~i~~iiv~iNK~D 48 (502)
+..+|+++||.|+.+... .+..+.+..+.. .++|.++ +.||.|
T Consensus 71 ~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piil-v~nK~D 119 (119)
T PF08477_consen 71 LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIIL-VGNKSD 119 (119)
T ss_dssp HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEE-EEE-TC
T ss_pred hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEE-EEeccC
Confidence 467999999999886431 222222222322 2477555 489998
No 379
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=86.88 E-value=1.8 Score=39.12 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=26.2
Q ss_pred cccCCEEEEEEECCCCC--CcchHHHHHHHH---H--hCCCeEEEEEEcCCCCCh
Q psy15224 5 AAQMDGAILVCSAADGP--MPQTREHILLAR---Q--VGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~--~~qt~e~l~~~~---~--~~i~~iiv~iNK~D~~~~ 52 (502)
...+-.+|+|||+..-. ...+-|+|.-+. . .+.+.+++|.||.|+...
T Consensus 73 ~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 73 LSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred hhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 45678999999997411 122334442221 1 133446666999999874
No 380
>PRK09602 translation-associated GTPase; Reviewed
Probab=86.76 E-value=1.6 Score=44.75 Aligned_cols=55 Identities=27% Similarity=0.424 Sum_probs=35.2
Q ss_pred CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHH-HHHHHhhcCCC
Q psy15224 36 GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILS-LSKALDTYIPT 113 (502)
Q Consensus 36 ~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~-Ll~~l~~~~p~ 113 (502)
..|.++ ++||+|+.+.++.+ ..+.+. ++ .+++|+||..+. ++.+ |++.+.+++|.
T Consensus 217 ~KPvI~-VlNK~D~~~~~~~l-------~~i~~~-~~----~~vvpISA~~e~----------~l~~~l~~~i~~~lp~ 272 (396)
T PRK09602 217 SKPMVI-AANKADLPPAEENI-------ERLKEE-KY----YIVVPTSAEAEL----------ALRRAAKAGLIDYIPG 272 (396)
T ss_pred CCCEEE-EEEchhcccchHHH-------HHHHhc-CC----CcEEEEcchhhh----------hHHHHHHHhHHhhCCC
Confidence 466555 59999987532211 222221 32 468999999887 6777 77888887774
No 381
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=86.61 E-value=2.1 Score=33.59 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=41.4
Q ss_pred ccCCCCeEEEecCC----------CCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEe
Q psy15224 448 LYQLDELVRIKDGP----------FTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 501 (502)
Q Consensus 448 ~~~~G~~V~I~~GP----------f~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~ 501 (502)
.|++||+|.|.--| |.|.+|+|+... .+-..|++..=|....+-+..+-|++
T Consensus 32 ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~--g~ay~V~v~~G~k~K~liv~peHLk~ 93 (98)
T COG2139 32 EYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVR--GRAYKVEVYDGNKEKTLIVRPEHLKP 93 (98)
T ss_pred hccCCCEEEEEeCcccccCCCCccccCcceEEEecc--CCEEEEEEecCCceEEEEeCHHHccc
Confidence 58999999988666 899999998766 44688888877777777777776654
No 382
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=86.55 E-value=4.6 Score=37.18 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=28.3
Q ss_pred ccCCEEEEEEECCCCCCcchH-HHHHHHHH----------------------hCCCeEEEEEEcCCCCCh
Q psy15224 6 AQMDGAILVCSAADGPMPQTR-EHILLARQ----------------------VGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~-e~l~~~~~----------------------~~i~~iiv~iNK~D~~~~ 52 (502)
..+|++|||.|.+..-.-+.. ..+..+.. .++|. |+|-||+|+.+.
T Consensus 76 r~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi-ilVGnK~Dl~~~ 144 (202)
T cd04102 76 NQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPL-LVIGTKLDQIPE 144 (202)
T ss_pred CcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceE-EEEEECccchhh
Confidence 569999999999875322111 22222322 24675 455999999763
No 383
>KOG1954|consensus
Probab=86.23 E-value=1.4 Score=43.76 Aligned_cols=49 Identities=31% Similarity=0.295 Sum_probs=39.2
Q ss_pred cccCCEEEEEEECCC-CCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHH
Q psy15224 5 AAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMVDDEE 54 (502)
Q Consensus 5 ~~~~D~ailvVda~~-g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~ 54 (502)
|+.||.++|+.||.+ .+.+.+++.+..++-..-+ +=|++||.|.++.++
T Consensus 179 aeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edk-iRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 179 AERVDRIILLFDAHKLDISDEFKRVIDALKGHEDK-IRVVLNKADQVDTQQ 228 (532)
T ss_pred HHhccEEEEEechhhccccHHHHHHHHHhhCCcce-eEEEeccccccCHHH
Confidence 456999999999986 6788999999988866545 444599999999743
No 384
>KOG1999|consensus
Probab=85.93 E-value=0.78 Score=50.57 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=45.6
Q ss_pred cccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEe
Q psy15224 447 ILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 501 (502)
Q Consensus 447 ~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~ 501 (502)
..|.+||.|+|+.|-+.|+.|.|..++. ..+++.-+.=+..-+++++...|+|
T Consensus 406 ~~F~~GD~VeV~~Gel~glkG~ve~vdg--~~vti~~~~e~l~~pl~~~~~eLrK 458 (1024)
T KOG1999|consen 406 HLFSPGDAVEVIVGELKGLKGKVESVDG--TIVTIMSKHEDLKGPLEVPASELRK 458 (1024)
T ss_pred cccCCCCeEEEeeeeeccceeEEEeccC--ceEEEeeccccCCCccccchHhhhh
Confidence 3599999999999999999999999994 4788888877777888888887766
No 385
>KOG0098|consensus
Probab=85.68 E-value=2.4 Score=37.95 Aligned_cols=75 Identities=23% Similarity=0.193 Sum_probs=46.7
Q ss_pred ccCCEEEEEEECCCCC-CcchHHHHHHHHHhCCC--eEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 6 AQMDGAILVCSAADGP-MPQTREHILLARQVGVP--YIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 6 ~~~D~ailvVda~~g~-~~qt~e~l~~~~~~~i~--~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
..|-.||||-|.+.-- +.....+|.-++..+-+ .|+++-||+|+....+ --.++-..+.++-|+ .+.-.
T Consensus 77 r~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~---Vs~EEGeaFA~ehgL-----ifmET 148 (216)
T KOG0098|consen 77 RGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARRE---VSKEEGEAFAREHGL-----IFMET 148 (216)
T ss_pred ccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcccc---ccHHHHHHHHHHcCc-----eeehh
Confidence 3577899999987532 23334455555555322 3455589999976421 122455667776554 57789
Q ss_pred cccccc
Q psy15224 83 SAKLAL 88 (502)
Q Consensus 83 Sa~~g~ 88 (502)
||+++.
T Consensus 149 Sakt~~ 154 (216)
T KOG0098|consen 149 SAKTAE 154 (216)
T ss_pred hhhhhh
Confidence 999987
No 386
>KOG1145|consensus
Probab=84.82 E-value=3.2 Score=43.37 Aligned_cols=103 Identities=17% Similarity=0.274 Sum_probs=68.2
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCC-CeE--EEEEEEEEeeeecCCEEEEeecCCCeeE---EEEEEEEc
Q psy15224 100 ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG-RGT--VVTGRVERGIVRVGEELEIIGIKDTVKT---TCTGVEMF 173 (502)
Q Consensus 100 i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~-~G~--v~~g~v~sG~l~~gd~v~i~p~~~~~~~---~V~~i~~~ 173 (502)
++++-+.|...+|+-... .---...|...|.+.. +.+ ++.++|-.|++.+...+.+.- ++..+ .+.|+...
T Consensus 558 ieDv~~~ls~rlp~v~e~-~vvGea~Vl~~F~i~~~rkr~~VAGC~V~~G~~~K~~~~rlvR--~g~vV~~G~l~SlKh~ 634 (683)
T KOG1145|consen 558 IEDVRELLSERLPPVEEQ-EVVGEAEVLATFDIREKRKRVPVAGCRVNNGVIKKSCKIRLVR--NGKVVFEGELDSLKHL 634 (683)
T ss_pred HHHHHHHHHhhCCCceEE-eeccceeeeeeEeeccccccccccceEeecceEeecceEEEEe--CCcEEEEechhHHhhh
Confidence 345555666656542110 0011234566666544 233 899999999999999999874 44433 34455555
Q ss_pred ceecceeecCCeEEEEecCCCccCcccceEEeC
Q psy15224 174 RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAK 206 (502)
Q Consensus 174 ~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 206 (502)
.+++.++..|.-|++.++. ...+.+.||.|..
T Consensus 635 KedV~~vkkg~ECGl~~~d-~~~~f~~GD~i~~ 666 (683)
T KOG1145|consen 635 KEDVTEVKKGHECGLTFDD-GNEDFKEGDKIQC 666 (683)
T ss_pred hhhhhhhcCCCeeeeEecc-CCcCCCcCCEEEE
Confidence 6899999999999999985 3358889998853
No 387
>COG5164 SPT5 Transcription elongation factor [Transcription]
Probab=83.97 E-value=8.7 Score=39.06 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=35.0
Q ss_pred cCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCce
Q psy15224 449 YQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQV 499 (502)
Q Consensus 449 ~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v 499 (502)
...|..|||..||++|.-|+|.++++. .++|+|.-- ..-|+++-+.|
T Consensus 352 ~aigktVrIr~g~yKG~lGVVKdv~~~--~arVeLhs~--nK~VTI~K~~l 398 (607)
T COG5164 352 PAIGKTVRIRCGEYKGHLGVVKDVDRN--IARVELHSN--NKFVTIEKSRL 398 (607)
T ss_pred cccCceEEEeecccccccceeeeccCc--eEEEEEecC--CceEEeehhhe
Confidence 467999999999999999999999954 566655543 34466665543
No 388
>PLN00023 GTP-binding protein; Provisional
Probab=82.57 E-value=2.4 Score=41.94 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=37.5
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHHh---------------CCCeEEEEEEcCCCCChHH-HH--HHHHHHHHH
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQV---------------GVPYIVVFLNKADMVDDEE-LL--ELVEIEIRE 65 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~---------------~i~~iiv~iNK~D~~~~~~-~~--~~i~~~i~~ 65 (502)
...+|++|+|.|.+.--. ......+..+... +++ +++|.||+|+.+.+. +. ....++..+
T Consensus 104 yr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ip-IILVGNK~DL~~~~~~r~~s~~~~e~a~~ 182 (334)
T PLN00023 104 YSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVP-YIVIGNKADIAPKEGTRGSSGNLVDAARQ 182 (334)
T ss_pred ccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCc-EEEEEECccccccccccccccccHHHHHH
Confidence 357999999999876211 1112223333332 356 455599999975311 10 112345666
Q ss_pred HHhhcCCC
Q psy15224 66 LLNKYEFP 73 (502)
Q Consensus 66 ~l~~~~~~ 73 (502)
+.++.++-
T Consensus 183 ~A~~~g~l 190 (334)
T PLN00023 183 WVEKQGLL 190 (334)
T ss_pred HHHHcCCC
Confidence 77766653
No 389
>KOG0083|consensus
Probab=81.43 E-value=2.3 Score=35.71 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=42.2
Q ss_pred ccCCEEEEEEECCCCCC-cchHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 6 AQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~-~qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
..||..+|+-|...-.. ..-+..+..+..+ .+...++ -||+|+..... .. .++=..+.+.++ +||..
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v~l~ll-gnk~d~a~er~-v~--~ddg~kla~~y~-----ipfme 139 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLL-GNKCDLAHERA-VK--RDDGEKLAEAYG-----IPFME 139 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhh-ccccccchhhc-cc--cchHHHHHHHHC-----CCcee
Confidence 46899999999775322 2222222222222 2232344 79999976311 00 012233444444 58999
Q ss_pred ccccccccCC
Q psy15224 82 GSAKLALEGD 91 (502)
Q Consensus 82 iSa~~g~~~~ 91 (502)
.||++|.|.+
T Consensus 140 tsaktg~nvd 149 (192)
T KOG0083|consen 140 TSAKTGFNVD 149 (192)
T ss_pred ccccccccHh
Confidence 9999999544
No 390
>KOG2423|consensus
Probab=81.08 E-value=4.3 Score=40.70 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=32.2
Q ss_pred ccCCEEEEEEECCCCCCcchHHHH-HHHHH-hCCCeEEEEEEcCCCCCh
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHI-LLARQ-VGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l-~~~~~-~~i~~iiv~iNK~D~~~~ 52 (502)
-.+|++|-|+||.+.....- .|+ ..++. .--+|+|.++||+||+..
T Consensus 212 DSSDVvvqVlDARDPmGTrc-~~ve~ylkke~phKHli~vLNKvDLVPt 259 (572)
T KOG2423|consen 212 DSSDVVVQVLDARDPMGTRC-KHVEEYLKKEKPHKHLIYVLNKVDLVPT 259 (572)
T ss_pred cccceeEEeeeccCCccccc-HHHHHHHhhcCCcceeEEEeeccccccH
Confidence 45899999999997544333 343 33333 345689999999999874
No 391
>KOG0394|consensus
Probab=79.58 E-value=8.1 Score=34.67 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=46.7
Q ss_pred ccCCEEEEEEECCCCCC--cchHHHHHHHHHhC------CCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15224 6 AQMDGAILVCSAADGPM--PQTREHILLARQVG------VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 77 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~--~qt~e~l~~~~~~~------i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 77 (502)
..||.++|+-|.+.--. .-...|=+++.... .|.+|+ -||+|..+.+.+.. -.+...+..+.-+ ++
T Consensus 80 RgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVil-GNKiD~~~~~~r~V-S~~~Aq~WC~s~g----ni 153 (210)
T KOG0394|consen 80 RGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVIL-GNKIDVDGGKSRQV-SEKKAQTWCKSKG----NI 153 (210)
T ss_pred cCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEE-cccccCCCCcccee-eHHHHHHHHHhcC----Cc
Confidence 56999999988775322 22233334444433 465555 89999966322211 1234455665433 68
Q ss_pred eEEEccccccc
Q psy15224 78 PIIKGSAKLAL 88 (502)
Q Consensus 78 ~ii~iSa~~g~ 88 (502)
|.+-+||+.+.
T Consensus 154 pyfEtSAK~~~ 164 (210)
T KOG0394|consen 154 PYFETSAKEAT 164 (210)
T ss_pred eeEEecccccc
Confidence 99999999987
No 392
>KOG3905|consensus
Probab=79.13 E-value=6.1 Score=38.66 Aligned_cols=62 Identities=26% Similarity=0.388 Sum_probs=44.3
Q ss_pred HHHhCCCeEEEEEEcCCCCC-------h-HHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHHH
Q psy15224 32 ARQVGVPYIVVFLNKADMVD-------D-EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSL 103 (502)
Q Consensus 32 ~~~~~i~~iiv~iNK~D~~~-------~-~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~L 103 (502)
...+|++.++| +||+|.+. + ++.|+.+...|+.|+-++|. ..|+.|++... +++-|
T Consensus 218 t~NlGi~vlVV-~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-----aLiyTSvKE~K----------Nidll 281 (473)
T KOG3905|consen 218 THNLGIPVLVV-CTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-----ALIYTSVKETK----------NIDLL 281 (473)
T ss_pred hhcCCCcEEEE-EeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-----eeEEeeccccc----------chHHH
Confidence 45789996665 99999843 1 45678888888888877664 58899998765 55555
Q ss_pred HHHHhh
Q psy15224 104 SKALDT 109 (502)
Q Consensus 104 l~~l~~ 109 (502)
..+|..
T Consensus 282 yKYivh 287 (473)
T KOG3905|consen 282 YKYIVH 287 (473)
T ss_pred HHHHHH
Confidence 555544
No 393
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=79.02 E-value=3.9 Score=40.63 Aligned_cols=67 Identities=30% Similarity=0.262 Sum_probs=42.0
Q ss_pred ccCCEEEEEEECCCCCCcch---HHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 6 AQMDGAILVCSAADGPMPQT---REHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt---~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
...|.++-||||........ ....+++.. --+|+ +||.|+++.++ . +.+...+.++.- ..+++..
T Consensus 115 ~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD~iv-lNK~Dlv~~~~-l----~~l~~~l~~lnp---~A~i~~~ 182 (323)
T COG0523 115 VRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---ADVIV-LNKTDLVDAEE-L----EALEARLRKLNP---RARIIET 182 (323)
T ss_pred eeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---CcEEE-EecccCCCHHH-H----HHHHHHHHHhCC---CCeEEEc
Confidence 34688999999998665443 222233333 33666 89999999732 2 344555555442 4678887
Q ss_pred cc
Q psy15224 83 SA 84 (502)
Q Consensus 83 Sa 84 (502)
|.
T Consensus 183 ~~ 184 (323)
T COG0523 183 SY 184 (323)
T ss_pred cc
Confidence 76
No 394
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=77.76 E-value=4.1 Score=37.40 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=35.9
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 51 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~ 51 (502)
..+|.+|+|+++...-..+..+.+..+...+.+.+-+++||.|...
T Consensus 149 ~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 149 RACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred HhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 4589999999987665566777788888888887777799988654
No 395
>KOG0095|consensus
Probab=77.54 E-value=7.6 Score=33.33 Aligned_cols=86 Identities=26% Similarity=0.196 Sum_probs=48.5
Q ss_pred cCCEEEEEEECCCCCC-cchHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 7 QMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 7 ~~D~ailvVda~~g~~-~qt~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
.|++.||+-|....+. .-.-+.|..+.. ..+-.|+| -||+|+.+..+.-+ ++-+-+....+ --++..
T Consensus 79 sahalilvydiscqpsfdclpewlreie~yan~kvlkilv-gnk~d~~drrevp~----qigeefs~~qd----myflet 149 (213)
T KOG0095|consen 79 SAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILV-GNKIDLADRREVPQ----QIGEEFSEAQD----MYFLET 149 (213)
T ss_pred hcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEee-ccccchhhhhhhhH----HHHHHHHHhhh----hhhhhh
Confidence 4788999999886543 333344444332 23334555 89999987533333 33333322221 236678
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
||+... +++.|+..+...+
T Consensus 150 sakea~----------nve~lf~~~a~rl 168 (213)
T KOG0095|consen 150 SAKEAD----------NVEKLFLDLACRL 168 (213)
T ss_pred cccchh----------hHHHHHHHHHHHH
Confidence 998766 6777766554433
No 396
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=76.87 E-value=14 Score=37.41 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=55.1
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCC------------CChHHHHHHHHHHHHHHHhhcC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM------------VDDEELLELVEIEIRELLNKYE 71 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~------------~~~~~~~~~i~~~i~~~l~~~~ 71 (502)
+...-|+.|++.+ +-...-+...+..+..+|.+..+| -||+|. .+.+..++++.+...+-|+..+
T Consensus 111 ~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfV-RTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~g 187 (376)
T PF05049_consen 111 KFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFV-RTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAG 187 (376)
T ss_dssp TGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEE-E--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT
T ss_pred cccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEE-EecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcC
Confidence 4567787666554 234455566677788899885555 999995 1113455677777777777666
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCC
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 114 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~ 114 (502)
.. ..+++.+|..+-. .| ....|.+.|...+|..
T Consensus 188 v~--~P~VFLVS~~dl~----~y----DFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 188 VS--EPQVFLVSSFDLS----KY----DFPKLEETLEKDLPAH 220 (376)
T ss_dssp -S--S--EEEB-TTTTT----ST----THHHHHHHHHHHS-GG
T ss_pred CC--cCceEEEeCCCcc----cC----ChHHHHHHHHHHhHHH
Confidence 53 3578889986421 11 4667778887777643
No 397
>KOG0395|consensus
Probab=74.78 E-value=13 Score=34.05 Aligned_cols=86 Identities=31% Similarity=0.378 Sum_probs=47.4
Q ss_pred cccCCEEEEEEECCCCC-C---cchHHHHHHHH-HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGP-M---PQTREHILLAR-QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-~---~qt~e~l~~~~-~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|+-++|-+.++-- + .+.++++...+ ...+|.++| -||.|+...... ..++-..+.... ..++
T Consensus 72 ~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlV-GNK~Dl~~~R~V---~~eeg~~la~~~-----~~~f 142 (196)
T KOG0395|consen 72 IRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILV-GNKCDLERERQV---SEEEGKALARSW-----GCAF 142 (196)
T ss_pred hccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEE-EEcccchhcccc---CHHHHHHHHHhc-----CCcE
Confidence 34568888888887632 1 23333332222 233575555 999999763110 112233333332 3569
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+-+||.... ++.+++..|..
T Consensus 143 ~E~Sak~~~----------~v~~~F~~L~r 162 (196)
T KOG0395|consen 143 IETSAKLNY----------NVDEVFYELVR 162 (196)
T ss_pred EEeeccCCc----------CHHHHHHHHHH
Confidence 999998765 55565555543
No 398
>KOG1144|consensus
Probab=74.33 E-value=7.1 Score=42.40 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=45.8
Q ss_pred eEEEEEEEEEeeeecCCEEEEeecCCC-eeEEEEEEEEcceecceeecCCeEEEEecC
Q psy15224 136 GTVVTGRVERGIVRVGEELEIIGIKDT-VKTTCTGVEMFRKLLDQGQAGDNIGLLLRG 192 (502)
Q Consensus 136 G~v~~g~v~sG~l~~gd~v~i~p~~~~-~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~ 192 (502)
..++...|..|.|+.|--+-+ |.+.+ .-.+|.||+++|.+++.|..|+-|++.+.+
T Consensus 951 Piv~GV~V~~GilkiGTPiCv-~~r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~ 1007 (1064)
T KOG1144|consen 951 PIVLGVDVEEGILKIGTPICV-PKREFIDLGRVASIENNHKPVDYAKKGQEVAIKIEA 1007 (1064)
T ss_pred CeEEEEEeecCeeecCCceEE-eccceeeeeeeeeecccCcccchhhcCCeEEEEEec
Confidence 346778999999999988765 44433 356899999999999999999999997754
No 399
>KOG0077|consensus
Probab=73.94 E-value=4.4 Score=35.63 Aligned_cols=45 Identities=20% Similarity=0.357 Sum_probs=33.2
Q ss_pred cCCEEEEEEECCC-CCCcchHHHHHHHHH----hCCCeEEEEEEcCCCCCh
Q psy15224 7 QMDGAILVCSAAD-GPMPQTREHILLARQ----VGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 7 ~~D~ailvVda~~-g~~~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~ 52 (502)
.+|.++++|||.+ ..+...+++++.+.. ..+|.+|. .||+|....
T Consensus 87 ~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lil-gnKId~p~a 136 (193)
T KOG0077|consen 87 QVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLIL-GNKIDIPYA 136 (193)
T ss_pred hhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceee-cccccCCCc
Confidence 5899999999986 344556666655442 56897776 999999875
No 400
>KOG0410|consensus
Probab=73.94 E-value=4.8 Score=39.43 Aligned_cols=79 Identities=24% Similarity=0.206 Sum_probs=52.4
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHHhCCC------eEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQVGVP------YIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 77 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~~i~------~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 77 (502)
+..||+.+-|+|.++..- .|-...+..+..+|++ .+|=|=||+|....+ . ..+..
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-------------~-----e~E~n 316 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-------------V-----EEEKN 316 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-------------C-----ccccC
Confidence 356899999999987543 4555567778888886 222235666654320 0 11112
Q ss_pred eEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 78 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 78 ~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
-.+++||++|. ++++|++.+....
T Consensus 317 ~~v~isaltgd----------gl~el~~a~~~kv 340 (410)
T KOG0410|consen 317 LDVGISALTGD----------GLEELLKAEETKV 340 (410)
T ss_pred CccccccccCc----------cHHHHHHHHHHHh
Confidence 26789999998 8999999887643
No 401
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=73.83 E-value=6 Score=35.12 Aligned_cols=49 Identities=20% Similarity=0.208 Sum_probs=37.1
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 51 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~ 51 (502)
.++..+|.+++++++...-...+...++.+...+.+.+.+++|++|...
T Consensus 80 ~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 80 TAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred HHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 3467899999999988765566666777777777776666799998754
No 402
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=73.61 E-value=3.5 Score=37.04 Aligned_cols=45 Identities=33% Similarity=0.454 Sum_probs=26.5
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChH
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE 53 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~ 53 (502)
..+.++-||||..-....+... .+......-.+|+ +||+|+++.+
T Consensus 113 ~~~~iI~vVDa~~~~~~~~~~~-~~~~Qi~~ADvIv-lnK~D~~~~~ 157 (178)
T PF02492_consen 113 RLDSIITVVDATNFDELENIPE-LLREQIAFADVIV-LNKIDLVSDE 157 (178)
T ss_dssp SESEEEEEEEGTTHGGHTTHCH-HHHHHHCT-SEEE-EE-GGGHHHH
T ss_pred cccceeEEeccccccccccchh-hhhhcchhcCEEE-EeccccCChh
Confidence 3578899999965322222222 2234455556777 9999999863
No 403
>KOG2485|consensus
Probab=73.02 E-value=15 Score=35.95 Aligned_cols=45 Identities=27% Similarity=0.190 Sum_probs=32.0
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~ 52 (502)
+...|++|=|=||.-.+.+--...-+.+. -.++||| .|||||.+.
T Consensus 44 l~~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~riiV-lNK~DLad~ 88 (335)
T KOG2485|consen 44 LPLVDCIIEVRDARIPLSSRNELFQDFLP--PKPRIIV-LNKMDLADP 88 (335)
T ss_pred cccccEEEEeeccccCCccccHHHHHhcC--CCceEEE-EecccccCc
Confidence 56789999999998766543333323333 5678887 999999995
No 404
>KOG1980|consensus
Probab=71.80 E-value=22 Score=37.97 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=47.9
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhh
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNK 69 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~ 69 (502)
+.++..||+++++.+|.+-...-.++.+..+.+.|+|.++.++ +||..- +..-.+++..+...++.
T Consensus 136 lD~~kv~D~~~f~~s~~~~~~e~ge~i~~~~~~qGi~s~v~~v--~~L~sv~~K~r~~vkK~l~~~~~k 202 (754)
T KOG1980|consen 136 LDAAKVSDFVVFLLSAVEEDDEFGEQIIRALEAQGIPSYVSVV--SDLSSVHEKFRLDVKKALEKRISK 202 (754)
T ss_pred hhhhhhcceeeeecchhhhhhHHHHHHHHHHhhcCCccceeee--cccchhchhhhHHHHHHHHHHHHH
Confidence 5678899999999999876666667788999999999998877 666432 23334455555555554
No 405
>KOG0081|consensus
Probab=71.17 E-value=9.4 Score=33.24 Aligned_cols=60 Identities=27% Similarity=0.289 Sum_probs=38.7
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 37 VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 37 i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
-|-||++-||.|+.+.... -.++...+..+++ .|.+..||-+|.|.. ..++.|++.+.+.
T Consensus 124 ~PDivlcGNK~DL~~~R~V---s~~qa~~La~kyg-----lPYfETSA~tg~Nv~------kave~LldlvM~R 183 (219)
T KOG0081|consen 124 NPDIVLCGNKADLEDQRVV---SEDQAAALADKYG-----LPYFETSACTGTNVE------KAVELLLDLVMKR 183 (219)
T ss_pred CCCEEEEcCccchhhhhhh---hHHHHHHHHHHhC-----CCeeeeccccCcCHH------HHHHHHHHHHHHH
Confidence 4778888999999874111 1234555666666 479999999987432 2455566665443
No 406
>PRK04306 50S ribosomal protein L21e; Reviewed
Probab=70.99 E-value=13 Score=29.63 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=40.9
Q ss_pred ccCCCCeEEEecCC----------CCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEe
Q psy15224 448 LYQLDELVRIKDGP----------FTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 501 (502)
Q Consensus 448 ~~~~G~~V~I~~GP----------f~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~ 501 (502)
.|++||.|.|.--| |.|.+|+|..+..+ -+.|.+..-|+...+.+..+.|++
T Consensus 34 ~y~~Gd~V~I~~d~sv~kGmPh~~yhGkTG~V~~v~~~--A~~V~v~vg~k~Kri~vr~eHlk~ 95 (98)
T PRK04306 34 EFEEGDKVHIVIDPSVHKGMPHPRFHGKTGTVVGKRGR--AYIVEVKDGGKEKTLIVRPEHLRP 95 (98)
T ss_pred hccCCCEEEEEecCceecCCccccccCCCEEEEeecCe--EEEEEEEECCceeEEEcCHHHcCc
Confidence 48899999887544 68999999987753 577778888888888887777764
No 407
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=70.80 E-value=28 Score=31.89 Aligned_cols=46 Identities=26% Similarity=0.393 Sum_probs=31.5
Q ss_pred ccCCEEEEEEECCC--CCCcchHHHHHHHHHhC---CCeEEEEEEcCCCCCh
Q psy15224 6 AQMDGAILVCSAAD--GPMPQTREHILLARQVG---VPYIVVFLNKADMVDD 52 (502)
Q Consensus 6 ~~~D~ailvVda~~--g~~~qt~e~l~~~~~~~---i~~iiv~iNK~D~~~~ 52 (502)
..++.++++.|... ....-+++....+..+. .+ ++++-||+|+.+.
T Consensus 76 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~ 126 (219)
T COG1100 76 RGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVP-ILLVGNKIDLFDE 126 (219)
T ss_pred cCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCce-EEEEecccccccc
Confidence 56899999999885 33344444454555544 56 5555999999876
No 408
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=70.36 E-value=17 Score=29.98 Aligned_cols=83 Identities=17% Similarity=0.104 Sum_probs=57.0
Q ss_pred HHHHHHHHHhCCCeEEEEEEcCCCCCh---HHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHH
Q psy15224 26 REHILLARQVGVPYIVVFLNKADMVDD---EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILS 102 (502)
Q Consensus 26 ~e~l~~~~~~~i~~iiv~iNK~D~~~~---~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~ 102 (502)
-+.+..+...|..-++|+=-|++-+++ +...+.-.+-+.++|+.+|..++.+.++-+||-.+... .+.+.+
T Consensus 43 ~~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf------~e~~~e 116 (132)
T COG1908 43 PEFVLKALRKGADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKF------AETINE 116 (132)
T ss_pred HHHHHHHHHcCCCeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHH------HHHHHH
Confidence 445556677799988888899998875 23334445567788999999888899999999766410 013455
Q ss_pred HHHHHhhcCCCC
Q psy15224 103 LSKALDTYIPTP 114 (502)
Q Consensus 103 Ll~~l~~~~p~~ 114 (502)
+.+.|.++-|.|
T Consensus 117 fv~~i~~lGpnp 128 (132)
T COG1908 117 FVERIKELGPNP 128 (132)
T ss_pred HHHHHHHhCCCc
Confidence 666666654544
No 409
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=70.28 E-value=11 Score=26.43 Aligned_cols=44 Identities=25% Similarity=0.393 Sum_probs=30.0
Q ss_pred CCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEe
Q psy15224 450 QLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVEL 494 (502)
Q Consensus 450 ~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~ 494 (502)
..|++.-|.+||.....|.|.+ +..+..-...+-+-++.+.|++
T Consensus 4 i~gqkayikdgp~rnrigivk~-~e~q~~~~f~ivi~~q~i~vel 47 (68)
T PF13051_consen 4 IVGQKAYIKDGPYRNRIGIVKK-NEKQLESHFAIVIGEQSIDVEL 47 (68)
T ss_pred ccccEeeeccCCccceeEEEec-chhhcCCcEEEEECCeEEEEEe
Confidence 3689999999999999999986 3333333444445555555544
No 410
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=69.96 E-value=12 Score=34.75 Aligned_cols=44 Identities=20% Similarity=0.168 Sum_probs=36.5
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 50 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~ 50 (502)
.+|.+++|+.+..-...++++.+..++..+++..-+++|++...
T Consensus 140 ~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 140 ERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 35889999998877778888999999999988766779998754
No 411
>KOG4252|consensus
Probab=67.17 E-value=16 Score=32.64 Aligned_cols=75 Identities=24% Similarity=0.306 Sum_probs=42.8
Q ss_pred ccCCEEEEEEECCCC-CCcchHHHHHHH--HHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 6 AQMDGAILVCSAADG-PMPQTREHILLA--RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 6 ~~~D~ailvVda~~g-~~~qt~e~l~~~--~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
..|.+.+||.+.++- -+..+.+.-... .-..||.++| -||+|+++....-. .+...+.+.+. ..++-.
T Consensus 91 rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~v-qNKIDlveds~~~~---~evE~lak~l~-----~RlyRt 161 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFV-QNKIDLVEDSQMDK---GEVEGLAKKLH-----KRLYRT 161 (246)
T ss_pred ccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEe-eccchhhHhhhcch---HHHHHHHHHhh-----hhhhhh
Confidence 356778899887653 224444433322 3356897666 99999987522111 23333444332 235667
Q ss_pred ccccccc
Q psy15224 83 SAKLALE 89 (502)
Q Consensus 83 Sa~~g~~ 89 (502)
|++...|
T Consensus 162 Svked~N 168 (246)
T KOG4252|consen 162 SVKEDFN 168 (246)
T ss_pred hhhhhhh
Confidence 8887764
No 412
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=67.06 E-value=17 Score=29.95 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=31.0
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCce
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQV 499 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v 499 (502)
.+++||+|. +.| |+.|+|.+++.....+.++++ | +.+++.-..|
T Consensus 36 sLk~GD~Vv-T~G---Gi~G~V~~I~~~~~~v~le~~--g--v~i~v~r~AI 79 (113)
T PRK06531 36 AIQKGDEVV-TIG---GLYGTVDEVDTEAKTIVLDVD--G--VYLTFELAAI 79 (113)
T ss_pred hcCCCCEEE-ECC---CcEEEEEEEecCCCEEEEEEC--C--EEEEEEhhHh
Confidence 488999996 666 899999999865556666642 3 5566554443
No 413
>KOG0087|consensus
Probab=66.41 E-value=16 Score=33.49 Aligned_cols=72 Identities=21% Similarity=0.159 Sum_probs=42.5
Q ss_pred ccCCEEEEEEECCCCCCcchHHH----HHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 6 AQMDGAILVCSAADGPMPQTREH----ILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~----l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
..|-.|+||-|.+. .||-++ |..|+. .++.. +++-||.||.+.... -.++-+.+.+.-+ ..
T Consensus 85 rgAvGAllVYDITr---~~Tfenv~rWL~ELRdhad~nivi-mLvGNK~DL~~lraV---~te~~k~~Ae~~~-----l~ 152 (222)
T KOG0087|consen 85 RGAVGALLVYDITR---RQTFENVERWLKELRDHADSNIVI-MLVGNKSDLNHLRAV---PTEDGKAFAEKEG-----LF 152 (222)
T ss_pred cccceeEEEEechh---HHHHHHHHHHHHHHHhcCCCCeEE-EEeecchhhhhcccc---chhhhHhHHHhcC-----ce
Confidence 35778999999876 344444 344443 34554 444899999762110 0122333443322 46
Q ss_pred EEEcccccccc
Q psy15224 79 IIKGSAKLALE 89 (502)
Q Consensus 79 ii~iSa~~g~~ 89 (502)
|+.+||+.+.|
T Consensus 153 f~EtSAl~~tN 163 (222)
T KOG0087|consen 153 FLETSALDATN 163 (222)
T ss_pred EEEeccccccc
Confidence 89999998873
No 414
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=66.39 E-value=12 Score=39.30 Aligned_cols=63 Identities=25% Similarity=0.361 Sum_probs=43.3
Q ss_pred HHhCCCeEEEEEEcCCCCC-------h-HHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHHHH
Q psy15224 33 RQVGVPYIVVFLNKADMVD-------D-EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLS 104 (502)
Q Consensus 33 ~~~~i~~iiv~iNK~D~~~-------~-~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll 104 (502)
..+|+|.+|| ++|.|... + ++.++.+...|+.++-.+| ...+++|.+... ++..|.
T Consensus 193 ~nlGipi~VV-~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-----AsL~yts~~~~~----------n~~~L~ 256 (472)
T PF05783_consen 193 ENLGIPIVVV-CTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-----ASLIYTSVKEEK----------NLDLLY 256 (472)
T ss_pred cccCcceEEE-EecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-----CeEEEeeccccc----------cHHHHH
Confidence 4579995555 99999743 2 4566777777777776555 358888987654 666677
Q ss_pred HHHhhcC
Q psy15224 105 KALDTYI 111 (502)
Q Consensus 105 ~~l~~~~ 111 (502)
.+|...+
T Consensus 257 ~yi~h~l 263 (472)
T PF05783_consen 257 KYILHRL 263 (472)
T ss_pred HHHHHHh
Confidence 7766544
No 415
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=66.16 E-value=30 Score=36.75 Aligned_cols=43 Identities=28% Similarity=0.335 Sum_probs=30.9
Q ss_pred chHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCC
Q psy15224 24 QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 72 (502)
Q Consensus 24 qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 72 (502)
-.++|++.++.+|+|.++ ||||.|.-.. +. .+.+++++++.+.
T Consensus 360 NL~RHIenvr~FGvPvVV-AINKFd~DTe-~E----i~~I~~~c~e~Gv 402 (557)
T PRK13505 360 NLERHIENIRKFGVPVVV-AINKFVTDTD-AE----IAALKELCEELGV 402 (557)
T ss_pred HHHHHHHHHHHcCCCEEE-EEeCCCCCCH-HH----HHHHHHHHHHcCC
Confidence 345799999999999655 5999998664 22 2356667776654
No 416
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=65.29 E-value=23 Score=27.56 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=30.1
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceE
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVE 500 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~ 500 (502)
.+++||+|.-.+ |+.|+|.+++.+ .+.+++ - ..+.++++...+.
T Consensus 37 ~L~~Gd~VvT~g----Gi~G~V~~i~d~--~v~vei--~-~g~~i~~~r~aI~ 80 (84)
T TIGR00739 37 SLKKGDKVLTIG----GIIGTVTKIAEN--TIVIEL--N-DNTEITFSKNAIV 80 (84)
T ss_pred hCCCCCEEEECC----CeEEEEEEEeCC--EEEEEE--C-CCeEEEEEhHHhh
Confidence 588999998544 699999999953 555544 2 3466776655543
No 417
>cd01734 YlxS_C YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.
Probab=65.04 E-value=26 Score=27.05 Aligned_cols=50 Identities=26% Similarity=0.461 Sum_probs=35.3
Q ss_pred CCCeEEEe-cCCCCC---CeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEeC
Q psy15224 451 LDELVRIK-DGPFTD---FSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 502 (502)
Q Consensus 451 ~G~~V~I~-~GPf~g---~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~~ 502 (502)
.|..|.|. ..|+.| +.|.+..++. ..+++.++--++...+++++++|+++
T Consensus 24 ~G~~v~v~~~~~~~~~~~~~G~L~~~~~--~~v~l~~~~~~~~~~~~i~~~~I~ka 77 (83)
T cd01734 24 VGKYVHVKLYQPIDGQKEFEGTLLGVDD--DTVTLEVDIKTRGKTVEIPLDKIAKA 77 (83)
T ss_pred CCCEEEEEEEcccCCeEEEEEEEEeEeC--CEEEEEEecCCCCeEEEEEhHHeeEE
Confidence 56777774 445544 6899999985 35666666555667899999998863
No 418
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=64.34 E-value=19 Score=25.74 Aligned_cols=53 Identities=6% Similarity=0.028 Sum_probs=36.3
Q ss_pred ccCCCCeEEEecCCC-CCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEe
Q psy15224 448 LYQLDELVRIKDGPF-TDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 501 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf-~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~ 501 (502)
.|++|+.|.+..=.- +=++|+|+++.. .++..|.+...+.....+++..+|++
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~~~~~~~e~v~~~~LRp 55 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLTESEPLKETVDWSDLRP 55 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECCCCcccEEEEeHHHccc
Confidence 478999999984111 125699999997 55777777763244556677777765
No 419
>KOG1490|consensus
Probab=62.59 E-value=12 Score=39.01 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=38.7
Q ss_pred EEEEEEECCC--CCC--cchHH-HHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 10 GAILVCSAAD--GPM--PQTRE-HILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 10 ~ailvVda~~--g~~--~qt~e-~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
+++.++|-++ |.+ .|-+- |--.=...+.+.|+ |+||+|....++. .+-..++.+.+..-+ +++++-.|.
T Consensus 250 aVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~Il-vlNK~D~m~~edL-~~~~~~ll~~~~~~~----~v~v~~tS~ 323 (620)
T KOG1490|consen 250 AVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTIL-VLNKIDAMRPEDL-DQKNQELLQTIIDDG----NVKVVQTSC 323 (620)
T ss_pred hheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEE-EeecccccCcccc-CHHHHHHHHHHHhcc----CceEEEecc
Confidence 3566777764 333 33221 11111224556555 4999999875322 222234444444332 478999999
Q ss_pred cccc
Q psy15224 85 KLAL 88 (502)
Q Consensus 85 ~~g~ 88 (502)
.+..
T Consensus 324 ~~ee 327 (620)
T KOG1490|consen 324 VQEE 327 (620)
T ss_pred cchh
Confidence 8754
No 420
>PRK04333 50S ribosomal protein L14e; Validated
Probab=61.91 E-value=19 Score=28.01 Aligned_cols=33 Identities=15% Similarity=0.029 Sum_probs=28.3
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEE
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRV 481 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v 481 (502)
.+++|.-|.+..|+.+|--+.|.++.. .+++.|
T Consensus 3 ~v~~GrvV~~~~Grd~gk~~vIv~i~d-~~~vlV 35 (84)
T PRK04333 3 AIEVGRVCVKTAGREAGRKCVIVDIID-KNFVLV 35 (84)
T ss_pred cccccEEEEEeccCCCCCEEEEEEEec-CCEEEE
Confidence 467999999999999999999999864 457776
No 421
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=61.60 E-value=9.2 Score=31.29 Aligned_cols=33 Identities=42% Similarity=0.641 Sum_probs=15.7
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccc
Q psy15224 43 FLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKL 86 (502)
Q Consensus 43 ~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~ 86 (502)
|.||+|....++-.+. |.+ .+ + ..+++|+||..
T Consensus 1 AaNK~D~~~a~~ni~k----l~~---~~--~--~~~vVp~SA~a 33 (109)
T PF08438_consen 1 AANKADLPAADENIEK----LKE---KY--P--DEPVVPTSAAA 33 (109)
T ss_dssp EEE-GGG-S-HHHHHH----HHH---HH--T--T-EEEEE-HHH
T ss_pred CCccccccccHhHHHH----HHH---hC--C--CCceeeccHHH
Confidence 4799998665333332 222 22 1 35789999863
No 422
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=60.63 E-value=40 Score=26.95 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=29.5
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCc
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQ 498 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~ 498 (502)
.+++||+|. +.| |+.|+|.++..+. +.+.++ ..+.+++..+.
T Consensus 43 sL~kGD~Vv-T~g---Gi~G~V~~v~d~~--v~I~l~---~~~~i~~~k~a 84 (97)
T COG1862 43 SLKKGDEVV-TIG---GIVGTVTKVGDDT--VEIELG---DGTKIKFEKEA 84 (97)
T ss_pred hccCCCEEE-EcC---CeEEEEEEEecCc--EEEEEC---CCeEEEEEHHH
Confidence 488999997 444 7999999999644 555555 45666665443
No 423
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=60.53 E-value=28 Score=24.75 Aligned_cols=39 Identities=28% Similarity=0.572 Sum_probs=29.0
Q ss_pred CCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEe
Q psy15224 450 QLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVEL 494 (502)
Q Consensus 450 ~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~ 494 (502)
.+||.+...+ |++|.|.++. .+.+.|.+..+.-....++
T Consensus 5 ~vGdiIefk~----g~~G~V~kv~--eNSVIVdIT~m~~~~e~~l 43 (57)
T PF09953_consen 5 KVGDIIEFKD----GFTGIVEKVY--ENSVIVDITIMENFDELDL 43 (57)
T ss_pred ccCcEEEEcC----CcEEEEEEEe--cCcEEEEEEecCCccccCC
Confidence 5799999855 5899999998 4478888888765444444
No 424
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=60.14 E-value=39 Score=27.66 Aligned_cols=44 Identities=11% Similarity=0.079 Sum_probs=30.5
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceE
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVE 500 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~ 500 (502)
.+++||+|. +.| |+.|+|.+++. ..+.+++ +..+.+++.-..|.
T Consensus 38 ~Lk~GD~Vv-T~g---Gi~G~V~~I~d--~~v~lei---a~gv~i~~~r~AI~ 81 (109)
T PRK05886 38 SLQPGDRVH-TTS---GLQATIVGITD--DTVDLEI---APGVVTTWMKLAVR 81 (109)
T ss_pred hcCCCCEEE-ECC---CeEEEEEEEeC--CEEEEEE---CCCeEEEEEhhhee
Confidence 589999997 555 79999999984 3555554 23466666655544
No 425
>PF01157 Ribosomal_L21e: Ribosomal protein L21e; InterPro: IPR001147 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L21E family contains proteins from a number of eukaryotic and archaebacterial organisms which include; mammalian L2, Entamoeba histolytica L21, Caenorhabditis elegans L21 (C14B9.7), Saccharomyces cerevisiae (Baker's yeast) L21E (URP1) and Haloarcula marismortui HL31.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_U 1S1I_Q 3O58_T 3IZS_U 3O5H_T 1Q82_R 1KQS_P 3CCJ_Q 3CCQ_Q 1VQ5_Q ....
Probab=59.19 E-value=50 Score=26.52 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=35.4
Q ss_pred ccCCCCeEEEecCC----------CCCCeEEEEEEeCCCcEEEEEEEecCc--ceeEEeecCceEe
Q psy15224 448 LYQLDELVRIKDGP----------FTDFSGNIEEVNYEKSRVRVSVTIFGR--ATPVELEFNQVEK 501 (502)
Q Consensus 448 ~~~~G~~V~I~~GP----------f~g~~g~v~~~~~~~~rv~v~v~~~g~--~~~v~~~~~~v~~ 501 (502)
.|++||.|-|.--| |.|.+|.|..+.++..-+.+.+.+-++ ...+-+-.+-|++
T Consensus 32 ~yk~GD~V~I~id~sv~kGmPh~~yHGkTG~V~~v~~~~~G~~~~~~v~~~~~~K~i~vr~eHlk~ 97 (99)
T PF01157_consen 32 EYKVGDKVDIKIDPSVHKGMPHKRYHGKTGRVFNVTKGARGVAYNKQVKDRIKEKRIIVRPEHLKP 97 (99)
T ss_dssp ---TT-EEEE---TTSSSSS--GGGTTEEEEEEEE-SSCEEEEEEEECSSSCEEEEEEEEGGGEEE
T ss_pred HccCCCEEEEEecCccccCCCcceECCCceeEEEeCCCceEEEEEEEecCCcccEEEEECHHHccc
Confidence 48999999987544 789999999999877666777777776 4456677776654
No 426
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=58.51 E-value=19 Score=35.09 Aligned_cols=64 Identities=22% Similarity=0.272 Sum_probs=44.0
Q ss_pred ccCCEEEEEEECC-CCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCC
Q psy15224 6 AQMDGAILVCSAA-DGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 72 (502)
Q Consensus 6 ~~~D~ailvVda~-~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 72 (502)
...|++|..++++ +|+.+.+.+.+..+..+ ++.|- +|.|.|.... +.+...+..+.+-++..+.
T Consensus 112 ~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIP-vIaKaD~lt~-~el~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 112 TRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIP-VIAKADTLTP-EELQAFKQRIREDLEENNI 176 (281)
T ss_dssp --EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEE-EESTGGGS-H-HHHHHHHHHHHHHHHHTT-
T ss_pred CCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEe-EEecccccCH-HHHHHHHHHHHHHHHHcCc
Confidence 3578999999986 68888888888776654 45444 5999999986 5556677778877776554
No 427
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=58.48 E-value=18 Score=34.03 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=35.3
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 50 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~ 50 (502)
.++..||.+++++++...-...+.+.+..+...+.+.+-+++|+.|..
T Consensus 126 ~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 126 TALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred HHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 345679999999998754445556666777778888666669999864
No 428
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=58.26 E-value=22 Score=30.30 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=30.2
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHH-hCCCeEEEEEEcCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQ-VGVPYIVVFLNKADMV 50 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~-~~i~~iiv~iNK~D~~ 50 (502)
.+..||.++++++++..-...+...+..+.. .+...+.+++|+++..
T Consensus 63 ~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 63 FFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred HHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 4567899999999875433445555655543 2334455569999854
No 429
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=57.50 E-value=25 Score=35.31 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=11.9
Q ss_pred ccCCEEEEEEECCCC
Q psy15224 6 AQMDGAILVCSAADG 20 (502)
Q Consensus 6 ~~~D~ailvVda~~g 20 (502)
...|.++-||||...
T Consensus 122 ~~l~~vvtvVDa~~~ 136 (341)
T TIGR02475 122 VTVDGVVTVVDGPAV 136 (341)
T ss_pred EEeeeEEEEEECchh
Confidence 356889999999754
No 430
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=57.23 E-value=49 Score=32.77 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=26.1
Q ss_pred ccCCEEEEEEECCCCC-----------CcchHHHHHHHHH----hCCCeEEEEEEcCCCC
Q psy15224 6 AQMDGAILVCSAADGP-----------MPQTREHILLARQ----VGVPYIVVFLNKADMV 50 (502)
Q Consensus 6 ~~~D~ailvVda~~g~-----------~~qt~e~l~~~~~----~~i~~iiv~iNK~D~~ 50 (502)
..++++++|||.++-- ...+.+.+.-+.. .+.|.+++ .||.|+.
T Consensus 183 ~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~-~NK~D~f 241 (317)
T cd00066 183 EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILF-LNKKDLF 241 (317)
T ss_pred CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEE-ccChHHH
Confidence 4689999999988621 1112222222211 46776555 9999963
No 431
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=56.76 E-value=73 Score=32.24 Aligned_cols=91 Identities=11% Similarity=0.145 Sum_probs=49.6
Q ss_pred cCcccceEEeCCCC-CCcccEEEEEEEEeecCCCCCCcccccCCeeEEEee--eeeEEEEEEccCCCccccCCCEEEEEE
Q psy15224 196 EDVERGQVLAKPGS-IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFR--TTDVTGSIELPKNKEMVMPGDNVLITV 272 (502)
Q Consensus 196 ~~i~~G~vl~~~~~-~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~v~~ 272 (502)
.+...+.++..+.. +....-....+.|+..+ +......+.+.++ ...++|+++... ++ .+++
T Consensus 252 ~d~~~n~v~v~~~~~l~~~~~~~~~~~w~~~~------~~~~~~~~~~k~R~~~~~~~~~v~~~~-------~~--~~~v 316 (362)
T PRK14664 252 INPQKNTVMLGDAEQLKAEYMLAEQDNIVDEQ------ELFACPDLAVRIRYRSRPIPCRVKRLE-------DG--RLLV 316 (362)
T ss_pred EcCCCCEEEEeChhHhcCCEEEEeccEecCCC------CCCCCceEEEEEccCCCCcCEEEEEec-------CC--eEEE
Confidence 45667777765443 22223333455666432 1111122222222 233445554221 12 3667
Q ss_pred EeCce-EecccCCeEEEEeCCeEEEEEEEe
Q psy15224 273 RLINP-IAMEEGLRFAIREGVQQFIQDNLL 301 (502)
Q Consensus 273 ~~~~p-i~~~~~~r~ilr~~~~~ig~G~i~ 301 (502)
.|++| -.+-+|+-.+|=++...+|+|.|.
T Consensus 317 ~f~~p~~avapGQ~~v~Y~~~~vlGgG~I~ 346 (362)
T PRK14664 317 RFLAEASAIAPGQSAVFYEGRRVLGGAFIA 346 (362)
T ss_pred EeCCCCcCcCCCcEEEEEECCEEEEEEEEc
Confidence 78877 445678888998888999999994
No 432
>KOG0086|consensus
Probab=55.96 E-value=44 Score=29.02 Aligned_cols=74 Identities=22% Similarity=0.272 Sum_probs=41.1
Q ss_pred cCCEEEEEEECCCCC-CcchHHHHHHHHHhCCCeE--EEEEEcCCCCChHH-HHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 7 QMDGAILVCSAADGP-MPQTREHILLARQVGVPYI--VVFLNKADMVDDEE-LLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 7 ~~D~ailvVda~~g~-~~qt~e~l~~~~~~~i~~i--iv~iNK~D~~~~~~-~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
.|-.|+||-|++.-- +......|.-++.+--+.| |+|-||-|+-+..+ .+. +...|.. .+...+...
T Consensus 81 GAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vtfl----EAs~Faq-----Enel~flET 151 (214)
T KOG0086|consen 81 GAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFL----EASRFAQ-----ENELMFLET 151 (214)
T ss_pred cccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHH----HHHhhhc-----ccceeeeee
Confidence 466789999987522 1222223444555554544 34469999976411 111 2233332 123567889
Q ss_pred ccccccc
Q psy15224 83 SAKLALE 89 (502)
Q Consensus 83 Sa~~g~~ 89 (502)
||++|.|
T Consensus 152 Sa~TGeN 158 (214)
T KOG0086|consen 152 SALTGEN 158 (214)
T ss_pred ccccccc
Confidence 9999974
No 433
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=55.81 E-value=19 Score=31.75 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=19.7
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCC
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 48 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D 48 (502)
.+|.+++++.+..--...+.+.+..+...+.+.+-+++|+.+
T Consensus 91 ~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~ 132 (169)
T cd02037 91 PIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSY 132 (169)
T ss_pred CCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 445555555444333344444445555555554434455554
No 434
>KOG1708|consensus
Probab=55.78 E-value=19 Score=32.55 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=30.0
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEE
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRV 481 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v 481 (502)
.|-.||.|+|+.|-=+|-.|.|..+-+++.-+.|
T Consensus 72 ~ff~GDtVeVlvGkDkGkqG~Vtqv~r~~s~VvV 105 (236)
T KOG1708|consen 72 HFFFGDTVEVLVGKDKGKQGEVTQVIRHRSWVVV 105 (236)
T ss_pred eEecCCEEEEEecccCCccceEEEEeecCceEEE
Confidence 4789999999999999999999999987766554
No 435
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=54.02 E-value=38 Score=29.12 Aligned_cols=50 Identities=26% Similarity=0.485 Sum_probs=33.9
Q ss_pred CCCeEEEec-CCCCC---CeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEeC
Q psy15224 451 LDELVRIKD-GPFTD---FSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 502 (502)
Q Consensus 451 ~G~~V~I~~-GPf~g---~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~~ 502 (502)
.|..|+|.- .|..| ++|.+..++. ..+++.++--++...+++++++|+++
T Consensus 86 iG~~v~v~~~~~~~~~~~~~G~L~~~~~--~~i~l~~~~~~~~~~~~I~~~~I~ka 139 (141)
T PF02576_consen 86 IGRKVKVKLKQPVNGRKEFEGKLLEVDE--DEITLEVEGKGKKKEVEIPFSDIKKA 139 (141)
T ss_dssp -SEEEEEE-SS-SSS-SEEEEEEEEEET--TEEEEEEE-SS-EEEEEE-SS--SS-
T ss_pred cCCeEEEEEeccCCCcEEEEEEEEEEeC--CEEEEEECCccceEEEEEEHHHCceE
Confidence 588899884 56666 5899999995 47888777777778999999998764
No 436
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=53.77 E-value=89 Score=31.38 Aligned_cols=111 Identities=15% Similarity=0.163 Sum_probs=61.7
Q ss_pred eeecCCeEEEEecCCC-------ccCcccceEEeCCCCC-CcccEEEEEEEEeecCCCCCCcccccCCeeEEEeeeee--
Q psy15224 179 QGQAGDNIGLLLRGTK-------REDVERGQVLAKPGSI-KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTD-- 248 (502)
Q Consensus 179 ~a~aG~~v~l~l~~~~-------~~~i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~-- 248 (502)
.-.-|++.++.+.+.. ..+++.+.++..+... .......-++.|+... +...+..+.+-++...
T Consensus 233 ~yTiGQR~Gl~I~~~~~~p~yVv~kd~~~n~~~V~~~~~l~~~~l~~~~~~~~~~~------~~~~~~~~~~k~R~~~~~ 306 (356)
T COG0482 233 YYTIGQRKGLGIGGLKGEPWYVVGKDLKKNRLYVGQGEALLSVGLIAEDLNWLDDA------PPEEPLECTAKVRYRQGD 306 (356)
T ss_pred EEecccccccCcCCCCCCCEEEEEEecccCeEEEecchhheeeeeeeecccccccc------cCCCCceEEEEEeccCCC
Confidence 3445667777666532 3567777777765542 2222333344455431 1222333444444433
Q ss_pred EEEEEEccCCCccccCCCEEEEEEEeCceE-ecccCCeEEEEeCCeEEEEEEEee
Q psy15224 249 VTGSIELPKNKEMVMPGDNVLITVRLINPI-AMEEGLRFAIREGVQQFIQDNLLT 302 (502)
Q Consensus 249 ~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi-~~~~~~r~ilr~~~~~ig~G~i~~ 302 (502)
.+|+++... .+...+.+.|..|. .+-+|+..+|-++++..|+|.|-.
T Consensus 307 ~~~~~~~~~-------~~~~~~~v~f~~~~~avtpGQ~~v~Y~~d~~lGgg~I~~ 354 (356)
T COG0482 307 EPCKVKVLS-------DEDVELAVKFDEPQRAVTPGQAAVLYDGDICLGGGIIDT 354 (356)
T ss_pred CceeEEEcc-------CCcceEEEEecCccccccCCcEEEEecCCEEEeeEEeec
Confidence 555555332 22234557777654 456788889988889999999853
No 437
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=53.13 E-value=23 Score=35.11 Aligned_cols=65 Identities=23% Similarity=0.324 Sum_probs=36.0
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
..|.++-||||..+........+ ...+...--+|+ +||+|+++.. +++.+.++.++- ..+++..+
T Consensus 122 ~l~~vvtvvDa~~~~~~~~~~~~-~~~Qi~~AD~Iv-lnK~Dl~~~~-------~~~~~~l~~lnp---~a~i~~~~ 186 (318)
T PRK11537 122 LLDGVIALVDAVHADEQMNQFTI-AQSQVGYADRIL-LTKTDVAGEA-------EKLRERLARINA---RAPVYTVV 186 (318)
T ss_pred EeccEEEEEEhhhhhhhccccHH-HHHHHHhCCEEE-EeccccCCHH-------HHHHHHHHHhCC---CCEEEEec
Confidence 35889999999875432211111 112223334666 8999999842 234455554432 46676543
No 438
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=52.62 E-value=12 Score=30.37 Aligned_cols=33 Identities=9% Similarity=0.142 Sum_probs=17.4
Q ss_pred EEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC
Q psy15224 13 LVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 51 (502)
Q Consensus 13 lvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~ 51 (502)
+++|...+....+...+ ... ..+++ +...|...
T Consensus 46 IIiDtpp~~~~~~~~~l---~~a--D~vlv-vv~~~~~s 78 (106)
T cd03111 46 VVVDLGRSLDEVSLAAL---DQA--DRVFL-VTQQDLPS 78 (106)
T ss_pred EEEeCCCCcCHHHHHHH---HHc--CeEEE-EecCChHH
Confidence 57787766655544433 222 34554 55555544
No 439
>PTZ00065 60S ribosomal protein L14; Provisional
Probab=52.44 E-value=45 Score=28.14 Aligned_cols=40 Identities=25% Similarity=0.194 Sum_probs=33.3
Q ss_pred cccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEE-ecC
Q psy15224 447 ILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVT-IFG 487 (502)
Q Consensus 447 ~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~-~~g 487 (502)
...++|--|.|..||.+|--+.|+++-. .+|+.|.=+ ..|
T Consensus 6 rfVEiGRVvli~~Gp~~GKL~vIVDIID-~nRvLVDGP~~tg 46 (130)
T PTZ00065 6 RFVEPGRLCLIQYGPDAGKLCFIVDIVT-PTRVLVDGAFITG 46 (130)
T ss_pred cceeeceEEEEecCCCCCCEEEEEEEEc-CCeEEEeCCCcCC
Confidence 3467899999999999999999999986 558888877 444
No 440
>KOG3883|consensus
Probab=51.41 E-value=55 Score=28.57 Aligned_cols=92 Identities=21% Similarity=0.159 Sum_probs=49.3
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHH-----HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLAR-----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~-----~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+-+|+-+||-|..+-..-|--+.|..-. ...+| |+|..||.|+.++ ...+. +-..... +.+.+...
T Consensus 83 q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvp-iVVLaN~rdr~~p-~~vd~--d~A~~Wa-----~rEkvkl~ 153 (198)
T KOG3883|consen 83 QFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVP-IVVLANKRDRAEP-REVDM--DVAQIWA-----KREKVKLW 153 (198)
T ss_pred ccCceEEEEecCCCHHHHHHHHHHHHHHhhcccccccc-EEEEechhhcccc-hhcCH--HHHHHHH-----hhhheeEE
Confidence 4578889998877643333333332111 13356 4445899999764 11110 0111122 22346667
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCCCCCC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR 116 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~ 116 (502)
.+++.... ++.+.+..+...+..|..
T Consensus 154 eVta~dR~----------sL~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 154 EVTAMDRP----------SLYEPFTYLASRLHQPQS 179 (198)
T ss_pred EEEeccch----------hhhhHHHHHHHhccCCcc
Confidence 77887654 666667777666655543
No 441
>KOG0074|consensus
Probab=50.26 E-value=16 Score=31.24 Aligned_cols=77 Identities=23% Similarity=0.293 Sum_probs=43.9
Q ss_pred ccCCEEEEEEECCCC-CCcchHHHH-HHH---HHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 6 AQMDGAILVCSAADG-PMPQTREHI-LLA---RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 6 ~~~D~ailvVda~~g-~~~qt~e~l-~~~---~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
...|..|.|||+++. .+..+-+|+ .++ +...+|..|+ .||-|++.. ...+++.. -+.--+.....+.+-
T Consensus 84 envd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIf-ankQdllta-a~~eeia~----klnl~~lrdRswhIq 157 (185)
T KOG0074|consen 84 ENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIF-ANKQDLLTA-AKVEEIAL----KLNLAGLRDRSWHIQ 157 (185)
T ss_pred hccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeeh-hhhhHHHhh-cchHHHHH----hcchhhhhhceEEee
Confidence 468999999998763 334444444 333 3456788887 799998764 21222211 111112222245677
Q ss_pred Eccccccc
Q psy15224 81 KGSAKLAL 88 (502)
Q Consensus 81 ~iSa~~g~ 88 (502)
..||+++.
T Consensus 158 ~csals~e 165 (185)
T KOG0074|consen 158 ECSALSLE 165 (185)
T ss_pred eCcccccc
Confidence 78888765
No 442
>PF02941 FeThRed_A: Ferredoxin thioredoxin reductase variable alpha chain; InterPro: IPR004207 Ferredoxin thioredoxin reductase is a [4FE-4S] protein which plays an important role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin), regulating enzymes by reduction of specific disulphide groups. It catalyses the light-dependent activation of several photosynthetis enzymes. Ferredoxin thioredoxin reductase is a heterodimer of subunit a and subunit b. Subunit a is the variable subunit, and b is the catalytic chain. This family is the alpha chain.; GO: 0008937 ferredoxin-NAD(P) reductase activity, 0015979 photosynthesis, 0009536 plastid; PDB: 2PUK_B 2PVO_B 2PVG_B 1DJ7_B 2PVD_B 2PU9_B 2PUO_B.
Probab=50.11 E-value=22 Score=26.07 Aligned_cols=23 Identities=22% Similarity=0.622 Sum_probs=13.1
Q ss_pred CCCeEEEecC-----------C---CCCCeEEEEEEe
Q psy15224 451 LDELVRIKDG-----------P---FTDFSGNIEEVN 473 (502)
Q Consensus 451 ~G~~V~I~~G-----------P---f~g~~g~v~~~~ 473 (502)
+||+|||.+- | ++|++|+|..+-
T Consensus 1 vGdrVrV~~sv~Vyh~P~hr~~~fDl~G~EGev~~~v 37 (67)
T PF02941_consen 1 VGDRVRVKASVVVYHHPEHRNPPFDLKGMEGEVKQIV 37 (67)
T ss_dssp TT-EEEE-S--EES--TTSTTS-EE-TT-EEEEEEE-
T ss_pred CCCeEEEeeeEEEEeCCcccCCCccccCCEEEEEEEE
Confidence 4778877642 2 799999998765
No 443
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=49.70 E-value=53 Score=32.60 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=35.5
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
...|-.+||+||..|-.... +........++.. +| +||+|....-. .+.+.+..++ .|+.+++
T Consensus 231 ~~p~~~~LVl~a~~g~~~~~-~a~~f~~~~~~~g-iI-lTKlD~t~~~G-------~~l~~~~~~~-----~Pi~~v~ 293 (318)
T PRK10416 231 DAPHEVLLVLDATTGQNALS-QAKAFHEAVGLTG-II-LTKLDGTAKGG-------VVFAIADELG-----IPIKFIG 293 (318)
T ss_pred CCCceEEEEEECCCChHHHH-HHHHHHhhCCCCE-EE-EECCCCCCCcc-------HHHHHHHHHC-----CCEEEEe
Confidence 34678899999997643222 2222233455553 44 79999765311 1222333333 5788887
No 444
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=49.60 E-value=35 Score=30.13 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=25.4
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~ 52 (502)
..|.++||+|+..+.. .-..+..+....++.. ++ +||+|....
T Consensus 112 ~~~~~~lVv~~~~~~~-~~~~~~~~~~~~~~~~-vi-ltk~D~~~~ 154 (173)
T cd03115 112 KPDEVLLVVDAMTGQD-AVNQAKAFNEALGITG-VI-LTKLDGDAR 154 (173)
T ss_pred CCCeEEEEEECCCChH-HHHHHHHHHhhCCCCE-EE-EECCcCCCC
Confidence 4788899999864422 1223334444566543 33 699998664
No 445
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=48.96 E-value=29 Score=33.42 Aligned_cols=50 Identities=24% Similarity=0.366 Sum_probs=29.5
Q ss_pred cCCEEEEEEECCCCCC--cc---hHHHHHH--------HHHh--CCCeEEEEEEcCCCCCh-HHHHH
Q psy15224 7 QMDGAILVCSAADGPM--PQ---TREHILL--------ARQV--GVPYIVVFLNKADMVDD-EELLE 57 (502)
Q Consensus 7 ~~D~ailvVda~~g~~--~q---t~e~l~~--------~~~~--~i~~iiv~iNK~D~~~~-~~~~~ 57 (502)
-.|++|++||+.+=.. ++ ...+... ...+ .+|.-++ +||||++.- .+.+.
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv-~Tk~D~l~GF~ef~~ 90 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVV-FTKCDLLPGFDEFFS 90 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEee-eECCCcccCHHHHHH
Confidence 3689999999885222 11 1222222 2223 4686666 999999874 34443
No 446
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=47.05 E-value=22 Score=35.63 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=27.3
Q ss_pred ccCCEEEEEEECCCC-----------CCcchHHHHHHHH----HhCCCeEEEEEEcCCCCC
Q psy15224 6 AQMDGAILVCSAADG-----------PMPQTREHILLAR----QVGVPYIVVFLNKADMVD 51 (502)
Q Consensus 6 ~~~D~ailvVda~~g-----------~~~qt~e~l~~~~----~~~i~~iiv~iNK~D~~~ 51 (502)
..+|++++|||.++- -...+.+.+..+. ..+.|.+++ .||.|+..
T Consensus 206 ~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~-~NK~D~~~ 265 (342)
T smart00275 206 DNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILF-LNKIDLFE 265 (342)
T ss_pred CCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEE-EecHHhHH
Confidence 468999999998862 1122333333222 245675555 99999753
No 447
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=46.96 E-value=1.2e+02 Score=30.62 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=25.3
Q ss_pred EEEEeCce-EecccCCeEEEEeCCeEEEEEEEe
Q psy15224 270 ITVRLINP-IAMEEGLRFAIREGVQQFIQDNLL 301 (502)
Q Consensus 270 v~~~~~~p-i~~~~~~r~ilr~~~~~ig~G~i~ 301 (502)
+++.|+.| -.+-+|+-.+|=+++..+|+|.|.
T Consensus 327 ~~v~f~~p~~av~pGQ~~v~Y~~~~vlGgg~I~ 359 (360)
T PRK14665 327 LHVQLHEPLTAIAEGQAAAFYKDGLLLGGGIIT 359 (360)
T ss_pred EEEEeCCCCcccCCCcEEEEEECCEEEEEEEEc
Confidence 56777877 445678888998888999999984
No 448
>PF02211 NHase_beta: Nitrile hydratase beta subunit; InterPro: IPR024690 Nitrile hydratases (EC:4.2.1.84) are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit []. This entry represents the structural domain of nitrile hydratase beta subunit which contains irregular array of helices in the N-terminal extension.; GO: 0018822 nitrile hydratase activity; PDB: 2DXB_H 2DD5_K 2DD4_H 2ZZD_B 2DXC_H 1AHJ_F 2ZPE_B 2ZCF_B 2D0Q_B 2CZ7_B ....
Probab=44.87 E-value=29 Score=32.38 Aligned_cols=50 Identities=16% Similarity=0.295 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCccccCCCCeEEEecCC----------CCCCeEEEEEEe
Q psy15224 424 ISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGP----------FTDFSGNIEEVN 473 (502)
Q Consensus 424 v~~~ei~~~~~~~~~~~~~~~~~~~~~~G~~V~I~~GP----------f~g~~g~v~~~~ 473 (502)
++++++......-+...........|++||+|+|.+-+ ..|..|+|+.+.
T Consensus 110 ~~a~~v~~~l~~G~p~~r~~~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~rg~~G~I~~~~ 169 (222)
T PF02211_consen 110 LPADQVAAALARGDPADRPVDAPPRFAVGDRVRVRNLPPPGHTRLPRYVRGKTGTIERVH 169 (222)
T ss_dssp -HHHHHHHHHHH----EETTSSS-SS-TT-EEEE-----SS--SS-GGGTT-EEEEEEEE
T ss_pred CcHHHHHHHhhcCCCccCCCCCCCCCCCCCEEEECCCCCCCcccccHhhCCCeeEEEEEe
Confidence 34444444443333222222334579999999999765 588899998765
No 449
>KOG1534|consensus
Probab=44.33 E-value=63 Score=29.92 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=16.6
Q ss_pred HHHHhCCCeEEEEEEcCCCCCh
Q psy15224 31 LARQVGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 31 ~~~~~~i~~iiv~iNK~D~~~~ 52 (502)
....+.+|+|=| ++|||+...
T Consensus 159 AMi~lE~P~INv-lsKMDLlk~ 179 (273)
T KOG1534|consen 159 AMISLEVPHINV-LSKMDLLKD 179 (273)
T ss_pred HHHHhcCcchhh-hhHHHHhhh
Confidence 344678999887 999999764
No 450
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=44.29 E-value=66 Score=26.21 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=29.9
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCce
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQV 499 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v 499 (502)
.+++||+|.-++ |+.|+|.+++. +.+.+++ +..+.++++-..|
T Consensus 52 ~Lk~Gd~VvT~g----Gi~G~Vv~i~~--~~v~lei---~~g~~i~~~r~aI 94 (106)
T PRK05585 52 SLAKGDEVVTNG----GIIGKVTKVSE--DFVIIEL---NDDTEIKIQKSAI 94 (106)
T ss_pred hcCCCCEEEECC----CeEEEEEEEeC--CEEEEEE---CCCeEEEEEhHHh
Confidence 589999998555 69999999985 3555554 2336666665544
No 451
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=43.80 E-value=60 Score=30.95 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=32.3
Q ss_pred CCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCC
Q psy15224 8 MDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM 49 (502)
Q Consensus 8 ~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~ 49 (502)
.+.+++|+.+..-....+++.+..+...|++..-+++|++..
T Consensus 160 ~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~ 201 (254)
T cd00550 160 RTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLP 201 (254)
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcc
Confidence 456788887765555677888888999999876666999875
No 452
>PTZ00189 60S ribosomal protein L21; Provisional
Probab=42.93 E-value=63 Score=28.29 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=39.1
Q ss_pred ccCCCCeEEEecCC----------CCCCeEEEEEEeCCCcEEEEEEEecCc--ceeEEeecCceEe
Q psy15224 448 LYQLDELVRIKDGP----------FTDFSGNIEEVNYEKSRVRVSVTIFGR--ATPVELEFNQVEK 501 (502)
Q Consensus 448 ~~~~G~~V~I~~GP----------f~g~~g~v~~~~~~~~rv~v~v~~~g~--~~~v~~~~~~v~~ 501 (502)
.|++||.|.|.--| |.|.+|+|..+..+.--+.|....-|+ ...+.+-.+.|++
T Consensus 33 ~yk~GD~VdIk~d~svqkGMPhk~YHGkTG~V~nv~~~A~gViV~k~vg~ki~~Kri~vr~EHlk~ 98 (160)
T PTZ00189 33 TFKVGDYVDIVVDSAVHKGMPYKYYHGRTGRVFNVTPRAVGVIVNKRVRGRIVRKRIHVRIEHVRK 98 (160)
T ss_pred HccCCCEEEEEecCCeecCCCcccccCCCeEEEeecCeEEEEEEEEEECCEEeeeEEecCHhHcCC
Confidence 48899999887544 789999999888654334566677787 6666666666543
No 453
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=42.75 E-value=1.3e+02 Score=27.76 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=54.3
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHH-HhC---CCeEEEEEEcCCCCCh---HHHHHHHH-HHHHHHHhhcCCCCCCC
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLAR-QVG---VPYIVVFLNKADMVDD---EELLELVE-IEIRELLNKYEFPGNDI 77 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~-~~~---i~~iiv~iNK~D~~~~---~~~~~~i~-~~i~~~l~~~~~~~~~~ 77 (502)
...|++|||+++. -++..++..+..+. ..| .++.+|++|..|.... ++.++.-. ..+..+++.++-
T Consensus 82 ~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~----- 155 (212)
T PF04548_consen 82 PGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG----- 155 (212)
T ss_dssp T-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT-----
T ss_pred CCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC-----
Confidence 4578999999987 67777777776555 345 3567777899987664 22333222 346677776653
Q ss_pred eEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 78 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 78 ~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
.++..+..+.. .|.....+.+||+.+...
T Consensus 156 R~~~f~n~~~~----~~~~~~qv~~Ll~~ie~m 184 (212)
T PF04548_consen 156 RYHVFNNKTKD----KEKDESQVSELLEKIEEM 184 (212)
T ss_dssp CEEECCTTHHH----HHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccccc----hhhhHHHHHHHHHHHHHH
Confidence 24445544110 000012567777777653
No 454
>PRK14974 cell division protein FtsY; Provisional
Probab=42.75 E-value=70 Score=32.00 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=26.7
Q ss_pred ccCCEEEEEEECCCCCCcchHHHH-HHHHHhCCCeEEEEEEcCCCCCh
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHI-LLARQVGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l-~~~~~~~i~~iiv~iNK~D~~~~ 52 (502)
...|..+||+||..|- ...+.+ ......++..+ + +||+|....
T Consensus 251 ~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~gi-I-lTKlD~~~~ 294 (336)
T PRK14974 251 TKPDLVIFVGDALAGN--DAVEQAREFNEAVGIDGV-I-LTKVDADAK 294 (336)
T ss_pred hCCceEEEeeccccch--hHHHHHHHHHhcCCCCEE-E-EeeecCCCC
Confidence 3578899999997652 122222 22335677654 4 699998664
No 455
>PRK14643 hypothetical protein; Provisional
Probab=42.65 E-value=57 Score=28.89 Aligned_cols=50 Identities=20% Similarity=0.484 Sum_probs=34.5
Q ss_pred CCCeEEEe-cCCCCC---CeEEEEEEeCCCcEEEEEEEec--CcceeEEeecCceEeC
Q psy15224 451 LDELVRIK-DGPFTD---FSGNIEEVNYEKSRVRVSVTIF--GRATPVELEFNQVEKI 502 (502)
Q Consensus 451 ~G~~V~I~-~GPf~g---~~g~v~~~~~~~~rv~v~v~~~--g~~~~v~~~~~~v~~~ 502 (502)
.|..|+|. ..|+.| ++|.+..++.+ .+.+.+... ++...++++.++|+++
T Consensus 103 ~G~~V~V~l~~~~~g~k~~~G~L~~~~~~--~~~l~l~~~~~~~~~~~~ip~~~I~ka 158 (164)
T PRK14643 103 LNQWVYVQLNNEIKKVKEFEGYVTKYNVN--TNTFRFTFFIKGQKKKLDVKYEQIKFI 158 (164)
T ss_pred cCCeEEEEEecccCCceEEEEEEEEEeCC--cEEEEEEeeccCcCcEEEEeHHHhhhe
Confidence 58999886 466554 78999999854 355554332 3456688999988763
No 456
>KOG0091|consensus
Probab=42.24 E-value=1.7e+02 Score=26.02 Aligned_cols=71 Identities=18% Similarity=0.220 Sum_probs=42.7
Q ss_pred CCEEEEEEECCCCCCcchHHHHH-----HHHHhC---CCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 8 MDGAILVCSAADGPMPQTREHIL-----LARQVG---VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 8 ~D~ailvVda~~g~~~qt~e~l~-----~~~~~~---i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+=.++||-|.+.- ..-||+. .+...+ .+.+.+|-.|.|+....+ -..++.+.+.+..|+ .+
T Consensus 82 svgvllvyditnr---~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq---Vt~EEaEklAa~hgM-----~F 150 (213)
T KOG0091|consen 82 SVGVLLVYDITNR---ESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ---VTAEEAEKLAASHGM-----AF 150 (213)
T ss_pred ccceEEEEeccch---hhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcc---ccHHHHHHHHHhcCc-----eE
Confidence 4467888887752 2344432 222333 345666689999975311 111345566777776 48
Q ss_pred EEcccccccc
Q psy15224 80 IKGSAKLALE 89 (502)
Q Consensus 80 i~iSa~~g~~ 89 (502)
+-.||++|.|
T Consensus 151 VETSak~g~N 160 (213)
T KOG0091|consen 151 VETSAKNGCN 160 (213)
T ss_pred EEecccCCCc
Confidence 9999999883
No 457
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=41.66 E-value=51 Score=29.75 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=32.0
Q ss_pred eeecCCEEEEeecCCCeeEEEEEEEEc-ceecceeecCCeEEE
Q psy15224 147 IVRVGEELEIIGIKDTVKTTCTGVEMF-RKLLDQGQAGDNIGL 188 (502)
Q Consensus 147 ~l~~gd~v~i~p~~~~~~~~V~~i~~~-~~~v~~a~aG~~v~l 188 (502)
+|++||.+.+ .+..+.|+||+.. ...++.|.+.|+-++
T Consensus 74 ~l~vGDei~v----d~e~veITSIE~~~gkRV~~A~veeIeTV 112 (201)
T COG1326 74 TLKVGDEIEV----DGEEVEITSIELGGGKRVKSAKVEEIETV 112 (201)
T ss_pred eEecCCEEEE----cCCEEEEEEEeeCCCccccccccceeeeE
Confidence 5889999987 3456999999998 568999999998888
No 458
>KOG3887|consensus
Probab=41.38 E-value=1.3e+02 Score=28.52 Aligned_cols=79 Identities=20% Similarity=0.227 Sum_probs=48.9
Q ss_pred cCCEEEEEEECCCCCC-cchHHHHHHHHHhCCC---eEEEEEEcCCCCChHHHH---HHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 7 QMDGAILVCSAADGPM-PQTREHILLARQVGVP---YIVVFLNKADMVDDEELL---ELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 7 ~~D~ailvVda~~g~~-~qt~e~l~~~~~~~i~---~iiv~iNK~D~~~~~~~~---~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.+-+.++||||.+... +-++-|+..+++..+. .+=|.|-|.|-...+.+. ..+.....+-++..|...-.+.+
T Consensus 101 ~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf 180 (347)
T KOG3887|consen 101 GVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSF 180 (347)
T ss_pred ccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEE
Confidence 4667899999987543 6678888888887653 244459999987652221 22333344455666664334455
Q ss_pred EEcccc
Q psy15224 80 IKGSAK 85 (502)
Q Consensus 80 i~iSa~ 85 (502)
...|-.
T Consensus 181 ~LTSIy 186 (347)
T KOG3887|consen 181 YLTSIY 186 (347)
T ss_pred EEeeec
Confidence 555654
No 459
>KOG0079|consensus
Probab=41.31 E-value=1e+02 Score=26.70 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=48.6
Q ss_pred cCCEEEEEEECCCCCC-cchHHHHHHHHH--hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 7 QMDGAILVCSAADGPM-PQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 7 ~~D~ailvVda~~g~~-~qt~e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
..+.+++|-|.+.|.. ..-++.|..++. -.+|.++| -||.|..+.... ..++...+....+ +.++-.|
T Consensus 80 gthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLV-GNK~d~~~RrvV---~t~dAr~~A~~mg-----ie~FETS 150 (198)
T KOG0079|consen 80 GTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLV-GNKNDDPERRVV---DTEDARAFALQMG-----IELFETS 150 (198)
T ss_pred CCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceec-ccCCCCccceee---ehHHHHHHHHhcC-----chheehh
Confidence 4678999999987753 445556665553 24677776 899998764111 1123455555444 4588899
Q ss_pred ccccccCC
Q psy15224 84 AKLALEGD 91 (502)
Q Consensus 84 a~~g~~~~ 91 (502)
|+.+.|..
T Consensus 151 aKe~~NvE 158 (198)
T KOG0079|consen 151 AKENENVE 158 (198)
T ss_pred hhhcccch
Confidence 99887543
No 460
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=41.23 E-value=66 Score=22.55 Aligned_cols=51 Identities=12% Similarity=0.058 Sum_probs=34.7
Q ss_pred cCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCccee--EEeecCce
Q psy15224 449 YQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATP--VELEFNQV 499 (502)
Q Consensus 449 ~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~--v~~~~~~v 499 (502)
|++|++|.+..+--.-++++|.++...++...-.|...|-+.. =-++.++|
T Consensus 1 ~~vG~~v~~~~~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~~~i 53 (55)
T PF11717_consen 1 FEVGEKVLCKYKDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPESRI 53 (55)
T ss_dssp --TTEEEEEEETTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEETTTE
T ss_pred CCcCCEEEEEECCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecHHHc
Confidence 5689999999966677889999998876666666666554433 33555554
No 461
>PF04319 NifZ: NifZ domain; InterPro: IPR007415 NifZ is a short protein is found in the nif (nitrogen fixation) operon. It is required for the maturation of the nitrogenase MoFe protein. In the absence of NifZ, only one of the two P-clusters of the MoFe protein is matured to the ultimate [8Fe-7S] structure. The other P-cluster site in the protein contains a [4Fe-4S] cluster pair, suggesting that NifZ is specifically required for the formation of the second P-cluster [, , ].; GO: 0009399 nitrogen fixation
Probab=40.43 E-value=1.1e+02 Score=23.22 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=33.2
Q ss_pred ccCCCCeEEEe-----cCCC-----------CCCeEEEEEEeCCCcEEE-EEEEecCcceeEEeecCceE
Q psy15224 448 LYQLDELVRIK-----DGPF-----------TDFSGNIEEVNYEKSRVR-VSVTIFGRATPVELEFNQVE 500 (502)
Q Consensus 448 ~~~~G~~V~I~-----~GPf-----------~g~~g~v~~~~~~~~rv~-v~v~~~g~~~~v~~~~~~v~ 500 (502)
.|+.||+|+.. +|-| +|-.|.|..+-..-..-. -.+++.++...|-+=.+.|+
T Consensus 4 ~f~~G~~V~a~~~irNDGt~Pg~~~g~lLv~~G~~G~V~~iG~flq~~~IY~V~F~~~~~vVGcre~EL~ 73 (75)
T PF04319_consen 4 RFEWGDKVRARKDIRNDGTFPGKEIGELLVRKGDVGYVVSIGTFLQDFYIYLVHFLERGRVVGCREEELE 73 (75)
T ss_pred ccCCCCEEEEEEEeEcCCCCCCCCCCCEEEcCCCcEEEEEeeEEcceeEEEEEEEcCCCCEEeEcHHHcc
Confidence 58899999876 6776 556677776654443323 35666666665655444443
No 462
>CHL00175 minD septum-site determining protein; Validated
Probab=40.32 E-value=29 Score=33.56 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=33.2
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 50 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~ 50 (502)
++..||.+++|+++...-...+...+..+...+.+.+-+++|+++..
T Consensus 145 ~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~ 191 (281)
T CHL00175 145 AIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPD 191 (281)
T ss_pred HHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChh
Confidence 45678999998887644345556667777777776666669999854
No 463
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=40.28 E-value=1.3e+02 Score=21.24 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=35.4
Q ss_pred ccccCCCCeEEEe-cCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCce
Q psy15224 446 KILYQLDELVRIK-DGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQV 499 (502)
Q Consensus 446 ~~~~~~G~~V~I~-~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v 499 (502)
+..|..|+.|++. -|-=.=++|+|..+|..+.+.+|..+- | +..++...+|
T Consensus 3 ~~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~D-G--tel~lke~di 54 (55)
T PF09465_consen 3 SRKFAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYED-G--TELELKENDI 54 (55)
T ss_dssp SSSS-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETT-S---EEEEECCCE
T ss_pred cccccCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcC-C--CEEEeccccc
Confidence 3568899999977 444445689999999999999998776 3 3466666555
No 464
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=38.57 E-value=28 Score=33.00 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=33.3
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 50 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~ 50 (502)
++..||.+++++.+...-...+.+.+..+...+...+.+++|+++..
T Consensus 130 ~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~~ 176 (261)
T TIGR01968 130 AVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRPE 176 (261)
T ss_pred HHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCch
Confidence 45678999999988754445566677777777765455569999853
No 465
>PF11424 DUF3195: Protein of unknown function (DUF3195); InterPro: IPR021540 This archaeal family of proteins has no known function. ; PDB: 1RKI_B.
Probab=38.31 E-value=27 Score=26.63 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=28.7
Q ss_pred EEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEE
Q psy15224 331 YVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEME 395 (502)
Q Consensus 331 Yvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~ 395 (502)
..++|.|++|..+++.|-. .++ |.- ....-+|+-||-+||++.
T Consensus 2 iii~TipkKE~~VARDLCD---------ClY--yyD-----------~~V~C~~i~pg~vYv~t~ 44 (89)
T PF11424_consen 2 IIITTIPKKEAIVARDLCD---------CLY--YYD-----------QSVMCEPISPGRVYVYTS 44 (89)
T ss_dssp EEEEE-CCGHHHHHCHHHH---------HHC--CC------------TT-EEEEEETTEEEEEE-
T ss_pred EEEEecCcchhhhHHHhhh---------hhe--ecC-----------ceEEEEEccCcEEEEEEe
Confidence 5789999999999988874 221 110 012446899999999986
No 466
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=37.64 E-value=1.8e+02 Score=24.28 Aligned_cols=77 Identities=16% Similarity=0.043 Sum_probs=53.9
Q ss_pred CEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh---HHHHHHHHHHHHHHHhhcCCCCCCCeEEEcccc
Q psy15224 9 DGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD---EELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 85 (502)
Q Consensus 9 D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~---~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~ 85 (502)
++-++=|.+.- .-+..|+..+...|..-++|+--.-+-+.. +...+...+.+++.|+.+|+.++.+.+..+|+-
T Consensus 28 ~vriIrvpC~G---rv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~~ 104 (124)
T PF02662_consen 28 NVRIIRVPCSG---RVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISAP 104 (124)
T ss_pred CeEEEEccCCC---ccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCcc
Confidence 34444455442 335677777888899987775556666664 345566667788899999998888888889986
Q ss_pred ccc
Q psy15224 86 LAL 88 (502)
Q Consensus 86 ~g~ 88 (502)
.+.
T Consensus 105 ~~~ 107 (124)
T PF02662_consen 105 EGK 107 (124)
T ss_pred cHH
Confidence 654
No 467
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=37.55 E-value=2.1e+02 Score=28.75 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=24.4
Q ss_pred EEEEeCceE-ecccCCeEEEEeCCeEEEEEEE
Q psy15224 270 ITVRLINPI-AMEEGLRFAIREGVQQFIQDNL 300 (502)
Q Consensus 270 v~~~~~~pi-~~~~~~r~ilr~~~~~ig~G~i 300 (502)
+++.|++|. .+-+|+-.+|=++++.+|+|.|
T Consensus 314 ~~v~~~~p~~~v~pGQ~~v~Y~~~~~lggg~I 345 (346)
T PRK00143 314 VEVEFDEPQRAVTPGQAAVFYDGDRVLGGGII 345 (346)
T ss_pred EEEEeCCCccccCCCcEEEEEECCEEEEEEEE
Confidence 566777764 4567888899888899999987
No 468
>KOG2743|consensus
Probab=36.34 E-value=79 Score=30.93 Aligned_cols=51 Identities=24% Similarity=0.320 Sum_probs=28.3
Q ss_pred CCEEEEEEECCCCCCcch---------HHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHH
Q psy15224 8 MDGAILVCSAADGPMPQT---------REHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIR 64 (502)
Q Consensus 8 ~D~ailvVda~~g~~~qt---------~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~ 64 (502)
.|.++-||||.+....-+ +.|-+++.+ .. |+ +||.|++.. +....+.+.++
T Consensus 178 LDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~A---D~-II-~NKtDli~~-e~~~~l~q~I~ 237 (391)
T KOG2743|consen 178 LDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALA---DR-II-MNKTDLVSE-EEVKKLRQRIR 237 (391)
T ss_pred eeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhh---he-ee-eccccccCH-HHHHHHHHHHH
Confidence 689999999987432111 112223332 23 44 799999986 33344444443
No 469
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=35.67 E-value=68 Score=31.02 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=27.1
Q ss_pred cCCEEEEEEECCCCCCcchHHH-HHHHHHhCCCeEEEEEEcCCCCCh
Q psy15224 7 QMDGAILVCSAADGPMPQTREH-ILLARQVGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~-l~~~~~~~i~~iiv~iNK~D~~~~ 52 (502)
.+|..+||+||..|- .+.+. ....+..++..+ + +||+|....
T Consensus 190 ~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~~~g~-I-lTKlDe~~~ 232 (272)
T TIGR00064 190 APDEVLLVLDATTGQ--NALEQAKVFNEAVGLTGI-I-LTKLDGTAK 232 (272)
T ss_pred CCceEEEEEECCCCH--HHHHHHHHHHhhCCCCEE-E-EEccCCCCC
Confidence 489999999997542 22222 333445666644 3 799998664
No 470
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=35.59 E-value=43 Score=29.94 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=35.3
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCC--CeEEEEEEcCCCCCh
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGV--PYIVVFLNKADMVDD 52 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i--~~iiv~iNK~D~~~~ 52 (502)
.+..+|.+|++++++.--...+...+..++.++. +.+-+++||.+.-+.
T Consensus 113 ~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~ 163 (195)
T PF01656_consen 113 ALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNE 163 (195)
T ss_dssp HHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCH
T ss_pred HHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCcc
Confidence 4567999999999875334556667777887773 355666999998764
No 471
>KOG0447|consensus
Probab=35.58 E-value=78 Score=33.48 Aligned_cols=45 Identities=24% Similarity=0.359 Sum_probs=28.1
Q ss_pred cccCCEEEEEEECCCCCCcchH----HHHHHHHHhCCCeEEEEEEcCCCCCh
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR----EHILLARQVGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~----e~l~~~~~~~i~~iiv~iNK~D~~~~ 52 (502)
+++.+++||||- +|-....+ .....+.-.|...|.| +||.|+...
T Consensus 446 M~NPNAIILCIQ--DGSVDAERSnVTDLVsq~DP~GrRTIfV-LTKVDlAEk 494 (980)
T KOG0447|consen 446 MQNPNAIILCIQ--DGSVDAERSIVTDLVSQMDPHGRRTIFV-LTKVDLAEK 494 (980)
T ss_pred hcCCCeEEEEec--cCCcchhhhhHHHHHHhcCCCCCeeEEE-Eeecchhhh
Confidence 356788889883 34332222 2344556678776665 999998653
No 472
>PRK14644 hypothetical protein; Provisional
Probab=35.31 E-value=77 Score=27.11 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=36.4
Q ss_pred CCCeEEEe-cCCC---CCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceE
Q psy15224 451 LDELVRIK-DGPF---TDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVE 500 (502)
Q Consensus 451 ~G~~V~I~-~GPf---~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~ 500 (502)
.|..|+|. ..|. +-++|.+.+++. +.+++.++.-|+...++++.++|.
T Consensus 84 ~G~~v~V~l~~~~~~~~~~~G~L~~v~~--~~i~l~~~~k~~~~~i~~~~~~i~ 135 (136)
T PRK14644 84 IGEIIDVSLNKEVNKTDFITGELLENNP--ETITLKWNCKGQFRKVEINKENIK 135 (136)
T ss_pred CCCeEEEEEccCcCCeEEEEEEEEEEeC--CEEEEEEecCCcEEEEEECHHHhc
Confidence 57777774 3442 567799999884 478888888899889999888875
No 473
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=34.96 E-value=1.9e+02 Score=29.23 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=24.1
Q ss_pred EEEEeCceE-ecccCCeEEEEeCCeEEEEEEE
Q psy15224 270 ITVRLINPI-AMEEGLRFAIREGVQQFIQDNL 300 (502)
Q Consensus 270 v~~~~~~pi-~~~~~~r~ilr~~~~~ig~G~i 300 (502)
++++|++|. .+-+|+-.+|=++++.+|+|.|
T Consensus 321 ~~v~f~~p~~~v~pGQ~~v~Y~~~~~lggg~I 352 (352)
T TIGR00420 321 IEVIFDEPQAGVTPGQSAVLYKGDICLGGGII 352 (352)
T ss_pred EEEEeCCCCcccCCCcEEEEEECCEEEEeEEC
Confidence 566777774 4557888899888899999986
No 474
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=34.49 E-value=3e+02 Score=28.59 Aligned_cols=70 Identities=19% Similarity=0.386 Sum_probs=40.3
Q ss_pred chHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHHH
Q psy15224 24 QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSL 103 (502)
Q Consensus 24 qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~L 103 (502)
...+.+..++..|.|.+|+ +|-.+=-.. +. ..+.+++. .+ + ++|++|+++..-. .+.+..+
T Consensus 168 AEervI~ELk~igKPFvil-lNs~~P~s~-et-~~L~~eL~---ek--Y---~vpVlpvnc~~l~--------~~DI~~I 228 (492)
T PF09547_consen 168 AEERVIEELKEIGKPFVIL-LNSTKPYSE-ET-QELAEELE---EK--Y---DVPVLPVNCEQLR--------EEDITRI 228 (492)
T ss_pred HHHHHHHHHHHhCCCEEEE-EeCCCCCCH-HH-HHHHHHHH---HH--h---CCcEEEeehHHcC--------HHHHHHH
Confidence 3456788899999997666 898775443 21 22222222 22 2 4789999886532 1245555
Q ss_pred HHHHhhcCC
Q psy15224 104 SKALDTYIP 112 (502)
Q Consensus 104 l~~l~~~~p 112 (502)
|+.+.-.+|
T Consensus 229 l~~vLyEFP 237 (492)
T PF09547_consen 229 LEEVLYEFP 237 (492)
T ss_pred HHHHHhcCC
Confidence 555544344
No 475
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=33.70 E-value=1.7e+02 Score=22.54 Aligned_cols=66 Identities=20% Similarity=0.436 Sum_probs=44.1
Q ss_pred eCCHHHHHHHHHHHhcCCCCCCCccccCCCCeEEEe---cCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCce
Q psy15224 423 PISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIK---DGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQV 499 (502)
Q Consensus 423 ~v~~~ei~~~~~~~~~~~~~~~~~~~~~~G~~V~I~---~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v 499 (502)
.+++++++.+-..+.. .+..+..|+|+ +|-.....|.|.++|...+.+.+.=.. + ....+++++|
T Consensus 22 ~Lde~~leei~~~l~~---------a~~~~~~v~ity~~~g~~~~~~G~I~~id~~~~~l~~~~~~-~--~~~~I~~~~I 89 (92)
T PF08863_consen 22 ELDEQQLEEINEKLSE---------AYQENQPVTITYYEDGYYQSVTGTIHKIDEINRTLKLKDED-G--ETEKIPFDDI 89 (92)
T ss_pred CCcHHHHHHHHHHHHH---------HhcCCCEEEEEEEECCeeEEEEEEEEEEcCCCCEEEEEeCC-C--CEEEEEhhhE
Confidence 4788888888766543 24455556655 788888999999999877666555423 3 3345666655
Q ss_pred E
Q psy15224 500 E 500 (502)
Q Consensus 500 ~ 500 (502)
-
T Consensus 90 ~ 90 (92)
T PF08863_consen 90 I 90 (92)
T ss_pred E
Confidence 4
No 476
>PLN02759 Formate--tetrahydrofolate ligase
Probab=33.44 E-value=1.8e+02 Score=31.45 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHHHH
Q psy15224 25 TREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLS 104 (502)
Q Consensus 25 t~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll 104 (502)
...|++-++.+|+|. ||+||+...-.. +.. +.+.+...+.|. ++++....+.. .|.+..+|-
T Consensus 439 L~~Hi~n~~~fg~pv-VVaiN~F~~Dt~-~Ei----~~v~~~~~~~ga----~~~~~~~~wa~--------GGeGa~eLA 500 (637)
T PLN02759 439 LARHIENTKSYGVNV-VVAINMFATDTE-AEL----EAVRQAALAAGA----FDAVLCTHHAH--------GGKGAVDLG 500 (637)
T ss_pred HHHHHHHHHHcCCCe-EEEecCCCCCCH-HHH----HHHHHHHHHcCC----CcEEEechhhc--------ccHHHHHHH
Confidence 467999999999995 556999987654 222 345556666553 23443333211 134667777
Q ss_pred HHHhhcC
Q psy15224 105 KALDTYI 111 (502)
Q Consensus 105 ~~l~~~~ 111 (502)
+.+.+.+
T Consensus 501 ~~Vv~a~ 507 (637)
T PLN02759 501 EAVQKAC 507 (637)
T ss_pred HHHHHHH
Confidence 7765543
No 477
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=33.14 E-value=2.2e+02 Score=28.66 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=25.0
Q ss_pred EEEEEeCceEe-cccCCeEEEEeCCeEEEEEEE
Q psy15224 269 LITVRLINPIA-MEEGLRFAIREGVQQFIQDNL 300 (502)
Q Consensus 269 ~v~~~~~~pi~-~~~~~r~ilr~~~~~ig~G~i 300 (502)
.+++.|..|.. +-+|+-.+|=+++..+|+|.|
T Consensus 317 ~~~v~~~~p~~~v~pGQ~~v~Y~~~~~lggg~I 349 (349)
T cd01998 317 RLEVIFDEPQRAVAPGQAAVFYDGDRVLGGGII 349 (349)
T ss_pred eEEEEeCCCCcccCCCCEEEEEECCEEEeeEEC
Confidence 35677777654 567899999888899999986
No 478
>PHA02518 ParA-like protein; Provisional
Probab=32.66 E-value=95 Score=28.13 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=27.1
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHh-----CCCeEEEEEEcCCCC
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQV-----GVPYIVVFLNKADMV 50 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~-----~i~~iiv~iNK~D~~ 50 (502)
.++..||.+|+++.++.--...+.+.+..+... +.+.+.++.|+.+..
T Consensus 94 ~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 94 AALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred HHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 356778999998887643223333333333322 456555557776643
No 479
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.49 E-value=73 Score=35.95 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=34.8
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEe
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 501 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~ 501 (502)
.+++||.|+|.+- |..|+|+++++ ++.+.|.+.. +.++++.++|++
T Consensus 636 ~~~~Gd~V~v~~~---~~~g~v~~i~~-~~~~~V~~g~----~k~~v~~~~l~~ 681 (782)
T PRK00409 636 ELKVGDEVKYLSL---GQKGEVLSIPD-DKEAIVQAGI----MKMKVPLSDLEK 681 (782)
T ss_pred CCCCCCEEEEccC---CceEEEEEEcC-CCeEEEEECC----EEEEEeHHHcee
Confidence 4899999999874 88999999974 5566666543 567777777754
No 480
>KOG0393|consensus
Probab=32.35 E-value=1.9e+02 Score=26.54 Aligned_cols=79 Identities=24% Similarity=0.185 Sum_probs=42.4
Q ss_pred cccCCEEEEEEECCCCCC--c-chHHHHHHHHH-hCCCeEEEEEEcCCCCChHHHHHHHH---------HHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPM--P-QTREHILLARQ-VGVPYIVVFLNKADMVDDEELLELVE---------IEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~--~-qt~e~l~~~~~-~~i~~iiv~iNK~D~~~~~~~~~~i~---------~~i~~~l~~~~ 71 (502)
-.++|+.+++.+...-.. . .++.+=++-.. -++|.++| -+|.|+-+.....+.+. ++-..+.+++|
T Consensus 74 Y~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLV-Gtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~ig 152 (198)
T KOG0393|consen 74 YPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILV-GTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIG 152 (198)
T ss_pred CCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEE-eehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhC
Confidence 357899988777554211 0 11111111111 46886666 79999975422211111 22334445555
Q ss_pred CCCCCCeEEEccccccc
Q psy15224 72 FPGNDIPIIKGSAKLAL 88 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~ 88 (502)
. ...+-+||++..
T Consensus 153 a----~~y~EcSa~tq~ 165 (198)
T KOG0393|consen 153 A----VKYLECSALTQK 165 (198)
T ss_pred c----ceeeeehhhhhC
Confidence 4 568889999876
No 481
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=32.24 E-value=93 Score=28.71 Aligned_cols=40 Identities=23% Similarity=0.141 Sum_probs=21.8
Q ss_pred EEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC
Q psy15224 11 AILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 50 (502)
Q Consensus 11 ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~ 50 (502)
+++|+++.-|-..++...+..++..+++..-+++|++|..
T Consensus 136 vilV~~~~~~~i~~~~~~i~~l~~~~~~i~gvIlN~~~~~ 175 (222)
T PRK00090 136 VILVVGVKLGCINHTLLTLEAIRARGLPLAGWVANGIPPE 175 (222)
T ss_pred EEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEEccCCCc
Confidence 4566655444334444555555566666544446777653
No 482
>PRK02749 photosystem I reaction center subunit IV; Provisional
Probab=32.09 E-value=1.2e+02 Score=22.32 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=26.8
Q ss_pred cCCCCeEEEe--cCCCCCCeEEEEEEeCCCcEEEEEEE
Q psy15224 449 YQLDELVRIK--DGPFTDFSGNIEEVNYEKSRVRVSVT 484 (502)
Q Consensus 449 ~~~G~~V~I~--~GPf~g~~g~v~~~~~~~~rv~v~v~ 484 (502)
++.|++|||. +--+-.-.|.|..+|...-+.-|.+.
T Consensus 3 i~rGskVrIlR~ESYWyn~vGtV~svD~sgi~YPV~VR 40 (71)
T PRK02749 3 ISRGDKVRILRPESYWYNEVGTVASVDKSGIKYPVIVR 40 (71)
T ss_pred cccCCEEEEccccceeecCcceEEEEccCCCeeeEEEE
Confidence 5789999998 45578888999999986545444433
No 483
>smart00785 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU PUBMED:15112237.
Probab=31.84 E-value=2.4e+02 Score=21.76 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=42.6
Q ss_pred HHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCC------Ce-EEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc
Q psy15224 102 SLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG------RG-TVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR 174 (502)
Q Consensus 102 ~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~------~G-~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~ 174 (502)
.|+..|...-+.+-.--+....+.++++..++. .+ ..++|.|....++.++.|-|.+ --...|.+|....
T Consensus 4 nL~R~i~~~k~~~l~WR~~rpY~lad~~e~~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG---~GDfqi~~I~~~~ 80 (83)
T smart00785 4 NLLRFLSVMKPRPLSWRDQHPYMLADRVEDITDEEDPKVDRTLVVYGYVRGTGLNANQLVHIPG---LGDFQISKIEALP 80 (83)
T ss_pred HHHHHHHhccCCCCcccCCCCeEEEEEeEecCCCCCCccCcEEEEEEEEcCCCCCCCCEEEeCC---cCCeEeeEEeecC
Confidence 455555554443333334444556666554321 22 4689999999999999998753 2356777776543
No 484
>CHL00125 psaE photosystem I subunit IV; Reviewed
Probab=31.72 E-value=98 Score=22.26 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=25.7
Q ss_pred cCCCCeEEEe--cCCCCCCeEEEEEEeCCCcEEEEEE
Q psy15224 449 YQLDELVRIK--DGPFTDFSGNIEEVNYEKSRVRVSV 483 (502)
Q Consensus 449 ~~~G~~V~I~--~GPf~g~~g~v~~~~~~~~rv~v~v 483 (502)
++.|++|||. +--+-.-.|.|..+|..+-+.-|.+
T Consensus 2 i~rGskVrIlR~ESYWyn~vGtV~svd~~gi~YPV~V 38 (64)
T CHL00125 2 VKRGSKVRILRKESYWYNEIGTVATVDQSGIRYPVLV 38 (64)
T ss_pred cccCCEEEEccccceeecCcceEEEEcCCCCCccEEE
Confidence 4689999998 4557788899999998654543333
No 485
>KOG0097|consensus
Probab=31.64 E-value=1.5e+02 Score=25.29 Aligned_cols=71 Identities=27% Similarity=0.357 Sum_probs=41.9
Q ss_pred cCCEEEEEEECCCCCCcchHHHHH----HHHHhCCC--eEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 7 QMDGAILVCSAADGPMPQTREHIL----LARQVGVP--YIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~----~~~~~~i~--~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.|-.+++|-|...- -|..|+. -++.+--| .|++.-||.|+.+. +-.|+ +...+.+.-| .-|
T Consensus 83 gaagalmvyditrr---stynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~ye----eak~faeeng-----l~f 150 (215)
T KOG0097|consen 83 GAAGALMVYDITRR---STYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYE----EAKEFAEENG-----LMF 150 (215)
T ss_pred cccceeEEEEehhh---hhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHH----HHHHHHhhcC-----eEE
Confidence 35567888887653 2445542 23444434 34444799999764 22233 3344555444 358
Q ss_pred EEcccccccc
Q psy15224 80 IKGSAKLALE 89 (502)
Q Consensus 80 i~iSa~~g~~ 89 (502)
+..||++|.|
T Consensus 151 le~saktg~n 160 (215)
T KOG0097|consen 151 LEASAKTGQN 160 (215)
T ss_pred EEecccccCc
Confidence 8999999984
No 486
>CHL00084 rpl19 ribosomal protein L19
Probab=31.45 E-value=1.7e+02 Score=24.31 Aligned_cols=49 Identities=10% Similarity=0.198 Sum_probs=31.5
Q ss_pred ccCCCCeEEE----ecCC---CCCCeEEEEEEeCCCcE--EEEEEEecCcceeEEeec
Q psy15224 448 LYQLDELVRI----KDGP---FTDFSGNIEEVNYEKSR--VRVSVTIFGRATPVELEF 496 (502)
Q Consensus 448 ~~~~G~~V~I----~~GP---f~g~~g~v~~~~~~~~r--v~v~v~~~g~~~~v~~~~ 496 (502)
.|.+||.|+| .+|. .+-|+|.++...+..-. ++|.=-+.|--++-.++.
T Consensus 22 ~f~~GDtV~V~~~i~eg~k~R~q~F~GvvI~~r~~G~~~tftvRki~~gvGVEr~fpl 79 (117)
T CHL00084 22 KIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTTITVRKVFQGIGVERVFLL 79 (117)
T ss_pred ccCCCCEEEEEEEEecCCeeEeceEEEEEEEEeCCCCCeeEEEEEeccCccEEEEEec
Confidence 6999999987 4676 66799999988754433 344333444444444443
No 487
>PLN00045 photosystem I reaction center subunit IV; Provisional
Probab=31.17 E-value=1.2e+02 Score=23.81 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=30.4
Q ss_pred CCccccCCCCeEEEe--cCCCCCCeEEEEEEeCC-CcE--EEEEEE
Q psy15224 444 RPKILYQLDELVRIK--DGPFTDFSGNIEEVNYE-KSR--VRVSVT 484 (502)
Q Consensus 444 ~~~~~~~~G~~V~I~--~GPf~g~~g~v~~~~~~-~~r--v~v~v~ 484 (502)
.+..+++.|++|+|. +--|-.-.|.|..+|.. +-+ +.|.++
T Consensus 35 pp~ig~~RGskVrIlR~ESYWyn~vGtVvsVDq~~girYPVvVRF~ 80 (101)
T PLN00045 35 PPPIGPKRGSKVKILRPESYWFNDVGKVVAVDQDPGVRYPVVVRFE 80 (101)
T ss_pred CCCcccCCCCEEEEccccceeecCcceEEEEeCCCCcccceEEEee
Confidence 345678999999998 55688888999999986 334 444444
No 488
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=30.84 E-value=84 Score=30.03 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=27.0
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHH----HhCCCeEEEEEEcCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLAR----QVGVPYIVVFLNKADM 49 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~----~~~i~~iiv~iNK~D~ 49 (502)
++..||.+|+++.+..--..-+.+.+..+. ..+++..-+++|++|.
T Consensus 135 al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 135 PLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred hhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 356799999999876432222333333332 2456644455899884
No 489
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=30.70 E-value=2.6e+02 Score=28.96 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=46.4
Q ss_pred EEEEEECCCCCC---------------cchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q psy15224 11 AILVCSAADGPM---------------PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 75 (502)
Q Consensus 11 ailvVda~~g~~---------------~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 75 (502)
|+.+||.+.|-. .-.+|.+.+++..++.=+|+ |-=+|+.+. +..+.+.+.+...++.-. .
T Consensus 287 ALtvIDVNsG~~~~~~~~eet~~~~NleAa~EIaRQlRLRnigGiIv-IDFIdM~~~-~~~~~v~~~l~~~~~~D~---~ 361 (414)
T TIGR00757 287 ALTTIDVNSGRFTGGGNLEETALNTNLEAAKEIARQLRLRNLGGIII-IDFIDMKSE-KNQRRVLERLKEALRRDR---A 361 (414)
T ss_pred cEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCeEE-EECCCCCCH-HHHHHHHHHHHHHHhcCC---C
Confidence 677889888743 22356778888899987777 777777654 333455566666665432 2
Q ss_pred CCeEEEcccc
Q psy15224 76 DIPIIKGSAK 85 (502)
Q Consensus 76 ~~~ii~iSa~ 85 (502)
...++++|.+
T Consensus 362 k~~v~~~T~l 371 (414)
T TIGR00757 362 RIQISGISEF 371 (414)
T ss_pred CcEEcccCCC
Confidence 4567788875
No 490
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.69 E-value=2.2e+02 Score=23.54 Aligned_cols=62 Identities=27% Similarity=0.269 Sum_probs=40.1
Q ss_pred cccCCEEEEEEECCCCCC----cch-HHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPM----PQT-REHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~----~qt-~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~ 71 (502)
+..||+||+|=++--|.. ..| +-+..+.+..|+|.+=+ |--.. ++.....++++.+||+.+.
T Consensus 82 IEeadAAIi~~~~p~~FGCiGC~RTNEl~~ylvR~k~iPiLel---kYP~s--~Eea~~~VnkI~~FL~sLe 148 (152)
T COG4050 82 IEEADAAIIVEEAPFGFGCIGCARTNELCVYLVRRKGIPILEL---KYPRS--EEEAIDFVNKIANFLKSLE 148 (152)
T ss_pred hhhcceeeEeccCCcccceecccccchHHHHHhhhcCCceEEE---eCCCc--HHHHHHHHHHHHHHHHhhh
Confidence 356899999988875433 334 44568889999995433 22222 3444566788888988653
No 491
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=30.00 E-value=87 Score=35.26 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=34.1
Q ss_pred CCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEe
Q psy15224 450 QLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 501 (502)
Q Consensus 450 ~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~ 501 (502)
++||.|+|.+ -|..|+|.++++ ++.+.|.+.. +.+.++.++|++
T Consensus 626 ~~Gd~V~v~~---~~~~g~v~~i~~-~~~~~V~~g~----~k~~v~~~~l~~ 669 (771)
T TIGR01069 626 KIGDKVRIRY---FGQKGKIVQILG-GNKWNVTVGG----MRMKVHGSELEK 669 (771)
T ss_pred CCCCEEEEcc---CCceEEEEEEcC-CCeEEEEECC----EEEEEeHHHcee
Confidence 8999999966 489999999974 5678877653 556777777654
No 492
>COG4873 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.87 E-value=1.1e+02 Score=22.37 Aligned_cols=42 Identities=31% Similarity=0.510 Sum_probs=31.0
Q ss_pred cCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeec
Q psy15224 449 YQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEF 496 (502)
Q Consensus 449 ~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~ 496 (502)
-.+|+.++..+| +.|.|.+++. +.+.|.+.++..-..++++.
T Consensus 24 a~vgniief~dg----l~g~vek~ne--nsvivdlt~menf~dl~l~e 65 (81)
T COG4873 24 AKVGNIIEFKDG----LTGVVEKVNE--NSVIVDLTIMENFRDLELDE 65 (81)
T ss_pred eeccceEEEccc----ceeeeeeecC--CcEEEEEEeeccccccCCcc
Confidence 468999998875 8999999994 47888888876544444443
No 493
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=29.66 E-value=82 Score=32.65 Aligned_cols=44 Identities=25% Similarity=0.219 Sum_probs=26.9
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHH-HHhCCCeEEEEEEcCCCCCh
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLA-RQVGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~-~~~~i~~iiv~iNK~D~~~~ 52 (502)
+...|-++||+||..|-.. ...+... ...++.. ++ +||+|....
T Consensus 210 ~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g-~I-lTKlD~~ar 254 (429)
T TIGR01425 210 AIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGS-VI-ITKLDGHAK 254 (429)
T ss_pred hcCCcEEEEEeccccChhH--HHHHHHHHhccCCcE-EE-EECccCCCC
Confidence 4467889999999876332 2222222 2345553 44 799998653
No 494
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=28.75 E-value=79 Score=28.87 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=29.6
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~ 52 (502)
..+-++||+||+.+.. ...+........++..+| +||+|....
T Consensus 113 ~~~~~~LVlsa~~~~~-~~~~~~~~~~~~~~~~lI--lTKlDet~~ 155 (196)
T PF00448_consen 113 NPDEVHLVLSATMGQE-DLEQALAFYEAFGIDGLI--LTKLDETAR 155 (196)
T ss_dssp SSSEEEEEEEGGGGGH-HHHHHHHHHHHSSTCEEE--EESTTSSST
T ss_pred CCccceEEEecccChH-HHHHHHHHhhcccCceEE--EEeecCCCC
Confidence 4677899999987643 223445555667888665 599998765
No 495
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=28.74 E-value=2.2e+02 Score=30.08 Aligned_cols=70 Identities=23% Similarity=0.213 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccccccCCCCCCC-cccHH
Q psy15224 23 PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLG-EQSIL 101 (502)
Q Consensus 23 ~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~-~~~i~ 101 (502)
.....|++-++.+|+|. ||+||+...-.. +.. +.+.++.++.|. ++..... |.. |.+..
T Consensus 343 ~NL~~Hi~n~~~fg~p~-VVaiN~F~~Dt~-~Ei----~~v~~~~~~~g~-----~~~~~~~---------~~~GG~Ga~ 402 (524)
T cd00477 343 ANLRKHIENIKKFGVPV-VVAINKFSTDTD-AEL----ALVRKLAEEAGA-----FVAVSEH---------WAEGGKGAV 402 (524)
T ss_pred HHHHHHHHHHHHcCCCe-EEEecCCCCCCH-HHH----HHHHHHHHHcCC-----CEEEehh---------hhhhhhhHH
Confidence 34567999999999995 556999986553 222 345566666665 2332222 222 34667
Q ss_pred HHHHHHhhcCC
Q psy15224 102 SLSKALDTYIP 112 (502)
Q Consensus 102 ~Ll~~l~~~~p 112 (502)
+|-+.+.+.+.
T Consensus 403 eLA~~Vi~a~e 413 (524)
T cd00477 403 ELAEAVIEACE 413 (524)
T ss_pred HHHHHHHHHhc
Confidence 77777766443
No 496
>PF09885 DUF2112: Uncharacterized protein conserved in archaea (DUF2112); InterPro: IPR012356 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=28.46 E-value=2.2e+02 Score=24.17 Aligned_cols=59 Identities=25% Similarity=0.251 Sum_probs=37.7
Q ss_pred ccCCEEEEEEECCCCCC----cchHHHH-HHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhh
Q psy15224 6 AQMDGAILVCSAADGPM----PQTREHI-LLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 69 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~----~qt~e~l-~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~ 69 (502)
..||+||+|-|+.-+.. .-|.|.. .+++..++|.+=+. =.+.++.....+.++.+||+.
T Consensus 79 eeAeAaIIv~~~p~~FGC~GCartnEL~~~lir~k~iPiLel~-----YP~~~ee~~~~V~~I~~FL~~ 142 (143)
T PF09885_consen 79 EEAEAAIIVEDAPIAFGCMGCARTNELTKYLIRQKGIPILELK-----YPTNEEEAIDFVNKINDFLKS 142 (143)
T ss_pred hhhceeeEecCCCccccccccccHHHHHHHHHhhcCCceEEee-----CCCChHHHHHHHHHHHHHHhc
Confidence 46899999999875432 4566654 66778899954331 111134445667788888865
No 497
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=28.30 E-value=66 Score=29.18 Aligned_cols=38 Identities=32% Similarity=0.357 Sum_probs=18.9
Q ss_pred EEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCC
Q psy15224 11 AILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 48 (502)
Q Consensus 11 ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D 48 (502)
+|||+++..|--.|+...++.++..|++..-+++|+++
T Consensus 132 vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~~~ 169 (199)
T PF13500_consen 132 VILVASGRLGTINHTLLTIEALKQRGIRVLGVILNRVP 169 (199)
T ss_dssp EEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEEEEECT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 35555555554444444445555555554444466643
No 498
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=28.16 E-value=2.6e+02 Score=29.94 Aligned_cols=70 Identities=23% Similarity=0.146 Sum_probs=41.1
Q ss_pred chHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHHH
Q psy15224 24 QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSL 103 (502)
Q Consensus 24 qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~L 103 (502)
....|++-++.+|+|. ||+||+...-.. +.. +.+.++.+..+. +++.....+.. .|++..+|
T Consensus 381 NL~~Hi~n~~~fg~pv-VVaiN~F~~Dt~-~Ei----~~~~~~~~~~~~----~~~~~~~~wa~--------GGeGa~eL 442 (578)
T PRK13506 381 NLKWHINNVAQYGLPV-VVAINRFPTDTD-EEL----EWLKEAVLLTGA----FGCEISEAFAQ--------GGEGATAL 442 (578)
T ss_pred HHHHHHHHHHHcCCCe-EEEecCCCCCCH-HHH----HHHHHHHHHcCC----CcEEEechhhc--------cchhHHHH
Confidence 4457999999999995 556999886554 222 234555554221 34443333211 13467778
Q ss_pred HHHHhhcC
Q psy15224 104 SKALDTYI 111 (502)
Q Consensus 104 l~~l~~~~ 111 (502)
-+.+.+.+
T Consensus 443 A~~Vv~a~ 450 (578)
T PRK13506 443 AQAVVRAC 450 (578)
T ss_pred HHHHHHHh
Confidence 77776544
No 499
>KOG3886|consensus
Probab=27.85 E-value=1.9e+02 Score=27.39 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=41.9
Q ss_pred ccCCEEEEEEECCCCCCcchHHH----HHHHHHhC--CCeEEEEEEcCCCCCh---HHHHHHHHHHHHHHHhhcCCCCCC
Q psy15224 6 AQMDGAILVCSAADGPMPQTREH----ILLARQVG--VPYIVVFLNKADMVDD---EELLELVEIEIRELLNKYEFPGND 76 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~----l~~~~~~~--i~~iiv~iNK~D~~~~---~~~~~~i~~~i~~~l~~~~~~~~~ 76 (502)
+..++.+.|.|+..-.+.-+.+| |+.+.+.. .+.+++ +.|||++.. +..+++-...+..+-+.++
T Consensus 80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l-~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~----- 153 (295)
T KOG3886|consen 80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCL-LHKMDLVQEDARELIFQRRKEDLRRLSRPLE----- 153 (295)
T ss_pred eeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEE-EeechhcccchHHHHHHHHHHHHHHhccccc-----
Confidence 56788999999986555444444 33333222 234444 999999864 3344444443333333222
Q ss_pred CeEEEccccc
Q psy15224 77 IPIIKGSAKL 86 (502)
Q Consensus 77 ~~ii~iSa~~ 86 (502)
...+|.|-++
T Consensus 154 ~~~f~TsiwD 163 (295)
T KOG3886|consen 154 CKCFPTSIWD 163 (295)
T ss_pred ccccccchhh
Confidence 3466777654
No 500
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=27.13 E-value=2.5e+02 Score=20.49 Aligned_cols=52 Identities=10% Similarity=0.172 Sum_probs=29.5
Q ss_pred cCCCCeEEEecCC--CCC--CeEEEEEEeCCCcEEEEEEEecCcc------eeEEeecCceEe
Q psy15224 449 YQLDELVRIKDGP--FTD--FSGNIEEVNYEKSRVRVSVTIFGRA------TPVELEFNQVEK 501 (502)
Q Consensus 449 ~~~G~~V~I~~GP--f~g--~~g~v~~~~~~~~rv~v~v~~~g~~------~~v~~~~~~v~~ 501 (502)
|++|+.|+|.+-- |.| |.|+|++...++ ++.|+-+-+-.. ..=.++..+|++
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP 62 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDDLPDEDGESPPLKEWVDARRIRP 62 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT-SS--------EEEEEGGGEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECCcccccccccccEEEechheEEC
Confidence 6789999998522 233 568999988644 777777433222 445577777765
Done!