Query psy15224
Match_columns 502
No_of_seqs 406 out of 3735
Neff 9.0
Searched_HMMs 29240
Date Sat Aug 17 00:31:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2e_A Elongation factor TU (E 100.0 5E-49 1.7E-53 402.0 35.5 303 1-304 83-386 (397)
2 2c78_A Elongation factor TU-A; 100.0 3.3E-48 1.1E-52 397.4 33.2 301 1-303 92-403 (405)
3 3j2k_7 ERF3, eukaryotic polype 100.0 2.2E-46 7.7E-51 386.4 36.0 289 1-302 112-436 (439)
4 3avx_A Elongation factor TS, e 100.0 4.2E-46 1.4E-50 408.5 33.8 302 1-304 376-677 (1289)
5 3p26_A Elongation factor 1 alp 100.0 6.3E-46 2.2E-50 388.4 32.0 295 1-302 128-474 (483)
6 1f60_A Elongation factor EEF1A 100.0 8.5E-46 2.9E-50 384.1 31.5 297 1-305 102-441 (458)
7 1jny_A EF-1-alpha, elongation 100.0 7.4E-45 2.5E-49 375.4 35.4 293 1-304 101-428 (435)
8 3izq_1 HBS1P, elongation facto 100.0 2.7E-45 9.3E-50 391.3 31.6 295 1-302 262-608 (611)
9 3mca_A HBS1, elongation factor 100.0 1.6E-45 5.4E-50 392.1 28.8 290 1-302 272-590 (592)
10 1r5b_A Eukaryotic peptide chai 100.0 3.3E-44 1.1E-48 373.1 26.6 289 1-303 138-465 (467)
11 1zun_B Sulfate adenylate trans 100.0 6.3E-42 2.2E-46 353.5 33.2 287 1-301 121-433 (434)
12 2elf_A Protein translation elo 100.0 2.1E-41 7.1E-46 340.9 26.6 279 1-300 77-369 (370)
13 1s0u_A EIF-2-gamma, translatio 100.0 1.2E-39 4.2E-44 334.0 32.0 279 1-301 98-407 (408)
14 1kk1_A EIF2gamma; initiation o 100.0 3.8E-39 1.3E-43 330.7 34.6 279 1-301 100-409 (410)
15 3sjy_A Translation initiation 100.0 3.5E-39 1.2E-43 330.0 33.2 279 1-301 92-402 (403)
16 1wb1_A Translation elongation 100.0 3.3E-42 1.1E-46 358.8 10.8 285 1-305 90-395 (482)
17 2jvv_A Transcription antitermi 100.0 4.7E-41 1.6E-45 304.1 8.2 176 327-502 6-181 (181)
18 1m1h_A Transcription antitermi 100.0 5.8E-37 2E-41 286.0 10.5 177 323-502 6-248 (248)
19 2oug_A Transcriptional activat 100.0 9.7E-39 3.3E-43 284.1 -10.7 162 327-502 1-162 (162)
20 3e1y_E Eukaryotic peptide chai 100.0 4.1E-32 1.4E-36 249.8 18.5 180 118-306 3-202 (204)
21 3p8b_B Transcription antitermi 100.0 2E-31 6.7E-36 233.6 10.7 144 327-502 2-145 (152)
22 2xhc_A Transcription antitermi 99.9 1.3E-26 4.3E-31 227.1 14.1 138 360-502 210-352 (352)
23 1nz8_A Transcription antitermi 99.9 2E-26 6.9E-31 192.9 10.4 109 328-437 2-116 (119)
24 2ywe_A GTP-binding protein LEP 99.9 2.7E-21 9.1E-26 204.3 19.8 187 3-210 92-282 (600)
25 3vqt_A RF-3, peptide chain rel 99.9 1.6E-21 5.5E-26 205.4 16.4 189 3-210 119-402 (548)
26 3cb4_D GTP-binding protein LEP 99.8 3.1E-20 1.1E-24 196.6 20.4 187 3-210 90-280 (599)
27 1g7s_A Translation initiation 99.8 7.5E-20 2.6E-24 193.9 20.0 192 3-209 89-329 (594)
28 3tr5_A RF-3, peptide chain rel 99.8 1.2E-19 4.1E-24 190.1 19.6 187 3-208 101-382 (528)
29 4fn5_A EF-G 1, elongation fact 99.8 6.6E-20 2.3E-24 199.6 14.9 189 3-210 104-406 (709)
30 2h5e_A Peptide chain release f 99.8 1.7E-19 5.7E-24 189.3 16.9 188 3-209 101-384 (529)
31 2rdo_7 EF-G, elongation factor 99.8 5.3E-19 1.8E-23 191.7 21.1 188 3-209 101-402 (704)
32 3izy_P Translation initiation 99.8 2.9E-21 9.9E-26 201.5 2.4 192 1-212 69-263 (537)
33 1dar_A EF-G, elongation factor 99.8 2.4E-18 8.2E-23 186.4 22.9 188 4-210 97-395 (691)
34 2dy1_A Elongation factor G; tr 99.8 2E-19 6.8E-24 194.2 13.7 185 3-209 93-367 (665)
35 1zo1_I IF2, translation initia 99.8 2.4E-19 8.3E-24 185.5 11.3 185 1-209 68-259 (501)
36 2xex_A Elongation factor G; GT 99.8 3.9E-18 1.3E-22 184.8 20.2 187 4-209 95-394 (693)
37 3j25_A Tetracycline resistance 99.8 8.7E-21 3E-25 203.9 -2.2 189 2-209 85-331 (638)
38 3lpe_A Putative transcription 99.8 1E-18 3.5E-23 138.0 7.1 84 325-433 7-90 (92)
39 1n0u_A EF-2, elongation factor 99.7 1.2E-15 4.1E-20 168.6 17.4 203 3-209 117-474 (842)
40 1nz9_A Transcription antitermi 99.5 5.7E-14 1.9E-18 100.9 7.8 55 448-502 4-58 (58)
41 2e6z_A Transcription elongatio 99.3 3.6E-12 1.2E-16 91.1 5.9 54 447-502 6-59 (59)
42 1xe1_A Hypothetical protein PF 99.0 7.8E-09 2.7E-13 83.0 13.2 83 118-206 31-113 (116)
43 4dhe_A Probable GTP-binding pr 98.7 3.3E-08 1.1E-12 91.5 8.9 98 5-115 113-213 (223)
44 4dcu_A GTP-binding protein ENG 98.6 4.2E-08 1.4E-12 101.3 8.0 91 4-109 274-365 (456)
45 3pqc_A Probable GTP-binding pr 98.6 1.3E-07 4.4E-12 85.2 9.7 93 4-112 101-193 (195)
46 3iev_A GTP-binding protein ERA 98.6 1.4E-08 4.9E-13 99.2 3.4 110 4-131 89-206 (308)
47 2hjg_A GTP-binding protein ENG 98.6 7.3E-08 2.5E-12 98.9 8.0 81 4-89 254-335 (436)
48 1svi_A GTP-binding protein YSX 98.5 5E-07 1.7E-11 81.4 9.6 91 5-111 103-193 (195)
49 1ega_A Protein (GTP-binding pr 98.5 8E-07 2.7E-11 86.4 11.5 91 3-112 84-174 (301)
50 1wf3_A GTP-binding protein; GT 98.5 4.4E-07 1.5E-11 88.2 9.5 88 4-112 83-172 (301)
51 2lkc_A Translation initiation 98.4 1.2E-06 4.2E-11 77.5 10.6 90 4-110 75-168 (178)
52 2dyk_A GTP-binding protein; GT 98.3 9.6E-07 3.3E-11 76.7 7.7 86 4-112 76-161 (161)
53 1mky_A Probable GTP-binding pr 98.2 3.3E-06 1.1E-10 86.6 8.7 91 5-110 261-352 (439)
54 3t1o_A Gliding protein MGLA; G 98.1 4.5E-06 1.5E-10 75.0 7.8 86 5-110 95-189 (198)
55 1zj6_A ADP-ribosylation factor 98.1 3.9E-06 1.3E-10 75.1 6.9 93 5-113 81-178 (187)
56 1mky_A Probable GTP-binding pr 98.1 6.8E-06 2.3E-10 84.3 9.0 87 4-112 78-165 (439)
57 2hjg_A GTP-binding protein ENG 98.1 3.4E-06 1.2E-10 86.5 6.3 87 4-113 79-165 (436)
58 1mh1_A RAC1; GTP-binding, GTPa 98.1 8.7E-06 3E-10 72.3 8.1 95 4-113 73-180 (186)
59 4gzl_A RAS-related C3 botulinu 98.0 8.3E-06 2.8E-10 74.2 7.8 92 4-110 98-202 (204)
60 2efe_B Small GTP-binding prote 98.0 8E-06 2.7E-10 72.3 7.3 90 5-113 82-175 (181)
61 2h57_A ADP-ribosylation factor 98.0 1.2E-05 4E-10 72.1 8.0 92 4-111 87-185 (190)
62 2qu8_A Putative nucleolar GTP- 98.0 1.5E-05 5E-10 73.9 8.9 92 6-111 107-203 (228)
63 2yv5_A YJEQ protein; hydrolase 98.0 1.7E-05 5.9E-10 76.9 9.7 86 4-107 76-163 (302)
64 1upt_A ARL1, ADP-ribosylation 98.0 9.2E-06 3.2E-10 71.1 6.9 92 4-111 71-167 (171)
65 3llu_A RAS-related GTP-binding 98.0 2.9E-05 1E-09 70.0 10.3 94 5-110 93-194 (196)
66 3qq5_A Small GTP-binding prote 98.0 2.8E-06 9.4E-11 86.2 3.6 88 4-114 110-197 (423)
67 2h17_A ADP-ribosylation factor 98.0 2.4E-05 8.2E-10 69.5 9.4 90 4-109 85-179 (181)
68 2atx_A Small GTP binding prote 98.0 2.1E-05 7.2E-10 70.6 8.8 92 4-110 86-190 (194)
69 1d1n_A Initiation factor 2; be 98.0 1.1E-05 3.9E-10 62.9 5.8 79 123-205 8-89 (99)
70 2xhc_A Transcription antitermi 98.0 1.1E-05 3.7E-10 79.0 7.1 50 328-377 3-52 (352)
71 4bas_A ADP-ribosylation factor 97.9 1.8E-05 6E-10 71.3 8.0 91 4-111 83-187 (199)
72 3bwd_D RAC-like GTP-binding pr 97.9 1.4E-05 4.8E-10 70.8 6.8 93 4-111 76-179 (182)
73 3h7h_B Transcription elongatio 97.9 2.3E-06 7.7E-11 68.6 1.3 86 327-434 5-94 (106)
74 4dcu_A GTP-binding protein ENG 97.9 1.1E-05 3.9E-10 83.0 6.7 86 4-112 99-184 (456)
75 2gco_A H9, RHO-related GTP-bin 97.9 4.2E-05 1.5E-09 69.2 9.6 91 4-109 93-196 (201)
76 2fg5_A RAB-22B, RAS-related pr 97.9 1.7E-05 5.9E-10 71.2 6.6 90 5-113 93-186 (192)
77 1zd9_A ADP-ribosylation factor 97.9 3.9E-05 1.3E-09 68.6 9.0 92 5-112 88-184 (188)
78 1moz_A ARL1, ADP-ribosylation 97.9 2.9E-05 9.8E-10 68.8 7.9 92 4-111 82-178 (183)
79 3i8s_A Ferrous iron transport 97.9 3.8E-06 1.3E-10 80.5 2.2 86 6-113 84-169 (274)
80 1r8s_A ADP-ribosylation factor 97.9 2.4E-05 8E-10 68.0 7.1 92 5-112 65-161 (164)
81 2hxs_A RAB-26, RAS-related pro 97.9 2.1E-05 7.1E-10 69.4 6.7 90 5-112 77-172 (178)
82 2crv_A IF-2MT, translation ini 97.8 5.7E-05 2E-09 61.0 8.3 80 123-206 12-98 (120)
83 2fh5_B SR-beta, signal recogni 97.8 3.5E-05 1.2E-09 70.4 8.2 99 5-110 76-213 (214)
84 2x77_A ADP-ribosylation factor 97.8 2.9E-05 9.9E-10 69.4 7.4 92 4-111 86-182 (189)
85 1ksh_A ARF-like protein 2; sma 97.8 4.1E-05 1.4E-09 68.1 8.0 93 4-112 82-179 (186)
86 3reg_A RHO-like small GTPase; 97.8 1.2E-05 4.3E-10 72.2 4.1 92 4-111 91-186 (194)
87 2fv8_A H6, RHO-related GTP-bin 97.8 5.8E-05 2E-09 68.6 8.5 93 4-111 93-198 (207)
88 3clv_A RAB5 protein, putative; 97.8 3.3E-05 1.1E-09 69.5 6.8 86 5-110 114-201 (208)
89 1m2o_B GTP-binding protein SAR 97.8 5.5E-05 1.9E-09 67.8 8.1 91 4-110 87-189 (190)
90 3t5d_A Septin-7; GTP-binding p 97.8 3E-05 1E-09 74.1 6.6 88 7-112 115-203 (274)
91 2j0v_A RAC-like GTP-binding pr 97.8 1.9E-05 6.4E-10 72.1 4.9 94 4-112 77-179 (212)
92 2gf9_A RAS-related protein RAB 97.8 3.3E-05 1.1E-09 69.0 6.5 89 4-111 91-183 (189)
93 2cxx_A Probable GTP-binding pr 97.8 8.9E-05 3E-09 66.0 9.3 90 5-111 80-182 (190)
94 1z0j_A RAB-22, RAS-related pro 97.8 3.7E-05 1.3E-09 67.0 6.7 89 5-112 76-168 (170)
95 1t9h_A YLOQ, probable GTPase E 97.8 2.4E-05 8.4E-10 75.7 5.8 78 4-88 83-162 (307)
96 2b6h_A ADP-ribosylation factor 97.8 3.3E-05 1.1E-09 69.5 6.3 91 5-111 94-189 (192)
97 3bc1_A RAS-related protein RAB 97.8 4.5E-05 1.5E-09 68.1 7.2 89 4-111 90-183 (195)
98 1fzq_A ADP-ribosylation factor 97.7 4.1E-05 1.4E-09 68.0 6.7 92 5-112 81-177 (181)
99 3gee_A MNME, tRNA modification 97.7 6.7E-05 2.3E-09 77.3 9.1 87 4-112 309-397 (476)
100 3p32_A Probable GTPase RV1496/ 97.7 2.5E-05 8.4E-10 77.7 5.7 91 6-112 191-283 (355)
101 1ek0_A Protein (GTP-binding pr 97.7 1.5E-05 5.1E-10 69.5 3.5 89 5-112 73-168 (170)
102 2erx_A GTP-binding protein DI- 97.7 4.2E-05 1.4E-09 66.7 6.3 89 5-112 72-166 (172)
103 3iby_A Ferrous iron transport 97.7 8.9E-06 3E-10 77.0 1.9 83 6-110 82-164 (256)
104 4djt_A GTP-binding nuclear pro 97.7 3.7E-05 1.3E-09 70.4 6.1 88 5-111 82-173 (218)
105 1f6b_A SAR1; gtpases, N-termin 97.7 8E-05 2.7E-09 67.3 8.1 90 5-110 90-196 (198)
106 3o47_A ADP-ribosylation factor 97.7 3.7E-05 1.3E-09 75.5 6.3 91 5-111 230-325 (329)
107 2j1l_A RHO-related GTP-binding 97.7 0.0001 3.4E-09 67.5 8.8 92 5-111 103-207 (214)
108 2g6b_A RAS-related protein RAB 97.7 6.1E-05 2.1E-09 66.4 7.1 89 4-111 80-172 (180)
109 1vg8_A RAS-related protein RAB 97.7 5.6E-05 1.9E-09 68.4 6.9 89 4-111 77-173 (207)
110 1u0l_A Probable GTPase ENGC; p 97.7 0.00011 3.9E-09 71.1 9.4 86 4-108 81-168 (301)
111 1puj_A YLQF, conserved hypothe 97.7 8.3E-05 2.8E-09 71.3 8.4 86 3-111 19-104 (282)
112 3tkl_A RAS-related protein RAB 97.7 5.4E-05 1.8E-09 67.8 6.6 88 5-111 86-177 (196)
113 1r2q_A RAS-related protein RAB 97.7 4.8E-05 1.6E-09 66.2 6.1 89 5-112 76-168 (170)
114 2fu5_C RAS-related protein RAB 97.7 6.4E-05 2.2E-09 66.6 7.0 89 4-111 77-169 (183)
115 3kkq_A RAS-related protein M-R 97.7 3.2E-05 1.1E-09 68.6 4.9 87 5-110 87-179 (183)
116 1g16_A RAS-related protein SEC 97.7 4.9E-05 1.7E-09 66.2 5.9 87 5-111 73-163 (170)
117 1wms_A RAB-9, RAB9, RAS-relate 97.7 7E-05 2.4E-09 65.8 6.9 89 4-111 76-172 (177)
118 2q3h_A RAS homolog gene family 97.7 0.00014 4.7E-09 65.6 8.9 92 5-111 89-193 (201)
119 3t5g_A GTP-binding protein RHE 97.6 5.2E-05 1.8E-09 67.1 5.8 88 5-111 75-167 (181)
120 2nzj_A GTP-binding protein REM 97.6 0.00011 3.7E-09 64.4 7.9 88 5-111 75-167 (175)
121 3q72_A GTP-binding protein RAD 97.6 7.7E-05 2.6E-09 64.8 6.7 87 5-110 70-161 (166)
122 3dz8_A RAS-related protein RAB 97.6 6.1E-05 2.1E-09 67.4 6.1 87 5-110 93-183 (191)
123 2y8e_A RAB-protein 6, GH09086P 97.6 5.5E-05 1.9E-09 66.5 5.7 89 5-112 84-176 (179)
124 1c1y_A RAS-related protein RAP 97.6 7.4E-05 2.5E-09 64.8 6.4 88 5-110 72-164 (167)
125 2p67_A LAO/AO transport system 97.6 9.2E-05 3.2E-09 73.1 7.8 90 6-111 168-259 (341)
126 3c5h_A Glucocorticoid receptor 97.6 0.00014 4.8E-09 68.6 8.7 84 7-110 162-252 (255)
127 2ce2_X GTPase HRAS; signaling 97.6 6.9E-05 2.4E-09 64.7 6.1 86 5-110 72-162 (166)
128 1xzp_A Probable tRNA modificat 97.6 8.1E-05 2.8E-09 76.8 7.6 83 5-111 321-403 (482)
129 3a1s_A Iron(II) transport prot 97.6 2.5E-05 8.5E-10 74.0 3.3 84 6-111 82-165 (258)
130 1pui_A ENGB, probable GTP-bind 97.6 0.00032 1.1E-08 63.6 10.8 92 6-112 107-198 (210)
131 2wji_A Ferrous iron transport 97.6 2.6E-05 9E-10 68.2 3.3 83 7-111 81-163 (165)
132 2il1_A RAB12; G-protein, GDP, 97.6 2.2E-05 7.7E-10 70.5 2.8 88 5-110 96-187 (192)
133 1ky3_A GTP-binding protein YPT 97.6 0.0001 3.5E-09 64.9 7.1 90 4-110 78-175 (182)
134 4dsu_A GTPase KRAS, isoform 2B 97.6 7.5E-05 2.6E-09 66.3 6.2 87 5-111 73-164 (189)
135 1z0f_A RAB14, member RAS oncog 97.6 4.2E-05 1.4E-09 67.3 4.5 87 5-110 85-175 (179)
136 3con_A GTPase NRAS; structural 97.6 0.00011 3.9E-09 65.4 7.3 88 4-111 89-181 (190)
137 1z2a_A RAS-related protein RAB 97.6 7.8E-05 2.7E-09 64.8 6.0 87 5-110 75-164 (168)
138 3tw8_B RAS-related protein RAB 97.6 0.00012 4E-09 64.5 7.1 89 4-111 78-169 (181)
139 2gj8_A MNME, tRNA modification 97.6 4.1E-05 1.4E-09 67.5 4.0 82 5-112 81-165 (172)
140 1kao_A RAP2A; GTP-binding prot 97.6 2.6E-05 8.8E-10 67.7 2.6 87 5-110 72-163 (167)
141 1z06_A RAS-related protein RAB 97.6 5.5E-05 1.9E-09 67.6 4.8 91 5-111 91-186 (189)
142 3cph_A RAS-related protein SEC 97.6 7.9E-05 2.7E-09 67.7 6.0 87 5-111 90-180 (213)
143 2hup_A RAS-related protein RAB 97.6 7.6E-05 2.6E-09 67.5 5.8 89 5-111 99-191 (201)
144 2yc2_C IFT27, small RAB-relate 97.6 0.00015 5E-09 65.6 7.7 88 4-110 93-189 (208)
145 1zbd_A Rabphilin-3A; G protein 97.6 0.00011 3.9E-09 66.2 7.0 88 4-110 77-168 (203)
146 2a5j_A RAS-related protein RAB 97.5 0.00011 3.9E-09 65.6 6.6 87 5-110 91-181 (191)
147 1x3s_A RAS-related protein RAB 97.5 8.6E-05 2.9E-09 66.4 5.6 88 5-112 85-177 (195)
148 2xtp_A GTPase IMAP family memb 97.5 5.8E-05 2E-09 71.4 4.6 95 4-112 102-207 (260)
149 3oes_A GTPase rhebl1; small GT 97.5 5.2E-05 1.8E-09 68.6 4.1 89 4-111 92-185 (201)
150 2wkq_A NPH1-1, RAS-related C3 97.5 0.0001 3.5E-09 72.1 6.5 93 4-111 223-328 (332)
151 1z08_A RAS-related protein RAB 97.5 7.4E-05 2.5E-09 65.1 4.9 89 4-111 75-167 (170)
152 3q3j_B RHO-related GTP-binding 97.5 0.00013 4.6E-09 66.7 6.7 92 5-111 96-201 (214)
153 2gf0_A GTP-binding protein DI- 97.5 0.00011 3.7E-09 66.0 6.0 88 5-112 77-170 (199)
154 3k53_A Ferrous iron transport 97.5 3.7E-05 1.3E-09 73.3 2.9 84 6-111 80-164 (271)
155 3q85_A GTP-binding protein REM 97.5 0.00017 5.9E-09 62.7 7.1 86 6-110 74-164 (169)
156 3lvq_E ARF-GAP with SH3 domain 97.5 0.00014 4.6E-09 75.8 7.3 93 4-112 386-483 (497)
157 3th5_A RAS-related C3 botulinu 96.6 1.5E-05 5.3E-10 72.2 0.0 90 5-109 99-201 (204)
158 3b1v_A Ferrous iron uptake tra 97.5 4.1E-05 1.4E-09 73.1 2.9 84 7-112 80-163 (272)
159 3r7w_A Gtpase1, GTP-binding pr 97.5 0.00053 1.8E-08 66.6 10.9 78 6-86 79-165 (307)
160 3cnl_A YLQF, putative uncharac 97.5 7.9E-05 2.7E-09 70.6 4.8 80 4-109 18-97 (262)
161 2bcg_Y Protein YP2, GTP-bindin 97.5 9.8E-05 3.4E-09 66.9 5.2 89 4-111 77-169 (206)
162 3ec1_A YQEH GTPase; atnos1, at 97.5 0.00016 5.5E-09 72.1 7.1 91 6-111 70-160 (369)
163 3ihw_A Centg3; RAS, centaurin, 97.5 0.00033 1.1E-08 62.3 8.5 89 6-110 84-177 (184)
164 1lnz_A SPO0B-associated GTP-bi 97.5 0.00013 4.3E-09 72.0 6.2 87 5-112 234-329 (342)
165 2ew1_A RAS-related protein RAB 97.5 0.00012 4.2E-09 66.3 5.6 89 4-111 95-187 (201)
166 1m7b_A RND3/RHOE small GTP-bin 97.5 0.00024 8.3E-09 63.0 7.5 91 4-109 75-179 (184)
167 2p5s_A RAS and EF-hand domain 97.4 4.3E-05 1.5E-09 69.0 2.5 91 5-111 98-195 (199)
168 2f7s_A C25KG, RAS-related prot 97.4 6.1E-05 2.1E-09 68.9 3.4 88 5-111 105-197 (217)
169 3geh_A MNME, tRNA modification 97.4 0.0003 1E-08 72.1 8.7 85 4-113 300-384 (462)
170 1u8z_A RAS-related protein RAL 97.4 0.00015 5.3E-09 62.7 5.5 87 5-110 73-164 (168)
171 2oil_A CATX-8, RAS-related pro 97.4 0.00014 4.7E-09 65.1 5.0 87 5-110 95-185 (193)
172 2bme_A RAB4A, RAS-related prot 97.4 0.00012 4.3E-09 64.8 4.6 89 4-111 79-171 (186)
173 1gwn_A RHO-related GTP-binding 97.4 0.00033 1.1E-08 63.6 7.4 90 5-109 97-200 (205)
174 2fn4_A P23, RAS-related protei 97.4 0.00011 3.8E-09 64.6 4.1 88 5-111 78-170 (181)
175 3h2y_A GTPase family protein; 97.4 0.00017 5.8E-09 71.9 5.7 87 7-110 69-157 (368)
176 2iwr_A Centaurin gamma 1; ANK 97.4 0.00046 1.6E-08 60.6 8.1 89 6-110 71-166 (178)
177 2a9k_A RAS-related protein RAL 97.3 0.00018 6.3E-09 63.6 5.4 88 5-111 87-179 (187)
178 2j69_A Bacterial dynamin-like 97.3 0.00015 5E-09 78.5 5.5 106 5-111 198-323 (695)
179 2rcn_A Probable GTPase ENGC; Y 97.3 0.00095 3.2E-08 65.8 10.7 74 5-88 128-204 (358)
180 3cpj_B GTP-binding protein YPT 97.3 0.00017 5.9E-09 66.3 5.1 90 4-112 82-175 (223)
181 3zvr_A Dynamin-1; hydrolase, D 97.3 6.8E-05 2.3E-09 81.0 2.3 78 6-89 186-264 (772)
182 2o52_A RAS-related protein RAB 97.3 0.00022 7.5E-09 64.4 5.3 88 5-111 95-186 (200)
183 2qtf_A Protein HFLX, GTP-bindi 97.3 0.00028 9.6E-09 70.1 6.4 96 4-114 254-355 (364)
184 2wsm_A Hydrogenase expression/ 97.3 0.00024 8.1E-09 65.1 5.5 83 7-111 129-212 (221)
185 2e87_A Hypothetical protein PH 97.3 0.00089 3E-08 66.4 9.9 84 7-111 246-334 (357)
186 2qag_A Septin-2, protein NEDD5 97.3 0.00029 9.9E-09 70.0 6.3 91 8-113 146-237 (361)
187 1yrb_A ATP(GTP)binding protein 97.3 0.00035 1.2E-08 65.8 6.7 93 4-112 135-256 (262)
188 2wjg_A FEOB, ferrous iron tran 97.3 7.2E-05 2.5E-09 66.6 1.6 85 7-113 85-169 (188)
189 1zo1_I IF2, translation initia 97.3 0.0012 3.9E-08 68.3 10.8 103 101-206 389-492 (501)
190 3gj0_A GTP-binding nuclear pro 97.3 0.0001 3.6E-09 67.6 2.7 86 5-111 85-173 (221)
191 2bov_A RAla, RAS-related prote 97.2 0.00043 1.5E-08 62.4 6.4 88 5-111 83-175 (206)
192 3c5c_A RAS-like protein 12; GD 97.2 0.00045 1.5E-08 61.6 6.0 87 5-110 89-183 (187)
193 3l0i_B RAS-related protein RAB 97.2 4.1E-05 1.4E-09 69.1 -0.9 89 4-111 102-194 (199)
194 3cbq_A GTP-binding protein REM 97.1 0.00064 2.2E-08 61.1 6.7 88 6-112 95-187 (195)
195 2aka_B Dynamin-1; fusion prote 97.1 0.00018 6.2E-09 69.3 2.9 77 6-88 160-238 (299)
196 2www_A Methylmalonic aciduria 97.1 0.0012 4.2E-08 65.2 8.7 90 6-111 186-277 (349)
197 1jwy_B Dynamin A GTPase domain 97.1 0.0002 6.7E-09 69.7 2.8 96 5-113 165-262 (315)
198 2e70_A Transcription elongatio 97.0 0.0018 6.3E-08 46.9 6.7 48 449-500 18-65 (71)
199 2zej_A Dardarin, leucine-rich 97.0 0.00066 2.3E-08 60.2 5.3 96 6-112 78-177 (184)
200 3dpu_A RAB family protein; roc 97.0 0.00043 1.5E-08 72.7 4.7 86 6-112 120-207 (535)
201 2atv_A RERG, RAS-like estrogen 97.0 0.00071 2.4E-08 60.6 5.3 88 5-110 96-188 (196)
202 2g3y_A GTP-binding protein GEM 96.9 0.0014 4.7E-08 59.8 7.0 87 6-111 110-201 (211)
203 1nrj_B SR-beta, signal recogni 96.9 0.00067 2.3E-08 61.9 4.7 79 6-90 81-171 (218)
204 3lxw_A GTPase IMAP family memb 96.9 0.0014 4.7E-08 61.4 6.4 96 5-112 103-207 (247)
205 2exu_A Transcription initiatio 96.8 0.0007 2.4E-08 60.3 3.8 89 322-435 96-191 (200)
206 1vq8_T 50S ribosomal protein L 96.8 0.0014 4.6E-08 53.1 4.7 51 422-482 26-76 (120)
207 3izy_P Translation initiation 96.8 0.0045 1.5E-07 64.5 9.9 103 99-205 426-534 (537)
208 1g7s_A Translation initiation 96.7 0.01 3.6E-07 62.6 12.2 85 120-207 462-549 (594)
209 2cjw_A GTP-binding protein GEM 96.5 0.0043 1.5E-07 55.4 7.0 86 7-111 80-170 (192)
210 2do3_A Transcription elongatio 96.5 0.0046 1.6E-07 44.5 5.5 49 448-500 17-65 (69)
211 3l82_B F-box only protein 4; T 96.5 0.011 3.7E-07 53.3 9.2 88 7-111 125-221 (227)
212 4dkx_A RAS-related protein RAB 96.5 0.0038 1.3E-07 57.1 6.4 88 6-112 84-175 (216)
213 2zjr_R 50S ribosomal protein L 96.5 0.0026 8.8E-08 51.4 4.3 36 447-482 14-49 (115)
214 1wxq_A GTP-binding protein; st 96.4 0.0028 9.4E-08 63.7 5.5 43 35-88 213-255 (397)
215 3r7w_B Gtpase2, GTP-binding pr 96.4 0.01 3.5E-07 57.5 9.0 79 6-86 71-158 (331)
216 2zkr_t 60S ribosomal protein L 96.3 0.0037 1.3E-07 52.3 4.8 36 447-482 47-83 (145)
217 2x2e_A Dynamin-1; nitration, h 96.3 0.00079 2.7E-08 66.7 0.9 75 7-89 167-244 (353)
218 2qag_C Septin-7; cell cycle, c 96.2 0.0055 1.9E-07 61.8 6.1 73 8-88 139-212 (418)
219 3j21_U 50S ribosomal protein L 96.2 0.0047 1.6E-07 50.1 4.4 37 446-482 43-79 (121)
220 3lxx_A GTPase IMAP family memb 96.1 0.015 5E-07 53.8 8.2 95 5-111 110-212 (239)
221 1udx_A The GTP-binding protein 96.1 0.016 5.5E-07 58.4 8.9 86 6-112 234-324 (416)
222 2qm8_A GTPase/ATPase; G protei 96.0 0.0091 3.1E-07 58.5 6.7 91 6-111 167-259 (337)
223 2qpt_A EH domain-containing pr 96.0 0.0045 1.5E-07 64.9 4.5 57 5-63 186-243 (550)
224 3v2d_Y 50S ribosomal protein L 96.0 0.0063 2.1E-07 48.5 4.2 36 447-482 5-40 (110)
225 3u5e_Y L33, YL33, 60S ribosoma 95.8 0.011 3.9E-07 48.1 5.1 37 446-482 47-83 (127)
226 2ckk_A KIN17; beta barrel, rib 95.7 0.025 8.6E-07 46.6 6.8 53 450-502 72-126 (127)
227 3r8s_U 50S ribosomal protein L 95.6 0.013 4.3E-07 46.2 4.6 34 448-482 3-36 (102)
228 3iz5_Y 60S ribosomal protein L 95.5 0.014 4.8E-07 48.8 4.7 37 446-482 46-82 (150)
229 2ftc_N Mitochondrial ribosomal 95.5 0.019 6.4E-07 44.6 5.1 31 452-482 1-31 (96)
230 4a17_S RPL26, 60S ribosomal pr 95.5 0.016 5.3E-07 47.7 4.7 36 446-481 46-81 (135)
231 1cip_A Protein (guanine nucleo 95.2 0.012 4.2E-07 57.9 4.2 94 5-109 214-340 (353)
232 2jz2_A SSL0352 protein; SH3-li 95.2 0.15 5.2E-06 35.3 8.1 51 449-501 2-54 (66)
233 2qnr_A Septin-2, protein NEDD5 95.1 0.048 1.6E-06 52.4 7.8 74 6-87 125-199 (301)
234 3l2o_B F-box only protein 4; s 95.0 0.057 1.9E-06 51.1 7.8 89 7-112 210-307 (312)
235 2hf9_A Probable hydrogenase ni 95.0 0.024 8.1E-07 51.7 5.2 81 8-110 140-221 (226)
236 2ged_A SR-beta, signal recogni 94.9 0.057 1.9E-06 47.6 7.4 46 6-52 117-171 (193)
237 1zcb_A G alpha I/13; GTP-bindi 94.7 0.027 9.3E-07 55.6 5.1 94 5-109 222-349 (362)
238 2f9l_A RAB11B, member RAS onco 94.4 0.058 2E-06 48.0 6.1 87 6-111 76-166 (199)
239 1h65_A Chloroplast outer envel 93.9 0.12 4E-06 48.7 7.4 46 6-52 118-169 (270)
240 3t34_A Dynamin-related protein 93.6 0.017 5.9E-07 57.1 1.1 76 5-89 170-247 (360)
241 3sop_A Neuronal-specific septi 93.5 0.15 5E-06 48.2 7.3 66 4-72 108-174 (270)
242 3bbo_W Ribosomal protein L24; 93.1 0.012 4.2E-07 51.1 -0.8 34 448-481 68-101 (191)
243 2qag_B Septin-6, protein NEDD5 93.1 0.059 2E-06 54.2 4.0 67 10-84 151-217 (427)
244 1oix_A RAS-related protein RAB 92.2 0.15 5.2E-06 45.0 5.2 85 6-109 100-188 (191)
245 3def_A T7I23.11 protein; chlor 90.9 0.58 2E-05 43.6 8.0 45 6-51 115-165 (262)
246 3ohm_A Guanine nucleotide-bind 90.0 0.6 2E-05 45.2 7.2 93 6-109 189-314 (327)
247 2j37_W Signal recognition part 89.3 0.17 5.9E-06 52.1 3.0 42 7-52 213-255 (504)
248 2v3c_C SRP54, signal recogniti 87.9 0.4 1.4E-05 48.4 4.5 46 4-52 207-253 (432)
249 4fid_A G protein alpha subunit 87.2 0.56 1.9E-05 45.6 4.9 45 6-51 183-242 (340)
250 2xtz_A Guanine nucleotide-bind 86.9 0.51 1.8E-05 46.2 4.5 23 77-109 319-341 (354)
251 1tq4_A IIGP1, interferon-induc 86.9 2.4 8.1E-05 42.4 9.4 93 5-113 146-253 (413)
252 1azs_C GS-alpha; complex (lyas 86.1 0.81 2.8E-05 45.6 5.5 45 6-51 239-298 (402)
253 4he6_A Peptidase family U32; u 84.9 1 3.6E-05 34.3 4.4 58 144-205 26-86 (89)
254 2eqm_A PHD finger protein 20-l 83.3 4.9 0.00017 30.5 7.5 54 446-501 17-74 (88)
255 1dj7_B Ferredoxin thioredoxin 79.4 2.3 7.9E-05 30.8 4.1 52 450-501 2-72 (75)
256 1qp2_A Protein (PSAE protein); 75.7 5.6 0.00019 28.2 5.1 53 449-501 2-60 (70)
257 2eqj_A Metal-response element- 73.8 12 0.00042 26.3 6.4 37 445-483 10-48 (66)
258 3dm5_A SRP54, signal recogniti 73.5 5.6 0.00019 40.0 6.7 44 6-52 211-254 (443)
259 3sd4_A PHD finger protein 20; 72.7 7.9 0.00027 27.7 5.6 44 446-491 10-55 (69)
260 3la6_A Tyrosine-protein kinase 66.5 5.6 0.00019 37.4 4.7 47 5-51 222-268 (286)
261 3iz5_N 60S ribosomal protein L 62.3 7.6 0.00026 31.8 4.0 33 448-481 6-38 (134)
262 3izc_N 60S ribosomal protein R 61.1 14 0.00047 30.4 5.4 39 446-485 12-50 (138)
263 3j21_5 50S ribosomal protein L 60.0 8.1 0.00028 28.9 3.5 33 448-481 3-35 (83)
264 2dby_A GTP-binding protein; GD 58.8 16 0.00055 35.7 6.5 15 5-19 97-111 (368)
265 4a18_F RPL14; ribosome, eukary 57.4 12 0.0004 30.3 4.2 33 448-481 6-38 (126)
266 3cio_A ETK, tyrosine-protein k 57.3 13 0.00044 35.1 5.4 45 6-50 235-279 (299)
267 1j8m_F SRP54, signal recogniti 55.4 7.7 0.00026 36.7 3.5 45 5-52 210-254 (297)
268 3kjh_A CO dehydrogenase/acetyl 54.3 5.1 0.00018 36.2 2.0 46 3-48 149-194 (254)
269 3kl4_A SRP54, signal recogniti 54.1 18 0.00061 36.2 6.0 42 7-52 211-253 (433)
270 3cwq_A Para family chromosome 53.5 12 0.00041 33.1 4.3 47 4-51 87-134 (209)
271 1mhn_A SurviVal motor neuron p 52.2 40 0.0014 23.0 5.9 51 448-502 3-56 (59)
272 2joy_A 50S ribosomal protein L 50.9 15 0.0005 28.3 3.7 32 449-481 4-35 (96)
273 1hyq_A MIND, cell division inh 49.9 9 0.00031 35.1 2.9 49 4-52 129-177 (263)
274 3bfv_A CAPA1, CAPB2, membrane 49.4 10 0.00035 35.2 3.2 46 6-51 213-258 (271)
275 1g3q_A MIND ATPase, cell divis 48.6 6.9 0.00024 35.1 1.9 48 4-51 130-177 (237)
276 4a18_N RPL27, ribosomal protei 48.1 30 0.001 28.5 5.4 28 448-475 4-31 (144)
277 4dzz_A Plasmid partitioning pr 47.7 17 0.00057 31.6 4.3 46 4-51 94-144 (206)
278 1vq8_Q 50S ribosomal protein L 47.4 92 0.0031 23.7 7.8 52 448-501 33-94 (96)
279 3qyh_B CO-type nitrIle hydrata 45.9 25 0.00086 31.4 5.0 28 446-473 128-165 (219)
280 4a4f_A SurviVal of motor neuro 45.8 72 0.0025 22.1 6.9 54 447-502 7-61 (64)
281 3j21_R 50S ribosomal protein L 43.2 1.1E+02 0.0037 23.4 7.8 52 448-501 34-95 (97)
282 3of5_A Dethiobiotin synthetase 42.9 28 0.00095 31.3 5.0 40 11-50 143-182 (228)
283 2ph1_A Nucleotide-binding prot 42.5 23 0.00077 32.4 4.4 43 7-49 152-194 (262)
284 3qxc_A Dethiobiotin synthetase 40.1 79 0.0027 28.6 7.7 40 11-51 164-203 (242)
285 4hcz_A PHD finger protein 1; p 40.1 76 0.0026 21.6 5.4 49 448-501 3-53 (58)
286 1jal_A YCHF protein; nucleotid 39.5 37 0.0013 33.0 5.6 15 5-19 94-108 (363)
287 2m0o_A PHD finger protein 1; t 39.3 64 0.0022 23.3 5.2 36 446-483 24-61 (79)
288 3s6w_A Tudor domain-containing 38.2 67 0.0023 21.3 5.2 52 449-502 2-54 (54)
289 3hht_B NitrIle hydratase beta 37.8 45 0.0015 30.0 5.4 28 446-473 139-176 (229)
290 3ea0_A ATPase, para family; al 37.4 14 0.0005 33.1 2.2 48 4-51 137-186 (245)
291 4a9a_A Ribosome-interacting GT 37.4 13 0.00045 36.4 2.0 45 4-50 146-195 (376)
292 1ugp_B NitrIle hydratase beta 37.3 69 0.0023 28.7 6.5 28 446-473 136-173 (226)
293 2zzd_A Thiocyanate hydrolase s 36.8 39 0.0013 27.2 4.3 27 447-473 35-71 (126)
294 1ib8_A Conserved protein SP14. 36.1 80 0.0027 26.7 6.5 49 451-501 103-155 (164)
295 2oze_A ORF delta'; para, walke 34.1 37 0.0013 31.5 4.5 48 4-51 173-226 (298)
296 4a17_P RPL21, 60S ribosomal pr 32.7 1.4E+02 0.0048 25.0 7.1 54 448-501 33-98 (157)
297 2woj_A ATPase GET3; tail-ancho 31.5 45 0.0016 32.1 4.8 42 7-48 234-275 (354)
298 2f62_A Nucleoside 2-deoxyribos 30.6 28 0.00096 29.5 2.7 40 3-42 63-104 (161)
299 3v2d_T 50S ribosomal protein L 30.6 1.7E+02 0.0058 24.1 7.2 50 447-496 20-78 (146)
300 1s2d_A Purine trans deoxyribos 30.0 47 0.0016 28.2 4.1 39 3-42 77-115 (167)
301 1wcv_1 SOJ, segregation protei 28.8 58 0.002 29.4 4.9 48 4-51 130-183 (257)
302 2zkr_q 60S ribosomal protein L 28.8 98 0.0034 26.0 5.6 54 448-501 33-98 (160)
303 3ug7_A Arsenical pump-driving 28.2 1.8E+02 0.0062 27.7 8.5 43 8-50 237-279 (349)
304 3k9g_A PF-32 protein; ssgcid, 27.7 54 0.0018 29.7 4.4 46 4-50 163-210 (267)
305 2der_A TRNA-specific 2-thiouri 26.9 3.5E+02 0.012 26.2 10.3 33 270-302 341-374 (380)
306 1cp2_A CP2, nitrogenase iron p 26.8 69 0.0024 28.9 5.0 44 7-50 140-187 (269)
307 2ckk_A KIN17; beta barrel, rib 26.7 2.2E+02 0.0075 22.8 7.3 54 446-502 12-69 (127)
308 3izc_U 60S ribosomal protein R 25.8 1.5E+02 0.005 24.9 6.1 54 448-501 33-98 (160)
309 2lcc_A AT-rich interactive dom 25.8 1E+02 0.0036 22.2 4.7 53 448-500 5-62 (76)
310 2l8d_A Lamin-B receptor; DNA b 25.8 1.7E+02 0.0059 20.4 6.4 55 445-502 6-61 (66)
311 2afh_E Nitrogenase iron protei 25.6 87 0.003 28.7 5.5 44 6-49 142-189 (289)
312 3do6_A Formate--tetrahydrofola 25.2 2.1E+02 0.0073 28.7 8.2 69 24-111 348-416 (543)
313 2xxa_A Signal recognition part 24.7 72 0.0025 31.7 4.9 44 5-52 211-255 (433)
314 3ehd_A Uncharacterized conserv 24.7 55 0.0019 27.7 3.5 39 3-42 65-103 (162)
315 2d9t_A Tudor domain-containing 23.8 2.1E+02 0.007 20.6 6.6 51 448-502 9-62 (78)
316 4fyk_A Deoxyribonucleoside 5'- 23.4 48 0.0016 27.8 2.8 37 3-42 64-100 (152)
317 3end_A Light-independent proto 22.5 40 0.0014 31.4 2.5 47 3-49 175-225 (307)
318 3a8g_B NitrIle hydratase subun 22.5 1E+02 0.0034 27.3 4.8 28 446-473 120-158 (212)
319 2khz_A C-MYC-responsive protei 21.9 50 0.0017 27.9 2.7 41 3-47 73-113 (165)
320 4e8b_A Ribosomal RNA small sub 21.4 1.4E+02 0.0046 27.2 5.7 48 418-476 14-61 (251)
321 3fgn_A Dethiobiotin synthetase 21.4 1.6E+02 0.0056 26.6 6.3 39 10-48 159-197 (251)
322 3p8d_A Medulloblastoma antigen 21.0 2.2E+02 0.0076 20.0 6.3 50 448-501 6-55 (67)
323 1jb0_E Photosystem 1 reaction 20.3 1.3E+02 0.0044 21.4 3.9 36 449-484 1-41 (75)
324 3zq6_A Putative arsenical pump 20.2 2.9E+02 0.01 25.7 8.2 42 9-50 223-264 (324)
325 3szr_A Interferon-induced GTP- 20.2 70 0.0024 33.4 3.9 42 8-52 185-229 (608)
326 1byi_A Dethiobiotin synthase; 20.2 1.7E+02 0.0057 25.3 6.1 40 11-50 141-180 (224)
No 1
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=5e-49 Score=402.02 Aligned_cols=303 Identities=51% Similarity=0.871 Sum_probs=273.4
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
|+.+++.+|++|||+||++|.++||++|+.++..+++|++|+++||||+.+.++.++.+.+++.++++.+++....+|++
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 162 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPII 162 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEE
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEE
Confidence 46789999999999999999999999999999999999877779999998644666777788999999888866678999
Q ss_pred EccccccccCC-CCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeec
Q psy15224 81 KGSAKLALEGD-TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGI 159 (502)
Q Consensus 81 ~iSa~~g~~~~-~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~ 159 (502)
++||++|.|+. ++||.+ ++.+|++.|.+.+|+|.+..+.|++++|+++|.++|.|++++|+|.+|+|++||+|.+.|.
T Consensus 163 ~~SA~~g~n~~~~~~~~g-~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~ 241 (397)
T 1d2e_A 163 VGSALCALEQRDPELGLK-SVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGH 241 (397)
T ss_dssp ECCHHHHHTTCCTTTTHH-HHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEET
T ss_pred EeehhhcccccCCCccCC-cHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEeCC
Confidence 99999998754 578742 2899999999999988888899999999999999999999999999999999999999986
Q ss_pred CCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCCCcccccCCe
Q psy15224 160 KDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYR 239 (502)
Q Consensus 160 ~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~ 239 (502)
+++..++|++|++++.++++|.|||+|+++|+|++..++++|++|++++.+.+...|+|++.|++++++++++++..||+
T Consensus 242 ~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~ 321 (397)
T 1d2e_A 242 SKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFM 321 (397)
T ss_dssp TEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEESTTSCCCEEEEEEEEEECCGGGTSCSSCBCTTCC
T ss_pred CCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeCCCCCCcccEEEEEEEEeccccccCccccCCCCE
Confidence 43478899999999999999999999999999999999999999999887778899999999999865555678999999
Q ss_pred eEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEeCCeEEEEEEEeece
Q psy15224 240 PQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLTKE 304 (502)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~~~~ig~G~i~~~~ 304 (502)
+.+|+++.+++|++.+..++..+++||.+.|+|++.+|+|+++|+||+||++++|+|+|.|++..
T Consensus 322 ~~~~~~t~~~~~~i~l~~~~~~l~~~~~~~v~~~~~~p~~~~~~~r~~lr~~~~ti~~G~i~~~~ 386 (397)
T 1d2e_A 322 PVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTP 386 (397)
T ss_dssp CEEEETTEEEEEEEECCSSCCCBCTTCEEEEEEEEEEEECCCTTCEEEEEETTEEEEEEEEEECC
T ss_pred EEEEEecCEEEEEEEEcCCcccccCCCEEEEEEEECCeEEEccCCeEEEEeCCeEEEEEEEeecc
Confidence 99999999999999855566789999999999999999999999999999999999999998664
No 2
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=3.3e-48 Score=397.38 Aligned_cols=301 Identities=68% Similarity=1.106 Sum_probs=270.7
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
|..+++.+|++|||+||++|.++||++|+.++..+++|++++++||||+.+.++.++.+.+++.++++.+++.....|++
T Consensus 92 ~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 171 (405)
T 2c78_A 92 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVI 171 (405)
T ss_dssp HHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEE
T ss_pred HHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEE
Confidence 45678899999999999999999999999999999999777779999998644666777778889999888765568999
Q ss_pred Ecccccccc----------CCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeec
Q psy15224 81 KGSAKLALE----------GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 150 (502)
Q Consensus 81 ~iSa~~g~~----------~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~ 150 (502)
++||++|.| +..+||. ++.+|++.|.+++|+|.+..+.|++++|+++|+++|.|++++|+|.+|+|++
T Consensus 172 ~~SA~~g~~v~~~~~~~~~~~~~~~~--~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~ 249 (405)
T 2c78_A 172 RGSALLALEQMHRNPKTRRGENEWVD--KIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKV 249 (405)
T ss_dssp ECCHHHHHHHHHHCTTCCTTSCHHHH--HHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBSEEET
T ss_pred EccHHHhhhhhccccccccCCCcccc--cHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEecccccC
Confidence 999999986 4567874 5889999999999988888899999999999999999999999999999999
Q ss_pred CCEEEEeecCC-CeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCC
Q psy15224 151 GEELEIIGIKD-TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGG 229 (502)
Q Consensus 151 gd~v~i~p~~~-~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~ 229 (502)
||+|.+.|.+. ...++|++|++++.++++|.|||+|+++|+|++..++++|++|++++.+.++..|+|++.|+++++++
T Consensus 250 gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~~~~~~~~f~a~v~~l~~~~~~ 329 (405)
T 2c78_A 250 GDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGG 329 (405)
T ss_dssp TCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTTCEEESTTSSEEEEEEEEEEEECCGGGTS
T ss_pred CCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCCCCceeEEEEEEEEEecccCCC
Confidence 99999998542 15789999999999999999999999999999899999999999988777789999999999976555
Q ss_pred CCcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEeCCeEEEEEEEeec
Q psy15224 230 RHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLTK 303 (502)
Q Consensus 230 ~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~~~~ig~G~i~~~ 303 (502)
.++++..||++.+|+++.+++|++.+..++..+++||.+.|+|++.+|+|+++|+||+||++++|+|+|.|++.
T Consensus 330 ~~~~~~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~~~~~~v~~~~~~p~~~~~~~rf~lr~~~~ti~~G~i~~~ 403 (405)
T 2c78_A 330 RHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKI 403 (405)
T ss_dssp CSSCBCTTCCCEEEETTEEEEEEEECCTTCCCBCTTCEEEEEEEEEEEEEECTTCEEEEEETTEEEEEEEEEEE
T ss_pred ccccccCCceEEEEEcccEEEEEEEEccCccccCCCCEEEEEEEECceEEEccCCEEEEEcCCeEEEEEEEEec
Confidence 56789999999999999999999995555678999999999999999999999999999999999999999854
No 3
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.2e-46 Score=386.42 Aligned_cols=289 Identities=26% Similarity=0.354 Sum_probs=255.7
Q ss_pred CccccccCCEEEEEEECCCCCC-------cchHHHHHHHHHhCCCeEEEEEEcCCCCC--h-HHHHHHHHHHHHHHHhhc
Q psy15224 1 MITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMVD--D-EELLELVEIEIRELLNKY 70 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~-------~qt~e~l~~~~~~~i~~iiv~iNK~D~~~--~-~~~~~~i~~~i~~~l~~~ 70 (502)
|++|++.||++||||||++|.+ +||++|+.++..+++|++|+|+||||+.+ + +++++++.+++..+++.+
T Consensus 112 ~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~ 191 (439)
T 3j2k_7 112 MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKV 191 (439)
T ss_pred HHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999987 79999999999999998888899999954 3 567888889999999999
Q ss_pred CCCCC-CCeEEEccccccccCC-----CCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEE
Q psy15224 71 EFPGN-DIPIIKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVE 144 (502)
Q Consensus 71 ~~~~~-~~~ii~iSa~~g~~~~-----~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~ 144 (502)
++... .++++|+||++|.|.. ++||+++ .|++.|.. +|+|....+.|++|+|+++|+ +.|++++|+|.
T Consensus 192 g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~---~L~~~l~~-i~~~~~~~~~p~r~~v~~~~~--~~G~v~~G~v~ 265 (439)
T 3j2k_7 192 GFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGL---PFIPYLDN-LPNFNRSVDGPIRLPIVDKYK--DMGTVVLGKLE 265 (439)
T ss_pred cccccCCeeEEEeeccCCcccccccccccccCch---HHHHHHHh-CCCCccCCCCCeEEEEEEEEc--CCCeEEEEEEE
Confidence 98643 5899999999998843 4899765 45665555 677777889999999999986 78999999999
Q ss_pred EeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCC-CcccEEEEEEEEe
Q psy15224 145 RGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI-KPHKHFTGEIYAL 223 (502)
Q Consensus 145 sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~-~~~~~f~a~v~~l 223 (502)
+|+|++||+|.++|. +..++|++|++++.++++|.|||+|+++|+|++..++++|++|++++++ ..+..|+|++.||
T Consensus 266 ~G~l~~Gd~v~~~p~--~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l 343 (439)
T 3j2k_7 266 SGSIFKGQQLVMMPN--KHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSNLCHSGRTFDVQIVII 343 (439)
T ss_pred eeEEecCCEEEEccC--CceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecCCCCCCceeeEEEEEEEEe
Confidence 999999999999985 4789999999999999999999999999999999999999999998875 5568999999999
Q ss_pred ecCCCCCCcccccCCeeEEEeeeeeEEEEEEcc-------------CCCccccCCCEEEEEEEeCceEecccC------C
Q psy15224 224 SKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVRLINPIAMEEG------L 284 (502)
Q Consensus 224 ~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~~~~~~~~~v~~~~~~pi~~~~~------~ 284 (502)
+++ .++.+||++.+|+++.+++|++..+ .++++++.||.+.|+|++.+|+|+++| +
T Consensus 344 ~~~-----~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~~p~~~e~~~~~~~~g 418 (439)
T 3j2k_7 344 EHK-----SIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMG 418 (439)
T ss_pred CCC-----CcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEEEeCCeEEEeeccccccCC
Confidence 986 4699999999999999999988632 245689999999999999999999997 6
Q ss_pred eEEEEeCCeEEEEEEEee
Q psy15224 285 RFAIREGVQQFIQDNLLT 302 (502)
Q Consensus 285 r~ilr~~~~~ig~G~i~~ 302 (502)
||+|||.|+|+|+|.|++
T Consensus 419 ~f~l~d~~~tv~~G~i~~ 436 (439)
T 3j2k_7 419 RFTLRDEGKTIAIGKVLK 436 (439)
T ss_pred CEEEEECCceEEEEEEEE
Confidence 999999999999999985
No 4
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=4.2e-46 Score=408.54 Aligned_cols=302 Identities=73% Similarity=1.180 Sum_probs=274.1
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
|+.|++.+|++||||||++|.++||++|+.++..+++|++|+++||||+.+.++.++.+.+++.++++.+++....+|++
T Consensus 376 mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~I 455 (1289)
T 3avx_A 376 MITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIV 455 (1289)
T ss_dssp HHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEE
T ss_pred HHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEE
Confidence 46789999999999999999999999999999999999877779999998755667777888999999988866678999
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK 160 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~ 160 (502)
++||++|.|+..+||. ++.+|++.|.+.+|+|.+..+.|++++|+++|.++|.|++++|+|.+|+|++||+|.+.|..
T Consensus 456 pvSAktG~ng~~~w~e--GI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~ 533 (1289)
T 3avx_A 456 RGSALKALEGDAEWEA--KILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 533 (1289)
T ss_dssp ECCSTTTTTCCHHHHH--HHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSS
T ss_pred EEEeccCCCCCccccc--cchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEEecCC
Confidence 9999999776667874 78999999999899888888899999999999999999999999999999999999999864
Q ss_pred CCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCCCcccccCCee
Q psy15224 161 DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 240 (502)
Q Consensus 161 ~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~ 240 (502)
....++|++|++++.++++|.|||+|+++|+|++..++++|++|++++.+.+...|+|++.|+++++++.++++..|+.+
T Consensus 534 ~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~~~~~~~F~A~V~~L~~~egg~~~pi~~G~~p 613 (1289)
T 3avx_A 534 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRP 613 (1289)
T ss_dssp SCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEESTTSCCEEEEEEEEEEECCGGGTSCSSCBCTTCCC
T ss_pred CceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEecCCCCccceeEEEEEEEEccccccccccccCCCce
Confidence 34678999999999999999999999999999999999999999998888888999999999997654456789999999
Q ss_pred EEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEeCCeEEEEEEEeece
Q psy15224 241 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLTKE 304 (502)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~~~~ig~G~i~~~~ 304 (502)
.+|+++.+++|++.+..++..+++||.+.|+|++.+|+|+++|+||+||++++|+|+|.|++..
T Consensus 614 ~l~igT~~vtg~I~L~~~~~~L~~Gd~a~V~L~l~~Pi~ve~g~RFiLRd~grTIG~G~V~~v~ 677 (1289)
T 3avx_A 614 QFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 677 (1289)
T ss_dssp EEECSSCEEEEEEECCTTCCCBCTTCCCEEEEEEEEEEECCTTCEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEeeeeEEEEEEECCCcccccCCCEEEEEEEECceEEEccCCEEEEEeCCeEEEEEEEeeec
Confidence 9999999999999865667789999999999999999999999999999999999999998654
No 5
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=6.3e-46 Score=388.37 Aligned_cols=295 Identities=20% Similarity=0.251 Sum_probs=260.4
Q ss_pred CccccccCCEEEEEEECCCC-------CCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCC
Q psy15224 1 MITGAAQMDGAILVCSAADG-------PMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEF 72 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g-------~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~ 72 (502)
|+.+++.||++|||+||++| +.+||++|+.++..++++++|+|+||||+.++ +..++++.+++..+++.+++
T Consensus 128 ~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~ 207 (483)
T 3p26_A 128 AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGF 207 (483)
T ss_dssp HHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCC
Confidence 45788999999999999998 67899999999999999878888999999885 57788888999999998888
Q ss_pred CCCCCeEEEccccccccCC--------CCCCCcccHHHHHHHHhhcCCC--CCCCCCCCeeEEEeEEEeeC---CCeEEE
Q psy15224 73 PGNDIPIIKGSAKLALEGD--------TGPLGEQSILSLSKALDTYIPT--PNRAIDGAFLLPVEDVFSIS---GRGTVV 139 (502)
Q Consensus 73 ~~~~~~ii~iSa~~g~~~~--------~~w~~~~~i~~Ll~~l~~~~p~--~~~~~~~p~~~~v~~~~~~~---~~G~v~ 139 (502)
.....+++++||++|.|.. ++||.++.+.++|+.+...+|. |....+.|++|+|+++|+++ |.|+++
T Consensus 208 ~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~~v~~v~~~~~~~g~g~v~ 287 (483)
T 3p26_A 208 FEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALV 287 (483)
T ss_dssp CGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEEEEEEEEC---CCSCCEEE
T ss_pred CcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEEEEEEEEccCCcCCCceEE
Confidence 6556899999999998854 5799999999999888665554 56678899999999999987 589999
Q ss_pred EEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc--------eecceeecCCeEEEEecCCCccCcccceEEeCCCC--
Q psy15224 140 TGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR--------KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS-- 209 (502)
Q Consensus 140 ~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~--------~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-- 209 (502)
+|+|.+|+|++||.|.++|. +..++|++|++++ .++++|.|||+|+++|++++..++++|++|+++++
T Consensus 288 ~G~v~~G~l~~gd~v~~~p~--~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~~~~~~~ 365 (483)
T 3p26_A 288 SGKLESGSIQPGESLTIYPS--EQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSS 365 (483)
T ss_dssp EEEEEESEECTTCEEEEETT--TEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCCGGGCCTTCEEECTTCCC
T ss_pred EEEEecceEccCCEEEEeCC--CCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEecccccCCceEEEEcCCCCC
Confidence 99999999999999999984 4789999999994 89999999999999999988899999999999887
Q ss_pred CCcccEEEEEEEEeecCCCCCCcccccCCeeEEEeeeeeEEEEEEcc------------CCCccccCCCEEEEEEEe---
Q psy15224 210 IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP------------KNKEMVMPGDNVLITVRL--- 274 (502)
Q Consensus 210 ~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~~~~~~~~~~~v~~~~--- 274 (502)
+..+..|+|++.|++++ .++.+|+++.+|+++.+++|++..+ ++++++++||.+.|+|++
T Consensus 366 ~~~~~~f~a~v~~l~~~-----~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~~~~~~~l~~~~~~~v~~~~~~~ 440 (483)
T 3p26_A 366 IHSAQCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEV 440 (483)
T ss_dssp CEECSEEEEEEEECSCS-----SCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEECCSCCSCBCSSCEEEEEEEECSC
T ss_pred CceeeEEEEEEEEECCC-----CCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCcccccCccCcCCCCEEEEEEEECCC
Confidence 46679999999999865 5899999999999999999998743 456689999999999999
Q ss_pred CceEecccC------CeEEEEeCCeEEEEEEEee
Q psy15224 275 INPIAMEEG------LRFAIREGVQQFIQDNLLT 302 (502)
Q Consensus 275 ~~pi~~~~~------~r~ilr~~~~~ig~G~i~~ 302 (502)
.+|+|++++ +||+||++|+|+|+|.|++
T Consensus 441 ~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~ 474 (483)
T 3p26_A 441 KRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISE 474 (483)
T ss_dssp SSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEE
T ss_pred CCcEEEEecccCccCCCEEEEeCCCEEEEEEEEE
Confidence 789999975 7999999999999999974
No 6
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=8.5e-46 Score=384.13 Aligned_cols=297 Identities=28% Similarity=0.404 Sum_probs=261.7
Q ss_pred CccccccCCEEEEEEECCCCCCc-------chHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCC
Q psy15224 1 MITGAAQMDGAILVCSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEF 72 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~-------qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~ 72 (502)
|+++++.+|++||||||++|.++ ||++|+.++..+++|++|+|+||||+.++ ++.++.+.+++..+++.+++
T Consensus 102 ~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~ 181 (458)
T 1f60_A 102 MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGY 181 (458)
T ss_dssp HHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 46789999999999999998766 99999999999999978888999999864 56778888899999998887
Q ss_pred CCCCCeEEEccccccccCC-----CCCCCcc---------cHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEE
Q psy15224 73 PGNDIPIIKGSAKLALEGD-----TGPLGEQ---------SILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTV 138 (502)
Q Consensus 73 ~~~~~~ii~iSa~~g~~~~-----~~w~~~~---------~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v 138 (502)
..+.++++|+||++|.|.. .+||.+- +...|+++|.. +++|....+.|++|+|+++|+++|.|++
T Consensus 182 ~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~~p~~~~~~p~r~~i~~v~~~~g~G~v 260 (458)
T 1f60_A 182 NPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSRPTDKPLRLPLQDVYKIGGIGTV 260 (458)
T ss_dssp CGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SCCCCCCTTSCCEEEEEEEEEETTTEEE
T ss_pred CccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cCCCcccCCCCcEEEEEEEEEeCCCcEE
Confidence 5445799999999998843 4899631 03467888776 6677788899999999999999999999
Q ss_pred EEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCC--CCcccEE
Q psy15224 139 VTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS--IKPHKHF 216 (502)
Q Consensus 139 ~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~--~~~~~~f 216 (502)
++|+|.+|++++||+|.++|. +..++|++|+.++.++++|.|||+|+++|+|++..++++|++|++++. +..+..|
T Consensus 261 ~~G~v~~G~l~~gd~v~~~p~--~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~~~~~~~~~~~~f 338 (458)
T 1f60_A 261 PVGRVETGVIKPGMVVTFAPA--GVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASF 338 (458)
T ss_dssp EEEECCBSCBCTTCEEEEETT--TEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSCTTCEEEETTSSCCCCCSEE
T ss_pred EEEEEeCCeEcCCCEEEECCC--CceEEEeEEEECCeEEEEEcCCCEEEEEEcCCcccccCceeEEecCCCCCCceeeEE
Confidence 999999999999999999984 478999999999999999999999999999998899999999999864 5678999
Q ss_pred EEEEEEeecCCCCCCcccccCCeeEEEeeeeeEEEEEEcc-------------CCCccccCCCEEEEEEEeCceEecccC
Q psy15224 217 TGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVRLINPIAMEEG 283 (502)
Q Consensus 217 ~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~~~~~~~~~v~~~~~~pi~~~~~ 283 (502)
+|++.|++++ +++.+||++.+|+++.+++|++..+ +++..+++||.+.|+|++.+|+|+++|
T Consensus 339 ~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~ 413 (458)
T 1f60_A 339 NATVIVLNHP-----GQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAF 413 (458)
T ss_dssp EEEEEECSCS-----CCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCEEEEEEEESSCCCCCCT
T ss_pred EEEEEEeCCC-----CCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCCCEEEEEEEECCeEEEecC
Confidence 9999999865 5899999999999999999998743 235689999999999999999999999
Q ss_pred C------eEEEEeCCeEEEEEEEeecee
Q psy15224 284 L------RFAIREGVQQFIQDNLLTKEI 305 (502)
Q Consensus 284 ~------r~ilr~~~~~ig~G~i~~~~~ 305 (502)
+ ||+|||+|+|+|+|.|++...
T Consensus 414 ~~~~~~grf~lr~~~~tv~~G~v~~~~~ 441 (458)
T 1f60_A 414 SEYPPLGRFAVRDMRQTVAVGVIKSVDK 441 (458)
T ss_dssp TTCGGGSEEEEEETTEEEEEEEEEEEEC
T ss_pred ccCCCCCcEEEEECCeEEEEEEEEeecc
Confidence 7 999999999999999987643
No 7
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=7.4e-45 Score=375.39 Aligned_cols=293 Identities=30% Similarity=0.492 Sum_probs=259.9
Q ss_pred CccccccCCEEEEEEECCCC-------CCcchHHHHHHHHHhCCCeEEEEEEcCCCCC--h-HHHHHHHHHHHHHHHhhc
Q psy15224 1 MITGAAQMDGAILVCSAADG-------PMPQTREHILLARQVGVPYIVVFLNKADMVD--D-EELLELVEIEIRELLNKY 70 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g-------~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~--~-~~~~~~i~~~i~~~l~~~ 70 (502)
|+.+++.+|++|||+||++| +.+||++|+.++..++++++|+++||||+.+ + +++++.+.+++.++++.+
T Consensus 101 ~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~ 180 (435)
T 1jny_A 101 MITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSY 180 (435)
T ss_dssp HHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHc
Confidence 46789999999999999999 8899999999999999987777799999987 3 467788889999999998
Q ss_pred CCCCCCCeEEEccccccccCC-----CCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEE
Q psy15224 71 EFPGNDIPIIKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVER 145 (502)
Q Consensus 71 ~~~~~~~~ii~iSa~~g~~~~-----~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~s 145 (502)
++....++++++||++|.|.. ++||.++ .|+++|.. +++|....+.|++++|+++|++++.|++++|+|.+
T Consensus 181 ~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~---~Ll~~l~~-~~~p~~~~~~~~~~~v~~v~~~~~~G~v~~g~v~~ 256 (435)
T 1jny_A 181 GFNTNKVRFVPVVAPSGDNITHKSENMKWYNGP---TLEEYLDQ-LELPPKPVDKPLRIPIQDVYSISGVGTVPVGRVES 256 (435)
T ss_dssp TCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSC---CHHHHHTT-CCCCCCGGGSCCBEEEEEEEEETTTEEEEEEECCB
T ss_pred CCCcCCceEEEeecccCccccccccccccccch---hHHHHHhc-cCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEec
Confidence 886556899999999998742 4799764 67777776 45566666789999999999999999999999999
Q ss_pred eeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCC-CCcccEEEEEEEEee
Q psy15224 146 GIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS-IKPHKHFTGEIYALS 224 (502)
Q Consensus 146 G~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f~a~v~~l~ 224 (502)
|+|++||.|.+.|. +...+|++|++++.++++|.|||+|+++|+|++..++++|++|++++. +.....|+|++.|++
T Consensus 257 G~l~~gd~v~~~p~--~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~~~~~~~~f~a~v~~l~ 334 (435)
T 1jny_A 257 GVLKVGDKIVFMPA--GKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVVW 334 (435)
T ss_dssp SCEETTCEEEEETT--TEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTTSCCCEESEEEEEEEECC
T ss_pred CeEEcCCEEEECCc--eeEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCCCCCceEeEEEEEEEEEEC
Confidence 99999999999974 488999999999999999999999999999998899999999999874 466799999999998
Q ss_pred cCCCCCCcccccCCeeEEEeeeeeEEEEEEcc-------------CCCccccCCCEEEEEEEeCceEecccCC------e
Q psy15224 225 KDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVRLINPIAMEEGL------R 285 (502)
Q Consensus 225 ~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~~~~~~~~~v~~~~~~pi~~~~~~------r 285 (502)
++ +++.+||++.+|+++.+++|++..+ +++..+++||.+.|+|++.+|+|+++|+ |
T Consensus 335 ~~-----~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~gr 409 (435)
T 1jny_A 335 HP-----TALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGR 409 (435)
T ss_dssp CS-----SCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEECCCTTTSGGGTE
T ss_pred CC-----CcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEEEecCCcCCcCcc
Confidence 74 5899999999999999999998743 2356899999999999999999999987 9
Q ss_pred EEEEeCCeEEEEEEEeece
Q psy15224 286 FAIREGVQQFIQDNLLTKE 304 (502)
Q Consensus 286 ~ilr~~~~~ig~G~i~~~~ 304 (502)
|+||++++|+|+|.|++..
T Consensus 410 f~lr~~~~tv~~G~i~~~~ 428 (435)
T 1jny_A 410 FAMRDMGKTVGVGIIVDVK 428 (435)
T ss_dssp EEEEETTEEEEEEEEEEEE
T ss_pred EEEEECCeEEEEEEEeeec
Confidence 9999999999999998653
No 8
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-45 Score=391.26 Aligned_cols=295 Identities=20% Similarity=0.251 Sum_probs=262.0
Q ss_pred CccccccCCEEEEEEECCCC-------CCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCC
Q psy15224 1 MITGAAQMDGAILVCSAADG-------PMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEF 72 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g-------~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~ 72 (502)
|+.+++.||++||||||++| +.+||++|+.++..++++++|+|+||||+.++ +..++++.+++..+++.+++
T Consensus 262 ~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~ 341 (611)
T 3izq_1 262 AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGF 341 (611)
T ss_dssp HTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcc
Confidence 46789999999999999987 67999999999999999988888999999985 57788888999999999888
Q ss_pred CCCCCeEEEccccccccCC--------CCCCCcccHHHHHHHHhhcCCC--CCCCCCCCeeEEEeEEEeeC---CCeEEE
Q psy15224 73 PGNDIPIIKGSAKLALEGD--------TGPLGEQSILSLSKALDTYIPT--PNRAIDGAFLLPVEDVFSIS---GRGTVV 139 (502)
Q Consensus 73 ~~~~~~ii~iSa~~g~~~~--------~~w~~~~~i~~Ll~~l~~~~p~--~~~~~~~p~~~~v~~~~~~~---~~G~v~ 139 (502)
....++++++||++|.|.. ++||.|+.+.++|+.+....|. |....+.|++|+|+++|+++ |.|+++
T Consensus 342 ~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~~V~~v~~~~~~~g~g~v~ 421 (611)
T 3izq_1 342 FEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALV 421 (611)
T ss_dssp CGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEEECCEEECCSSSCSSSSEE
T ss_pred cccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchhhheeeeeccCccCCCeeEE
Confidence 6556899999999998853 6899998888777777555554 56678899999999999988 589999
Q ss_pred EEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc--------eecceeecCCeEEEEecCCCccCcccceEEeCCCC--
Q psy15224 140 TGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR--------KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS-- 209 (502)
Q Consensus 140 ~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~--------~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-- 209 (502)
+|+|.+|+|++||.|.++|. +..++|++|++++ .++++|.|||+|+++|++++..++++|++|+++++
T Consensus 422 ~G~V~~G~lk~Gd~v~~~p~--~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~~di~rGdvl~~~~~~~ 499 (611)
T 3izq_1 422 SGKLESGSIQPGESLTIYPS--EQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSS 499 (611)
T ss_dssp EEEEEESEECTTCEEEETTT--TEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCTTSCCTTCEEBCSTTCS
T ss_pred EEEEEeceeccCCEEEEecC--CceEEEEEEEEcccccccccccccceecCCCcceEEeeeccHhhCcceEEccCCCCCC
Confidence 99999999999999999984 4789999999994 79999999999999999988899999999999877
Q ss_pred CCcccEEEEEEEEeecCCCCCCcccccCCeeEEEeeeeeEEEEEEcc------------CCCccccCCCEEEEEEEe---
Q psy15224 210 IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP------------KNKEMVMPGDNVLITVRL--- 274 (502)
Q Consensus 210 ~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~~~~~~~~~~~v~~~~--- 274 (502)
+..+..|+|++.|++++ .++.+|+++.+|+|+.+++|++..+ +++.++++|+.+.|+|++
T Consensus 500 ~~~~~~f~a~v~~l~~~-----~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~~~~~~~l~~~d~a~v~~~~~~~ 574 (611)
T 3izq_1 500 IHSAQCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEV 574 (611)
T ss_dssp CCCBSCEEEEEEECSCS-----SCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBCTTCSCSSSSCCSEEEEEEESSC
T ss_pred CceeeEEEEEEEEECCC-----CCCCCCCEEEEEECCeEeeEEeeeeeeeecccccccccCccccCCCCEEEEEEEECCC
Confidence 46789999999999865 5899999999999999999998743 345689999999999999
Q ss_pred CceEecccC------CeEEEEeCCeEEEEEEEee
Q psy15224 275 INPIAMEEG------LRFAIREGVQQFIQDNLLT 302 (502)
Q Consensus 275 ~~pi~~~~~------~r~ilr~~~~~ig~G~i~~ 302 (502)
.+|+|++.+ +||+||++|+|+|+|.|++
T Consensus 575 ~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~ 608 (611)
T 3izq_1 575 KRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISE 608 (611)
T ss_dssp SSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEE
T ss_pred CCceEEeecccCCCCCcEEEEeCCCEEEEEEEEE
Confidence 789999986 6999999999999999974
No 9
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-45 Score=392.13 Aligned_cols=290 Identities=23% Similarity=0.290 Sum_probs=252.1
Q ss_pred CccccccCCEEEEEEECCCCC-------CcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHH-hhcC
Q psy15224 1 MITGAAQMDGAILVCSAADGP-------MPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELL-NKYE 71 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~-------~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l-~~~~ 71 (502)
|+.|++.||++||||||++|. .+||++|+.++..+++|++|+|+||||++++ ++.++.+.+++..++ +.++
T Consensus 272 ~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g 351 (592)
T 3mca_A 272 MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVG 351 (592)
T ss_dssp CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhC
Confidence 678999999999999999864 8999999999999999988888999999875 577888889999999 8888
Q ss_pred CCCCCCeEEEccccccccCC-------CCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEE
Q psy15224 72 FPGNDIPIIKGSAKLALEGD-------TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVE 144 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~-------~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~ 144 (502)
+....++++++||++|.|.. ++||.++ .|++.|.+.+| |....+.|++|+|+++|++ +.|++++|+|.
T Consensus 352 ~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~---~Lle~l~~~~p-p~~~~~~p~r~~v~~v~~~-~~g~v~~G~v~ 426 (592)
T 3mca_A 352 FKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGP---TLLSALDQLVP-PEKPYRKPLRLSIDDVYRS-PRSVTVTGRVE 426 (592)
T ss_dssp CCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSC---CHHHHHHTSCC-CSCTTTSCCEEEEEEEEEE-TTEEEEEEEEE
T ss_pred CCccceEEEEEecccCcccccccccccccccchH---HHHHHHHhhcc-ccccccccchheeeEEEec-CCeEEEEEEEe
Confidence 87667899999999998854 5899765 57777777665 5667889999999999999 99999999999
Q ss_pred EeeeecCCEEEEeecCCCeeEEEEEEEEcceecc-eeecCCeEEEEecCCCccCcccceEEeCCCCC-CcccEEEEEEEE
Q psy15224 145 RGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLD-QGQAGDNIGLLLRGTKREDVERGQVLAKPGSI-KPHKHFTGEIYA 222 (502)
Q Consensus 145 sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~-~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~-~~~~~f~a~v~~ 222 (502)
+|+|++||+|.++|. +..++|++|++++.+++ +|.||++|+++|+|++..++++|++|++++.+ ..+..|+|++.|
T Consensus 427 ~G~l~~Gd~v~i~p~--~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~ 504 (592)
T 3mca_A 427 AGNVQVNQVLYDVSS--QEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYENPVRRVRSFVAEIQT 504 (592)
T ss_dssp ESEEETTCEEEETTT--TEEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECSSSCCEEESEEEEEEEE
T ss_pred eeeEccCCEEEEccC--CceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEeccCCCCccccCeEEEEEEE
Confidence 999999999999974 47899999999999999 99999999999999999999999999998874 557899999999
Q ss_pred eecCCCCCCcccccCCeeEEEeeeeeEEEEEEcc----CCCccccCCCEEEEEEE-eCceEeccc------CCeEEEEeC
Q psy15224 223 LSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP----KNKEMVMPGDNVLITVR-LINPIAMEE------GLRFAIREG 291 (502)
Q Consensus 223 l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~~~~v~~~-~~~pi~~~~------~~r~ilr~~ 291 (502)
++++ .|+..||++.+|+|+.+++|++.+. +++.++++|+.+.|+|+ +.+|+|+++ ++||+||++
T Consensus 505 ~~~~-----~pi~~g~~~~l~~~t~~~~~~i~l~~~~~~~~~~l~~gd~~~v~l~fl~~p~~~e~~~~~~~~~rfilr~~ 579 (592)
T 3mca_A 505 FDIH-----GPILSGSTLVLHLGRTVTSVSLKIVTVNNKRSRHIASRKRALVRISFLDGLFPLCLAEECPALGRFILRRS 579 (592)
T ss_dssp CSCS-----SCEETTEEEEEECSSCEEEEEEEEEESSSSCCSEECSSCEEEEEEEESSSCEEECCTTTCHHHHEEEEESS
T ss_pred ECCC-----ccCCCCCEEEEEEcCcEEEEEEEEEeccccchhccCCCCEEEEEEEECCCcEEEEeccCCCCCCeEEEEEC
Confidence 9975 5899999999999999999999542 35778999999999999 899999954 479999999
Q ss_pred CeEEEEEEEee
Q psy15224 292 VQQFIQDNLLT 302 (502)
Q Consensus 292 ~~~ig~G~i~~ 302 (502)
++|+|+|.|++
T Consensus 580 ~~Tv~~G~i~~ 590 (592)
T 3mca_A 580 GDTVAAGIVKE 590 (592)
T ss_dssp SSEEEEEEEEE
T ss_pred CcEEEEEEEEE
Confidence 99999999974
No 10
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=3.3e-44 Score=373.08 Aligned_cols=289 Identities=24% Similarity=0.329 Sum_probs=247.9
Q ss_pred CccccccCCEEEEEEECCCCCC-------cchHHHHHHHHHhCCCeEEEEEEcCCCCC--h-HHHHHHHHHHHHHHHhhc
Q psy15224 1 MITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMVD--D-EELLELVEIEIRELLNKY 70 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~-------~qt~e~l~~~~~~~i~~iiv~iNK~D~~~--~-~~~~~~i~~~i~~~l~~~ 70 (502)
|+.|++.+|++||||||++|.+ +||++|+.++..+|+|++|+|+||||+.+ + +++++.+.+++..+++.+
T Consensus 138 ~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~ 217 (467)
T 1r5b_A 138 MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRV 217 (467)
T ss_dssp ----TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999974 89999999999999997777799999954 3 567888888999999887
Q ss_pred -CCC-CCCCeEEEccccccccC-------CCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEE
Q psy15224 71 -EFP-GNDIPIIKGSAKLALEG-------DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 141 (502)
Q Consensus 71 -~~~-~~~~~ii~iSa~~g~~~-------~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g 141 (502)
++. ...++++++||++|.|. .++||.++. |++.|.. +|.|.+..+.|++++|+++|+ +.|++++|
T Consensus 218 ~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~---L~~~l~~-i~~~~~~~~~p~~~~v~~~~~--~~G~v~~G 291 (467)
T 1r5b_A 218 AGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPS---LLEYLDS-MTHLERKVNAPFIMPIASKYK--DLGTILEG 291 (467)
T ss_dssp HCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCC---HHHHHHH-CCCCHHHHTSCCEEECCEEEE--SSSEEEEE
T ss_pred cCCCccCCceEEecccccccccccccccccCccccchh---HHHHHHh-CCCCcCCCCCCcEEEEEEEEe--CCCeEEEE
Confidence 774 22578999999999873 358998765 4555554 666666678899999999987 47899999
Q ss_pred EEEEeeeecCCEEEEeecCCCeeEEEEEEEEc-ceecceeecCCeEEEEecCCCccCcccceEEeCCCC-CCcccEEEEE
Q psy15224 142 RVERGIVRVGEELEIIGIKDTVKTTCTGVEMF-RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS-IKPHKHFTGE 219 (502)
Q Consensus 142 ~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f~a~ 219 (502)
+|.+|+|++||+|.++|. +..++|++|+++ +.++++|.|||+|+++|+| +..++++|++|++++. +..+..|+|+
T Consensus 292 ~v~~G~l~~gd~v~~~p~--~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~~~~~~~~~~~f~a~ 368 (467)
T 1r5b_A 292 KIEAGSIKKNSNVLVMPI--NQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTSTKNPVHATTRFIAQ 368 (467)
T ss_dssp ECCBSEEETTEEEEEETT--TEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEECSSSCCCEEEEEEEE
T ss_pred EEeeeEEeeCCEEEEccC--CeeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeCCCCCCccceEEEEE
Confidence 999999999999999984 478899999998 8999999999999999999 8899999999999875 4668999999
Q ss_pred EEEeecCCCCCCcccccCCeeEEEeeeeeEEEEEEccC------------CCccccCCCEEEEEEEeCceEecccCC---
Q psy15224 220 IYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPK------------NKEMVMPGDNVLITVRLINPIAMEEGL--- 284 (502)
Q Consensus 220 v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~~~v~~~~~~pi~~~~~~--- 284 (502)
+.|++++ +++.+||++.+|+++.+++|++..+. .++++++||.+.|+|++.+|+|+++|.
T Consensus 369 v~~l~~~-----~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~~~~~~~~~~~~l~~g~~~~v~l~~~~p~~~~~~~~~~ 443 (467)
T 1r5b_A 369 IAILELP-----SILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQ 443 (467)
T ss_dssp EEECSSC-----CCBSSCCCBEEESSSCCCCBEESSCCCCCCSSCCCCSSCCSBCCTTCBCCEEEEEEEEEECCCTTTCH
T ss_pred EEEeCCC-----CccCCCCEEEEEEeCCEEEEEEEEEEEEecCCccccccCccccCCCCEEEEEEEECcEEEEEEcCcCC
Confidence 9999875 57999999999999999999986321 356899999999999999999999993
Q ss_pred ---eEEEEeCCeEEEEEEEeec
Q psy15224 285 ---RFAIREGVQQFIQDNLLTK 303 (502)
Q Consensus 285 ---r~ilr~~~~~ig~G~i~~~ 303 (502)
||+|||.++|+|+|.|++-
T Consensus 444 ~~grf~lrd~~~Tv~~G~i~~~ 465 (467)
T 1r5b_A 444 YMGRFTLRDQGTTVAVGKVVKI 465 (467)
T ss_dssp HHHEEEEECSSSCEEEEEEEEE
T ss_pred CCccEEEEECCeEEEEEEEEEe
Confidence 9999999999999999853
No 11
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=6.3e-42 Score=353.55 Aligned_cols=287 Identities=21% Similarity=0.265 Sum_probs=249.1
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
|+.+++.+|++|||+||++|.++||++|+.++..++++++|+|+||+|+.++ ++.++.+.+++..+++.+++.....++
T Consensus 121 ~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~ 200 (434)
T 1zun_B 121 MATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAF 200 (434)
T ss_dssp HHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEE
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceE
Confidence 4567899999999999999999999999999999999878888999999875 466777888899999888743345789
Q ss_pred EEccccccccCC-----CCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEE
Q psy15224 80 IKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEEL 154 (502)
Q Consensus 80 i~iSa~~g~~~~-----~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v 154 (502)
+++||++|.|.. ++||.++.+.++++. +|.|....+.|++++|+++++.++.|+.+.|+|.+|+|++||+|
T Consensus 201 i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~----i~~~~~~~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v 276 (434)
T 1zun_B 201 VPMSALKGDNVVNKSERSPWYAGQSLMEILET----VEIASDRNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEI 276 (434)
T ss_dssp EECCTTTCTTTSSCCTTCTTCCSCCTTHHHHH----SCCTTCCCSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEE
T ss_pred EEEeccCCCCcccccccCccccCchHHHHHhc----CCCcccCCCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEE
Confidence 999999998743 489988766655554 45666677899999999999987778889999999999999999
Q ss_pred EEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCC-CcccEEEEEEEEeecCCCCCCcc
Q psy15224 155 EIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI-KPHKHFTGEIYALSKDEGGRHTP 233 (502)
Q Consensus 155 ~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~~~~~~ 233 (502)
.++|. +...+|++|+.++.++++|.|||+|++++++ ..++++|++|++++++ ..+..|+|++.|++. .+
T Consensus 277 ~~~p~--~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~--~~~i~~G~~l~~~~~~~~~~~~f~a~~~~l~~------~~ 346 (434)
T 1zun_B 277 VVLPS--GKSSRVKSIVTFEGELEQAGPGQAVTLTMED--EIDISRGDLLVHADNVPQVSDAFDAMLVWMAE------EP 346 (434)
T ss_dssp EETTT--CCEEEEEEEEETTEEESEECTTCEEEEEESS--CCCCCTTCEEEETTSCCCEEEEEEEEEEECCS------SC
T ss_pred EEecC--CeEEEEEEEEEcCcceeEecCCCEEEEEeCC--ccccCCccEEECCCCCCCcccEEEEEEEEecc------cc
Confidence 99974 4789999999999999999999999999883 5689999999998875 667999999999973 48
Q ss_pred cccCCeeEEEeeeeeEEEEEEccC-----------CCccccCCCEEEEEEEeCceEecccCC------eEEEEeC--CeE
Q psy15224 234 FFSNYRPQFYFRTTDVTGSIELPK-----------NKEMVMPGDNVLITVRLINPIAMEEGL------RFAIREG--VQQ 294 (502)
Q Consensus 234 i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~v~~~~~~pi~~~~~~------r~ilr~~--~~~ 294 (502)
+..|+++++|+|+.+++|++..+. ++..+++||.+.|+|++.+|+|+++|+ ||+|||. ++|
T Consensus 347 l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~~~~~~l~~~d~~~v~~~~~~p~~~~~~~~~~~~grf~l~d~~~~~t 426 (434)
T 1zun_B 347 MLPGKKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALDGYSSNRTTGAFIVIDRLTNGT 426 (434)
T ss_dssp BCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCCCCCSCBCTTCEEEEEEEEEEEEECCCTTTCTTTTEEEEECTTTCCE
T ss_pred CCCCCEEEEEEcCCEEEEEEEEEeeeeccccccccCccEeCCCCEEEEEEEECCeEEEcccccCCccceEEEEECCCCcE
Confidence 999999999999999999987432 467899999999999999999999986 9999874 799
Q ss_pred EEEEEEe
Q psy15224 295 FIQDNLL 301 (502)
Q Consensus 295 ig~G~i~ 301 (502)
+|+|.|+
T Consensus 427 v~~G~i~ 433 (434)
T 1zun_B 427 VAAGMII 433 (434)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999986
No 12
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=2.1e-41 Score=340.93 Aligned_cols=279 Identities=16% Similarity=0.204 Sum_probs=237.5
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEE-cCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLN-KADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iN-K~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
|+.|++.+|++||||| ++|+++||++|+.++..+++|.+|+++| |||+ +. +..+++.+++.++++.+++ ..+|+
T Consensus 77 ~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~-~~~~~~~~~i~~~l~~~~~--~~~~i 151 (370)
T 2elf_A 77 LITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM-HAIDELKAKLKVITSGTVL--QDWEC 151 (370)
T ss_dssp HHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH-HHHHHHHHHHHHHTTTSTT--TTCEE
T ss_pred HHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH-HHHHHHHHHHHHHHHhcCC--CceEE
Confidence 4678899999999999 9999999999999999999998566699 9999 64 5556667788888887665 35799
Q ss_pred EE--ccccccccCCCCCCCcccHHHHHHHHhhcCCCC---CCC-CCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCE
Q psy15224 80 IK--GSAKLALEGDTGPLGEQSILSLSKALDTYIPTP---NRA-IDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEE 153 (502)
Q Consensus 80 i~--iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~---~~~-~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~ 153 (502)
++ +||+++. |+ .++.+|++.|.+.+|++ ... ...|++++++++|++++.|++++|+|++|+|++||+
T Consensus 152 i~~~~SA~~~~-----~g--~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~ 224 (370)
T 2elf_A 152 ISLNTNKSAKN-----PF--EGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDK 224 (370)
T ss_dssp EECCCCTTSSS-----TT--TTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCE
T ss_pred EecccccccCc-----CC--CCHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCE
Confidence 99 9999821 42 28889999888776543 112 345689999999999999999999999999999999
Q ss_pred EEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEEeCCCCCCcccEEEEEEEEeecCCCCCCcc
Q psy15224 154 LEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTP 233 (502)
Q Consensus 154 v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~ 233 (502)
|.+.|. +..++|++|++++.++++|.|||+|+++|+|++..++++|++|++ +. .++..|+|++.|++++ ++
T Consensus 225 v~~~p~--~~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~-~~-~~~~~f~a~v~~l~~~-----~~ 295 (370)
T 2elf_A 225 TKIFPL--DRDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD-KE-IVTTDYTLECTVSKFT-----KK 295 (370)
T ss_dssp EEEETT--TEEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES-CC-EEEEEEEEEEEECTTS-----CC
T ss_pred EEECCC--CcEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC-CC-ceeEEEEEEEEEECCC-----CC
Confidence 999974 478999999999999999999999999999998899999999998 55 7789999999999874 58
Q ss_pred cccCCeeEEEeeeeeEEEEEEccC--C--CccccCCCEEEEEEEeCceEecccCCeEEEEeCC---eEEEEEEE
Q psy15224 234 FFSNYRPQFYFRTTDVTGSIELPK--N--KEMVMPGDNVLITVRLINPIAMEEGLRFAIREGV---QQFIQDNL 300 (502)
Q Consensus 234 i~~g~~~~~~~~~~~~~~~i~~~~--~--~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~~~---~~ig~G~i 300 (502)
+.+|+++.+|+++.+++|++..+. . ...+.+||.+.|+|++.+|+|+++|+||+||+.+ +|+|+|.|
T Consensus 296 i~~g~~~~~~~~t~~~~~~v~~l~~d~~~~~~~~~g~~~~v~l~~~~pi~~~~~~rfilr~~~~~~~tig~G~~ 369 (370)
T 2elf_A 296 IEPASVLHLFVGLQSEPVRVEKILVDGNEVEEAKPGSTCVLELSGNKKLAYSKQDRFLLANLDLTQRFAAYGFS 369 (370)
T ss_dssp BCTTCEEEEEETTEEEEEEEEEEEETTEEESCBCTTCEEEEEEEEEEEEEECTTSCEEEECTTSSSCEEEEEEE
T ss_pred CCCCCEEEEEEcCCEEEEEEEEEEeCCCcceeecCCCEEEEEEEECcEEEEeCCCEEEEEECCCCCEEEEEEEe
Confidence 999999999999999999998552 1 1345689999999999999999999999999855 79999986
No 13
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=1.2e-39 Score=333.99 Aligned_cols=279 Identities=29% Similarity=0.407 Sum_probs=231.4
Q ss_pred CccccccCCEEEEEEECCCCC-CcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 1 MITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~-~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
|+.|++.+|++|||+||++|. .+||++|+.++..++++.+|+++||||+.+.+ ......+++.++++.+.. ...++
T Consensus 98 ~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~-~~~~~~~~i~~~l~~~~~--~~~~~ 174 (408)
T 1s0u_A 98 MLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK-QAEENYEQIKEFVKGTIA--ENAPI 174 (408)
T ss_dssp HHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT-TTTTHHHHHHHHHTTSTT--TTCCE
T ss_pred HHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH-HHHHHHHHHHHHHhhcCC--CCCeE
Confidence 567899999999999999998 89999999999999997787889999998752 112233456667765432 35789
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCC--------CeEEEEEEEEEeeeecC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG--------RGTVVTGRVERGIVRVG 151 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~--------~G~v~~g~v~sG~l~~g 151 (502)
+++||++|. ++.+|++.|.+.++.|....+.|++++|+++|.+++ +|++++|+|.+|+|++|
T Consensus 175 i~vSA~~g~----------gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~g 244 (408)
T 1s0u_A 175 IPISAHHEA----------NIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVG 244 (408)
T ss_dssp EEC----------------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETT
T ss_pred EEeeCCCCC----------CHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecC
Confidence 999999987 899999999988888888889999999999998754 68899999999999999
Q ss_pred CEEEEeecC----CC------eeEEEEEEEEcceecceeecCCeEEEEec---CCCccCcccceEEeCCCCCCc-ccEEE
Q psy15224 152 EELEIIGIK----DT------VKTTCTGVEMFRKLLDQGQAGDNIGLLLR---GTKREDVERGQVLAKPGSIKP-HKHFT 217 (502)
Q Consensus 152 d~v~i~p~~----~~------~~~~V~~i~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~-~~~f~ 217 (502)
|+|.++|.. .+ ..++|++|++++.++++|.|||+|+++++ +++..++++|++|++++.+++ ...|+
T Consensus 245 d~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~~~~~~~~~~ 324 (408)
T 1s0u_A 245 DEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKIT 324 (408)
T ss_dssp CEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTCSCCEEEEEE
T ss_pred CEEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCCCCceeEEEE
Confidence 999999852 11 26899999999999999999999999986 677789999999999887644 67999
Q ss_pred EEEEEeecCCCCC----CcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEe---
Q psy15224 218 GEIYALSKDEGGR----HTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIRE--- 290 (502)
Q Consensus 218 a~v~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~--- 290 (502)
|++.|++++.+.+ ..++..|+++++|+++.+++|++..+.. + .+++++.+|+|+++|+||+||+
T Consensus 325 a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~-------~--~~~~~~~~p~~~~~~~~~~~~~~~~ 395 (408)
T 1s0u_A 325 IRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSARG-------D--IADIKLKLPICAEIGDRVAISRRVG 395 (408)
T ss_dssp EEEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEEET-------T--EEEEEEEEEEECCTTCEEEEEEECS
T ss_pred EEEEEEeccccccccccccCCCCCCEEEEEEcCCEEEEEEEEecC-------C--EEEEEECCcEEecCCCEEEEEEecC
Confidence 9999998753322 3689999999999999999999986542 3 6788899999999999999998
Q ss_pred -CCeEEEEEEEe
Q psy15224 291 -GVQQFIQDNLL 301 (502)
Q Consensus 291 -~~~~ig~G~i~ 301 (502)
+++|+|+|.|+
T Consensus 396 ~~~r~ig~G~i~ 407 (408)
T 1s0u_A 396 SRWRLIGYGTIE 407 (408)
T ss_dssp SSEEEEEEEEEC
T ss_pred CCeEEEEEEEEc
Confidence 68999999986
No 14
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=3.8e-39 Score=330.69 Aligned_cols=279 Identities=28% Similarity=0.366 Sum_probs=237.1
Q ss_pred CccccccCCEEEEEEECCCCC-CcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 1 MITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~-~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
|+.|++.+|++||||||++|. .+||++|+.++..++++++|+|+||||+.+. +..+...+++.++++.... ...|+
T Consensus 100 ~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~-~~~~~~~~~i~~~l~~~~~--~~~~~ 176 (410)
T 1kk1_A 100 MLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK-EKALENYRQIKEFIEGTVA--ENAPI 176 (410)
T ss_dssp HHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH-HHHHHHHHHHHHHHTTSTT--TTCCE
T ss_pred HHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH-HHHHHHHHHHHHHHHhcCc--CCCeE
Confidence 567899999999999999998 8999999999999999878888999999986 3333444567777765432 35799
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCC--------CeEEEEEEEEEeeeecC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG--------RGTVVTGRVERGIVRVG 151 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~--------~G~v~~g~v~sG~l~~g 151 (502)
+++||++|. ++.+|++.|.+.+|.|....+.|++++|+++|.+++ +|++++|+|.+|+|++|
T Consensus 177 i~vSA~~g~----------gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~g 246 (410)
T 1kk1_A 177 IPISALHGA----------NIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVG 246 (410)
T ss_dssp EECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETT
T ss_pred EEeeCCCCC----------CHHHHHHHHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeC
Confidence 999999987 899999999998988887888999999999997754 68899999999999999
Q ss_pred CEEEEeecCC----C------eeEEEEEEEEcceecceeecCCeEEEEec---CCCccCcccceEEeCCCCCCc-ccEEE
Q psy15224 152 EELEIIGIKD----T------VKTTCTGVEMFRKLLDQGQAGDNIGLLLR---GTKREDVERGQVLAKPGSIKP-HKHFT 217 (502)
Q Consensus 152 d~v~i~p~~~----~------~~~~V~~i~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~-~~~f~ 217 (502)
|+|.++|... + ...+|++|+.++.++++|.|||+|+++++ +++..++.+|++|++++.+++ ...|+
T Consensus 247 d~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~ 326 (410)
T 1kk1_A 247 DEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLR 326 (410)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCSCCEEEEEE
T ss_pred CEEEECCCCccccccccccccceeEEEEEEECCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCCCCceeEEEE
Confidence 9999998521 1 25899999999999999999999999886 456688999999999887644 67999
Q ss_pred EEEEEeecCCCCC----CcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCCeEEEEe---
Q psy15224 218 GEIYALSKDEGGR----HTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIRE--- 290 (502)
Q Consensus 218 a~v~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~--- 290 (502)
|++.|++++.+.+ .+++..|+++++|+++.+++|++..+.. + .+++++.+|+|+++|+||+||+
T Consensus 327 a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~-------~--~~~l~~~~p~~~~~~~~~~~~~~~~ 397 (410)
T 1kk1_A 327 LEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGK-------D--EIEVKLQIPVCAEPGDRVAISRQIG 397 (410)
T ss_dssp EEEEECCCCC--CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEET-------T--EEEEEEEEEEECCTTCEEEEEEEET
T ss_pred EEEEEEecccccccccccccCCCCCEEEEEEcCCEEeEEEEEecC-------C--EEEEEeCCcEEecCCCEEEEEEecC
Confidence 9999998753222 3689999999999999999999986542 3 6788999999999999999998
Q ss_pred -CCeEEEEEEEe
Q psy15224 291 -GVQQFIQDNLL 301 (502)
Q Consensus 291 -~~~~ig~G~i~ 301 (502)
+++|+|+|.|+
T Consensus 398 ~~~r~ig~G~i~ 409 (410)
T 1kk1_A 398 SRWRLIGYGIIK 409 (410)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCcEEEEEEEEc
Confidence 67999999986
No 15
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=3.5e-39 Score=330.05 Aligned_cols=279 Identities=24% Similarity=0.316 Sum_probs=238.9
Q ss_pred CccccccCCEEEEEEECCCCC-CcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 1 MITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~-~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
|+.+++.+|+++||+||++|. ++||++|+.++..++++++++|+||||+.+. +..++..+++.++++.++. ...|+
T Consensus 92 ~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~-~~~~~~~~~i~~~l~~~~~--~~~~i 168 (403)
T 3sjy_A 92 MLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK-EEALSQYRQIKQFTKGTWA--ENVPI 168 (403)
T ss_dssp HHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH-HHHHHHHHHHHHHHTTSTT--TTCCE
T ss_pred HHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccch-HHHHHHHHHHHHHHHhhCC--CCCEE
Confidence 457889999999999999998 9999999999999998777888999999986 3344555677777776554 35799
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCC--------CeEEEEEEEEEeeeecC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG--------RGTVVTGRVERGIVRVG 151 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~--------~G~v~~g~v~sG~l~~g 151 (502)
+++||++|. ++.+|++.|.+.+|.+....+.|++++|+++|.+.+ +|++++|+|.+|+|++|
T Consensus 169 i~vSA~~g~----------gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~g 238 (403)
T 3sjy_A 169 IPVSALHKI----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVD 238 (403)
T ss_dssp EECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETT
T ss_pred EEEECCCCc----------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecC
Confidence 999999987 899999999998888888889999999999998766 89999999999999999
Q ss_pred CEEEEeecCC----C------eeEEEEEEEEcceecceeecCCeEEEEec---CCCccCcccceEEeCCCCCCc-ccEEE
Q psy15224 152 EELEIIGIKD----T------VKTTCTGVEMFRKLLDQGQAGDNIGLLLR---GTKREDVERGQVLAKPGSIKP-HKHFT 217 (502)
Q Consensus 152 d~v~i~p~~~----~------~~~~V~~i~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~-~~~f~ 217 (502)
|+|.+.|... + ...+|++|+++++++++|.|||+|+++|+ +++..++.+|++|++++++++ +..|+
T Consensus 239 d~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~ 318 (403)
T 3sjy_A 239 QEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIR 318 (403)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEEETTCCCCEEEEEE
T ss_pred CEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCCEEEEEeccccccchhhhccccEEeCCCCCCcceeEEE
Confidence 9999998531 0 15799999999999999999999999886 556689999999999988654 68999
Q ss_pred EEEEEeecCCCCC----CcccccCCeeEEEeeeeeEEEEEEccCCCccccCCCEEEEEEEeCceEecccCC-eEEE-EeC
Q psy15224 218 GEIYALSKDEGGR----HTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGL-RFAI-REG 291 (502)
Q Consensus 218 a~v~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~pi~~~~~~-r~il-r~~ 291 (502)
|++.|+++..+++ .+++..|+++++|+++.++.|++..+++ + .++++|.+|+|+..|+ ||+| |+.
T Consensus 319 a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~~~-------~--~~~~~l~~p~~~~~g~~r~~i~r~~ 389 (403)
T 3sjy_A 319 IKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKK-------D--EIEVELRRPVAVWSNNIRTVISRQI 389 (403)
T ss_dssp EEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEECS-------S--EEEEEEEEEEECCSSSCEEEEEEEE
T ss_pred EEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEecC-------c--eEEEEeCCcEeeccCCEEEEEEEEe
Confidence 9999999743322 4689999999999999999999986543 2 5889999999999999 9997 643
Q ss_pred C---eEEEEEEEe
Q psy15224 292 V---QQFIQDNLL 301 (502)
Q Consensus 292 ~---~~ig~G~i~ 301 (502)
+ |++|+|.|.
T Consensus 390 ~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 390 AGRWRMIGWGLVE 402 (403)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCcEEEEEEEEEE
Confidence 3 899999984
No 16
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=3.3e-42 Score=358.84 Aligned_cols=285 Identities=24% Similarity=0.390 Sum_probs=252.5
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhc-CCCCCCCeE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY-EFPGNDIPI 79 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~-~~~~~~~~i 79 (502)
|+.+++.+|++|||+||++|+++||++|+.++..+++|.+ +|+||||+.+. +.++.+.+++.++++.. ++. ..++
T Consensus 90 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~I-vviNK~Dl~~~-~~~~~~~~~l~~~l~~~~~~~--~~~i 165 (482)
T 1wb1_A 90 VVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPII-VVITKSDNAGT-EEIKRTEMIMKSILQSTHNLK--NSSI 165 (482)
T ss_dssp HHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBC-EEEECTTSSCH-HHHHHHHHHHHHHHHHSSSGG--GCCE
T ss_pred HHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEE-EEEECCCcccc-hhHHHHHHHHHHHHhhhcccc--cceE
Confidence 4678999999999999999999999999999999999985 55999999984 66677788888888876 653 4789
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCCCC--CCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEe
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP--NRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEII 157 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~--~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~ 157 (502)
+++||++|. ++.+|++.|.+.++.| .+..+.|++++|+++|.+++.|++++|+|.+|+|++||.+.+.
T Consensus 166 i~vSA~~g~----------gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~ 235 (482)
T 1wb1_A 166 IPISAKTGF----------GVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVL 235 (482)
T ss_dssp EECCTTTCT----------THHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCT
T ss_pred EEEECcCCC----------CHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEEC
Confidence 999999987 8999999998876544 5667789999999999999999999999999999999999998
Q ss_pred ecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccCcccceEE-eCCCCCCcccEEEEEEEEeecCCCCCCccccc
Q psy15224 158 GIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVL-AKPGSIKPHKHFTGEIYALSKDEGGRHTPFFS 236 (502)
Q Consensus 158 p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl-~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~ 236 (502)
|. +...+|++|+.++.++++|.|||+|+++|+|++..++++|++| +.++.+.++..|+|++.|+++. ..++..
T Consensus 236 p~--~~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~~~~~~~~~~~a~v~~l~~~----~~~l~~ 309 (482)
T 1wb1_A 236 PI--NMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIVAKIKISDIF----KYNLTP 309 (482)
T ss_dssp TT--CCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTTCCCCCEEEEEECCCCCSSC----CSCCCS
T ss_pred CC--CcEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEecCCCCCceeeEEEEEEEEeccC----CcccCC
Confidence 74 3678999999999999999999999999999988999999999 7777677889999999999863 258999
Q ss_pred CCeeEEEeeeeeEEEEEEccC-C----------CccccCCCEEEEEEEeCceEecccCCeEEEEe---C---CeEEEEEE
Q psy15224 237 NYRPQFYFRTTDVTGSIELPK-N----------KEMVMPGDNVLITVRLINPIAMEEGLRFAIRE---G---VQQFIQDN 299 (502)
Q Consensus 237 g~~~~~~~~~~~~~~~i~~~~-~----------~~~~~~~~~~~v~~~~~~pi~~~~~~r~ilr~---~---~~~ig~G~ 299 (502)
|+++++|+++.+++|++..+. . ...+++||.+.|+|++.+|+|+++++||+||+ + ++|+|+|.
T Consensus 310 g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~~tvg~G~ 389 (482)
T 1wb1_A 310 KMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTLRIXGHGL 389 (482)
T ss_dssp SCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSCCCCCBCC
T ss_pred CCEEEEEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccCceEeeEEE
Confidence 999999999999999997554 1 35788999999999999999999999999998 4 79999999
Q ss_pred Eeecee
Q psy15224 300 LLTKEI 305 (502)
Q Consensus 300 i~~~~~ 305 (502)
|++...
T Consensus 390 v~~~~~ 395 (482)
T 1wb1_A 390 IEEFKP 395 (482)
T ss_dssp EEECCC
T ss_pred EEeccc
Confidence 997754
No 17
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=100.00 E-value=4.7e-41 Score=304.06 Aligned_cols=176 Identities=54% Similarity=1.021 Sum_probs=55.3
Q ss_pred ccceEEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEEeCccceeeeec
Q psy15224 327 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKN 406 (502)
Q Consensus 327 ~~~WYvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~ 406 (502)
.++||++||++|+|++|+++|++++...|+++.++++|+|+++..++++|+++.+.+|+|||||||+++++++.|+.+++
T Consensus 6 ~~~WYvv~t~sg~E~kv~~~L~~~~~~~~~~~~~~ev~vP~~~~~~~~~Gk~~~~~~~lfPGYvFV~~~~~~~~~~~vr~ 85 (181)
T 2jvv_A 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRS 85 (181)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEEEEEECChHHHHHHHHHHHHHhCCccccceEEEeeEEEEEEecCCEEEEEEeeCCCCEEEEEEEcCcchhhhhhc
Confidence 46899999999999999999999999899988899999999999999999999999999999999999999899999999
Q ss_pred cCCeeEeccCCCCcceeCCHHHHHHHHHHHhcCCCCCCCccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEec
Q psy15224 407 TKKVTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIF 486 (502)
Q Consensus 407 ~~~v~~~l~~~~~~p~~v~~~ei~~~~~~~~~~~~~~~~~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~ 486 (502)
+|||.+|+++.+++|+|||++||+.|+..++.+...+.+...|.+||+|+|++|||+|++|.|.++|.++++++|.+++|
T Consensus 86 t~gV~~fvg~~~~~P~pl~~~ei~~i~~~~~~~~~~~~~~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~if 165 (181)
T 2jvv_A 86 VPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIF 165 (181)
T ss_dssp -------------------------------------CCCCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEET
T ss_pred CCCceEEccCCCCeEeEcCHHHHHHHHHHhhccccCCCccccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEEC
Confidence 99999999832689999999999999988765322233455799999999999999999999999999899999999999
Q ss_pred CcceeEEeecCceEeC
Q psy15224 487 GRATPVELEFNQVEKI 502 (502)
Q Consensus 487 g~~~~v~~~~~~v~~~ 502 (502)
||.++|+++++||+|+
T Consensus 166 gr~t~vel~~~qvek~ 181 (181)
T 2jvv_A 166 GRATPVELDFSQVEKA 181 (181)
T ss_dssp TEEEEEEECTTTEEEC
T ss_pred CCCEEEEECHHHEEEC
Confidence 9999999999999985
No 18
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=100.00 E-value=5.8e-37 Score=285.99 Aligned_cols=177 Identities=37% Similarity=0.713 Sum_probs=103.9
Q ss_pred hhccccceEEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEee----------------------------
Q psy15224 323 SINNKKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVK---------------------------- 374 (502)
Q Consensus 323 ~~~~~~~WYvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~---------------------------- 374 (502)
..+..++||++||++|+|++++++|++++...|+++.++++|+|+++....+
T Consensus 6 ~~~~~~~WYvl~t~sg~E~kv~~~L~~~i~~~g~~~~~~~v~vP~e~~~~I~~~G~~~~~~~L~~~~~~i~i~~~~g~n~ 85 (248)
T 1m1h_A 6 VQELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTT 85 (248)
T ss_dssp CCCCCCEEEEEEECTTCHHHHHHHHHHHHHHTTCGGGEEEEECSSEEEEEEEETTEEEEEEESSSSCEEEEEECSSSEEE
T ss_pred hcccCCcEEEEEEECCHHHHHHHHHHHHHHhCCCcceeeEEEeeeEEEEEEEECCEEEEEEcCCCCccEEEEecCCceEE
Confidence 3455678999999999999999999999999999999999999998766544
Q ss_pred ---------------------------cCcE-----------EEEEecccCcEEEEEEEeCccceeeeeccCCeeEeccC
Q psy15224 375 ---------------------------KNQK-----------SVIKKRFFPGYVLIEMEMTDESWHLVKNTKKVTGFIGG 416 (502)
Q Consensus 375 ---------------------------~g~~-----------~~~~~plfpgYvFv~~~~~~~~~~~i~~~~~v~~~l~~ 416 (502)
.|++ ....+|+|||||||+++++++.|+.++++|||.+|+++
T Consensus 86 i~I~dG~irv~es~cPdqCv~~G~I~k~G~~IvCLPnrv~I~I~~~~~lfPGYvfv~~~~~d~~~~~v~~tp~V~~fv~~ 165 (248)
T 1m1h_A 86 FRIENGEVKVVESVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMV 165 (248)
T ss_dssp EEECSSCEEEEECSTTCGGGGSCCBCSTTCEEEETTTTEEEEEEEECSSSTTEEEEEECCCHHHHHHHHTSTTEEEECEE
T ss_pred EEEECCEEEEEECCCChhhhcccccccCCCEEEecCCeEEEEEeccccceeeEEEEEEeccHHHHHHHhcCCCeEEEEcC
Confidence 6666 67889999999999999999999999999999999997
Q ss_pred CCCcceeCCHHHHHHHHHHHhcCCCCCCCccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeec
Q psy15224 417 KSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEF 496 (502)
Q Consensus 417 ~~~~p~~v~~~ei~~~~~~~~~~~~~~~~~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~ 496 (502)
+++|+||+++|++.|+++++.+. .+. ...|.+||+|+|++|||+||+|.|.++|.++++++|.+++|||.++|++++
T Consensus 166 -g~~P~pl~~~ev~~i~~~~~~~~-~~~-~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~v~ifgr~tpv~l~~ 242 (248)
T 1m1h_A 166 -GGKPVPLKEEEVQNILNQIKRGV-KPS-KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDF 242 (248)
T ss_dssp -TTEECEECHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred -CCEEeEeCHHHHHHHHHhhcccc-Ccc-cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEeCCCcEEEEEcH
Confidence 78999999999999999886543 222 557999999999999999999999999998999999999999999999999
Q ss_pred CceEeC
Q psy15224 497 NQVEKI 502 (502)
Q Consensus 497 ~~v~~~ 502 (502)
++|+|+
T Consensus 243 ~~vek~ 248 (248)
T 1m1h_A 243 DQVEKI 248 (248)
T ss_dssp ------
T ss_pred HHEEeC
Confidence 999985
No 19
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=100.00 E-value=9.7e-39 Score=284.10 Aligned_cols=162 Identities=17% Similarity=0.285 Sum_probs=133.2
Q ss_pred ccceEEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEEeCccceeeeec
Q psy15224 327 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKN 406 (502)
Q Consensus 327 ~~~WYvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~ 406 (502)
+++||++||++|+|++++++|++ .++++|+|+++..++++|+++.+.+|+|||||||+++++++.|+.+++
T Consensus 1 ~~~WYvv~t~~g~E~~v~~~L~~---------~~~e~~vP~~~~~~~~~gk~~~~~~plfpgYvFV~~~~~~~~~~~v~~ 71 (162)
T 2oug_A 1 MQSWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINA 71 (162)
T ss_dssp -CEEEEEEECTTTHHHHHHHHHH---------TTCEEECCEEEEEEESSSSEEEEEEESSTTEEEEEECTTTSCHHHHHH
T ss_pred CCeEEEEEecCCHHHHHHHHHHh---------CCCEEECCCEEEEEEcCCcEEEEEEecCCCEEEEEEEcccCceEEEEe
Confidence 36899999999999999999985 245899999999999999999999999999999999999899999999
Q ss_pred cCCeeEeccCCCCcceeCCHHHHHHHHHHHhcCCCCCCCccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEec
Q psy15224 407 TKKVTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIF 486 (502)
Q Consensus 407 ~~~v~~~l~~~~~~p~~v~~~ei~~~~~~~~~~~~~~~~~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~ 486 (502)
+|||.+|+++ +++|+|||++||+.|+..++.. ......|.+||+|+|++|||+|++|.|.++|+++ |+.|.+++|
T Consensus 72 ~~gv~~fv~~-g~~p~pi~~~ei~~i~~~~~~~---~~~~~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k-r~~V~v~if 146 (162)
T 2oug_A 72 TRGVSHFVRF-GASPAIVPSAVIHQLSVYKPKD---IVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLI 146 (162)
T ss_dssp STTEEEECCS-SSSSCCCCCHHHHHHHHCC-----------------CTTHHHHHHHHHHHHTTCSSHHH-HHHHHHHHH
T ss_pred CCCccEEECC-CCEeeEcCHHHHHHHHhhhccc---ccccCCCCCCCEEEEcccCCCCcEEEEEEECCCC-EEEEEEHHh
Confidence 9999999997 7899999999999999887543 2334568999999999999999999999999766 899999999
Q ss_pred CcceeEEeecCceEeC
Q psy15224 487 GRATPVELEFNQVEKI 502 (502)
Q Consensus 487 g~~~~v~~~~~~v~~~ 502 (502)
||.++|+++.++|+|+
T Consensus 147 gr~~~v~l~~~~vek~ 162 (162)
T 2oug_A 147 NKEIKHSVKNTEFRKL 162 (162)
T ss_dssp HHHHHHHHHC------
T ss_pred CCceEEEECHHHEEeC
Confidence 9999999999999985
No 20
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=4.1e-32 Score=249.83 Aligned_cols=180 Identities=19% Similarity=0.310 Sum_probs=160.6
Q ss_pred CCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccC
Q psy15224 118 IDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKRED 197 (502)
Q Consensus 118 ~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~ 197 (502)
.++||+|+|+++|+ +.|++++|+|.+|+|++||+|.++|. +..++|++|+++++++++|.|||+|+++|+|++..+
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~--~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~d 78 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPN--KHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEE 78 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTT--TEEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSC
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCC--CCEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHH
Confidence 46899999999997 79999999999999999999999985 488999999999999999999999999999999999
Q ss_pred cccceEEeCCCCC-CcccEEEEEEEEeecCCCCCCcccccCCeeEEEeeeeeEEEEEEcc-------------CCCcccc
Q psy15224 198 VERGQVLAKPGSI-KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVM 263 (502)
Q Consensus 198 i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~~~ 263 (502)
+++|++|++++++ ..+..|+|++.||+++ .++.+||++.+|+++.+++|++..+ .++++++
T Consensus 79 i~rG~vl~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~ 153 (204)
T 3e1y_E 79 ILPGFILCDPNNLCHSGRTFDAQIVIIEHK-----SIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVK 153 (204)
T ss_dssp CCTTCEEBCSSSCCCCCSEEEEEEECCSCC-----SCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCC
T ss_pred CccceEEECCCCCCchhEEEEEEEEEeCCC-----CccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcC
Confidence 9999999998875 5679999999999975 4799999999999999999998732 1346899
Q ss_pred CCCEEEEEEEeCceEecccC------CeEEEEeCCeEEEEEEEeeceee
Q psy15224 264 PGDNVLITVRLINPIAMEEG------LRFAIREGVQQFIQDNLLTKEIV 306 (502)
Q Consensus 264 ~~~~~~v~~~~~~pi~~~~~------~r~ilr~~~~~ig~G~i~~~~~~ 306 (502)
+||.+.|+|++.+|+|+++| +||+|||.++|+|+|.|++..+.
T Consensus 154 ~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~~ 202 (204)
T 3e1y_E 154 QDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPE 202 (204)
T ss_dssp TTCEEEEEEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC-
T ss_pred CCCEEEEEEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEecC
Confidence 99999999999999999997 79999999999999999976544
No 21
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=99.97 E-value=2e-31 Score=233.59 Aligned_cols=144 Identities=19% Similarity=0.318 Sum_probs=128.5
Q ss_pred ccceEEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEEeCccceeeeec
Q psy15224 327 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKN 406 (502)
Q Consensus 327 ~~~WYvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~ 406 (502)
+++||++||++|+|++++++|+++....++. +.++++|. .|||||||++++.++.|+.+++
T Consensus 2 ~~~WYvv~~~~g~E~~v~~~L~~~~~~~~l~--i~~v~vp~-----------------~fPGYVfVe~~~~~~~~~~v~~ 62 (152)
T 3p8b_B 2 AGKIFAVRVTHGQEETTAKLIYSKVRTYNLP--IYAILAPS-----------------RVKGYIFVEAPNKGVVDEAIRG 62 (152)
T ss_dssp CCEEEEEEECTTCHHHHHHHHHHHHHHHTCC--CCEEEECT-----------------TCCSEEEEEESSHHHHHHHHTT
T ss_pred CceEEEEEEECCHHHHHHHHHHHHHhhcCCc--EEEEEeec-----------------CCCcEEEEEEEchHHHHHHHhC
Confidence 4689999999999999999999998777764 66788874 3999999999999999999999
Q ss_pred cCCeeEeccCCCCcceeCCHHHHHHHHHHHhcCCCCCCCccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEec
Q psy15224 407 TKKVTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIF 486 (502)
Q Consensus 407 ~~~v~~~l~~~~~~p~~v~~~ei~~~~~~~~~~~~~~~~~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~ 486 (502)
+|||++|++. |||++|++.++.. ......|.+||.|+|++|||+|++|.|.++|.++++++|.+.+|
T Consensus 63 t~gV~~fvg~------~v~~~Ei~~il~~-------~~~~~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~ 129 (152)
T 3p8b_B 63 IRHARGVLPG------EVPFKEIEHFLEE-------KPAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDA 129 (152)
T ss_dssp CTTEEEECSS------CBCGGGTGGGCCC-------SCTTTTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSC
T ss_pred CCCEEEeCCC------CCCHHHHHHHhCc-------CCccccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEec
Confidence 9999999974 8999999977532 12345799999999999999999999999999999999999999
Q ss_pred CcceeEEeecCceEeC
Q psy15224 487 GRATPVELEFNQVEKI 502 (502)
Q Consensus 487 g~~~~v~~~~~~v~~~ 502 (502)
||.++|++++++|+++
T Consensus 130 gr~tpvel~~~~v~~i 145 (152)
T 3p8b_B 130 IVPIPVTIKGDYVRLI 145 (152)
T ss_dssp SSCCEEEEEGGGEEEE
T ss_pred ceeEEEEECHHHEEEe
Confidence 9999999999999974
No 22
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=99.94 E-value=1.3e-26 Score=227.14 Aligned_cols=138 Identities=36% Similarity=0.709 Sum_probs=120.4
Q ss_pred eeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEEeCccceeeeeccCCeeEeccCCCCcceeCCHHHHHHHHHHHhcC
Q psy15224 360 FGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNTKKVTGFIGGKSNRPTPISSKEIEEILKQIKKG 439 (502)
Q Consensus 360 ~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~~~v~~~l~~~~~~p~~v~~~ei~~~~~~~~~~ 439 (502)
+..+|+|+++..+.+ +.+.+|||||||||+++++++.|+.++++|||++|+++ +++|+|||++|++.|+..+..+
T Consensus 210 ~e~v~~P~~~~i~i~----k~v~rplFPGYVFV~m~~~d~~w~~Vr~tpGVtgFVg~-g~kP~pl~~~EV~~il~~~~~~ 284 (352)
T 2xhc_A 210 VEVVDYSTRKEIRIY----KTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSS-GGQPVPVKDREMRPILRLAGLE 284 (352)
T ss_dssp EEEEECSSCEEEEEE----CEEEEESSTTEEEEEECCSHHHHHHHHTSTTCCEECCS-SSSCCCCCHHHHHHHHHHTTCS
T ss_pred EEEEEccccceEEEE----EEEEecCCCCEEEEEEEcchhhHHHHhcCCCeeEEcCC-CCEEeecCHHHHHHHHHhhccc
Confidence 335899998877653 57889999999999999999999999999999999997 7899999999999999888653
Q ss_pred C--CC--C-CCccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEeC
Q psy15224 440 V--EK--P-RPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 502 (502)
Q Consensus 440 ~--~~--~-~~~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~~ 502 (502)
. .. + .+...|.+||.|+|++|||+|++|.|.++|.+++|++|++++|||.++|+++++||+|+
T Consensus 285 ~~~~~~~~~~~~~~f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~V~ifGR~tpVeL~~~qVek~ 352 (352)
T 2xhc_A 285 EYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEVEKI 352 (352)
T ss_dssp CCC---------CCCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEEEETTEEEEEEEEGGGEECC
T ss_pred ccccccccccccccCCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEEEEECCCcEEEEEchHHEEEC
Confidence 1 11 1 33457999999999999999999999999999999999999999999999999999985
No 23
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=99.93 E-value=2e-26 Score=192.88 Aligned_cols=109 Identities=39% Similarity=0.857 Sum_probs=103.0
Q ss_pred cceEEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEeecC-cEEEEEecccCcEEEEEEEeCc-----cce
Q psy15224 328 KRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKN-QKSVIKKRFFPGYVLIEMEMTD-----ESW 401 (502)
Q Consensus 328 ~~WYvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g-~~~~~~~plfpgYvFv~~~~~~-----~~~ 401 (502)
++|||+||.+|+|++|+++|++++...|+++.++++|+|++++.++++| +++.+.+|+|||||||++++++ +.|
T Consensus 2 ~~WYvv~t~sg~E~kv~~~L~~~~~~~~~~~~~~ev~vP~~~v~~~~~g~k~~~~~~~lfPGYVFV~~~~~~~~~~~~~~ 81 (119)
T 1nz8_A 2 IEWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFPGYLFIQMDLGDEEEPNEAW 81 (119)
T ss_dssp CEEEEEECCTTTHHHHHHHHHHHHHHHTCTTTCCEEECSEEEEEEECSSSCEEEEEEESSTTEEEEEECCCSSSSCCHHH
T ss_pred CeEEEEEEECCcHHHHHHHHHHHHHhCCCcccceEEECceEEEEEECCCCEEEEEEEeCCCCEEEEEeeccccccchhHH
Confidence 5899999999999999999999999999988899999999999999999 9999999999999999999988 899
Q ss_pred eeeeccCCeeEeccCCCCcceeCCHHHHHHHHHHHh
Q psy15224 402 HLVKNTKKVTGFIGGKSNRPTPISSKEIEEILKQIK 437 (502)
Q Consensus 402 ~~i~~~~~v~~~l~~~~~~p~~v~~~ei~~~~~~~~ 437 (502)
+.++++|||.+|+++ +++|+|||++||+.|+..++
T Consensus 82 ~~vr~t~gV~gfvg~-g~~P~pi~~~ev~~i~~~~~ 116 (119)
T 1nz8_A 82 EVVRGTPGITGFVGA-GMRPVPLSPDEVRHILEVSG 116 (119)
T ss_dssp HHHHHSTTCCCCCCS-SSSSCBCCHHHHHHHHHHHT
T ss_pred HHHHcCCCceEEeCC-CCEEeECCHHHHHHHHHHHh
Confidence 999999999999997 78999999999999998763
No 24
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=2.7e-21 Score=204.32 Aligned_cols=187 Identities=22% Similarity=0.251 Sum_probs=154.4
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
.+++.||++|||+||++|+..||.+++..+...++|.++ ++||||+.+.+ .++..+++.+ .+++. ..+++++
T Consensus 92 r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIv-viNKiDl~~a~--~~~v~~el~~---~lg~~--~~~vi~v 163 (600)
T 2ywe_A 92 RALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIP-VINKIDLPSAD--VDRVKKQIEE---VLGLD--PEEAILA 163 (600)
T ss_dssp HHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEE-EEECTTSTTCC--HHHHHHHHHH---TSCCC--GGGCEEC
T ss_pred HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEE-EEeccCccccC--HHHHHHHHHH---hhCCC--cccEEEE
Confidence 457789999999999999999999999999999999555 59999998741 2233333333 33443 2368999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDT 162 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~ 162 (502)
||++|. ++.+|++.+.+.+|+|....+.|+++.|++++.+++.|++++|+|++|+|++||.|.+.| .+
T Consensus 164 SAktg~----------GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~--~~ 231 (600)
T 2ywe_A 164 SAKEGI----------GIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMS--TG 231 (600)
T ss_dssp BTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETT--TT
T ss_pred EeecCC----------CchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEecc--cc
Confidence 999987 999999999999999888888999999999999999999999999999999999999886 34
Q ss_pred eeEEEEEEEEcc---eecceeecCCeEEEEecCC-CccCcccceEEeCCCCC
Q psy15224 163 VKTTCTGVEMFR---KLLDQGQAGDNIGLLLRGT-KREDVERGQVLAKPGSI 210 (502)
Q Consensus 163 ~~~~V~~i~~~~---~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~~~ 210 (502)
...+|.++..++ .+++++.|||++.+. .|+ +..++++||+|++.+.+
T Consensus 232 ~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~-~gi~~~~~~~~GDtl~~~~~~ 282 (600)
T 2ywe_A 232 KEYEVTEVGAQTPKMTKFDKLSAGDVGYIA-ASIKDVRDIRIGDTITHAKNP 282 (600)
T ss_dssp EEEECCEEEEESSSEEEESCEETTCEEEEE-SSCCCTTSSCTTCEEEESSSC
T ss_pred ceEeeecccccCCCceECCEEecCceeeee-ccccchhhccCCCEEEeCCCc
Confidence 677888888654 679999999977774 454 46789999999986653
No 25
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.86 E-value=1.6e-21 Score=205.42 Aligned_cols=189 Identities=21% Similarity=0.259 Sum_probs=146.9
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhh-------------
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK------------- 69 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~------------- 69 (502)
.+++.+|.|||||||.+|+++||+..++.|..+++|.+++ |||||+... + +..+.+++.+.|..
T Consensus 119 raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~f-INK~Dr~~a-d-~~~~~~~i~~~l~~~~~p~~~Pig~~~ 195 (548)
T 3vqt_A 119 RVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTF-VNKMDREAL-H-PLDVMADIEQHLQIECAPMTWPIGMGS 195 (548)
T ss_dssp HHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEE-EECTTSCCC-C-HHHHHHHHHHHHTSEEEESEEEESCGG
T ss_pred HHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEE-Eecccchhc-c-hhHhhhhhhhhcCCceEeEEeeeecCC
Confidence 5788999999999999999999999999999999998777 999999764 1 12233333333210
Q ss_pred ----------------------------------------------------------cC--------CCCCCCeEEEcc
Q psy15224 70 ----------------------------------------------------------YE--------FPGNDIPIIKGS 83 (502)
Q Consensus 70 ----------------------------------------------------------~~--------~~~~~~~ii~iS 83 (502)
.+ ..+..+|+++.|
T Consensus 196 ~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~~~PV~~gS 275 (548)
T 3vqt_A 196 SFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGELTPVFFGS 275 (548)
T ss_dssp GCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTSEEEEEECB
T ss_pred cccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCCcceeeecc
Confidence 00 012346899999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCCCCCC---------CCCCCeeEEEeEEEee---CCCeEEEEEEEEEeeeecC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIPTPNR---------AIDGAFLLPVEDVFSI---SGRGTVVTGRVERGIVRVG 151 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~---------~~~~p~~~~v~~~~~~---~~~G~v~~g~v~sG~l~~g 151 (502)
|+++. ++..||+.+.+++|+|.. ..+.||...|+++... ++.|+++++||+||+|+.|
T Consensus 276 A~~~~----------Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g 345 (548)
T 3vqt_A 276 AINNF----------GVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRG 345 (548)
T ss_dssp GGGTB----------SHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEEESCEETT
T ss_pred cccCc----------CHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEecceecCC
Confidence 99988 999999999999998753 3467899999998875 7899999999999999999
Q ss_pred CEEEEeecCCCeeEEEEEEEEcc----eecceeecCCeEEEEecCCCccCcccceEEeCCCCC
Q psy15224 152 EELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 210 (502)
Q Consensus 152 d~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 210 (502)
|+|+.. ..+...+|..+..++ .++++|.|||+|++ .| ..++..||+|++.+.+
T Consensus 346 ~~v~~~--~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~g--l~~~~~GDTl~~~~~~ 402 (548)
T 3vqt_A 346 MRLKHH--RTGKDVTVANATIFMAQDRTGVEEAFPGDIIGI--PN--HGTIKIGDTFTESKEV 402 (548)
T ss_dssp CEEEET--TTTEEEECTTCEECCCSSCCSSCEECTTCEEEE--EC--SSCCCTTCEEESSSSC
T ss_pred CEEEee--ccccccccchhhhhccccccccCEEecCCEEEe--cC--CccCccCCEecCCCCc
Confidence 999875 355778888887654 57999999999998 44 4678899999987654
No 26
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.85 E-value=3.1e-20 Score=196.62 Aligned_cols=187 Identities=21% Similarity=0.267 Sum_probs=153.5
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
.+++.+|++|||+||++|+..||.+++..+...++|.+++ +||||+.+.. .++..+++.+.+ ++.. .+++++
T Consensus 90 ~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvV-iNKiDl~~a~--~~~v~~ei~~~l---g~~~--~~vi~v 161 (599)
T 3cb4_D 90 RSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPV-LNKIDLPAAD--PERVAEEIEDIV---GIDA--TDAVRC 161 (599)
T ss_dssp HHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEE-EECTTSTTCC--HHHHHHHHHHHT---CCCC--TTCEEE
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEe-eeccCccccc--HHHHHHHHHHHh---CCCc--ceEEEe
Confidence 4577899999999999999999999999999999995555 9999998741 233334444433 4432 358999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDT 162 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~ 162 (502)
||++|. ++.+|++.+.+.+|+|..+.+.|+++.|.+++.+++.|++++|+|++|+|+.||++.+.+. +
T Consensus 162 SAktg~----------GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~--~ 229 (599)
T 3cb4_D 162 SAKTGV----------GVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMST--G 229 (599)
T ss_dssp CTTTCT----------THHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTT--C
T ss_pred ecccCC----------CchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEEeccc--c
Confidence 999987 8999999999999998888899999999999999999999999999999999999999864 3
Q ss_pred eeEEEEEEEEcc---eecceeecCCeEEEEecCC-CccCcccceEEeCCCCC
Q psy15224 163 VKTTCTGVEMFR---KLLDQGQAGDNIGLLLRGT-KREDVERGQVLAKPGSI 210 (502)
Q Consensus 163 ~~~~V~~i~~~~---~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~~~ 210 (502)
...+|.++..++ .+++++.|||++.+ +.|+ +..++++||+|++.+.+
T Consensus 230 ~~~~v~~i~~~~~~~~~~~~~~aGdi~~~-~~gi~~~~~~~~GDtl~~~~~~ 280 (599)
T 3cb4_D 230 QTYNADRLGIFTPKQVDRTELKCGEVGWL-VCAIKDIHGAPVGDTLTLARNP 280 (599)
T ss_dssp CEEECCEEEEESSSEEECSEECTTCEEEE-ECCCSSGGGSCTTCEEEESSSC
T ss_pred ceeEEeeeeeccCCceECCEEcCCCeeEe-eccccccccCccCCEeeecCCc
Confidence 567788887653 67899999997766 3444 46789999999976553
No 27
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.83 E-value=7.5e-20 Score=193.95 Aligned_cols=192 Identities=24% Similarity=0.262 Sum_probs=148.0
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh--------------------HHHHHHHHHH
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--------------------EELLELVEIE 62 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~--------------------~~~~~~i~~~ 62 (502)
.+++.+|++|||+||++|+++||.+++.++...++|.++ ++||||+.+. .+.+.+...+
T Consensus 89 r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIV-ViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~e 167 (594)
T 1g7s_A 89 RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVV-AANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYE 167 (594)
T ss_dssp SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEE-EEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEE-EecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999555 5999999641 1223333334
Q ss_pred HHHHHhhcCCC----------CCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCC-----CCCCCCCeeEEEe
Q psy15224 63 IRELLNKYEFP----------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP-----NRAIDGAFLLPVE 127 (502)
Q Consensus 63 i~~~l~~~~~~----------~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~-----~~~~~~p~~~~v~ 127 (502)
+.+.+...++. ...+|++++||++|. ++.+|++.|...+|.+ ..+.+.|+++.|+
T Consensus 168 i~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~----------GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~ 237 (594)
T 1g7s_A 168 LVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE----------GIPELLTMLMGLAQQYLREQLKIEEDSPARGTIL 237 (594)
T ss_dssp HHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT----------THHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEE
T ss_pred HHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC----------CchhHHHHHHhhccccchhhhccccCCCceeEEE
Confidence 44455444442 234699999999997 8999999987655421 2245789999999
Q ss_pred EEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEc------------ceecceee--cCCeEEEEecCC
Q psy15224 128 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF------------RKLLDQGQ--AGDNIGLLLRGT 193 (502)
Q Consensus 128 ~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~------------~~~v~~a~--aG~~v~l~l~~~ 193 (502)
+++.++|.|++++|+|++|+|++||.+.++|......++|++|..+ ..++++|. +|+.+++ .+
T Consensus 238 ~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~--~~- 314 (594)
T 1g7s_A 238 EVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVA--PG- 314 (594)
T ss_dssp EEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEEC--SS-
T ss_pred EEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEE--cc-
Confidence 9999999999999999999999999999987543345689999865 34688888 7776665 44
Q ss_pred CccCcccceEEeCCCC
Q psy15224 194 KREDVERGQVLAKPGS 209 (502)
Q Consensus 194 ~~~~i~~G~vl~~~~~ 209 (502)
..++..|+.|+..++
T Consensus 315 -l~~~~~Gd~l~~~~~ 329 (594)
T 1g7s_A 315 -IDDVMAGSPLRVVTD 329 (594)
T ss_dssp -CTTBCTTCEEEECSS
T ss_pred -cCCCCCCCEEEecCC
Confidence 345688999987654
No 28
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.83 E-value=1.2e-19 Score=190.15 Aligned_cols=187 Identities=21% Similarity=0.233 Sum_probs=145.7
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhc--------C---
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY--------E--- 71 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~--------~--- 71 (502)
.++..+|++|+|+|+.+|...||..++..+...++|.+++ +||||+... +. ....+++.+.+... +
T Consensus 101 ~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivv-iNK~Dl~~~-~~-~~~l~ei~~~l~~~~~~~~~pig~~~ 177 (528)
T 3tr5_A 101 RTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTF-INKMDRDTR-PS-IELLDEIESILRIHCAPVTWPIGMGK 177 (528)
T ss_dssp HGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEE-EECTTSCCS-CH-HHHHHHHHHHHCCEEEESEEEESCGG
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEE-EeCCCCccc-cH-HHHHHHHHHhhCCCceeeecccccCC
Confidence 4678899999999999999999999999999999996665 999999764 11 11222333322110 0
Q ss_pred --------------------------------------------------------------------CCCCCCeEEEcc
Q psy15224 72 --------------------------------------------------------------------FPGNDIPIIKGS 83 (502)
Q Consensus 72 --------------------------------------------------------------------~~~~~~~ii~iS 83 (502)
.....+|++++|
T Consensus 178 ~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~PV~~gS 257 (528)
T 3tr5_A 178 YFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGELTPIFFGS 257 (528)
T ss_dssp GCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTSEEEEEECB
T ss_pred ceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCceeEEEecc
Confidence 011234899999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCCCCCCC---------CCCCeeEEEeEEEe--eC-CCeEEEEEEEEEeeeecC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIPTPNRA---------IDGAFLLPVEDVFS--IS-GRGTVVTGRVERGIVRVG 151 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~---------~~~p~~~~v~~~~~--~~-~~G~v~~g~v~sG~l~~g 151 (502)
|++|. |+.+|++.+.+++|+|... .+.|+...|+++.. ++ ++|+++++||+||+|+.|
T Consensus 258 A~~~~----------GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~g 327 (528)
T 3tr5_A 258 AINNF----------GVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKG 327 (528)
T ss_dssp GGGTB----------SHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEETT
T ss_pred ccCCc----------cHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEecCeEcCC
Confidence 99998 9999999999999987532 25789999999874 55 899999999999999999
Q ss_pred CEEEEeecCCCeeEEEEEEEEc----ceecceeecCCeEEEEecCCCccCcccceEEeCCC
Q psy15224 152 EELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 208 (502)
Q Consensus 152 d~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 208 (502)
|.|+..+ .+...+|.+++.+ +.++++|.|||++++ .+ ..+++.||+|++.+
T Consensus 328 ~~v~~~~--~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~--~~--l~~~~~GDtl~~~~ 382 (528)
T 3tr5_A 328 MKAYHVR--LKKEIQINNALTFMAGKRENAEEAWPGDIIGL--HN--HGTIQIGDTFTQGE 382 (528)
T ss_dssp EEEEETT--TTEEEEESSCBCCBTTCSSCCSEECTTCEEEE--EE--SSSCCTTCEEESSC
T ss_pred CEEEecC--CCceEEEeeeEEEeCCCeeECCEECCCCEEEE--cC--CCCCccCCEEcCCC
Confidence 9999874 4577889888864 467999999999988 43 45788999999743
No 29
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.82 E-value=6.6e-20 Score=199.62 Aligned_cols=189 Identities=23% Similarity=0.272 Sum_probs=147.9
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhh-------------
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK------------- 69 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~------------- 69 (502)
++++.+|.|||||||.+|+++||+..++.|...++|.+++ |||||+... + ++...+++...+..
T Consensus 104 ~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~-iNKiDr~~a-~-~~~~~~ei~~~l~~~~~~~~~pi~~~~ 180 (709)
T 4fn5_A 104 RSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVY-VNKMDRQGA-N-FLRVVEQIKKRLGHTPVPVQLAIGAEE 180 (709)
T ss_dssp HHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEE-EECSSSTTC-C-HHHHHHHHHHHHCSCEEESEEEESSST
T ss_pred HHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEE-EccccccCc-c-HHHHHHHhhhhcccceeeeecccCchh
Confidence 5778899999999999999999999999999999998777 999998653 1 11122222222210
Q ss_pred ---------------------------------------------------------------c--------------CC
Q psy15224 70 ---------------------------------------------------------------Y--------------EF 72 (502)
Q Consensus 70 ---------------------------------------------------------------~--------------~~ 72 (502)
. -.
T Consensus 181 ~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~ 260 (709)
T 4fn5_A 181 NFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTL 260 (709)
T ss_dssp TCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred ccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHHHHHHHHHHhhh
Confidence 0 01
Q ss_pred CCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCC--------------------CCCCCCeeEEEeEEEee
Q psy15224 73 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN--------------------RAIDGAFLLPVEDVFSI 132 (502)
Q Consensus 73 ~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~--------------------~~~~~p~~~~v~~~~~~ 132 (502)
.....|+++.||.++. ++..||+.+.+++|+|. ++.+.|+.+.|+++..+
T Consensus 261 ~~~~~pv~~gsa~~~~----------gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d 330 (709)
T 4fn5_A 261 ACEIVPAVCGSSFKNK----------GVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATD 330 (709)
T ss_dssp TTSCEEEEECBTTTTB----------THHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCB
T ss_pred hceeeeeeeeecccCC----------chHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEeecc
Confidence 1224678888888876 88999999999999873 34578999999999999
Q ss_pred CCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc----eecceeecCCeEEEEecCCCccCcccceEEeCCC
Q psy15224 133 SGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 208 (502)
Q Consensus 133 ~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 208 (502)
++.|++++|||+||+|+.||+|+.. ..+...+|..+.... .++++|.||++|++ .|+ .++..|++|++.+
T Consensus 331 ~~~G~la~~RV~sGtl~~G~~v~~~--~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i--~Gl--~~~~~gdTl~~~~ 404 (709)
T 4fn5_A 331 PFVGTLTFARVYSGVLSSGDSVLNS--VKGKKERVGRMVQMHANQREEIKEVRAGDIAAL--IGM--KDVTTGDTLCSIE 404 (709)
T ss_dssp TTTBCCCEEEEEESCEETTCBCBCT--TTCCCCBCCCEECCCSSCCCEESEECTTCEEEE--CSC--SSCCTTCEEECSS
T ss_pred cCCCceEEEeccCCCCCCCCEEEEe--cCCcEEeecceeEeecceeeEeeeecCCCeeee--cCC--CcCccCCEecCCC
Confidence 9999999999999999999999754 334556777777654 58999999999998 665 4688999999876
Q ss_pred CC
Q psy15224 209 SI 210 (502)
Q Consensus 209 ~~ 210 (502)
.+
T Consensus 405 ~~ 406 (709)
T 4fn5_A 405 KP 406 (709)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 30
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.81 E-value=1.7e-19 Score=189.26 Aligned_cols=188 Identities=20% Similarity=0.261 Sum_probs=144.2
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhh-------------
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK------------- 69 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~------------- 69 (502)
.++..+|++|+|+||.+|+..||++++..+...++|.+++ +||||+.+.. . .++.+++.+.+..
T Consensus 101 ~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivv-iNK~Dl~~~~-~-~~~~~~i~~~l~~~~~~~~~pi~sa~ 177 (529)
T 2h5e_A 101 RTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTF-MNKLDRDIRD-P-MELLDEVENELKIGCAPITWPIGCGK 177 (529)
T ss_dssp HGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEE-EECTTSCCSC-H-HHHHHHHHHHHCCEEEESEEEESCGG
T ss_pred HHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEE-EcCcCCcccc-H-HHHHHHHHHHhCCCccceecceeccc
Confidence 4678999999999999999999999999999999996555 9999997641 1 1222333332210
Q ss_pred ---------------c----CC------------------------------------------------CCCCCeEEEc
Q psy15224 70 ---------------Y----EF------------------------------------------------PGNDIPIIKG 82 (502)
Q Consensus 70 ---------------~----~~------------------------------------------------~~~~~~ii~i 82 (502)
+ +. .+...|++++
T Consensus 178 ~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~Pv~~g 257 (529)
T 2h5e_A 178 LFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFG 257 (529)
T ss_dssp GCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTTSEEEEEEC
T ss_pred CcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhCceeEEEee
Confidence 0 00 1123588889
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcCCCCCCC---------CCCCeeEEEeEEEe---eCCCeEEEEEEEEEeeeec
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRA---------IDGAFLLPVEDVFS---ISGRGTVVTGRVERGIVRV 150 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~---------~~~p~~~~v~~~~~---~~~~G~v~~g~v~sG~l~~ 150 (502)
||++|. ++..||+.|.+++|+|... .+.||...|+++.. .+++|++++|||+||+|+.
T Consensus 258 SA~~~~----------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~~ 327 (529)
T 2h5e_A 258 TALGNF----------GVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEK 327 (529)
T ss_dssp BTTTTB----------SHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEEEESCEET
T ss_pred ecccCC----------CHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEEecCeEcC
Confidence 998887 8999999999999987532 14688888888754 4678999999999999999
Q ss_pred CCEEEEeecCCCeeEEEEEEEEc----ceecceeecCCeEEEEecCCCccCcccceEEeCCCC
Q psy15224 151 GEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 209 (502)
Q Consensus 151 gd~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 209 (502)
||+|++.+ .+...+|.+++.+ ++++++|.|||+|++ .+ ..+++.||+|++.+.
T Consensus 328 g~~v~~~~--~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~~--l~~~~~Gdtl~~~~~ 384 (529)
T 2h5e_A 328 GMKLRQVR--TAKDVVISDALTFMAGDRSHVEEAYPGDILGL--HN--HGTIQIGDTFTQGEM 384 (529)
T ss_dssp TCEEEETT--TTEEEECSCEECCCC-----CCEECTTCEEEE--CC--SSCCCTTCEEESSCC
T ss_pred CCEEEEee--CCCEEEeceeeEEeCCCceEcceECCCCEEEE--ec--cCCCccCCEeecCCc
Confidence 99999876 4577899999975 468999999999999 44 467888999998653
No 31
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.81 E-value=5.3e-19 Score=191.75 Aligned_cols=188 Identities=23% Similarity=0.280 Sum_probs=149.7
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhc------------
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY------------ 70 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~------------ 70 (502)
.++..+|++|+|+|+.+|...||.+++..+...++|.+++ +||||+... .++++.+++...+..-
T Consensus 101 ~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilv-iNKiD~~~~--~~~~~~~~l~~~l~~~~~~~~~Pi~~~~ 177 (704)
T 2rdo_7 101 RSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAF-VNKMDRMGA--NFLKVVNQIKTRLGANPVPLQLAIGAEE 177 (704)
T ss_pred HHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEE-EeCCCcccc--cHHHHHHHHHHHhCCCceeEEccccccc
Confidence 4567899999999999999999999999999999997766 999999764 1233333444333210
Q ss_pred ---------------------C---------------------------------------------------------C
Q psy15224 71 ---------------------E---------------------------------------------------------F 72 (502)
Q Consensus 71 ---------------------~---------------------------------------------------------~ 72 (502)
+ .
T Consensus 178 ~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~ 257 (704)
T 2rdo_7 178 HFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVL 257 (704)
T ss_pred cccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 0 0
Q ss_pred CCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCC--------------------CCCCCeeEEEeEEEee
Q psy15224 73 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR--------------------AIDGAFLLPVEDVFSI 132 (502)
Q Consensus 73 ~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~--------------------~~~~p~~~~v~~~~~~ 132 (502)
....+|+++.||+++. ++..||+.+.+++|+|.. +.+.|+.+.|++++.+
T Consensus 258 ~~~~~Pv~~gSa~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d 327 (704)
T 2rdo_7 258 NNEIILVTCGSAFKNK----------GVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATD 327 (704)
T ss_pred hCCeeEEEEeecccCc----------cHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEEEc
Confidence 0113688899999887 899999999999998743 1467999999999999
Q ss_pred CCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEc----ceecceeecCCeEEEEecCCCccCcccceEEeCCC
Q psy15224 133 SGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 208 (502)
Q Consensus 133 ~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 208 (502)
++.|++++|||+||+|+.||+|+..+ .+...+|.+|+.+ ..++++|.|||++++ .|+ .++++|++|++.+
T Consensus 328 ~~~G~~~~~RV~sG~l~~g~~v~~~~--~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i--~gl--~~~~~GdTl~~~~ 401 (704)
T 2rdo_7 328 PFVGNLTFFRVYSGVVNSGDTVLNSV--KAARERFGRIVQMHANKREEIKEVRAGDIAAA--IGL--KDVTTGDTLCDPD 401 (704)
T ss_pred CCCceEEEEEEEeeeecCCCEEEeCC--CCcEEEeceEEEEeCCCceEcceeCCCCEEEE--eCc--ccCccCCEEeCCC
Confidence 99999999999999999999998764 3467889998865 368999999999999 454 4679999999865
Q ss_pred C
Q psy15224 209 S 209 (502)
Q Consensus 209 ~ 209 (502)
.
T Consensus 402 ~ 402 (704)
T 2rdo_7 402 A 402 (704)
T ss_pred c
Confidence 4
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.81 E-value=2.9e-21 Score=201.51 Aligned_cols=192 Identities=25% Similarity=0.256 Sum_probs=147.5
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
|..+++.+|+++||+|+++|.++||.+|+..+...++|. |+|+||+|+.+... +.+..++..+-.........++++
T Consensus 69 ~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPi-IVViNKiDl~~~~~--~~v~~~l~~~~~~~e~~~~~~~iv 145 (537)
T 3izy_P 69 RARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPI-VLAINKCDKAEADP--EKVKKELLAYDVVCEDYGGDVQAV 145 (537)
T ss_dssp BBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCE-EECCBSGGGTTTSC--CSSSSHHHHTTSCCCCSSSSEEEC
T ss_pred HHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcE-EEEEecccccccch--HHHHHHHHhhhhhHHhcCCCceEE
Confidence 346889999999999999999999999999999999995 55599999975310 011112221110011111246899
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCC--CCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEee
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIP--TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIG 158 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p--~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p 158 (502)
++||++|. ++.+|++.+...++ ++....+.|++++|.+++.+++.|++++|+|.+|+|++||.+..
T Consensus 146 ~vSAktG~----------GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~-- 213 (537)
T 3izy_P 146 HVSALTGE----------NMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVA-- 213 (537)
T ss_dssp CCCSSSSC----------SSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECC--
T ss_pred EEECCCCC----------CchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEe--
Confidence 99999997 88888888876543 34455678999999999999999999999999999999998743
Q ss_pred cCCCeeEEEEEEEEcc-eecceeecCCeEEEEecCCCccCcccceEEeCCCCCCc
Q psy15224 159 IKDTVKTTCTGVEMFR-KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKP 212 (502)
Q Consensus 159 ~~~~~~~~V~~i~~~~-~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~ 212 (502)
+....+|++|+.++ .++++|.||+.|++ .|++ ....+|++++..++...
T Consensus 214 --g~~~~kVr~i~~~~g~~v~~A~~G~~V~i--~g~~-~~~~~Gd~l~~~~~~~~ 263 (537)
T 3izy_P 214 --GKSWAKVRLMFDENGRAVNEAYPSMPVGI--IGWR-DLPSAGDEILEVESEPR 263 (537)
T ss_dssp --SSCCEEEEEEEECCCCCSCCSCCSTTCCC--CSSE-EEEEEESSCCSCCSSCC
T ss_pred --CCceEEEEEEEcCCCCCCcEEcCCCEEEE--ECCC-CCCCCCCEEEecCChHH
Confidence 22458999999986 78999999999998 5655 44589999998766533
No 33
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.80 E-value=2.4e-18 Score=186.40 Aligned_cols=188 Identities=22% Similarity=0.239 Sum_probs=149.3
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhc-------------
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY------------- 70 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~------------- 70 (502)
++..+|++|+|+|+.+|...||.+++..+...++|.+++ +||+|+...+ ++.+.+++.+.+...
T Consensus 97 ~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivv-iNKiD~~~~~--~~~~~~~l~~~l~~~~~~~~~Pi~~~~~ 173 (691)
T 1dar_A 97 SMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF-ANKMDKTGAD--LWLVIRTMQERLGARPVVMQLPIGREDT 173 (691)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEE-EECTTSTTCC--HHHHHHHHHHTTCCCEEECEEEESCGGG
T ss_pred HHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEE-EECCCcccCC--HHHHHHHHHHHhCCCccceeccccCCCc
Confidence 466799999999999999999999999999999997666 9999997641 222333333332100
Q ss_pred -------------------C---------------------------------------------------------CCC
Q psy15224 71 -------------------E---------------------------------------------------------FPG 74 (502)
Q Consensus 71 -------------------~---------------------------------------------------------~~~ 74 (502)
+ ...
T Consensus 174 ~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~ 253 (691)
T 1dar_A 174 FSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDL 253 (691)
T ss_dssp CCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT
T ss_pred ccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhC
Confidence 0 001
Q ss_pred CCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCC------------------CCCCCeeEEEeEEEeeCCCe
Q psy15224 75 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR------------------AIDGAFLLPVEDVFSISGRG 136 (502)
Q Consensus 75 ~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~------------------~~~~p~~~~v~~~~~~~~~G 136 (502)
..+|++++||++|. ++..||+.+.+++|+|.. +.+.|+.+.|++++.+++.|
T Consensus 254 ~~~Pv~~gSA~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G 323 (691)
T 1dar_A 254 KITPVFLGSALKNK----------GVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVG 323 (691)
T ss_dssp SCEEEEECBGGGTB----------SHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTE
T ss_pred cEeEEEEeecccCc----------CHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcCCCC
Confidence 12689999999987 899999999999998754 25789999999999999999
Q ss_pred EEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc----eecceeecCCeEEEEecCCCccCcccceEEeCCCCC
Q psy15224 137 TVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 210 (502)
Q Consensus 137 ~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 210 (502)
++++|||+||+|+.||+|+... .+...+|..|...+ .++++|.|||++++ .|+ .++..||+|++.+.+
T Consensus 324 ~~~~~RV~sG~l~~g~~v~~~~--~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~~~Gdtl~~~~~~ 395 (691)
T 1dar_A 324 RLTFIRVYSGTLTSGSYVYNTT--KGRKERVARLLRMHANHREEVEELKAGDLGAV--VGL--KETITGDTLVGEDAP 395 (691)
T ss_dssp EEEEEEEEESEEESSCEEEETT--TTEEEECCEEEEECSSCEEEESEEETTCEEEE--ECC--SSCCTTCEEEETTCC
T ss_pred cEEEEEEeeeeEecCCEEEecC--CCcEEEEceEEEEeCCCceEcceecCCCEEEE--eCc--ccCccCCEEecCCCc
Confidence 9999999999999999998753 45677888888764 58999999999999 454 456789999986543
No 34
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.80 E-value=2e-19 Score=194.18 Aligned_cols=185 Identities=23% Similarity=0.258 Sum_probs=147.7
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHh--------------
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN-------------- 68 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~-------------- 68 (502)
.+++.+|.++||+|+.+|+..||++++..+...++|.+++ +||||+. . . ++++.+++.+.+.
T Consensus 93 ~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv-~NKiD~~-~-~-~~~~~~~l~~~l~~~~~~~~Pi~~~~~ 168 (665)
T 2dy1_A 93 GALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVV-VTKLDKG-G-D-YYALLEDLRSTLGPILPIDLPLYEGGK 168 (665)
T ss_dssp HHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEE-EECGGGC-C-C-HHHHHHHHHHHHCSEEECEEEEEETTE
T ss_pred HHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEE-ecCCchh-h-h-HHHHHHHHHHHhCCcceEEeeecCCCc
Confidence 4567899999999999999999999999999999997766 9999997 3 1 1222233333222
Q ss_pred ---------------------------------------------------------hcC--------------CCCCCC
Q psy15224 69 ---------------------------------------------------------KYE--------------FPGNDI 77 (502)
Q Consensus 69 ---------------------------------------------------------~~~--------------~~~~~~ 77 (502)
... .....+
T Consensus 169 ~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~~~~~ 248 (665)
T 2dy1_A 169 WVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRGLLY 248 (665)
T ss_dssp EEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCE
T ss_pred ccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCee
Confidence 000 001236
Q ss_pred eEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCCC-CCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEE
Q psy15224 78 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRA-IDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEI 156 (502)
Q Consensus 78 ~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~~-~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i 156 (502)
|++++||++|. ++.+|++.+.+++|+|... .+.|+.+.|++++.+++.|++++|||+||+|+.||+|+.
T Consensus 249 pv~~~SA~~~~----------Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~ 318 (665)
T 2dy1_A 249 PVALASGEREI----------GVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQS 318 (665)
T ss_dssp EEEECBTTTTB----------SHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBC
T ss_pred EEEEeecccCc----------CHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCEEEc
Confidence 89999999987 8999999999999987643 678999999999999999999999999999999999986
Q ss_pred eecCCCeeEEEEEEEEc----ceecceeecCCeEEEEecCCCccCcccceEEeCCCC
Q psy15224 157 IGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 209 (502)
Q Consensus 157 ~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 209 (502)
.+ ...+|.+|+.+ ..++++|.|||++++ .|+ .++.+||+|++.+.
T Consensus 319 ~~----~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i--~gl--~~~~~Gdtl~~~~~ 367 (665)
T 2dy1_A 319 EA----GQVRLPHLYVPMGKDLLEVEEAEAGFVLGV--PKA--EGLHRGMVLWQGEK 367 (665)
T ss_dssp TT----SCEEESSEEEEETTEEEEESCEETTCEEEE--SSC--TTCCTTCEEESSSC
T ss_pred CC----CeEEEeEEEEEeCCCeeECCEECCCCEEEE--eCC--ccCccCCEEecCCC
Confidence 53 55788888864 358999999999999 454 46789999998654
No 35
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.79 E-value=2.4e-19 Score=185.47 Aligned_cols=185 Identities=24% Similarity=0.226 Sum_probs=141.8
Q ss_pred CccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCC----CC
Q psy15224 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG----ND 76 (502)
Q Consensus 1 mi~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~----~~ 76 (502)
|..+++.+|+++||+||++|.++||.+|+..+...++| +|+++||||+.+++. + ++...+...++.. ..
T Consensus 68 ~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~--~----~v~~~l~~~~~~~~~~~~~ 140 (501)
T 1zo1_I 68 RARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADP--D----RVKNELSQYGILPEEWGGE 140 (501)
T ss_dssp BCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCC--C----CTTCCCCCCCCCTTCCSSS
T ss_pred HHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEeccccccCH--H----HHHHHHHHhhhhHHHhCCC
Confidence 35688999999999999999999999999999999999 555699999976410 0 1111121111111 24
Q ss_pred CeEEEccccccccCCCCCCCcccHHHHHHHHhhcC--CCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEE
Q psy15224 77 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI--PTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEEL 154 (502)
Q Consensus 77 ~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~--p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v 154 (502)
+|++++||++|. ++.+|++.|.... +.+....+.|+.+.|.+++.+++.|++++|+|.+|+|++||.+
T Consensus 141 ~~~v~vSAktG~----------gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v 210 (501)
T 1zo1_I 141 SQFVHVSAKAGT----------GIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIV 210 (501)
T ss_dssp CEEEECCTTTCT----------TCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEE
T ss_pred ccEEEEeeeecc----------CcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEE
Confidence 799999999998 7888999886532 2333455778899999999999999999999999999999999
Q ss_pred EEeecCCCeeEEEEEEEEc-ceecceeecCCeEEEEecCCCccCcccceEEeCCCC
Q psy15224 155 EIIGIKDTVKTTCTGVEMF-RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 209 (502)
Q Consensus 155 ~i~p~~~~~~~~V~~i~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 209 (502)
.+.+ ...+|++++.. +.++++|.||+.+.+. |++ .....|++++...+
T Consensus 211 ~~g~----~~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~-~~~~~Gd~~~~~~~ 259 (501)
T 1zo1_I 211 LCGF----EYGRVRAMRNELGQEVLEAGPSIPVEIL--GLS-GVPAAGDEVTVVRD 259 (501)
T ss_dssp EEEB----SSCEEEEECCTTTTSEEEECCSSCSSSE--EEC-SCCCTTEEEEEECS
T ss_pred EEcc----ceeEEEEEEecCCCcCcEeccCCcEEEe--CCC-CCCCCCCEEEecCC
Confidence 8764 34689999865 5789999999998873 443 23478999975543
No 36
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.78 E-value=3.9e-18 Score=184.81 Aligned_cols=187 Identities=22% Similarity=0.270 Sum_probs=149.1
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhc-------------
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY------------- 70 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~------------- 70 (502)
++..+|++|+|+|+.+|...||..++..+...++|.+++ +||+|+... + ++.+.+++...+...
T Consensus 95 ~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilv-iNK~Dl~~~-~-~~~~~~~l~~~l~~~~~~~~ipisa~~~ 171 (693)
T 2xex_A 95 SLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVF-VNKMDKLGA-N-FEYSVSTLHDRLQANAAPIQLPIGAEDE 171 (693)
T ss_dssp HHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEE-EECTTSTTC-C-HHHHHHHHHHHHCCCEEESEEEECCGGG
T ss_pred HHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEE-EECCCcccc-c-hHHHHHHHHHHhCCCceeEEeecccCCC
Confidence 456799999999999999999999999999999997666 999999764 1 223333444443210
Q ss_pred -------------CCC---------------------------------------------------------------C
Q psy15224 71 -------------EFP---------------------------------------------------------------G 74 (502)
Q Consensus 71 -------------~~~---------------------------------------------------------------~ 74 (502)
.|. .
T Consensus 172 ~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~ 251 (693)
T 2xex_A 172 FEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQATTNV 251 (693)
T ss_dssp CCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred cceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 000 1
Q ss_pred CCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCCCC--------------------CCCCCeeEEEeEEEeeCC
Q psy15224 75 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR--------------------AIDGAFLLPVEDVFSISG 134 (502)
Q Consensus 75 ~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~~--------------------~~~~p~~~~v~~~~~~~~ 134 (502)
..+|+++.||++|. ++..||+.+.+++|+|.. +.+.||.+.|++++.+++
T Consensus 252 ~~~Pv~~gSA~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~ 321 (693)
T 2xex_A 252 EFYPVLCGTAFKNK----------GVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPY 321 (693)
T ss_dssp SCEEEEECBTTTTB----------SHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETT
T ss_pred CeeeEEEeecccCc----------CHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCC
Confidence 12588999999887 899999999999998743 257899999999999999
Q ss_pred CeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc----eecceeecCCeEEEEecCCCccCcccceEEeCCCC
Q psy15224 135 RGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 209 (502)
Q Consensus 135 ~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 209 (502)
.|++++|||+||+|+.||+|+.. ..+...+|.+|+.++ .++++|.|||++++. |+ .++..|++|++.+.
T Consensus 322 ~g~~~~~RV~sG~l~~g~~v~~~--~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~GdTl~~~~~ 394 (693)
T 2xex_A 322 VGKLTFFRVYSGTMTSGSYVKNS--TKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAV--GL--KDTGTGDTLCGEKN 394 (693)
T ss_dssp TEEEEEEEEEESEEETTEEEEET--TTTEEEEECCEEEECSSCEEECSEEETTCEEEEE--SC--SSCCTTCEEEETTC
T ss_pred CceEEEEEEEeeeEecCCEEEec--CCCceEEeceEEEEeCCCceEccccCcCCEEEEe--Cc--ccCccCCEEecCCC
Confidence 99999999999999999999865 345778899988764 589999999999994 54 45788999997653
No 37
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.77 E-value=8.7e-21 Score=203.88 Aligned_cols=189 Identities=20% Similarity=0.234 Sum_probs=145.5
Q ss_pred ccccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh--HHHHHHHHHHH----------------
Q psy15224 2 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEI---------------- 63 (502)
Q Consensus 2 i~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~--~~~~~~i~~~i---------------- 63 (502)
..|++.+|.|||||||.+|+++||+.++.+|..+++|.+++ |||||+... +..++++.+.+
T Consensus 85 ~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~-INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 163 (638)
T 3j25_A 85 YRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFF-INKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNV 163 (638)
T ss_dssp HHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEEC-CEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSCGGG
T ss_pred HHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEE-EeccccccCCHHHHHHHHHHHhCCCccccceeEeeccc
Confidence 46889999999999999999999999999999999998776 999998653 22222221111
Q ss_pred ----------------------HHHHhhcCC--------------CCCCCeEEEccccccccCCCCCCCcccHHHHHHHH
Q psy15224 64 ----------------------RELLNKYEF--------------PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKAL 107 (502)
Q Consensus 64 ----------------------~~~l~~~~~--------------~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l 107 (502)
..++..-.+ .....|+++.||+++. ++..||+.+
T Consensus 164 ~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~----------Gv~~LLd~i 233 (638)
T 3j25_A 164 CVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNI----------GIDNLIEVI 233 (638)
T ss_dssp CCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCC----------SHHHHHHHH
T ss_pred cccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCC----------CchhHhhhh
Confidence 001100000 0123688899999887 899999999
Q ss_pred hhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcc----eecceeecC
Q psy15224 108 DTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAG 183 (502)
Q Consensus 108 ~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG 183 (502)
.+++|+|....+.|+.+.|+++..+++.|+++++||+||+|+.||+|++.. ..+.++..++... .++++|.||
T Consensus 234 ~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~---~~~~~v~~l~~~~g~~~~~v~~a~aG 310 (638)
T 3j25_A 234 TNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSE---KEKIKVTEMYTSINGELCKIDRAYSG 310 (638)
T ss_dssp HHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCC---CCCSSBCCCCSSCCCCBSCCCTTBCC
T ss_pred hccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCcccccc---CcceeEEeeecccccccccccccccc
Confidence 999999988888999999999999999999999999999999999997653 2334566655442 578999999
Q ss_pred CeEEEEecCCCccCcccceEEeCCCC
Q psy15224 184 DNIGLLLRGTKREDVERGQVLAKPGS 209 (502)
Q Consensus 184 ~~v~l~l~~~~~~~i~~G~vl~~~~~ 209 (502)
|++++ .| ..++.|+++++...
T Consensus 311 dIv~i--~g---~~~~~~~tl~d~~~ 331 (638)
T 3j25_A 311 EIVIL--QN---EFLKLNSVLGDTKL 331 (638)
T ss_dssp CCSCC--CS---SSCSSEECSSSSSS
T ss_pred eEEEE--ec---cccccCceecCCCC
Confidence 99887 43 45677888876643
No 38
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=99.75 E-value=1e-18 Score=138.03 Aligned_cols=84 Identities=29% Similarity=0.458 Sum_probs=74.9
Q ss_pred ccccceEEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEEeCccceeee
Q psy15224 325 NNKKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLV 404 (502)
Q Consensus 325 ~~~~~WYvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i 404 (502)
-++.+||++||++|+|++|+++|++++...+++ ++++++|. .|||||||++++.++.|+.+
T Consensus 7 v~d~~WYvv~~~sG~E~~V~~~L~~~~~~~~l~--i~~v~vP~-----------------~fPGYVfVe~~~~~~~~~~I 67 (92)
T 3lpe_A 7 VGAHMIFAVRTMVGQEKNIAGLMASRAEKEQLD--VYSILASE-----------------SLKGYVLVEAETKGDVEELI 67 (92)
T ss_dssp --CCCEEEEEECTTCHHHHHHHHHHHHHHTTCC--EEEEEECT-----------------TSTTEEEEEESSHHHHHHHH
T ss_pred CCCCeEEEEEEECChHHHHHHHHHHHHHhcCCc--EEEEEEec-----------------ccCCEEEEEEecchhHHHHH
Confidence 455789999999999999999999998888875 77888885 29999999999999999999
Q ss_pred eccCCeeEeccCCCCcceeCCHHHHHHHH
Q psy15224 405 KNTKKVTGFIGGKSNRPTPISSKEIEEIL 433 (502)
Q Consensus 405 ~~~~~v~~~l~~~~~~p~~v~~~ei~~~~ 433 (502)
+++|||.+|++. |++++|++.|+
T Consensus 68 ~~t~gV~gfvg~------pl~~~Ev~~il 90 (92)
T 3lpe_A 68 KGMPRVRGIVPG------TIAIEEIEPLL 90 (92)
T ss_dssp TTCTTEEEECSS------CCCHHHHHHHH
T ss_pred HCCCCceEeCCC------CCCHHHHHHHh
Confidence 999999999974 89999999875
No 39
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.65 E-value=1.2e-15 Score=168.63 Aligned_cols=203 Identities=22% Similarity=0.248 Sum_probs=147.7
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC------hH---HHHHHHHHHHHHHHhhc---
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD------DE---ELLELVEIEIRELLNKY--- 70 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~------~~---~~~~~i~~~i~~~l~~~--- 70 (502)
.++..+|++|+|+|+.+|...||..++..+...++|.+++ +||||+.. .+ ..++.+.+++...+..+
T Consensus 117 ~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilv-iNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~ 195 (842)
T 1n0u_A 117 AALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVV-INKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADE 195 (842)
T ss_dssp HHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEE-EECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCG
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEE-EECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3567899999999999999999999999998999997665 99999862 22 23555666666666431
Q ss_pred --C---CCCCCCeEEEccccccccC---------------C------CCC---C-C------------------------
Q psy15224 71 --E---FPGNDIPIIKGSAKLALEG---------------D------TGP---L-G------------------------ 96 (502)
Q Consensus 71 --~---~~~~~~~ii~iSa~~g~~~---------------~------~~w---~-~------------------------ 96 (502)
+ +.....++...||++|++. + ..| | .
T Consensus 196 ~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~ 275 (842)
T 1n0u_A 196 VLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNM 275 (842)
T ss_dssp GGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHH
T ss_pred ccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHH
Confidence 1 3222345777899776420 0 023 1 0
Q ss_pred ----------------------------ccc------------------------HHHHHHHHhhcCCCCC---------
Q psy15224 97 ----------------------------EQS------------------------ILSLSKALDTYIPTPN--------- 115 (502)
Q Consensus 97 ----------------------------~~~------------------------i~~Ll~~l~~~~p~~~--------- 115 (502)
|.. +..||+.+.+++|+|.
T Consensus 276 ~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~ 355 (842)
T 1n0u_A 276 FILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQ 355 (842)
T ss_dssp HTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHHHHHHHHhCCChhHhccccccc
Confidence 000 2678899999999774
Q ss_pred ----------------CCCCCCeeEEEeEEEeeCCCeE-EEEEEEEEeeeecCCEEEEeecC----CCe---eEEEEEEE
Q psy15224 116 ----------------RAIDGAFLLPVEDVFSISGRGT-VVTGRVERGIVRVGEELEIIGIK----DTV---KTTCTGVE 171 (502)
Q Consensus 116 ----------------~~~~~p~~~~v~~~~~~~~~G~-v~~g~v~sG~l~~gd~v~i~p~~----~~~---~~~V~~i~ 171 (502)
++.+.|+.+.|++++..++.|+ ++++||+||+|+.||+|++...+ .+. ..+|.+|+
T Consensus 356 ~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~ 435 (842)
T 1n0u_A 356 LYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVV 435 (842)
T ss_dssp HBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEE
T ss_pred ccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeE
Confidence 2457899999999999999995 99999999999999999876432 122 57888988
Q ss_pred Ecc----eecceeecCCeEEEEecCCCccCcccceEEeCCCC
Q psy15224 172 MFR----KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 209 (502)
Q Consensus 172 ~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 209 (502)
.++ .++++|.|||+|++ .|++...+..| +|++.+.
T Consensus 436 ~~~g~~~~~v~~~~aGdI~ai--~gl~~~~~~t~-Tl~~~~~ 474 (842)
T 1n0u_A 436 LMMGRFVEPIDDCPAGNIIGL--VGIDQFLLKTG-TLTTSET 474 (842)
T ss_dssp EEETTEEEEESEEETTCEEEE--ESCTTTCCSSE-EEESCTT
T ss_pred eeccCcccccceeCCCCEEEE--Eccccceecce-eecCCCC
Confidence 774 68999999999999 66654444555 8887543
No 40
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=99.50 E-value=5.7e-14 Score=100.89 Aligned_cols=55 Identities=51% Similarity=0.910 Sum_probs=53.0
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEeC
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 502 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~~ 502 (502)
.|++||.|+|++|||+|++|.|.+++.+++++.|.+++|||.+++++++++|+++
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~vek~ 58 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVKA 58 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEEC
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHEEEC
Confidence 5889999999999999999999999998899999999999999999999999985
No 41
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=3.6e-12 Score=91.14 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=50.6
Q ss_pred cccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEeC
Q psy15224 447 ILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 502 (502)
Q Consensus 447 ~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~~ 502 (502)
..|++||.|+|++|||+|++|+|.++|. . +++|++.+||+.++++++.+||+|.
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd~-e-~v~V~v~~fg~~tpvel~~~qv~K~ 59 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSVDG-N-KITIMPKHEDLKDMLEFPAQELRKY 59 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCCBT-T-EEEEEECCSSCCSCEEEETTTEEEC
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEEeC-C-EEEEEEEecCCCceEEEcHHHEEEC
Confidence 4689999999999999999999999996 3 9999999999999999999999984
No 42
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=98.99 E-value=7.8e-09 Score=83.04 Aligned_cols=83 Identities=30% Similarity=0.391 Sum_probs=69.1
Q ss_pred CCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCCccC
Q psy15224 118 IDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKRED 197 (502)
Q Consensus 118 ~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~ 197 (502)
...|..+.|..++..=. |+++.|+|++|+|++|+.| |.+. ...+|+||+++++++++|.+||.|+++++|.+. +
T Consensus 31 ~~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~-~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~ 104 (116)
T 1xe1_A 31 KKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPS-GIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-K 104 (116)
T ss_dssp SSCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSS-CEEEEEEEEETTEEESEEETTCEEEEEEESCCC-C
T ss_pred ecCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCc-eEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-c
Confidence 34677777777444333 8899999999999999998 6331 578899999999999999999999999999776 8
Q ss_pred cccceEEeC
Q psy15224 198 VERGQVLAK 206 (502)
Q Consensus 198 i~~G~vl~~ 206 (502)
++.|++|..
T Consensus 105 I~~GdVLyv 113 (116)
T 1xe1_A 105 VKKGDVLEI 113 (116)
T ss_dssp CCTTCEEEE
T ss_pred cCCCcEEEE
Confidence 999999863
No 43
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.70 E-value=3.3e-08 Score=91.48 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=71.4
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhc---CCCCCCCeEEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY---EFPGNDIPIIK 81 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~---~~~~~~~~ii~ 81 (502)
+..+|++++|+|+.++....+.+++..+...++|.++| +||+|+.+. .......+++...+..+ +. ....++++
T Consensus 113 ~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v-~nK~Dl~~~-~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~ 189 (223)
T 4dhe_A 113 RPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSL-LTKCDKLTR-QESINALRATQKSLDAYRDAGY-AGKLTVQL 189 (223)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEE-EECGGGSCH-HHHHHHHHHHHHHHHHHHHHTC-CSCEEEEE
T ss_pred CcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEE-EeccccCCh-hhHHHHHHHHHHHHHhhhhccc-CCCCeEEE
Confidence 44589999999999999888888888888889996655 999999885 22233333444444432 11 12478999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcCCCCC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN 115 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~~ 115 (502)
+||++|. ++.+|++.|.+.++.+.
T Consensus 190 ~SA~~g~----------gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 190 FSALKRT----------GLDDAHALIESWLRPAA 213 (223)
T ss_dssp EBTTTTB----------SHHHHHHHHHHHHC---
T ss_pred eecCCCc----------CHHHHHHHHHHhcCccC
Confidence 9999987 89999999988877543
No 44
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.63 E-value=4.2e-08 Score=101.33 Aligned_cols=91 Identities=23% Similarity=0.286 Sum_probs=70.0
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
++..||++++|+|+.+++..|+.+++..+...++|.++ |+||+|+.+. +..+++..+.+...+...++ .|++++
T Consensus 274 ~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~il-v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 348 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVI-VVNKWDAVDKDESTMKEFEENIRDHFQFLDY----APILFM 348 (456)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEE-EEECGGGSCCCSSHHHHHHHHHHHHCGGGTT----SCEEEC
T ss_pred HHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEE-EEEChhcCCCchHHHHHHHHHHHHhcccCCC----CCEEEE
Confidence 45679999999999999999999999999999988555 4999999864 33455566666666654443 689999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
||++|. ++.+|++.+.+
T Consensus 349 SA~~g~----------gv~~l~~~i~~ 365 (456)
T 4dcu_A 349 SALTKK----------RIHTLMPAIIK 365 (456)
T ss_dssp CTTTCT----------TGGGHHHHHHH
T ss_pred cCCCCc----------CHHHHHHHHHH
Confidence 999987 55555555543
No 45
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.61 E-value=1.3e-07 Score=85.22 Aligned_cols=93 Identities=19% Similarity=0.225 Sum_probs=72.3
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
++..+|++++|+|+..+...+..+.+..+...++|.++| +||+|+.+. +..+...+++..++...+ ..+++++|
T Consensus 101 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v-~nK~Dl~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~S 174 (195)
T 3pqc_A 101 NRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIV-LTKMDKVKM-SERAKKLEEHRKVFSKYG----EYTIIPTS 174 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEE-EECGGGSCG-GGHHHHHHHHHHHHHSSC----CSCEEECC
T ss_pred cCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEE-EEChhcCCh-HHHHHHHHHHHHHHhhcC----CCceEEEe
Confidence 345679999999999988888888888888889996655 999999875 223444556666666443 36899999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
|++|. ++.++++.|.+.++
T Consensus 175 a~~~~----------gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 175 SVTGE----------GISELLDLISTLLK 193 (195)
T ss_dssp TTTCT----------THHHHHHHHHHHHC
T ss_pred cCCCC----------CHHHHHHHHHHHhh
Confidence 99987 89999999877553
No 46
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.60 E-value=1.4e-08 Score=99.24 Aligned_cols=110 Identities=22% Similarity=0.238 Sum_probs=77.9
Q ss_pred ccccCCEEEEEEECCCCCCcchHHH-HHHHHHhCCCeEEEEEEcCCCC-ChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREH-ILLARQVGVPYIVVFLNKADMV-DDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~-l~~~~~~~i~~iiv~iNK~D~~-~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
.+..+|++++|+|+.++...++.++ +..+...++|.++| +||+|+. +. +......+++ .+.++ ...++++
T Consensus 89 ~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV-~NK~Dl~~~~-~~~~~~~~~l---~~~~~---~~~~i~~ 160 (308)
T 3iev_A 89 SLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV-INKIDKIGPA-KNVLPLIDEI---HKKHP---ELTEIVP 160 (308)
T ss_dssp HHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEE-EECGGGSSSG-GGGHHHHHHH---HHHCT---TCCCEEE
T ss_pred HhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEE-EECccCCCCH-HHHHHHHHHH---HHhcc---CCCeEEE
Confidence 4567999999999999999999888 78888889996665 9999998 43 3223222333 33332 1357999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcCCCC------CCCCCCCeeEEEeEEEe
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYIPTP------NRAIDGAFLLPVEDVFS 131 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~------~~~~~~p~~~~v~~~~~ 131 (502)
+||++|. ++.+|++.+.+.++.. +...+.+.++.+.+.++
T Consensus 161 vSA~~g~----------gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~ir 206 (308)
T 3iev_A 161 ISALKGA----------NLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVR 206 (308)
T ss_dssp CBTTTTB----------SHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHH
T ss_pred EeCCCCC----------CHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHH
Confidence 9999987 8999999998888632 22344555555554443
No 47
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.58 E-value=7.3e-08 Score=98.94 Aligned_cols=81 Identities=22% Similarity=0.262 Sum_probs=63.1
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
++..||+++||+|+.+|.+.|+.+++..+...+.+.++ |+||+|+.+. +..+++..+++...+.... ..|++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iii-v~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVI-VVNKWDAVDKDESTMKEFEENIRDHFQFLD----YAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEE-EEECGGGSCCCTTHHHHHHHHHHHHCGGGT----TSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEE-EEECccCCCcchHHHHHHHHHHHHhcccCC----CCCEEEE
Confidence 56679999999999999999999999888888988555 5999999874 2234455556666555433 3689999
Q ss_pred ccccccc
Q psy15224 83 SAKLALE 89 (502)
Q Consensus 83 Sa~~g~~ 89 (502)
||++|.+
T Consensus 329 SA~tg~~ 335 (436)
T 2hjg_A 329 SALTKKR 335 (436)
T ss_dssp CTTTCTT
T ss_pred ecccCCC
Confidence 9999984
No 48
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.47 E-value=5e-07 Score=81.42 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=67.2
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
+..+|++++|+|+..+...+..+.+..+...++|.++| +||+|+.+..+ .+...+++.+.+. .. ...+++++||
T Consensus 103 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v-~nK~Dl~~~~~-~~~~~~~~~~~~~---~~-~~~~~~~~Sa 176 (195)
T 1svi_A 103 REELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVI-ATKADKIPKGK-WDKHAKVVRQTLN---ID-PEDELILFSS 176 (195)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEE-EECGGGSCGGG-HHHHHHHHHHHHT---CC-TTSEEEECCT
T ss_pred hhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEE-EECcccCChHH-HHHHHHHHHHHHc---cc-CCCceEEEEc
Confidence 34569999999999998888877778888888886555 99999988522 2333344544443 11 2478999999
Q ss_pred cccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 85 KLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 85 ~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++|. ++.+|++.|.+.+
T Consensus 177 ~~~~----------gv~~l~~~l~~~l 193 (195)
T 1svi_A 177 ETKK----------GKDEAWGAIKKMI 193 (195)
T ss_dssp TTCT----------THHHHHHHHHHHH
T ss_pred cCCC----------CHHHHHHHHHHHh
Confidence 9987 8999999887644
No 49
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.46 E-value=8e-07 Score=86.43 Aligned_cols=91 Identities=20% Similarity=0.288 Sum_probs=69.5
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
.++..+|++++|+|+.. +.+++++.+..+...+.|.+++ +||+|+.+..+.+ .+.+..+.+.+++ .+++|+
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilv-lNK~D~~~~~~~~---~~~l~~l~~~~~~----~~~i~i 154 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILA-VNKVDNVQEKADL---LPHLQFLASQMNF----LDIVPI 154 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEE-EESTTTCCCHHHH---HHHHHHHHTTSCC----SEEEEC
T ss_pred HHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEE-EECcccCccHHHH---HHHHHHHHHhcCc----CceEEE
Confidence 46788999999999988 8899998888777778997666 9999998731222 2233444443443 369999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
||.+|. ++.+|++.+.+.+|
T Consensus 155 SA~~g~----------~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 155 SAETGL----------NVDTIAAIVRKHLP 174 (301)
T ss_dssp CTTTTT----------THHHHHHHHHTTCC
T ss_pred ECCCCC----------CHHHHHHHHHHhCC
Confidence 999987 89999999988776
No 50
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.45 E-value=4.4e-07 Score=88.19 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=66.7
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
++..+|++++|+|++++...++...+..+... ++|.++| +||+|+.+.... +.+ .++.+ + ...+++|
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV-~NK~Dl~~~~~~---~~~----~~~~~-~--~~~~~~~ 151 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLV-GNKLDAAKYPEE---AMK----AYHEL-L--PEAEPRM 151 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEE-EECGGGCSSHHH---HHH----HHHHT-S--TTSEEEE
T ss_pred HHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEE-EECcccCCchHH---HHH----HHHHh-c--CcCcEEE
Confidence 46789999999999999888888777777777 8886665 999999875220 112 22222 1 2357999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+||++|. ++.+|++.+.+.+|
T Consensus 152 iSA~~g~----------gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 152 LSALDER----------QVAELKADLLALMP 172 (301)
T ss_dssp CCTTCHH----------HHHHHHHHHHTTCC
T ss_pred EeCCCCC----------CHHHHHHHHHHhcc
Confidence 9999987 89999999988775
No 51
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.41 E-value=1.2e-06 Score=77.48 Aligned_cols=90 Identities=34% Similarity=0.372 Sum_probs=65.5
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCC----CCCeE
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG----NDIPI 79 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~----~~~~i 79 (502)
.+..+|++++|+|++.+...++.+++..+...++|.++| +||+|+.+... + ++...+....... ...++
T Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv-~nK~Dl~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVA-INKMDKPEANP--D----RVMQELMEYNLVPEEWGGDTIF 147 (178)
T ss_dssp SCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEE-EETTTSSCSCH--H----HHHHHHTTTTCCBTTTTSSEEE
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEE-EECccCCcCCH--H----HHHHHHHhcCcChhHcCCcccE
Confidence 467899999999999999999999988888788996555 99999986411 1 1222233222211 12589
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++||++|. ++.+|++.|.+.
T Consensus 148 ~~~Sa~~~~----------gv~~l~~~l~~~ 168 (178)
T 2lkc_A 148 CKLSAKTKE----------GLDHLLEMILLV 168 (178)
T ss_dssp EECCSSSSH----------HHHHHHHHHHHH
T ss_pred EEEecCCCC----------CHHHHHHHHHHh
Confidence 999999987 888888887654
No 52
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.33 E-value=9.6e-07 Score=76.67 Aligned_cols=86 Identities=20% Similarity=0.162 Sum_probs=65.3
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
.+..+|++++|+|+..+......+....+...++|.++| +||+|+.+.++ ++.++. .+++ .+++++|
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv-~nK~Dl~~~~~-------~~~~~~-~~~~----~~~~~~S 142 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILV-ATKVDDPKHEL-------YLGPLY-GLGF----GDPIPTS 142 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEE-EECCCSGGGGG-------GCGGGG-GGSS----CSCEECB
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEE-EECcccccchH-------hHHHHH-hCCC----CCeEEEe
Confidence 356899999999999988877777778888889996555 99999976421 222233 3333 2689999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
|++|. ++.++++.+.+.+|
T Consensus 143 a~~~~----------gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 143 SEHAR----------GLEELLEAIWERLP 161 (161)
T ss_dssp TTTTB----------SHHHHHHHHHHHCC
T ss_pred cccCC----------ChHHHHHHHHHhCc
Confidence 99987 89999999887664
No 53
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.17 E-value=3.3e-06 Score=86.62 Aligned_cols=91 Identities=24% Similarity=0.227 Sum_probs=66.0
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChH-HHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE-ELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~-~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
+..+|++++++|+..+...|+.+....+...+.+.+++ +||+|+.+.+ ...++..+++...+..+. ..|++++|
T Consensus 261 i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv-~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~S 335 (439)
T 1mky_A 261 IEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVV-FNKWDLVVHREKRYDEFTKLFREKLYFID----YSPLIFTS 335 (439)
T ss_dssp HHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEE-EECGGGSTTGGGCHHHHHHHHHHHCGGGT----TSCEEECB
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEE-EECccCCCchhhHHHHHHHHHHHHhccCC----CCcEEEEE
Confidence 45689999999999999888887777788889885554 9999998642 123444444444444333 36899999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
|++|. ++.+|++.+.+.
T Consensus 336 A~~g~----------gv~~l~~~i~~~ 352 (439)
T 1mky_A 336 ADKGW----------NIDRMIDAMNLA 352 (439)
T ss_dssp TTTTB----------SHHHHHHHHHHH
T ss_pred CCCCC----------CHHHHHHHHHHH
Confidence 99998 777777776543
No 54
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.13 E-value=4.5e-06 Score=75.02 Aligned_cols=86 Identities=19% Similarity=0.294 Sum_probs=59.9
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHH---------hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQ---------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 75 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~---------~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 75 (502)
+..+|++++|+|++++...++.+.+..+.. .++|.++| .||+|+.+. . ..+++.++++..++
T Consensus 95 ~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv-~NK~Dl~~~-~----~~~~~~~~~~~~~~--- 165 (198)
T 3t1o_A 95 LRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQ-VNKRDLPDA-L----PVEMVRAVVDPEGK--- 165 (198)
T ss_dssp TTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEE-EECTTSTTC-C----CHHHHHHHHCTTCC---
T ss_pred HhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEE-EEchhcccc-c----CHHHHHHHHHhcCC---
Confidence 567999999999997666556555544332 47775555 999999764 1 11245556654443
Q ss_pred CCeEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 76 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 76 ~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
.+++++||++|. ++.++++.|.+.
T Consensus 166 -~~~~~~Sa~~~~----------gv~~l~~~l~~~ 189 (198)
T 3t1o_A 166 -FPVLEAVATEGK----------GVFETLKEVSRL 189 (198)
T ss_dssp -SCEEECBGGGTB----------THHHHHHHHHHH
T ss_pred -ceEEEEecCCCc----------CHHHHHHHHHHH
Confidence 379999999987 888888887654
No 55
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.11 E-value=3.9e-06 Score=75.09 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=59.4
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|+++... ....+.+..+.. .++|. ++++||+|+.+... .+ ++.+.+....+.....++
T Consensus 81 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~~~ 154 (187)
T 1zj6_A 81 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL-LIFANKQDVKECMT-VA----EISQFLKLTSIKDHQWHI 154 (187)
T ss_dssp HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEE-EEEEECTTSTTCCC-HH----HHHHHHTGGGCCSSCEEE
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeE-EEEEECCCCcCCCC-HH----HHHHHhChhhhcCCCcEE
Confidence 467999999999987643 223333333332 46664 55599999976311 11 233333322122234689
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
+++||++|. ++.++++.|.+.++.
T Consensus 155 ~~~Sa~~g~----------gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 155 QACCALTGE----------GLCQGLEWMMSRLKI 178 (187)
T ss_dssp EECBTTTTB----------THHHHHHHHHHHHCC
T ss_pred EEccCCCCc----------CHHHHHHHHHHHHHH
Confidence 999999987 899999998877654
No 56
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.09 E-value=6.8e-06 Score=84.26 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=65.9
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHH-HHHHhhcCCCCCCCeEEEc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEI-RELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i-~~~l~~~~~~~~~~~ii~i 82 (502)
++..||++++|+|+..|++..+.+....++..++|.+++ +||+|+.+. . + .++ .++. .+++ .+++++
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv-~NK~D~~~~--~-~---~~~~~~~~-~lg~----~~~~~i 145 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILV-ANKAENLRE--F-E---REVKPELY-SLGF----GEPIPV 145 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEE-EESCCSHHH--H-H---HHTHHHHG-GGSS----CSCEEC
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEE-EeCCCCccc--c-H---HHHHHHHH-hcCC----CCEEEE
Confidence 457899999999999999988888888888889996655 999998532 0 1 122 2332 4554 247899
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
||.+|. ++.+|++.+.+.+|
T Consensus 146 SA~~g~----------gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 146 SAEHNI----------NLDTMLETIIKKLE 165 (439)
T ss_dssp BTTTTB----------SHHHHHHHHHHHHH
T ss_pred eccCCC----------CHHHHHHHHHHhcc
Confidence 999998 89999999887665
No 57
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.07 E-value=3.4e-06 Score=86.48 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=64.5
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
++..||++|+|+|+..|.+.++.+....++..++|.+++ +||+|+.+... ++.++. .+++ .+++++|
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv-~NK~D~~~~~~-------~~~~~~-~lg~----~~~~~iS 145 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLA-VNKLDNTEMRA-------NIYDFY-SLGF----GEPYPIS 145 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEE-EECCCC------------CCCSSG-GGSS----CCCEECB
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEE-EECccCccchh-------hHHHHH-HcCC----CCeEEEe
Confidence 456799999999999999999988888888889886555 99999976311 111122 3344 2578999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
|.+|. ++.+|++.+.+.++.
T Consensus 146 A~~g~----------gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 146 GTHGL----------GLGDLLDAVAEHFKN 165 (436)
T ss_dssp TTTTB----------THHHHHHHHHHTGGG
T ss_pred CcCCC----------ChHHHHHHHHHhcCc
Confidence 99998 899999999887763
No 58
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.06 E-value=8.7e-06 Score=72.34 Aligned_cols=95 Identities=15% Similarity=0.097 Sum_probs=61.2
Q ss_pred ccccCCEEEEEEECCCCCCcchH--HHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHHH---------HHHHHHHHhhc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EIEIRELLNKY 70 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~--e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~i---------~~~i~~~l~~~ 70 (502)
.+..+|++++|+|++.+..-+.. ..+..+... ++|.++| +||+|+.+.....+.+ .++...+.+..
T Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv-~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV-GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 151 (186)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEE-EECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEE-eEcccccccchhhhhhcccccccCCHHHHHHHHHhc
Confidence 45679999999999875332222 234444444 7785555 9999997642221111 12233444444
Q ss_pred CCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 71 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 71 ~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
+. .+++++||++|. ++.++++.+.+.+..
T Consensus 152 ~~----~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 152 GA----VKYLECSALTQR----------GLKTVFDEAIRAVLC 180 (186)
T ss_dssp TC----SEEEECCTTTCT----------THHHHHHHHHHHHSC
T ss_pred CC----cEEEEecCCCcc----------CHHHHHHHHHHHHhc
Confidence 33 489999999987 899999998776654
No 59
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.05 E-value=8.3e-06 Score=74.23 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=60.9
Q ss_pred ccccCCEEEEEEECCCCCCcchH--HHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHHH---------HHHHHHHHhhc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EIEIRELLNKY 70 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~--e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~i---------~~~i~~~l~~~ 70 (502)
.+..+|++++|+|+++...-+.. ..+..+... ++|.++| +||+|+.+.....+.. .++...+.+..
T Consensus 98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv-~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 176 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV-GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 176 (204)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEE-EECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE-EechhhccchhhhhhhhccccccccHHHHHHHHHhc
Confidence 45789999999999875433322 334455554 7886555 9999997752222111 12334455554
Q ss_pred CCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 71 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 71 ~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+. .+++++||++|. ++.++++.+.+.
T Consensus 177 ~~----~~~~~~SA~~g~----------gi~~l~~~l~~~ 202 (204)
T 4gzl_A 177 GA----VKYLECSALTQR----------GLKTVFDEAIRA 202 (204)
T ss_dssp TC----SEEEECCTTTCT----------THHHHHHHHHHT
T ss_pred CC----cEEEEeeCCCCC----------CHHHHHHHHHHH
Confidence 43 579999999987 899999988763
No 60
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.03 E-value=8e-06 Score=72.31 Aligned_cols=90 Identities=13% Similarity=0.202 Sum_probs=59.6
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|+++... ....+++..+... ++| +++++||+|+.+.... ..+++..+++..+ .+++
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~ 152 (181)
T 2efe_B 82 YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDLLDARKV---TAEDAQTYAQENG-----LFFM 152 (181)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCS---CHHHHHHHHHHTT-----CEEE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccccC---CHHHHHHHHHHcC-----CEEE
Confidence 457999999999986543 2334445555544 555 4555999999764111 0123444554433 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
++||++|. ++.++++.|.+.++.
T Consensus 153 ~~Sa~~g~----------gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 153 ETSAKTAT----------NVKEIFYEIARRLPR 175 (181)
T ss_dssp ECCSSSCT----------THHHHHHHHHHTCC-
T ss_pred EEECCCCC----------CHHHHHHHHHHHHHh
Confidence 99999987 899999999887653
No 61
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.01 E-value=1.2e-05 Score=72.14 Aligned_cols=92 Identities=17% Similarity=0.118 Sum_probs=57.9
Q ss_pred ccccCCEEEEEEECCCCCC-cchHHHHHHHHH------hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPM-PQTREHILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 76 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~-~qt~e~l~~~~~------~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 76 (502)
.+..+|++++|+|+++... ....+.+..+.. .++|.++ ++||+|+.+. ...+ ++.+.+....+....
T Consensus 87 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piil-v~nK~Dl~~~-~~~~----~~~~~~~~~~~~~~~ 160 (190)
T 2h57_A 87 YYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILF-FANKMDLRDA-VTSV----KVSQLLCLENIKDKP 160 (190)
T ss_dssp GGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEE-EEECTTSTTC-CCHH----HHHHHHTGGGCCSSC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEE-EEeCcCcccC-CCHH----HHHHHhChhhccCCc
Confidence 4567999999999987421 222233333332 3677555 4999999764 1112 233333211222235
Q ss_pred CeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 77 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 77 ~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
.+++++||++|. ++.++++.|.+.+
T Consensus 161 ~~~~~~Sa~~~~----------gi~~l~~~l~~~i 185 (190)
T 2h57_A 161 WHICASDAIKGE----------GLQEGVDWLQDQI 185 (190)
T ss_dssp EEEEECBTTTTB----------THHHHHHHHHHHC
T ss_pred eEEEEccCCCCc----------CHHHHHHHHHHHH
Confidence 789999999987 8999999987754
No 62
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.01 E-value=1.5e-05 Score=73.95 Aligned_cols=92 Identities=11% Similarity=0.061 Sum_probs=58.5
Q ss_pred ccCCEEEEEEECCCCCCcch---HHHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 6 AQMDGAILVCSAADGPMPQT---REHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt---~e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
..+|++++|+|++....-+. .+.+..+... ++|.++ |+||+|+.+..+......+.+..+....+ ...+++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piil-v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 182 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVI-GFNKIDKCNMDSLSIDNKLLIKQILDNVK---NPIKFS 182 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEE-EEECGGGCC--CCCHHHHHHHHHHHHHCC---SCEEEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEE-EEeCcccCCchhhHHHHHHHHHHHHHhcC---CCceEE
Confidence 56799999999987654332 2344444444 778555 49999997642211222233444554433 126899
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++||++|. ++.++++.|.+.+
T Consensus 183 ~~SA~~g~----------gi~~l~~~l~~~i 203 (228)
T 2qu8_A 183 SFSTLTGV----------GVEQAKITACELL 203 (228)
T ss_dssp ECCTTTCT----------THHHHHHHHHHHH
T ss_pred EEecccCC----------CHHHHHHHHHHHH
Confidence 99999987 8888888876544
No 63
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.01 E-value=1.7e-05 Score=76.95 Aligned_cols=86 Identities=21% Similarity=0.183 Sum_probs=58.1
Q ss_pred ccccCCEEEEEEECCCCC-Ccc-hHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 4 GAAQMDGAILVCSAADGP-MPQ-TREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~-~~q-t~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
.++++|.+++|+|+++.. ..+ ..+.+..+...++|.++| +||+|+.+..+ .+ ..+++.++++..+ .++++
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV-~NK~DL~~~~~-v~-~~~~~~~~~~~~g-----~~~~~ 147 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIV-FNKIDLLNEEE-KK-ELERWISIYRDAG-----YDVLK 147 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEE-ECCGGGCCHHH-HH-HHHHHHHHHHHTT-----CEEEE
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEE-EEcccCCCccc-cH-HHHHHHHHHHHCC-----CeEEE
Confidence 367899999999998754 322 235566677788887666 99999987521 11 1234445555544 47999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHH
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKAL 107 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l 107 (502)
+||++|. ++.+|++.+
T Consensus 148 ~SA~~g~----------gi~~L~~~l 163 (302)
T 2yv5_A 148 VSAKTGE----------GIDELVDYL 163 (302)
T ss_dssp CCTTTCT----------THHHHHHHT
T ss_pred EECCCCC----------CHHHHHhhc
Confidence 9999987 566665544
No 64
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.00 E-value=9.2e-06 Score=71.09 Aligned_cols=92 Identities=20% Similarity=0.173 Sum_probs=56.7
Q ss_pred ccccCCEEEEEEECCCCCC-cchHHHHH-HHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 4 GAAQMDGAILVCSAADGPM-PQTREHIL-LARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~-~qt~e~l~-~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
.+..+|++++|+|++.... ....+.+. ++.. .++|. ++++||+|+.+... .+ ++...+.........++
T Consensus 71 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~ 144 (171)
T 1upt_A 71 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAIL-VVFANKQDMEQAMT-SS----EMANSLGLPALKDRKWQ 144 (171)
T ss_dssp GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEE-EEEEECTTSTTCCC-HH----HHHHHHTGGGCTTSCEE
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEE-EEEEECCCCcCCCC-HH----HHHHHhCchhccCCceE
Confidence 4568999999999987643 22222332 2222 46674 55599999987411 11 22222221112223468
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++++||++|. ++.++++.|.+.+
T Consensus 145 ~~~~Sa~~~~----------gi~~l~~~l~~~i 167 (171)
T 1upt_A 145 IFKTSATKGT----------GLDEAMEWLVETL 167 (171)
T ss_dssp EEECCTTTCT----------THHHHHHHHHHHH
T ss_pred EEECcCCCCc----------CHHHHHHHHHHHH
Confidence 9999999987 8899998887654
No 65
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.99 E-value=2.9e-05 Score=69.96 Aligned_cols=94 Identities=15% Similarity=0.093 Sum_probs=57.7
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHh-----CCCeEEEEEEcCCCCChHHH---HHHHHHHHHHHHhhcCCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQV-----GVPYIVVFLNKADMVDDEEL---LELVEIEIRELLNKYEFPGND 76 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~-----~i~~iiv~iNK~D~~~~~~~---~~~i~~~i~~~l~~~~~~~~~ 76 (502)
...+|++|+|+|+++............+... ++|.+ +|.||+|+.+.+.. ...+..+....+.........
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFE-VFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEE-EEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEE-EEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 4569999999999987323333333334332 66755 45999999875222 122222223333332222235
Q ss_pred CeEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 77 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 77 ~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
.+++.+||++ . ++.++++.+.+.
T Consensus 172 ~~~~e~Sa~~-~----------~v~~~f~~l~~~ 194 (196)
T 3llu_A 172 LSFYLTSIYD-H----------SIFEAFSKVVQK 194 (196)
T ss_dssp EEEEEECTTS-T----------HHHHHHHHHHHH
T ss_pred cceEEEEech-h----------hHHHHHHHHHHH
Confidence 7899999998 7 888998887653
No 66
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.98 E-value=2.8e-06 Score=86.24 Aligned_cols=88 Identities=20% Similarity=0.326 Sum_probs=66.7
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
.+..+|++++|+|+ +...++.+.+..+...++|.++| +||+|+.+.... +....+.+.+ ..+++++|
T Consensus 110 ~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV-~NK~Dl~~~~~~-----~~~~~l~~~~-----g~~v~~vS 176 (423)
T 3qq5_A 110 VFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVV-VNKIDVLGEKAE-----ELKGLYESRY-----EAKVLLVS 176 (423)
T ss_dssp HHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEE-CCCCTTTTCCCT-----HHHHHSSCCT-----TCCCCCCS
T ss_pred HHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEE-EeCcCCCCccHH-----HHHHHHHHHc-----CCCEEEEE
Confidence 35669999999998 88999999999999999996555 999999875221 1122222222 35789999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCCCC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIPTP 114 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~ 114 (502)
|++|. ++.++++.|.+.++.+
T Consensus 177 Aktg~----------gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 177 ALQKK----------GFDDIGKTISEILPGD 197 (423)
T ss_dssp SCCTT----------STTTHHHHHHHHSCCC
T ss_pred CCCCC----------CHHHHHHHHHHhhhhh
Confidence 99987 7888999998877643
No 67
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.98 E-value=2.4e-05 Score=69.49 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=56.6
Q ss_pred ccccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 4 GAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
.+..+|++++|+|+++... ....+.+..+.. .++| +++++||+|+.+... .+ ++.+.+.........++
T Consensus 85 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~~ 158 (181)
T 2h17_A 85 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMT-VA----EISQFLKLTSIKDHQWH 158 (181)
T ss_dssp GGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHTTGGGCCSSCEE
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCcccCCC-HH----HHHHHhCcccccCCceE
Confidence 3568999999999987643 222333333332 4666 455599999976311 11 23333322122223468
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
++++||++|. ++.++++.|.+
T Consensus 159 ~~~~Sa~~g~----------gi~~l~~~l~~ 179 (181)
T 2h17_A 159 IQACCALTGE----------GLCQGLEWMMS 179 (181)
T ss_dssp EEECBTTTTB----------THHHHHHHHHT
T ss_pred EEEccCCCCc----------CHHHHHHHHHh
Confidence 9999999987 89999998865
No 68
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.96 E-value=2.1e-05 Score=70.63 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=59.2
Q ss_pred ccccCCEEEEEEECCCCCCcch-H-HHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHH---------HHHHHHHHHhhc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQT-R-EHILLARQV--GVPYIVVFLNKADMVDDEELLEL---------VEIEIRELLNKY 70 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt-~-e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~---------i~~~i~~~l~~~ 70 (502)
.+..+|++++|+|++....-+. . ..+..+... ++|.++| .||+|+.+.....+. ..++...+.+.+
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv-~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (194)
T 2atx_A 86 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI-GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI 164 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEE-EECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE-EEChhhcccccchhhcccccCcccCHHHHHHHHHHc
Confidence 3567999999999986432222 2 344555554 7785555 999999874211110 012344455554
Q ss_pred CCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 71 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 71 ~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++ .+++++||++|. ++.++++.|.+.
T Consensus 165 ~~----~~~~~~Sa~~g~----------gi~~l~~~l~~~ 190 (194)
T 2atx_A 165 GA----CCYVECSALTQK----------GLKTVFDEAIIA 190 (194)
T ss_dssp TC----SCEEECCTTTCT----------THHHHHHHHHHH
T ss_pred CC----cEEEEeeCCCCC----------CHHHHHHHHHHH
Confidence 43 479999999987 899999888654
No 69
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.96 E-value=1.1e-05 Score=62.87 Aligned_cols=79 Identities=18% Similarity=0.334 Sum_probs=68.9
Q ss_pred eEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCC---eeEEEEEEEEcceecceeecCCeEEEEecCCCccCcc
Q psy15224 123 LLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDT---VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVE 199 (502)
Q Consensus 123 ~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~---~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~ 199 (502)
..-|.++|+++..|+++.++|.+|.++.+..+.+.- ++ ...++.|+..+..++.++.+|.-|++.|.+ ..+++
T Consensus 8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~R--d~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~--~~dik 83 (99)
T 1d1n_A 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIR--QGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKN--FNDIK 83 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEEC--SSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTT--CSSCS
T ss_pred EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEE--CCEEEEEeEEhhhcccccccceECCCcEEEEEEcC--cCCCC
Confidence 356788899999999999999999999999999984 33 245788999999999999999999999985 56999
Q ss_pred cceEEe
Q psy15224 200 RGQVLA 205 (502)
Q Consensus 200 ~G~vl~ 205 (502)
.||+|-
T Consensus 84 ~GD~Ie 89 (99)
T 1d1n_A 84 EGDVIE 89 (99)
T ss_dssp SCSEEE
T ss_pred CCCEEE
Confidence 999984
No 70
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=97.96 E-value=1.1e-05 Score=78.99 Aligned_cols=50 Identities=28% Similarity=0.721 Sum_probs=45.9
Q ss_pred cceEEEeeccCchHHHHHHHHHHHHhcCCCcceeEEEEeeEEEEEeecCc
Q psy15224 328 KRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQ 377 (502)
Q Consensus 328 ~~WYvl~t~~~~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~ 377 (502)
++||++||.||+|++|.++|++++...|+++.+.++++|.+.+...++++
T Consensus 3 ~~WYvi~t~sg~E~kv~~~l~~~~~~~~~~~~~~~~~vp~e~~~~~~~~~ 52 (352)
T 2xhc_A 3 KKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPEEVVLDATSPS 52 (352)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHCCCSSEEEEECCEEEEECCSSCS
T ss_pred cEEEEEEEecCcHHHHHHHHHHHHHhcchhhhccEEEeeeEEEEEEecCc
Confidence 48999999999999999999999999999999999999999887776665
No 71
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.95 E-value=1.8e-05 Score=71.28 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=57.0
Q ss_pred ccccCCEEEEEEECCCCCC-cchHHHHHHHHHh-----------CCCeEEEEEEcCCCCChHHHHHHHHHHHH--HHHhh
Q psy15224 4 GAAQMDGAILVCSAADGPM-PQTREHILLARQV-----------GVPYIVVFLNKADMVDDEELLELVEIEIR--ELLNK 69 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~-----------~i~~iiv~iNK~D~~~~~~~~~~i~~~i~--~~l~~ 69 (502)
.+..+|++|+|+|++++.. ....+.+..+... ++|.++| +||+|+.+... .+++.+.+. .+.+.
T Consensus 83 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv-~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 160 (199)
T 4bas_A 83 YYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFF-ANKMDAAGAKT-AAELVEILDLTTLMGD 160 (199)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEE-EECTTSTTCCC-HHHHHHHHTHHHHHTT
T ss_pred HHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEE-EECcCCCCCCC-HHHHHHHhcchhhccC
Confidence 3568999999999987542 2222333333322 7785555 99999987511 122222221 11121
Q ss_pred cCCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 70 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 70 ~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
..++++++||++|. ++.++++.|.+.+
T Consensus 161 -----~~~~~~~~Sa~~g~----------gv~~l~~~l~~~~ 187 (199)
T 4bas_A 161 -----HPFVIFASNGLKGT----------GVHEGFSWLQETA 187 (199)
T ss_dssp -----SCEEEEECBTTTTB----------THHHHHHHHHHHH
T ss_pred -----CeeEEEEeeCCCcc----------CHHHHHHHHHHHH
Confidence 24689999999987 8889888887654
No 72
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.92 E-value=1.4e-05 Score=70.78 Aligned_cols=93 Identities=20% Similarity=0.173 Sum_probs=58.5
Q ss_pred ccccCCEEEEEEECCCCCCcchH--HHHHHHHHh--CCCeEEEEEEcCCCCChHHHHH-------HHHHHHHHHHhhcCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKADMVDDEELLE-------LVEIEIRELLNKYEF 72 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~--e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~-------~i~~~i~~~l~~~~~ 72 (502)
.+..+|++++|+|++....-+.. ..+..+... ++|.++| .||+|+.+...... ...++...+.+.++.
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv-~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 154 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLV-GTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA 154 (182)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEE-EECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE-EechhhhcCcccccccccCCCCCHHHHHHHHHHcCC
Confidence 35679999999999864322221 233444442 6775555 99999976422100 011234445554443
Q ss_pred CCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 73 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 73 ~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
.+++++||++|. ++.++++.+.+.+
T Consensus 155 ----~~~~~~Sa~~~~----------gi~~l~~~l~~~i 179 (182)
T 3bwd_D 155 ----PAYIECSSKSQE----------NVKGVFDAAIRVV 179 (182)
T ss_dssp ----SEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred ----CEEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 479999999987 8999999887654
No 73
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=97.92 E-value=2.3e-06 Score=68.55 Aligned_cols=86 Identities=13% Similarity=0.280 Sum_probs=61.1
Q ss_pred ccceEEEeeccCchHHHHHHHHHHHHhc---CCCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEEEeCccceee
Q psy15224 327 KKRWYVIHSYSGMEKNVQRKLIERINKL---GMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHL 403 (502)
Q Consensus 327 ~~~WYvl~t~~~~E~~v~~~L~~~~~~~---~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~ 403 (502)
+.+-|+++|++|+|+.++..|.++.... +-+-.++.+|.| +=++|||||+.+........
T Consensus 5 Dp~i~~Vk~~~G~Er~va~~L~~k~~~~~~~~~~l~I~Si~~~-----------------~~lkGyIyVEA~~~~~V~~a 67 (106)
T 3h7h_B 5 DPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAP-----------------EHVKGYIYVEAYKQTHVKQA 67 (106)
T ss_dssp CCEEEEEECCTTCHHHHHHHHHHHHHHHTTSSSCCCCCEEEEC-----------------TTCCSEEEEEESSHHHHHHH
T ss_pred CCCEEEEEECCCcHHHHHHHHHHHHHHhhccCCCcceEEEEec-----------------CCCceEEEEEeCCHHHHHHH
Confidence 4568999999999999999999887621 222236678887 34899999999876666677
Q ss_pred eeccCCeeE-eccCCCCcceeCCHHHHHHHHH
Q psy15224 404 VKNTKKVTG-FIGGKSNRPTPISSKEIEEILK 434 (502)
Q Consensus 404 i~~~~~v~~-~l~~~~~~p~~v~~~ei~~~~~ 434 (502)
+..++++.+ ... ...+|-+||..+.+
T Consensus 68 i~gi~~v~~~~~~-----~~lVpi~Em~~~L~ 94 (106)
T 3h7h_B 68 IEGVGNLRLGYWN-----QQMVPIKEMTDVLK 94 (106)
T ss_dssp HTTCGGGGGGSSC-----CEECCGGGTTGGGC
T ss_pred Hhcccceeccccc-----ceEEcHHHHHHhcC
Confidence 766666654 222 23477788877653
No 74
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.91 E-value=1.1e-05 Score=83.01 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=61.6
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
++..||++|+|+|+..|++.++.+.+..++..++|.+++ +||+|+.+... .+.++ ..+++ .+.+++|
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV-~NK~D~~~~~~-------~~~e~-~~lg~----~~~~~iS 165 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLA-VNKLDNTEMRA-------NIYDF-YSLGF----GEPYPIS 165 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEE-EECC----------------CCS-GGGSS----SSEEECC
T ss_pred hHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEE-EECccchhhhh-------hHHHH-HHcCC----CceEEee
Confidence 346799999999999999999999999998889996655 99999875311 11112 23344 2467999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
|.+|. ++.+|++.+.+.++
T Consensus 166 A~~g~----------gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 166 GTHGL----------GLGDLLDAVAEHFK 184 (456)
T ss_dssp TTTCT----------THHHHHHHHHTTGG
T ss_pred ccccc----------chHHHHHHHHhhcc
Confidence 99987 89999999987665
No 75
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.89 E-value=4.2e-05 Score=69.19 Aligned_cols=91 Identities=19% Similarity=0.175 Sum_probs=58.6
Q ss_pred ccccCCEEEEEEECCCCCCcch--HHHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHHH---------HHHHHHHHhhc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQT--REHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EIEIRELLNKY 70 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt--~e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~i---------~~~i~~~l~~~ 70 (502)
.+..+|++++|+|++....-+. ...+..+... ++|.++| +||+|+.+.....+.+ .++...+.+.+
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv-~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (201)
T 2gco_A 93 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV-GNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI 171 (201)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEE-EECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE-EecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC
Confidence 4568999999999986322111 2344455554 7885555 9999998752221111 12334455554
Q ss_pred CCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 71 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 71 ~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+. .+++++||++|. ++.++++.|.+
T Consensus 172 ~~----~~~~~~SA~~g~----------gi~~l~~~i~~ 196 (201)
T 2gco_A 172 SA----FGYLECSAKTKE----------GVREVFEMATR 196 (201)
T ss_dssp TC----SEEEECCTTTCT----------THHHHHHHHHH
T ss_pred CC----cEEEEeeCCCCC----------CHHHHHHHHHH
Confidence 43 479999999987 88999888765
No 76
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.88 E-value=1.7e-05 Score=71.22 Aligned_cols=90 Identities=18% Similarity=0.194 Sum_probs=59.1
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|++.... ......+..+... ++|. ++++||+|+.+.... ..+++..+++..+ .+++
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-iiv~NK~Dl~~~~~v---~~~~~~~~~~~~~-----~~~~ 163 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVM-AIAGNKCDLSDIREV---PLKDAKEYAESIG-----AIVV 163 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEE-EEEEECGGGGGGCCS---CHHHHHHHHHTTT-----CEEE
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcE-EEEEECccccccccc---CHHHHHHHHHHcC-----CEEE
Confidence 467999999999987532 2223344444443 5664 555999999753110 0123445555443 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
++||++|. ++.++++.|.+.++.
T Consensus 164 ~~Sa~~~~----------gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 164 ETSAKNAI----------NIEELFQGISRQIPP 186 (192)
T ss_dssp ECBTTTTB----------SHHHHHHHHHHTCC-
T ss_pred EEeCCCCc----------CHHHHHHHHHHHHHh
Confidence 99999987 899999999887653
No 77
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.88 E-value=3.9e-05 Score=68.57 Aligned_cols=92 Identities=18% Similarity=0.133 Sum_probs=56.8
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|++..-. ....+.+..+.. .++|.++ ++||+|+.+..+ .+ ++...+..........++
T Consensus 88 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piil-v~NK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~ 161 (188)
T 1zd9_A 88 CRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLV-LGNKRDLPGALD-EK----ELIEKMNLSAIQDREICC 161 (188)
T ss_dssp HTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEE-EEECTTSTTCCC-HH----HHHHHTTGGGCCSSCEEE
T ss_pred HccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEE-EEECCCCccCCC-HH----HHHHHhChhhhccCCeeE
Confidence 467999999999986422 222233332222 5677555 599999976411 11 222222211122235689
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+++||++|. ++.++++.|.+.+.
T Consensus 162 ~~~SA~~g~----------gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 162 YSISCKEKD----------NIDITLQWLIQHSK 184 (188)
T ss_dssp EECCTTTCT----------THHHHHHHHHHTCC
T ss_pred EEEECCCCC----------CHHHHHHHHHHHHH
Confidence 999999987 89999999987653
No 78
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.87 E-value=2.9e-05 Score=68.85 Aligned_cols=92 Identities=22% Similarity=0.162 Sum_probs=58.2
Q ss_pred ccccCCEEEEEEECCCCCC-cchHHHHHHHH----HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 4 GAAQMDGAILVCSAADGPM-PQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~-~qt~e~l~~~~----~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
.+..+|++++|+|++.... ....+.+..+. ..++| +++++||+|+.+... . +++.+.+..........+
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~----~~i~~~~~~~~~~~~~~~ 155 (183)
T 1moz_A 82 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQPGALS-A----SEVSKELNLVELKDRSWS 155 (183)
T ss_dssp TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTCCC-H----HHHHHHTTTTTCCSSCEE
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCCCC-H----HHHHHHhCcccccCCceE
Confidence 4568999999999987643 22233333333 24566 455599999976411 1 133334432222323468
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++++||++|. ++.++++.|.+.+
T Consensus 156 ~~~~Sa~~~~----------gi~~l~~~l~~~~ 178 (183)
T 1moz_A 156 IVASSAIKGE----------GITEGLDWLIDVI 178 (183)
T ss_dssp EEEEBGGGTB----------THHHHHHHHHHHH
T ss_pred EEEccCCCCc----------CHHHHHHHHHHHH
Confidence 9999999987 8999998887643
No 79
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.87 E-value=3.8e-06 Score=80.49 Aligned_cols=86 Identities=26% Similarity=0.369 Sum_probs=60.4
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcccc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 85 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~ 85 (502)
..+|++++|+|+.. .......+..+...++|.+++ +||+|+.+... ... .+..+.+.++ .|++++||+
T Consensus 84 ~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv-~NK~Dl~~~~~-~~~---~~~~l~~~lg-----~~~i~~SA~ 151 (274)
T 3i8s_A 84 GDADLLINVVDASN--LERNLYLTLQLLELGIPCIVA-LNMLDIAEKQN-IRI---EIDALSARLG-----CPVIPLVST 151 (274)
T ss_dssp TCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEE-EECHHHHHHTT-EEE---CHHHHHHHHT-----SCEEECCCG
T ss_pred cCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEE-EECccchhhhh-HHH---HHHHHHHhcC-----CCEEEEEcC
Confidence 58999999999986 344455666777889996665 99999865311 000 1122233333 579999999
Q ss_pred ccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 86 LALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 86 ~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
+|. ++.+|++.+.+.++.
T Consensus 152 ~g~----------gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 152 RGR----------GIEALKLAIDRYKAN 169 (274)
T ss_dssp GGH----------HHHHHHHHHHTCCCC
T ss_pred CCC----------CHHHHHHHHHHHHhc
Confidence 987 899999999887653
No 80
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.87 E-value=2.4e-05 Score=67.98 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=55.6
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|+++.-. ....+.+..+.. .++|. +++.||+|+.+... .+ ++...+..........++
T Consensus 65 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~ 138 (164)
T 1r8s_A 65 FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL-LVFANKQDLPNAMN-AA----EITDKLGLHSLRHRNWYI 138 (164)
T ss_dssp TTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEE-EEEEECTTSTTCCC-HH----HHHHHTTGGGCSSCCEEE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeE-EEEEECcCCcCCCC-HH----HHHHHhCcccccCccEEE
Confidence 568999999999986522 112222322222 26664 55599999976411 11 222222211122234689
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+++||++|. ++.++++.|.+.+.
T Consensus 139 ~~~Sa~~~~----------gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 139 QATCATSGD----------GLYEGLDWLSNQLR 161 (164)
T ss_dssp EECBTTTTB----------THHHHHHHHHHHC-
T ss_pred EEcccCCCc----------CHHHHHHHHHHHHh
Confidence 999999987 89999999877553
No 81
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.86 E-value=2.1e-05 Score=69.36 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=58.1
Q ss_pred cccCCEEEEEEECCCCCCc-chHHHHHHHHHh-----CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 5 AAQMDGAILVCSAADGPMP-QTREHILLARQV-----GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~-qt~e~l~~~~~~-----~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
+..+|++++|+|+++...- .....+..+... +.|.++++.||+|+.+..... .++...+.+..+ ++
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~~ 148 (178)
T 2hxs_A 77 IYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK---PEKHLRFCQENG-----FS 148 (178)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC---HHHHHHHHHHHT-----CE
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC---HHHHHHHHHHcC-----Cc
Confidence 4579999999999874332 222333334332 677666669999997531100 112334444433 47
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++++||++|. ++.++++.|.+.+.
T Consensus 149 ~~~~Sa~~~~----------gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 149 SHFVSAKTGD----------SVFLCFQKVAAEIL 172 (178)
T ss_dssp EEEECTTTCT----------THHHHHHHHHHHHT
T ss_pred EEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 9999999987 89999998877654
No 82
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.85 E-value=5.7e-05 Score=61.03 Aligned_cols=80 Identities=16% Similarity=0.274 Sum_probs=68.8
Q ss_pred eEEEeEEEeeCCCeE---EEEEEEEEeeeecCCEEEEeecCCCe---eEEEEEEEEcceecceeecCCeEEEEecCCCcc
Q psy15224 123 LLPVEDVFSISGRGT---VVTGRVERGIVRVGEELEIIGIKDTV---KTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKRE 196 (502)
Q Consensus 123 ~~~v~~~~~~~~~G~---v~~g~v~sG~l~~gd~v~i~p~~~~~---~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~ 196 (502)
..-|.++|+++..|+ ++.++|.+|.|+.+..+.+.- ++. ..++.|+..+..++.++.+|.-|++.|.+ ..
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviR--dg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~--fn 87 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIR--NGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDE--EK 87 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEE--TTEEEEEECCSEEESSSSCCSEECTTCEEEEECSC--TT
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEE--CCEEEEEeEehhhcccccccceecCCCEEEEEEcc--CC
Confidence 466889999988888 999999999999999999984 332 45788999999999999999999999984 55
Q ss_pred -CcccceEEeC
Q psy15224 197 -DVERGQVLAK 206 (502)
Q Consensus 197 -~i~~G~vl~~ 206 (502)
+++.||+|-.
T Consensus 88 iDik~GDiIE~ 98 (120)
T 2crv_A 88 VEFKPGDQVIC 98 (120)
T ss_dssp SCCCTTEEEEE
T ss_pred CCCCCCCEEEE
Confidence 8999999953
No 83
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.84 E-value=3.5e-05 Score=70.38 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=52.9
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHH---------HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHh-------
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLAR---------QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN------- 68 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~---------~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~------- 68 (502)
...+|++++|+|+.. ...+..+....+. ..++| ++++.||+|+.+.. ..+.+.+.+...+.
T Consensus 76 ~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~ 152 (214)
T 2fh5_B 76 KSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPS-LLIACNKQDIAMAK-SAKLIQQQLEKELNTLRVTRS 152 (214)
T ss_dssp GGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCE-EEEEEECTTSTTCC-CHHHHHHHHHHHHHHHHHHCC
T ss_pred HhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCC-EEEEEECCCCCCcc-cHHHHHHHHHHHHHHHhccch
Confidence 457899999999975 2222333333222 12566 45559999997641 12233334443333
Q ss_pred ------------h--cC-----CC--C--CCCeEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 69 ------------K--YE-----FP--G--NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 69 ------------~--~~-----~~--~--~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
. ++ |. . ..++++.+||++|.+.+.. .++.++++.|.+.
T Consensus 153 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~----~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 153 AAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGS----ADIQDLEKWLAKI 213 (214)
T ss_dssp ------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------C----CBCHHHHHHHHHH
T ss_pred hccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccc----cChHHHHHHHHHh
Confidence 1 11 00 0 1568999999998211100 1888998888653
No 84
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.84 E-value=2.9e-05 Score=69.38 Aligned_cols=92 Identities=20% Similarity=0.177 Sum_probs=56.7
Q ss_pred ccccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 4 GAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
.+..+|++++|+|+++.-. ....+.+..+.. .++|. ++++||+|+.+... .+ ++...+.........++
T Consensus 86 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~ 159 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLL-LIFANKQDLPDAAS-EA----EIAEQLGVSSIMNRTWT 159 (189)
T ss_dssp SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEE-EEEEECTTSTTCCC-HH----HHHHHTTGGGCCSSCEE
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeE-EEEEECCCCcCCCC-HH----HHHHHhChhhccCCceE
Confidence 4568999999999987533 222233332222 36664 55599999976411 11 22222221112223468
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++++||++|. ++.++++.+.+.+
T Consensus 160 ~~~~Sa~~~~----------gi~~l~~~l~~~i 182 (189)
T 2x77_A 160 IVKSSSKTGD----------GLVEGMDWLVERL 182 (189)
T ss_dssp EEECCTTTCT----------THHHHHHHHHHHH
T ss_pred EEEccCCCcc----------CHHHHHHHHHHHH
Confidence 9999999987 8899998887654
No 85
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.82 E-value=4.1e-05 Score=68.11 Aligned_cols=93 Identities=22% Similarity=0.164 Sum_probs=57.6
Q ss_pred ccccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 4 GAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
.+..+|++++|+|+++... ....+.+..+.. .++|. ++++||+|+.+... .+ ++.+.+..........+
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~ 155 (186)
T 1ksh_A 82 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL-LIFANKQDLPGALS-CN----AIQEALELDSIRSHHWR 155 (186)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEE-EEEEECTTSTTCCC-HH----HHHHHTTGGGCCSSCEE
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcE-EEEEeCccCCCCCC-HH----HHHHHhChhhccCCceE
Confidence 4578999999999987532 222233333322 35664 55599999976411 11 23333321112223568
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++++||++|. ++.++++.+.+.++
T Consensus 156 ~~~~Sa~~~~----------gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 156 IQGCSAVTGE----------DLLPGIDWLLDDIS 179 (186)
T ss_dssp EEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred EEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 9999999987 88999988876553
No 86
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.79 E-value=1.2e-05 Score=72.19 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=57.7
Q ss_pred ccccCCEEEEEEECCCCCCcch--HHHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 4 GAAQMDGAILVCSAADGPMPQT--REHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt--~e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.+..+|++++|+|+++...-.. ...+..+... ++|. ++|.||+|+.+...+ ....+++..+.+..++ .++
T Consensus 91 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~----~~~ 164 (194)
T 3reg_A 91 SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT-VLVGLKVDLRKDGSD-DVTKQEGDDLCQKLGC----VAY 164 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEE-EEEEECGGGCCTTTT-CCCHHHHHHHHHHHTC----SCE
T ss_pred hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhhccCCCC-cccHHHHHHHHHhcCC----CEE
Confidence 4568999999999987432222 2233344433 5665 455999999753100 0111234455555554 239
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.+.+.+
T Consensus 165 ~~~Sa~~~~----------gi~~l~~~l~~~i 186 (194)
T 3reg_A 165 IEASSVAKI----------GLNEVFEKSVDCI 186 (194)
T ss_dssp EECBTTTTB----------SHHHHHHHHHHHH
T ss_pred EEeecCCCC----------CHHHHHHHHHHHH
Confidence 999999987 8889888887654
No 87
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.78 E-value=5.8e-05 Score=68.63 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=58.1
Q ss_pred ccccCCEEEEEEECCCCCC--cchHHHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHHH---------HHHHHHHHhhc
Q psy15224 4 GAAQMDGAILVCSAADGPM--PQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EIEIRELLNKY 70 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~--~qt~e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~i---------~~~i~~~l~~~ 70 (502)
.+..+|++++|+|++.... ......+..+... ++|.++| +||+|+.+.....+.+ .++...+....
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv-~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILV-ANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRI 171 (207)
T ss_dssp GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEE-EECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE-EEchhhhccccchhhhhhcccCCCCHHHHHHHHHhc
Confidence 3567999999999986322 1112344455544 7885554 9999997642221111 11223333333
Q ss_pred CCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 71 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 71 ~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+. .+++++||++|. ++.+|++.|.+.+
T Consensus 172 ~~----~~~~~~SA~~g~----------gi~el~~~l~~~i 198 (207)
T 2fv8_A 172 QA----YDYLECSAKTKE----------GVREVFETATRAA 198 (207)
T ss_dssp TC----SEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred CC----CEEEEeeCCCCC----------CHHHHHHHHHHHH
Confidence 32 479999999987 8999998887654
No 88
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.78 E-value=3.3e-05 Score=69.51 Aligned_cols=86 Identities=16% Similarity=0.146 Sum_probs=55.1
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHH-HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLAR-QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~-~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
+..+|++++|+|+..+...+. .+.+..+. ..+.| +++|+||+|+...+... +++..+++..+ ++++++
T Consensus 114 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~~~~----~~~~~~~~~~~-----~~~~~~ 183 (208)
T 3clv_A 114 YRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI-IILVANKIDKNKFQVDI----LEVQKYAQDNN-----LLFIQT 183 (208)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCE-EEEEEECTTCC-CCSCH----HHHHHHHHHTT-----CEEEEE
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCc-EEEEEECCCcccccCCH----HHHHHHHHHcC-----CcEEEE
Confidence 467999999999987643333 23333333 35555 55669999942221111 24455555543 589999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
||++|. ++.++++.|.+.
T Consensus 184 Sa~~~~----------~i~~l~~~l~~~ 201 (208)
T 3clv_A 184 SAKTGT----------NIKNIFYMLAEE 201 (208)
T ss_dssp CTTTCT----------THHHHHHHHHHH
T ss_pred ecCCCC----------CHHHHHHHHHHH
Confidence 999987 888888887653
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.77 E-value=5.5e-05 Score=67.85 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=56.8
Q ss_pred ccccCCEEEEEEECCCCCC-cchHHHHHHHH----HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcC-------
Q psy15224 4 GAAQMDGAILVCSAADGPM-PQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE------- 71 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~-~qt~e~l~~~~----~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~------- 71 (502)
....+|++++|+|++++.. ....+.+..+. ..++|.++ +.||+|+.+. ... +++.+.+....
T Consensus 87 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil-v~NK~Dl~~~-~~~----~~~~~~~~~~~~~~~~~~ 160 (190)
T 1m2o_B 87 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVI-LGNKIDAPNA-VSE----AELRSALGLLNTTGSQRI 160 (190)
T ss_dssp GCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEE-EEECTTSTTC-CCH----HHHHHHTTCSSCCC---C
T ss_pred HHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEE-EEECCCCcCC-CCH----HHHHHHhCCccccccccc
Confidence 3568999999999987532 22222333332 24677554 5999999763 111 23444443221
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
......+++++||++|. ++.++++.|.+.
T Consensus 161 ~~~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~ 189 (190)
T 1m2o_B 161 EGQRPVEVFMCSVVMRN----------GYLEAFQWLSQY 189 (190)
T ss_dssp CSSCCEEEEECBTTTTB----------SHHHHHHHHHTT
T ss_pred cccceEEEEEeECCcCC----------CHHHHHHHHHhh
Confidence 01124689999999987 899999988753
No 90
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.77 E-value=3e-05 Score=74.15 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=56.0
Q ss_pred cCCEEEEEEECC-CCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcccc
Q psy15224 7 QMDGAILVCSAA-DGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 85 (502)
Q Consensus 7 ~~D~ailvVda~-~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~ 85 (502)
.+|+++++|++. ++..+.+.+.+..+.. ++|.++| +||+|+.+. +..+..++++.+.+...+ ++++++||.
T Consensus 115 r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V-~nK~D~~~~-~e~~~~~~~i~~~l~~~~-----i~v~~~sa~ 186 (274)
T 3t5d_A 115 RVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPL-IAKADTLTP-EECQQFKKQIMKEIQEHK-----IKIYEFPET 186 (274)
T ss_dssp CCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEE-ESSGGGSCH-HHHHHHHHHHHHHHHHTT-----CCCCCC---
T ss_pred ceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEE-EeccCCCCH-HHHHHHHHHHHHHHHHcC-----CeEEcCCCC
Confidence 478999999665 4888889888887776 8886555 999999875 334445556666665543 457788998
Q ss_pred ccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 86 LALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 86 ~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++. ++.+|++.|.+.+|
T Consensus 187 ~~~----------~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 187 DDE----------EENKLVKKIKDRLP 203 (274)
T ss_dssp ------------------CHHHHHTCS
T ss_pred CCh----------hHHHHHHHHhcCCC
Confidence 876 77888888887665
No 91
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.77 E-value=1.9e-05 Score=72.13 Aligned_cols=94 Identities=18% Similarity=0.128 Sum_probs=59.5
Q ss_pred ccccCCEEEEEEECCCCCCcchH--HHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHH-----HHHHHHHHHhhcCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKADMVDDEELLEL-----VEIEIRELLNKYEFPG 74 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~--e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~-----i~~~i~~~l~~~~~~~ 74 (502)
.+..+|++++|+|+++...-+.. ..+..+... ++|.++| .||+|+.+....... ..++...+.+.++.
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv-~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~-- 153 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLV-GTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA-- 153 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEE-EECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC--
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE-EeCHHhhhCccccccccCCCCHHHHHHHHHHcCC--
Confidence 35679999999999864322111 233444443 7785555 999999764221000 12234445555543
Q ss_pred CCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 75 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 75 ~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
.+++++||++|. ++.++++.|.+.+.
T Consensus 154 --~~~~~~Sa~~g~----------gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 154 --AAYIECSSKTQQ----------NVKAVFDTAIKVVL 179 (212)
T ss_dssp --SEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred --ceEEEccCCCCC----------CHHHHHHHHHHHHh
Confidence 479999999987 88888888876554
No 92
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.76 E-value=3.3e-05 Score=69.00 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=57.7
Q ss_pred ccccCCEEEEEEECCCCCC-cchHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 4 GAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.+..+|++++|+|++.... ....+.+..+... ++|. ++++||+|+.+..... .+++..+.+.++ +++
T Consensus 91 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~~~ 161 (189)
T 2gf9_A 91 YYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQV-ILVGNKCDLEDERVVP---AEDGRRLADDLG-----FEF 161 (189)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTCGGGCCSC---HHHHHHHHHHHT-----CEE
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECcccccccCCC---HHHHHHHHHHcC-----CeE
Confidence 4568999999999986432 2233444555553 5664 5559999997631110 123344455444 479
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.|.+.+
T Consensus 162 ~~~Sa~~g~----------gi~~l~~~l~~~i 183 (189)
T 2gf9_A 162 FEASAKENI----------NVKQVFERLVDVI 183 (189)
T ss_dssp EECBTTTTB----------SHHHHHHHHHHHH
T ss_pred EEEECCCCC----------CHHHHHHHHHHHH
Confidence 999999987 8888888876543
No 93
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.76 E-value=8.9e-05 Score=65.96 Aligned_cols=90 Identities=31% Similarity=0.390 Sum_probs=61.6
Q ss_pred cccCCEEEEEEECCC-----------CCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCC
Q psy15224 5 AAQMDGAILVCSAAD-----------GPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 73 (502)
Q Consensus 5 ~~~~D~ailvVda~~-----------g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 73 (502)
+..+++++.|+|+.. +...++.+.+..+...++|.++| +||+|+.+.. . +++..+.+.++..
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv-~nK~Dl~~~~---~---~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVA-VNKLDKIKNV---Q---EVINFLAEKFEVP 152 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEE-EECGGGCSCH---H---HHHHHHHHHHTCC
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEE-eehHhccCcH---H---HHHHHHHHHhhhh
Confidence 567889999999864 34455566666777788996555 9999998752 1 2333444444542
Q ss_pred CC--CCeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 74 GN--DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 74 ~~--~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
.. ..+++++||++|. ++.++++.+.+.+
T Consensus 153 ~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGD----------NIERLKNRIFEVI 182 (190)
T ss_dssp GGGHHHHEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred hhccCCcEEEEecCCCC----------CHHHHHHHHHHhc
Confidence 11 1368999999987 8899988887654
No 94
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.76 E-value=3.7e-05 Score=66.98 Aligned_cols=89 Identities=22% Similarity=0.267 Sum_probs=57.8
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|++.....+. ...+..+... ++| ++++.||+|+.+..+... ++...+.+..+ .+++
T Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~~-----~~~~ 146 (170)
T 1z0j_A 76 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVREVME---RDAKDYADSIH-----AIFV 146 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGCCSCH---HHHHHHHHHTT-----CEEE
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECCccccccccCH---HHHHHHHHHcC-----CEEE
Confidence 467899999999987543222 3344555544 344 455589999976411111 22333444433 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++||++|. ++.+|++.|.+.++
T Consensus 147 ~~Sa~~~~----------~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 147 ETSAKNAI----------NINELFIEISRRIP 168 (170)
T ss_dssp ECBTTTTB----------SHHHHHHHHHHHCC
T ss_pred EEeCCCCc----------CHHHHHHHHHHHHh
Confidence 99999987 89999999887664
No 95
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.76 E-value=2.4e-05 Score=75.67 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=54.2
Q ss_pred ccccCCEEEEEEECCCCCCcch--HHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 4 GAAQMDGAILVCSAADGPMPQT--REHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt--~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
.++++|.+++|+|+..+.+... .+++..+...+++.+|| +||+|+++.++ .++..+++.+.++..|+ ++++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~viv-lnK~DL~~~~~-~~~~~~~~~~~y~~~g~-----~v~~ 155 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIIC-ITKMDLIEDQD-TEDTIQAYAEDYRNIGY-----DVYL 155 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEE-EECGGGCCCHH-HHHHHHHHHHHHHHHTC-----CEEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEE-EECCccCchhh-hHHHHHHHHHHHHhCCC-----eEEE
Confidence 4789999999999997766443 33445556689997766 99999998622 11122345556655564 5899
Q ss_pred ccccccc
Q psy15224 82 GSAKLAL 88 (502)
Q Consensus 82 iSa~~g~ 88 (502)
+||.+|.
T Consensus 156 ~sa~~~~ 162 (307)
T 1t9h_A 156 TSSKDQD 162 (307)
T ss_dssp CCHHHHT
T ss_pred EecCCCC
Confidence 9999876
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.76 E-value=3.3e-05 Score=69.48 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=55.6
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|+++... ....+.+..+.. .++|. +++.||+|+.+... .+ ++...+..........++
T Consensus 94 ~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~pi-ilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~~~ 167 (192)
T 2b6h_A 94 FQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVL-LVFANKQDMPNAMP-VS----ELTDKLGLQHLRSRTWYV 167 (192)
T ss_dssp HHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEE-EEEEECTTSTTCCC-HH----HHHHHTTGGGCSSCCEEE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeE-EEEEECCCCCCCCC-HH----HHHHHhCcccccCCceEE
Confidence 457999999999987532 122233332222 26664 55599999976411 11 222222211122234689
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.|.+.+
T Consensus 168 ~~~SA~~g~----------gi~~l~~~l~~~i 189 (192)
T 2b6h_A 168 QATCATQGT----------GLYDGLDWLSHEL 189 (192)
T ss_dssp EECBTTTTB----------THHHHHHHHHHHT
T ss_pred EECcCCCcC----------CHHHHHHHHHHHH
Confidence 999999987 8999999887654
No 97
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.75 E-value=4.5e-05 Score=68.06 Aligned_cols=89 Identities=25% Similarity=0.216 Sum_probs=56.9
Q ss_pred ccccCCEEEEEEECCCCCCcch-HHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 4 GAAQMDGAILVCSAADGPMPQT-REHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt-~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
.+..+|++++|+|+......+. .+.+..+.. .++|.++ ++||+|+.+..... .+++..+....+ .+
T Consensus 90 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil-v~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~~ 160 (195)
T 3bc1_A 90 FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL-CGNKSDLEDQRAVK---EEEARELAEKYG-----IP 160 (195)
T ss_dssp TTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEE-EEECTTCGGGCCSC---HHHHHHHHHHHT-----CC
T ss_pred HHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE-EEECcccccccccC---HHHHHHHHHHcC-----CC
Confidence 3568999999999987543322 334444443 4677555 59999997531110 123344444444 46
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++++||++|. ++.++++.|.+.+
T Consensus 161 ~~~~Sa~~~~----------~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 161 YFETSAANGT----------NISHAIEMLLDLI 183 (195)
T ss_dssp EEECCTTTCT----------THHHHHHHHHHHH
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHH
Confidence 9999999987 8888888876543
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.74 E-value=4.1e-05 Score=68.04 Aligned_cols=92 Identities=22% Similarity=0.147 Sum_probs=56.3
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHH-H---HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLA-R---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~-~---~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|+++... ....+.+..+ . ..++|.++ +.||+|+.+... .+ ++.+.+..........++
T Consensus 81 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil-v~NK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~ 154 (181)
T 1fzq_A 81 FENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLI-FANKQDLLTAAP-AS----EIAEGLNLHTIRDRVWQI 154 (181)
T ss_dssp HTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEE-EEECTTSTTCCC-HH----HHHHHTTGGGCCSSCEEE
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEE-EEECcCcccCCC-HH----HHHHHhCchhccCCceEE
Confidence 467999999999986432 1222233222 2 24677555 599999976411 11 233232211122234689
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+++||++|. ++.++++.+.+.+.
T Consensus 155 ~~~Sa~~g~----------gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 155 QSCSALTGE----------GVQDGMNWVCKNVN 177 (181)
T ss_dssp EECCTTTCT----------THHHHHHHHHHTC-
T ss_pred EEccCCCCC----------CHHHHHHHHHHHHH
Confidence 999999987 89999999987653
No 99
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.74 E-value=6.7e-05 Score=77.32 Aligned_cols=87 Identities=15% Similarity=0.073 Sum_probs=57.9
Q ss_pred ccccCCEEEEEEECCCCCCcch-HHHHHHHHHh-CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 4 GAAQMDGAILVCSAADGPMPQT-REHILLARQV-GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt-~e~l~~~~~~-~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
.+..||++++|+|++++...+. .+...++..+ ++| +++|+||+|+.+.... +. +++... ++ .++++
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~p-iIvV~NK~Dl~~~~~~-~~--~~l~~~----~~----~~~i~ 376 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAK-FLTVANKLDRAANADA-LI--RAIADG----TG----TEVIG 376 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSE-EEEEEECTTSCTTTHH-HH--HHHHHH----HT----SCEEE
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCC-EEEEEECcCCCCccch-hH--HHHHhc----CC----CceEE
Confidence 4678999999999999877621 1222333333 556 5555999999875221 11 122211 22 47999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+||++|. ++.+|++.|.+.++
T Consensus 377 vSAktg~----------GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 377 ISALNGD----------GIDTLKQHMGDLVK 397 (476)
T ss_dssp CBTTTTB----------SHHHHHHHHTHHHH
T ss_pred EEECCCC----------CHHHHHHHHHHHHh
Confidence 9999987 89999999887665
No 100
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.74 E-value=2.5e-05 Score=77.72 Aligned_cols=91 Identities=20% Similarity=0.127 Sum_probs=59.8
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCC--CCCeEEEcc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG--NDIPIIKGS 83 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~--~~~~ii~iS 83 (502)
..+|++++|+|+..+...|... ...+++|.++| +||+|+.+. ...+....++...+..+.... ...|++++|
T Consensus 191 ~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivV-lNK~Dl~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iS 264 (355)
T 3p32_A 191 NMVDTFVLLTLARTGDQLQGIK----KGVLELADIVV-VNKADGEHH-KEARLAARELSAAIRLIYPREALWRPPVLTMS 264 (355)
T ss_dssp TTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEE-EECCCGGGH-HHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEB
T ss_pred HhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEE-EECCCCcCh-hHHHHHHHHHHHHHhhccccccCCCCceEEEE
Confidence 6799999999987765433221 11234576665 999999764 333444455665554443211 136899999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
|++|. ++.+|++.|.+.++
T Consensus 265 A~~g~----------Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 265 AVEGR----------GLAELWDTVERHRQ 283 (355)
T ss_dssp GGGTB----------SHHHHHHHHHHHHH
T ss_pred cCCCC----------CHHHHHHHHHHHHH
Confidence 99987 88888888877653
No 101
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.73 E-value=1.5e-05 Score=69.50 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=55.7
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHHH---hCCCeEEEEEEcCCCCCh---HHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKADMVDD---EELLELVEIEIRELLNKYEFPGNDI 77 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~~---~~i~~iiv~iNK~D~~~~---~~~~~~i~~~i~~~l~~~~~~~~~~ 77 (502)
+..+|++++|+|+++...-+ ..+.+..+.. .++| ++++.||+|+.+. ..... ++...+.+..+ .
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~v~~---~~~~~~~~~~~-----~ 143 (170)
T 1ek0_A 73 YRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKIDXLQEGGERKVAR---EEGEKLAEEKG-----L 143 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSCCCCSCH---HHHHHHHHHHT-----C
T ss_pred hccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCccccccccCCCH---HHHHHHHHHcC-----C
Confidence 46799999999998743222 2222333332 2566 4455999998653 11111 12233444333 4
Q ss_pred eEEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 78 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 78 ~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+++++||++|. ++.++++.|.+.++
T Consensus 144 ~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 144 LFFETSAKTGE----------NVNDVFLGIGEKIP 168 (170)
T ss_dssp EEEECCTTTCT----------THHHHHHHHHTTSC
T ss_pred EEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 79999999987 89999999887553
No 102
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.72 E-value=4.2e-05 Score=66.75 Aligned_cols=89 Identities=19% Similarity=0.179 Sum_probs=56.5
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH-----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~-----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
+..+|++++|+|++.... .+..+.+..+.. .++|.++ ++||+|+.+..+... .+...+.+..+ .+
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~-v~nK~Dl~~~~~v~~---~~~~~~~~~~~-----~~ 142 (172)
T 2erx_A 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIML-VGNKCDESPSREVQS---SEAEALARTWK-----CA 142 (172)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEE-EEECGGGGGGCCSCH---HHHHHHHHHHT-----CE
T ss_pred cccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEE-EEEccccccccccCH---HHHHHHHHHhC-----Ce
Confidence 456899999999986422 223334444443 2678555 599999865311101 12233333333 57
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++++||++|. ++.++++.|.+.+.
T Consensus 143 ~~~~Sa~~~~----------gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 143 FMETSAKLNH----------NVKELFQELLNLEK 166 (172)
T ss_dssp EEECBTTTTB----------SHHHHHHHHHHTCC
T ss_pred EEEecCCCCc----------CHHHHHHHHHHHHh
Confidence 9999999987 89999999988654
No 103
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.71 E-value=8.9e-06 Score=77.02 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=57.0
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcccc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 85 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~ 85 (502)
..+|++++|+|++. ..........+..+++|.+++ +||+|+.+... .....+++. +.++ +|++++||+
T Consensus 82 ~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv-~NK~Dl~~~~~-~~~~~~~l~---~~lg-----~~vi~~SA~ 149 (256)
T 3iby_A 82 LEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVA-LNMMDIAEHRG-ISIDTEKLE---SLLG-----CSVIPIQAH 149 (256)
T ss_dssp SCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEE-EECHHHHHHTT-CEECHHHHH---HHHC-----SCEEECBGG
T ss_pred CCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEE-EEChhcCCcCC-cHHHHHHHH---HHcC-----CCEEEEECC
Confidence 57999999999986 233344555666778896555 99999865311 001112232 3333 579999999
Q ss_pred ccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 86 LALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 86 ~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+|. ++.+|++.+.+.
T Consensus 150 ~g~----------gi~el~~~i~~~ 164 (256)
T 3iby_A 150 KNI----------GIPALQQSLLHC 164 (256)
T ss_dssp GTB----------SHHHHHHHHHTC
T ss_pred CCC----------CHHHHHHHHHhh
Confidence 987 899999999875
No 104
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.71 E-value=3.7e-05 Score=70.43 Aligned_cols=88 Identities=19% Similarity=0.122 Sum_probs=53.3
Q ss_pred cccCCEEEEEEECCCCCCcchH-HHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR-EHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~-e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|++++...+.. +.+..+.. .++|.++| +||+|+.+..... .++...+.+.. ..+++
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv-~nK~Dl~~~~~~~---~~~~~~~~~~~-----~~~~~ 152 (218)
T 4djt_A 82 YIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVC-ANKIDIKNRQKIS---KKLVMEVLKGK-----NYEYF 152 (218)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEE-EECTTCC----CC---HHHHHHHTTTC-----CCEEE
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEE-EECCCCccccccC---HHHHHHHHHHc-----CCcEE
Confidence 3569999999999976543333 22233333 36775554 9999997641111 12233333322 36899
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++||++|. ++.++++.|.+.+
T Consensus 153 ~~Sa~~g~----------gv~~l~~~l~~~~ 173 (218)
T 4djt_A 153 EISAKTAH----------NFGLPFLHLARIF 173 (218)
T ss_dssp EEBTTTTB----------TTTHHHHHHHHHH
T ss_pred EEecCCCC----------CHHHHHHHHHHHH
Confidence 99999987 6777777766544
No 105
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.70 E-value=8e-05 Score=67.25 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=56.1
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHH----HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcC--------
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE-------- 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~----~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~-------- 71 (502)
...+|++++|+|+++... ....+.+..+. ..++|.++ +.||+|+.+. ... +++.+.+....
T Consensus 90 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piil-v~NK~Dl~~~-~~~----~~~~~~~~~~~~~~~~~~~ 163 (198)
T 1f6b_A 90 LPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILI-LGNKIDRPEA-ISE----ERLREMFGLYGQTTGKGSV 163 (198)
T ss_dssp GGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEE-EEECTTSTTC-CCH----HHHHHHHTCTTTCCCSSCC
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEE-EEECCCcccc-CCH----HHHHHHhCccccccccccc
Confidence 567999999999986432 22223333222 24678555 4999999753 111 23344443221
Q ss_pred -CC---CCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 72 -FP---GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 72 -~~---~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+. ....+++++||++|. ++.++++.|.+.
T Consensus 164 ~~~~~~~~~~~~~~~SA~~g~----------gv~~l~~~l~~~ 196 (198)
T 1f6b_A 164 SLKELNARPLEVFMCSVLKRQ----------GYGEGFRWMAQY 196 (198)
T ss_dssp CTTTCCSCCEEEEECBTTTTB----------SHHHHHHHHHTT
T ss_pred ccccccCceEEEEEEECCCCC----------CHHHHHHHHHHh
Confidence 11 124689999999987 899999998764
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.70 E-value=3.7e-05 Score=75.54 Aligned_cols=91 Identities=18% Similarity=0.156 Sum_probs=57.1
Q ss_pred cccCCEEEEEEECCCCCC--cchHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM--PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~--~qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++|+|+|+++... ........++... ++|. ++|+||+|+.+... .+ ++...+.........+++
T Consensus 230 ~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilV~NK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~~~ 303 (329)
T 3o47_A 230 FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL-LVFANKQDLPNAMN-AA----EITDKLGLHSLRHRNWYI 303 (329)
T ss_dssp HTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEE-EEEEECTTSTTCCC-HH----HHHHHHTCTTCCSSCEEE
T ss_pred hccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeE-EEEEECccCCcccC-HH----HHHHHhchhhhhcCCCEE
Confidence 567999999999976332 2222233333322 6665 45599999987411 11 233333222223345789
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.+|++.|.+.+
T Consensus 304 ~~vSAk~g~----------gi~el~~~l~~~l 325 (329)
T 3o47_A 304 QATCATSGD----------GLYEGLDWLSNQL 325 (329)
T ss_dssp EECBTTTTB----------THHHHHHHHHHHH
T ss_pred EEEECCCCc----------CHHHHHHHHHHHH
Confidence 999999987 8999999887654
No 107
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.70 E-value=0.0001 Score=67.47 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=56.3
Q ss_pred cccCCEEEEEEECCCCCCcchH--HHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHHH---------HHHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EIEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~--e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~i---------~~~i~~~l~~~~ 71 (502)
+..+|++++|+|++....-+.. ..+..+... ++|.++ |.||+|+.+.....+.+ .++...+.+.++
T Consensus 103 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil-v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 181 (214)
T 2j1l_A 103 YPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIV-VGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVG 181 (214)
T ss_dssp --CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEE-EEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEE-EEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcC
Confidence 5679999999999864221111 233333332 677555 59999998752221111 123344555544
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+ .+++++||++|. ++.++++.|.+.+
T Consensus 182 ~----~~~~~~SA~~g~----------gi~el~~~l~~~~ 207 (214)
T 2j1l_A 182 A----VAYLECSARLHD----------NVHAVFQEAAEVA 207 (214)
T ss_dssp C----SEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred C----CEEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 3 489999999987 8889888876543
No 108
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.70 E-value=6.1e-05 Score=66.41 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=56.5
Q ss_pred ccccCCEEEEEEECCCCCCcc-hHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 4 GAAQMDGAILVCSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~q-t~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.+..+|++++|+|++....-+ ..+.+..+.. .++|.+ +++||+|+.+...... ++...+.+..+ +++
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~---~~~~~~~~~~~-----~~~ 150 (180)
T 2g6b_A 80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALM-LLGNKVDSAHERVVKR---EDGEKLAKEYG-----LPF 150 (180)
T ss_dssp CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECCSTTSCCCSCH---HHHHHHHHHHT-----CCE
T ss_pred HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEECcccCcccccCH---HHHHHHHHHcC-----CeE
Confidence 457899999999998753322 2333444443 456654 4599999976311001 12333444433 469
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.+.+.+
T Consensus 151 ~~~Sa~~~~----------gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 151 METSAKTGL----------NVDLAFTAIAKEL 172 (180)
T ss_dssp EECCTTTCT----------THHHHHHHHHHHH
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHH
Confidence 999999987 8889988887654
No 109
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.69 E-value=5.6e-05 Score=68.42 Aligned_cols=89 Identities=19% Similarity=0.139 Sum_probs=54.9
Q ss_pred ccccCCEEEEEEECCCCCCcch-HHHHHHH-HH------hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQT-REHILLA-RQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 75 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt-~e~l~~~-~~------~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 75 (502)
.+..+|++++|+|+..+..-+. ...+..+ .. .++|.++| +||+|+.+.+... +++..+.... .
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv-~nK~Dl~~~~~~~----~~~~~~~~~~----~ 147 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL-GNKIDLENRQVAT----KRAQAWCYSK----N 147 (207)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEE-EECTTSSCCCSCH----HHHHHHHHHT----T
T ss_pred HHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEE-EECCCCcccccCH----HHHHHHHHhc----C
Confidence 4567999999999987533222 2222222 22 36775555 9999997531111 1233333321 1
Q ss_pred CCeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 76 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 76 ~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
..+++++||++|. ++.++++.|.+.+
T Consensus 148 ~~~~~~~Sa~~g~----------gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 148 NIPYFETSAKEAI----------NVEQAFQTIARNA 173 (207)
T ss_dssp SCCEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred CceEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3679999999987 8888888876544
No 110
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.69 E-value=0.00011 Score=71.13 Aligned_cols=86 Identities=30% Similarity=0.415 Sum_probs=56.6
Q ss_pred ccccCCEEEEEEECCCCC-Cc-chHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 4 GAAQMDGAILVCSAADGP-MP-QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~-~~-qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
.+..+|++|+|+|+++.. .. ...+.+..+...++|.++| .||+|+.+... . +++.++++.+.. . .++++
T Consensus 81 ~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv-~NK~DL~~~~~-v----~~~~~~~~~~~~--~-~~~~~ 151 (301)
T 1u0l_A 81 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMV-INKMDLYDEDD-L----RKVRELEEIYSG--L-YPIVK 151 (301)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEE-ECCGGGCCHHH-H----HHHHHHHHHHTT--T-SCEEE
T ss_pred ccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEE-EeHHHcCCchh-H----HHHHHHHHHHhh--h-CcEEE
Confidence 357899999999998753 22 2233455556678886555 99999987522 1 233444443331 1 57999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHh
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALD 108 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~ 108 (502)
+||++|. ++.++++.+.
T Consensus 152 ~SAktg~----------gv~~lf~~l~ 168 (301)
T 1u0l_A 152 TSAKTGM----------GIEELKEYLK 168 (301)
T ss_dssp CCTTTCT----------THHHHHHHHS
T ss_pred EECCCCc----------CHHHHHHHhc
Confidence 9999987 7777777653
No 111
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.69 E-value=8.3e-05 Score=71.30 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=56.8
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
..+..+|+++.|+||.........+.-.++ .+.|.+++ +||+|+++. +.. +...++++..+ .+++++
T Consensus 19 ~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilV-lNK~DL~~~-~~~----~~~~~~~~~~g-----~~~i~i 85 (282)
T 1puj_A 19 EKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIML-LNKADKADA-AVT----QQWKEHFENQG-----IRSLSI 85 (282)
T ss_dssp HHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEE-EECGGGSCH-HHH----HHHHHHHHTTT-----CCEEEC
T ss_pred HHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEE-EECcccCCH-HHH----HHHHHHHHhcC-----CcEEEE
Confidence 357889999999999987665432222222 46676655 999999985 221 23344554333 468999
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
||.+|. ++.+|++.+.+.+
T Consensus 86 SA~~~~----------gi~~L~~~i~~~l 104 (282)
T 1puj_A 86 NSVNGQ----------GLNQIVPASKEIL 104 (282)
T ss_dssp CTTTCT----------TGGGHHHHHHHHH
T ss_pred ECCCcc----------cHHHHHHHHHHHH
Confidence 999886 6777777665544
No 112
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.69 E-value=5.4e-05 Score=67.85 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=55.1
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|+.+... ....+.+..+... ++|.++ ++||+|+.+...... .+...+...++ .+++
T Consensus 86 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~il-v~nK~Dl~~~~~~~~---~~~~~~~~~~~-----~~~~ 156 (196)
T 3tkl_A 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL-VGNKCDLTTKKVVDY---TTAKEFADSLG-----IPFL 156 (196)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE-EEECTTCTTTCCSCH---HHHHHHHHHTT-----CCEE
T ss_pred HhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEE-EEECcccccccccCH---HHHHHHHHHcC-----CcEE
Confidence 467999999999987432 1223333444443 666555 599999976411101 12334444444 4799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++||++|. ++.++++.|.+.+
T Consensus 157 ~~Sa~~g~----------gv~~l~~~l~~~i 177 (196)
T 3tkl_A 157 ETSAKNAT----------NVEQSFMTMAAEI 177 (196)
T ss_dssp EECTTTCT----------THHHHHHHHHHHH
T ss_pred EEeCCCCC----------CHHHHHHHHHHHH
Confidence 99999987 8888777776543
No 113
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.69 E-value=4.8e-05 Score=66.21 Aligned_cols=89 Identities=16% Similarity=0.217 Sum_probs=56.8
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|++.... ....+.+..+... ++| ++++.||+|+.+.... ..++...+.+..+ .+++
T Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~ 146 (170)
T 1r2q_A 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV-IALSGNKADLANKRAV---DFQEAQSYADDNS-----LLFM 146 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHHTT-----CEEE
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCcccccc---CHHHHHHHHHHcC-----CeEE
Confidence 467999999999986532 2223334444443 455 4445899998653110 0123334444432 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++||++|. ++.++++.|.+.++
T Consensus 147 ~~Sa~~g~----------gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 147 ETSAKTSM----------NVNEIFMAIAKKLP 168 (170)
T ss_dssp ECCTTTCT----------THHHHHHHHHHTSC
T ss_pred EEeCCCCC----------CHHHHHHHHHHHHh
Confidence 99999987 89999999987654
No 114
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.68 E-value=6.4e-05 Score=66.60 Aligned_cols=89 Identities=20% Similarity=0.178 Sum_probs=51.6
Q ss_pred ccccCCEEEEEEECCCCCC-cchHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 4 GAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.+..+|++++|+|++.... ....+++..+... ++|. +++.||+|+.+..... .+++..+.+..+ +++
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~~~v~---~~~~~~~~~~~~-----~~~ 147 (183)
T 2fu5_C 77 YYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK-MILGNKCDVNDKRQVS---KERGEKLALDYG-----IKF 147 (183)
T ss_dssp TTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEE-EEEEEC--CCSCCCSC---HHHHHHHHHHHT-----CEE
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECccCCccCcCC---HHHHHHHHHHcC-----CeE
Confidence 4568999999999987432 2223344444443 5664 4559999997631100 123344444444 479
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.|.+.+
T Consensus 148 ~~~Sa~~~~----------~i~~l~~~l~~~i 169 (183)
T 2fu5_C 148 METSAKANI----------NVENAFFTLARDI 169 (183)
T ss_dssp EECCC---C----------CHHHHHHHHHHHH
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHH
Confidence 999999987 8888888876543
No 115
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.67 E-value=3.2e-05 Score=68.58 Aligned_cols=87 Identities=25% Similarity=0.297 Sum_probs=53.9
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHH----HHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLA----RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~----~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|+++...-+ ..+.+..+ ...++|.++ +.||+|+.+...... +++..+.+..+ .++
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il-v~nK~Dl~~~~~v~~---~~~~~~~~~~~-----~~~ 157 (183)
T 3kkq_A 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL-VANKVDLMHLRKVTR---DQGKEMATKYN-----IPY 157 (183)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEE-EEECTTCSTTCCSCH---HHHHHHHHHHT-----CCE
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE-EEECCCchhccCcCH---HHHHHHHHHhC-----CeE
Confidence 35689999999998742211 12222222 235677555 599999976311101 23344555444 469
Q ss_pred EEcccc-ccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAK-LALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~-~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++||+ +|. ++.++++.|.+.
T Consensus 158 ~~~Sa~~~~~----------~v~~l~~~l~~~ 179 (183)
T 3kkq_A 158 IETSAKDPPL----------NVDKTFHDLVRV 179 (183)
T ss_dssp EEEBCSSSCB----------SHHHHHHHHHHH
T ss_pred EEeccCCCCC----------CHHHHHHHHHHH
Confidence 999999 887 888988887653
No 116
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.66 E-value=4.9e-05 Score=66.24 Aligned_cols=87 Identities=21% Similarity=0.153 Sum_probs=55.2
Q ss_pred cccCCEEEEEEECCCCCCc-chHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMP-QTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~-qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|+.....- ...+.+..+... ++|. ++++||+|+.+..... ++...+.+..+ .+++
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~~~~~----~~~~~~~~~~~-----~~~~ 142 (170)
T 1g16_A 73 YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQL-LLVGNKSDMETRVVTA----DQGEALAKELG-----IPFI 142 (170)
T ss_dssp HTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTCTTCCSCH----HHHHHHHHHHT-----CCEE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECccCCcCccCH----HHHHHHHHHcC-----CeEE
Confidence 4678999999999864322 223344444433 5664 5559999995431111 12334444444 4699
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++||++|. ++.++++.|.+.+
T Consensus 143 ~~Sa~~~~----------gv~~l~~~l~~~~ 163 (170)
T 1g16_A 143 ESSAKNDD----------NVNEIFFTLAKLI 163 (170)
T ss_dssp ECBTTTTB----------SHHHHHHHHHHHH
T ss_pred EEECCCCC----------CHHHHHHHHHHHH
Confidence 99999987 8888888876644
No 117
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.66 E-value=7e-05 Score=65.82 Aligned_cols=89 Identities=18% Similarity=0.112 Sum_probs=55.4
Q ss_pred ccccCCEEEEEEECCCCCCcch-HHHHHHHHH-------hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQT-REHILLARQ-------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 75 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt-~e~l~~~~~-------~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 75 (502)
.+..+|++++|+|++....-+. ...+..+.. .++|.++| +||+|+.+.+... +++..+++...
T Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v-~nK~Dl~~~~~~~----~~~~~~~~~~~---- 146 (177)
T 1wms_A 76 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL-GNKIDISERQVST----EEAQAWCRDNG---- 146 (177)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEE-EECTTCSSCSSCH----HHHHHHHHHTT----
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEE-EECCcccccccCH----HHHHHHHHhcC----
Confidence 3567999999999987543222 222222222 56675554 9999997431111 23344444222
Q ss_pred CCeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 76 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 76 ~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
..+++++||++|. ++.++++.+.+.+
T Consensus 147 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 172 (177)
T 1wms_A 147 DYPYFETSAKDAT----------NVAAAFEEAVRRV 172 (177)
T ss_dssp CCCEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred CceEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3679999999987 8888888876643
No 118
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.65 E-value=0.00014 Score=65.59 Aligned_cols=92 Identities=18% Similarity=0.070 Sum_probs=56.8
Q ss_pred cccCCEEEEEEECCCCCCcchH--HHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHH---------HHHHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKADMVDDEELLEL---------VEIEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~--e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~---------i~~~i~~~l~~~~ 71 (502)
+..+|++++|+|++....-+.. ..+..+... ++|.++| .||+|+.+....... ..++...+.+.++
T Consensus 89 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv-~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (201)
T 2q3h_A 89 YTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILV-GTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK 167 (201)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEE-EECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE-EECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC
Confidence 5679999999999864322221 233334433 7785555 999999753111110 0123344444444
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+ .+++++||++|. ++.++++.|.+.+
T Consensus 168 ~----~~~~~~Sa~~g~----------gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 168 A----ASYIECSALTQK----------NLKEVFDAAIVAG 193 (201)
T ss_dssp C----SEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred C----cEEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 3 479999999987 8888888876543
No 119
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.65 E-value=5.2e-05 Score=67.06 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=53.1
Q ss_pred cccCCEEEEEEECCCCCCcc-hH----HHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TR----EHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~----e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...+|++++|+|+++...-+ .. +.+..+...++|.++| .||+|+.+.... ..+++..+.+..+ .++
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv-~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~ 145 (181)
T 3t5g_A 75 SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLV-GNKKDLHMERVI---SYEEGKALAESWN-----AAF 145 (181)
T ss_dssp TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEE-EECTTCTTTCCS---CHHHHHHHHHHTT-----CEE
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEE-EECccchhccee---cHHHHHHHHHHhC-----CcE
Confidence 45799999999998632111 11 1112222346785555 999999653111 0123444555544 479
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.+.+.+
T Consensus 146 ~~~Sa~~~~----------~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 146 LESSAKENQ----------TAVDVFRRIILEA 167 (181)
T ss_dssp EECCTTSHH----------HHHHHHHHHHHHH
T ss_pred EEEecCCCC----------CHHHHHHHHHHHH
Confidence 999999987 8888888876654
No 120
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.65 E-value=0.00011 Score=64.37 Aligned_cols=88 Identities=24% Similarity=0.212 Sum_probs=54.0
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHHh----CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQV----GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~----~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
...+|++++|+|++.... ....+.+..+... ++|.++ +.||+|+.+..+... ++...+....+ .++
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piil-v~NK~Dl~~~~~v~~---~~~~~~~~~~~-----~~~ 145 (175)
T 2nzj_A 75 LQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIIL-VGNKADLARCREVSV---EEGRACAVVFD-----CKF 145 (175)
T ss_dssp TTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEE-EEECTTCTTTCCSCH---HHHHHHHHHHT-----SEE
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEE-EEEChhhccccccCH---HHHHHHHHHcC-----CeE
Confidence 356899999999986322 1122333334433 778555 499999976411100 12233333333 579
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.|.+.+
T Consensus 146 ~~~Sa~~g~----------gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 146 IETSATLQH----------NVAELFEGVVRQL 167 (175)
T ss_dssp EECBTTTTB----------SHHHHHHHHHHHH
T ss_pred EEEecCCCC----------CHHHHHHHHHHHH
Confidence 999999987 8889888886543
No 121
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.64 E-value=7.7e-05 Score=64.79 Aligned_cols=87 Identities=26% Similarity=0.251 Sum_probs=51.8
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|+++... ......+..+.. .++|.++| .||+|+.+...... ++...+....+ .++
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv-~nK~Dl~~~~~~~~---~~~~~~~~~~~-----~~~ 140 (166)
T 3q72_A 70 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILV-GNKSDLVRSREVSV---DEGRACAVVFD-----CKF 140 (166)
T ss_dssp ---CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEE-EECTTCCSSCCSCH---HHHHHHHHHTT-----CEE
T ss_pred hhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEE-EeccccccccccCH---HHHHHHHHHhC-----CcE
Confidence 467899999999986321 112223333333 36785555 99999976411101 12233333333 589
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++||++|. ++.++++.+.+.
T Consensus 141 ~~~Sa~~~~----------gi~~l~~~l~~~ 161 (166)
T 3q72_A 141 IETSAALHH----------NVQALFEGVVRQ 161 (166)
T ss_dssp EECBGGGTB----------SHHHHHHHHHHH
T ss_pred EEeccCCCC----------CHHHHHHHHHHH
Confidence 999999987 889998887653
No 122
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.63 E-value=6.1e-05 Score=67.43 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=55.1
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|+++... ....+.+..+.. .++|. +++.||+|+.+...... ++...+.+..+ .+++
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~-----~~~~ 163 (191)
T 3dz8_A 93 YRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQV-ILVGNKCDMEEERVVPT---EKGQLLAEQLG-----FDFF 163 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTCGGGCCSCH---HHHHHHHHHHT-----CEEE
T ss_pred HccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCCCccccccCH---HHHHHHHHHcC-----CeEE
Confidence 567999999999986322 222334444544 35664 45599999965311101 12333444443 4799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++||++|. ++.++++.|.+.
T Consensus 164 ~~Sa~~~~----------gi~~l~~~l~~~ 183 (191)
T 3dz8_A 164 EASAKENI----------SVRQAFERLVDA 183 (191)
T ss_dssp ECBTTTTB----------SHHHHHHHHHHH
T ss_pred EEECCCCC----------CHHHHHHHHHHH
Confidence 99999987 888888887654
No 123
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.63 E-value=5.5e-05 Score=66.49 Aligned_cols=89 Identities=20% Similarity=0.204 Sum_probs=56.0
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|++.... ......+..+.. .++|. ++++||+|+.+..... .++...+.+..+ .+++
T Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~~~~ 154 (179)
T 2y8e_A 84 IRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVII-MLVGNKTDLSDKRQVS---TEEGERKAKELN-----VMFI 154 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEE-EEEEECGGGGGGCCSC---HHHHHHHHHHHT-----CEEE
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECCcccccCcCC---HHHHHHHHHHcC-----CeEE
Confidence 457999999999986422 222233333332 36664 4559999997531110 012233344333 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++||++|. ++.++++.|.+.++
T Consensus 155 ~~Sa~~~~----------~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 155 ETSAKAGY----------NVKQLFRRVAAALP 176 (179)
T ss_dssp EEBTTTTB----------SHHHHHHHHHHTCC
T ss_pred EEeCCCCC----------CHHHHHHHHHHHHh
Confidence 99999987 89999999987664
No 124
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.63 E-value=7.4e-05 Score=64.85 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=54.8
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|++.... ......+..+.. .++|.++| +||+|+.+.... ..+++..+.+.++ ..++
T Consensus 72 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv-~nK~Dl~~~~~~---~~~~~~~~~~~~~----~~~~ 143 (167)
T 1c1y_A 72 MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILV-GNKCDLEDERVV---GKEQGQNLARQWC----NCAF 143 (167)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEE-EECTTCGGGCCS---CHHHHHHHHHHTT----SCEE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEE-EECccccccccC---CHHHHHHHHHHcc----CCcE
Confidence 346899999999986321 111223333332 37775554 999999753111 0123344444432 3689
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++||++|. ++.++++.|.+.
T Consensus 144 ~~~Sa~~~~----------gi~~l~~~l~~~ 164 (167)
T 1c1y_A 144 LESSAKSKI----------NVNEIFYDLVRQ 164 (167)
T ss_dssp EECBTTTTB----------SHHHHHHHHHHH
T ss_pred EEecCCCCC----------CHHHHHHHHHHH
Confidence 999999987 899999888654
No 125
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.62 E-value=9.2e-05 Score=73.09 Aligned_cols=90 Identities=17% Similarity=0.081 Sum_probs=54.8
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCC--CCeEEEcc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN--DIPIIKGS 83 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~--~~~ii~iS 83 (502)
..+|++++|+|+..+...|+... ...++|.++| +||+|+.+. ..+....+++...+..+..... ..+++++|
T Consensus 168 ~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv-~NK~Dl~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iS 241 (341)
T 2p67_A 168 RMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIV-INKDDGDNH-TNVAIARHMYESALHILRRKYDEWQPRVLTCS 241 (341)
T ss_dssp TTCSEEEEEECC------CCCCH----HHHHHCSEEE-ECCCCTTCH-HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECB
T ss_pred HhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEE-EECCCCCCh-HHHHHHHHHHHHHHHhccccccCCCCcEEEee
Confidence 57999999999987643332211 1235676665 999999874 2233344455555544331101 35789999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
|++|. ++.+|++.|.+.+
T Consensus 242 A~~g~----------gi~~L~~~l~~~~ 259 (341)
T 2p67_A 242 ALEKR----------GIDEIWHAIIDFK 259 (341)
T ss_dssp GGGTB----------SHHHHHHHHHHHH
T ss_pred CCCCC----------CHHHHHHHHHHHH
Confidence 99987 8888888887644
No 126
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.62 E-value=0.00014 Score=68.62 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=53.8
Q ss_pred cCCEEEEEEECCCC--CC-cchHHHHHHHH----HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 7 QMDGAILVCSAADG--PM-PQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 7 ~~D~ailvVda~~g--~~-~qt~e~l~~~~----~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.||++|||+|+++. .. ....+.+..+. ..++|.++| .||+|+.+. ... ++...+.+... ..++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV-~NK~Dl~~~-~~v----~~~~~~~~~~~----~~~~ 231 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVV-LTKCDEGVE-RYI----RDAHTFALSKK----NLQV 231 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEE-EECGGGBCH-HHH----HHHHHHHHTSS----SCCE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEE-EEccccccc-HHH----HHHHHHHHhcC----CCeE
Confidence 69999999999874 22 22223333332 246785554 999999764 211 34444544321 3579
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+.+||++|. ++.++++.|.+.
T Consensus 232 ~e~SAk~g~----------gv~elf~~l~~~ 252 (255)
T 3c5h_A 232 VETSARSNV----------NVDLAFSTLVQL 252 (255)
T ss_dssp EECBTTTTB----------SHHHHHHHHHHH
T ss_pred EEEECCCCC----------CHHHHHHHHHHH
Confidence 999999987 889998887653
No 127
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.62 E-value=6.9e-05 Score=64.74 Aligned_cols=86 Identities=21% Similarity=0.221 Sum_probs=54.7
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHHh----CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQV----GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~----~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|+.+... ....+.+..+... ++|.+++ +||+|+.+.+.. .+++..+.+..+ .++
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv-~nK~Dl~~~~~~----~~~~~~~~~~~~-----~~~ 141 (166)
T 2ce2_X 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV-GNKSDLAARTVE----SRQAQDLARSYG-----IPY 141 (166)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEE-EECTTCSCCCSC----HHHHHHHHHHHT-----CCE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEE-EEchhhhhcccC----HHHHHHHHHHcC-----CeE
Confidence 456899999999986422 1123333333332 6785555 999999763111 123334444444 469
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++||++|. ++.++++.|.+.
T Consensus 142 ~~~Sa~~~~----------gi~~l~~~l~~~ 162 (166)
T 2ce2_X 142 IETSAKTRQ----------GVEDAFYTLVRE 162 (166)
T ss_dssp EEECTTTCT----------THHHHHHHHHHH
T ss_pred EEecCCCCC----------CHHHHHHHHHHH
Confidence 999999987 888998888654
No 128
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.62 E-value=8.1e-05 Score=76.78 Aligned_cols=83 Identities=22% Similarity=0.200 Sum_probs=58.3
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
+..||++|+|+|++.+...++.+.+..+ .+.|.++ |+||+|+.+... . +++..++ +. ..+++++||
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piiv-V~NK~DL~~~~~-~----~~~~~~~---~~---~~~~i~iSA 386 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLV-VINKVDVVEKIN-E----EEIKNKL---GT---DRHMVKISA 386 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEE-EEEECSSCCCCC-H----HHHHHHH---TC---STTEEEEEG
T ss_pred hhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEE-EEECcccccccC-H----HHHHHHh---cC---CCcEEEEEC
Confidence 4579999999999988777766665554 3677555 599999975311 1 1233333 21 357999999
Q ss_pred cccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 85 KLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 85 ~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++|. ++.+|++.|.+.+
T Consensus 387 ktg~----------Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 387 LKGE----------GLEKLEESIYRET 403 (482)
T ss_dssp GGTC----------CHHHHHHHHHHHT
T ss_pred CCCC----------CHHHHHHHHHHHH
Confidence 9987 8888888887654
No 129
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.61 E-value=2.5e-05 Score=74.00 Aligned_cols=84 Identities=19% Similarity=0.240 Sum_probs=56.6
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcccc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 85 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~ 85 (502)
..+|++++|+|++.. ......+..+..+++|.+++ +||+|+.+.... . .+...+.+.++ +|++++||+
T Consensus 82 ~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv-~NK~Dl~~~~~i-~---~~~~~l~~~lg-----~~vi~~SA~ 149 (258)
T 3a1s_A 82 GDADLVILVADSVNP--EQSLYLLLEILEMEKKVILA-MTAIDEAKKTGM-K---IDRYELQKHLG-----IPVVFTSSV 149 (258)
T ss_dssp SCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEE-EECHHHHHHTTC-C---BCHHHHHHHHC-----SCEEECCTT
T ss_pred cCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEE-EECcCCCCccch-H---HHHHHHHHHcC-----CCEEEEEee
Confidence 478999999999863 23334445566789996655 999998543110 0 11233333444 579999999
Q ss_pred ccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 86 LALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 86 ~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+|. ++.+|++.+.+.+
T Consensus 150 ~g~----------gi~el~~~i~~~~ 165 (258)
T 3a1s_A 150 TGE----------GLEELKEKIVEYA 165 (258)
T ss_dssp TCT----------THHHHHHHHHHHH
T ss_pred CCc----------CHHHHHHHHHHHh
Confidence 987 8889988887654
No 130
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.61 E-value=0.00032 Score=63.57 Aligned_cols=92 Identities=17% Similarity=0.198 Sum_probs=66.2
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcccc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 85 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~ 85 (502)
..+|.+++++|+..+....+.+....+...++|.+++ .||+|+.+..++ +.....+..++..... ..+++|+||+
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v-~nK~D~~s~~~~-~~~~~~~~~~~~~~~~---~~~~~~~Sal 181 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL-LTKADKLASGAR-KAQLNMVREAVLAFNG---DVQVETFSSL 181 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEE-EECGGGSCHHHH-HHHHHHHHHHHGGGCS---CEEEEECBTT
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEE-EecccCCCchhH-HHHHHHHHHHHHhcCC---CCceEEEeec
Confidence 4678999999999887766666667777889996665 899999875221 2223345555654432 3678999999
Q ss_pred ccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 86 LALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 86 ~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++. ++.++++.|.+.++
T Consensus 182 ~~~----------~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 182 KKQ----------GVDKLRQKLDTWFS 198 (210)
T ss_dssp TTB----------SHHHHHHHHHHHHC
T ss_pred CCC----------CHHHHHHHHHHHHh
Confidence 987 88888888877553
No 131
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.61 E-value=2.6e-05 Score=68.15 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=54.2
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccc
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKL 86 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~ 86 (502)
.+|++++|+|+..- .+..+.+..+...++|.++| .||+|+.+... .. .+...+.+.++ .+++++||++
T Consensus 81 ~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv-~nK~Dl~~~~~-~~---~~~~~~~~~~~-----~~~~~~SA~~ 148 (165)
T 2wji_A 81 KPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLA-LNKMDLAKSLG-IE---IDVDKLEKILG-----VKVVPLSAAK 148 (165)
T ss_dssp CCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEE-EECHHHHHHTT-CC---CCHHHHHHHHT-----SCEEECBGGG
T ss_pred CCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEE-EEchHhccccC-hh---hHHHHHHHHhC-----CCEEEEEcCC
Confidence 68999999999751 22333445556678886555 99999854211 00 01222333333 4699999999
Q ss_pred cccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 87 ALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 87 g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
|. ++.++++.+.+.+
T Consensus 149 ~~----------~v~~l~~~l~~~~ 163 (165)
T 2wji_A 149 KM----------GIEELKKAISIAV 163 (165)
T ss_dssp TB----------SHHHHHHHHHHHT
T ss_pred CC----------CHHHHHHHHHHHh
Confidence 87 8999999887644
No 132
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.61 E-value=2.2e-05 Score=70.49 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=55.7
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|++++...+. .+.+..+... ++|. ++++||+|+.+..+.. .+++..+.+.+. ..+++
T Consensus 96 ~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilV~NK~Dl~~~~~v~---~~~~~~~~~~~~----~~~~~ 167 (192)
T 2il1_A 96 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAEL-LLVGNKLDCETDREIT---RQQGEKFAQQIT----GMRFC 167 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECGGGGGGCCSC---HHHHHHHHHTST----TCEEE
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECcccccccccC---HHHHHHHHHhcC----CCeEE
Confidence 356899999999987543332 2333444443 5664 5559999996531110 122334444331 36899
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++||++|. ++.++++.|.+.
T Consensus 168 ~~SA~~g~----------gi~~l~~~l~~~ 187 (192)
T 2il1_A 168 EASAKDNF----------NVDEIFLKLVDD 187 (192)
T ss_dssp ECBTTTTB----------SHHHHHHHHHHH
T ss_pred EEeCCCCC----------CHHHHHHHHHHH
Confidence 99999987 888888887653
No 133
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.60 E-value=0.0001 Score=64.94 Aligned_cols=90 Identities=19% Similarity=0.215 Sum_probs=55.0
Q ss_pred ccccCCEEEEEEECCCCCCcch-HHHHHHHHH-------hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQT-REHILLARQ-------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 75 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt-~e~l~~~~~-------~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 75 (502)
.+..+|++++|+|+.+...-+. .+.+..+.. .++|.++| +||+|+.+.+... ..+++..+.+...
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv-~nK~Dl~~~~~~v--~~~~~~~~~~~~~---- 150 (182)
T 1ky3_A 78 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL-GNKIDAEESKKIV--SEKSAQELAKSLG---- 150 (182)
T ss_dssp CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEE-EECTTSCGGGCCS--CHHHHHHHHHHTT----
T ss_pred HhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEE-EECCccccccccC--CHHHHHHHHHhcC----
Confidence 4568999999999987533222 222322222 56775555 9999996531100 0122333443222
Q ss_pred CCeEEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 76 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 76 ~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
..+++++||++|. ++.++++.|.+.
T Consensus 151 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~ 175 (182)
T 1ky3_A 151 DIPLFLTSAKNAI----------NVDTAFEEIARS 175 (182)
T ss_dssp SCCEEEEBTTTTB----------SHHHHHHHHHHH
T ss_pred CCeEEEEecCCCC----------CHHHHHHHHHHH
Confidence 3679999999987 888888887653
No 134
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.60 E-value=7.5e-05 Score=66.35 Aligned_cols=87 Identities=21% Similarity=0.185 Sum_probs=54.1
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|++....-+ ....+..+.. .++|.++| +||+|+.+..... +++..+.+..+ .++
T Consensus 73 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v-~nK~Dl~~~~~~~----~~~~~~~~~~~-----~~~ 142 (189)
T 4dsu_A 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLV-GNKCDLPSRTVDT----KQAQDLARSYG-----IPF 142 (189)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEE-EECTTSSSCSSCH----HHHHHHHHHHT-----CCE
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEE-EECccCcccccCH----HHHHHHHHHcC-----CeE
Confidence 45689999999998642211 1222222322 36775555 9999997641111 12333444433 469
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.|.+.+
T Consensus 143 ~~~Sa~~g~----------gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 143 IETSAKTRQ----------GVDDAFYTLVREI 164 (189)
T ss_dssp EECCTTTCT----------THHHHHHHHHHHH
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHH
Confidence 999999987 8888888876654
No 135
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.60 E-value=4.2e-05 Score=67.28 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=55.5
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|++.....+. ...+..+.. .++| +++++||+|+.+.... ..+++..+++..+ .+++
T Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~ 155 (179)
T 1z0f_A 85 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDV---TYEEAKQFAEENG-----LLFL 155 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT-----CEEE
T ss_pred hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcC-----CEEE
Confidence 457899999999987533222 223333333 4566 4555999999653110 0123444555443 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++||++|. ++.++++.+.+.
T Consensus 156 ~~Sa~~~~----------gi~~l~~~l~~~ 175 (179)
T 1z0f_A 156 EASAKTGE----------NVEDAFLEAAKK 175 (179)
T ss_dssp ECCTTTCT----------THHHHHHHHHHH
T ss_pred EEeCCCCC----------CHHHHHHHHHHH
Confidence 99999987 888998887654
No 136
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.59 E-value=0.00011 Score=65.42 Aligned_cols=88 Identities=22% Similarity=0.154 Sum_probs=55.5
Q ss_pred ccccCCEEEEEEECCCCCCcc-hHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 4 GAAQMDGAILVCSAADGPMPQ-TREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~q-t~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
.+..+|++++|+|+......+ ....+..+.. .++|.++| +||+|+.+.+... +++.++.+..+ ++
T Consensus 89 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv-~nK~Dl~~~~~~~----~~~~~~~~~~~-----~~ 158 (190)
T 3con_A 89 YMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLV-GNKCDLPTRTVDT----KQAHELAKSYG-----IP 158 (190)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEE-EECTTCSCCCSCH----HHHHHHHHHHT-----CC
T ss_pred hhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEE-EECCcCCcccCCH----HHHHHHHHHcC-----Ce
Confidence 356799999999998753222 2223333333 26775555 9999997631111 23344454444 46
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++++||++|. ++.++++.|.+.+
T Consensus 159 ~~~~Sa~~~~----------gi~~l~~~l~~~~ 181 (190)
T 3con_A 159 FIETSAKTRQ----------GVEDAFYTLVREI 181 (190)
T ss_dssp EEECCTTTCT----------THHHHHHHHHHHH
T ss_pred EEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 9999999987 8888888876543
No 137
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.59 E-value=7.8e-05 Score=64.77 Aligned_cols=87 Identities=21% Similarity=0.208 Sum_probs=54.7
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH--hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
+..+|++++|+|++.... ......+..+.. .++|.++| +||+|+.+..... .+++..+.+..+ .++++
T Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv-~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~~~~~ 145 (168)
T 1z2a_A 75 YRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALV-QNKIDLLDDSCIK---NEEAEGLAKRLK-----LRFYR 145 (168)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEE-EECGGGGGGCSSC---HHHHHHHHHHHT-----CEEEE
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEE-EECcccCcccccC---HHHHHHHHHHcC-----CeEEE
Confidence 457999999999987432 222233333332 37775555 9999997531110 123344444444 47999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+||++|. ++.++++.|.+.
T Consensus 146 ~Sa~~~~----------~i~~l~~~l~~~ 164 (168)
T 1z2a_A 146 TSVKEDL----------NVSEVFKYLAEK 164 (168)
T ss_dssp CBTTTTB----------SSHHHHHHHHHH
T ss_pred EecCCCC----------CHHHHHHHHHHH
Confidence 9999987 788888887653
No 138
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.58 E-value=0.00012 Score=64.49 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=54.5
Q ss_pred ccccCCEEEEEEECCCCCCcch-HHHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 4 GAAQMDGAILVCSAADGPMPQT-REHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt-~e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
.+..+|++++|+|++++...+. ...+..+... ++|. ++++||+|+.+...... .+...+....+ .+++
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~-----~~~~ 148 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCR-ILVGNKNDDPERKVVET---EDAYKFAGQMG-----IQLF 148 (181)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEE-EEEEECTTCGGGCCSCH---HHHHHHHHHHT-----CCEE
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECCCCchhcccCH---HHHHHHHHHcC-----CeEE
Confidence 4567999999999987432222 1223333322 3564 55599999875311000 12333444433 4699
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++||++|. ++.++++.|.+.+
T Consensus 149 ~~Sa~~~~----------gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 149 ETSAKENV----------NVEEMFNCITELV 169 (181)
T ss_dssp ECBTTTTB----------SHHHHHHHHHHHH
T ss_pred EEECCCCC----------CHHHHHHHHHHHH
Confidence 99999987 8888888876543
No 139
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.57 E-value=4.1e-05 Score=67.52 Aligned_cols=82 Identities=20% Similarity=0.169 Sum_probs=56.6
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
...+|++++|+|++.....+..+.+..+... ++|.++| +||+|+.+... .+.+ . ...++++
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv-~NK~Dl~~~~~----------~~~~-~----~~~~~~~ 144 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVV-RNKADITGETL----------GMSE-V----NGHALIR 144 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEE-EECHHHHCCCC----------EEEE-E----TTEEEEE
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEE-EECccCCcchh----------hhhh-c----cCCceEE
Confidence 4679999999999987765555555544443 5775555 99999854200 0011 0 1368999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+||++|. ++.+|++.|.+.+.
T Consensus 145 ~SA~~g~----------gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 145 LSARTGE----------GVDVLRNHLKQSMG 165 (172)
T ss_dssp CCTTTCT----------THHHHHHHHHHHC-
T ss_pred EeCCCCC----------CHHHHHHHHHHHhh
Confidence 9999987 89999999887664
No 140
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.57 E-value=2.6e-05 Score=67.68 Aligned_cols=87 Identities=23% Similarity=0.192 Sum_probs=53.4
Q ss_pred cccCCEEEEEEECCCCCCc-chHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMP-QTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~-qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|+.+.... ...+.+..+.. .++|.++ ++||+|+.+..+... .+...+.+..+ .++
T Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil-v~nK~Dl~~~~~~~~---~~~~~~~~~~~-----~~~ 142 (167)
T 1kao_A 72 IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVIL-VGNKVDLESEREVSS---SEGRALAEEWG-----CPF 142 (167)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEE-EEECGGGGGGCCSCH---HHHHHHHHHHT-----SCE
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEE-EEECCcccccccCCH---HHHHHHHHHhC-----CCE
Confidence 3568999999999864221 11222222222 3678555 499999865311101 12333444443 479
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++||++|. ++.++++.|.+.
T Consensus 143 ~~~Sa~~~~----------gi~~l~~~l~~~ 163 (167)
T 1kao_A 143 METSAKSKT----------MVDELFAEIVRQ 163 (167)
T ss_dssp EEECTTCHH----------HHHHHHHHHHHH
T ss_pred EEecCCCCc----------CHHHHHHHHHHH
Confidence 999999987 889999887653
No 141
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.57 E-value=5.5e-05 Score=67.58 Aligned_cols=91 Identities=14% Similarity=0.167 Sum_probs=52.8
Q ss_pred cccCCEEEEEEECCCCCCc-chHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMP-QTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~-qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|++....- ...+.+..+.. .++|.++ ++||+|+.+..+.. .++...+.+..+ .++
T Consensus 91 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piil-v~nK~Dl~~~~~v~---~~~~~~~~~~~~-----~~~ 161 (189)
T 1z06_A 91 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRIL-VGNKCDLRSAIQVP---TDLAQKFADTHS-----MPL 161 (189)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEE-EEECTTCGGGCCSC---HHHHHHHHHHTT-----CCE
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEE-EEECccccccceeC---HHHHHHHHHHcC-----CEE
Confidence 4679999999999863221 11222333322 3677555 59999996531110 122334444433 479
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|.+. .++.++++.|.+.+
T Consensus 162 ~~~Sa~~~~~~-------~~i~~l~~~l~~~i 186 (189)
T 1z06_A 162 FETSAKNPNDN-------DHVEAIFMTLAHKL 186 (189)
T ss_dssp EECCSSSGGGG-------SCHHHHHHHHC---
T ss_pred EEEeCCcCCcc-------cCHHHHHHHHHHHH
Confidence 99999998210 18889998887654
No 142
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.56 E-value=7.9e-05 Score=67.75 Aligned_cols=87 Identities=21% Similarity=0.171 Sum_probs=53.7
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|+..... ....+.+..+... ++|. ++|+||+|+.+..... ++...+.+..+ ++++
T Consensus 90 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~~~~~----~~~~~~~~~~~-----~~~~ 159 (213)
T 3cph_A 90 YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQL-LLVGNKSDMETRVVTA----DQGEALAKELG-----IPFI 159 (213)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEE-EEEEECTTCSSCCSCH----HHHHHHHHHHT-----CCEE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCCCcccccCH----HHHHHHHHHcC-----CEEE
Confidence 467999999999986432 1223344444433 5664 5559999995431111 12333444444 3699
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++||++|. ++.++++.|.+.+
T Consensus 160 ~~Sa~~~~----------gi~~l~~~l~~~~ 180 (213)
T 3cph_A 160 ESSAKNDD----------NVNEIFFTLAKLI 180 (213)
T ss_dssp ECBTTTTB----------SSHHHHHHHHHHH
T ss_pred EEeCCCCC----------CHHHHHHHHHHHH
Confidence 99999987 7777777765543
No 143
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.56 E-value=7.6e-05 Score=67.55 Aligned_cols=89 Identities=20% Similarity=0.200 Sum_probs=56.5
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|+++... ....+.+..+.. .++|. +++.||+|+.+.... ..+++.++++..++ .+++
T Consensus 99 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~NK~Dl~~~~~v---~~~~~~~~~~~~~~----~~~~ 170 (201)
T 2hup_A 99 YRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ-LLIGNKSDLSELREV---SLAEAQSLAEHYDI----LCAI 170 (201)
T ss_dssp HTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTCGGGCCS---CHHHHHHHHHHTTC----SEEE
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCcccccccc---CHHHHHHHHHHcCC----CEEE
Confidence 467999999999986422 222334444443 34664 445999999753110 01234455555443 2799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++||++|. ++.++++.|.+.+
T Consensus 171 ~~SA~~g~----------gi~~l~~~l~~~i 191 (201)
T 2hup_A 171 ETSAKDSS----------NVEEAFLRVATEL 191 (201)
T ss_dssp ECBTTTTB----------SHHHHHHHHHHHH
T ss_pred EEeCCCCC----------CHHHHHHHHHHHH
Confidence 99999987 8888888876654
No 144
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.56 E-value=0.00015 Score=65.56 Aligned_cols=88 Identities=14% Similarity=0.013 Sum_probs=47.4
Q ss_pred ccccCCEEEEEEECCCCCC-cchHHHHHHHHH------hCCCeEEEEEEcCCCCC-hHHHHHHHHHHHHHHHhhcCCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPM-PQTREHILLARQ------VGVPYIVVFLNKADMVD-DEELLELVEIEIRELLNKYEFPGN 75 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~-~qt~e~l~~~~~------~~i~~iiv~iNK~D~~~-~~~~~~~i~~~i~~~l~~~~~~~~ 75 (502)
.+..+|++++|+|++.+.. ....+++..+.. .++|. ++++||+|+.+ .... ..+++..+++.++
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~v---~~~~~~~~~~~~~---- 164 (208)
T 2yc2_C 93 YWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRA-VLVANKTDLPPQRHQV---RLDMAQDWATTNT---- 164 (208)
T ss_dssp TCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEE-EEEEECC-------CC---CHHHHHHHHHHTT----
T ss_pred HHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcE-EEEEECcccchhhccC---CHHHHHHHHHHcC----
Confidence 3567999999999987543 222334444444 36664 55599999976 2111 0123455555544
Q ss_pred CCeEEEccccc-cccCCCCCCCcccHHHHHHHHhhc
Q psy15224 76 DIPIIKGSAKL-ALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 76 ~~~ii~iSa~~-g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
.+++++||++ |. ++.++++.|.+.
T Consensus 165 -~~~~~~Sa~~~~~----------gi~~l~~~i~~~ 189 (208)
T 2yc2_C 165 -LDFFDVSANPPGK----------DADAPFLSIATT 189 (208)
T ss_dssp -CEEEECCC-----------------CHHHHHHHHH
T ss_pred -CEEEEeccCCCCc----------CHHHHHHHHHHH
Confidence 5799999999 87 677777766543
No 145
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.56 E-value=0.00011 Score=66.22 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=53.7
Q ss_pred ccccCCEEEEEEECCCCCC-cchHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 4 GAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~-~qt~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.+..+|++++|+|+..+.. ......+..+.. .++|. ++++||+|+.+...... +++..+.+.++ +++
T Consensus 77 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~-----~~~ 147 (203)
T 1zbd_A 77 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQV-LLVGNKCDMEDERVVSS---ERGRQLADHLG-----FEF 147 (203)
T ss_dssp TGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEE-EEEEECTTCTTSCCSCH---HHHHHHHHHHT-----CEE
T ss_pred hhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECcccCcccccCH---HHHHHHHHHCC-----CeE
Confidence 3567999999999987432 112333444444 35664 55599999976311101 22334444444 479
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++||++|. ++.++++.|.+.
T Consensus 148 ~~~Sa~~~~----------gi~~l~~~l~~~ 168 (203)
T 1zbd_A 148 FEASAKDNI----------NVKQTFERLVDV 168 (203)
T ss_dssp EECBTTTTB----------SSHHHHHHHHHH
T ss_pred EEEECCCCC----------CHHHHHHHHHHH
Confidence 999999987 666666665543
No 146
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.54 E-value=0.00011 Score=65.65 Aligned_cols=87 Identities=17% Similarity=0.098 Sum_probs=54.7
Q ss_pred cccCCEEEEEEECCCCCCcc-hHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQ-TREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~q-t~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|++....-+ ....+..+... ++|. ++++||+|+.+..... .++...+.+..+ .+++
T Consensus 91 ~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~pi-ilv~nK~Dl~~~~~v~---~~~~~~~~~~~~-----~~~~ 161 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVI-MLIGNKSDLESRRDVK---REEGEAFAREHG-----LIFM 161 (191)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTCGGGCCSC---HHHHHHHHHHHT-----CEEE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECcccCCccccC---HHHHHHHHHHcC-----CEEE
Confidence 46799999999998643222 23344444443 6664 4559999996531100 122334444433 4799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++||++|. ++.++++.|.+.
T Consensus 162 ~~Sa~~~~----------gi~~l~~~l~~~ 181 (191)
T 2a5j_A 162 ETSAKTAC----------NVEEAFINTAKE 181 (191)
T ss_dssp EECTTTCT----------THHHHHHHHHHH
T ss_pred EEeCCCCC----------CHHHHHHHHHHH
Confidence 99999987 888888877653
No 147
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.53 E-value=8.6e-05 Score=66.38 Aligned_cols=88 Identities=18% Similarity=0.044 Sum_probs=55.3
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|+......+. ...+..+.. .++| +++++||+|+.+.+... ++...+.+..+ .++
T Consensus 85 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~-----~~~ 154 (195)
T 1x3s_A 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV-NMLVGNKIDKENREVDR----NEGLKFARKHS-----MLF 154 (195)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCE-EEEEEECTTSSSCCSCH----HHHHHHHHHTT-----CEE
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEEECCcCcccccCH----HHHHHHHHHcC-----CEE
Confidence 467999999999987432222 223333333 2455 45559999996531111 22344444433 579
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+++||++|. ++.++++.|.+.+.
T Consensus 155 ~~~Sa~~~~----------gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 155 IEASAKTCD----------GVQCAFEELVEKII 177 (195)
T ss_dssp EECCTTTCT----------THHHHHHHHHHHHH
T ss_pred EEecCCCCC----------CHHHHHHHHHHHHH
Confidence 999999987 88888888876553
No 148
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.53 E-value=5.8e-05 Score=71.40 Aligned_cols=95 Identities=12% Similarity=0.073 Sum_probs=62.7
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHh-----CCCeEEEEEE-cCCCCChHHHHHHHH----HHHHHHHhhcCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQV-----GVPYIVVFLN-KADMVDDEELLELVE----IEIRELLNKYEFP 73 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~-----~i~~iiv~iN-K~D~~~~~~~~~~i~----~~i~~~l~~~~~~ 73 (502)
++..+|++++|+|+.. +..++...+..+... +.|.+++ +| |+|+.+. ...+.+. .++..+++.++..
T Consensus 102 ~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~v-v~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~ 178 (260)
T 2xtp_A 102 SAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVL-FTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGR 178 (260)
T ss_dssp HTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEE-EECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTC
T ss_pred cCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEE-EEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCe
Confidence 4567999999999985 777777777777765 6676666 77 9999853 2111111 2344455554421
Q ss_pred CC-CCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 74 GN-DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 74 ~~-~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
.. ..+ +++||++|. ++.+|++.|.+.++
T Consensus 179 ~~~~~~-~~~SA~~~~----------gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 179 ICAFNN-RAEGSNQDD----------QVKELMDCIEDLLM 207 (260)
T ss_dssp EEECCT-TCCHHHHHH----------HHHHHHHHHHHHHH
T ss_pred EEEecC-cccccccHH----------HHHHHHHHHHHHHH
Confidence 00 112 788999987 88888888876654
No 149
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.52 E-value=5.2e-05 Score=68.56 Aligned_cols=89 Identities=20% Similarity=0.187 Sum_probs=53.7
Q ss_pred ccccCCEEEEEEECCCCCCcch-HHHHHHHH----HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 4 GAAQMDGAILVCSAADGPMPQT-REHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt-~e~l~~~~----~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
.+..+|++++|+|++....-+. ...+..+. ..++|.++| +||+|+.+...... .+...+.+..+ .+
T Consensus 92 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv-~nK~Dl~~~~~v~~---~~~~~~~~~~~-----~~ 162 (201)
T 3oes_A 92 FIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLV-GNKADLSPEREVQA---VEGKKLAESWG-----AT 162 (201)
T ss_dssp GTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEE-EECTTCGGGCCSCH---HHHHHHHHHHT-----CE
T ss_pred HHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEE-EECccCccccccCH---HHHHHHHHHhC-----Ce
Confidence 4567999999999986322111 12222222 236785554 99999975311101 12233444433 47
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++++||++|. ++.++++.|.+.+
T Consensus 163 ~~~~Sa~~~~----------~v~~l~~~l~~~i 185 (201)
T 3oes_A 163 FMESSARENQ----------LTQGIFTKVIQEI 185 (201)
T ss_dssp EEECCTTCHH----------HHHHHHHHHHHHH
T ss_pred EEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 9999999987 8888888876654
No 150
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.52 E-value=0.0001 Score=72.11 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=59.0
Q ss_pred ccccCCEEEEEEECCCCCCcchH--HHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHHH---------HHHHHHHHhhc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EIEIRELLNKY 70 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~--e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~i---------~~~i~~~l~~~ 70 (502)
.+..+|++++|+|+++...-+.. ..+..+... ++|.++| .||+|+.+.....+.. .++...+.+..
T Consensus 223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv-~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 301 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILV-GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 301 (332)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEE-EECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEE-EEchhcccccchhhhccccccccccHHHHHHHHHHc
Confidence 35689999999999875432222 233444444 7785555 9999996642211111 12334455544
Q ss_pred CCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 71 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 71 ~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++ .+++++||++|. ++.++++.|.+.+
T Consensus 302 ~~----~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 302 GA----VKYLECSALTQR----------GLKTVFDEAIRAV 328 (332)
T ss_dssp TC----SEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred CC----cEEEEecCCCCc----------CHHHHHHHHHHHH
Confidence 43 489999999987 8999998886643
No 151
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.52 E-value=7.4e-05 Score=65.11 Aligned_cols=89 Identities=19% Similarity=0.114 Sum_probs=56.1
Q ss_pred ccccCCEEEEEEECCCCCCc-chHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 4 GAAQMDGAILVCSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~-qt~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.+..+|++++|+|+.+...- ...+++..+.. .++|.+ +++||+|+.+.... ..++...+.+..+ .++
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~ 145 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLC-IVGNKIDLEKERHV---SIQEAESYAESVG-----AKH 145 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEE-EEEECGGGGGGCCS---CHHHHHHHHHHTT-----CEE
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEE-EEEECccccccccc---CHHHHHHHHHHcC-----CeE
Confidence 35679999999999874321 12223333332 466654 45999999763110 0123344555443 579
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.|.+.+
T Consensus 146 ~~~Sa~~~~----------gi~~l~~~l~~~~ 167 (170)
T 1z08_A 146 YHTSAKQNK----------GIEELFLDLCKRM 167 (170)
T ss_dssp EEEBTTTTB----------SHHHHHHHHHHHH
T ss_pred EEecCCCCC----------CHHHHHHHHHHHH
Confidence 999999987 8999998887643
No 152
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.51 E-value=0.00013 Score=66.69 Aligned_cols=92 Identities=12% Similarity=0.045 Sum_probs=57.8
Q ss_pred cccCCEEEEEEECCCCCCcch--HHHHHHHHHh--CCCeEEEEEEcCCCCChHHHHH---------HHHHHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPMPQT--REHILLARQV--GVPYIVVFLNKADMVDDEELLE---------LVEIEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt--~e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~---------~i~~~i~~~l~~~~ 71 (502)
+..+|++|+|+|++....-.. ...+..+... ++|.++ |.||+|+.+...... ...++...+.+..+
T Consensus 96 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil-v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 174 (214)
T 3q3j_B 96 YSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLL-IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG 174 (214)
T ss_dssp CTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEE-EEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred cCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEE-EEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC
Confidence 567999999999987432221 2334445444 667555 499999975211000 01123444555554
Q ss_pred CCCCCCeEEEccccccccCCCCCCCccc-HHHHHHHHhhcC
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQS-ILSLSKALDTYI 111 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~-i~~Ll~~l~~~~ 111 (502)
. .+++.+||++|. + +.++++.+.+.+
T Consensus 175 ~----~~~~e~SA~~g~----------g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 175 A----EIYLEGSAFTSE----------KSIHSIFRTASMLC 201 (214)
T ss_dssp C----SEEEECCTTTCH----------HHHHHHHHHHHHHH
T ss_pred C----CEEEEeccCCCc----------ccHHHHHHHHHHHH
Confidence 3 379999999987 7 888888876654
No 153
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.50 E-value=0.00011 Score=65.96 Aligned_cols=88 Identities=20% Similarity=0.184 Sum_probs=56.0
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH-----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~-----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
+..+|++++|+|++.... .....++..+.. .++|.++ ++||+|+.+.+... ++...+....+ .+
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piil-v~nK~Dl~~~~~~~----~~~~~~~~~~~-----~~ 146 (199)
T 2gf0_A 77 ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVML-VGNKCDETQREVDT----REAQAVAQEWK-----CA 146 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEE-EEECTTCSSCSSCH----HHHHHHHHHHT-----CE
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEE-EEECccCCccccCH----HHHHHHHHHhC-----Ce
Confidence 456899999999986322 122223333333 2677555 59999997631111 12233344333 47
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++++||++|. ++.+|++.|.+.+.
T Consensus 147 ~~~~Sa~~~~----------gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 147 FMETSAKMNY----------NVKELFQELLTLET 170 (199)
T ss_dssp EEECBTTTTB----------SHHHHHHHHHHHCS
T ss_pred EEEEecCCCC----------CHHHHHHHHHHHHh
Confidence 9999999987 89999999987664
No 154
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.50 E-value=3.7e-05 Score=73.35 Aligned_cols=84 Identities=18% Similarity=0.221 Sum_probs=56.3
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhC-CCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVG-VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~-i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
..+|++++|+|+..+ .+....+..+...+ +|.+++ +||+|+.+.... . .....+.+.++ .|++++||
T Consensus 80 ~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv-~NK~Dl~~~~~~-~---~~~~~l~~~lg-----~~~~~~Sa 147 (271)
T 3k53_A 80 GNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILV-LNKFDLLKKKGA-K---IDIKKMRKELG-----VPVIPTNA 147 (271)
T ss_dssp TCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEE-EECHHHHHHHTC-C---CCHHHHHHHHS-----SCEEECBG
T ss_pred cCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEE-EEChhcCccccc-H---HHHHHHHHHcC-----CcEEEEEe
Confidence 469999999999875 34555556667778 885554 999998643110 0 01222223333 57999999
Q ss_pred cccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 85 KLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 85 ~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
.+|. ++.+|++.+.+.+
T Consensus 148 ~~g~----------gi~~l~~~i~~~~ 164 (271)
T 3k53_A 148 KKGE----------GVEELKRMIALMA 164 (271)
T ss_dssp GGTB----------THHHHHHHHHHHH
T ss_pred CCCC----------CHHHHHHHHHHHH
Confidence 9987 7888888876644
No 155
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.50 E-value=0.00017 Score=62.68 Aligned_cols=86 Identities=26% Similarity=0.225 Sum_probs=53.6
Q ss_pred ccCCEEEEEEECCCCCC-cchHHHHHHHHHh----CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 6 AQMDGAILVCSAADGPM-PQTREHILLARQV----GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~-~qt~e~l~~~~~~----~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
..+|++++|+|++.... ....+.+..+... ++|.++| .||+|+.+.... ..++...+.+..+ .+++
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv-~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~ 144 (169)
T 3q85_A 74 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV-GNKSDLARSREV---SLEEGRHLAGTLS-----CKHI 144 (169)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEE-EECTTCGGGCCS---CHHHHHHHHHHTT-----CEEE
T ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEE-eeCcchhhcccC---CHHHHHHHHHHcC-----CcEE
Confidence 45899999999986321 1122233333332 6786555 999999753111 0123344444443 4799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++||++|. ++.++++.+.+.
T Consensus 145 ~~Sa~~~~----------~v~~l~~~l~~~ 164 (169)
T 3q85_A 145 ETSAALHH----------NTRELFEGAVRQ 164 (169)
T ss_dssp ECBTTTTB----------SHHHHHHHHHHH
T ss_pred EecCccCC----------CHHHHHHHHHHH
Confidence 99999987 888888887653
No 156
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.49 E-value=0.00014 Score=75.79 Aligned_cols=93 Identities=17% Similarity=0.099 Sum_probs=57.8
Q ss_pred ccccCCEEEEEEECCCCCCc--chHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 4 GAAQMDGAILVCSAADGPMP--QTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~--qt~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
.+..+|++|+|+|++....- ...+...++.. .++|.++| +||+|+.+... . .++...+..........+
T Consensus 386 ~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv-~NK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~ 459 (497)
T 3lvq_E 386 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF-ANKQDLPDAMK-P----HEIQEKLGLTRIRDRNWY 459 (497)
T ss_dssp GGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEE-EECCSSSSCCC-H----HHHHHHTTCTTCCSSCEE
T ss_pred HhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEE-EECCCCCcCCC-H----HHHHHHhchhhhhcCCeE
Confidence 35679999999999875321 11222222221 36775554 99999976411 1 123333322112223568
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++++||++|. ++.++++.|.+.+.
T Consensus 460 ~~~~SA~~g~----------gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 460 VQPSCATSGD----------GLYEGLTWLTSNYK 483 (497)
T ss_dssp EEECBTTTTB----------THHHHHHHHHHHCC
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 9999999998 99999999987664
No 157
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.62 E-value=1.5e-05 Score=72.25 Aligned_cols=90 Identities=16% Similarity=0.089 Sum_probs=54.2
Q ss_pred cccCCEEEEEEECCCCCCcchH--HHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHH---------HHHHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKADMVDDEELLEL---------VEIEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~--e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~---------i~~~i~~~l~~~~ 71 (502)
+..+|++++|+|+++...-+.. ..+..+... ++|.++| .||+|+.+.....+. ..++...+.+..+
T Consensus 99 ~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv-~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 3th5_A 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV-GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
Confidence 5679999999999876443332 333444443 6775555 999999764211111 0112222332222
Q ss_pred CCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 72 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 72 ~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+ .+++++||++|. ++.++++.|.+
T Consensus 178 ~----~~~~~vSA~~g~----------gi~~l~~~l~~ 201 (204)
T 3th5_A 178 A----VKYLECSALTQR----------GLKTVFDEAIR 201 (204)
Confidence 1 378999999987 77788877654
No 158
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.48 E-value=4.1e-05 Score=73.08 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=55.9
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccc
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKL 86 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~ 86 (502)
.+|++++|+|++.. .........+...++|.+++ +||+|+.+... .. .+...+.+.++ +|++++||++
T Consensus 80 ~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv-~NK~Dl~~~~~-~~---~~~~~l~~~lg-----~~vi~~SA~~ 147 (272)
T 3b1v_A 80 RADSILNVVDATNL--ERNLYLTTQLIETGIPVTIA-LNMIDVLDGQG-KK---INVDKLSYHLG-----VPVVATSALK 147 (272)
T ss_dssp CCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEE-EECHHHHHHTT-CC---CCHHHHHHHHT-----SCEEECBTTT
T ss_pred CCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEE-EEChhhCCcCC-cH---HHHHHHHHHcC-----CCEEEEEccC
Confidence 69999999999762 22333445556689996555 99999854211 00 11222333333 5799999999
Q ss_pred cccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 87 ALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 87 g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
|. ++.+|++.+.+.+.
T Consensus 148 g~----------gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 148 QT----------GVDQVVKKAAHTTT 163 (272)
T ss_dssp TB----------SHHHHHHHHHHSCT
T ss_pred CC----------CHHHHHHHHHHHHh
Confidence 87 89999999987553
No 159
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.48 E-value=0.00053 Score=66.56 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=51.5
Q ss_pred ccCCEEEEEEECCCCCCcchHHH-HHHHHHh-----CCCeEEEEEEcCCCCChHH---HHHHHHHHHHHHHhhcCCCCCC
Q psy15224 6 AQMDGAILVCSAADGPMPQTREH-ILLARQV-----GVPYIVVFLNKADMVDDEE---LLELVEIEIRELLNKYEFPGND 76 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~-l~~~~~~-----~i~~iiv~iNK~D~~~~~~---~~~~i~~~i~~~l~~~~~~~~~ 76 (502)
..+|++++|+|++.....+..+. ...+..+ ++|.++ ++||+|+.+.+. .++...+++.++.+.++++ .
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piil-v~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~--~ 155 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFV-LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP--N 155 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEE-EEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCC--S
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEE-EEecccccchhhhhHHHHHHHHHHHHHHHHcCCC--C
Confidence 57999999999987654333322 2222222 777554 599999988422 2224446677788777753 4
Q ss_pred CeEEEccccc
Q psy15224 77 IPIIKGSAKL 86 (502)
Q Consensus 77 ~~ii~iSa~~ 86 (502)
.+++++||++
T Consensus 156 ~~~~~tSa~~ 165 (307)
T 3r7w_A 156 LIGFPTSIWD 165 (307)
T ss_dssp CEEEECCTTS
T ss_pred eEEEEeeecC
Confidence 7899999987
No 160
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.48 E-value=7.9e-05 Score=70.61 Aligned_cols=80 Identities=16% Similarity=0.066 Sum_probs=54.9
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
.++.+|+++.|+||.........+ +.++ ++|.+++ +||+|+++. +.. ++..++++..++ ++ ++|
T Consensus 18 ~l~~~D~vl~VvDar~P~~~~~~~-l~ll---~k~~iiv-lNK~DL~~~-~~~----~~~~~~~~~~g~-----~v-~iS 81 (262)
T 3cnl_A 18 LLRLVNTVVEVRDARAPFATSAYG-VDFS---RKETIIL-LNKVDIADE-KTT----KKWVEFFKKQGK-----RV-ITT 81 (262)
T ss_dssp HHTTCSEEEEEEETTSTTTTSCTT-SCCT---TSEEEEE-EECGGGSCH-HHH----HHHHHHHHHTTC-----CE-EEC
T ss_pred HHhhCCEEEEEeeCCCCCcCcChH-HHhc---CCCcEEE-EECccCCCH-HHH----HHHHHHHHHcCC-----eE-EEE
Confidence 467899999999999876654322 1122 7776665 999999985 222 233445554443 56 899
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
|.+|. ++.+|++.+..
T Consensus 82 a~~~~----------gi~~L~~~l~~ 97 (262)
T 3cnl_A 82 HKGEP----------RKVLLKKLSFD 97 (262)
T ss_dssp CTTSC----------HHHHHHHHCCC
T ss_pred CCCCc----------CHHHHHHHHHH
Confidence 99887 88888887754
No 161
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.47 E-value=9.8e-05 Score=66.89 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=54.8
Q ss_pred ccccCCEEEEEEECCCCCCcch-HHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 4 GAAQMDGAILVCSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt-~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.+..+|++++|+|+.....-+. ...+..+.. .++|. ++++||+|+.+...... ++...+.+..+ .++
T Consensus 77 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~-----~~~ 147 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK-LLVGNKCDLKDKRVVEY---DVAKEFADANK-----MPF 147 (206)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEE-EEEEECTTCTTTCCSCH---HHHHHHHHHTT-----CCE
T ss_pred hccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCCCccccccCH---HHHHHHHHHcC-----CeE
Confidence 4567999999999987433222 223333433 24564 55599999976311101 12333444433 479
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.|.+.+
T Consensus 148 ~~~Sa~~g~----------gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 148 LETSALDST----------NVEDAFLTMARQI 169 (206)
T ss_dssp EECCTTTCT----------THHHHHHHHHHHH
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHH
Confidence 999999987 7888887776543
No 162
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.46 E-value=0.00016 Score=72.12 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=58.7
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcccc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 85 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~ 85 (502)
..+|++++|+|+.+.......+....+ .+.|.++| +||+|+.+.+...+.+.+.+..+++..++. ..+++++||+
T Consensus 70 ~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV-~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~--~~~v~~iSA~ 144 (369)
T 3ec1_A 70 ESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLV-GNKADLLPRSVKYPKLLRWMRRMAEELGLC--PVDVCLVSAA 144 (369)
T ss_dssp HHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEE-EECGGGSCTTCCHHHHHHHHHHHHHTTTCC--CSEEEECBTT
T ss_pred ccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEE-EEChhcCCCccCHHHHHHHHHHHHHHcCCC--cccEEEEECC
Confidence 457899999999874432222221221 26675554 999999875211233344455566766663 2468999999
Q ss_pred ccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 86 LALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 86 ~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+|. ++.+|++.+.+..
T Consensus 145 ~g~----------gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 145 KGI----------GMAKVMEAINRYR 160 (369)
T ss_dssp TTB----------THHHHHHHHHHHH
T ss_pred CCC----------CHHHHHHHHHhhc
Confidence 987 8899999887643
No 163
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.46 E-value=0.00033 Score=62.34 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=55.0
Q ss_pred ccCCEEEEEEECCCCCCcch-HHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 6 AQMDGAILVCSAADGPMPQT-REHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt-~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
..+|++++|+|+++...-+. ...+..+.. .++|.+++ .||+|+.+...+ ....+++..+.+.++. .+++
T Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv-~nK~Dl~~~~~~-~v~~~~~~~~~~~~~~----~~~~ 157 (184)
T 3ihw_A 84 AWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLV-GTQDAISAANPR-VIDDSRARKLSTDLKR----CTYY 157 (184)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEE-EECTTCBTTBCC-CSCHHHHHHHHHHTTT----CEEE
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEE-EECccccccccc-ccCHHHHHHHHHHcCC----CeEE
Confidence 45899999999987433222 233333333 35675554 999999531000 0001234455555442 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
.+||++|. ++.++++.+.+.
T Consensus 158 e~Sa~~~~----------gv~~lf~~l~~~ 177 (184)
T 3ihw_A 158 ETCATYGL----------NVERVFQDVAQK 177 (184)
T ss_dssp EEBTTTTB----------THHHHHHHHHHH
T ss_pred EecCCCCC----------CHHHHHHHHHHH
Confidence 99999987 888888887653
No 164
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.46 E-value=0.00013 Score=71.97 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=56.5
Q ss_pred cccCCEEEEEEECCCC--CC--cchHHHHHHHHH-----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q psy15224 5 AAQMDGAILVCSAADG--PM--PQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 75 (502)
Q Consensus 5 ~~~~D~ailvVda~~g--~~--~qt~e~l~~~~~-----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 75 (502)
+..+|++|+|+|++.. .. .+....+..+.. .++|.++| +||+|+.+.++ .+..+.+.+..
T Consensus 234 i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV-~NK~Dl~~~~e-------~~~~l~~~l~~--- 302 (342)
T 1lnz_A 234 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIV-ANKMDMPEAAE-------NLEAFKEKLTD--- 302 (342)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBE-EECTTSTTHHH-------HHHHHHHHCCS---
T ss_pred HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEE-EECccCCCCHH-------HHHHHHHHhhc---
Confidence 3459999999999752 12 222334444554 36776655 99999987522 22223333331
Q ss_pred CCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 76 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 76 ~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
..+++++||+++. ++.+|++.|.+.+.
T Consensus 303 ~~~v~~iSA~tg~----------gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 303 DYPVFPISAVTRE----------GLRELLFEVANQLE 329 (342)
T ss_dssp CCCBCCCSSCCSS----------TTHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCc----------CHHHHHHHHHHHHh
Confidence 1578999999987 88899988877664
No 165
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.45 E-value=0.00012 Score=66.29 Aligned_cols=89 Identities=18% Similarity=0.100 Sum_probs=54.8
Q ss_pred ccccCCEEEEEEECCCCCCcc-hHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 4 GAAQMDGAILVCSAADGPMPQ-TREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~q-t~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.+..+|++++|+|++....-+ ..+.+..+... ++| ++++.||+|+.+..+... ++...+.+..+ .++
T Consensus 95 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v~~---~~~~~~~~~~~-----~~~ 165 (201)
T 2ew1_A 95 YYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKIDLAERREVSQ---QRAEEFSEAQD-----MYY 165 (201)
T ss_dssp GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCSSCH---HHHHHHHHHHT-----CCE
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccCH---HHHHHHHHHcC-----CEE
Confidence 467899999999998643211 23334444432 455 455599999975311101 12233333333 479
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.|.+.+
T Consensus 166 ~~~Sa~~g~----------gv~~l~~~l~~~i 187 (201)
T 2ew1_A 166 LETSAKESD----------NVEKLFLDLACRL 187 (201)
T ss_dssp EECCTTTCT----------THHHHHHHHHHHH
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHH
Confidence 999999987 8888888776544
No 166
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.45 E-value=0.00024 Score=63.01 Aligned_cols=91 Identities=10% Similarity=0.020 Sum_probs=55.0
Q ss_pred ccccCCEEEEEEECCCCCCcch--HHHHHHHHH--hCCCeEEEEEEcCCCCChHHHHHHH---------HHHHHHHHhhc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EIEIRELLNKY 70 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt--~e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~i---------~~~i~~~l~~~ 70 (502)
.+..+|++++|+|++....-+. ...+..+.. .++| ++++.||+|+.+......++ .++...+.+.+
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 153 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 153 (184)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHc
Confidence 3568999999999986322111 122233333 2566 45559999997531111111 12344455554
Q ss_pred CCCCCCCeEEEcccc-ccccCCCCCCCcccHHHHHHHHhh
Q psy15224 71 EFPGNDIPIIKGSAK-LALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 71 ~~~~~~~~ii~iSa~-~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+. .+++++||+ +|. ++.++++.+.+
T Consensus 154 ~~----~~~~e~Sa~~~~~----------gi~~l~~~i~~ 179 (184)
T 1m7b_A 154 GA----ATYIECSALQSEN----------SVRDIFHVATL 179 (184)
T ss_dssp TC----SEEEECBTTTBHH----------HHHHHHHHHHH
T ss_pred CC----cEEEEeeecCCCc----------CHHHHHHHHHH
Confidence 42 589999998 576 88888888765
No 167
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.44 E-value=4.3e-05 Score=68.96 Aligned_cols=91 Identities=21% Similarity=0.144 Sum_probs=54.8
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHH---hCCCeEEEEEEcCCCCChHH--HHHH-HHHHHHHHHhhcCCCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKADMVDDEE--LLEL-VEIEIRELLNKYEFPGNDI 77 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~--~~~~-i~~~i~~~l~~~~~~~~~~ 77 (502)
+..+|++++|+|++.+...+. .+.+..+.. .++|.++ ++||+|+.+... .... ..++...+.+..+ .
T Consensus 98 ~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piil-v~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-----~ 171 (199)
T 2p5s_A 98 FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIML-VGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-----A 171 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEE-EEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-----C
T ss_pred HhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEE-EEECcccccccccccccccCHHHHHHHHHHcC-----C
Confidence 456899999999987543222 233344443 3677555 499999963200 0000 0122333444433 4
Q ss_pred eEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 78 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 78 ~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++++||++|. ++.++++.|.+.+
T Consensus 172 ~~~~~SA~~g~----------gv~el~~~l~~~i 195 (199)
T 2p5s_A 172 LFCETSAKDGS----------NIVEAVLHLAREV 195 (199)
T ss_dssp EEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred eEEEeeCCCCC----------CHHHHHHHHHHHH
Confidence 79999999987 8889988887644
No 168
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.44 E-value=6.1e-05 Score=68.91 Aligned_cols=88 Identities=25% Similarity=0.251 Sum_probs=53.4
Q ss_pred cccCCEEEEEEECCCCCCcchH-HHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMPQTR-EHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~-e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++|+|+|++....-+.. +.+..+.. .++| +++++||+|+.+..... .+++..+.+..+ +++
T Consensus 105 ~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~v~---~~~~~~~~~~~~-----~~~ 175 (217)
T 2f7s_A 105 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD-IVLIGNKADLPDQREVN---ERQARELADKYG-----IPY 175 (217)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHTT-----CCE
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCC-EEEEEECCccccccccC---HHHHHHHHHHCC-----CcE
Confidence 4679999999999864322211 12221211 3556 45559999997531110 123444555444 469
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.|.+.+
T Consensus 176 ~~~Sa~~g~----------gi~~l~~~l~~~i 197 (217)
T 2f7s_A 176 FETSAATGQ----------NVEKAVETLLDLI 197 (217)
T ss_dssp EEEBTTTTB----------THHHHHHHHHHHH
T ss_pred EEEECCCCC----------CHHHHHHHHHHHH
Confidence 999999987 7888887776543
No 169
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.42 E-value=0.0003 Score=72.14 Aligned_cols=85 Identities=26% Similarity=0.264 Sum_probs=60.5
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
.+..+|++++|+|+..+...++.+.+..+. ..|. ++++||+|+.+.... . .++.+. ...+++++|
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~pi-ivV~NK~Dl~~~~~~--------~-~~~~~~---~~~~~i~iS 364 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPL-ILVMNKIDLVEKQLI--------T-SLEYPE---NITQIVHTA 364 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCE-EEEEECTTSSCGGGS--------T-TCCCCT---TCCCEEEEB
T ss_pred hhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcE-EEEEECCCCCcchhh--------H-HHHHhc---cCCcEEEEE
Confidence 467899999999999988887776666554 3564 455999999875210 0 111111 246799999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
|++|. ++.+|++.|.+.+..
T Consensus 365 Aktg~----------Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 365 AAQKQ----------GIDSLETAILEIVQT 384 (462)
T ss_dssp TTTTB----------SHHHHHHHHHHHHTT
T ss_pred CCCCC----------CHHHHHHHHHHHHhc
Confidence 99987 889999988776543
No 170
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.41 E-value=0.00015 Score=62.68 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=53.9
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|+.+... ....+.+..+.. .++|.++ ++||+|+.+..+. ..+++..+++..+ .++
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil-v~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~ 143 (168)
T 1u8z_A 73 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL-VGNKSDLEDKRQV---SVEEAKNRADQWN-----VNY 143 (168)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEE-EEECGGGGGGCCS---CHHHHHHHHHHHT-----CEE
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE-EEECccccccCcc---CHHHHHHHHHHcC-----CeE
Confidence 356899999999986322 111222222322 2677555 4999999753110 0123344444433 479
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++||++|. ++.++++.+.+.
T Consensus 144 ~~~Sa~~~~----------gi~~l~~~l~~~ 164 (168)
T 1u8z_A 144 VETSAKTRA----------NVDKVFFDLMRE 164 (168)
T ss_dssp EECCTTTCT----------THHHHHHHHHHH
T ss_pred EEeCCCCCC----------CHHHHHHHHHHH
Confidence 999999987 889998887653
No 171
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.38 E-value=0.00014 Score=65.12 Aligned_cols=87 Identities=14% Similarity=0.054 Sum_probs=54.3
Q ss_pred cccCCEEEEEEECCCCCCc-chHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMP-QTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~-qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|+...... .....+..+... ++|. ++++||+|+.+.... ..++...+.+..+ ++++
T Consensus 95 ~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~pi-ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~ 165 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV-MLVGNKSDLSQAREV---PTEEARMFAENNG-----LLFL 165 (193)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEE-EEEEECGGGGGGCCS---CHHHHHHHHHHTT-----CEEE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeE-EEEEECCCccccccc---CHHHHHHHHHHcC-----CEEE
Confidence 4679999999999874321 123334444332 5564 555999999753110 0123344444433 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++||++|. ++.++++.|.+.
T Consensus 166 ~~Sa~~~~----------gi~~l~~~l~~~ 185 (193)
T 2oil_A 166 ETSALDST----------NVELAFETVLKE 185 (193)
T ss_dssp EECTTTCT----------THHHHHHHHHHH
T ss_pred EEeCCCCC----------CHHHHHHHHHHH
Confidence 99999987 888888887653
No 172
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.37 E-value=0.00012 Score=64.80 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=54.8
Q ss_pred ccccCCEEEEEEECCCCCCcch-HHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 4 GAAQMDGAILVCSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt-~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.+..+|++++|+|++.....+. ...+..+.. .++| +++++||+|+.+.... ...+...+.+..+ .++
T Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~ 149 (186)
T 2bme_A 79 YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDLDADREV---TFLEASRFAQENE-----LMF 149 (186)
T ss_dssp TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHHTT-----CEE
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcC-----CEE
Confidence 4568999999999987433222 223333332 4566 4555999999653110 0113334444433 589
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.+.+.+
T Consensus 150 ~~~Sa~~~~----------gi~~l~~~l~~~~ 171 (186)
T 2bme_A 150 LETSALTGE----------NVEEAFVQCARKI 171 (186)
T ss_dssp EECCTTTCT----------THHHHHHHHHHHH
T ss_pred EEecCCCCC----------CHHHHHHHHHHHH
Confidence 999999987 8888888776543
No 173
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.37 E-value=0.00033 Score=63.64 Aligned_cols=90 Identities=10% Similarity=0.019 Sum_probs=54.4
Q ss_pred cccCCEEEEEEECCCCCCcch--HHHHHHHHH--hCCCeEEEEEEcCCCCChHHHHHHH---------HHHHHHHHhhcC
Q psy15224 5 AAQMDGAILVCSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EIEIRELLNKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt--~e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~i---------~~~i~~~l~~~~ 71 (502)
+..+|++++|+|++....-+. ...+..+.. .++| ++++.||+|+.+......++ .++...+.+.++
T Consensus 97 ~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (205)
T 1gwn_A 97 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 175 (205)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC
Confidence 567999999999986322111 122233433 2566 45559999997531111110 123445555544
Q ss_pred CCCCCCeEEEcccc-ccccCCCCCCCcccHHHHHHHHhh
Q psy15224 72 FPGNDIPIIKGSAK-LALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 72 ~~~~~~~ii~iSa~-~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
. .+++++||+ +|. ++.++++.+.+
T Consensus 176 ~----~~~~e~SAk~~~~----------gv~~lf~~l~~ 200 (205)
T 1gwn_A 176 A----ATYIECSALQSEN----------SVRDIFHVATL 200 (205)
T ss_dssp C----SEEEECCTTTCHH----------HHHHHHHHHHH
T ss_pred C----CEEEEeeeccCCc----------CHHHHHHHHHH
Confidence 2 579999998 566 78888887765
No 174
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.37 E-value=0.00011 Score=64.63 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=53.0
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHH-H---HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLA-R---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~-~---~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|++.... ......+..+ . ..++|.++| +||+|+.+...... ++...+.... ..++
T Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv-~nK~Dl~~~~~v~~---~~~~~~~~~~-----~~~~ 148 (181)
T 2fn4_A 78 MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLV-GNKADLESQRQVPR---SEASAFGASH-----HVAY 148 (181)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEE-EECGGGGGGCCSCH---HHHHHHHHHT-----TCEE
T ss_pred HhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEE-EECcccccccccCH---HHHHHHHHHc-----CCeE
Confidence 346899999999986321 1112222222 2 246775555 99999976311101 1223333333 2579
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.|.+.+
T Consensus 149 ~~~Sa~~~~----------gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 149 FEASAKLRL----------NVDEAFEQLVRAV 170 (181)
T ss_dssp EECBTTTTB----------SHHHHHHHHHHHH
T ss_pred EEecCCCCC----------CHHHHHHHHHHHH
Confidence 999999987 8888888876544
No 175
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.36 E-value=0.00017 Score=71.92 Aligned_cols=87 Identities=16% Similarity=0.075 Sum_probs=55.8
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHH--hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
.+|++++|+|+.+-. ......+.. .+.|.++| +||+|+.+.+...+.+.+.+..+++..++. ..+++.+||
T Consensus 69 ~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p~ilV-~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~--~~~v~~iSA 141 (368)
T 3h2y_A 69 SDALVVKIVDIFDFN----GSWLPGLHRFVGNNKVLLV-GNKADLIPKSVKHDKVKHWMRYSAKQLGLK--PEDVFLISA 141 (368)
T ss_dssp SCCEEEEEEETTSHH----HHCCTTHHHHSSSSCEEEE-EECGGGSCTTSCHHHHHHHHHHHHHHTTCC--CSEEEECCT
T ss_pred cCcEEEEEEECCCCc----ccHHHHHHHHhCCCcEEEE-EEChhcCCcccCHHHHHHHHHHHHHHcCCC--cccEEEEeC
Confidence 567999999998621 111111111 26675555 999999764221233334445556666663 247899999
Q ss_pred cccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 85 KLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 85 ~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++|. ++.+|++.+.+.
T Consensus 142 ~~g~----------gi~~L~~~l~~~ 157 (368)
T 3h2y_A 142 AKGQ----------GIAELADAIEYY 157 (368)
T ss_dssp TTCT----------THHHHHHHHHHH
T ss_pred CCCc----------CHHHHHhhhhhh
Confidence 9987 899999998764
No 176
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.36 E-value=0.00046 Score=60.58 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=51.3
Q ss_pred ccCCEEEEEEECCCCCCcchHH-HHHHHHH------hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCe
Q psy15224 6 AQMDGAILVCSAADGPMPQTRE-HILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 78 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e-~l~~~~~------~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 78 (502)
..+|++++|+|++....-+... ++..+.. .++|. +++.||+|+.+...+ ....+++..+.+..+ ..+
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~-~v~~~~~~~~~~~~~----~~~ 144 (178)
T 2iwr_A 71 GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL-ALVGTQDRISASSPR-VVGDARARALXADMK----RCS 144 (178)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEE-EEEEECTTCBTTBCC-CSCHHHHHHHHHHHS----SEE
T ss_pred HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccccccccC-cCCHHHHHHHHHhhc----CCe
Confidence 4689999999998643222211 1112332 25664 555999999421000 000122333444332 258
Q ss_pred EEEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 79 IIKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 79 ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
++.+||++|. ++.++++.+.+.
T Consensus 145 ~~~~Sa~~~~----------~i~~lf~~l~~~ 166 (178)
T 2iwr_A 145 YYETXATYGL----------NVDRVFQEVAQK 166 (178)
T ss_dssp EEEEBTTTTB----------THHHHHHHHHHH
T ss_pred EEEEeccccC----------CHHHHHHHHHHH
Confidence 9999999987 888888877653
No 177
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.35 E-value=0.00018 Score=63.55 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=54.6
Q ss_pred cccCCEEEEEEECCCCCCc-chHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMP-QTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~-qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|+.+...- .....+..+.. .++|.++ ++||+|+.+.... ..+++..+++..+ .++
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil-v~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~ 157 (187)
T 2a9k_A 87 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL-VGNKSDLEDKRQV---SVEEAKNRAEQWN-----VNY 157 (187)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEE-EEECGGGGGGCCS---CHHHHHHHHHHTT-----CEE
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEE-EEECccccccCcc---CHHHHHHHHHHcC-----CeE
Confidence 4568999999999863221 11222222222 2677555 4999999753110 0123444555443 479
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.|.+.+
T Consensus 158 ~~~Sa~~~~----------gi~~l~~~l~~~i 179 (187)
T 2a9k_A 158 VETSAKTRA----------NVDKVFFDLMREI 179 (187)
T ss_dssp EECCTTTCT----------THHHHHHHHHHHH
T ss_pred EEeCCCCCC----------CHHHHHHHHHHHH
Confidence 999999987 8888888876543
No 178
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.35 E-value=0.00015 Score=78.52 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=61.6
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHH-HHHHhCCCeEEEEEEcCCCCChH-------HHHHHHHHHHH----HHHhhc--
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHIL-LARQVGVPYIVVFLNKADMVDDE-------ELLELVEIEIR----ELLNKY-- 70 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~-~~~~~~i~~iiv~iNK~D~~~~~-------~~~~~i~~~i~----~~l~~~-- 70 (502)
+..||++|+|+|++.+.+..+.+.+. .+...+.|. ++|+||+|+.+.. +.++...+.+. ..+..+
T Consensus 198 i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~i-iiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~ 276 (695)
T 2j69_A 198 VNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTV-FFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCT 276 (695)
T ss_dssp HHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCE-EEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGB
T ss_pred HHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCE-EEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45699999999999988877776664 455567885 4559999986531 12222222232 223221
Q ss_pred --CCCCCCCeEEEcccccccc----CCCCCCCcccHHHHHHHHhhcC
Q psy15224 71 --EFPGNDIPIIKGSAKLALE----GDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 71 --~~~~~~~~ii~iSa~~g~~----~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++.....+++++||+.+.. ....-+.+.++.+|.+.|.+.+
T Consensus 277 ~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 277 VEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp SSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred ccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 1111234799999992111 0111112347888888776644
No 179
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.33 E-value=0.00095 Score=65.81 Aligned_cols=74 Identities=24% Similarity=0.337 Sum_probs=48.3
Q ss_pred cccCCEEEEEEECCCCCCcch---HHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT---REHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt---~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
++++|.+++| ||.. +.... .++|..+...+++.+|| +||+|+++.+. .+. .+++...+..+|+ ++++
T Consensus 128 ~anvD~v~iv-~a~~-P~~~~~~i~r~L~~a~~~~~~~iiv-lNK~DL~~~~~-~~~-~~~~~~~y~~~G~-----~v~~ 197 (358)
T 2rcn_A 128 AANIDQIVIV-SAIL-PELSLNIIDRYLVGCETLQVEPLIV-LNKIDLLDDEG-MDF-VNEQMDIYRNIGY-----RVLM 197 (358)
T ss_dssp EECCCEEEEE-EEST-TTCCHHHHHHHHHHHHHHTCEEEEE-EECGGGCCHHH-HHH-HHHHHHHHHTTTC-----CEEE
T ss_pred HhcCCEEEEE-EeCC-CCCCHHHHHHHHHHHHhcCCCEEEE-EECccCCCchh-HHH-HHHHHHHHHhCCC-----cEEE
Confidence 6889999976 4544 33222 23455566789997666 99999998622 111 2234445555665 5899
Q ss_pred ccccccc
Q psy15224 82 GSAKLAL 88 (502)
Q Consensus 82 iSa~~g~ 88 (502)
+||.+|.
T Consensus 198 ~Sa~~~~ 204 (358)
T 2rcn_A 198 VSSHTQD 204 (358)
T ss_dssp CBTTTTB
T ss_pred EecCCCc
Confidence 9999886
No 180
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.00017 Score=66.28 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=54.9
Q ss_pred ccccCCEEEEEEECCCCCCcch-HHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 4 GAAQMDGAILVCSAADGPMPQT-REHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt-~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.+..+|++|+|+|++....-+. .+.+..+... ++|. ++++||+|+.+..... .++...+.+..+ .++
T Consensus 82 ~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~pi-ilv~nK~Dl~~~~~v~---~~~~~~~~~~~~-----~~~ 152 (223)
T 3cpj_B 82 YYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAV-GLIGNKSDLAHLRAVP---TEESKTFAQENQ-----LLF 152 (223)
T ss_dssp GTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEE-EEEECCGGGGGGCCSC---HHHHHHHHHHTT-----CEE
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEECcccccccccC---HHHHHHHHHHcC-----CEE
Confidence 4567999999999987543222 2334444443 5664 4559999997531100 112334444433 579
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+++||++|. ++.++++.|.+.+.
T Consensus 153 ~~~Sa~~~~----------gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 153 TETSALNSE----------NVDKAFEELINTIY 175 (223)
T ss_dssp EECCCC-CC----------CHHHHHHHHHHHHT
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 999999987 88999988876654
No 181
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.31 E-value=6.8e-05 Score=80.96 Aligned_cols=78 Identities=15% Similarity=0.056 Sum_probs=53.1
Q ss_pred ccCCEEEEEEECCCCCCcchH-HHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 6 AQMDGAILVCSAADGPMPQTR-EHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~-e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
..+|++++|+||+.++..++. +.+..+...+.|.++| +||+|+++...... .+.. -+.+.+.....+++++||
T Consensus 186 ~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlV-lNKiDlv~~~~~~~----~il~-~~~~~l~lg~~~VV~iSA 259 (772)
T 3zvr_A 186 KENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGV-ITKLDLMDEGTDAR----DVLE-NKLLPLRRGYIGVVNRSQ 259 (772)
T ss_dssp STTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEE-EECTTSSCTTCCSH----HHHT-TCSSCCSSCEEECCCCCC
T ss_pred cCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEE-EeCcccCCcchhhH----HHHH-HHhhhhhccCCceEEecc
Confidence 468999999999999988887 6777777888886665 99999987522111 1111 001111112357899999
Q ss_pred ccccc
Q psy15224 85 KLALE 89 (502)
Q Consensus 85 ~~g~~ 89 (502)
++|.+
T Consensus 260 ~~G~G 264 (772)
T 3zvr_A 260 KDIDG 264 (772)
T ss_dssp EESSS
T ss_pred ccccc
Confidence 99874
No 182
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.30 E-value=0.00022 Score=64.38 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=54.3
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
+..+|++++|+|++....-+. ...+..+.. .++|. ++++||+|+.+.... . ..+...+.+..+ .+++
T Consensus 95 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~v-~--~~~~~~~~~~~~-----~~~~ 165 (200)
T 2o52_A 95 YRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVV-ILCGNKKDLDPEREV-T--FLEASRFAQENE-----LMFL 165 (200)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEE-EEEEECGGGGGGCCS-C--HHHHHHHHHHTT-----CEEE
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECCCccccccc-C--HHHHHHHHHHcC-----CEEE
Confidence 567999999999987433222 223333333 36664 555999999653110 0 012334444433 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
++||++|. ++.++++.|.+.+
T Consensus 166 ~~SA~~g~----------gi~~l~~~l~~~i 186 (200)
T 2o52_A 166 ETSALTGE----------NVEEAFLKCARTI 186 (200)
T ss_dssp EECTTTCT----------THHHHHHHHHHHH
T ss_pred EEeCCCCC----------CHHHHHHHHHHHH
Confidence 99999987 8888888776543
No 183
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.29 E-value=0.00028 Score=70.13 Aligned_cols=96 Identities=20% Similarity=0.161 Sum_probs=58.5
Q ss_pred ccccCCEEEEEEECCCCC---CcchHHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15224 4 GAAQMDGAILVCSAADGP---MPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 77 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~---~~qt~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 77 (502)
.+..||++++|+|+.+.. ..+.......+..+ ++|.+ +|.||+|+.+.. .......+..+...+.. ...
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~i-lV~NK~Dl~~~~--~~~~~~~~~~l~~~l~~--~~~ 328 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPIL-VTLNKIDKINGD--LYKKLDLVEKLSKELYS--PIF 328 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEE-EEEECGGGCCSC--HHHHHHHHHHHHHHHCS--CEE
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEE-EEEECCCCCCch--HHHHHHHHHHHHHHhcC--CCC
Confidence 357899999999997653 12222223444443 56754 459999998641 11111223233333311 134
Q ss_pred eEEEccccccccCCCCCCCcccHHHHHHHHhhcCCCC
Q psy15224 78 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 114 (502)
Q Consensus 78 ~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~~ 114 (502)
+++++||++|. ++.+|++.|.+.++.+
T Consensus 329 ~~~~~SA~~g~----------gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 329 DVIPISALKRT----------NLELLRDKIYQLATQL 355 (364)
T ss_dssp EEEECBTTTTB----------SHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCc----------CHHHHHHHHHHHhccc
Confidence 68999999987 8899999887766543
No 184
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.28 E-value=0.00024 Score=65.12 Aligned_cols=83 Identities=13% Similarity=0.086 Sum_probs=54.6
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChH-HHHHHHHHHHHHHHhhcCCCCCCCeEEEcccc
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE-ELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 85 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~-~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~ 85 (502)
.++.+++|+|+..+...+ ...+...+.|.+++ +||+|+.+.. ...++ +...++.++ ...+++++||+
T Consensus 129 ~~~~~i~vvd~~~~~~~~----~~~~~~~~~~~iiv-~NK~Dl~~~~~~~~~~----~~~~~~~~~---~~~~i~~~Sa~ 196 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDDVV----EKHPEIFRVADLIV-INKVALAEAVGADVEK----MKADAKLIN---PRAKIIEMDLK 196 (221)
T ss_dssp SCSEEEEEEEGGGCTTHH----HHCHHHHHTCSEEE-EECGGGHHHHTCCHHH----HHHHHHHHC---TTSEEEECBTT
T ss_pred ccCcEEEEEeCCCcchhh----hhhhhhhhcCCEEE-EecccCCcchhhHHHH----HHHHHHHhC---CCCeEEEeecC
Confidence 367889999998875322 22234457787766 9999986431 11222 333344332 24689999999
Q ss_pred ccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 86 LALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 86 ~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+|. ++.+|++.|.+.+
T Consensus 197 ~g~----------gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 197 TGK----------GFEEWIDFLRGIL 212 (221)
T ss_dssp TTB----------THHHHHHHHHHHH
T ss_pred CCC----------CHHHHHHHHHHHH
Confidence 987 8999999887654
No 185
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.28 E-value=0.00089 Score=66.42 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=54.7
Q ss_pred cCCEEEEEEECCCCC--Ccch-HHHHHHHHH-h-CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 7 QMDGAILVCSAADGP--MPQT-REHILLARQ-V-GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 7 ~~D~ailvVda~~g~--~~qt-~e~l~~~~~-~-~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
.+|.+++|+|+..+. ..+. .+.+..+.. . +.|.++| .||+|+.+..+ . +++..+++.. ..++++
T Consensus 246 ~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV-~NK~Dl~~~~~-~----~~~~~~~~~~-----~~~~~~ 314 (357)
T 2e87_A 246 LGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVV-INKIDVADEEN-I----KRLEKFVKEK-----GLNPIK 314 (357)
T ss_dssp TCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEE-ECCTTTCCHHH-H----HHHHHHHHHT-----TCCCEE
T ss_pred cCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEE-EECcccCChHH-H----HHHHHHHHhc-----CCCeEE
Confidence 589999999987643 3222 233333333 3 7785555 99999987522 2 2233344432 257899
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+||++|. ++.+|++.+.+.+
T Consensus 315 iSA~~g~----------gi~~l~~~i~~~l 334 (357)
T 2e87_A 315 ISALKGT----------GIDLVKEEIIKTL 334 (357)
T ss_dssp CBTTTTB----------THHHHHHHHHHHH
T ss_pred EeCCCCc----------CHHHHHHHHHHHH
Confidence 9999987 8889888886654
No 186
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.27 E-value=0.00029 Score=70.03 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=53.1
Q ss_pred CCEEEEEEEC-CCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccc
Q psy15224 8 MDGAILVCSA-ADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKL 86 (502)
Q Consensus 8 ~D~ailvVda-~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~ 86 (502)
+|+++++|++ ..++...+.+.+..+. .++|.++ |+||+|+.+. .......+++..+++..+ ++++++||++
T Consensus 146 v~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIl-V~NK~Dl~~~-~ev~~~k~~i~~~~~~~~-----i~~~~~Sa~~ 217 (361)
T 2qag_A 146 VHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVP-VIAKADTLTL-KERERLKKRILDEIEEHN-----IKIYHLPDAE 217 (361)
T ss_dssp CCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEE-EEECCSSSCH-HHHHHHHHHHHHHTTCC------CCSCCCC---
T ss_pred eEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEE-EEECCCCCCH-HHHHHHHHHHHHHHHHCC-----CCEEeCCCcC
Confidence 4678888886 5667666666655543 5677555 5999999885 223333345666665433 5788999998
Q ss_pred cccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 87 ALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 87 g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
|.+ + +.+..+++.+.+.+|.
T Consensus 218 ~~~-~------e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 218 SDE-D------EDFKEQTRLLKASIPF 237 (361)
T ss_dssp -------------CHHHHHHHHHTCSC
T ss_pred CCc-c------hhHHHHHHHHHhcCCC
Confidence 874 2 2456677878776664
No 187
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.27 E-value=0.00035 Score=65.84 Aligned_cols=93 Identities=17% Similarity=0.114 Sum_probs=57.3
Q ss_pred ccccCCEEEEEEECCCCCCcchHHH-----HHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHH---HHH----------
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREH-----ILLARQVGVPYIVVFLNKADMVDDEELLELVEIE---IRE---------- 65 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~-----l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~---i~~---------- 65 (502)
.++. +++++++|+..+....+... +......++|.++| +||+|+.+..+ .+++.+. +..
T Consensus 135 ~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv-~NK~D~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~ 211 (262)
T 1yrb_A 135 NLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPA-LNKVDLLSEEE-KERHRKYFEDIDYLTARLKLDPS 211 (262)
T ss_dssp TSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEE-ECCGGGCCHHH-HHHHHHHHHCHHHHHHHHHHCCS
T ss_pred HHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEE-Eeccccccccc-HHHHHHHHhChHHHHHHHhcccc
Confidence 4456 89999999987666544321 12234468886655 99999987521 1111111 111
Q ss_pred -----------HHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 66 -----------LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 66 -----------~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+++.++. ..+++++||++|. ++.+|++.|.+.++
T Consensus 212 ~~~~~~~~l~~~~~~~~~---~~~~~~~SA~~~~----------gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 212 MQGLMAYKMCSMMTEVLP---PVRVLYLSAKTRE----------GFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHHHHHHHSC---CCCCEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHHHhcC---cccceEEEecCcc----------cHHHHHHHHHHHhc
Confidence 1223222 2478999999987 89999998876543
No 188
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.26 E-value=7.2e-05 Score=66.55 Aligned_cols=85 Identities=20% Similarity=0.277 Sum_probs=56.6
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccc
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKL 86 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~ 86 (502)
.+|++++|+|+.. ..+....+..+...++|.+++ .||+|+.+.... . .+...+.+.++ .+++++||++
T Consensus 85 ~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv-~nK~Dl~~~~~~-~---~~~~~~~~~~~-----~~~~~~Sa~~ 152 (188)
T 2wjg_A 85 KPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLA-LNKMDLAKSLGI-E---IDVDKLEKILG-----VKVVPLSAAK 152 (188)
T ss_dssp CCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEE-EECHHHHHHTTC-C---CCHHHHHHHHT-----SCEEECBGGG
T ss_pred CCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEE-EEhhhccccccc-h---HHHHHHHHHhC-----CCeEEEEecC
Confidence 4899999999875 233445555666678886555 999998542110 0 12233333333 4799999999
Q ss_pred cccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 87 ALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 87 g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
|. ++.++++.+.+.++.
T Consensus 153 ~~----------~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 153 KM----------GIEELKKAISIAVKD 169 (188)
T ss_dssp TB----------SHHHHHHHHHHHHTT
T ss_pred CC----------CHHHHHHHHHHHHHh
Confidence 87 899999988776643
No 189
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.26 E-value=0.0012 Score=68.29 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=77.4
Q ss_pred HHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCC-CeeEEEEEEEEcceecce
Q psy15224 101 LSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD-TVKTTCTGVEMFRKLLDQ 179 (502)
Q Consensus 101 ~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~-~~~~~V~~i~~~~~~v~~ 179 (502)
+++.+++...+++ .....---..-|.++|+.+..|.++.++|..|+|+.|..+.+...+. -...++.||+.+++++++
T Consensus 389 ~~~~~~~~~~~~~-~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e 467 (501)
T 1zo1_I 389 DEVKAAMSGMLSP-ELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNE 467 (501)
T ss_dssp HHTHHHHTTTSST-TCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESE
T ss_pred HHHHHHHHhhcCc-eeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccE
Confidence 3444445444433 22222333455778999888899999999999999999999863211 146789999999999999
Q ss_pred eecCCeEEEEecCCCccCcccceEEeC
Q psy15224 180 GQAGDNIGLLLRGTKREDVERGQVLAK 206 (502)
Q Consensus 180 a~aG~~v~l~l~~~~~~~i~~G~vl~~ 206 (502)
+..|+-|++.+.+ ..+++.||+|-.
T Consensus 468 ~~~g~ecgi~~~~--~~~~~~gd~~~~ 492 (501)
T 1zo1_I 468 VRNGMECGIGVKN--YNDVRTGDVIEV 492 (501)
T ss_dssp EETTCCEEEEBCC--CTTCCTTCEEEE
T ss_pred ECCCCEEEEEEcC--cCCCCCCCEEEE
Confidence 9999999999985 458999999853
No 190
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.26 E-value=0.0001 Score=67.60 Aligned_cols=86 Identities=16% Similarity=0.059 Sum_probs=53.1
Q ss_pred cccCCEEEEEEECCCCCCcch-HHHHHHHHHh--CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 5 AAQMDGAILVCSAADGPMPQT-REHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt-~e~l~~~~~~--~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
+..+|++++|+|++....-+. ...+..+... ++|.++| +||+|+.+.... .+...+.+..+ .++++
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv-~nK~Dl~~~~~~-----~~~~~~~~~~~-----~~~~~ 153 (221)
T 3gj0_A 85 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC-GNKVDIKDRKVK-----AKSIVFHRKKN-----LQYYD 153 (221)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEE-EECTTSSSCSSC-----GGGCCHHHHHT-----CEEEE
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEE-EECCcccccccc-----HHHHHHHHHcC-----CEEEE
Confidence 457999999999987543222 2233333332 7775554 999999764110 11122233222 57999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+||++|. ++.++++.|.+.+
T Consensus 154 ~Sa~~~~----------gi~~l~~~l~~~l 173 (221)
T 3gj0_A 154 ISAKSNY----------NFEKPFLWLARKL 173 (221)
T ss_dssp CBGGGTB----------TTTHHHHHHHHHH
T ss_pred EeCCCCC----------CHHHHHHHHHHHH
Confidence 9999987 7777777776544
No 191
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.22 E-value=0.00043 Score=62.37 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=54.3
Q ss_pred cccCCEEEEEEECCCCCCc-chHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPMP-QTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~-qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|++....- .....+..+.. .++|.++ ++||+|+.+.... ..+++..+++..+ .++
T Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil-v~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~ 153 (206)
T 2bov_A 83 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL-VGNKSDLEDKRQV---SVEEAKNRAEQWN-----VNY 153 (206)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEE-EEECTTCGGGCCS---CHHHHHHHHHHHT-----CEE
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE-EEeccCccccccc---cHHHHHHHHHHhC-----CeE
Confidence 3568999999999863221 11222333332 2678555 4999999763110 0123444444443 479
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.|.+.+
T Consensus 154 ~~~Sa~~g~----------gi~~l~~~l~~~i 175 (206)
T 2bov_A 154 VETSAKTRA----------NVDKVFFDLMREI 175 (206)
T ss_dssp EEECTTTCT----------THHHHHHHHHHHH
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHH
Confidence 999999987 8888888776544
No 192
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.18 E-value=0.00045 Score=61.56 Aligned_cols=87 Identities=14% Similarity=0.071 Sum_probs=54.1
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH------hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 77 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~------~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 77 (502)
+..+|++++|+|++.... ....+.+..+.. .++|.++ +.||+|+.+.... ..++...+.+..+ .
T Consensus 89 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piil-v~nK~Dl~~~~~v---~~~~~~~~~~~~~-----~ 159 (187)
T 3c5c_A 89 LNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALL-LGNKLDMAQYRQV---TKAEGVALAGRFG-----C 159 (187)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-EEECGGGGGGCSS---CHHHHHHHHHHHT-----C
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEE-EEECcchhhcCcc---CHHHHHHHHHHcC-----C
Confidence 356899999999985322 112223333333 3778555 4999999653110 0123344455444 4
Q ss_pred eEEEccc-cccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 78 PIIKGSA-KLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 78 ~ii~iSa-~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++.+|| ++|. ++.++++.+.+.
T Consensus 160 ~~~e~Sa~~~g~----------gv~~lf~~l~~~ 183 (187)
T 3c5c_A 160 LFFEVSACLDFE----------HVQHVFHEAVRE 183 (187)
T ss_dssp EEEECCSSSCSH----------HHHHHHHHHHHH
T ss_pred cEEEEeecCccc----------cHHHHHHHHHHH
Confidence 7999999 8887 888888887653
No 193
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.18 E-value=4.1e-05 Score=69.10 Aligned_cols=89 Identities=18% Similarity=0.181 Sum_probs=48.8
Q ss_pred ccccCCEEEEEEECCCCCCcch-HHHHHHHHHh---CCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 4 GAAQMDGAILVCSAADGPMPQT-REHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt-~e~l~~~~~~---~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
.+..+|++++|+|+++...-+. .+.+..+... ++|.++ ++||+|+.+...... .+...+...++ .++
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~il-v~nK~Dl~~~~~v~~---~~~~~~~~~~~-----~~~ 172 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL-VGNKCDLTTKKVVDY---TTAKEFADSLG-----IPF 172 (199)
T ss_dssp --CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEE-C-CCSSCC--CCCCS---CC-CHHHHTTT-----CCB
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEE-EEECccCCccccCCH---HHHHHHHHHcC-----CeE
Confidence 4567999999999987432221 2233333332 566554 599999975311000 12233444333 468
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+++||++|. ++.++++.|.+.+
T Consensus 173 ~~vSA~~g~----------gv~~l~~~l~~~l 194 (199)
T 3l0i_B 173 LETSAKNAT----------NVEQSFMTMAAEI 194 (199)
T ss_dssp CCCCC---H----------HHHHHHHHHTTTT
T ss_pred EEEECCCCC----------CHHHHHHHHHHHH
Confidence 899999987 8999999987755
No 194
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.14 E-value=0.00064 Score=61.07 Aligned_cols=88 Identities=26% Similarity=0.237 Sum_probs=54.5
Q ss_pred ccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 6 AQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
..+|++++|+|++.... ....+.+..+.. .++|.++| .||+|+.+.... ..++...+.+..+ .+++
T Consensus 95 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv-~nK~Dl~~~~~v---~~~~~~~~a~~~~-----~~~~ 165 (195)
T 3cbq_A 95 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV-GNKSDLARSREV---SLEEGRHLAGTLS-----CKHI 165 (195)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEE-EECTTCTTTCCS---CHHHHHHHHHHTT-----CEEE
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEE-eechhccccCCc---CHHHHHHHHHHhC-----CEEE
Confidence 45899999999975321 112233333333 36775554 999999753110 0112334444433 4799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++||++|. ++.++++.+.+.+.
T Consensus 166 e~Sa~~~~----------~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 166 ETSAALHH----------NTRELFEGAVRQIR 187 (195)
T ss_dssp EEBTTTTB----------SHHHHHHHHHHHHH
T ss_pred EEcCCCCC----------CHHHHHHHHHHHHH
Confidence 99999987 88899888876553
No 195
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.11 E-value=0.00018 Score=69.30 Aligned_cols=77 Identities=17% Similarity=0.083 Sum_probs=47.0
Q ss_pred ccCCEEE-EEEECCCCCCcchH-HHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 6 AQMDGAI-LVCSAADGPMPQTR-EHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 6 ~~~D~ai-lvVda~~g~~~qt~-e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
..+|.++ +|+|++.+...++. ..+..+...+.|.++| +||+|+.+.... ..+.+...+. .......+++++|
T Consensus 160 ~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V-~NK~Dl~~~~~~---~~~~~~~~~~--~~~~~~~~v~~~S 233 (299)
T 2aka_B 160 TKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGV-ITKLDLMDEGTD---ARDVLENKLL--PLRRGYIGVVNRS 233 (299)
T ss_dssp TSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEE-EECGGGSCTTCC---CHHHHTTCSS--CCTTCEEECCCCC
T ss_pred cCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEE-EEccccCCCCch---HHHHHhCCcC--cCCCCcEEEECCC
Confidence 3566666 68999988877775 4566666678886555 999999864210 0111111111 1111124788999
Q ss_pred ccccc
Q psy15224 84 AKLAL 88 (502)
Q Consensus 84 a~~g~ 88 (502)
|++|.
T Consensus 234 A~~~~ 238 (299)
T 2aka_B 234 QKDID 238 (299)
T ss_dssp CBCTT
T ss_pred hhhcc
Confidence 99987
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.09 E-value=0.0012 Score=65.18 Aligned_cols=90 Identities=17% Similarity=0.066 Sum_probs=51.5
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCC--CCCCeEEEcc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP--GNDIPIIKGS 83 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~--~~~~~ii~iS 83 (502)
..+|++++|+|+..|...| .+.. ..+..+.+++ +||+|+.+. ........++...++..... ....+++++|
T Consensus 186 ~~~d~vl~V~d~~~~~~~~---~i~~-~il~~~~ivV-lNK~Dl~~~-~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iS 259 (349)
T 2www_A 186 DMVDMFVLLLPPAGGDELQ---GIKR-GIIEMADLVA-VTKSDGDLI-VPARRIQAEYVSALKLLRKRSQVWKPKVIRIS 259 (349)
T ss_dssp TTCSEEEEEECCC----------------CCSCSEEE-ECCCSGGGH-HHHHHHHHHHHHHHTTCC-----CCCEEEECC
T ss_pred hhCCEEEEEEcCCcchhHH---HhHH-HHHhcCCEEE-EeeecCCCc-hhHHHHHHHHHHHHHhcCccccCCCceEEEEe
Confidence 4789999999998764322 2211 2246676665 999999764 22222233444444332110 1135799999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
|++|. ++.+|++.|.+.+
T Consensus 260 A~~g~----------Gi~~L~~~I~~~~ 277 (349)
T 2www_A 260 ARSGE----------GISEMWDKMKDFQ 277 (349)
T ss_dssp TTTCT----------THHHHHHHHHHHH
T ss_pred cCCCC----------CHHHHHHHHHHHH
Confidence 99987 8888888887644
No 197
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.08 E-value=0.0002 Score=69.71 Aligned_cols=96 Identities=16% Similarity=0.090 Sum_probs=57.1
Q ss_pred cccCCEEEEEEEC-CCCCCcchH-HHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 5 AAQMDGAILVCSA-ADGPMPQTR-EHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 5 ~~~~D~ailvVda-~~g~~~qt~-e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
+..+|++++|+|+ +.++..++. +.+..+...+.|.++| +||+|+.+.... +.+.++..... ...+++++
T Consensus 165 ~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v-~NK~Dl~~~~~~-------~~~~~~~~~~~-~~~~~~~v 235 (315)
T 1jwy_B 165 IKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGV-ITKLDLMDKGTD-------AMEVLTGRVIP-LTLGFIGV 235 (315)
T ss_dssp HHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEE-EECTTSSCSSCC-------CHHHHTTSSSC-CTTCEEEC
T ss_pred HcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEE-EcCcccCCcchH-------HHHHHhCCCcc-CCCCeEEE
Confidence 4578999999997 667765554 6667776778886665 999999875220 11122211011 11345666
Q ss_pred cccccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 83 SAKLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 83 Sa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
|+.++.+.+. +.++.++++.+.+++|.
T Consensus 236 ~~~sa~~~~~----~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 236 INRSQEDIIA----KKSIRESLKSEILYFKN 262 (315)
T ss_dssp CCCCHHHHSS----SCCHHHHHHHHHHHHHT
T ss_pred ecCChhhhcc----CCCHHHHHHHHHHHHhC
Confidence 6655443111 12788888887776653
No 198
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.03 E-value=0.0018 Score=46.92 Aligned_cols=48 Identities=17% Similarity=0.450 Sum_probs=37.5
Q ss_pred cCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceE
Q psy15224 449 YQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVE 500 (502)
Q Consensus 449 ~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~ 500 (502)
-.+|..|+|..|||+|+.|.|.+.... .+.|+ +-.+...|+++.+.+.
T Consensus 18 ~liGktV~I~kGpyKG~~GiVkd~t~~--~~RVE--Lhs~~K~VtV~r~~l~ 65 (71)
T 2e70_A 18 ELIGQTVRISQGPYKGYIGVVKDATES--TARVE--LHSTCQTISVDRQRLT 65 (71)
T ss_dssp SSTTSEEEECSSTTTTCEEEEEEECSS--CEEEE--ESSSCCEEEECTTTEE
T ss_pred ccCCCEEEEeccCCCCeEEEEEECCCC--eEEEE--ecCCceEEEEEhhhcc
Confidence 458999999999999999999998853 56665 4445667778877763
No 199
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.01 E-value=0.00066 Score=60.20 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=53.5
Q ss_pred ccCCEEEEEEECCCCCC--cchHHHHHHHHH--hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 6 AQMDGAILVCSAADGPM--PQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~--~qt~e~l~~~~~--~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
+.+|++++|.|.+++.. ......+..+.. .+.| ++++.||+|+.+....-+........+.+..++. ...++++
T Consensus 78 ~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 155 (184)
T 2zej_A 78 TQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTHLDVSDEKQRKACMSKITKELLNKRGFP-AIRDYHF 155 (184)
T ss_dssp HHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCE-EEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSC-EEEEEEE
T ss_pred cCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCc-EEEEEECCCcccchhhHHHHHHHHHHHHHhcCCc-chhheEE
Confidence 45889999999987521 122233333333 2566 4555899999874221111112222333333331 0124899
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+||++|. +++.+|++.+.+.++
T Consensus 156 ~Sa~~~~---------~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 156 VNATEES---------DALAKLRKTIINESL 177 (184)
T ss_dssp CCTTSCC---------HHHHHHHHHHHHHHH
T ss_pred EecccCc---------hhHHHHHHHHHHHHh
Confidence 9999873 267888888876554
No 200
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.00 E-value=0.00043 Score=72.69 Aligned_cols=86 Identities=20% Similarity=0.197 Sum_probs=54.7
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhC--CCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEcc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVG--VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 83 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~--i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iS 83 (502)
..+|++++|+|++.+ ......+..+...+ .|.++| .||+|+.+..+. ..+++...+...+ .+++++|
T Consensus 120 ~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV-~NK~Dl~~~~~v---~~~~~~~~~~~~~-----~~~~~vS 188 (535)
T 3dpu_A 120 TRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVV-MNKIDENPSYNI---EQKKINERFPAIE-----NRFHRIS 188 (535)
T ss_dssp HSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEE-ECCTTTCTTCCC---CHHHHHHHCGGGT-----TCEEECC
T ss_pred cCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEE-EECCCccccccc---CHHHHHHHHHhcC-----CceEEEe
Confidence 469999999999864 45555667777765 886555 999999764111 0123455555443 4699999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
|++|. ++.+|++.+.+.+.
T Consensus 189 A~~g~----------gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 189 CKNGD----------GVESIAKSLKSAVL 207 (535)
T ss_dssp C---------------CTTHHHHHHHHHT
T ss_pred cCccc----------CHHHHHHHHHHHHh
Confidence 99987 67777777766554
No 201
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.98 E-value=0.00071 Score=60.60 Aligned_cols=88 Identities=19% Similarity=0.103 Sum_probs=51.8
Q ss_pred cccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15224 5 AAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 79 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 79 (502)
+..+|++++|+|+++... ....+.+..+.. .++|.++| .||+|+.+..... .++...+.+..+ .++
T Consensus 96 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv-~NK~Dl~~~~~v~---~~~~~~~~~~~~-----~~~ 166 (196)
T 2atv_A 96 MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV-GNKADLDHSRQVS---TEEGEKLATELA-----CAF 166 (196)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEE-EECGGGGGGCCSC---HHHHHHHHHHHT-----SEE
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEE-EECcccccccccC---HHHHHHHHHHhC-----CeE
Confidence 356899999999986321 122233333332 47775555 9999997631100 112333444333 579
Q ss_pred EEccccccccCCCCCCCcccHHHHHHHHhhc
Q psy15224 80 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 80 i~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
+++||++|. .++.++++.|.+.
T Consensus 167 ~~~Sa~~g~---------~gi~~l~~~l~~~ 188 (196)
T 2atv_A 167 YECSACTGE---------GNITEIFYELCRE 188 (196)
T ss_dssp EECCTTTCT---------TCHHHHHHHHHHH
T ss_pred EEECCCcCC---------cCHHHHHHHHHHH
Confidence 999999874 1577777776553
No 202
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.94 E-value=0.0014 Score=59.85 Aligned_cols=87 Identities=22% Similarity=0.237 Sum_probs=50.8
Q ss_pred ccCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 6 AQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
..+|++++|.|.+.--. ....+.+..+.. .++|.++ |.||+|+.+...... ++...+....+ .+++
T Consensus 110 ~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piil-VgNK~DL~~~r~v~~---~e~~~~a~~~~-----~~~~ 180 (211)
T 2g3y_A 110 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL-VGNKSDLVRCREVSV---SEGRACAVVFD-----CKFI 180 (211)
T ss_dssp CCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEE-EEECTTCGGGCCSCH---HHHHHHHHHHT-----CEEE
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEE-EEEChHHhcCceEeH---HHHHHHHHHcC-----CEEE
Confidence 46899999999875211 111122222322 3677554 599999965311000 11222233322 5799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
.+||++|. ++.++++.+.+.+
T Consensus 181 e~SAk~g~----------~v~elf~~l~~~i 201 (211)
T 2g3y_A 181 ETSAAVQH----------NVKELFEGIVRQV 201 (211)
T ss_dssp ECBTTTTB----------SHHHHHHHHHHHH
T ss_pred EEeCCCCC----------CHHHHHHHHHHHH
Confidence 99999987 8889888876543
No 203
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.92 E-value=0.00067 Score=61.87 Aligned_cols=79 Identities=16% Similarity=0.344 Sum_probs=38.7
Q ss_pred ccCCEEEEEEECC-C-CCCcchHHHHH-HHHH------hCCCeEEEEEEcCCCCCh---HHHHHHHHHHHHHHHhhcCCC
Q psy15224 6 AQMDGAILVCSAA-D-GPMPQTREHIL-LARQ------VGVPYIVVFLNKADMVDD---EELLELVEIEIRELLNKYEFP 73 (502)
Q Consensus 6 ~~~D~ailvVda~-~-g~~~qt~e~l~-~~~~------~~i~~iiv~iNK~D~~~~---~~~~~~i~~~i~~~l~~~~~~ 73 (502)
..+|++++|+|+. . .-.....+++. ++.. .++|.++| .||+|+.+. +...+.+.+++..+....+
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv-~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-- 157 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA-CNKSELFTARPPSKIKDALESEIQKVIERRK-- 157 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEE-EECTTSTTCCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEE-EEchHhcccCCHHHHHHHHHHHHHHHHHHHh--
Confidence 3489999999998 2 12233333333 3222 37775555 999999875 2222333334444433322
Q ss_pred CCCCeEEEccccccccC
Q psy15224 74 GNDIPIIKGSAKLALEG 90 (502)
Q Consensus 74 ~~~~~ii~iSa~~g~~~ 90 (502)
.+++.+||++|.+.
T Consensus 158 ---~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 158 ---KSLNEVERKINEED 171 (218)
T ss_dssp ---HHHHC---------
T ss_pred ---cccccccccccccc
Confidence 46788899988754
No 204
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.86 E-value=0.0014 Score=61.41 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=59.9
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHh------CCCeEEEEEEcCCCCCh--HHHHHHH-HHHHHHHHhhcCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQV------GVPYIVVFLNKADMVDD--EELLELV-EIEIRELLNKYEFPGN 75 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~------~i~~iiv~iNK~D~~~~--~~~~~~i-~~~i~~~l~~~~~~~~ 75 (502)
+..+|++|+|+|+.. ++.++.+.+..+... +.|. |++.||+|+.+. ++.+... ...+..+++.++.
T Consensus 103 ~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i-ilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~--- 177 (247)
T 3lxw_A 103 APGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMV-IVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG--- 177 (247)
T ss_dssp TTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEE-EEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT---
T ss_pred CCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEE-EEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC---
Confidence 378999999999974 777777777777664 6664 455999999763 2222110 0346677777654
Q ss_pred CCeEEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 76 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 76 ~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
.++++++...... .+.++.+|++.+.+.++
T Consensus 178 --~~~~~~~~~~~~~-----~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 178 --RVCAFDNRATGRE-----QEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp --CEEECCTTCCHHH-----HHHHHHHHHHHHHHHHH
T ss_pred --eEEEEeCCCCccc-----cHHHHHHHHHHHHHHHH
Confidence 2444544321000 01278889998877664
No 205
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0007 Score=60.35 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=65.5
Q ss_pred HhhccccceEEEeeccCchHHHHHHHHHHHH-------hcCCCcceeEEEEeeEEEEEeecCcEEEEEecccCcEEEEEE
Q psy15224 322 RSINNKKRWYVIHSYSGMEKNVQRKLIERIN-------KLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEM 394 (502)
Q Consensus 322 ~~~~~~~~WYvl~t~~~~E~~v~~~L~~~~~-------~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~ 394 (502)
.+.+.+..-|+++|++|+|+.++..|.++.. +.++ .++.+|.|- =+.|||||+.
T Consensus 96 r~~S~DP~iw~Vkc~~G~Er~va~~l~~K~~~~~~~~~~~~l--~I~Si~~~d-----------------~lkGYIyVEA 156 (200)
T 2exu_A 96 RDGSGSATIWGVRCRPGKEKELIRKLLKKKFNLDRAMGKKKL--KILSIFQRD-----------------NYTGRIYIEA 156 (200)
T ss_dssp TTSCSCCCEEEEEECTTCHHHHHHHHHHHHHHHHHHSCSSCC--CCCEEECCT-----------------TSTTEEEEEC
T ss_pred CCcCCCCCEEEEecCCChHHHHHHHHHHHHHHhhhccCCCCc--cEEEEEecC-----------------CCcEEEEEEE
Confidence 3344567789999999999999988877654 2333 366777762 3899999999
Q ss_pred EeCccceeeeeccCCeeEeccCCCCcceeCCHHHHHHHHHH
Q psy15224 395 EMTDESWHLVKNTKKVTGFIGGKSNRPTPISSKEIEEILKQ 435 (502)
Q Consensus 395 ~~~~~~~~~i~~~~~v~~~l~~~~~~p~~v~~~ei~~~~~~ 435 (502)
+........+..+++++.. +..-||-.||-.+.+.
T Consensus 157 ~~~~~V~~ai~Gi~~vy~~------~~~lVPi~Em~dll~v 191 (200)
T 2exu_A 157 PKQSVIEKFCNGVPDIYIS------QKLLIPVQELPLLLKP 191 (200)
T ss_dssp SCHHHHHHHHTTCTTEEEE------EEEECCGGGHHHHHCS
T ss_pred CCHHHHHHHHhhhhhhhcC------CceEecHHHhHhHhhh
Confidence 9766777777788877442 3468899999877653
No 206
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=96.77 E-value=0.0014 Score=53.14 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=39.3
Q ss_pred eeCCHHHHHHHHHHHhcCCCCCCCccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEE
Q psy15224 422 TPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 482 (502)
Q Consensus 422 ~~v~~~ei~~~~~~~~~~~~~~~~~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~ 482 (502)
+||+.+.-+.. + .-+..+..||.|.|+.|+++|.+|.|.+++..++++.|+
T Consensus 26 a~LskeLr~ky------~----vr~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VE 76 (120)
T 1vq8_T 26 ATLSADLREEY------G----QRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE 76 (120)
T ss_dssp EEECHHHHHHH------T----CSEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred CcCCHHHHHhh------c----cccccccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEe
Confidence 47787655542 1 123468999999999999999999999999888777553
No 207
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.77 E-value=0.0045 Score=64.46 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=81.2
Q ss_pred cHHHHHHHHhhcCCCCCCCCCCCeeEEEeEEEeeCC---CeEEEEEEEEEeeeecCCEEEEeecCCC---eeEEEEEEEE
Q psy15224 99 SILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG---RGTVVTGRVERGIVRVGEELEIIGIKDT---VKTTCTGVEM 172 (502)
Q Consensus 99 ~i~~Ll~~l~~~~p~~~~~~~~p~~~~v~~~~~~~~---~G~v~~g~v~sG~l~~gd~v~i~p~~~~---~~~~V~~i~~ 172 (502)
-++++-+++...+++ .....-.-.+-|.++|.++. .|+++.++|..|+|+.|..+.+.- ++ ...++.|++.
T Consensus 426 l~~~~~~~~~~~l~~-~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r--~~~~i~~g~i~slk~ 502 (537)
T 3izy_P 426 LIEDLQEELSSRLPC-IVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIR--NGHVIWKGSLISLKH 502 (537)
T ss_dssp SHHHHHHHHSSSSSC-SSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEES--SSSEEEEEECCCCCC
T ss_pred HHHHHHHHHHhccCC-ceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEec--CCEEEEEEEEehhcc
Confidence 456677777765544 33334446788899998774 678999999999999999999984 33 3567889999
Q ss_pred cceecceeecCCeEEEEecCCCccCcccceEEe
Q psy15224 173 FRKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 205 (502)
Q Consensus 173 ~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 205 (502)
+.+++.++.+|.-|++.+.+ ...+++.||+|-
T Consensus 503 ~k~~v~ev~~g~ecgi~~~~-~~~~~~~gd~ie 534 (537)
T 3izy_P 503 HKDDTSVVKTGMDCGLSLDE-EKIEFKVGDAII 534 (537)
T ss_dssp SSCCCSEEETTCEEEEESSS-SCSSCSCCCEEE
T ss_pred cCcccceEcCCCEEEEEEcC-cccCCCCCCEEE
Confidence 99999999999999999986 245899999873
No 208
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.69 E-value=0.01 Score=62.63 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=69.7
Q ss_pred CCeeEEEe--EEEeeCCCeEEEEEEEEEeeeecCCEEEEeecCCCeeEEEEEEEEcceecceeecCCeEEEEecCCC-cc
Q psy15224 120 GAFLLPVE--DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTK-RE 196 (502)
Q Consensus 120 ~p~~~~v~--~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~-~~ 196 (502)
.|..+.|. .+|+.+. |.++.++|..|+|+.|..+.+ +. +....+|.||+.++++++++.+|.-|++.+.+.. -.
T Consensus 462 ~~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~-~~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~ 538 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DD-GETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGK 538 (594)
T ss_dssp CCEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-TT-SCEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTT
T ss_pred eeEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-cC-CcEEEEEehhcccCccccccCCCCEEEEEEeCcccCC
Confidence 34455444 6898776 899999999999999999987 43 3367899999999999999999999999998632 26
Q ss_pred CcccceEEeCC
Q psy15224 197 DVERGQVLAKP 207 (502)
Q Consensus 197 ~i~~G~vl~~~ 207 (502)
+++.||+|-.-
T Consensus 539 ~~~~~d~~~~~ 549 (594)
T 1g7s_A 539 TIHEGDTLYVD 549 (594)
T ss_dssp TBCTTCEEEEC
T ss_pred CCCCCCEEEEE
Confidence 89999998643
No 209
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.54 E-value=0.0043 Score=55.40 Aligned_cols=86 Identities=23% Similarity=0.275 Sum_probs=49.9
Q ss_pred cCCEEEEEEECCCCCC-cchHHHHHHHHH----hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 7 QMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 7 ~~D~ailvVda~~g~~-~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
.+|++++|.|.++--. ....+.+..+.. .++|.+ +|.||+|+.+.... . .++...+.... ..+++.
T Consensus 80 ~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~pii-lV~NK~Dl~~~r~v-~--~~~~~~~a~~~-----~~~~~e 150 (192)
T 2cjw_A 80 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII-LVGNKSDLVRXREV-S--VSEGRAXAVVF-----DXKFIE 150 (192)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE-EEEECTTCGGGCCS-C--HHHHHHHHHHT-----TCEEEE
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEE-EEEechhhhccccc-c--HHHHHHHHHHh-----CCceEE
Confidence 4899999999875211 111222232332 267754 45999998642110 0 01112222222 257999
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+||++|. ++.++++.+.+.+
T Consensus 151 ~SA~~g~----------~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 151 TSAAVQH----------NVKELFEGIVRQV 170 (192)
T ss_dssp CBTTTTB----------SHHHHHHHHHHHH
T ss_pred eccccCC----------CHHHHHHHHHHHH
Confidence 9999987 8888888876543
No 210
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=96.51 E-value=0.0046 Score=44.49 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=39.0
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceE
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVE 500 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~ 500 (502)
.|++||.|+|++|-++|..|.|++++. .++.+.-+...+. +++-..+|+
T Consensus 17 ~F~~GDHVkVi~G~~~getGlVV~v~~--d~v~v~SD~t~~E--i~V~~~dL~ 65 (69)
T 2do3_A 17 YFKMGDHVKVIAGRFEGDTGLIVRVEE--NFVILFSDLTMHE--LKVLPRDLQ 65 (69)
T ss_dssp SCCTTCEEEESSSTTTTCEEEEEEECS--SCEEEEESSSCSE--EEECTTSEE
T ss_pred eccCCCeEEEeccEEcCceEEEEEEeC--CEEEEEeCCCCCE--EEEEhHHhh
Confidence 599999999999999999999999994 4788877777544 455555544
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.51 E-value=0.011 Score=53.27 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=54.8
Q ss_pred cCCEEEEEEECCCCCCcchHHHH----HHHH-H---hCCCeEEEEEEcC-CCCChHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15224 7 QMDGAILVCSAADGPMPQTREHI----LLAR-Q---VGVPYIVVFLNKA-DMVDDEELLELVEIEIRELLNKYEFPGNDI 77 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l----~~~~-~---~~i~~iiv~iNK~-D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 77 (502)
.+|++|+|||+++-.-...++-+ .++. . .++|.+|+ .||. |+.+. -... ++.+.|.--... ..+
T Consensus 125 ~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVl-ANKqqDlp~A-ms~~----EI~e~L~L~~l~-R~W 197 (227)
T 3l82_B 125 VVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVL-SCISQGDVKR-MPCF----YLAHELHLNLLN-HPW 197 (227)
T ss_dssp HCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEE-EEESSTTSCB-CCHH----HHHHHTTGGGGC-SCE
T ss_pred CCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEE-eCCCcCccCC-CCHH----HHHHHcCCcCCC-CCE
Confidence 58999999999875322244432 2221 1 47786666 7995 67654 0011 233333211122 367
Q ss_pred eEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 78 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 78 ~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
.+.++||++|. ++.+-+++|.+.+
T Consensus 198 ~Iq~csA~TGe----------GL~EGLdWL~~~l 221 (227)
T 3l82_B 198 LVQDTEAETLT----------GFLNGIEWILEEV 221 (227)
T ss_dssp EEEEEETTTCT----------THHHHHHHHTTTT
T ss_pred EEEEeECCCCc----------CHHHHHHHHHHHH
Confidence 89999999997 8999999998755
No 212
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.48 E-value=0.0038 Score=57.07 Aligned_cols=88 Identities=22% Similarity=0.234 Sum_probs=55.4
Q ss_pred ccCCEEEEEEECCCCCC-cchHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 6 AQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~-~qt~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
..+|++++|.|.+.-.. ......+..+.. .++| +++|.||+|+.+.... ..++...+.+..+ .+++.
T Consensus 84 ~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~~r~V---~~~e~~~~a~~~~-----~~~~e 154 (216)
T 4dkx_A 84 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLADKRQV---SIEEGERKAKELN-----VMFIE 154 (216)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGGGCCS---CHHHHHHHHHHHT-----CEEEE
T ss_pred ccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeeccchHhcCcc---cHHHHhhHHHHhC-----CeeEE
Confidence 46899999999876321 122233333332 3456 4555899999653110 0123444555554 46899
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
+||++|. ++.++++.|.+.++
T Consensus 155 ~SAktg~----------nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 155 TSAKAGY----------NVKQLFRRVAAALP 175 (216)
T ss_dssp EBTTTTB----------SHHHHHHHHHHHC-
T ss_pred EeCCCCc----------CHHHHHHHHHHHHH
Confidence 9999998 89999998877665
No 213
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=96.45 E-value=0.0026 Score=51.36 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=32.5
Q ss_pred cccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEE
Q psy15224 447 ILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 482 (502)
Q Consensus 447 ~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~ 482 (502)
..+..||.|.|++|+++|.+|.|.++++.++++.|+
T Consensus 14 m~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VE 49 (115)
T 2zjr_R 14 LHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVE 49 (115)
T ss_dssp CSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEES
T ss_pred CcccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence 368999999999999999999999999888887664
No 214
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.43 E-value=0.0028 Score=63.69 Aligned_cols=43 Identities=30% Similarity=0.364 Sum_probs=26.8
Q ss_pred hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccccc
Q psy15224 35 VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLAL 88 (502)
Q Consensus 35 ~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~g~ 88 (502)
.++|.+++ +||+|+... ...+ ++.+.+... ..+++|+||..+.
T Consensus 213 ~~kP~i~v-~NK~D~~~~-~~l~----~l~~~~~~~-----~~~vv~iSA~~e~ 255 (397)
T 1wxq_A 213 VNKPMVIA-ANKADAASD-EQIK----RLVREEEKR-----GYIVIPTSAAAEL 255 (397)
T ss_dssp HHSCEEEE-EECGGGSCH-HHHH----HHHHHHHHT-----TCEEEEECHHHHH
T ss_pred cCCCEEEE-EeCccccch-HHHH----HHHHHHhhc-----CCcEEEEeccchh
Confidence 45786665 999998742 2222 333333322 2479999999876
No 215
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.39 E-value=0.01 Score=57.55 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=46.4
Q ss_pred ccCCEEEEEEECCCCCCcchHHHH----HHHHH--hCCCeEEEEEEcCCCCChHHH---HHHHHHHHHHHHhhcCCCCCC
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHI----LLARQ--VGVPYIVVFLNKADMVDDEEL---LELVEIEIRELLNKYEFPGND 76 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l----~~~~~--~~i~~iiv~iNK~D~~~~~~~---~~~i~~~i~~~l~~~~~~~~~ 76 (502)
..|+++|+|+|+++. .....+.+ ..+.. -++|.++ +.||+|+.+.+++ ...+..+..+.+.+.++....
T Consensus 71 r~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipill-vgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~ 148 (331)
T 3r7w_B 71 KSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEV-LIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQ 148 (331)
T ss_dssp TTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEE-ECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCC
T ss_pred cCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEE-EEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccC
Confidence 578999999999876 44444333 22222 3567555 4999999875322 222333333333332222235
Q ss_pred CeEEEccccc
Q psy15224 77 IPIIKGSAKL 86 (502)
Q Consensus 77 ~~ii~iSa~~ 86 (502)
.+++..||++
T Consensus 149 i~f~eTSAkd 158 (331)
T 3r7w_B 149 VSFYLTSIFD 158 (331)
T ss_dssp EEEECCCSSS
T ss_pred ceEEEeccCC
Confidence 7899999986
No 216
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=96.34 E-value=0.0037 Score=52.33 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=32.4
Q ss_pred cccCCCCeEEEecCCCCCCe-EEEEEEeCCCcEEEEE
Q psy15224 447 ILYQLDELVRIKDGPFTDFS-GNIEEVNYEKSRVRVS 482 (502)
Q Consensus 447 ~~~~~G~~V~I~~GPf~g~~-g~v~~~~~~~~rv~v~ 482 (502)
..+..||.|.|+.|+++|.+ |.|.+++..++++.|+
T Consensus 47 ~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VE 83 (145)
T 2zkr_t 47 MPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIE 83 (145)
T ss_dssp CBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEET
T ss_pred cccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEe
Confidence 46899999999999999999 9999999888887663
No 217
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.34 E-value=0.00079 Score=66.69 Aligned_cols=75 Identities=17% Similarity=0.087 Sum_probs=46.0
Q ss_pred cCCEEEEEEECCCCCCcchHH-HHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhc--CCCCCCCeEEEcc
Q psy15224 7 QMDGAILVCSAADGPMPQTRE-HILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY--EFPGNDIPIIKGS 83 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e-~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~--~~~~~~~~ii~iS 83 (502)
.+|++++|+|++.++..++.. .+..+...+.|.++| +||+|+.+.... +.+.+... .+.....+++++|
T Consensus 167 ~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V-~NK~Dl~~~~~~-------~~~~~~~~~~~l~~~~~~v~~~S 238 (353)
T 2x2e_A 167 ENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGV-ITKLDLMDEGTD-------ARDVLENKLLPLRRGYIGVVNRS 238 (353)
T ss_dssp TTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEE-EECGGGSCTTCC-------CHHHHTTCSSCCTTCEEECCCCC
T ss_pred CCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEE-eccccccCcchh-------HHHHHhCCcccccCCceEEEeCC
Confidence 356777788988877777653 555565668886665 999999864210 11112111 1111124688999
Q ss_pred cccccc
Q psy15224 84 AKLALE 89 (502)
Q Consensus 84 a~~g~~ 89 (502)
|++|.+
T Consensus 239 A~~~~~ 244 (353)
T 2x2e_A 239 QKDIDG 244 (353)
T ss_dssp HHHHHT
T ss_pred cccccc
Confidence 999874
No 218
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.18 E-value=0.0055 Score=61.83 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=46.1
Q ss_pred CCEEEEEEECC-CCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccc
Q psy15224 8 MDGAILVCSAA-DGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKL 86 (502)
Q Consensus 8 ~D~ailvVda~-~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~ 86 (502)
+|+++++++++ .|+.+.+.+.+..+.. +++ +|+|+||+|+.+. ......+.++.+.+...+ ++++..|+.+
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~-iIlVinK~Dll~~-~ev~~~k~~i~~~~~~~~-----i~~~~~sa~~ 210 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKADTLTP-EECQQFKKQIMKEIQEHK-----IKIYEFPETD 210 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSE-EEEEEESTTSSCH-HHHHHHHHHHHHHHHHHT-----CCCCCCC---
T ss_pred eeEEEEEecCcccCCCHHHHHHHHHHhc-cCc-EEEEEEcccCccH-HHHHHHHHHHHHHHHHcC-----CeEEeCCCCC
Confidence 55677777776 6888888777766654 666 4555999999885 334444556677776554 4577789877
Q ss_pred cc
Q psy15224 87 AL 88 (502)
Q Consensus 87 g~ 88 (502)
+.
T Consensus 211 ~~ 212 (418)
T 2qag_C 211 DE 212 (418)
T ss_dssp --
T ss_pred Cc
Confidence 65
No 219
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.17 E-value=0.0047 Score=50.13 Aligned_cols=37 Identities=24% Similarity=0.499 Sum_probs=33.1
Q ss_pred ccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEE
Q psy15224 446 KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 482 (502)
Q Consensus 446 ~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~ 482 (502)
+..+..||.|.|+.|.++|.+|.|.++++.++++.|+
T Consensus 43 ~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VE 79 (121)
T 3j21_U 43 NLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVE 79 (121)
T ss_dssp EEECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEET
T ss_pred ccccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEe
Confidence 3468999999999999999999999999888887764
No 220
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.09 E-value=0.015 Score=53.84 Aligned_cols=95 Identities=12% Similarity=0.092 Sum_probs=51.4
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHH-----HhCCCeEEEEEEcCCCCChH---HHHHHHHHHHHHHHhhcCCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLAR-----QVGVPYIVVFLNKADMVDDE---ELLELVEIEIRELLNKYEFPGND 76 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~-----~~~i~~iiv~iNK~D~~~~~---~~~~~i~~~i~~~l~~~~~~~~~ 76 (502)
...+|++|+|+|+. .....+.+.+..+. ..+.|.++ ++||+|+.+.. +......+.+..+++.++.
T Consensus 110 ~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~ii-v~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~---- 183 (239)
T 3lxx_A 110 SPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMIL-IFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD---- 183 (239)
T ss_dssp TTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEE-EEECGGGC------------CHHHHHHHHHHSS----
T ss_pred CCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEE-EEeCCccCCcccHHHHHHhchHHHHHHHHHcCC----
Confidence 34679999999997 45555555554443 23446554 59999997642 1222222356666766654
Q ss_pred CeEEEccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 77 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 77 ~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
.++++++..+.+. ...++.+|++.+...+
T Consensus 184 -~~~~~~~~~~~~~-----~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 184 -RYCALNNKATGAE-----QEAQRAQLLGLIQRVV 212 (239)
T ss_dssp -SEEECCTTCCHHH-----HHHHHHHHHHHHHHHH
T ss_pred -EEEEEECCCCccc-----cHHHHHHHHHHHHHHH
Confidence 3555655422100 0126778888776544
No 221
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.07 E-value=0.016 Score=58.36 Aligned_cols=86 Identities=23% Similarity=0.332 Sum_probs=54.5
Q ss_pred ccCCEEEEEEECCCCCCcch----HHHHHHHH-HhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15224 6 AQMDGAILVCSAADGPMPQT----REHILLAR-QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 80 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt----~e~l~~~~-~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 80 (502)
..+|.++.++|+......+. ++...++. ..+.|.+++ +||+|+... +.+ +++...++.. ..+++
T Consensus 234 era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILV-lNKlDl~~~-~~~----~~l~~~l~~~-----g~~vi 302 (416)
T 1udx_A 234 ARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVA-LNKVDLLEE-EAV----KALADALARE-----GLAVL 302 (416)
T ss_dssp TSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEE-EECCTTSCH-HHH----HHHHHHHHTT-----TSCEE
T ss_pred HHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEE-EECCChhhH-HHH----HHHHHHHHhc-----CCeEE
Confidence 46899999999961111111 12222222 246787776 899999874 322 2344444432 25799
Q ss_pred EccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 81 KGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 81 ~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
++||.++. ++.+|++.|.+.+.
T Consensus 303 ~iSA~~g~----------gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 303 PVSALTGA----------GLPALKEALHALVR 324 (416)
T ss_dssp ECCTTTCT----------THHHHHHHHHHHHH
T ss_pred EEECCCcc----------CHHHHHHHHHHHHH
Confidence 99999987 88898888876654
No 222
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.03 E-value=0.0091 Score=58.55 Aligned_cols=91 Identities=20% Similarity=0.112 Sum_probs=50.5
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCC--CCCCeEEEcc
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP--GNDIPIIKGS 83 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~--~~~~~ii~iS 83 (502)
..+|++++++|+..|...| .+.. ....++.+++ +||+|+............++...+..+.-. ....+++++|
T Consensus 167 ~~~d~vl~v~d~~~~~~~~---~i~~-~i~~~~~ivv-lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~S 241 (337)
T 2qm8_A 167 DLTDFFLVLMLPGAGDELQ---GIKK-GIFELADMIA-VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTIS 241 (337)
T ss_dssp TTSSEEEEEECSCC---------CCT-THHHHCSEEE-EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEB
T ss_pred hhCCEEEEEEcCCCcccHH---HHHH-HHhccccEEE-EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEe
Confidence 5789999999986542211 0100 0112355665 899998653232223333444444322210 0125789999
Q ss_pred ccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 84 AKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 84 a~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
|++|. ++.+|++.|.+..
T Consensus 242 al~g~----------gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 242 GLHGK----------GLDSLWSRIEDHR 259 (337)
T ss_dssp TTTTB----------SHHHHHHHHHHHH
T ss_pred CCCCC----------CHHHHHHHHHHHH
Confidence 99987 7888888776643
No 223
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.98 E-value=0.0045 Score=64.93 Aligned_cols=57 Identities=33% Similarity=0.229 Sum_probs=43.4
Q ss_pred cccCCEEEEEEECCC-CCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHH
Q psy15224 5 AAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEI 63 (502)
Q Consensus 5 ~~~~D~ailvVda~~-g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i 63 (502)
+..+|++++|+|+.. +...++.+++..+...+.|.++| +||+|+.+. +.+.++...+
T Consensus 186 l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilV-lNK~Dl~~~-~el~~~~~~l 243 (550)
T 2qpt_A 186 AERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVV-LNKADMVET-QQLMRVYGAL 243 (550)
T ss_dssp HHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEE-EECGGGSCH-HHHHHHHHHH
T ss_pred HHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEE-EECCCccCH-HHHHHHHHHh
Confidence 456899999999988 68888888888888777785555 999999985 3334444444
No 224
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=95.96 E-value=0.0063 Score=48.52 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=32.3
Q ss_pred cccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEE
Q psy15224 447 ILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 482 (502)
Q Consensus 447 ~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~ 482 (502)
..+..||.|.|++|+.+|.+|.|.++++.++++.|+
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVE 40 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVE 40 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEET
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEe
Confidence 358899999999999999999999999888887764
No 225
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=95.80 E-value=0.011 Score=48.09 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=32.9
Q ss_pred ccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEE
Q psy15224 446 KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 482 (502)
Q Consensus 446 ~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~ 482 (502)
+..++.||.|.|+.|.++|.+|.|.++++.++++.|+
T Consensus 47 s~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VE 83 (127)
T 3u5e_Y 47 ALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVD 83 (127)
T ss_dssp EEECCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred cccccCCCEEEEeecCCCCccceEEEEECCCCEEEEe
Confidence 3468999999999999999999999999888887764
No 226
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=95.67 E-value=0.025 Score=46.59 Aligned_cols=53 Identities=11% Similarity=0.280 Sum_probs=42.4
Q ss_pred CCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEec-CcceeE-EeecCceEeC
Q psy15224 450 QLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIF-GRATPV-ELEFNQVEKI 502 (502)
Q Consensus 450 ~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~-g~~~~v-~~~~~~v~~~ 502 (502)
++|++|.|+.|+++|..|++.++|.++..+.|.++-- .....+ .++++++.++
T Consensus 72 ~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~~V~l~~~~~~~~~v~~l~~ddi~k~ 126 (127)
T 2ckk_A 72 APGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKL 126 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEEECSSTTTTCEEEEEEGGGEEEB
T ss_pred CCCCEEEEEecccCCcEEEEEEEeCCCcEEEEEEccCCCCCCEEEeeCHHHhhcc
Confidence 5899999999999999999999998877888888741 122245 5899988763
No 227
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=95.62 E-value=0.013 Score=46.15 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=30.4
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEE
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 482 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~ 482 (502)
.+..||.|.|++|..+|.+|.|.++++. +++.|+
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVe 36 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVE 36 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETT-TEEEET
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEe
Confidence 4789999999999999999999999987 777664
No 228
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=95.51 E-value=0.014 Score=48.82 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=33.0
Q ss_pred ccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEE
Q psy15224 446 KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 482 (502)
Q Consensus 446 ~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~ 482 (502)
+..++.||.|.|+.|.++|.+|.|.++++.++++.|+
T Consensus 46 s~~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VE 82 (150)
T 3iz5_Y 46 SIPIRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVE 82 (150)
T ss_dssp EEECCSSSEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred ccccCCCCEEEEeecCCCCccceEEEEEcCCCEEEEe
Confidence 4568999999999999999999999999988887763
No 229
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=95.47 E-value=0.019 Score=44.65 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=28.3
Q ss_pred CCeEEEecCCCCCCeEEEEEEeCCCcEEEEE
Q psy15224 452 DELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 482 (502)
Q Consensus 452 G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~ 482 (502)
||.|.|++|..+|.+|.|.++++.++++.|+
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVe 31 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVG 31 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence 8999999999999999999999888887664
No 230
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=95.45 E-value=0.016 Score=47.68 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=32.3
Q ss_pred ccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEE
Q psy15224 446 KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRV 481 (502)
Q Consensus 446 ~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v 481 (502)
+..+..||.|.|+.|.++|.+|.|.++.+.++++.|
T Consensus 46 s~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~V 81 (135)
T 4a17_S 46 SMPVRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHV 81 (135)
T ss_dssp EEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEE
T ss_pred cccccCCCEEEEeecCCCCceeeEEEEEcCCCEEEE
Confidence 346899999999999999999999999998887766
No 231
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=95.24 E-value=0.012 Score=57.89 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=53.2
Q ss_pred cccCCEEEEEEECCCCC-----------CcchHHHHHHHHH----hCCCeEEEEEEcCCCCChH----------------
Q psy15224 5 AAQMDGAILVCSAADGP-----------MPQTREHILLARQ----VGVPYIVVFLNKADMVDDE---------------- 53 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-----------~~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~---------------- 53 (502)
...+|++|+|+|.++-- +....+.+..+.. .++| +|++.||+|+....
T Consensus 214 f~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~ 292 (353)
T 1cip_A 214 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGS 292 (353)
T ss_dssp CTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSC
T ss_pred HhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc-EEEEEECcCchhhhccccchhhcccccCCC
Confidence 35789999999998621 1222223332222 3566 55559999984311
Q ss_pred HHHHHHHHHHHHHHhhcCCC--CCCCeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 54 ELLELVEIEIRELLNKYEFP--GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 54 ~~~~~i~~~i~~~l~~~~~~--~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
...++..+-+...+..+... ...+.++.+||++|. ++.++++.+.+
T Consensus 293 ~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~----------nV~~vF~~v~~ 340 (353)
T 1cip_A 293 NTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTK----------NVQFVFDAVTD 340 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHH----------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCch----------hHHHHHHHHHH
Confidence 01223333333333333221 235788999999987 78777777654
No 232
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=95.17 E-value=0.15 Score=35.28 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=44.9
Q ss_pred cCCCCeEEEe--cCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEe
Q psy15224 449 YQLDELVRIK--DGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 501 (502)
Q Consensus 449 ~~~G~~V~I~--~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~ 501 (502)
+-+|..|+|+ +-++-||+|.|.++. ++++.|+++--+=...|++.+++|+.
T Consensus 2 ilPG~~V~V~np~~~Yy~y~G~VQRvs--dgkaaVLFEGGnWDKLVTf~L~eLe~ 54 (66)
T 2jz2_A 2 IFPGATVRVTNVDDTYYRFEGLVQRVS--DGKAAVLFENGNWDKLVTFRLSELEA 54 (66)
T ss_dssp CCTTCEEEECCTTSTTBTCEEEEEEEE--TTEEEEEEESSSCEEEEEEESTTEEE
T ss_pred ccCCCEEEEeCCCCcccceeEEEEEec--CCcEEEEecCCCceeEEEEEhhHcee
Confidence 4589999998 468999999999998 56899999997788899999999986
No 233
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.07 E-value=0.048 Score=52.41 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=43.7
Q ss_pred ccCCEEEEEEECCC-CCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 6 AQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 6 ~~~D~ailvVda~~-g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
+.++++++++++.. |+.+.+.+.+..+. .+++.++ ++||.|+.+..+ .....+++.++++..+ ++++.+||
T Consensus 125 ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iil-V~~K~Dl~~~~e-~~~~~~~~~~~~~~~~-----~~~~e~Sa 196 (301)
T 2qnr_A 125 NRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVP-VIAKADTLTLKE-RERLKKRILDEIEEHN-----IKIYHLPD 196 (301)
T ss_dssp CCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEE-EECCGGGSCHHH-HHHHHHHHHHHHHHTT-----CCCCCCC-
T ss_pred hhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEE-EEEeCCCCCHHH-HHHHHHHHHHHHHHcC-----CeEEecCC
Confidence 34566777777544 68877765555443 2456554 599999987522 2333456666776654 46888999
Q ss_pred ccc
Q psy15224 85 KLA 87 (502)
Q Consensus 85 ~~g 87 (502)
++|
T Consensus 197 ~~~ 199 (301)
T 2qnr_A 197 AES 199 (301)
T ss_dssp ---
T ss_pred ccc
Confidence 987
No 234
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.02 E-value=0.057 Score=51.08 Aligned_cols=89 Identities=13% Similarity=0.057 Sum_probs=55.0
Q ss_pred cCCEEEEEEECCCCCCcchHHHH----HHH-HH---hCCCeEEEEEEc-CCCCChHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy15224 7 QMDGAILVCSAADGPMPQTREHI----LLA-RQ---VGVPYIVVFLNK-ADMVDDEELLELVEIEIRELLNKYEFPGNDI 77 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l----~~~-~~---~~i~~iiv~iNK-~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 77 (502)
.+|++|+|||+++-.--..++-+ .++ .. .|+|.+|+ .|| -|+.+. -... ++.+.|.--... ..+
T Consensus 210 ~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVf-ANKkQDlp~A-ms~~----EI~e~L~L~~l~-r~W 282 (312)
T 3l2o_B 210 VVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVL-SCISQGDVKR-MPCF----YLAHELHLNLLN-HPW 282 (312)
T ss_dssp HCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEE-EEESSTTSCB-CCHH----HHHHHTTGGGGC-SCE
T ss_pred CCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEE-eCCcccccCC-CCHH----HHHHHcCCccCC-CcE
Confidence 58999999999874322233311 223 11 58887666 797 588654 0011 233333211122 367
Q ss_pred eEEEccccccccCCCCCCCcccHHHHHHHHhhcCC
Q psy15224 78 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 112 (502)
Q Consensus 78 ~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~p 112 (502)
.+.++||++|. |+.+-++.|.+.+.
T Consensus 283 ~Iq~csA~tGe----------GL~EGldWL~~~l~ 307 (312)
T 3l2o_B 283 LVQDTEAETLT----------GFLNGIEWILEEVE 307 (312)
T ss_dssp EEEEEETTTCT----------THHHHHHHHHHHSC
T ss_pred EEEecccCCCc----------CHHHHHHHHHHHHH
Confidence 89999999997 89998999887653
No 235
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.99 E-value=0.024 Score=51.67 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=49.2
Q ss_pred CCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChH-HHHHHHHHHHHHHHhhcCCCCCCCeEEEccccc
Q psy15224 8 MDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE-ELLELVEIEIRELLNKYEFPGNDIPIIKGSAKL 86 (502)
Q Consensus 8 ~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~-~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~ 86 (502)
.+..+.++|+..+...+.. + ....+.|.+++ +||+|+.+.. ...+ ++...++.++. ..+++++||++
T Consensus 140 ~~~~~~v~~~~~~~~~~~~-~---~~~~~~~~iiv-~NK~Dl~~~~~~~~~----~~~~~~~~~~~---~~~~~~~Sa~~ 207 (226)
T 2hf9_A 140 THKRIVVISTTEGDDTIEK-H---PGIMKTADLIV-INKIDLADAVGADIK----KMENDAKRINP---DAEVVLLSLKT 207 (226)
T ss_dssp CSEEEEEEEGGGCTTTTTT-C---HHHHTTCSEEE-EECGGGHHHHTCCHH----HHHHHHHHHCT---TSEEEECCTTT
T ss_pred cCcEEEEEecCcchhhHhh-h---hhHhhcCCEEE-EeccccCchhHHHHH----HHHHHHHHhCC---CCeEEEEEecC
Confidence 4556777886554332221 1 22256786666 9999986431 1122 33444444322 36899999999
Q ss_pred cccCCCCCCCcccHHHHHHHHhhc
Q psy15224 87 ALEGDTGPLGEQSILSLSKALDTY 110 (502)
Q Consensus 87 g~~~~~~w~~~~~i~~Ll~~l~~~ 110 (502)
|. ++.+|++.+.+.
T Consensus 208 g~----------gv~~l~~~l~~~ 221 (226)
T 2hf9_A 208 ME----------GFDKVLEFIEKS 221 (226)
T ss_dssp CT----------THHHHHHHHHHH
T ss_pred CC----------CHHHHHHHHHHH
Confidence 87 888998887653
No 236
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.057 Score=47.57 Aligned_cols=46 Identities=17% Similarity=0.373 Sum_probs=27.5
Q ss_pred ccCCEEEEEEECCCCCC--cchHHHHH-HHHH------hCCCeEEEEEEcCCCCCh
Q psy15224 6 AQMDGAILVCSAADGPM--PQTREHIL-LARQ------VGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~--~qt~e~l~-~~~~------~~i~~iiv~iNK~D~~~~ 52 (502)
..+|++++|+|+..... ....+.+. ++.. .++|.++| +||+|+.+.
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv-~nK~Dl~~~ 171 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA-CNKSELFTA 171 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEE-EECTTSTTC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEE-EEchHhcCC
Confidence 34899999999972211 11112222 2221 27785555 999999864
No 237
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.71 E-value=0.027 Score=55.63 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=51.2
Q ss_pred cccCCEEEEEEECCCCC-----------CcchHHHHHHHHH----hCCCeEEEEEEcCCCCChH----------------
Q psy15224 5 AAQMDGAILVCSAADGP-----------MPQTREHILLARQ----VGVPYIVVFLNKADMVDDE---------------- 53 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~-----------~~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~~~---------------- 53 (502)
...+|++|+|+|.++-- +......+..+.. .++| +|++.||+|+....
T Consensus 222 f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~ 300 (362)
T 1zcb_A 222 FDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGD 300 (362)
T ss_dssp CTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSC
T ss_pred hCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC-EEEEEEChhhhhhhccccchhhcCccccCC
Confidence 35789999999998621 1112223322221 3566 55559999985211
Q ss_pred -HHHHHHHHHHHHHHhhcCCC--CCCCeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 54 -ELLELVEIEIRELLNKYEFP--GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 54 -~~~~~i~~~i~~~l~~~~~~--~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
..+++..+-+...+..+.-. ...+.++.+||+++. ++.++++.+.+
T Consensus 301 ~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~----------nV~~vF~~v~~ 349 (362)
T 1zcb_A 301 PHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE----------NIRLVFRDVKD 349 (362)
T ss_dssp TTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH----------HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch----------hHHHHHHHHHH
Confidence 11222222222222232211 234678999999987 77777776654
No 238
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.37 E-value=0.058 Score=48.00 Aligned_cols=87 Identities=22% Similarity=0.170 Sum_probs=51.5
Q ss_pred ccCCEEEEEEECCCCCCcc-hHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 6 AQMDGAILVCSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~q-t~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
..+|++++|+|+.....-+ ....+..+.. .+.| +++++||+|+.+..... .++...+....+ ++++.
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~---~~~a~~l~~~~~-----~~~~d 146 (199)
T 2f9l_A 76 RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVP---TDEARAFAEKNN-----LSFIE 146 (199)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHTT-----CEEEE
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCcC---HHHHHHHHHHcC-----CeEEE
Confidence 4689999999987643222 2223333333 2455 55559999996531110 012334444332 57888
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhhcC
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDTYI 111 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~~~ 111 (502)
+||+++. ++.++++.|.+.+
T Consensus 147 ~Sal~~~----------~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 147 TSALDST----------NVEEAFKNILTEI 166 (199)
T ss_dssp CCTTTCT----------THHHHHHHHHHHH
T ss_pred EeCCCCC----------CHHHHHHHHHHHH
Confidence 9999987 7777777765543
No 239
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.90 E-value=0.12 Score=48.71 Aligned_cols=46 Identities=13% Similarity=0.021 Sum_probs=31.5
Q ss_pred ccCCEEEEEEECCC-CCCcchHHHHHHHHHh-C----CCeEEEEEEcCCCCCh
Q psy15224 6 AQMDGAILVCSAAD-GPMPQTREHILLARQV-G----VPYIVVFLNKADMVDD 52 (502)
Q Consensus 6 ~~~D~ailvVda~~-g~~~qt~e~l~~~~~~-~----i~~iiv~iNK~D~~~~ 52 (502)
..+|++++|+|++. .....+.+.+..+... + .| +++++||+|+.+.
T Consensus 118 ~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~-iivV~nK~Dl~~~ 169 (270)
T 1h65_A 118 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK-AIVALTHAQFSPP 169 (270)
T ss_dssp CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGG-EEEEEECCSCCCG
T ss_pred CCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccC-EEEEEECcccCCc
Confidence 36899999988865 4555555666655443 4 35 5556999999754
No 240
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.61 E-value=0.017 Score=57.06 Aligned_cols=76 Identities=18% Similarity=0.141 Sum_probs=42.8
Q ss_pred cccCCEEEEEEECCC-CCC-cchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy15224 5 AAQMDGAILVCSAAD-GPM-PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 82 (502)
Q Consensus 5 ~~~~D~ailvVda~~-g~~-~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~i 82 (502)
+..+|++||++|+.. ... .+..+.+..+...+.+.++| +||+|+.+.... ..+.++..... ...+++++
T Consensus 170 i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V-~nK~Dl~~~~~~-------~~~~~~~~~~~-~~~~~~~v 240 (360)
T 3t34_A 170 IEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGV-LTKIDLMDKGTD-------AVEILEGRSFK-LKYPWVGV 240 (360)
T ss_dssp HHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEE-EECGGGCCTTCC-------SHHHHTTSSSC-CSSCCEEE
T ss_pred hhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEE-EeCCccCCCccc-------HHHHHcCcccc-ccCCeEEE
Confidence 457899999998643 322 22234444444567776555 999999875211 11122222111 23567888
Q ss_pred ccccccc
Q psy15224 83 SAKLALE 89 (502)
Q Consensus 83 Sa~~g~~ 89 (502)
|+.++.+
T Consensus 241 ~~~s~~~ 247 (360)
T 3t34_A 241 VNRSQAD 247 (360)
T ss_dssp CCCCHHH
T ss_pred EECChHH
Confidence 8876543
No 241
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.51 E-value=0.15 Score=48.15 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=48.7
Q ss_pred ccccCCEEEEEEECC-CCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCC
Q psy15224 4 GAAQMDGAILVCSAA-DGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 72 (502)
Q Consensus 4 g~~~~D~ailvVda~-~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 72 (502)
+++.|+++++++|.. +|+.+++.+.+..+... ++ +|+++||+|.... +.....+..+.+.++..+.
T Consensus 108 ~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~-vI~Vi~K~D~lt~-~e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 108 PDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VN-IIPVIAKADTMTL-EEKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp CCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SE-EEEEETTGGGSCH-HHHHHHHHHHHHHHHHTTC
T ss_pred hhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-Cc-EEEEEeccccCCH-HHHHHHHHHHHHHHHHcCc
Confidence 355678899999965 89999999988888776 55 5555999999986 3344555666666665543
No 242
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=93.15 E-value=0.012 Score=51.10 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=30.7
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEE
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRV 481 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v 481 (502)
.+..||.|.|+.|..+|.+|+|.++++.++++.|
T Consensus 68 kIkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViV 101 (191)
T 3bbo_W 68 HVKVGDTVKVISGGEKGKIGEISKIHKHNSTVII 101 (191)
T ss_dssp CSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCC
T ss_pred eeecCCEEEEeecCCCCceEEEEEEECCCCEEEE
Confidence 4889999999999999999999999987777655
No 243
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.11 E-value=0.059 Score=54.21 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=42.6
Q ss_pred EEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccc
Q psy15224 10 GAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 84 (502)
Q Consensus 10 ~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa 84 (502)
++++++|+.+|+.+.+.+.+..+. .+++. |+++||+|....++ .......+...++.. .++++++|.
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~-~~~~v-I~Vi~KtD~Lt~~E-~~~l~~~I~~~L~~~-----gi~I~~is~ 217 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLD-SKVNI-IPIIAKADAISKSE-LTKFKIKITSELVSN-----GVQIYQFPT 217 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTC-SCSEE-EEEESCGGGSCHHH-HHHHHHHHHHHHBTT-----BCCCCCCC-
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHh-hCCCE-EEEEcchhccchHH-HHHHHHHHHHHHHHc-----CCcEEecCC
Confidence 467788999999999888777766 56665 45599999998633 344445555544432 356777775
No 244
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.24 E-value=0.15 Score=44.97 Aligned_cols=85 Identities=20% Similarity=0.173 Sum_probs=50.2
Q ss_pred ccCCEEEEEEECCCCCC-cchHHHHHHHHH---hCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15224 6 AQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 81 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~-~qt~e~l~~~~~---~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 81 (502)
..+|.+++|.|...... ......+..+.. .+.+ +++++||+|+.+..... .++...+.... .++++.
T Consensus 100 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~---~~~a~~l~~~~-----~~~~ld 170 (191)
T 1oix_A 100 RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVP---TDEARAFAEKN-----GLSFIE 170 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHT-----TCEEEE
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccC---HHHHHHHHHHc-----CCEEEE
Confidence 45789999999875321 111222333332 2445 55569999986531110 11233444433 257888
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 82 GSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 82 iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
+||+++. ++.++++.|.+
T Consensus 171 ~Sald~~----------~v~~l~~~l~~ 188 (191)
T 1oix_A 171 TSALDST----------NVEAAFQTILT 188 (191)
T ss_dssp CCTTTCT----------THHHHHHHHHH
T ss_pred EeCCCCC----------CHHHHHHHHHH
Confidence 9999987 88888888765
No 245
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.95 E-value=0.58 Score=43.57 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=30.2
Q ss_pred ccCCEEEEEEECCC-CCCcchHHHHHHHHHh-C----CCeEEEEEEcCCCCC
Q psy15224 6 AQMDGAILVCSAAD-GPMPQTREHILLARQV-G----VPYIVVFLNKADMVD 51 (502)
Q Consensus 6 ~~~D~ailvVda~~-g~~~qt~e~l~~~~~~-~----i~~iiv~iNK~D~~~ 51 (502)
..+|++++|+|++. .....+.+.+..+... + .| +++++||+|+.+
T Consensus 115 ~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nK~Dl~~ 165 (262)
T 3def_A 115 RTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCK-TLLVLTHAQFSP 165 (262)
T ss_dssp CEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGG-EEEEEECTTCCC
T ss_pred CCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcC-EEEEEeCcccCC
Confidence 37899999988765 3444555666655543 3 25 555699999963
No 246
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=90.02 E-value=0.6 Score=45.17 Aligned_cols=93 Identities=11% Similarity=0.100 Sum_probs=50.2
Q ss_pred ccCCEEEEEEECC-------CCCCcc----hHHHHHHHHH----hCCCeEEEEEEcCCCCChH-----------------
Q psy15224 6 AQMDGAILVCSAA-------DGPMPQ----TREHILLARQ----VGVPYIVVFLNKADMVDDE----------------- 53 (502)
Q Consensus 6 ~~~D~ailvVda~-------~g~~~q----t~e~l~~~~~----~~i~~iiv~iNK~D~~~~~----------------- 53 (502)
..++++|+|+|.+ +.-... ....+..+.. .++| ++++.||+|+.+..
T Consensus 189 ~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~ 267 (327)
T 3ohm_A 189 ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQ 267 (327)
T ss_dssp SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCS
T ss_pred CCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce-EEEEEECchhhhhhhccchHhhhchhccCCC
Confidence 5689999999765 221111 2222222221 3566 45559999985321
Q ss_pred HHHHHHHHHHHHHHhhcCCC-CCCCeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 54 ELLELVEIEIRELLNKYEFP-GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 54 ~~~~~i~~~i~~~l~~~~~~-~~~~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
..+++..+-+...+..+... ...+.+..+||+++. ++..+++.+.+
T Consensus 268 ~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~----------nV~~vF~~v~~ 314 (327)
T 3ohm_A 268 RDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTE----------NIRFVFAAVKD 314 (327)
T ss_dssp SCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHH----------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCH----------HHHHHHHHHHH
Confidence 11233333333344433322 124567889999887 77777666544
No 247
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.34 E-value=0.17 Score=52.06 Aligned_cols=42 Identities=21% Similarity=0.182 Sum_probs=27.9
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCe-EEEEEEcCCCCCh
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQVGVPY-IVVFLNKADMVDD 52 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~-iiv~iNK~D~~~~ 52 (502)
.+|.++||+||..|.. ..+.+..+... +|. .+| +||+|....
T Consensus 213 ~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvV-lNK~D~~~~ 255 (504)
T 2j37_W 213 QPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVI-VTKLDGHAK 255 (504)
T ss_dssp CCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEE-EECTTSCCC
T ss_pred cCceEEEEEecccccc--HHHHHHHHHhh-cCceEEE-EeCCccccc
Confidence 6899999999998753 33333333322 553 444 999998754
No 248
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.92 E-value=0.4 Score=48.37 Aligned_cols=46 Identities=20% Similarity=0.110 Sum_probs=28.4
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCC-CeEEEEEEcCCCCCh
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGV-PYIVVFLNKADMVDD 52 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i-~~iiv~iNK~D~~~~ 52 (502)
.+..+|.++||+||..|. .....+... ..++ +...+++||+|....
T Consensus 207 ~~~~~d~vllVvda~~g~--~~~~~~~~~-~~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 207 EITNPDEIILVIDGTIGQ--QAGIQAKAF-KEAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp SSSCCSEEEEEEEGGGGG--GHHHHHHHH-HTTSCSCEEEEEECSSSCST
T ss_pred HHhcCcceeEEeeccccH--HHHHHHHHH-hhcccCCeEEEEeCCCCccc
Confidence 344789999999998763 222222221 2235 634555999998653
No 249
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=87.15 E-value=0.56 Score=45.60 Aligned_cols=45 Identities=27% Similarity=0.334 Sum_probs=25.9
Q ss_pred ccCCEEEEEEECCC-------CCC----cchHHHHHHHHH----hCCCeEEEEEEcCCCCC
Q psy15224 6 AQMDGAILVCSAAD-------GPM----PQTREHILLARQ----VGVPYIVVFLNKADMVD 51 (502)
Q Consensus 6 ~~~D~ailvVda~~-------g~~----~qt~e~l~~~~~----~~i~~iiv~iNK~D~~~ 51 (502)
..++++|+|+|.++ ... ....+.+..+.. .++| ++++.||+|+.+
T Consensus 183 ~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~p-iiLv~NK~DL~~ 242 (340)
T 4fid_A 183 SDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAV-KLIFLNKMDLFE 242 (340)
T ss_dssp CSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSE-EEEEEECHHHHH
T ss_pred ccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCe-EEEEEECchhhh
Confidence 57899999999872 111 112222322222 3566 455599999854
No 250
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=86.87 E-value=0.51 Score=46.23 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=17.2
Q ss_pred CeEEEccccccccCCCCCCCcccHHHHHHHHhh
Q psy15224 77 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 109 (502)
Q Consensus 77 ~~ii~iSa~~g~~~~~~w~~~~~i~~Ll~~l~~ 109 (502)
..++.+||+++. ++.++++.+.+
T Consensus 319 ~~~~eTSA~d~~----------nV~~vF~~v~~ 341 (354)
T 2xtz_A 319 FKIYRTTALDQK----------LVKKTFKLVDE 341 (354)
T ss_dssp EEEEECCTTCHH----------HHHHHHHHHHH
T ss_pred eEEEEEEeecch----------hHHHHHHHHHH
Confidence 457899999987 77777766543
No 251
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=86.87 E-value=2.4 Score=42.36 Aligned_cols=93 Identities=18% Similarity=0.060 Sum_probs=56.2
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC---------ChHHHHHHHHHHHHHHH----hhcC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV---------DDEELLELVEIEIRELL----NKYE 71 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~---------~~~~~~~~i~~~i~~~l----~~~~ 71 (502)
+...|..++ +|... .+.|....+..+...+.|.+++ +||.|+. |... .+.+.+.+.++. +..+
T Consensus 146 L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV-~tkpdlllLDEPtsgLD~~~-~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 146 FYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFV-RTKVDSDITNEADGEPQTFD-KEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp GGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEE-ECCHHHHHHHHHTTCCTTCC-HHHHHHHHHHHHHHHHHHTT
T ss_pred CCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEE-EecCcccccCcccccCCHHH-HHHHHHHHHHHHHHHHHhcC
Confidence 444565555 77754 4677777777777788876555 9999974 1100 122233333332 2333
Q ss_pred CCCCCCeEEEccc--cccccCCCCCCCcccHHHHHHHHhhcCCC
Q psy15224 72 FPGNDIPIIKGSA--KLALEGDTGPLGEQSILSLSKALDTYIPT 113 (502)
Q Consensus 72 ~~~~~~~ii~iSa--~~g~~~~~~w~~~~~i~~Ll~~l~~~~p~ 113 (502)
.. ...++++|+ .++. ++++|.+.+.+.+|.
T Consensus 222 ~~--~~~iiliSsh~l~~~----------~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 222 IA--EPPIFLLSNKNVCHY----------DFPVLMDKLISDLPI 253 (413)
T ss_dssp CS--SCCEEECCTTCTTST----------THHHHHHHHHHHSCG
T ss_pred CC--CCcEEEEecCcCCcc----------CHHHHHHHHHHhCcc
Confidence 22 236899999 4433 689999999888874
No 252
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=86.12 E-value=0.81 Score=45.57 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=26.4
Q ss_pred ccCCEEEEEEECCC-------CCCcc----hHHHHHHHHH----hCCCeEEEEEEcCCCCC
Q psy15224 6 AQMDGAILVCSAAD-------GPMPQ----TREHILLARQ----VGVPYIVVFLNKADMVD 51 (502)
Q Consensus 6 ~~~D~ailvVda~~-------g~~~q----t~e~l~~~~~----~~i~~iiv~iNK~D~~~ 51 (502)
..++++|+|+|.++ ..... ....+..+.. .++|. |++.||+|+.+
T Consensus 239 ~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi-iLvgNK~DL~~ 298 (402)
T 1azs_C 239 NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV-ILFLNKQDLLA 298 (402)
T ss_dssp TTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE-EEEEECHHHHH
T ss_pred cCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE-EEEEEChhhhh
Confidence 56899999999986 11111 2222322222 34664 55599999843
No 253
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=84.89 E-value=1 Score=34.26 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=42.0
Q ss_pred EEeeeecCCEEEEeecCC-CeeEEEEEEEE-cceeccee-ecCCeEEEEecCCCccCcccceEEe
Q psy15224 144 ERGIVRVGEELEIIGIKD-TVKTTCTGVEM-FRKLLDQG-QAGDNIGLLLRGTKREDVERGQVLA 205 (502)
Q Consensus 144 ~sG~l~~gd~v~i~p~~~-~~~~~V~~i~~-~~~~v~~a-~aG~~v~l~l~~~~~~~i~~G~vl~ 205 (502)
....+.+||.|.+..... ....+|..|.. .+++++.| .+|+.+.+.+. ..+..|++|-
T Consensus 26 ~rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~~G~~i~~A~~~~~~v~i~~~----~~~~~~dilR 86 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARHPLQIVKFKVK----RPLFPYNMMR 86 (89)
T ss_dssp ESSCBCTTCEEEEESTTSCCEEEECCCEEETTSCEESCBCSTTCEEEEECS----SCCCTTCEEE
T ss_pred EcCCcCCCCEEEEEcCCCCcEEEEeHHeEcCCCCEeeEcCCCCeEEEEECC----CCCCCCCEEE
Confidence 478899999999764322 35577888874 45789998 89999999654 3556677653
No 254
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=83.29 E-value=4.9 Score=30.46 Aligned_cols=54 Identities=13% Similarity=0.344 Sum_probs=42.4
Q ss_pred ccccCCCCeEEEec--CCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecC--ceEe
Q psy15224 446 KILYQLDELVRIKD--GPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFN--QVEK 501 (502)
Q Consensus 446 ~~~~~~G~~V~I~~--GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~--~v~~ 501 (502)
...|++|++|+.++ ||+ +++.|..++....++.|.++-.+..-.--++.+ .|.+
T Consensus 17 ~~~F~vGmkLEA~D~~~~~--~~a~i~~v~~~~~~v~VHfdGW~~~yDeWv~~dS~~I~P 74 (88)
T 2eqm_A 17 GITFEIGARLEALDYLQKW--YPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRP 74 (88)
T ss_dssp SCCCCSSCEEEEECTTSCE--EEEEEEEEETTTTEEEEEESSSTTTEEEEEETTSCCEEC
T ss_pred cCcCCCCCEEEEEcCCCCe--eEEEEEEEeccCCEEEEEECCCCCcccEEeeCCCCcEec
Confidence 45799999999997 787 899999999777888888888777666666655 4443
No 255
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=79.36 E-value=2.3 Score=30.77 Aligned_cols=52 Identities=13% Similarity=0.292 Sum_probs=32.2
Q ss_pred CCCCeEEEecCC--------------CCCCeEEEEEEeCC--CcEEEEEEEe---cCcceeEEeecCceEe
Q psy15224 450 QLDELVRIKDGP--------------FTDFSGNIEEVNYE--KSRVRVSVTI---FGRATPVELEFNQVEK 501 (502)
Q Consensus 450 ~~G~~V~I~~GP--------------f~g~~g~v~~~~~~--~~rv~v~v~~---~g~~~~v~~~~~~v~~ 501 (502)
++||+|||.+.- ++|++|+|..+-.. .+.+...+++ |+....+.+-.+.++-
T Consensus 2 k~GdrVrV~~sv~Vyh~P~~r~~~fDl~GmEGeV~~~v~~wkGr~ISanlP~~V~F~~kF~aHlredElE~ 72 (75)
T 1dj7_B 2 NVGDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVLTEWQGRPISANLPVLVKFEQRFKAHFRPDEVTL 72 (75)
T ss_dssp CTTCEEEECSCCEESCCTTSTTSCEECTTCEEEEEEECSEETTEECCCSSCEEEEETTTEEEEECGGGEEE
T ss_pred CCCCEEEEcccEEEEeCCccCCCCcccccCEEEEEEEEeeccCcEecCCCCEEEEEehHhhhhcchhheee
Confidence 689999998532 69999999987621 2222221111 3456667777777664
No 256
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=75.69 E-value=5.6 Score=28.23 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=36.5
Q ss_pred cCCCCeEEEe--cCCCCCCeEEEEEEeCCCcE--EEEEEEecCcceeEE--eecCceEe
Q psy15224 449 YQLDELVRIK--DGPFTDFSGNIEEVNYEKSR--VRVSVTIFGRATPVE--LEFNQVEK 501 (502)
Q Consensus 449 ~~~G~~V~I~--~GPf~g~~g~v~~~~~~~~r--v~v~v~~~g~~~~v~--~~~~~v~~ 501 (502)
+.+|++|||+ +--+-++.|.|.+++..+-+ +.|+++-.+-.-..+ +..++|+.
T Consensus 2 i~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~TnnFal~ELe~ 60 (70)
T 1qp2_A 2 VQRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNYSGINTNNFAEDELVE 60 (70)
T ss_dssp CCTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCSSCCSEEEECGGGEEE
T ss_pred cCCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEecccccccccccccChhHeeE
Confidence 4689999999 55689999999999975323 666665544333344 66666653
No 257
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=73.77 E-value=12 Score=26.34 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=29.5
Q ss_pred CccccCCCCeEEEe--cCCCCCCeEEEEEEeCCCcEEEEEE
Q psy15224 445 PKILYQLDELVRIK--DGPFTDFSGNIEEVNYEKSRVRVSV 483 (502)
Q Consensus 445 ~~~~~~~G~~V~I~--~GPf~g~~g~v~~~~~~~~rv~v~v 483 (502)
....|.+|+.|+.. +|- -+.|+|++|+..++...|.+
T Consensus 10 ~~~~f~vGddVLA~wtDGl--~Y~gtI~~V~~~~gtC~V~F 48 (66)
T 2eqj_A 10 PACKFEEGQDVLARWSDGL--FYLGTIKKINILKQSCFIIF 48 (66)
T ss_dssp CCCCSCTTCEEEEECTTSC--EEEEEEEEEETTTTEEEEEE
T ss_pred ccccccCCCEEEEEEccCc--EEEeEEEEEccCCcEEEEEE
Confidence 34469999999887 564 47899999998878877764
No 258
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=73.50 E-value=5.6 Score=39.95 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=26.6
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~ 52 (502)
..+|.++||+||..|- .....+..... .++...+++||+|....
T Consensus 211 ~~pd~vlLVvDA~~gq--~a~~~a~~f~~-~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 211 IHPHEVILVIDGTIGQ--QAYNQALAFKE-ATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp HCCSEEEEEEEGGGGG--GHHHHHHHHHH-SCTTEEEEEECCSSCSS
T ss_pred hcCceEEEEEeCCCch--hHHHHHHHHHh-hCCCeEEEEECCCCccc
Confidence 3578999999998752 22223322222 33433344899999765
No 259
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=72.73 E-value=7.9 Score=27.71 Aligned_cols=44 Identities=14% Similarity=0.391 Sum_probs=34.2
Q ss_pred ccccCCCCeEEEe--cCCCCCCeEEEEEEeCCCcEEEEEEEecCccee
Q psy15224 446 KILYQLDELVRIK--DGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATP 491 (502)
Q Consensus 446 ~~~~~~G~~V~I~--~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~ 491 (502)
...|++|.+++.+ .+|. +.++|.+++...+++.|.++-....-.
T Consensus 10 ~~~F~vGmkLEa~d~~~p~--~~AtV~~v~~~~~~~~VhfdGw~~~~D 55 (69)
T 3sd4_A 10 GISFEVGAQLEARDRLKNW--YPAHIEDIDYEEGKVLIHFKRWNHRYD 55 (69)
T ss_dssp TCCCSTTCEEEEECTTSCE--EEEEEEEEETTTTEEEEEETTSCGGGC
T ss_pred CCCcCCCCEEEEEECCCCc--cccEEEEEeccCCEEEEEeCCCCCCCC
Confidence 4579999999996 6887 899999997667788777766554433
No 260
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=66.51 E-value=5.6 Score=37.45 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=36.3
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 51 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~ 51 (502)
+..||.+|+|+.+...-.....+.+..+...|.+.+=+++|++|.-.
T Consensus 222 ~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 222 GRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp TTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred HHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 35689999999987655566777788888888887666699998654
No 261
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=62.27 E-value=7.6 Score=31.81 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=28.5
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEE
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRV 481 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v 481 (502)
-+++|.-|.|..||.+|--+.|+++-. .+++.|
T Consensus 6 fvevGRVV~i~~Gr~aGk~avIV~iiD-~~rvLV 38 (134)
T 3iz5_N 6 FVEIGRVALVNYGKDYGRLVVIVDVVD-QNRALV 38 (134)
T ss_dssp SCCSSEEEECSCCSSSCCEEEEEEECS-SSEEEE
T ss_pred ccccCeEEEEeeCCCCCCEEEEEEEcC-CCeEEE
Confidence 468999999999999999999999875 457666
No 262
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=61.08 E-value=14 Score=30.41 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=31.8
Q ss_pred ccccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEe
Q psy15224 446 KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTI 485 (502)
Q Consensus 446 ~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~ 485 (502)
...+++|.-|.+..||++|-.+.|+++-. .+++.|.=+.
T Consensus 12 ~rfve~GrVV~i~~Gr~aGk~avIV~iiD-~~rVLVDGp~ 50 (138)
T 3izc_N 12 WRLVEVGRVVLIKKGQSAGKLAAIVEIID-QKKVLIDGPK 50 (138)
T ss_dssp CCCSSTTEEEECCSCSSSCCEEEEEEECS-SSEEEEECSS
T ss_pred hhhcccCeEEEEeeCCCCCCEEEEEEEec-CCEEEEEcCC
Confidence 34578999999999999999999999885 5588774443
No 263
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=59.95 E-value=8.1 Score=28.85 Aligned_cols=33 Identities=9% Similarity=0.033 Sum_probs=26.8
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEE
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRV 481 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v 481 (502)
.+++|.-|.+..|+++|-...|+++-.+ +++.|
T Consensus 3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~-~~vlV 35 (83)
T 3j21_5 3 AIDVGRIAVVIAGRRAGQKVVVVDIIDK-NFVLV 35 (83)
T ss_dssp CCCTTEEEECSSSSSSCCCEEEEEECSS-SCEEE
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEcCC-CEEEE
Confidence 3679999999999999999999997543 35544
No 264
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=58.77 E-value=16 Score=35.68 Aligned_cols=15 Identities=7% Similarity=-0.046 Sum_probs=13.2
Q ss_pred cccCCEEEEEEECCC
Q psy15224 5 AAQMDGAILVCSAAD 19 (502)
Q Consensus 5 ~~~~D~ailvVda~~ 19 (502)
+..||++++|+|+.+
T Consensus 97 ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 97 IREVAAIAHVLRCFP 111 (368)
T ss_dssp HHTCSEEEEEEECCC
T ss_pred HHhCCEEEEEEECCC
Confidence 467999999999986
No 265
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=57.40 E-value=12 Score=30.31 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=28.3
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEE
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRV 481 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v 481 (502)
..++|--|.|..||.+|--+.|+++-.+ +++.|
T Consensus 6 fvevGRVv~i~~G~~aGklavIVdIID~-nrvLV 38 (126)
T 4a18_F 6 FVQVGRVVYINYGADKGKLAVIVNIINQ-NRILI 38 (126)
T ss_dssp EEETTEEEEECSSTTTTEEEEEEEEETT-TEEEE
T ss_pred ceecceEEEEccCCccCCEEEEEEEecC-CeEEE
Confidence 4678999999999999999999999864 47666
No 266
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=57.28 E-value=13 Score=35.12 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=33.1
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 50 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~ 50 (502)
..+|.+++|+.+...-..+..+.+..+...+++.+=+++|++|..
T Consensus 235 ~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 235 RSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp GGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred HHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 457888888888777667777777777777776554457888864
No 267
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=55.40 E-value=7.7 Score=36.69 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=28.6
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~ 52 (502)
+..+|.++||+|+..| .++.+.+..... .++...+++||+|....
T Consensus 210 ~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 210 AIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTAK 254 (297)
T ss_dssp HHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCTT
T ss_pred HhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCcc
Confidence 4568999999999764 333334433332 46634445999998653
No 268
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=54.30 E-value=5.1 Score=36.21 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=34.4
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCC
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 48 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D 48 (502)
.++..||.++++++++..-...+.+.+.++..++++.+.+++|+.+
T Consensus 149 ~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 149 GTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp HHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred HHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 3457799999999876433344556667788889887777799998
No 269
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=54.09 E-value=18 Score=36.22 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=26.3
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHH-HhCCCeEEEEEEcCCCCCh
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~-~~~i~~iiv~iNK~D~~~~ 52 (502)
..|.++||+||..|- .....+.... ..++ ..+| +||+|....
T Consensus 211 ~pd~vlLVlDa~~gq--~a~~~a~~f~~~~~~-~gVI-lTKlD~~a~ 253 (433)
T 3kl4_A 211 KPDDVILVIDASIGQ--KAYDLASRFHQASPI-GSVI-ITKMDGTAK 253 (433)
T ss_dssp CCSEEEEEEEGGGGG--GGHHHHHHHHHHCSS-EEEE-EECGGGCSC
T ss_pred CCcceEEEEeCccch--HHHHHHHHHhcccCC-cEEE-Eeccccccc
Confidence 468999999998762 2223333333 3343 3455 899998764
No 270
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=53.53 E-value=12 Score=33.06 Aligned_cols=47 Identities=9% Similarity=-0.017 Sum_probs=32.8
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHh-CCCeEEEEEEcCCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQV-GVPYIVVFLNKADMVD 51 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~-~i~~iiv~iNK~D~~~ 51 (502)
++..||.+++++.++..-...+...+..+... +.+.. +++|++|...
T Consensus 87 ~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~-vv~N~~~~~~ 134 (209)
T 3cwq_A 87 LADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFR-ILLTIIPPYP 134 (209)
T ss_dssp HHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEE-EEECSBCCTT
T ss_pred HHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEE-EEEEecCCcc
Confidence 45678999999987654445556666777764 66744 4599999764
No 271
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=52.15 E-value=40 Score=22.99 Aligned_cols=51 Identities=14% Similarity=0.281 Sum_probs=37.4
Q ss_pred ccCCCCeEEEe---cCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEeC
Q psy15224 448 LYQLDELVRIK---DGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 502 (502)
Q Consensus 448 ~~~~G~~V~I~---~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~~ 502 (502)
.+++|+.+... +|- =+.++|.+++...+.+.|.+.-+|-. -+++.++|+++
T Consensus 3 ~~~~G~~c~A~~s~Dg~--wYrA~I~~i~~~~~~~~V~f~DYGn~--e~v~~~~Lr~~ 56 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGC--IYPATIASIDFKRETCVVVYTGYGNR--EEQNLSDLLSP 56 (59)
T ss_dssp CCCTTCEEEEECTTTSC--EEEEEEEEEETTTTEEEEEETTTTEE--EEEEGGGCBCT
T ss_pred cCCcCCEEEEEECCCCC--EEEEEEEEEcCCCCEEEEEEEcCCCE--EEEcHHHeeCC
Confidence 47889988776 343 38899999987667888888778843 45677777653
No 272
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=50.90 E-value=15 Score=28.29 Aligned_cols=32 Identities=13% Similarity=0.018 Sum_probs=26.2
Q ss_pred cCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEE
Q psy15224 449 YQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRV 481 (502)
Q Consensus 449 ~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v 481 (502)
+++|.-|.+..|+++|-...|+++-. .+++.|
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~iD-~~~vLV 35 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDIID-DNFVLV 35 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEECS-SSCEEE
T ss_pred cccCEEEEEeecCCCCCEEEEEEEeC-CCEEEE
Confidence 67999999999999999999999853 334443
No 273
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=49.89 E-value=9 Score=35.05 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=35.3
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCCh
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~~ 52 (502)
.+..+|.+|+++.+...-...+.+.+..+...+.+.+-+++|++|....
T Consensus 129 ~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~ 177 (263)
T 1hyq_A 129 AIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGI 177 (263)
T ss_dssp HHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTH
T ss_pred HHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcccc
Confidence 4567899999998764433455666777777787777677999997553
No 274
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=49.43 E-value=10 Score=35.23 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=31.2
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 51 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~ 51 (502)
..+|.+++|+.+...-..+..+.+..+...+.+.+=+++|++|.-.
T Consensus 213 ~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 213 KFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred HHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 3578888888876655566666677777777775545588888643
No 275
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=48.62 E-value=6.9 Score=35.12 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=34.9
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 51 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~ 51 (502)
.+..+|.+++++++...-...+.+.+..+...+.+.+-+++|+.|...
T Consensus 130 ~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 130 AMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp HHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred HHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 456789999999876543345566677777778777767799999654
No 276
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=48.07 E-value=30 Score=28.54 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=24.7
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCC
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYE 475 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~ 475 (502)
-+++|.-|.|+.|+++|-.+.|++.-.+
T Consensus 4 f~kpGrVvivl~Gr~aGkkaVIvk~iD~ 31 (144)
T 4a18_N 4 FLKYGRVVILLQGRFAGKKAVIVKSSED 31 (144)
T ss_dssp CCCTTEEEEECSSTTTTCEEEEEEEESS
T ss_pred cccCCeEEEEecCCcCCCEEEEEEecCC
Confidence 3679999999999999999999987754
No 277
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=47.72 E-value=17 Score=31.57 Aligned_cols=46 Identities=7% Similarity=-0.004 Sum_probs=33.9
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhC-----CCeEEEEEEcCCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVG-----VPYIVVFLNKADMVD 51 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~-----i~~iiv~iNK~D~~~ 51 (502)
++..+|.+++++.++..- ..+...+..+...+ ++. -+++|++|.-.
T Consensus 94 ~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~~~~ 144 (206)
T 4dzz_A 94 AVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEA-RFLITRKIEMA 144 (206)
T ss_dssp HHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEE-EEEECSBCTTE
T ss_pred HHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcE-EEEEeccCCCc
Confidence 456799999999988766 77777778777654 454 44599999643
No 278
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=47.40 E-value=92 Score=23.75 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=40.4
Q ss_pred ccCCCCeEEEecCC----------CCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEe
Q psy15224 448 LYQLDELVRIKDGP----------FTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 501 (502)
Q Consensus 448 ~~~~G~~V~I~~GP----------f~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~ 501 (502)
.|++||.|-|.--| |.|.+|.|..+..+ -+.|.++--+....+.+-.|-|++
T Consensus 33 ~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~--AvgV~Vnk~vk~Kri~vr~eHik~ 94 (96)
T 1vq8_Q 33 EFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGD--AYKVDIVDGGKEKTIIVTAAHLRR 94 (96)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETT--EEEEEEEETTEEEEEEECGGGEEE
T ss_pred HcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCC--EEEEEEeecCCCcEEEeCHhHccc
Confidence 48999999988433 68889999988854 677777777766778887777765
No 279
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=45.90 E-value=25 Score=31.43 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=23.5
Q ss_pred ccccCCCCeEEEecCC----------CCCCeEEEEEEe
Q psy15224 446 KILYQLDELVRIKDGP----------FTDFSGNIEEVN 473 (502)
Q Consensus 446 ~~~~~~G~~V~I~~GP----------f~g~~g~v~~~~ 473 (502)
...|++||+|+|.+-+ ..|..|+|+++.
T Consensus 128 ~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 165 (219)
T 3qyh_B 128 RARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDH 165 (219)
T ss_dssp CCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEE
T ss_pred CCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEe
Confidence 4579999999998765 688999998875
No 280
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=45.85 E-value=72 Score=22.09 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=39.8
Q ss_pred cccCCCCeEEEe-cCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEeC
Q psy15224 447 ILYQLDELVRIK-DGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 502 (502)
Q Consensus 447 ~~~~~G~~V~I~-~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~~ 502 (502)
..+++||.+... +.-=.=+.++|.+++..++.+.|.+.-+|.. -.++.++|+++
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~--e~V~~~~Lrpl 61 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNA--EVTPLLNLKPV 61 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEE--EEEEGGGEECC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCE--EEEeHHHcEeC
Confidence 468899999877 2222457899999997667888888888753 34677887764
No 281
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.16 E-value=1.1e+02 Score=23.39 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=40.2
Q ss_pred ccCCCCeEEEecCC----------CCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEe
Q psy15224 448 LYQLDELVRIKDGP----------FTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 501 (502)
Q Consensus 448 ~~~~G~~V~I~~GP----------f~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~ 501 (502)
.|++||.|-|.-=| |-|.+|.|..+..+ -+.|.++.-|....+.+-.|-|++
T Consensus 34 ~yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~--Avgv~Vn~~g~~Kri~vrieHik~ 95 (97)
T 3j21_R 34 EFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGE--AYIVEIKDGSKVKTLFIHPVHLRP 95 (97)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETT--EEEEEEEETTEEEEEEECGGGEEE
T ss_pred HhcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCc--EEEEEEEeCCcceEEEECHHHccc
Confidence 48999999987433 68999999988864 467777766677778888887765
No 282
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=42.94 E-value=28 Score=31.30 Aligned_cols=40 Identities=18% Similarity=0.048 Sum_probs=30.5
Q ss_pred EEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC
Q psy15224 11 AILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 50 (502)
Q Consensus 11 ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~ 50 (502)
+|||+++..|-..++...+..+...+++..=+++|+++..
T Consensus 143 viLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 143 VLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred EEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 7999999876556666666777788998665669999854
No 283
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=42.46 E-value=23 Score=32.41 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=30.7
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCC
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM 49 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~ 49 (502)
.+|.+++++.+...-...+.+.+..++..+++.+-+++|+.|.
T Consensus 152 ~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 152 KPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 5788888888776554556666777777788865345898873
No 284
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=40.13 E-value=79 Score=28.58 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=27.5
Q ss_pred EEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCCC
Q psy15224 11 AILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 51 (502)
Q Consensus 11 ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~~ 51 (502)
+|||+++..|...++...+..++..|++ .=+++|+++-..
T Consensus 164 VILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~ 203 (242)
T 3qxc_A 164 MLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNNT 203 (242)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTCC
T ss_pred EEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCcc
Confidence 7888888777445555556666677888 555588887554
No 285
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=40.07 E-value=76 Score=21.65 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=34.5
Q ss_pred ccCCCCeEEEe--cCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEe
Q psy15224 448 LYQLDELVRIK--DGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 501 (502)
Q Consensus 448 ~~~~G~~V~I~--~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~ 501 (502)
.|.+|+.|-+. +|-| +-|+|++++..+++..|.+ .-....-+...+|.+
T Consensus 3 ~f~~GedVLarwsDG~f--YlGtI~~V~~~~~~clV~F---~D~s~~W~~~kdi~~ 53 (58)
T 4hcz_A 3 RLWEGQDVLARWTDGLL--YLGTIKKVDSAREVCLVQF---EDDSQFLVLWKDISP 53 (58)
T ss_dssp SCCTTCEEEEECTTSCE--EEEEEEEEETTTTEEEEEE---TTSCEEEEEGGGEEE
T ss_pred ccccCCEEEEEecCCCE--EeEEEEEEecCCCEEEEEE---cCCCeEEEEhHHccc
Confidence 58899999764 6644 6799999998877777654 333445666666654
No 286
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=39.48 E-value=37 Score=32.98 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=13.2
Q ss_pred cccCCEEEEEEECCC
Q psy15224 5 AAQMDGAILVCSAAD 19 (502)
Q Consensus 5 ~~~~D~ailvVda~~ 19 (502)
+..+|++++|+|+.+
T Consensus 94 ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 94 IRETDAIGHVVRCFE 108 (363)
T ss_dssp HHTCSEEEEEEECSC
T ss_pred HHhcCeEEEEEecCC
Confidence 467999999999986
No 287
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=39.26 E-value=64 Score=23.32 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=29.2
Q ss_pred ccccCCCCeEEEe--cCCCCCCeEEEEEEeCCCcEEEEEE
Q psy15224 446 KILYQLDELVRIK--DGPFTDFSGNIEEVNYEKSRVRVSV 483 (502)
Q Consensus 446 ~~~~~~G~~V~I~--~GPf~g~~g~v~~~~~~~~rv~v~v 483 (502)
...|..|+.|-+. +|=| +-|+|++++..+++..|.+
T Consensus 24 ~~~f~eGeDVLarwsDGlf--YLGTI~kV~~~~e~ClV~F 61 (79)
T 2m0o_A 24 RPRLWEGQDVLARWTDGLL--YLGTIKKVDSAREVCLVQF 61 (79)
T ss_dssp CCCCCTTCEEEBCCTTSCC--CEEEEEEEETTTTEEEEEE
T ss_pred cceeccCCEEEEEecCCCE--EeEEEEEeccCCCEEEEEE
Confidence 3579999999874 6755 7899999999888877764
No 288
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=38.16 E-value=67 Score=21.27 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=35.0
Q ss_pred cCCCCeEEEec-CCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEeC
Q psy15224 449 YQLDELVRIKD-GPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 502 (502)
Q Consensus 449 ~~~G~~V~I~~-GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~~ 502 (502)
+++|+.+...- .-=.=+.|+|.+++..++.+.|...-+|.. -+++.++|++|
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~--e~v~~~~lrpi 54 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNY--EEVLLSNIKPI 54 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCE--EEEEGGGEECC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCe--EEEeHHHEEEC
Confidence 57788877662 111347899999986666888888778754 45778888875
No 289
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=37.84 E-value=45 Score=29.98 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=23.3
Q ss_pred ccccCCCCeEEEecCC----------CCCCeEEEEEEe
Q psy15224 446 KILYQLDELVRIKDGP----------FTDFSGNIEEVN 473 (502)
Q Consensus 446 ~~~~~~G~~V~I~~GP----------f~g~~g~v~~~~ 473 (502)
...|++||+|+|.+-+ ..|..|+|+++.
T Consensus 139 ~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 176 (229)
T 3hht_B 139 SPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVY 176 (229)
T ss_dssp CCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEE
T ss_pred CCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEe
Confidence 3469999999998765 688899998875
No 290
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=37.38 E-value=14 Score=33.05 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=33.7
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhC--CCeEEEEEEcCCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVG--VPYIVVFLNKADMVD 51 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~--i~~iiv~iNK~D~~~ 51 (502)
.+..||.+++++.+...-...+.+.+..+...+ .+.+-+++|+.|.-.
T Consensus 137 ~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 137 VLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp HGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred HHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 466799999999876443355566777777776 344556699999654
No 291
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=37.35 E-value=13 Score=36.41 Aligned_cols=45 Identities=9% Similarity=-0.027 Sum_probs=27.1
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHh-----CCCeEEEEEEcCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQV-----GVPYIVVFLNKADMV 50 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~-----~i~~iiv~iNK~D~~ 50 (502)
.+..||++++|||+.+... +.......+... ..|.+++ +||+|..
T Consensus 146 ~i~~ad~il~vvD~~~p~~-~~~~i~~EL~~~~~~l~~k~~~i~-~nK~d~~ 195 (376)
T 4a9a_A 146 VARTCNLLFIILDVNKPLH-HKQIIEKELEGVGIRLNKTPPDIL-IKKKEKG 195 (376)
T ss_dssp HHHHCSEEEEEEETTSHHH-HHHHHHHHHHHTTEEETCCCCCEE-EEECSSS
T ss_pred HHHhcCccccccccCccHH-HHHHHHHHHHHhhHhhccCChhhh-hhHhhhh
Confidence 4567999999999986321 111111233333 3455555 9999973
No 292
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=37.34 E-value=69 Score=28.72 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=23.3
Q ss_pred ccccCCCCeEEEecCC----------CCCCeEEEEEEe
Q psy15224 446 KILYQLDELVRIKDGP----------FTDFSGNIEEVN 473 (502)
Q Consensus 446 ~~~~~~G~~V~I~~GP----------f~g~~g~v~~~~ 473 (502)
...|++||+|+|.+-+ ..|..|+|+++.
T Consensus 136 ~~~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~ 173 (226)
T 1ugp_B 136 PPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHH 173 (226)
T ss_dssp CCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEE
T ss_pred CCcCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEe
Confidence 4569999999999765 688999999865
No 293
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=36.78 E-value=39 Score=27.20 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=22.9
Q ss_pred cccCCCCeEEEecCC----------CCCCeEEEEEEe
Q psy15224 447 ILYQLDELVRIKDGP----------FTDFSGNIEEVN 473 (502)
Q Consensus 447 ~~~~~G~~V~I~~GP----------f~g~~g~v~~~~ 473 (502)
..|++||+|+|.+-+ ..|..|+|.++.
T Consensus 35 prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~ 71 (126)
T 2zzd_A 35 SKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLV 71 (126)
T ss_dssp CSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEE
T ss_pred CccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEe
Confidence 469999999999765 688999998865
No 294
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=36.12 E-value=80 Score=26.70 Aligned_cols=49 Identities=12% Similarity=0.253 Sum_probs=35.4
Q ss_pred CCCeEEEe-cCCCCC---CeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEe
Q psy15224 451 LDELVRIK-DGPFTD---FSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 501 (502)
Q Consensus 451 ~G~~V~I~-~GPf~g---~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~ 501 (502)
.|..|+|. .-|..| |+|.+..++. ..+++.++.-++...+++++++|.+
T Consensus 103 ~G~~V~V~l~~~~~g~k~~~G~L~~~~~--~~v~l~~~~k~~~~~~~i~~~~I~k 155 (164)
T 1ib8_A 103 VGKYIHVGLYQAIDKQKVFEGTLLAFEE--DELTMEYMDKTRKKTVQIPYSLVSK 155 (164)
T ss_dssp CSEEEEEECSSCSSSCSEEEEEEEEEET--TEEEEEEECSSCEEEEEECSSCCSS
T ss_pred CCcEEEEEEecccCCceEEEEEEEEEeC--CEEEEEEecccCCeEEEEEHHHCcE
Confidence 58889887 455555 7899999985 3577766543344678899998865
No 295
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=34.13 E-value=37 Score=31.52 Aligned_cols=48 Identities=13% Similarity=0.072 Sum_probs=31.6
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHh------CCCeEEEEEEcCCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQV------GVPYIVVFLNKADMVD 51 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~------~i~~iiv~iNK~D~~~ 51 (502)
++..||.+++++.+...-...+...+..+... +++.+-+++|+.|.-.
T Consensus 173 ~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 173 AIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp HHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred HHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 34568999999988765444455555555442 6665545599999755
No 296
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=32.67 E-value=1.4e+02 Score=24.97 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=40.2
Q ss_pred ccCCCCeEEEecCC----------CCCCeEEEEEEeCCCcEEEEEEEecCc--ceeEEeecCceEe
Q psy15224 448 LYQLDELVRIKDGP----------FTDFSGNIEEVNYEKSRVRVSVTIFGR--ATPVELEFNQVEK 501 (502)
Q Consensus 448 ~~~~G~~V~I~~GP----------f~g~~g~v~~~~~~~~rv~v~v~~~g~--~~~v~~~~~~v~~ 501 (502)
.|+.||.|-|.-=| |.|.+|.|..+..+.--+.|....-|+ ...+.+-.+-|+.
T Consensus 33 ~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v~gkil~KrI~VriEHik~ 98 (157)
T 4a17_P 33 TYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVHRIVNGRYIEKRLHVKIEHVRP 98 (157)
T ss_dssp CCCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEGGGEEE
T ss_pred HhcCCCEEEEeccCceecCCCCccccCCcccEeeecCeEEEEEEEEeECCEeeeeEEEEeHHHccc
Confidence 48999999987433 688999999888665456666667777 5667777777654
No 297
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=31.53 E-value=45 Score=32.13 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=34.4
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCC
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 48 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D 48 (502)
.+|.+++|+.+..-....+.+.+..+...|++..-+++|++.
T Consensus 234 ~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 678899999876544466778888889999998877799998
No 298
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=30.63 E-value=28 Score=29.48 Aligned_cols=40 Identities=18% Similarity=0.028 Sum_probs=28.8
Q ss_pred cccccCCEEEEEEECCCC--CCcchHHHHHHHHHhCCCeEEE
Q psy15224 3 TGAAQMDGAILVCSAADG--PMPQTREHILLARQVGVPYIVV 42 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g--~~~qt~e~l~~~~~~~i~~iiv 42 (502)
.++..||++|.++|.-.| ..+.|-.=+..+.++|+|.+++
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l 104 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTF 104 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEE
Confidence 457789999999996444 4455655567788999995544
No 299
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=30.60 E-value=1.7e+02 Score=24.06 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=32.7
Q ss_pred cccCCCCeEEEe----cCC---CCCCeEEEEEEeCCCc--EEEEEEEecCcceeEEeec
Q psy15224 447 ILYQLDELVRIK----DGP---FTDFSGNIEEVNYEKS--RVRVSVTIFGRATPVELEF 496 (502)
Q Consensus 447 ~~~~~G~~V~I~----~GP---f~g~~g~v~~~~~~~~--rv~v~v~~~g~~~~v~~~~ 496 (502)
..|.+||.|+|. +|. .+-|+|.++...+..- .++|.=-..|.-+...+++
T Consensus 20 P~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fpl 78 (146)
T 3v2d_T 20 PEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPL 78 (146)
T ss_dssp CCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEET
T ss_pred CCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEec
Confidence 469999999865 565 3458999999876543 3455444556555555554
No 300
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=30.00 E-value=47 Score=28.23 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=30.5
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEE
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVV 42 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv 42 (502)
.++..||++|.++|. ..+.+.|-.-+..+.++|+|.+.+
T Consensus 77 ~~i~~aD~vVA~ldg-~~~D~GTa~EiGyA~algKPVv~l 115 (167)
T 1s2d_A 77 TGISNATCGVFLYDM-DQLDDGSAFXIGFMRAMHKPVILV 115 (167)
T ss_dssp HHHHHCSEEEEEEES-SSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHhCCEEEEECCC-CCCCCCceeehhhHhhCCCeEEEE
Confidence 356789999999996 456777877788899999995443
No 301
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=28.84 E-value=58 Score=29.37 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=28.2
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHh------CCCeEEEEEEcCCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQV------GVPYIVVFLNKADMVD 51 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~------~i~~iiv~iNK~D~~~ 51 (502)
++..||.+++++.+...-...+...+..+..+ +++.+-+++|+.|...
T Consensus 130 ~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 130 ALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp HHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTC
T ss_pred HHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCc
Confidence 34568999999988643223333344444332 4554324599998754
No 302
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=28.77 E-value=98 Score=25.97 Aligned_cols=54 Identities=17% Similarity=0.375 Sum_probs=37.2
Q ss_pred ccCCCCeEEEecCC----------CCCCeEEEEEEeCCCcEEEEEEEecCc--ceeEEeecCceEe
Q psy15224 448 LYQLDELVRIKDGP----------FTDFSGNIEEVNYEKSRVRVSVTIFGR--ATPVELEFNQVEK 501 (502)
Q Consensus 448 ~~~~G~~V~I~~GP----------f~g~~g~v~~~~~~~~rv~v~v~~~g~--~~~v~~~~~~v~~ 501 (502)
.|++||.|-|.--| |.|.+|.|..+..+.-.+.|....-|+ ...+.+-.+-|++
T Consensus 33 ~yk~GD~VdIk~~~svqKGmPhk~yHGkTGrV~~v~~~AvgViVnk~v~~kil~Kri~vr~eHik~ 98 (160)
T 2zkr_q 33 IYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKH 98 (160)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEECCCCSSSEEEEEEECCSSCCSCEEEEECGGGEEE
T ss_pred HcCCCCEEEEEecCCcccCCCCcccCCCCeEEEeEcCCEEEEEEEEeeCCeeeeeEEEcCHHHcCc
Confidence 48999999887433 688999998877655334455555666 5567666666654
No 303
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=28.16 E-value=1.8e+02 Score=27.66 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=34.8
Q ss_pred CCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC
Q psy15224 8 MDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 50 (502)
Q Consensus 8 ~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~ 50 (502)
.|.+++|+-+..-....+++.+..++..|++..=+++|++...
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~ 279 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPE 279 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccc
Confidence 4678888877665556778888999999999877789999865
No 304
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=27.75 E-value=54 Score=29.72 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=30.1
Q ss_pred ccccCCEEEEEEECCCCCCcchHHHHHHHHHhC--CCeEEEEEEcCCCC
Q psy15224 4 GAAQMDGAILVCSAADGPMPQTREHILLARQVG--VPYIVVFLNKADMV 50 (502)
Q Consensus 4 g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~--i~~iiv~iNK~D~~ 50 (502)
++..||.+++++.++..-...+...+..+...+ .+.. +++|+.+..
T Consensus 163 ~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~-vv~N~~~~~ 210 (267)
T 3k9g_A 163 ALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIF-LIITRFKKN 210 (267)
T ss_dssp HHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEE-EEEEEECTT
T ss_pred HHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEE-EEEecccCc
Confidence 456799999999986533334455566666664 4544 459999543
No 305
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=26.90 E-value=3.5e+02 Score=26.15 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=25.6
Q ss_pred EEEEeCceE-ecccCCeEEEEeCCeEEEEEEEee
Q psy15224 270 ITVRLINPI-AMEEGLRFAIREGVQQFIQDNLLT 302 (502)
Q Consensus 270 v~~~~~~pi-~~~~~~r~ilr~~~~~ig~G~i~~ 302 (502)
+++.|+.|. .+-+|+-.+|=++.+.+|+|.|..
T Consensus 341 ~~v~~~~p~~~v~pGQ~~v~Y~~~~~lggg~i~~ 374 (380)
T 2der_A 341 IEVIFDEPVAAVTPGQSAVFYNGEVCLGGGIIEQ 374 (380)
T ss_dssp EEEEEEEEESCCCTTSEEEEEETTEEEEEEEEEE
T ss_pred EEEEECCCCcCcCCCceEEEEeCCEEEEEEEEec
Confidence 556677665 345789989988889999999974
No 306
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=26.79 E-value=69 Score=28.95 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=26.6
Q ss_pred cCCEEEEEEECCCCCCcchHHHHHHHHHh----CCCeEEEEEEcCCCC
Q psy15224 7 QMDGAILVCSAADGPMPQTREHILLARQV----GVPYIVVFLNKADMV 50 (502)
Q Consensus 7 ~~D~ailvVda~~g~~~qt~e~l~~~~~~----~i~~iiv~iNK~D~~ 50 (502)
.||.+++++.++..-...+.+.+..+... +++.+-+++|+.+..
T Consensus 140 ~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~ 187 (269)
T 1cp2_A 140 KAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA 187 (269)
T ss_dssp SCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS
T ss_pred hCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc
Confidence 69999999987542222333344444443 556555569998753
No 307
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=26.67 E-value=2.2e+02 Score=22.79 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=40.3
Q ss_pred ccccCCCCeEEEecCC----CCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEeC
Q psy15224 446 KILYQLDELVRIKDGP----FTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 502 (502)
Q Consensus 446 ~~~~~~G~~V~I~~GP----f~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~~ 502 (502)
..-+.+|=.|+|++=. |-+..|.|.++.. ++...|.+.--| ..+.++.++||.+
T Consensus 12 ~~Wl~~~I~Vrii~k~~~~g~y~~KgvV~~V~~-~~~c~V~l~~~g--~~v~v~q~~LETV 69 (127)
T 2ckk_A 12 DYWLQPEIIVKIITKKLGEKYHKKKAIVKEVID-KYTAVVKMIDSG--DKLKLDQTHLETV 69 (127)
T ss_dssp SCCCCTTBEEEECCSTTCGGGTTCEEEEEEEET-TTEEEEEETTTC--CEEEEEGGGEEEC
T ss_pred CCcccCCeEEEEEEccCCCcccCceEEEEEecC-CCeEEEEECCCC--CEEEEchHHcEEe
Confidence 3468899999999633 7789999999953 567777774444 4468899998864
No 308
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U 3o58_T 3o5h_T 3u5e_T 3u5i_T 4b6a_T
Probab=25.84 E-value=1.5e+02 Score=24.93 Aligned_cols=54 Identities=17% Similarity=0.345 Sum_probs=39.5
Q ss_pred ccCCCCeEEEecCC----------CCCCeEEEEEEeCCCcEEEEEEEecCc--ceeEEeecCceEe
Q psy15224 448 LYQLDELVRIKDGP----------FTDFSGNIEEVNYEKSRVRVSVTIFGR--ATPVELEFNQVEK 501 (502)
Q Consensus 448 ~~~~G~~V~I~~GP----------f~g~~g~v~~~~~~~~rv~v~v~~~g~--~~~v~~~~~~v~~ 501 (502)
.|+.||.|-|.-=| |.|.+|.|..+..+.--+.|....-|+ ...+.+-.+-|+.
T Consensus 33 ~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v~gkil~KrI~VriEHik~ 98 (160)
T 3izc_U 33 VYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKH 98 (160)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEECSSSEEEEECCCSSSSCCCEEEEECTTSEEE
T ss_pred HhcCCCEEEEeccCccCCCCCCcccCCCCeEEEeeCCcEEEEEEEEEECCEeeeeEEEEeHHHccc
Confidence 48999999987433 689999999988766445555556677 5677777777764
No 309
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=25.78 E-value=1e+02 Score=22.24 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=35.3
Q ss_pred ccCCCCeEEEecCCC---CCCeEEEEEEeCCCcEEEEEEEe--cCcceeEEeecCceE
Q psy15224 448 LYQLDELVRIKDGPF---TDFSGNIEEVNYEKSRVRVSVTI--FGRATPVELEFNQVE 500 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf---~g~~g~v~~~~~~~~rv~v~v~~--~g~~~~v~~~~~~v~ 500 (502)
.|.+|++|.+..|+= .=++++|++++..++...-.|-. +++...=-++.+.|.
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr~DEWV~~~ri~ 62 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRII 62 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSCCSSCEEEEGGGEE
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcCCCceEecChhhcc
Confidence 589999999998861 22789998888766655444544 445444446666554
No 310
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=25.77 E-value=1.7e+02 Score=20.39 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=42.8
Q ss_pred CccccCCCCeEEEe-cCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEeC
Q psy15224 445 PKILYQLDELVRIK-DGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 502 (502)
Q Consensus 445 ~~~~~~~G~~V~I~-~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~~ 502 (502)
+...|.+||.|.-. .|-=.=++++|..++.......|.+.- .+..++...+|+++
T Consensus 6 p~~~~~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKd---gT~e~L~~kDIkp~ 61 (66)
T 2l8d_A 6 PNRKYADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKD---GTELALKESDIRLQ 61 (66)
T ss_dssp SSSSSCSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETT---SCEEEEEGGGEECS
T ss_pred CceEeecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecC---CCEEeechhccccc
Confidence 44579999999765 676667889999999877777777665 46778888888764
No 311
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=25.63 E-value=87 Score=28.73 Aligned_cols=44 Identities=14% Similarity=0.020 Sum_probs=25.6
Q ss_pred ccCCEEEEEEECCCCCCcchHHHHHHHHH----hCCCeEEEEEEcCCC
Q psy15224 6 AQMDGAILVCSAADGPMPQTREHILLARQ----VGVPYIVVFLNKADM 49 (502)
Q Consensus 6 ~~~D~ailvVda~~g~~~qt~e~l~~~~~----~~i~~iiv~iNK~D~ 49 (502)
..||.+++++.+...-...+...+..+.. .+++.+-+++|+.+.
T Consensus 142 ~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 142 NKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred hhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 46899999887653222223333444443 266655455899874
No 312
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=25.21 E-value=2.1e+02 Score=28.74 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=41.7
Q ss_pred chHHHHHHHHHhCCCeEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCeEEEccccccccCCCCCCCcccHHHH
Q psy15224 24 QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSL 103 (502)
Q Consensus 24 qt~e~l~~~~~~~i~~iiv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~iSa~~g~~~~~~w~~~~~i~~L 103 (502)
....|++-++.+|+|. +|+||+...-.. +.+ +.+.++.++.|. ++.....+. . .|++..+|
T Consensus 348 NL~kHIen~~~fGvpv-VVaiN~F~tDT~-aEi----~~v~~~~~~~G~-----~~~~s~~wa-~-------GG~G~~~L 408 (543)
T 3do6_A 348 NLRVHVENLRKFNLPV-VVALNRFSTDTE-KEI----AYVVKECEKLGV-----RVAVSEVFK-K-------GSEGGVEL 408 (543)
T ss_dssp HHHHHHHHHHHTTCCE-EEEEECCTTCCH-HHH----HHHHHHHHTTTC-----EEEEECHHH-H-------GGGGSHHH
T ss_pred HHHHHHHHHHHcCCCe-EEEEeCCCCCCH-HHH----HHHHHHHHHcCC-----CEEEechhh-c-------cchhHHHH
Confidence 3558999999999995 556999887554 222 345566666554 343333221 1 12366677
Q ss_pred HHHHhhcC
Q psy15224 104 SKALDTYI 111 (502)
Q Consensus 104 l~~l~~~~ 111 (502)
-+.+.+.+
T Consensus 409 A~~Vv~~~ 416 (543)
T 3do6_A 409 AKAVAEAA 416 (543)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 77766544
No 313
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=24.72 E-value=72 Score=31.73 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=25.9
Q ss_pred cccCCEEEEEEECCCCCCcchHHHHHHHH-HhCCCeEEEEEEcCCCCCh
Q psy15224 5 AAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 5 ~~~~D~ailvVda~~g~~~qt~e~l~~~~-~~~i~~iiv~iNK~D~~~~ 52 (502)
+..+|.++||+||..|. .....+.... .+++.. +| +||+|....
T Consensus 211 ~~~p~~vllVvda~~g~--~~~~~~~~f~~~l~i~g-vV-lnK~D~~~~ 255 (433)
T 2xxa_A 211 SINPVETLFVVDAMTGQ--DAANTAKAFNEALPLTG-VV-LTKVDGDAR 255 (433)
T ss_dssp HSCCSEEEEEEETTBCT--THHHHHHHHHHHSCCCC-EE-EECTTSSSC
T ss_pred hhcCcceeEEeecchhH--HHHHHHHHHhccCCCeE-EE-EecCCCCcc
Confidence 34688999999998762 1222222222 344332 34 899998543
No 314
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=24.67 E-value=55 Score=27.68 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=29.3
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEE
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVV 42 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv 42 (502)
.++..||++|.++|.. .+...|---+..+.++|+|.+.+
T Consensus 65 ~~i~~aD~viA~ldg~-~~D~Gt~~EiG~A~a~gkPVi~~ 103 (162)
T 3ehd_A 65 ENVLASDLLVALLDGP-TIDAGVASEIGVAYAKGIPVVAL 103 (162)
T ss_dssp HHHHTCSEEEEECCSS-SCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHCCEEEEECCCC-CCCCCHHHHHHHHHHCCCEEEEE
Confidence 3567899999999743 24566777778899999995554
No 315
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=23.84 E-value=2.1e+02 Score=20.62 Aligned_cols=51 Identities=12% Similarity=0.222 Sum_probs=36.7
Q ss_pred ccCCCCeEEEe---cCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEeC
Q psy15224 448 LYQLDELVRIK---DGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 502 (502)
Q Consensus 448 ~~~~G~~V~I~---~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~~ 502 (502)
.+++|+.+... +|- =+.++|.+++...+.+.|.+--+|..- +++.++|+++
T Consensus 9 ~~~~G~~c~A~~s~Dg~--wYRA~I~~i~~~~~~~~V~fiDYGN~e--~V~~~~Lr~l 62 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNK--FYRAEVEALHSSGMTAVVKFTDYGNYE--EVLLSNIKPV 62 (78)
T ss_dssp CCCTTCEEEEECTTTCC--EEEEEEEEECSSSSEEEEEETTTTEEE--EEEGGGEEEC
T ss_pred CCCcCCEEEEEECCCCC--EEEEEEEEEeCCCCEEEEEEEcCCCeE--EEcHHHeEeC
Confidence 57899988765 343 378999999865578888887777543 4566777654
No 316
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=23.45 E-value=48 Score=27.76 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=28.2
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEE
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVV 42 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv 42 (502)
..+..||+++..+| .+...|---+..+.++|+|.+.+
T Consensus 64 ~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~algkPV~~l 100 (152)
T 4fyk_A 64 NWLQQADVVVAEVT---QPSLGVGYELGRAVALGKPILCL 100 (152)
T ss_dssp HHHHHCSEEEEECS---SCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHCCEEEEeCC---CCCCCHHHHHHHHHHcCCeEEEE
Confidence 34667999988777 56677877788899999995544
No 317
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=22.53 E-value=40 Score=31.44 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=29.5
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHH----hCCCeEEEEEEcCCC
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQ----VGVPYIVVFLNKADM 49 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~----~~i~~iiv~iNK~D~ 49 (502)
..+..||.+++++.++..-...+.+.+..+.. .+++.+-+++|+.+.
T Consensus 175 ~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 175 APLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp GGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred HHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 45677999999998754322344455566654 344544355999994
No 318
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=22.53 E-value=1e+02 Score=27.34 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=22.1
Q ss_pred ccccCCCCeEEEecCC----------CCCCeEEE-EEEe
Q psy15224 446 KILYQLDELVRIKDGP----------FTDFSGNI-EEVN 473 (502)
Q Consensus 446 ~~~~~~G~~V~I~~GP----------f~g~~g~v-~~~~ 473 (502)
...|++||+|+|.+-+ ..|..|+| .++.
T Consensus 120 ~~~F~vGd~Vrv~~~~~~gHtR~P~YvRGk~G~I~~~~~ 158 (212)
T 3a8g_B 120 TTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTT 158 (212)
T ss_dssp CCCCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEECS
T ss_pred CcccCCCCeEEEecCCCCCcccccHHHCCCeEEEEEEec
Confidence 3469999999999765 58888999 5543
No 319
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=21.87 E-value=50 Score=27.92 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=30.5
Q ss_pred cccccCCEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcC
Q psy15224 3 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKA 47 (502)
Q Consensus 3 ~g~~~~D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~ 47 (502)
..+..||+++..+| .....|..=+..+.++|+|.+++ -++-
T Consensus 73 ~~i~~aD~vva~~~---~~d~Gt~~EiGyA~algKPVi~l-~~~~ 113 (165)
T 2khz_A 73 NWLQQADVVVAEVT---QPSLGVGYELGRAVALGKPILCL-FRPQ 113 (165)
T ss_dssp HHHHHCSEEEEECS---SCCHHHHHHHHHHHHTCSSEEEE-ECTT
T ss_pred HHHHhCCEEEEECC---CCCCCHHHHHHHHHHCCCEEEEE-EcCC
Confidence 34678999999886 56677777778899999996555 4444
No 320
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=21.43 E-value=1.4e+02 Score=27.18 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=36.0
Q ss_pred CCcceeCCHHHHHHHHHHHhcCCCCCCCccccCCCCeEEEecCCCCCCeEEEEEEeCCC
Q psy15224 418 SNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEK 476 (502)
Q Consensus 418 ~~~p~~v~~~ei~~~~~~~~~~~~~~~~~~~~~~G~~V~I~~GPf~g~~g~v~~~~~~~ 476 (502)
.+..+.+++++..-+.+. ..+++||.|.+.+|-=.-+.++|.+++++.
T Consensus 14 ~~~~i~L~~~~~~Hl~~V-----------LR~~~Gd~v~l~dg~g~~~~a~I~~i~~~~ 61 (251)
T 4e8b_A 14 SHSHIALCEDAANHIGRV-----------LRMGPGQALQLFDGSNQVFDAEITSASKKS 61 (251)
T ss_dssp TTCEEECCHHHHHHHHTT-----------SCCCSCCEEEEECSSSEEEEEEEEEECSSC
T ss_pred CCCEEEeCHHHHHHHHHh-----------CcCCCCCEEEEEeCCCcEEEEEEEEeecce
Confidence 356778999887655432 257899999999997666789999988543
No 321
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=21.42 E-value=1.6e+02 Score=26.59 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=28.7
Q ss_pred EEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCC
Q psy15224 10 GAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 48 (502)
Q Consensus 10 ~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D 48 (502)
-+|||+|+..|-..++..-+..+...+++..=+++||+.
T Consensus 159 pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 159 AALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp EEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 378999988765555665666677788887666799985
No 322
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=21.04 E-value=2.2e+02 Score=19.99 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=37.0
Q ss_pred ccCCCCeEEEecCCCCCCeEEEEEEeCCCcEEEEEEEecCcceeEEeecCceEe
Q psy15224 448 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 501 (502)
Q Consensus 448 ~~~~G~~V~I~~GPf~g~~g~v~~~~~~~~rv~v~v~~~g~~~~v~~~~~~v~~ 501 (502)
.|++||+|...=|-=.=+.|+|.+++.. +..+|.+.- | ..-++....|++
T Consensus 6 ~~~vGd~vmArW~D~~yYpA~I~si~~~-~~Y~V~F~d-G--~~etvk~~~ikp 55 (67)
T 3p8d_A 6 EFQINEQVLACWSDCRFYPAKVTAVNKD-GTYTVKFYD-G--VVQTVKHIHVKA 55 (67)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEECTT-SEEEEEETT-S--CEEEEEGGGEEE
T ss_pred ccccCCEEEEEcCCCCEeeEEEEEECCC-CeEEEEEeC-C--ceEEEeHHHccc
Confidence 6899999999877667789999999975 567766655 4 334456666655
No 323
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=20.28 E-value=1.3e+02 Score=21.41 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=26.5
Q ss_pred cCCCCeEEEe--cCCCCCCeEEEEEEeCC-CcE--EEEEEE
Q psy15224 449 YQLDELVRIK--DGPFTDFSGNIEEVNYE-KSR--VRVSVT 484 (502)
Q Consensus 449 ~~~G~~V~I~--~GPf~g~~g~v~~~~~~-~~r--v~v~v~ 484 (502)
++.|++|||. +--+-.-.|.|..+|.. +-+ +.|.++
T Consensus 1 i~RGskVrIlR~ESYWyn~vGtVasVD~s~gi~YPV~VRFd 41 (75)
T 1jb0_E 1 VQRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFD 41 (75)
T ss_dssp CCTTCEEEECCTTCTTBTCEEEEEEECCCTTCSCCEEEECS
T ss_pred CCCCCEEEEccccceeecCcceEEEEecCCCccccEEEEEe
Confidence 3579999998 55688889999999985 223 445444
No 324
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=20.24 E-value=2.9e+02 Score=25.73 Aligned_cols=42 Identities=7% Similarity=-0.013 Sum_probs=33.8
Q ss_pred CEEEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC
Q psy15224 9 DGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 50 (502)
Q Consensus 9 D~ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~ 50 (502)
+.+++|+-+..-....+++.+..+...|++..=+++|++.-.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 578888877655557778888999999999877779999864
No 325
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=20.22 E-value=70 Score=33.39 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=27.6
Q ss_pred CCEEEEEEECCCCCCcchHHHHHHHHH---hCCCeEEEEEEcCCCCCh
Q psy15224 8 MDGAILVCSAADGPMPQTREHILLARQ---VGVPYIVVFLNKADMVDD 52 (502)
Q Consensus 8 ~D~ailvVda~~g~~~qt~e~l~~~~~---~~i~~iiv~iNK~D~~~~ 52 (502)
..+++++++++.....+ +.+.+++. .|.+.++| +||+|+++.
T Consensus 185 ~~iil~vvt~~~d~a~~--~~l~la~~v~~~g~rtI~V-lTK~Dlv~~ 229 (608)
T 3szr_A 185 ETISLVVVPSNVDIATT--EALSMAQEVDPEGDRTIGI-LTKPDLVDK 229 (608)
T ss_dssp SCCEEEEEESSSCTTTC--HHHHHHHHHCSSCCSEEEE-EECGGGSSS
T ss_pred CCCceEEEeccchhccH--HHHHHHHHHhhcCCceEEE-ecchhhcCc
Confidence 35677888877655433 34445544 46676665 999999875
No 326
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=20.21 E-value=1.7e+02 Score=25.32 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=27.0
Q ss_pred EEEEEECCCCCCcchHHHHHHHHHhCCCeEEEEEEcCCCC
Q psy15224 11 AILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 50 (502)
Q Consensus 11 ailvVda~~g~~~qt~e~l~~~~~~~i~~iiv~iNK~D~~ 50 (502)
+++|+++..+-..++...+..++..+++.+=+++|+.|.-
T Consensus 141 vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 141 VILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 6777877544335556666667777888554559999864
Done!