RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15224
(502 letters)
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2
{Escherichia coli [TaxId: 562]}
Length = 92
Score = 132 bits (335), Expect = 2e-38
Identities = 74/92 (80%), Positives = 88/92 (95%)
Query: 117 AIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKL 176
AID FLLP+EDVFSISGRGTVVTGRVERGI++VGEE+EI+GIK+T K+TCTGVEMFRKL
Sbjct: 1 AIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKL 60
Query: 177 LDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 208
LD+G+AG+N+G+LLRG KRE++ERGQVLAKPG
Sbjct: 61 LDEGRAGENVGVLLRGIKREEIERGQVLAKPG 92
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2
{Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Length = 98
Score = 130 bits (329), Expect = 2e-37
Identities = 57/97 (58%), Positives = 75/97 (77%)
Query: 116 RAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRK 175
R ++ FLLPVE V+SI GRGTVVTG +ERGI++ G+E E +G ++T TG+EMF K
Sbjct: 2 RDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHK 61
Query: 176 LLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKP 212
LD+ +AGDN+G L+RG KRED+ RG V+AKPGSI+P
Sbjct: 62 SLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQP 98
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 133 bits (336), Expect = 3e-37
Identities = 68/114 (59%), Positives = 86/114 (75%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVE 60
MITG A +DG ILV +A DGPMPQTREH+LLARQ+GV ++VV++NKAD V D E++ELVE
Sbjct: 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVE 142
Query: 61 IEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 114
+EIRELL ++ + G + PII GSA ALE LG +S+ L A+DTYIP P
Sbjct: 143 LEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 132 bits (332), Expect = 2e-36
Identities = 82/121 (67%), Positives = 94/121 (77%), Gaps = 8/121 (6%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVE 60
MITGAAQMDGAILV SAADGPMPQTREHILLARQVGVPYIVVF+NK DMVDD ELL+LVE
Sbjct: 84 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVE 143
Query: 61 IEIRELLNKYEFPGNDIPIIKGSAKLALEGDTG--------PLGEQSILSLSKALDTYIP 112
+E+R+LLN+YEFPG+++P+I+GSA LALE I L A+D YIP
Sbjct: 144 MEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 203
Query: 113 T 113
T
Sbjct: 204 T 204
>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2
{Thermus thermophilus [TaxId: 274]}
Length = 100
Score = 122 bits (308), Expect = 2e-34
Identities = 67/100 (67%), Positives = 82/100 (82%), Gaps = 1/100 (1%)
Query: 114 PNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK-DTVKTTCTGVEM 172
P R +D FL+PVEDVF+I+GRGTV TGR+ERG V+VG+E+EI+G+ +T KT TGVEM
Sbjct: 1 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM 60
Query: 173 FRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKP 212
RK L +G AGDN+G+LLRG RE+VERGQVLAKPGSI P
Sbjct: 61 HRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITP 100
>d1nz8a_ d.58.42.1 (A:) N-utilization substance G protein NusG,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 119
Score = 112 bits (282), Expect = 2e-30
Identities = 42/115 (36%), Positives = 71/115 (61%), Gaps = 7/115 (6%)
Query: 328 KRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQ-KSVIKKRFF 386
WY +H+ G E+ + L +RI G+Q K ++L+PTEE+V++++ K V++K+ F
Sbjct: 2 IEWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLF 61
Query: 387 PGYVLIEMEMTD-----ESWHLVKNTKKVTGFIGGKSNRPTPISSKEIEEILKQI 436
PGY+ I+M++ D E+W +V+ T +TGF+G RP P+S E+ IL+
Sbjct: 62 PGYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAG-MRPVPLSPDEVRHILEVS 115
>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos
taurus), mitochondrial [TaxId: 9913]}
Length = 103
Score = 109 bits (274), Expect = 1e-29
Identities = 32/79 (40%), Positives = 52/79 (65%)
Query: 213 HKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITV 272
H+ ++Y L+K+EGGRH PF S++ P + T D+ I LP KE+ MPG+++ +T+
Sbjct: 1 HQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTL 60
Query: 273 RLINPIAMEEGLRFAIREG 291
L P+ +E+G RF +R+G
Sbjct: 61 ILRQPMILEKGQRFTLRDG 79
>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and
4 {Methanococcus maripaludis [TaxId: 39152]}
Length = 92
Score = 107 bits (269), Expect = 4e-29
Identities = 30/94 (31%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 116 RAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRK 175
R + F +P++ F I G GTVVTG + +GIV+VG+EL+++ I + T ++ F++
Sbjct: 1 RNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMS--TKVRSIQYFKE 58
Query: 176 LLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 209
+ + +AGD +G+ ++G + + RG +L +
Sbjct: 59 SVMEAKAGDRVGMAIQGVDAKQIYRGCILTSKDT 92
>d1m1ha2 d.58.42.1 (A:5-50,A:132-186) N-utilization substance G
protein NusG, N-terminal domain {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 105 bits (263), Expect = 4e-28
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 16/112 (14%)
Query: 327 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFF 386
+K+WY + G E + L++ + G++ ++VP + F
Sbjct: 6 EKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVP---------------ANKIF 50
Query: 387 PGYVLIEMEMTDESWHLVKNTKKVTGFIGGKSNRPTPISSKEIEEILKQIKK 438
PGY+LI+ M D+ ++ T V + +P P+ +E++ IL QIK+
Sbjct: 51 PGYILIKAHMNDKLLMAIEKTPHVFRPVMVG-GKPVPLKEEEVQNILNQIKR 101
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 94
Score = 103 bits (258), Expect = 2e-27
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 119 DGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLD 178
D LP++DV+ I G GTV GRVE G+++ G + T + VEM + L+
Sbjct: 1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKS--VEMHHEQLE 58
Query: 179 QGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKP 212
QG GDN+G ++ +++ RG V + P
Sbjct: 59 QGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPP 92
>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus
thermophilus [TaxId: 274]}
Length = 93
Score = 100 bits (250), Expect = 2e-26
Identities = 56/79 (70%), Positives = 62/79 (78%)
Query: 213 HKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITV 272
H F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG ++LP EMVMPGDNV TV
Sbjct: 1 HTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTV 60
Query: 273 RLINPIAMEEGLRFAIREG 291
LI P+A+EEGLRFAIREG
Sbjct: 61 ELIKPVALEEGLRFAIREG 79
>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 95
Score = 99.2 bits (247), Expect = 7e-26
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 118 IDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLL 177
+D +P++DV+SISG GTV GRVE G+++VG+++ + +E +
Sbjct: 2 VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFM--PAGKVGEVRSIETHHTKM 59
Query: 178 DQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 209
D+ + GDNIG +RG +++D++RG V+ P +
Sbjct: 60 DKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNN 91
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 101 bits (252), Expect = 5e-25
Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 23/138 (16%)
Query: 1 MITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMVD-D 52
MITG +Q D AIL+ + G QTREH LLA +GV ++V +NK D V D
Sbjct: 101 MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWD 160
Query: 53 EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLAL--------------EGDTGPLGEQ 98
E + + E + K + +P + S G
Sbjct: 161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVV 220
Query: 99 SILSLSKALDTYIPTPNR 116
+L +A+D I P+R
Sbjct: 221 KGKTLLEAIDA-IEQPSR 237
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
factor ERF2, post-G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 93.3 bits (232), Expect = 8e-24
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 115 NRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR 174
R ++ F++P+ + GT++ G++E G ++ + ++ I T++ T E
Sbjct: 3 ERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADE 60
Query: 175 KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 209
+ + GD + L +RG DV+ G VL +
Sbjct: 61 E-ISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN 93
>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 118
Score = 92.0 bits (228), Expect = 4e-23
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 21/118 (17%)
Query: 116 RAIDGAFLLPVEDVFSISG--------RGTVVTGRVERGIVRVGEELEIIGIKDTVK--- 164
R D + V F I+ +G V+ G + +G+ +VG+E+EI +
Sbjct: 1 RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNK 60
Query: 165 -------TTCTGVEMFRKLLDQGQAGDNIGLLLR---GTKREDVERGQVLAKPGSIKP 212
T + +L + G IG+ + D G V+ PG++ P
Sbjct: 61 TFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPP 118
>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 121
Score = 91.7 bits (227), Expect = 7e-23
Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 21/120 (17%)
Query: 114 PNRAIDGAFLLPVEDVFSISG--------RGTVVTGRVERGIVRVGEELEIIGIKDTV-- 163
P R + + V F ++ G V+ G + +G ++VG+E+EI
Sbjct: 1 PKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEH 60
Query: 164 --------KTTCTGVEMFRKLLDQGQAGDNIGLLLR---GTKREDVERGQVLAKPGSIKP 212
T ++ + +++ G +G+ + + D+ G V+ KPG + P
Sbjct: 61 GRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPP 120
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein
NusG, C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 58
Score = 85.4 bits (212), Expect = 2e-21
Identities = 29/57 (50%), Positives = 45/57 (78%)
Query: 446 KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 502
K+ ++ + VR+ +GPF +F+G +EEV+ EK ++ V ++IFGR TPVEL+F+QVEKI
Sbjct: 2 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVEKI 58
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 58
Score = 85.0 bits (211), Expect = 2e-21
Identities = 28/56 (50%), Positives = 42/56 (75%)
Query: 446 KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 501
++ ++ + VR+ GPF DF+G + E+N E+ +V+V VTIFGR TPVEL+F+QV K
Sbjct: 2 QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57
>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 91
Score = 78.7 bits (194), Expect = 1e-18
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 124 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAG 183
+ VE+V +I G V+ G VE G++ VG +++ + +E R+ ++ AG
Sbjct: 12 VVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKG----PSGIGGIVRIERNREKVEFAIAG 66
Query: 184 DNIGLLLRGTKREDVERGQVLAKPGS 209
D IG+ + G K V++G VL +
Sbjct: 67 DRIGISIEG-KIGKVKKGDVLEIYQT 91
>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 92
Score = 78.1 bits (192), Expect = 2e-18
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 122 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQ 181
PV+ V + G + GIV G+E+ ++ + + + F L+Q
Sbjct: 7 LRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKS--SRVKSIVTFEGELEQAG 64
Query: 182 AGDNIGLLLRGTKREDVERGQVLAKPGS 209
G + L + D+ RG +L +
Sbjct: 65 PGQAVTLTMED--EIDISRGDLLVHADN 90
>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit,
domain II {Sulfolobus solfataricus [TaxId: 2287]}
Length = 114
Score = 78.1 bits (192), Expect = 3e-18
Identities = 14/113 (12%), Positives = 40/113 (35%), Gaps = 21/113 (18%)
Query: 116 RAIDGAFLLPVEDVFSISG--------RGTVVTGRVERGIVRVGEELEIIGIKDTVK--- 164
R + ++ V F ++ +G V+ G + +G+ +V +E++++ K
Sbjct: 1 RDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGK 60
Query: 165 -------TTCTGVEMFRKLLDQGQAGDNIGLLLR---GTKREDVERGQVLAKP 207
T + + + + + G + + + D G ++
Sbjct: 61 VSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLA 113
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 79.9 bits (196), Expect = 1e-17
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 13/128 (10%)
Query: 1 MITGAAQMDGAILVCSAADGP-------MPQTREHILLARQVGVPYIVVFLNKADMVD-- 51
MITGA+Q D AILV SA G QTREHI+LA+ +G+ ++V +NK D+ +
Sbjct: 98 MITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 157
Query: 52 -DEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLA--LEGDTGPLGEQSILSLSKALD 108
DE+ + + ++ + + Y F N + + A + + + + +L + LD
Sbjct: 158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLD 217
Query: 109 TYIPTPNR 116
+ P +
Sbjct: 218 Q-LELPPK 224
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 65.0 bits (157), Expect = 1e-12
Identities = 41/115 (35%), Positives = 60/115 (52%), Gaps = 14/115 (12%)
Query: 1 MITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELV 59
M++GAA MDGAILV +A + P PQTREH + +GV +++ NK D+V EE L
Sbjct: 103 MLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQY 162
Query: 60 EIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 114
+I++ ++PII SA + D SL + ++ YI TP
Sbjct: 163 R-QIKQFTK--GTWAENVPIIPVSALHKINID----------SLIEGIEEYIKTP 204
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 61.4 bits (148), Expect = 2e-11
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELL-ELV 59
M TGA+ D AI++ A G QTR H +A +G+ +IVV +NK D+ +E + E +
Sbjct: 106 MATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESI 165
Query: 60 EIEIRELLNKYEFPGNDIPIIKGSAK 85
+ + + F + + SA
Sbjct: 166 KADYLKFAEGIAFKPTTMAFVPMSAL 191
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 61.3 bits (148), Expect = 4e-11
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVE 60
+ +DGAI+V ++ G PQ+ A + VP + F NK D + L +
Sbjct: 88 VERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIAFANKMDKTGADLWLVIRT 146
Query: 61 IEIR 64
++ R
Sbjct: 147 MQER 150
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 57.6 bits (138), Expect = 5e-10
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 1 MITGAAQMDGAILVCSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMVDDE 53
MI GA+Q D +LV SA G QTREH +LAR G+ ++VV +NK D +
Sbjct: 119 MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 178
Query: 54 ELLELVEIEIRELLNKY------EFPGNDIPIIKGSAK 85
E + E + L+ + D+ + SA
Sbjct: 179 WSEERYK-ECVDKLSMFLRRVAGYNSKTDVKYMPVSAY 215
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 47.7 bits (112), Expect = 6e-07
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 6 AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRE 65
+++ + P PQTREH++ + +G I++ NK ++VD E+ LE +I+E
Sbjct: 101 LMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYR-QIKE 159
Query: 66 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 113
+ + PII SA G +I L KA++ +IPT
Sbjct: 160 FIE--GTVAENAPIIPISAL---HGA-------NIDVLVKAIEDFIPT 195
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 46.7 bits (110), Expect = 4e-06
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVE 60
+ DGA++V +G QT + A + + V +NK D E ++ +
Sbjct: 113 VTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPV-VVINKVDRALLEL--QVSK 169
Query: 61 IEIRELLNKYEFPGNDI 77
++ + + N I
Sbjct: 170 EDLYQTFARTVESVNVI 186
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 128
Score = 43.6 bits (103), Expect = 5e-06
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 4/84 (4%)
Query: 122 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQ 181
L + VF S + V G++R G L + ++ + L
Sbjct: 7 IRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMNDDGETVGT--VESMQDKGENLKSAS 63
Query: 182 AGDNIGLLLRG-TKREDVERGQVL 204
G + + ++ + + G L
Sbjct: 64 RGQKVAMAIKDAVYGKTIHEGDTL 87
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 43.8 bits (102), Expect = 2e-05
Identities = 12/109 (11%), Positives = 28/109 (25%), Gaps = 26/109 (23%)
Query: 2 ITGAAQMDGAILVCSAADGPMPQTREHILLAR-----QVGVPYIVVFLNKADMVDDEELL 56
+ + + P + ++G I LNK D++ +EE
Sbjct: 118 LMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPA-LNKVDLLSEEEKE 176
Query: 57 ELVEI--------------------EIRELLNKYEFPGNDIPIIKGSAK 85
+ ++ + + ++ SAK
Sbjct: 177 RHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAK 225
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 38.9 bits (89), Expect = 7e-04
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 1 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVE 60
G A D AIL+ +G PQT+E + + R VV NK D + + E
Sbjct: 87 RKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT-PFVVAANKIDRIHGWRVHEGRP 145
Query: 61 IEIR 64
Sbjct: 146 FMET 149
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 37.0 bits (85), Expect = 0.003
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 10/173 (5%)
Query: 5 AAQMDGAILVCSAADGPMPQTR---EHILLARQVGVPYIVVFLNKADMVDDEELLELVEI 61
+D A+LV SA P T ++L + I+ K D+++D++ E
Sbjct: 8 ICNVDQAVLVFSAVQ-PSFSTALLDRFLVLVEANDIQPIICI-TKMDLIEDQDT----ED 61
Query: 62 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGA 121
I+ Y G D+ + + +L +++ + ++ + AI
Sbjct: 62 TIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQS-GVGKSSLLNAISPE 120
Query: 122 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR 174
L ++ GRG T VE G + G T E+
Sbjct: 121 LGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEEEELGY 173
>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus
norvegicus [TaxId: 10116]}
Length = 186
Score = 30.4 bits (68), Expect = 0.30
Identities = 9/63 (14%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 290 EGVQQFIQDNLLTKEIVNSNKINIDKGKEYIERSINNKKRWYVIHSYSGMEKNVQRKLIE 349
+ I+ E+ +++N+++ + +E +N W + + + R L++
Sbjct: 6 RTLADLIRI---LHELFAGDEVNVEEVQAVLEAYESNPAEWALYAKFD--QYRYTRNLVD 60
Query: 350 RIN 352
+ N
Sbjct: 61 QGN 63
>d1ro0a_ d.264.1.2 (A:) Bifunctional DNA primase/polymerase
N-terminal domain {Archaeon Sulfolobus islandicus
[TaxId: 43080]}
Length = 210
Score = 30.0 bits (67), Expect = 0.46
Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 6/74 (8%)
Query: 162 TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDV--ERGQVLAKPGSIKPHKHFTGE 219
T G+ ++ D N G D+ VL GS H H T +
Sbjct: 97 CTNTVHGGIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLG-LGSCVNHLHCTTD 155
Query: 220 IYALSKDEGGRHTP 233
+ +T
Sbjct: 156 KC---PWKEQNYTT 166
>g1mtp.1 e.1.1.1 (A:,B:) Thermopin {Thermobifida fusca [TaxId:
2021]}
Length = 355
Score = 30.2 bits (67), Expect = 0.61
Identities = 4/84 (4%), Positives = 17/84 (20%)
Query: 280 MEEGLRFAIREGVQQFIQDNLLTKEIVNSNKINIDKGKEYIERSINNKKRWYVIHSYSGM 339
+ L + + + ++ + + + +
Sbjct: 54 LTTLLGTDPAPLLAALDRAVTDSPDLASRTVLWVSADVPVRSSFRATMHDRPDSDVRTAD 113
Query: 340 EKNVQRKLIERINKLGMQKKFGRI 363
+ + +N G I
Sbjct: 114 FRTNPEGVRATVNADIADATRGMI 137
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Length = 139
Score = 28.3 bits (62), Expect = 1.3
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 401 WHLVKNTKKVTGFIGGKSNRPTPISSKEIEEILKQIKK 438
H++ K GF ++++ I I K
Sbjct: 99 MHIIPRYGKGDGFGAVWKTHADDYKPEDLQNISSSIAK 136
>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor
(Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId:
9606]}
Length = 249
Score = 28.0 bits (62), Expect = 2.4
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 294 QFIQDNLLTKEIVNSNKINIDKGKEYIERSINNKKRWYVIHSYSGMEKNVQRKLIERINK 353
+ + + T+ ++K + IE+ I + YV + ++ + +RI
Sbjct: 49 HNVAERMQTRG--KVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRA 106
Query: 354 L 354
L
Sbjct: 107 L 107
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e)
{Archaeon Thermococcus celer [TaxId: 2264]}
Length = 98
Score = 26.6 bits (59), Expect = 2.5
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 11 AILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM 49
A L+ A + + AR G+ ++
Sbjct: 32 AKLIIVARNARPDIKEDIEYYARLSGIAVYEFEGTSVEL 70
>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus
[TaxId: 10090]}
Length = 53
Score = 25.6 bits (56), Expect = 2.5
Identities = 3/30 (10%), Positives = 10/30 (33%)
Query: 385 FFPGYVLIEMEMTDESWHLVKNTKKVTGFI 414
++ ++ W V++ G+
Sbjct: 17 LRCDEEYYLLDSSEIHWWRVQDKNGHEGYA 46
>d1avgi_ b.60.1.3 (I:) Thrombin inhibitor {Triatomine bug (Triatoma
pallidipennis) [TaxId: 30077]}
Length = 142
Score = 27.0 bits (59), Expect = 3.2
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 10/86 (11%)
Query: 329 RWYVIHSYSGMEKNVQRKLIERINKLGM------QKKFGRILVPTEEIVDVKKNQKSVIK 382
WY+ H V +K +K KF + VD K ++ K
Sbjct: 24 TWYLAHGPGVTSPAVCQKFTTSGSKGFTQIVEIGYNKFESNVKFQCNQVDNKNGEQYSFK 83
Query: 383 KRFF----PGYVLIEMEMTDESWHLV 404
+ + ++ +++ LV
Sbjct: 84 CKSSDNTEFEADFTFISVSYDNFALV 109
>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 316
Score = 27.2 bits (59), Expect = 4.6
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 18/53 (33%)
Query: 422 TPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNY 474
T I+ E+ L Q Y + L K + +E N+
Sbjct: 1 TDITEDELRNFLTQ-------------YDVGSLTSYK-----GIAEGVENSNF 35
>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 101
Score = 25.1 bits (55), Expect = 7.9
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 134 GRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGD 184
G G + + GI+R + + ++ KD + T + R L + ++
Sbjct: 17 GLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRK 67
>d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC,
N-terminal domain {Neisseria meningitidis [TaxId: 487]}
Length = 280
Score = 26.5 bits (57), Expect = 8.0
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 313 IDKGKEYIERSI-NNKKRWYVIHSYSGMEKNVQRKLIERINK----LGMQKK 359
+ G +ER + R S M + ++L + + G +K
Sbjct: 225 VALGGSILERHFTDRMDRPGPDIVCS-MNPDTFKELKQGAHALKLARGGKKD 275
>d1nb9a_ b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 147
Score = 25.8 bits (56), Expect = 9.2
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 429 IEEILKQIKKGVEKPRPKILYQLDELVRIKDGPF 462
+E ++ I+ +E+ + K L +L E ++IK+ F
Sbjct: 111 LESLISAIQGDIEEAK-KRL-ELPEYLKIKEDNF 142
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.390
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,938,804
Number of extensions: 101031
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 61
Length of query: 502
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 413
Effective length of database: 1,185,626
Effective search space: 489663538
Effective search space used: 489663538
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.6 bits)